BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11433
(941 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|350400679|ref|XP_003485920.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like [Bombus impatiens]
Length = 777
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 283/418 (67%), Positives = 328/418 (78%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS+ER+GKIVDGRCHSLT+S VR+RH E+ P+C+FYE FD G+E + PG+YSI L
Sbjct: 139 VSREREGKIVDGRCHSLTASYVRERHNYDESTPICNFYEGFDMEGKEQFMPPGIYSIDDL 198
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GR+ CPYFLAR I+HA+IVVYSYHYLLDPKIA VSKEL++SSVVVFDEAHNID
Sbjct: 199 KEYGRDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAETVSKELSKSSVVVFDEAHNID 258
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INRRT+EK+ NIQ LE T+ EM+E D KL+EEY RLVEGL+DA ARE
Sbjct: 259 NVCIDSMSVKINRRTLEKSSANIQLLEKTVAEMREDDVNKLKEEYERLVEGLKDAHVARE 318
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD++LANPVLPDEILQEVVPGNIR AEHFVGFL+RF+EYLKTRLRVQ VVQESPA FL+D
Sbjct: 319 TDIILANPVLPDEILQEVVPGNIRNAEHFVGFLRRFVEYLKTRLRVQHVVQESPAAFLRD 378
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ +KV IERKPLRFCA
Sbjct: 379 --------------------------------------------VQTKVSIERKPLRFCA 394
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERLASLLRT+EIT+LTDFS ++++THLATLVS+YTKGF IIVEPF DK P V NP+L+F
Sbjct: 395 ERLASLLRTMEITDLTDFSPVILVTHLATLVSTYTKGFTIIVEPFDDKTPNVLNPILHFV 454
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+AIKP+FDRFQ+VVITSGTLSPLDMYPKILNF PVIM SF+MTLARPCLLPM+
Sbjct: 455 CLDSSIAIKPIFDRFQSVVITSGTLSPLDMYPKILNFHPVIMSSFTMTLARPCLLPMI 512
Score = 296 bits (758), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 138/196 (70%), Positives = 164/196 (83%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS+ER+GKIVDGRCHSLT+S VR+RH E+ P+C+FYE FD G+E + PG+YSI L
Sbjct: 139 VSREREGKIVDGRCHSLTASYVRERHNYDESTPICNFYEGFDMEGKEQFMPPGIYSIDDL 198
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE GR+ CPYFLAR I+HA+IVVYSYHYLLDPKIA VSKEL++SSVVVFDEAHNID
Sbjct: 199 KEYGRDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAETVSKELSKSSVVVFDEAHNID 258
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INRRT+EK+ NIQ LE T+ EM+E D KL+EEY RLVEGL+DA ARE
Sbjct: 259 NVCIDSMSVKINRRTLEKSSANIQLLEKTVAEMREDDVNKLKEEYERLVEGLKDAHVARE 318
Query: 836 TDVVLANPVLPDEILQ 851
TD++LANPVLPDEILQ
Sbjct: 319 TDIILANPVLPDEILQ 334
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 100/116 (86%), Gaps = 1/116 (0%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
+D L V+FPY+YIYPEQYAYM+ELK+ LDAKGHCLLEMPSGTGKT +LLSLIVAYM +P
Sbjct: 23 VDGLLVYFPYDYIYPEQYAYMLELKRGLDAKGHCLLEMPSGTGKTITLLSLIVAYMLENP 82
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNE-EINMTGLVLSSRKNLCIHSE 542
LDVTKL+YCSRTVPEIEKV+EEL +L DYY K E + + GLVLSSRKN+CIH E
Sbjct: 83 LDVTKLIYCSRTVPEIEKVIEELKKLMDYYEKETESKPKIVGLVLSSRKNMCIHPE 138
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/122 (59%), Positives = 94/122 (77%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYGIM+FADKRF+R DKRSKL
Sbjct: 653 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGIMVFADKRFSRMDKRSKL 711
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+LTD+L NLSTEEAVQ+SKRWLRQMAQPFTRE+ LG++LL+ +QL ++E+ + E
Sbjct: 712 PKWIQEHLTDSLCNLSTEEAVQISKRWLRQMAQPFTRENQLGLSLLTREQLEKEEYGKIE 771
Query: 936 EE 937
++
Sbjct: 772 QK 773
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 73/90 (81%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S +ETR+D++VIRNYGQLLV+ A VPDG+VCFFTSYLY+ES
Sbjct: 507 CLLP-MIVAKGNDQVAISSKYETREDVAVIRNYGQLLVEFAATVPDGLVCFFTSYLYMES 565
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
VVA+WYDQG++D LQ+ KLLFIETQD+ ++
Sbjct: 566 VVAAWYDQGVVDQLQRHKLLFIETQDSAET 595
>gi|340710930|ref|XP_003394036.1| PREDICTED: LOW QUALITY PROTEIN: TFIIH basal transcription factor
complex helicase XPD subunit-like [Bombus terrestris]
Length = 759
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 283/418 (67%), Positives = 327/418 (78%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS+ER+GKIVDGRCHSLT+S VR+RH E+ P+C+FYE FD G+E + PG+YSI L
Sbjct: 121 VSREREGKIVDGRCHSLTASYVRERHNYDESTPICNFYEGFDMEGKEQFMPPGIYSIDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GR+ CPYFLAR I+HA+IVVYSYHYLLDPKIA VSKEL++SSVVVFDEAHNID
Sbjct: 181 KEYGRDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAETVSKELSKSSVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INRRT+EK+ NIQ LE T+ EM+E D KL+EEY RLVEGL+DA ARE
Sbjct: 241 NVCIDSMSVKINRRTLEKSSANIQLLEKTVAEMREDDVNKLKEEYERLVEGLKDAHVARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD++LANPVLPDEILQEVVPGNIR AEHFVGFL+RF+EYLKTRLRVQ VVQESPA FL+D
Sbjct: 301 TDIILANPVLPDEILQEVVPGNIRNAEHFVGFLRRFVEYLKTRLRVQHVVQESPAAFLRD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ +KV IERKPLRFCA
Sbjct: 361 --------------------------------------------VQTKVSIERKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERLASLLRT+EIT+LTDFS +++THLATLVS+YTKGF IIVEPF DK P V NP+L+F
Sbjct: 377 ERLASLLRTMEITDLTDFSPAILVTHLATLVSTYTKGFTIIVEPFDDKTPNVLNPILHFV 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+AIKP+FDRFQ+VVITSGTLSPLDMYPKILNF PVIM SF+MTLARPCLLPM+
Sbjct: 437 CLDSSIAIKPIFDRFQSVVITSGTLSPLDMYPKILNFHPVIMSSFTMTLARPCLLPMI 494
Score = 296 bits (759), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 138/196 (70%), Positives = 164/196 (83%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS+ER+GKIVDGRCHSLT+S VR+RH E+ P+C+FYE FD G+E + PG+YSI L
Sbjct: 121 VSREREGKIVDGRCHSLTASYVRERHNYDESTPICNFYEGFDMEGKEQFMPPGIYSIDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE GR+ CPYFLAR I+HA+IVVYSYHYLLDPKIA VSKEL++SSVVVFDEAHNID
Sbjct: 181 KEYGRDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAETVSKELSKSSVVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INRRT+EK+ NIQ LE T+ EM+E D KL+EEY RLVEGL+DA ARE
Sbjct: 241 NVCIDSMSVKINRRTLEKSSANIQLLEKTVAEMREDDVNKLKEEYERLVEGLKDAHVARE 300
Query: 836 TDVVLANPVLPDEILQ 851
TD++LANPVLPDEILQ
Sbjct: 301 TDIILANPVLPDEILQ 316
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 87/120 (72%), Positives = 101/120 (84%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + +D L V+FPY+YIYPEQYAYM+ELK+ LDAKGHCLLEMPSGTGKT +LLSLIVAYM
Sbjct: 1 MKISVDGLLVYFPYDYIYPEQYAYMLELKRGLDAKGHCLLEMPSGTGKTITLLSLIVAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+PLDVTKL+YCSRTVPEIEKV+EEL +L DYY K + + GLVLSSRKN+CIH E
Sbjct: 61 LENPLDVTKLIYCSRTVPEIEKVIEELKKLMDYYEKETGSKPKIVGLVLSSRKNMCIHPE 120
Score = 145 bits (366), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 73/122 (59%), Positives = 94/122 (77%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYGIM+FADKRF+R DKRSKL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGIMVFADKRFSRMDKRSKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+LTD+L NLSTEEAVQ+SKRWLRQMAQPFTRE+ LG++LL+ +QL ++E+ + E
Sbjct: 694 PKWIQEHLTDSLCNLSTEEAVQISKRWLRQMAQPFTRENQLGLSLLTREQLEKEEYGKIE 753
Query: 936 EE 937
++
Sbjct: 754 QK 755
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 73/90 (81%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S +ETR+D++VIRNYGQLLV+ A VPDG+VCFFTSYLY+ES
Sbjct: 489 CLLP-MIVAKGNDQVAISSKYETREDVAVIRNYGQLLVEFAATVPDGLVCFFTSYLYMES 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
VVA+WYDQG++D LQ+ KLLFIETQD+ ++
Sbjct: 548 VVAAWYDQGVVDQLQRHKLLFIETQDSAET 577
>gi|332026203|gb|EGI66345.1| TFIIH basal transcription factor complex helicase subunit
[Acromyrmex echinatior]
Length = 774
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 279/418 (66%), Positives = 327/418 (78%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS+ER+GKIVDGRCHSLT+S VR+RH E+ P+C+FYE FD GRE + PG+YSI L
Sbjct: 136 VSREREGKIVDGRCHSLTASYVRERHNYDESTPICNFYEGFDMEGREQIMPPGIYSIDDL 195
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE G++ CPYFLAR I+HA+IVVYSYHYLLDPKIA VSKEL+RSSVV+FDEAHNID
Sbjct: 196 KEYGKDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAETVSKELSRSSVVIFDEAHNID 255
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INR+T+EK+ NIQ LE T+ EM++ D KL+EEY RLVEGLRDAQ RE
Sbjct: 256 NVCIDSMSVKINRKTMEKSTANIQLLEKTVAEMRQEDVNKLKEEYERLVEGLRDAQFQRE 315
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TDV+LANP+LP+EIL+EV+PGNIR AEHFV FLKRF+EYLKTRLRVQ VVQESPA FLKD
Sbjct: 316 TDVILANPILPNEILEEVIPGNIRNAEHFVSFLKRFVEYLKTRLRVQHVVQESPAAFLKD 375
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
I +KV IERKPLRFCA
Sbjct: 376 I--------------------------------------------QAKVAIERKPLRFCA 391
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
+RLASLLRT+EIT+LTDFS ++++THLATLVS+YT GF IIVEPF DK PTV NP+L+F
Sbjct: 392 QRLASLLRTMEITDLTDFSPIILVTHLATLVSTYTHGFTIIVEPFDDKTPTVLNPILHFS 451
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+AIKP+FDRFQ+VVITSGTLSPLDMYPK+LNF PVIM SF+MTLARPCLLPM+
Sbjct: 452 CLDSSIAIKPIFDRFQSVVITSGTLSPLDMYPKVLNFHPVIMSSFTMTLARPCLLPMI 509
Score = 295 bits (754), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 135/196 (68%), Positives = 164/196 (83%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS+ER+GKIVDGRCHSLT+S VR+RH E+ P+C+FYE FD GRE + PG+YSI L
Sbjct: 136 VSREREGKIVDGRCHSLTASYVRERHNYDESTPICNFYEGFDMEGREQIMPPGIYSIDDL 195
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE G++ CPYFLAR I+HA+IVVYSYHYLLDPKIA VSKEL+RSSVV+FDEAHNID
Sbjct: 196 KEYGKDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAETVSKELSRSSVVIFDEAHNID 255
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INR+T+EK+ NIQ LE T+ EM++ D KL+EEY RLVEGLRDAQ RE
Sbjct: 256 NVCIDSMSVKINRKTMEKSTANIQLLEKTVAEMRQEDVNKLKEEYERLVEGLRDAQFQRE 315
Query: 836 TDVVLANPVLPDEILQ 851
TDV+LANP+LP+EIL+
Sbjct: 316 TDVILANPILPNEILE 331
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/123 (70%), Positives = 103/123 (83%), Gaps = 1/123 (0%)
Query: 421 NYAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIV 480
++ + +D L V+FPY+YIYPEQYAYM+ELK+ LDAKGHCLLEMPSGTGKT +LLSLIV
Sbjct: 13 HFCYRISVDGLIVYFPYDYIYPEQYAYMLELKRGLDAKGHCLLEMPSGTGKTITLLSLIV 72
Query: 481 AYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNE-EINMTGLVLSSRKNLCI 539
AYM HPLDVTKL+YCSRTVPEIEKV+EEL +L DYY K + + + GLVLSSRKN+CI
Sbjct: 73 AYMLEHPLDVTKLIYCSRTVPEIEKVIEELKKLIDYYEKETKSKPKIVGLVLSSRKNMCI 132
Query: 540 HSE 542
H E
Sbjct: 133 HPE 135
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/122 (59%), Positives = 93/122 (76%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYGIM+FADKRF+R DKRSKL
Sbjct: 650 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGIMVFADKRFSRIDKRSKL 708
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+L D+L NLSTEEA+Q+SKRWLRQMAQPFTRE+ LG++LL+ +QL ++E A+ E
Sbjct: 709 PKWIQEHLNDSLCNLSTEEAIQISKRWLRQMAQPFTRENQLGLSLLTREQLEKEEAAKIE 768
Query: 936 EE 937
++
Sbjct: 769 QK 770
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 73/90 (81%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S +ETR+D++VIRNYGQLLV+ A VPDG+VCFFTSYLY+ES
Sbjct: 504 CLLP-MIVAKGNDQVAISSKYETREDVAVIRNYGQLLVEFAATVPDGLVCFFTSYLYMES 562
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
VVA+WYDQG++D LQ+ KLLFIETQD+ ++
Sbjct: 563 VVAAWYDQGVVDQLQRHKLLFIETQDSAET 592
>gi|345480734|ref|XP_001605333.2| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like [Nasonia vitripennis]
Length = 759
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 275/418 (65%), Positives = 329/418 (78%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER+GKIVD +CH+LT+S VR+RH E+ PVC FYE FD GRE + PG+YSI +
Sbjct: 121 VSKEREGKIVDSQCHALTASYVRERHNYDESTPVCGFYETFDIEGREMMMPPGIYSIDDM 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE G++ CPYFLAR I+HA+I+VYSYHYLLDPKIA VSKELA+SSVVVFDEAHNID
Sbjct: 181 KEYGKDRNWCPYFLARYTIMHAQIIVYSYHYLLDPKIAEAVSKELAKSSVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV++NRRT+EK+ N+ LE T+ EMKE D+ KL++EY +LVEGL+DAQ ARE
Sbjct: 241 NVCIDSMSVKLNRRTMEKSCANLSLLEKTVAEMKEDDANKLKDEYNKLVEGLKDAQVARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TDVVLANPVLP+E+L++VVPGNIR AEHFVGFLKRF+EYLK RLR+Q VVQE+P TFL+D
Sbjct: 301 TDVVLANPVLPNEVLEDVVPGNIRKAEHFVGFLKRFVEYLKMRLRIQHVVQETPVTFLRD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ +K+CIERKPLRFCA
Sbjct: 361 --------------------------------------------VQAKICIERKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERLASLLRT+EIT+LTDFS L+++THLATLV++YTKGF II+EPF DKAPTV NP+LYF
Sbjct: 377 ERLASLLRTMEITDLTDFSPLILVTHLATLVATYTKGFTIIIEPFDDKAPTVHNPILYFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+KP+FDRFQ+VVITSGTLSPLDMYPKILNF PVIM SF+MTLARPCLLPM+
Sbjct: 437 CLDSSIAMKPIFDRFQSVVITSGTLSPLDMYPKILNFHPVIMSSFTMTLARPCLLPMI 494
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 132/196 (67%), Positives = 163/196 (83%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKER+GKIVD +CH+LT+S VR+RH E+ PVC FYE FD GRE + PG+YSI +
Sbjct: 121 VSKEREGKIVDSQCHALTASYVRERHNYDESTPVCGFYETFDIEGREMMMPPGIYSIDDM 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE G++ CPYFLAR I+HA+I+VYSYHYLLDPKIA VSKELA+SSVVVFDEAHNID
Sbjct: 181 KEYGKDRNWCPYFLARYTIMHAQIIVYSYHYLLDPKIAEAVSKELAKSSVVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV++NRRT+EK+ N+ LE T+ EMKE D+ KL++EY +LVEGL+DAQ ARE
Sbjct: 241 NVCIDSMSVKLNRRTMEKSCANLSLLEKTVAEMKEDDANKLKDEYNKLVEGLKDAQVARE 300
Query: 836 TDVVLANPVLPDEILQ 851
TDVVLANPVLP+E+L+
Sbjct: 301 TDVVLANPVLPNEVLE 316
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 85/120 (70%), Positives = 100/120 (83%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + +D L V+FPY+YIYPEQYAYM++LK+ LDAKGHCLLEMPSGTGKT +LLSLIVAYM
Sbjct: 1 MKISVDGLLVYFPYDYIYPEQYAYMLDLKRGLDAKGHCLLEMPSGTGKTITLLSLIVAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSE 542
HP VTKL+YCSRTVPEIEKV+EEL +L DYY K + + + GLVLSSRKN+CIH E
Sbjct: 61 LEHPHQVTKLIYCSRTVPEIEKVIEELKKLIDYYEKETKVLPKIIGLVLSSRKNMCIHPE 120
Score = 150 bits (380), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/122 (60%), Positives = 93/122 (76%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD +E D + + + ++GKTDYGIM+FADKRF+R DK+SKL
Sbjct: 635 ARL-EYLRDQFQIKENDFLTFDAMRHAAQCVGRAIRGKTDYGIMVFADKRFSRIDKKSKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQEYLTDNL NLSTEEA+Q+ KRWLRQMAQPF+RED LG++LL+L+QL +E A+ E
Sbjct: 694 PKWIQEYLTDNLCNLSTEEAIQICKRWLRQMAQPFSREDQLGLSLLTLEQLQNREQAKIE 753
Query: 936 EE 937
E+
Sbjct: 754 EQ 755
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 73/90 (81%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S +ETR+D++VIRNYGQLLV+ A VPDG+VCFFTSYLY+ES
Sbjct: 489 CLLP-MIVSKGNDQVAISSKYETREDVAVIRNYGQLLVEFAANVPDGIVCFFTSYLYMES 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
VVA+WYDQGI+D +Q+ KL+FIETQDA ++
Sbjct: 548 VVAAWYDQGILDQIQRYKLIFIETQDAAET 577
>gi|328786210|ref|XP_396155.4| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit [Apis mellifera]
Length = 759
Score = 577 bits (1487), Expect = e-161, Method: Compositional matrix adjust.
Identities = 275/418 (65%), Positives = 326/418 (77%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS+ER+GKIVDGRCHSLT+S VR+RH ++ P+C+FYE FD G+E + G+YSI L
Sbjct: 121 VSREREGKIVDGRCHSLTASYVRERHNYDDSTPICNFYEGFDMEGKEQIMPSGIYSIDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE G++ CPYFLAR I+HA+IVVYSYHYLLDPKIA VS+EL++SSVV+FDEAHNID
Sbjct: 181 KEYGKDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAETVSRELSKSSVVIFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INRRT+EK+ NIQ LE T+ EM+E D KL+EEY RLVEGL+DA ARE
Sbjct: 241 NVCIDSMSVKINRRTLEKSSANIQLLEKTVAEMREDDVNKLKEEYERLVEGLKDAHVARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD++LANPVLP+E+LQEVVPGNIR AEHFV FLKRF+EYLKTRLRVQ VVQESPA FL+D
Sbjct: 301 TDIILANPVLPNEVLQEVVPGNIRNAEHFVSFLKRFVEYLKTRLRVQHVVQESPAAFLRD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ +KV IERKPLRFCA
Sbjct: 361 --------------------------------------------VQTKVSIERKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERLASLLRT+EIT+LTDFS ++++THLATLVS+YTKGF IIVEPF DK P V NP+L+F
Sbjct: 377 ERLASLLRTMEITDLTDFSPIILVTHLATLVSTYTKGFTIIVEPFDDKTPNVLNPILHFV 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+KP+FDRFQ+VVITSGTLSPLDMYPKILNF PVIM SF+MTLARPCLLPM+
Sbjct: 437 CLDSSIAMKPIFDRFQSVVITSGTLSPLDMYPKILNFHPVIMSSFTMTLARPCLLPMI 494
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 131/196 (66%), Positives = 163/196 (83%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS+ER+GKIVDGRCHSLT+S VR+RH ++ P+C+FYE FD G+E + G+YSI L
Sbjct: 121 VSREREGKIVDGRCHSLTASYVRERHNYDDSTPICNFYEGFDMEGKEQIMPSGIYSIDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE G++ CPYFLAR I+HA+IVVYSYHYLLDPKIA VS+EL++SSVV+FDEAHNID
Sbjct: 181 KEYGKDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAETVSRELSKSSVVIFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INRRT+EK+ NIQ LE T+ EM+E D KL+EEY RLVEGL+DA ARE
Sbjct: 241 NVCIDSMSVKINRRTLEKSSANIQLLEKTVAEMREDDVNKLKEEYERLVEGLKDAHVARE 300
Query: 836 TDVVLANPVLPDEILQ 851
TD++LANPVLP+E+LQ
Sbjct: 301 TDIILANPVLPNEVLQ 316
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/120 (72%), Positives = 102/120 (85%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + +D L V+FPY+YIYPEQYAYM+ELK+ LDAKGHCLLEMPSGTGKT +LLSLIVAYM
Sbjct: 1 MKISVDGLLVYFPYDYIYPEQYAYMLELKRGLDAKGHCLLEMPSGTGKTITLLSLIVAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNE-EINMTGLVLSSRKNLCIHSE 542
+PLDVTKL+YCSRTVPEIEKV+EEL +L DYY K + + + GLVLSSRKN+CIH E
Sbjct: 61 LENPLDVTKLIYCSRTVPEIEKVIEELKKLMDYYEKETDNKPKIVGLVLSSRKNMCIHPE 120
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/122 (59%), Positives = 94/122 (77%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYGIMIFADKRF+R DKRSKL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGIMIFADKRFSRIDKRSKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+LTD+L NLSTEEAVQ+SKRWLRQMAQPFTRE+ LG++LL+ +QL ++E+ + +
Sbjct: 694 PKWIQEHLTDSLCNLSTEEAVQISKRWLRQMAQPFTRENQLGLSLLTREQLEKEEYGKIK 753
Query: 936 EE 937
++
Sbjct: 754 QK 755
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 73/90 (81%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S +ETR+D++VIRNYGQLLV+ A VPDG+VCFFTSYLY+ES
Sbjct: 489 CLLP-MIVAKGNDQVAISSKYETREDVAVIRNYGQLLVEFAATVPDGLVCFFTSYLYMES 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
VVA+WYDQG++D LQ+ KLLFIETQD+ ++
Sbjct: 548 VVAAWYDQGVVDQLQRHKLLFIETQDSAET 577
>gi|307210249|gb|EFN86899.1| TFIIH basal transcription factor complex helicase subunit
[Harpegnathos saltator]
Length = 735
Score = 577 bits (1486), Expect = e-161, Method: Compositional matrix adjust.
Identities = 274/418 (65%), Positives = 327/418 (78%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS+ER+GKIVDGRCHSLT+S VR+RH E+ P+C+FYE FD GRE + PG+YS+ L
Sbjct: 97 VSREREGKIVDGRCHSLTASYVRERHNHDESTPICNFYEGFDMEGREQIVPPGIYSLDDL 156
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K+ G++ G CPYFLAR I+HA+IVVYSYHYLLDPKIA VSKEL++SSVVVFDEAHNID
Sbjct: 157 KDYGKDRGWCPYFLARFTILHAQIVVYSYHYLLDPKIAETVSKELSKSSVVVFDEAHNID 216
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+IN++ +E++ NIQ LE T+ EM++ D KL+EEY RLV GLRDAQ ARE
Sbjct: 217 NVCIDSMSVKINKKLMERSTNNIQLLEKTVAEMRDCDVNKLKEEYDRLVAGLRDAQLARE 276
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TDV+LANPVLPDEIL+E+VPGNIR AEHFV FLKRF+EYLKTRLRVQ V+QESPA FL+D
Sbjct: 277 TDVILANPVLPDEILEEIVPGNIRNAEHFVSFLKRFVEYLKTRLRVQHVMQESPAAFLRD 336
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
I +KV IERKPLRFCA
Sbjct: 337 I--------------------------------------------QAKVSIERKPLRFCA 352
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
+RLASLLRT+EIT++TDFS ++++THLATLVS+YT GF IIVEPF DK PTV NP+L+F
Sbjct: 353 QRLASLLRTMEITDMTDFSPIILVTHLATLVSTYTHGFTIIVEPFDDKTPTVLNPILHFS 412
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+AIKP+FDRFQ+V+ITSGTLSPLDMYPKILNF PVIM SF+MTLARPCLLPM+
Sbjct: 413 CLDSSIAIKPIFDRFQSVIITSGTLSPLDMYPKILNFHPVIMSSFTMTLARPCLLPMI 470
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 133/196 (67%), Positives = 164/196 (83%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS+ER+GKIVDGRCHSLT+S VR+RH E+ P+C+FYE FD GRE + PG+YS+ L
Sbjct: 97 VSREREGKIVDGRCHSLTASYVRERHNHDESTPICNFYEGFDMEGREQIVPPGIYSLDDL 156
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K+ G++ G CPYFLAR I+HA+IVVYSYHYLLDPKIA VSKEL++SSVVVFDEAHNID
Sbjct: 157 KDYGKDRGWCPYFLARFTILHAQIVVYSYHYLLDPKIAETVSKELSKSSVVVFDEAHNID 216
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+IN++ +E++ NIQ LE T+ EM++ D KL+EEY RLV GLRDAQ ARE
Sbjct: 217 NVCIDSMSVKINKKLMERSTNNIQLLEKTVAEMRDCDVNKLKEEYDRLVAGLRDAQLARE 276
Query: 836 TDVVLANPVLPDEILQ 851
TDV+LANPVLPDEIL+
Sbjct: 277 TDVILANPVLPDEILE 292
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/122 (61%), Positives = 93/122 (76%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYGIM+FADKRF+R DKRSKL
Sbjct: 611 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGIMVFADKRFSRVDKRSKL 669
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+LTDN NLSTEEA+Q+SKRWLRQMAQPFTRE+ LG++LL+ +QL ++E AR E
Sbjct: 670 PKWIQEHLTDNFCNLSTEEAIQISKRWLRQMAQPFTRENQLGLSLLTREQLEKEETARIE 729
Query: 936 EE 937
E+
Sbjct: 730 EK 731
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/96 (71%), Positives = 81/96 (84%), Gaps = 1/96 (1%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M+ELK+ LDAKGHCLLEMPSGTGKT +LLSLIVAYM +PL+VTKL+YCSRTVPEIEKV+
Sbjct: 1 MLELKRGLDAKGHCLLEMPSGTGKTITLLSLIVAYMLEYPLNVTKLIYCSRTVPEIEKVI 60
Query: 508 EELARLFDYY-IKHNEEINMTGLVLSSRKNLCIHSE 542
EEL +L DYY + + + GLVLSSRKN+CIH E
Sbjct: 61 EELKKLIDYYETETKSKPKIVGLVLSSRKNMCIHPE 96
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 73/90 (81%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S +ETR+D++VIRNYGQLLV+ A VPDG+VCFFTSYLY+ES
Sbjct: 465 CLLP-MIVAKGNDQVAISSKYETREDVAVIRNYGQLLVEFAATVPDGLVCFFTSYLYMES 523
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
VVA+WYDQG++D LQ+ KLLFIETQD+ ++
Sbjct: 524 VVAAWYDQGVVDQLQRHKLLFIETQDSAET 553
>gi|380014617|ref|XP_003691322.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like [Apis florea]
Length = 759
Score = 576 bits (1484), Expect = e-161, Method: Compositional matrix adjust.
Identities = 274/418 (65%), Positives = 326/418 (77%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS+ER+GKIVDGRCHSLT+S VR+RH ++ P+C+FYE FD G+E + G+YSI L
Sbjct: 121 VSREREGKIVDGRCHSLTASYVRERHNYDDSTPICNFYEGFDMEGKEQIMPSGIYSIDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE G++ CPYFLAR I+HA+IVVYSYHYLLDPKIA VS+EL+++SVV+FDEAHNID
Sbjct: 181 KEYGKDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAETVSRELSKNSVVIFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INRRT+EK+ NIQ LE T+ EM+E D KL+EEY RLVEGL+DA ARE
Sbjct: 241 NVCIDSMSVKINRRTLEKSSANIQLLEKTVAEMREDDVNKLKEEYERLVEGLKDAHVARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD++LANPVLP+E+LQEVVPGNIR AEHFV FLKRF+EYLKTRLRVQ VVQESPA FL+D
Sbjct: 301 TDIILANPVLPNEVLQEVVPGNIRNAEHFVSFLKRFVEYLKTRLRVQHVVQESPAAFLRD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ +KV IERKPLRFCA
Sbjct: 361 --------------------------------------------VQTKVSIERKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERLASLLRT+EIT+LTDFS ++++THLATLVS+YTKGF IIVEPF DK P V NP+L+F
Sbjct: 377 ERLASLLRTMEITDLTDFSPIILVTHLATLVSTYTKGFTIIVEPFDDKTPNVLNPILHFV 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+KP+FDRFQ+VVITSGTLSPLDMYPKILNF PVIM SF+MTLARPCLLPM+
Sbjct: 437 CLDSSIAMKPIFDRFQSVVITSGTLSPLDMYPKILNFHPVIMSSFTMTLARPCLLPMI 494
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 130/196 (66%), Positives = 163/196 (83%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS+ER+GKIVDGRCHSLT+S VR+RH ++ P+C+FYE FD G+E + G+YSI L
Sbjct: 121 VSREREGKIVDGRCHSLTASYVRERHNYDDSTPICNFYEGFDMEGKEQIMPSGIYSIDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE G++ CPYFLAR I+HA+IVVYSYHYLLDPKIA VS+EL+++SVV+FDEAHNID
Sbjct: 181 KEYGKDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAETVSRELSKNSVVIFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INRRT+EK+ NIQ LE T+ EM+E D KL+EEY RLVEGL+DA ARE
Sbjct: 241 NVCIDSMSVKINRRTLEKSSANIQLLEKTVAEMREDDVNKLKEEYERLVEGLKDAHVARE 300
Query: 836 TDVVLANPVLPDEILQ 851
TD++LANPVLP+E+LQ
Sbjct: 301 TDIILANPVLPNEVLQ 316
Score = 185 bits (470), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 88/120 (73%), Positives = 102/120 (85%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + +D L V+FPY+YIYPEQYAYM+ELK+ LDAKGHCLLEMPSGTGKT +LLSLIVAYM
Sbjct: 1 MKISVDGLLVYFPYDYIYPEQYAYMLELKRGLDAKGHCLLEMPSGTGKTITLLSLIVAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNE-EINMTGLVLSSRKNLCIHSE 542
+PLDVTKL+YCSRTVPEIEKV+EEL +L DYY K E + + GLVLSSRKN+CIH E
Sbjct: 61 LENPLDVTKLIYCSRTVPEIEKVIEELKKLMDYYEKETENKPKIVGLVLSSRKNMCIHPE 120
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/122 (59%), Positives = 94/122 (77%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYGIMIFADKRF+R DKRSKL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGIMIFADKRFSRVDKRSKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+LTD+L NLSTEEAVQ+SKRWLRQMAQPFTRE+ LG++LL+ +QL ++E+ + +
Sbjct: 694 PKWIQEHLTDSLCNLSTEEAVQISKRWLRQMAQPFTRENQLGLSLLTREQLEKEEYGKIK 753
Query: 936 EE 937
++
Sbjct: 754 QK 755
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 73/90 (81%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S +ETR+D++VIRNYGQLLV+ A VPDG+VCFFTSYLY+ES
Sbjct: 489 CLLP-MIVAKGNDQVAISSKYETREDVAVIRNYGQLLVEFAATVPDGLVCFFTSYLYMES 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
VVA+WYDQG++D LQ+ KLLFIETQD+ ++
Sbjct: 548 VVAAWYDQGVVDQLQRHKLLFIETQDSAET 577
>gi|307182232|gb|EFN69563.1| TFIIH basal transcription factor complex helicase subunit
[Camponotus floridanus]
Length = 759
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 274/418 (65%), Positives = 325/418 (77%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS+ER+GKIVDGRCHSLT+S VR+RH E+ P+C FYE FD GRE + PG+YSI L
Sbjct: 121 VSREREGKIVDGRCHSLTASYVRERHNYDESTPICSFYEGFDMEGREQIIPPGIYSIDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K+ G++ CPYFLAR I+HA+IVVYSYHYLLDPKIA VSKEL+++SVVVFDEAHNID
Sbjct: 181 KDYGKDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAETVSKELSKNSVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INR+ +EK+ NIQ LE T+ EM+E D KL+EEY RLVEGL+DAQ RE
Sbjct: 241 NVCIDSMSVKINRKLMEKSSTNIQLLEKTVAEMREVDVNKLKEEYNRLVEGLKDAQLQRE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TDV+LANP+LP+E+L+EVVPGNIR AEHFV FLKRF+EYLKTRLRVQ VVQESPA FL+D
Sbjct: 301 TDVILANPILPNEVLEEVVPGNIRNAEHFVSFLKRFVEYLKTRLRVQHVVQESPAAFLRD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
I +KV IERKPLRFCA
Sbjct: 361 I--------------------------------------------QAKVAIERKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
+RLASLLRT+EIT+LTDFS ++++THLATLVS+YT GF IIVEPF DK PTV NP+L+F
Sbjct: 377 QRLASLLRTMEITDLTDFSPIILVTHLATLVSTYTHGFTIIVEPFDDKTPTVLNPILHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+KP+FDRFQ+V+ITSGTLSPLDMYPKILNF PVIM SF+MTLARPCLLPM+
Sbjct: 437 CLDSSIAVKPIFDRFQSVIITSGTLSPLDMYPKILNFHPVIMSSFTMTLARPCLLPMI 494
Score = 285 bits (730), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 131/196 (66%), Positives = 162/196 (82%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS+ER+GKIVDGRCHSLT+S VR+RH E+ P+C FYE FD GRE + PG+YSI L
Sbjct: 121 VSREREGKIVDGRCHSLTASYVRERHNYDESTPICSFYEGFDMEGREQIIPPGIYSIDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K+ G++ CPYFLAR I+HA+IVVYSYHYLLDPKIA VSKEL+++SVVVFDEAHNID
Sbjct: 181 KDYGKDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAETVSKELSKNSVVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INR+ +EK+ NIQ LE T+ EM+E D KL+EEY RLVEGL+DAQ RE
Sbjct: 241 NVCIDSMSVKINRKLMEKSSTNIQLLEKTVAEMREVDVNKLKEEYNRLVEGLKDAQLQRE 300
Query: 836 TDVVLANPVLPDEILQ 851
TDV+LANP+LP+E+L+
Sbjct: 301 TDVILANPILPNEVLE 316
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/120 (73%), Positives = 102/120 (85%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + +D L V+FPY+YIYPEQYAYM+ELK+ LDAKGHCLLEMPSGTGKT +LLSLIVAYM
Sbjct: 1 MKISVDGLIVYFPYDYIYPEQYAYMLELKRGLDAKGHCLLEMPSGTGKTITLLSLIVAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNE-EINMTGLVLSSRKNLCIHSE 542
HPLDVTKL+YCSRTVPEIEKV+EEL +L DYY K + + + GLVLSSRKN+CIH E
Sbjct: 61 LEHPLDVTKLIYCSRTVPEIEKVIEELKKLIDYYEKETKSKPKIVGLVLSSRKNMCIHPE 120
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/122 (59%), Positives = 93/122 (76%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYGIM+FADKRF+R DKRSKL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGIMVFADKRFSRIDKRSKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+L DNL NLSTEEA+Q+SKRWLRQMAQPFTRE+ LG++LL+ +QL ++E A+ E
Sbjct: 694 PKWIQEHLNDNLCNLSTEEAIQISKRWLRQMAQPFTRENQLGLSLLTREQLEKEEAAKIE 753
Query: 936 EE 937
++
Sbjct: 754 QK 755
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 73/90 (81%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S +ETR+D++VIRNYGQLLV+ A VPDG+VCFFTSYLY+ES
Sbjct: 489 CLLP-MIVGKGNDQVTISSKYETREDVAVIRNYGQLLVEFAATVPDGLVCFFTSYLYMES 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
VVA+WYDQG++D LQ+ KLLFIETQD+ ++
Sbjct: 548 VVAAWYDQGVVDQLQRHKLLFIETQDSAET 577
>gi|383850774|ref|XP_003700951.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like [Megachile rotundata]
Length = 759
Score = 573 bits (1478), Expect = e-160, Method: Compositional matrix adjust.
Identities = 274/418 (65%), Positives = 326/418 (77%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS+ER+GKIVDGRCH+LT+S VR+RH E+ P+C+FYE FD G+E + PG+YSI L
Sbjct: 121 VSREREGKIVDGRCHALTASYVRERHNYDESTPICNFYEGFDMEGKEQLMPPGIYSIDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K+ GR+ CPYFLAR I+HA+IVVYSYHYLLDPKIA VSKEL++SSVVVFDEAHNID
Sbjct: 181 KDYGRDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAESVSKELSKSSVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INRR +EK+ NIQ LE T+ EM+E D KL+EEY RLVEGL+DA+ ARE
Sbjct: 241 NVCIDSMSVKINRRILEKSSANIQLLEKTVAEMREDDVNKLKEEYDRLVEGLKDARVARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD++LANPVLPDE+LQEV+PGNIR AEHF+ FLKRF+EYLKTRLRVQ VVQESPA FL+D
Sbjct: 301 TDIILANPVLPDEVLQEVIPGNIRNAEHFICFLKRFVEYLKTRLRVQHVVQESPAAFLRD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ +KV IERK LRFCA
Sbjct: 361 --------------------------------------------VQAKVSIERKLLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL S LRT+EIT+LTDFS ++++THLATLVS+YTKGF IIVEPF DK+PTV NP+L+F
Sbjct: 377 ERLGSFLRTMEITDLTDFSPIILVTHLATLVSTYTKGFTIIVEPFDDKSPTVLNPILHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+KP+FDRFQ+VVITSGTLSPLDMYPKILNF PVIM SF+MTLARPCLLPM+
Sbjct: 437 CLDSSIAMKPIFDRFQSVVITSGTLSPLDMYPKILNFHPVIMSSFTMTLARPCLLPMI 494
Score = 291 bits (744), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 134/196 (68%), Positives = 164/196 (83%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS+ER+GKIVDGRCH+LT+S VR+RH E+ P+C+FYE FD G+E + PG+YSI L
Sbjct: 121 VSREREGKIVDGRCHALTASYVRERHNYDESTPICNFYEGFDMEGKEQLMPPGIYSIDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K+ GR+ CPYFLAR I+HA+IVVYSYHYLLDPKIA VSKEL++SSVVVFDEAHNID
Sbjct: 181 KDYGRDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAESVSKELSKSSVVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INRR +EK+ NIQ LE T+ EM+E D KL+EEY RLVEGL+DA+ ARE
Sbjct: 241 NVCIDSMSVKINRRILEKSSANIQLLEKTVAEMREDDVNKLKEEYDRLVEGLKDARVARE 300
Query: 836 TDVVLANPVLPDEILQ 851
TD++LANPVLPDE+LQ
Sbjct: 301 TDIILANPVLPDEVLQ 316
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/120 (72%), Positives = 102/120 (85%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + +D L V+FPY+YIYPEQYAYM+ELK+ALDAKGHCLLEMPSGTGKT +LLSLIVAYM
Sbjct: 1 MIISVDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHCLLEMPSGTGKTITLLSLIVAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+PLD+TKL+YCSRTVPEIEKV+EEL +L DYY K + + GLVLSSRKN+CIH E
Sbjct: 61 LENPLDITKLIYCSRTVPEIEKVIEELKKLMDYYEKETGSKPKIVGLVLSSRKNMCIHPE 120
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/122 (60%), Positives = 94/122 (77%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYGIM+FADKRF+R DKRSKL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGIMVFADKRFSRIDKRSKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+LTDNL NLSTEEAVQ+SKRWLRQMAQPFTRE+ LG++LL+ +QL ++E+ + E
Sbjct: 694 PKWIQEHLTDNLCNLSTEEAVQISKRWLRQMAQPFTRENQLGLSLLTREQLEKEEYGKIE 753
Query: 936 EE 937
++
Sbjct: 754 QK 755
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 73/90 (81%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S +ETR+D++VIRNYGQLLV+ A VPDG+VCFFTSYLY+ES
Sbjct: 489 CLLP-MIVAKGNDQVTISSKYETREDVAVIRNYGQLLVEFAATVPDGLVCFFTSYLYMES 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
VVA+WYDQG++D LQ+ KLLFIETQD+ ++
Sbjct: 548 VVAAWYDQGVVDQLQRHKLLFIETQDSAET 577
>gi|242024030|ref|XP_002432433.1| TFIIH basal transcription factor complex helicase subunit, putative
[Pediculus humanus corporis]
gi|212517866|gb|EEB19695.1| TFIIH basal transcription factor complex helicase subunit, putative
[Pediculus humanus corporis]
Length = 747
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 271/418 (64%), Positives = 324/418 (77%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER+GK+VDGRCHSLT+S +R++H+ +++P+CDFYE FD GRE + PG YSI +
Sbjct: 108 VSKEREGKVVDGRCHSLTASYIREQHRYNKSVPICDFYEGFDCFGREDSVMPGAYSIDDI 167
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K + G CPYFLAR I A I+VYSYHYLLDPKIANVVSKEL +++VVVFDEAHNID
Sbjct: 168 KNYAQTKGYCPYFLARHLIAQANIIVYSYHYLLDPKIANVVSKELTKTAVVVFDEAHNID 227
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+I+RRTI+K+ IQ LE + E+KE+D+ KL+EEY RLV GLR+A ARE
Sbjct: 228 NVCIDSMSVKIHRRTIDKSTQAIQRLEKNIAEIKESDANKLKEEYNRLVAGLREAGIARE 287
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD++LANPVLP+EIL E +PGNIR AEHF+ FLKRF+EYLKTRLRVQ VVQESPA+FLKD
Sbjct: 288 TDLILANPVLPEEILTESIPGNIRNAEHFISFLKRFVEYLKTRLRVQHVVQESPASFLKD 347
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ KVCIERKPLRFCA
Sbjct: 348 --------------------------------------------VYGKVCIERKPLRFCA 363
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SLLRTLEI + TDF+SLV++THLATLVS+YTKGF II+EPF DKAPTVPNP+L+F
Sbjct: 364 ERLSSLLRTLEIADHTDFTSLVLVTHLATLVSTYTKGFTIIIEPFDDKAPTVPNPILHFS 423
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+KPVFDRFQ+VVITSGTLSPLDMYPKIL+F PVIM SF+MTLARPCLLPM+
Sbjct: 424 CLDSSIAMKPVFDRFQSVVITSGTLSPLDMYPKILDFHPVIMASFTMTLARPCLLPMI 481
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 159/195 (81%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKER+GK+VDGRCHSLT+S +R++H+ +++P+CDFYE FD GRE + PG YSI +
Sbjct: 108 VSKEREGKVVDGRCHSLTASYIREQHRYNKSVPICDFYEGFDCFGREDSVMPGAYSIDDI 167
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K + G CPYFLAR I A I+VYSYHYLLDPKIANVVSKEL +++VVVFDEAHNID
Sbjct: 168 KNYAQTKGYCPYFLARHLIAQANIIVYSYHYLLDPKIANVVSKELTKTAVVVFDEAHNID 227
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+I+RRTI+K+ IQ LE + E+KE+D+ KL+EEY RLV GLR+A ARE
Sbjct: 228 NVCIDSMSVKIHRRTIDKSTQAIQRLEKNIAEIKESDANKLKEEYNRLVAGLREAGIARE 287
Query: 836 TDVVLANPVLPDEIL 850
TD++LANPVLP+EIL
Sbjct: 288 TDLILANPVLPEEIL 302
Score = 162 bits (411), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 93/177 (52%), Positives = 112/177 (63%), Gaps = 7/177 (3%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQYAYM+ELKK LDAKGHCLLEMPSGTGKTT+LLSL+V+YM
Sbjct: 1 MKLCVDGLLVYFPYDYIYPEQYAYMIELKKGLDAKGHCLLEMPSGTGKTTTLLSLVVSYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+PLDVTKL+YCSRTVPEIEKVVEEL LF Y + + M GLV R+ +
Sbjct: 61 LTYPLDVTKLIYCSRTVPEIEKVVEELRLLFKYIEQETGKATKMLGLVSKEREGKVVDGR 120
Query: 543 FETRDDISVIRNYGQLLVDIA-CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQ 598
+ S IR + + C +G CF +SV I I+NY Q
Sbjct: 121 CHSL-TASYIREQHRYNKSVPICDFYEGFDCFGRE----DSVMPGAYSIDDIKNYAQ 172
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 84/115 (73%), Gaps = 6/115 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + L+GKTDYGIMIFADKRF+R+DKR KL
Sbjct: 622 ARL-DYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRNDKRGKL 680
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKE 930
PKWIQE+L DNL NLSTEEAV + K WLRQMAQ FT++D LGV+LL+L+QL +E
Sbjct: 681 PKWIQEHLKDNLCNLSTEEAVHMCKIWLRQMAQDFTKKDQLGVSLLTLEQLNNEE 735
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 76/90 (84%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D++V+RNYGQLLV+I+ VVPDGVVCFFTSYLYLES
Sbjct: 476 CLLP-MIVSKGNDQVAISSRFETREDVAVVRNYGQLLVEISSVVPDGVVCFFTSYLYLES 534
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
VVASWYDQG+++NLQK KLLFIETQDA ++
Sbjct: 535 VVASWYDQGVLNNLQKHKLLFIETQDAAET 564
>gi|91079234|ref|XP_970844.1| PREDICTED: similar to Xeroderma pigmentosum D CG9433-PA [Tribolium
castaneum]
gi|270003570|gb|EFA00018.1| hypothetical protein TcasGA2_TC002825 [Tribolium castaneum]
Length = 759
Score = 567 bits (1461), Expect = e-158, Method: Compositional matrix adjust.
Identities = 276/418 (66%), Positives = 319/418 (76%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS ER+GKIVDG+CH+LT+S +R+RH + P+C +YE F G+E+ + GVYSI L
Sbjct: 121 VSTEREGKIVDGKCHALTASYIRERHNYDDTTPICQYYEGFALDGKESTMPFGVYSIDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K+ GR+ CPYFL+R I +A IVVYSYHYLLDPKIA VVSKEL R SVV+FDEAHNID
Sbjct: 181 KQYGRDRNWCPYFLSRFVISYANIVVYSYHYLLDPKIAEVVSKELTRESVVIFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+IN+R I++A NIQ LE T+ EM+E D KL+EEY RLVEGLRDA AR+
Sbjct: 241 NVCIDSMSVKINKRIIDRASANIQLLERTVAEMREDDHKKLQEEYQRLVEGLRDASVARD 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TDV+LANPVLPD ILQE VPGNIR AEHFV FLKRF+EYLKTRLRVQ VVQESPA FLKD
Sbjct: 301 TDVILANPVLPDAILQEAVPGNIRNAEHFVSFLKRFLEYLKTRLRVQHVVQESPAGFLKD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ SKVCIERKPLRFCA
Sbjct: 361 V--------------------------------------------QSKVCIERKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERLASLLRTLEI++LTDFS ++++THLATLV++YTKGF IIVEPF DK PTV NP+L+F
Sbjct: 377 ERLASLLRTLEISDLTDFSPVILVTHLATLVATYTKGFTIIVEPFDDKTPTVSNPILHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+AIKPVFDRFQTVVITSGTLSPLDMYPKILNF PVIM SF+MTLARPCLLPM+
Sbjct: 437 CLDSSIAIKPVFDRFQTVVITSGTLSPLDMYPKILNFHPVIMSSFTMTLARPCLLPMI 494
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 127/196 (64%), Positives = 155/196 (79%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS ER+GKIVDG+CH+LT+S +R+RH + P+C +YE F G+E+ + GVYSI L
Sbjct: 121 VSTEREGKIVDGKCHALTASYIRERHNYDDTTPICQYYEGFALDGKESTMPFGVYSIDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K+ GR+ CPYFL+R I +A IVVYSYHYLLDPKIA VVSKEL R SVV+FDEAHNID
Sbjct: 181 KQYGRDRNWCPYFLSRFVISYANIVVYSYHYLLDPKIAEVVSKELTRESVVIFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+IN+R I++A NIQ LE T+ EM+E D KL+EEY RLVEGLRDA AR+
Sbjct: 241 NVCIDSMSVKINKRIIDRASANIQLLERTVAEMREDDHKKLQEEYQRLVEGLRDASVARD 300
Query: 836 TDVVLANPVLPDEILQ 851
TDV+LANPVLPD ILQ
Sbjct: 301 TDVILANPVLPDAILQ 316
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/130 (68%), Positives = 106/130 (81%), Gaps = 1/130 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQYAYM ELK+ALDAKGHCLLEMPSGTGKTT++LSL+VAYM
Sbjct: 1 MKLNVDGLIVYFPYDYIYPEQYAYMCELKRALDAKGHCLLEMPSGTGKTTTILSLVVAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSE 542
HP DV KL+YCSRTVPEIEKV+EEL +L +YY K + E ++ GLVLSSRKNLCIH E
Sbjct: 61 LEHPHDVRKLIYCSRTVPEIEKVMEELKKLLEYYEKLDGEYPHLLGLVLSSRKNLCIHPE 120
Query: 543 FETRDDISVI 552
T + ++
Sbjct: 121 VSTEREGKIV 130
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/122 (62%), Positives = 94/122 (77%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + ++GKTDYGIMIFADKRF+RSDKRSKL
Sbjct: 635 ARL-DYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGIMIFADKRFSRSDKRSKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+L D+LTNLSTEEAVQ++KRWLRQMAQPFTRED LGV+LL+L+QL E ++ +
Sbjct: 694 PKWIQEHLKDSLTNLSTEEAVQIAKRWLRQMAQPFTREDQLGVSLLTLEQLQNLEASKIQ 753
Query: 936 EE 937
E+
Sbjct: 754 EQ 755
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 74/90 (82%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D +VIRNYGQLLV+IA VPDG+VCFFTSYLYLES
Sbjct: 489 CLLP-MIVSKGNDQVAISSKFETREDNAVIRNYGQLLVEIAANVPDGIVCFFTSYLYLES 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
VVASWYDQG+ID+LQ+ KLLFIETQD+ ++
Sbjct: 548 VVASWYDQGVIDSLQRYKLLFIETQDSAET 577
>gi|321463407|gb|EFX74423.1| hypothetical protein DAPPUDRAFT_324413 [Daphnia pulex]
Length = 760
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 269/418 (64%), Positives = 318/418 (76%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER+GK+VDGRC+ LT+S VR RH + +PVC+FYE FDA G+E PL PGVY++ L
Sbjct: 121 VSKEREGKVVDGRCYGLTASFVRARHAGDDAVPVCNFYEGFDAHGKEFPLPPGVYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE G+ G CPYFLAR I HA IVVYSYHYLLDPKIA VVSKE++++SVVVFDEAHNID
Sbjct: 181 KEYGQAKGWCPYFLARYTITHANIVVYSYHYLLDPKIAEVVSKEISKTSVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+I +R ++K +IQ LE T+ MKE D+ +L +EY RLVEGLRDA ARE
Sbjct: 241 NVCIDSMSVKITKRLLDKCSNSIQILETTISNMKENDNRRLEKEYQRLVEGLRDANIARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD+ L NPVLP EIL+E VPG IRTAEHFV FLKR +EY+KTRLRVQ VVQESPA FL+D
Sbjct: 301 TDMALVNPVLPSEILEEAVPGTIRTAEHFVAFLKRVVEYIKTRLRVQHVVQESPAGFLRD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
I H+ KVCI+RKPLRF A
Sbjct: 361 I---------------------HI-----------------------KVCIDRKPLRFTA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SL+RTLEI++LTDFS LV ++H ATLVS+YTKGF II+EPF D+APTV NP+LYF
Sbjct: 377 ERLSSLIRTLEISDLTDFSPLVTVSHFATLVSTYTKGFTIIIEPFEDRAPTVSNPILYFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+AIKPVF+RFQTVVITSGTLSPLDMYPKIL+F PVIM SF+MTLARPC+LPM+
Sbjct: 437 CLDSSIAIKPVFNRFQTVVITSGTLSPLDMYPKILDFHPVIMTSFTMTLARPCILPMI 494
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 129/197 (65%), Positives = 157/197 (79%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SVSKER+GK+VDGRC+ LT+S VR RH + +PVC+FYE FDA G+E PL PGVY++
Sbjct: 120 SVSKEREGKVVDGRCYGLTASFVRARHAGDDAVPVCNFYEGFDAHGKEFPLPPGVYNLDD 179
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
LKE G+ G CPYFLAR I HA IVVYSYHYLLDPKIA VVSKE++++SVVVFDEAHNI
Sbjct: 180 LKEYGQAKGWCPYFLARYTITHANIVVYSYHYLLDPKIAEVVSKEISKTSVVVFDEAHNI 239
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC+DS+SV+I +R ++K +IQ LE T+ MKE D+ +L +EY RLVEGLRDA AR
Sbjct: 240 DNVCIDSMSVKITKRLLDKCSNSIQILETTISNMKENDNRRLEKEYQRLVEGLRDANIAR 299
Query: 835 ETDVVLANPVLPDEILQ 851
ETD+ L NPVLP EIL+
Sbjct: 300 ETDMALVNPVLPSEILE 316
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/136 (68%), Positives = 108/136 (79%), Gaps = 3/136 (2%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM+ELK ALDAKGHCLLEMPSGTGKTT+LLSLIVAYM
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKHALDAKGHCLLEMPSGTGKTTTLLSLIVAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
AHPLD+TKL+YCSRTVPEIEKV+EEL +L +YY K E N+ GL LSSRKNLCIH
Sbjct: 61 KAHPLDLTKLVYCSRTVPEIEKVMEELRKLMNYYEKEMGMEQNILGLALSSRKNLCIHPS 120
Query: 543 FETRDDISVI--RNYG 556
+ V+ R YG
Sbjct: 121 VSKEREGKVVDGRCYG 136
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 85/115 (73%), Gaps = 6/115 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYGIMI ADKRF+R+DKRSKL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCLGRCMRGKTDYGIMILADKRFSRADKRSKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKE 930
PKWIQE+L D NLSTEE VQ+SKRWLRQMAQPF+RED LG++LL+L+QL +E
Sbjct: 694 PKWIQEHLKDTNCNLSTEECVQISKRWLRQMAQPFSREDQLGISLLTLEQLQSEE 748
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 72/90 (80%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S +ETR+D +VIRNYG LLV++A VPDG+VCFFTSYLYLE+
Sbjct: 489 CILP-MIVSKGNDQVAMSSRYETREDTAVIRNYGNLLVEVAAAVPDGIVCFFTSYLYLET 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+V+SWYDQGIID LQ+ KLLFIETQDA ++
Sbjct: 548 IVSSWYDQGIIDQLQRHKLLFIETQDAAET 577
>gi|260830571|ref|XP_002610234.1| hypothetical protein BRAFLDRAFT_286830 [Branchiostoma floridae]
gi|229295598|gb|EEN66244.1| hypothetical protein BRAFLDRAFT_286830 [Branchiostoma floridae]
Length = 763
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 253/418 (60%), Positives = 321/418 (76%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS + GK VDGRCH +T+S VR RH+ ++PVCDFYE+FDA+GRE L PG+Y++ +
Sbjct: 121 VSTLQFGKEVDGRCHQMTASFVRSRHERDPDVPVCDFYERFDALGRETLLPPGIYNLDDM 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K++GRE G CPYF+AR AI +A IVVYSYHYLLDPKIA++VSKELA++SVVVFDEAHNID
Sbjct: 181 KDVGREKGYCPYFMARYAITYANIVVYSYHYLLDPKIADLVSKELAKNSVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV INRR +++ N++ L T++ +K+ D +LR+EY+RLVEGLR+A ARE
Sbjct: 241 NVCIDSMSVTINRRMLDRCQTNVEALTRTVQRLKDTDQQRLRQEYSRLVEGLREANVARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TDVVL+NPVLPDE+LQE VPGNIRTAEHFVGF+KRF+EYLK+RLR+Q VVQE+PA+FLKD
Sbjct: 301 TDVVLSNPVLPDEVLQEAVPGNIRTAEHFVGFMKRFLEYLKSRLRIQHVVQETPASFLKD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ KVC++RKPLRFC+
Sbjct: 361 --------------------------------------------LKEKVCLDRKPLRFCS 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLEI +LTDFS L+++ + ATLVS+Y KGF +I+EPF D+ PT+ NP+L F
Sbjct: 377 ERLNSLIRTLEIADLTDFSPLILLANFATLVSTYMKGFTLIMEPFDDRTPTISNPILNFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+S+AIKPVFDRFQ+VVITSGTLSPLDMYPKIL+F+PV M SF+MTLARPC+ PM+
Sbjct: 437 CMDASIAIKPVFDRFQSVVITSGTLSPLDMYPKILDFRPVNMASFTMTLARPCICPMI 494
Score = 275 bits (704), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 125/196 (63%), Positives = 162/196 (82%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS + GK VDGRCH +T+S VR RH+ ++PVCDFYE+FDA+GRE L PG+Y++ +
Sbjct: 121 VSTLQFGKEVDGRCHQMTASFVRSRHERDPDVPVCDFYERFDALGRETLLPPGIYNLDDM 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K++GRE G CPYF+AR AI +A IVVYSYHYLLDPKIA++VSKELA++SVVVFDEAHNID
Sbjct: 181 KDVGREKGYCPYFMARYAITYANIVVYSYHYLLDPKIADLVSKELAKNSVVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV INRR +++ N++ L T++ +K+ D +LR+EY+RLVEGLR+A ARE
Sbjct: 241 NVCIDSMSVTINRRMLDRCQTNVEALTRTVQRLKDTDQQRLRQEYSRLVEGLREANVARE 300
Query: 836 TDVVLANPVLPDEILQ 851
TDVVL+NPVLPDE+LQ
Sbjct: 301 TDVVLSNPVLPDEVLQ 316
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/123 (70%), Positives = 99/123 (80%), Gaps = 1/123 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + ID L V FPY+YIYPEQY+YMVELK++LDAKGHC+LEMPSGTGKT SLLSLIVAY+
Sbjct: 1 MKINIDGLLVLFPYDYIYPEQYSYMVELKRSLDAKGHCVLEMPSGTGKTVSLLSLIVAYL 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
P DV KL+YCSRTVPEIEKV+EEL +L +YY K E N+ GL LSSRKNLCIH E
Sbjct: 61 KTSPKDVCKLIYCSRTVPEIEKVLEELRKLMEYYEKETGEPPNLIGLALSSRKNLCIHPE 120
Query: 543 FET 545
T
Sbjct: 121 VST 123
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/122 (56%), Positives = 91/122 (74%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GKTDYG+M+FADKRFARSDKR KL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRVLRGKTDYGVMVFADKRFARSDKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQEYL+D + NL+T+EAVQ+SK++LRQMAQPF RED LG++LL+L+QL +E +
Sbjct: 694 PKWIQEYLSDGMCNLTTDEAVQVSKKFLRQMAQPFRREDQLGLSLLTLEQLQTEEMKKRA 753
Query: 936 EE 937
++
Sbjct: 754 QQ 755
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 4/124 (3%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P +V + + S FE+R+D+++IRNYG LLVD++ VVPDG+V FFTSY Y+ES
Sbjct: 489 CICP-MIVGRGNDQVTMTSKFESREDVAIIRNYGNLLVDMSAVVPDGIVAFFTSYSYMES 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKA 683
VA+WY+QGII+N+Q+ KLLFIETQ A ++ ++ +GR L S + R K
Sbjct: 548 TVAAWYEQGIIENVQRNKLLFIETQSAAETSVALQKYQEACENGRGAILLSVA---RGKV 604
Query: 684 GENI 687
E I
Sbjct: 605 SEGI 608
>gi|157132567|ref|XP_001656074.1| DNA repair helicase rad3/xp-d [Aedes aegypti]
gi|108884369|gb|EAT48594.1| AAEL000404-PA [Aedes aegypti]
Length = 760
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 266/418 (63%), Positives = 314/418 (75%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKERDGKIVD +C+ +T+S VR+R +++ VC +YE F A G+E+ L PGVYSI L
Sbjct: 121 VSKERDGKIVDAKCYGMTASYVRERATTDDSVAVCQYYEGFQAEGKESTLPPGVYSIDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K+ GRE CPYFL+R AI A +VVYSYHYLLDPKIA VVSKELA+ SVVV DEAHNID
Sbjct: 181 KDFGRERNWCPYFLSRFAINQAHVVVYSYHYLLDPKIAEVVSKELAKESVVVCDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVCVDS+SV+INRR IEK+ + TLE + EMKE D +L +EY RLV+GL+DA ARE
Sbjct: 241 NVCVDSMSVKINRRLIEKSTTGVHTLEKYVAEMKEDDRKRLNDEYLRLVQGLKDASFARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD+VLANPVLP EIL+EVVPGNIR A+HF+ FLKRFIEY+K+RLRVQ VVQESPA FLKD
Sbjct: 301 TDMVLANPVLPTEILKEVVPGNIRNADHFLSFLKRFIEYIKSRLRVQHVVQESPAGFLKD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
I QQ KVCIERKPLRFCA
Sbjct: 361 I-----------------------------QQ---------------KVCIERKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SLLRTLEIT+LT+F L VIT ATLVS+YTKGF II+EPF DK PTV NP+L+
Sbjct: 377 ERLSSLLRTLEITDLTEFGPLTVITSFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHLS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+DSS+A+KP+F RFQ+VVITSGTLSP+DMYPKIL+F+PV+M SF+MTLARPCLLPM+
Sbjct: 437 CMDSSIAMKPIFQRFQSVVITSGTLSPMDMYPKILDFEPVVMSSFTMTLARPCLLPMI 494
Score = 263 bits (673), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 127/196 (64%), Positives = 153/196 (78%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKERDGKIVD +C+ +T+S VR+R +++ VC +YE F A G+E+ L PGVYSI L
Sbjct: 121 VSKERDGKIVDAKCYGMTASYVRERATTDDSVAVCQYYEGFQAEGKESTLPPGVYSIDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K+ GRE CPYFL+R AI A +VVYSYHYLLDPKIA VVSKELA+ SVVV DEAHNID
Sbjct: 181 KDFGRERNWCPYFLSRFAINQAHVVVYSYHYLLDPKIAEVVSKELAKESVVVCDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVCVDS+SV+INRR IEK+ + TLE + EMKE D +L +EY RLV+GL+DA ARE
Sbjct: 241 NVCVDSMSVKINRRLIEKSTTGVHTLEKYVAEMKEDDRKRLNDEYLRLVQGLKDASFARE 300
Query: 836 TDVVLANPVLPDEILQ 851
TD+VLANPVLP EIL+
Sbjct: 301 TDMVLANPVLPTEILK 316
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/136 (64%), Positives = 105/136 (77%), Gaps = 3/136 (2%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + +D L V+FPYEYIYPEQYAYM+ELK+ DAKGHCLLEMPSGTGKTT+LLSLIVAY+
Sbjct: 1 MRISVDGLLVYFPYEYIYPEQYAYMLELKRTFDAKGHCLLEMPSGTGKTTTLLSLIVAYI 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSE 542
+P V KL+YCSRTVPEIEKV+ EL L +YY K + N+TGLVLSSRKN+CIHSE
Sbjct: 61 MENPHIVRKLIYCSRTVPEIEKVIAELKHLMNYYEKQTGVMPNITGLVLSSRKNMCIHSE 120
Query: 543 FETRDDISVI--RNYG 556
D ++ + YG
Sbjct: 121 VSKERDGKIVDAKCYG 136
Score = 150 bits (379), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/122 (62%), Positives = 91/122 (74%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + ++GKTDYGIMIFADKRF R DKR KL
Sbjct: 635 ARL-DYLRDQFQIRENDFLTFDALRHAAQCVGRAIRGKTDYGIMIFADKRFGRQDKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+LTDNLTNLSTEEA+QL+KRWLRQMAQPFTRED LGV+LL+L+QL E + E
Sbjct: 694 PKWIQEHLTDNLTNLSTEEAMQLAKRWLRQMAQPFTREDQLGVSLLTLEQLQSMEKEKLE 753
Query: 936 EE 937
++
Sbjct: 754 KQ 755
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D +V RNYGQLLV+ A VPDG+VCFFTSYLYLES
Sbjct: 489 CLLP-MIVSRGNDQVAISSKFETREDTAVTRNYGQLLVETAKTVPDGIVCFFTSYLYLES 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQD 649
VVASWYDQGIID L + KLLFIETQD
Sbjct: 548 VVASWYDQGIIDTLLRYKLLFIETQD 573
>gi|347365666|gb|AEO89688.1| ercc2 [Danio rerio]
Length = 760
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 255/418 (61%), Positives = 313/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS R GK VDG+CHSLT+S +R +H++ N PVC FYE+FD VGR+ P+ PG+Y++ L
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQHQSNPNQPVCQFYEEFDNVGRQVPIPPGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K+ GR G CPYFLAR A++HA IVVYSYHYLLDPKIA++VSKELA+ SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYFLARYALLHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV I RRT+++ N++TL+ T+ +KE D+AKLREEY RLVEGL++A ARE
Sbjct: 241 NVCIDSMSVNITRRTLDRCQTNVETLQNTISRIKETDAAKLREEYRRLVEGLKEANVARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD+ L+NPVLPDEILQE VPG+IRTAEHFVGF+KRF+EYLK RLR+ VVQES FLKD
Sbjct: 301 TDIYLSNPVLPDEILQEAVPGSIRTAEHFVGFMKRFLEYLKARLRIHHVVQESAPQFLKD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
I KVCI+RKPLRFCA
Sbjct: 361 --------------------------------------------IFEKVCIDRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLLRTLEI ++ DFS + +I+H ATLVS+Y+KGF II+EPF DK PT+ NPVL+F
Sbjct: 377 ERLRSLLRTLEIADIADFSPITLISHFATLVSTYSKGFTIIIEPFEDKTPTIANPVLHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D S+AIKPVF RFQTV+ITSGTLSPLD+YP+IL+F+PV M SF+MTLAR CL P++
Sbjct: 437 CMDPSIAIKPVFGRFQTVIITSGTLSPLDIYPRILDFRPVTMASFTMTLARTCLCPLI 494
Score = 282 bits (721), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 128/196 (65%), Positives = 161/196 (82%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS R GK VDG+CHSLT+S +R +H++ N PVC FYE+FD VGR+ P+ PG+Y++ L
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQHQSNPNQPVCQFYEEFDNVGRQVPIPPGIYNLDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K+ GR G CPYFLAR A++HA IVVYSYHYLLDPKIA++VSKELA+ SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYFLARYALLHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV I RRT+++ N++TL+ T+ +KE D+AKLREEY RLVEGL++A ARE
Sbjct: 241 NVCIDSMSVNITRRTLDRCQTNVETLQNTISRIKETDAAKLREEYRRLVEGLKEANVARE 300
Query: 836 TDVVLANPVLPDEILQ 851
TD+ L+NPVLPDEILQ
Sbjct: 301 TDIYLSNPVLPDEILQ 316
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/120 (71%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L ID L V+FPY+YIYPEQY+YM+ELK+ LDAKGH +LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKLNIDGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN-MTGLVLSSRKNLCIHSE 542
+PL+VTKL+YCSRTVPEIEKVVEEL +L DYY K N L LSSRKNLCIH E
Sbjct: 61 KTYPLEVTKLVYCSRTVPEIEKVVEELRKLMDYYSKQTGVKNDFLALALSSRKNLCIHPE 120
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/111 (57%), Positives = 81/111 (72%), Gaps = 6/111 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+MIFADKR+AR+DKR KL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMIFADKRYARADKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
P+WIQE+LTD NL+ +E VQLSK +LRQMAQPF RED LG++LL+L+QL
Sbjct: 694 PRWIQEHLTDGSLNLTIDETVQLSKHFLRQMAQPFRREDQLGLSLLTLEQL 744
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 91/138 (65%), Gaps = 11/138 (7%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+D +VIRNYG LL++++ +VPDG+V FFTSY+Y+E++VASWY+QGI++N+Q+
Sbjct: 504 MTSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFTSYMYMENIVASWYEQGILENIQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAV 699
KL+FIETQDA ++ ++ +GR L S + R K E I DF F
Sbjct: 564 NKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA---RGKVSEGI---DFVHHF--- 614
Query: 700 GREAPL--APGVYSITKL 715
GR + P VY+ +++
Sbjct: 615 GRAVIMFGVPYVYTQSRI 632
>gi|195430790|ref|XP_002063431.1| GK21904 [Drosophila willistoni]
gi|194159516|gb|EDW74417.1| GK21904 [Drosophila willistoni]
Length = 769
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 254/418 (60%), Positives = 311/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER+GK VDG+C+ LT+S VRDRH+ P+C ++E F G+EA L G+YSI +
Sbjct: 121 VSKEREGKAVDGKCYGLTASYVRDRHEMDAETPICQYFEGFSLEGKEAALPVGIYSIDDM 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GR CPYF+AR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 181 KEFGRSRNWCPYFMARHAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INRRT+E++ + L ++E++E D+ +L EEY R+V+GL+DA R+
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNQLTKLVQEIREEDTNRLNEEYQRMVQGLKDATVQRD 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD++LANPVLP+++L EVVPGNIR A+HF+ FL+RFIEY+KTRLRV VVQES A FLKD
Sbjct: 301 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESSAGFLKD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
IS SK+CIERKPLRFCA
Sbjct: 361 IS--------------------------------------------SKICIERKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SLLRTLEIT+LT+F +L +ITH ATLVS+YTKGF II+EPF DK PTV NP+LYF
Sbjct: 377 ERLSSLLRTLEITDLTEFGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILYFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+DSS+A+ PVF RFQTVVITSGTLSP+DMYPKIL+F PV+M SF+MTLARPCLLPM+
Sbjct: 437 CMDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMI 494
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 115/195 (58%), Positives = 151/195 (77%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKER+GK VDG+C+ LT+S VRDRH+ P+C ++E F G+EA L G+YSI +
Sbjct: 121 VSKEREGKAVDGKCYGLTASYVRDRHEMDAETPICQYFEGFSLEGKEAALPVGIYSIDDM 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE GR CPYF+AR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 181 KEFGRSRNWCPYFMARHAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INRRT+E++ + L ++E++E D+ +L EEY R+V+GL+DA R+
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNQLTKLVQEIREEDTNRLNEEYQRMVQGLKDATVQRD 300
Query: 836 TDVVLANPVLPDEIL 850
TD++LANPVLP+++L
Sbjct: 301 TDMILANPVLPNDVL 315
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 86/120 (71%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPYEYIYPEQYAYM+ELK++LDAKGHCLLEMPSGTGKT +LLSLIVAYM
Sbjct: 1 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEE-INMTGLVLSSRKNLCIHSE 542
HP + KL+YCSRTVPEIEKV+ EL L YY +H++ MTGLVLSSRKN+CIH E
Sbjct: 61 IEHPETIRKLIYCSRTVPEIEKVIAELQNLMVYYERHSDNPPAMTGLVLSSRKNMCIHPE 120
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/122 (59%), Positives = 89/122 (72%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + L+GKTDYGIMIFADKRF+R DKRS+L
Sbjct: 635 ARL-DYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRQDKRSRL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+L D+ NLSTEEAVQL++RWLR+MAQPFTRED LG++LL+L QL EH + E
Sbjct: 694 PKWIQEHLVDSFCNLSTEEAVQLARRWLRRMAQPFTREDQLGISLLTLAQLETMEHEKLE 753
Query: 936 EE 937
+
Sbjct: 754 RQ 755
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D +VIRNYGQLLV++A VPDGVVCFFTSYLYLES
Sbjct: 489 CLLP-MIVSKGNDQVAISSKFETREDTAVIRNYGQLLVEVAKTVPDGVVCFFTSYLYLES 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQD 649
VVASWYDQGI+D L + KLLFIETQD
Sbjct: 548 VVASWYDQGIVDTLLRYKLLFIETQD 573
>gi|195123085|ref|XP_002006040.1| GI20811 [Drosophila mojavensis]
gi|193911108|gb|EDW09975.1| GI20811 [Drosophila mojavensis]
Length = 745
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 253/418 (60%), Positives = 312/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER+GK VDG+C+ LT+S +R+RH+ +P+C ++E F G+E+ L GVYSI L
Sbjct: 97 VSKEREGKAVDGKCYGLTASYIRERHELDPEVPICQYFEGFTLEGKESTLPVGVYSIDDL 156
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE+ R S VVFDEAHNID
Sbjct: 157 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMTRESCVVFDEAHNID 216
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INRRT+E++ + L ++EM+E D+ +L EEY R+V+GL+DA R+
Sbjct: 217 NVCIDSMSVKINRRTVERSTNALNQLTKLVQEMREEDTNRLNEEYQRMVQGLKDASVQRD 276
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD++LANPVLP+++L EVVPGNIR A+HF+ FL+RFIEY+KTRLRV VVQESPA FLKD
Sbjct: 277 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 336
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+S SK+CIERKPLRFCA
Sbjct: 337 VS--------------------------------------------SKICIERKPLRFCA 352
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SLLRTLEIT++T+F +L +ITH ATLVS+YTKGF II+EPF DK PTV NP+++F
Sbjct: 353 ERLSSLLRTLEITDMTEFGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPIMHFS 412
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+ PVF RFQTVVITSGTLSP+DMYPKIL+F PV+M SF+MTLARPCLLPM+
Sbjct: 413 CLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMI 470
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 116/195 (59%), Positives = 151/195 (77%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKER+GK VDG+C+ LT+S +R+RH+ +P+C ++E F G+E+ L GVYSI L
Sbjct: 97 VSKEREGKAVDGKCYGLTASYIRERHELDPEVPICQYFEGFTLEGKESTLPVGVYSIDDL 156
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE+ R S VVFDEAHNID
Sbjct: 157 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMTRESCVVFDEAHNID 216
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INRRT+E++ + L ++EM+E D+ +L EEY R+V+GL+DA R+
Sbjct: 217 NVCIDSMSVKINRRTVERSTNALNQLTKLVQEMREEDTNRLNEEYQRMVQGLKDASVQRD 276
Query: 836 TDVVLANPVLPDEIL 850
TD++LANPVLP+++L
Sbjct: 277 TDMILANPVLPNDVL 291
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/122 (57%), Positives = 88/122 (72%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + L+GKTDYGIMIFADKRF+R DKRS+L
Sbjct: 611 ARL-DYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRQDKRSRL 669
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+L D+ NLSTEEAVQL++RWLR+MAQPF+RED LG++LL+L QL E + E
Sbjct: 670 PKWIQEHLVDSFCNLSTEEAVQLARRWLRRMAQPFSREDQLGISLLTLAQLETMEQEKLE 729
Query: 936 EE 937
+
Sbjct: 730 RQ 731
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 77/97 (79%), Gaps = 3/97 (3%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M+ELK++LDAKGHCLLEMPSGTGKT +LLSL+VAYM HP V KL+YCSRTVPEIEKV+
Sbjct: 1 MLELKRSLDAKGHCLLEMPSGTGKTATLLSLVVAYMIEHPETVRKLIYCSRTVPEIEKVI 60
Query: 508 EELARLFDYYIKHNEEI--NMTGLVLSSRKNLCIHSE 542
EL L YY + N + TGLVLSSRKNLCIH E
Sbjct: 61 AELQNLMAYY-ERNAPVAPGFTGLVLSSRKNLCIHPE 96
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D +VIRNYGQLLV++A VPDG+VCFFTSYLYLES
Sbjct: 465 CLLP-MIVSKGNDQVAISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLES 523
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQD 649
VVASWYDQGI+D L + KLLFIETQD
Sbjct: 524 VVASWYDQGIVDTLLRYKLLFIETQD 549
>gi|170068974|ref|XP_001869063.1| TFIIH basal transcription factor complex helicase subunit [Culex
quinquefasciatus]
gi|167864971|gb|EDS28354.1| TFIIH basal transcription factor complex helicase subunit [Culex
quinquefasciatus]
Length = 542
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 263/418 (62%), Positives = 312/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKERDGKIVD +C+ +T+S VRDR +++P+C ++E F A G+E L PGVYSI +
Sbjct: 166 VSKERDGKIVDAKCYGMTASYVRDRAATDDSVPICQYFEGFQAEGKETTLPPGVYSIDDM 225
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GRE CPYF++R AI A +VVYSYHYLLDPKIA VVSKELAR SVVV DEAHNID
Sbjct: 226 KEFGRERNWCPYFMSRFAINQAHVVVYSYHYLLDPKIAEVVSKELARESVVVCDEAHNID 285
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVCVDS+SV+INRR IEK+ + TLE + EMK+ D +L +EY RLV+GL+DA RE
Sbjct: 286 NVCVDSMSVKINRRLIEKSTTGVHTLEKYVAEMKDDDRRRLNDEYLRLVQGLKDAAMQRE 345
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD+VLANP LP EIL+EVVPGNIR A+HF+ FLKRFIEY+K+RLRVQ VVQESPA FLKD
Sbjct: 346 TDMVLANPALPSEILKEVVPGNIRNADHFLSFLKRFIEYIKSRLRVQHVVQESPAGFLKD 405
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
I QQ KVCIERKPLRFCA
Sbjct: 406 I-----------------------------QQ---------------KVCIERKPLRFCA 421
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SLLRTLEIT+LT+F L VIT ATLVSSYTKGF II+EPF DK PTV NP+++
Sbjct: 422 ERLSSLLRTLEITDLTEFGPLTVITSFATLVSSYTKGFTIIIEPFDDKTPTVSNPIMHLS 481
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+DSS+A+KP+F RFQ+VVITSGTLSP+DMYPKIL+F+PV+M SF+MTLARPCLLPM+
Sbjct: 482 CMDSSIAMKPIFQRFQSVVITSGTLSPMDMYPKILDFEPVVMSSFTMTLARPCLLPMI 539
Score = 262 bits (670), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 134/244 (54%), Positives = 172/244 (70%), Gaps = 20/244 (8%)
Query: 621 LESVVA------SWYDQ--GIIDN-----LQKRKLLFIETQDALDSRSVSKERDGKIVDG 667
+E V+A ++Y++ G++ N L RK + I ++ VSKERDGKIVD
Sbjct: 125 IEKVIAELKHLMNYYEKQTGVMPNITGLVLSSRKNMCIHSE-------VSKERDGKIVDA 177
Query: 668 RCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPY 727
+C+ +T+S VRDR +++P+C ++E F A G+E L PGVYSI +KE GRE CPY
Sbjct: 178 KCYGMTASYVRDRAATDDSVPICQYFEGFQAEGKETTLPPGVYSIDDMKEFGRERNWCPY 237
Query: 728 FLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 787
F++R AI A +VVYSYHYLLDPKIA VVSKELAR SVVV DEAHNIDNVCVDS+SV+IN
Sbjct: 238 FMSRFAINQAHVVVYSYHYLLDPKIAEVVSKELARESVVVCDEAHNIDNVCVDSMSVKIN 297
Query: 788 RRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPD 847
RR IEK+ + TLE + EMK+ D +L +EY RLV+GL+DA RETD+VLANP LP
Sbjct: 298 RRLIEKSTTGVHTLEKYVAEMKDDDRRRLNDEYLRLVQGLKDAAMQRETDMVLANPALPS 357
Query: 848 EILQ 851
EIL+
Sbjct: 358 EILK 361
Score = 176 bits (446), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/132 (65%), Positives = 103/132 (78%), Gaps = 3/132 (2%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
+D L V+FPYEYIYPEQYAYM+ELK+ DAKGHCLLEMPSGTGKTT+LLSLIVAY+ +P
Sbjct: 50 VDGLLVYFPYEYIYPEQYAYMLELKRTFDAKGHCLLEMPSGTGKTTTLLSLIVAYIMENP 109
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSEFETR 546
V KL+YCSRTVPEIEKV+ EL L +YY K + N+TGLVLSSRKN+CIHSE
Sbjct: 110 HIVRKLIYCSRTVPEIEKVIAELKHLMNYYEKQTGVMPNITGLVLSSRKNMCIHSEVSKE 169
Query: 547 DDISVI--RNYG 556
D ++ + YG
Sbjct: 170 RDGKIVDAKCYG 181
>gi|41055526|ref|NP_957220.1| TFIIH basal transcription factor complex helicase subunit [Danio
rerio]
gi|29437217|gb|AAH49410.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 2 [Danio rerio]
Length = 643
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 255/418 (61%), Positives = 313/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS R GK VDG+CHSLT+S +R +H++ N PVC FYE+FD VGR+ P+ PG+Y++ L
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQHQSNPNQPVCQFYEEFDNVGRQVPIPPGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K+ GR G CPYFLAR A++HA IVVYSYHYLLDPKIA++VSKELA+ SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYFLARYALLHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV I RRT+++ N++TL+ T+ +KE D+AKLREEY RLVEGL++A ARE
Sbjct: 241 NVCIDSMSVNITRRTLDRCQTNVETLQNTISRIKETDAAKLREEYRRLVEGLKEANVARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD+ L+NPVLPDEILQE VPG+IRTAEHFVGF+KRF+EYLK RLR+ VVQES FLKD
Sbjct: 301 TDIYLSNPVLPDEILQEAVPGSIRTAEHFVGFMKRFLEYLKARLRIHHVVQESAPQFLKD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
I KVCI+RKPLRFCA
Sbjct: 361 --------------------------------------------IFEKVCIDRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLLRTLEI ++ DFS + +I+H ATLVS+Y+KGF II+EPF DK PT+ NPVL+F
Sbjct: 377 ERLRSLLRTLEIADIADFSPITLISHFATLVSTYSKGFTIIIEPFEDKTPTIANPVLHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D S+AIKPVF RFQTV+ITSGTLSPLD+YP+IL+F+PV M SF+MTLAR CL P++
Sbjct: 437 CMDPSIAIKPVFGRFQTVIITSGTLSPLDIYPRILDFRPVTMASFTMTLARTCLCPLI 494
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 128/196 (65%), Positives = 161/196 (82%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS R GK VDG+CHSLT+S +R +H++ N PVC FYE+FD VGR+ P+ PG+Y++ L
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQHQSNPNQPVCQFYEEFDNVGRQVPIPPGIYNLDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K+ GR G CPYFLAR A++HA IVVYSYHYLLDPKIA++VSKELA+ SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYFLARYALLHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV I RRT+++ N++TL+ T+ +KE D+AKLREEY RLVEGL++A ARE
Sbjct: 241 NVCIDSMSVNITRRTLDRCQTNVETLQNTISRIKETDAAKLREEYRRLVEGLKEANVARE 300
Query: 836 TDVVLANPVLPDEILQ 851
TD+ L+NPVLPDEILQ
Sbjct: 301 TDIYLSNPVLPDEILQ 316
Score = 172 bits (437), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 86/120 (71%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L ID L V+FPY+YIYPEQY+YM+ELK+ LDAKGH +LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKLNIDGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN-MTGLVLSSRKNLCIHSE 542
+PL+VTKL+YCSRTVPEIEKVVEEL +L DYY K N L LSSRKNLCIH E
Sbjct: 61 KTYPLEVTKLVYCSRTVPEIEKVVEELRKLMDYYSKQTGVKNDFLALALSSRKNLCIHPE 120
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 78/108 (72%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+D +VIRNYG LL++++ +VPDG+V FFTSY+Y+E++VASWY+QGI++N+Q+
Sbjct: 504 MTSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFTSYMYMENIVASWYEQGILENIQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+FIETQDA ++ ++ +GR L S + R K E I
Sbjct: 564 NKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA---RGKVSEGI 608
>gi|348537926|ref|XP_003456443.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like [Oreochromis niloticus]
Length = 760
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 253/418 (60%), Positives = 315/418 (75%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS R GK VDG+CHSLT+S +R +H + N+PVC FYE+FD+VGR+ PL G+Y++ L
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQHHSNPNLPVCRFYEEFDSVGRQVPLPAGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K GR G CPY+LAR +I+HA IVVYSYHYLLDPKIA++VSKELA+ SVVVFDEAHNID
Sbjct: 181 KAFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV I RRT+++ N+ TL+ T+ ++KE D+AKLREEY RLVEGL++A ARE
Sbjct: 241 NVCIDSMSVNITRRTLDRCQNNVDTLQNTIHKIKETDAAKLREEYRRLVEGLKEANVARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD+ LANPVLPDEILQE VPG+IRTAEHFVGF++RF+EYLK+RLRVQ VVQES FLKD
Sbjct: 301 TDIYLANPVLPDEILQEAVPGSIRTAEHFVGFMRRFLEYLKSRLRVQHVVQESAPQFLKD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
I KVCI+RKPLRFCA
Sbjct: 361 --------------------------------------------IFDKVCIDRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLLRTLEI ++ DFS++ +I++ ATLVS+Y++GF II+EPF D+ PT+ NPVL+F
Sbjct: 377 ERLQSLLRTLEIADIADFSAVTLISNFATLVSTYSQGFTIIIEPFEDRTPTIANPVLHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D S+AIKPVF RFQ+VVITSGTLSPLD+YP+IL+F+PV M SF+MTLAR CL P++
Sbjct: 437 CMDPSIAIKPVFQRFQSVVITSGTLSPLDIYPRILDFRPVTMASFTMTLARTCLCPLI 494
Score = 280 bits (715), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 128/196 (65%), Positives = 160/196 (81%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS R GK VDG+CHSLT+S +R +H + N+PVC FYE+FD+VGR+ PL G+Y++ L
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQHHSNPNLPVCRFYEEFDSVGRQVPLPAGIYNLDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K GR G CPY+LAR +I+HA IVVYSYHYLLDPKIA++VSKELA+ SVVVFDEAHNID
Sbjct: 181 KAFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV I RRT+++ N+ TL+ T+ ++KE D+AKLREEY RLVEGL++A ARE
Sbjct: 241 NVCIDSMSVNITRRTLDRCQNNVDTLQNTIHKIKETDAAKLREEYRRLVEGLKEANVARE 300
Query: 836 TDVVLANPVLPDEILQ 851
TD+ LANPVLPDEILQ
Sbjct: 301 TDIYLANPVLPDEILQ 316
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 85/120 (70%), Positives = 97/120 (80%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L I+ L V+FPY+YIYPEQY+YM+ELK+ LDAKGH +LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A PL+VTKL+YCSRTVPEIEKVVEEL +L ++Y K E N L LSSRKNLCIH E
Sbjct: 61 RAFPLEVTKLIYCSRTVPEIEKVVEELRKLMEFYTKETGESNNFLALALSSRKNLCIHPE 120
Score = 124 bits (310), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 83/115 (72%), Gaps = 6/115 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+MIFADKR+AR+DKR KL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMIFADKRYARADKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKE 930
P+WIQE++ D NL+ +EAVQLSK +LRQMAQPF +ED LG++LL+L+QL +E
Sbjct: 694 PRWIQEHINDGSLNLTVDEAVQLSKHFLRQMAQPFRQEDQLGLSLLTLEQLESEE 748
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 80/116 (68%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S FETR+D +VIRNYG LL++++ +VPDG+V FFTSY+Y+E++VASWY+QGI++N+Q+
Sbjct: 504 LSSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFTSYVYMENIVASWYEQGILENIQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KL+FIETQDA ++ ++ +GR L S + R K E I Y +
Sbjct: 564 NKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 616
>gi|195585328|ref|XP_002082441.1| GD11571 [Drosophila simulans]
gi|194194450|gb|EDX08026.1| GD11571 [Drosophila simulans]
Length = 769
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 253/418 (60%), Positives = 311/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER+GK VDG+C+ LT+S +R+RH P+C ++E F G+E+ L GVYSI L
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRERHDMDAETPICQYFEGFSLEGKESTLPVGVYSIDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA R+
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD++LANPVLP+++L EVVPGNIR A+HF+ FL+RFIEY+KTRLRV VVQESPA FLKD
Sbjct: 301 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
IS SK+CIERKPLRFCA
Sbjct: 361 IS--------------------------------------------SKICIERKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SLLRTLEI++LT+F +L +ITH ATLVS+YTKGF II+EPF DK PTV NP+L+F
Sbjct: 377 ERLSSLLRTLEISDLTEFGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+ PVF RFQTVVITSGTLSP+DMYPKIL+F PV+M SF+MTLARPCLLPM+
Sbjct: 437 CLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMI 494
Score = 252 bits (644), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 114/195 (58%), Positives = 150/195 (76%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKER+GK VDG+C+ LT+S +R+RH P+C ++E F G+E+ L GVYSI L
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRERHDMDAETPICQYFEGFSLEGKESTLPVGVYSIDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA R+
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 300
Query: 836 TDVVLANPVLPDEIL 850
TD++LANPVLP+++L
Sbjct: 301 TDMILANPVLPNDVL 315
Score = 175 bits (444), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 86/120 (71%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPYEYIYPEQYAYM+ELK++LDAKGHCLLEMPSGTGKT +LLSLIVAYM
Sbjct: 1 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
HP V KL+YCSRTVPEIEKV+ EL L YY +H TGLVLSSRKN+CIH E
Sbjct: 61 VEHPETVRKLIYCSRTVPEIEKVIAELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPE 120
Score = 140 bits (353), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 88/122 (72%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + L+GKTDYGIMIFADKRF+R DKRS+L
Sbjct: 635 ARL-DYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRHDKRSRL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+L D+ NLSTEEAVQL++RWLR+MAQPFTRED LG++LL+L QL E + E
Sbjct: 694 PKWIQEHLVDSFCNLSTEEAVQLARRWLRRMAQPFTREDQLGISLLTLAQLENMEQEKLE 753
Query: 936 EE 937
+
Sbjct: 754 RQ 755
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D +VIRNYGQLLV++A VPDG+VCFFTSYLYLES
Sbjct: 489 CLLP-MIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLES 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQD 649
VVASWYDQGI+D L + KLLFIETQD
Sbjct: 548 VVASWYDQGIVDTLLRYKLLFIETQD 573
>gi|194881824|ref|XP_001975021.1| GG22096 [Drosophila erecta]
gi|190658208|gb|EDV55421.1| GG22096 [Drosophila erecta]
Length = 769
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 252/418 (60%), Positives = 312/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER+GK VDG+C+ LT+S +R+RH+ P+C ++E F G+E+ L GVYSI L
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRERHEMDAETPICQYFEGFSMEGKESTLPVGVYSIDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA R+
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNQLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD++LANPVLP+++L EVVPGNIR A+HF+ FL+RFIEY+KTRLRV VVQESPA FLKD
Sbjct: 301 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
IS SK+CIERKPLRFCA
Sbjct: 361 IS--------------------------------------------SKICIERKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SLLRTLEI++LT++ +L +ITH ATLVS+YTKGF II+EPF DK PTV NP+L+F
Sbjct: 377 ERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+ PVF RFQTVVITSGTLSP+DMYPKIL+F PV+M SF+MTLARPCLLPM+
Sbjct: 437 CLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMI 494
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 114/195 (58%), Positives = 151/195 (77%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKER+GK VDG+C+ LT+S +R+RH+ P+C ++E F G+E+ L GVYSI L
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRERHEMDAETPICQYFEGFSMEGKESTLPVGVYSIDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA R+
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNQLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 300
Query: 836 TDVVLANPVLPDEIL 850
TD++LANPVLP+++L
Sbjct: 301 TDMILANPVLPNDVL 315
Score = 173 bits (438), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 85/120 (70%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPYEYIYPEQYAYM+ELK++LDAKGHCLLEMPSGTGKT +LLSLIVAYM
Sbjct: 1 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
HP V KL+YCSRTVPEIEKV+ EL L YY + +TGLVLSSRKN+CIH E
Sbjct: 61 VEHPETVRKLIYCSRTVPEIEKVIAELQNLMVYYERQCPNPPPLTGLVLSSRKNMCIHPE 120
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 88/122 (72%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + L+GKTDYGIMIFADKRF+R DKRS+L
Sbjct: 635 ARL-DYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRHDKRSRL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+L D+ NLSTEEAVQL++RWLR+MAQPFTRED LG++LL+L QL E + E
Sbjct: 694 PKWIQEHLVDSFCNLSTEEAVQLARRWLRRMAQPFTREDQLGISLLTLAQLENMEQEKLE 753
Query: 936 EE 937
+
Sbjct: 754 RQ 755
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D +VIRNYGQLLV++A VPDG+VCFFTSYLYLES
Sbjct: 489 CLLP-MIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLES 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQD 649
VVASWYDQGI+D L + KLLFIETQD
Sbjct: 548 VVASWYDQGIVDTLLRYKLLFIETQD 573
>gi|38455518|gb|AAR20858.1| xeroderma pigmentosum D [Drosophila melanogaster]
Length = 685
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 252/418 (60%), Positives = 312/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER+GK VDG+C+ LT+S +R+RH+ P+C ++E F G+E+ L GVYSI L
Sbjct: 37 VSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDL 96
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 97 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 156
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA R+
Sbjct: 157 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 216
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD++LANPVLP+++L EVVPGNIR A+HF+ FL+RFIEY+KTRLRV VVQESPA FLKD
Sbjct: 217 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 276
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
IS SK+CIERKPLRFCA
Sbjct: 277 IS--------------------------------------------SKICIERKPLRFCA 292
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SLLRTLEI++LT++ +L +ITH ATLVS+YTKGF II+EPF DK PTV NP+L+F
Sbjct: 293 ERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHFS 352
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+ PVF RFQTVVITSGTLSP+DMYPKIL+F PV+M SF+MTLARPCLLPM+
Sbjct: 353 CLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMI 410
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 114/195 (58%), Positives = 151/195 (77%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKER+GK VDG+C+ LT+S +R+RH+ P+C ++E F G+E+ L GVYSI L
Sbjct: 37 VSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDL 96
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 97 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 156
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA R+
Sbjct: 157 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 216
Query: 836 TDVVLANPVLPDEIL 850
TD++LANPVLP+++L
Sbjct: 217 TDMILANPVLPNDVL 231
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/122 (56%), Positives = 85/122 (69%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + L+GKTDYGIMIFADKRF+R DKRS+L
Sbjct: 551 ARL-DYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRHDKRSRL 609
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+ D+ NLSTEEAVQL++RWLR+MAQP TRED LG+ LL+L QL E + E
Sbjct: 610 PKWIQEHXVDSFCNLSTEEAVQLARRWLRRMAQPXTREDQLGIXLLTLAQLENMEQEKLE 669
Query: 936 EE 937
+
Sbjct: 670 RQ 671
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D +VIRNYGQLLV++A VPDG+VCFFTSYLYLES
Sbjct: 405 CLLP-MIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLES 463
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQD 649
VVASWYDQGI+D L + KLLFIET D
Sbjct: 464 VVASWYDQGIVDTLLRYKLLFIETXD 489
>gi|17137232|ref|NP_477178.1| xeroderma pigmentosum D, isoform B [Drosophila melanogaster]
gi|281363902|ref|NP_001163231.1| xeroderma pigmentosum D, isoform C [Drosophila melanogaster]
gi|4928442|gb|AAD33587.1|AF132140_1 excision repair protein ERCC2/XPD [Drosophila melanogaster]
gi|7291258|gb|AAF46689.1| xeroderma pigmentosum D, isoform B [Drosophila melanogaster]
gi|220945966|gb|ACL85526.1| Xpd-PB [synthetic construct]
gi|272432602|gb|ACZ94503.1| xeroderma pigmentosum D, isoform C [Drosophila melanogaster]
Length = 745
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 252/418 (60%), Positives = 312/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER+GK VDG+C+ LT+S +R+RH+ P+C ++E F G+E+ L GVYSI L
Sbjct: 97 VSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDL 156
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 157 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 216
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA R+
Sbjct: 217 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 276
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD++LANPVLP+++L EVVPGNIR A+HF+ FL+RFIEY+KTRLRV VVQESPA FLKD
Sbjct: 277 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 336
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
IS SK+CIERKPLRFCA
Sbjct: 337 IS--------------------------------------------SKICIERKPLRFCA 352
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SLLRTLEI++LT++ +L +ITH ATLVS+YTKGF II+EPF DK PTV NP+L+F
Sbjct: 353 ERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHFS 412
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+ PVF RFQTVVITSGTLSP+DMYPKIL+F PV+M SF+MTLARPCLLPM+
Sbjct: 413 CLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMI 470
Score = 253 bits (645), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 114/195 (58%), Positives = 151/195 (77%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKER+GK VDG+C+ LT+S +R+RH+ P+C ++E F G+E+ L GVYSI L
Sbjct: 97 VSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDL 156
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 157 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 216
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA R+
Sbjct: 217 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 276
Query: 836 TDVVLANPVLPDEIL 850
TD++LANPVLP+++L
Sbjct: 277 TDMILANPVLPNDVL 291
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 88/122 (72%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + L+GKTDYGIMIFADKRF+R DKRS+L
Sbjct: 611 ARL-DYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRHDKRSRL 669
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+L D+ NLSTEEAVQL++RWLR+MAQPFTRED LG++LL+L QL E + E
Sbjct: 670 PKWIQEHLVDSFCNLSTEEAVQLARRWLRRMAQPFTREDQLGISLLTLAQLENMEQEKLE 729
Query: 936 EE 937
+
Sbjct: 730 RQ 731
Score = 135 bits (341), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/96 (70%), Positives = 76/96 (79%), Gaps = 1/96 (1%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M+ELK++LDAKGHCLLEMPSGTGKT +LLSLIVAYM HP V KL+YCSRTVPEIEKV+
Sbjct: 1 MLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYMVEHPETVRKLIYCSRTVPEIEKVI 60
Query: 508 EELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
EL L YY +H TGLVLSSRKN+CIH E
Sbjct: 61 AELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPE 96
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D +VIRNYGQLLV++A VPDG+VCFFTSYLYLES
Sbjct: 465 CLLP-MIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLES 523
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQD 649
VVASWYDQGI+D L + KLLFIETQD
Sbjct: 524 VVASWYDQGIVDTLLRYKLLFIETQD 549
>gi|45551134|ref|NP_726036.2| xeroderma pigmentosum D, isoform A [Drosophila melanogaster]
gi|45445340|gb|AAM70857.2| xeroderma pigmentosum D, isoform A [Drosophila melanogaster]
Length = 769
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 252/418 (60%), Positives = 312/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER+GK VDG+C+ LT+S +R+RH+ P+C ++E F G+E+ L GVYSI L
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA R+
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD++LANPVLP+++L EVVPGNIR A+HF+ FL+RFIEY+KTRLRV VVQESPA FLKD
Sbjct: 301 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
IS SK+CIERKPLRFCA
Sbjct: 361 IS--------------------------------------------SKICIERKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SLLRTLEI++LT++ +L +ITH ATLVS+YTKGF II+EPF DK PTV NP+L+F
Sbjct: 377 ERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+ PVF RFQTVVITSGTLSP+DMYPKIL+F PV+M SF+MTLARPCLLPM+
Sbjct: 437 CLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMI 494
Score = 253 bits (645), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 114/195 (58%), Positives = 151/195 (77%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKER+GK VDG+C+ LT+S +R+RH+ P+C ++E F G+E+ L GVYSI L
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA R+
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 300
Query: 836 TDVVLANPVLPDEIL 850
TD++LANPVLP+++L
Sbjct: 301 TDMILANPVLPNDVL 315
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/120 (71%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPYEYIYPEQYAYM+ELK++LDAKGHCLLEMPSGTGKT +LLSLIVAYM
Sbjct: 1 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
HP V KL+YCSRTVPEIEKV+ EL L YY +H TGLVLSSRKN+CIH E
Sbjct: 61 VEHPETVRKLIYCSRTVPEIEKVIAELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPE 120
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 88/122 (72%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + L+GKTDYGIMIFADKRF+R DKRS+L
Sbjct: 635 ARL-DYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRHDKRSRL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+L D+ NLSTEEAVQL++RWLR+MAQPFTRED LG++LL+L QL E + E
Sbjct: 694 PKWIQEHLVDSFCNLSTEEAVQLARRWLRRMAQPFTREDQLGISLLTLAQLENMEQEKLE 753
Query: 936 EE 937
+
Sbjct: 754 RQ 755
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D +VIRNYGQLLV++A VPDG+VCFFTSYLYLES
Sbjct: 489 CLLP-MIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLES 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQD 649
VVASWYDQGI+D L + KLLFIETQD
Sbjct: 548 VVASWYDQGIVDTLLRYKLLFIETQD 573
>gi|38455500|gb|AAR20847.1| xeroderma pigmentosum D [Drosophila melanogaster]
gi|38455503|gb|AAR20849.1| xeroderma pigmentosum D [Drosophila melanogaster]
gi|38455507|gb|AAR20851.1| xeroderma pigmentosum D [Drosophila melanogaster]
gi|38455515|gb|AAR20856.1| xeroderma pigmentosum D [Drosophila melanogaster]
gi|38455523|gb|AAR20861.1| xeroderma pigmentosum D [Drosophila melanogaster]
Length = 685
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 252/418 (60%), Positives = 312/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER+GK VDG+C+ LT+S +R+RH+ P+C ++E F G+E+ L GVYSI L
Sbjct: 37 VSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDL 96
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 97 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 156
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA R+
Sbjct: 157 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 216
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD++LANPVLP+++L EVVPGNIR A+HF+ FL+RFIEY+KTRLRV VVQESPA FLKD
Sbjct: 217 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 276
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
IS SK+CIERKPLRFCA
Sbjct: 277 IS--------------------------------------------SKICIERKPLRFCA 292
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SLLRTLEI++LT++ +L +ITH ATLVS+YTKGF II+EPF DK PTV NP+L+F
Sbjct: 293 ERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHFS 352
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+ PVF RFQTVVITSGTLSP+DMYPKIL+F PV+M SF+MTLARPCLLPM+
Sbjct: 353 CLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMI 410
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 114/195 (58%), Positives = 151/195 (77%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKER+GK VDG+C+ LT+S +R+RH+ P+C ++E F G+E+ L GVYSI L
Sbjct: 37 VSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDL 96
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 97 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 156
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA R+
Sbjct: 157 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 216
Query: 836 TDVVLANPVLPDEIL 850
TD++LANPVLP+++L
Sbjct: 217 TDMILANPVLPNDVL 231
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 88/122 (72%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + L+GKTDYGIMIFADKRF+R DKRS+L
Sbjct: 551 ARL-DYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRHDKRSRL 609
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+L D+ NLSTEEAVQL++RWLR+MAQPFTRED LG++LL+L QL E + E
Sbjct: 610 PKWIQEHLVDSFCNLSTEEAVQLARRWLRRMAQPFTREDQLGISLLTLAQLENMEQEKLE 669
Query: 936 EE 937
+
Sbjct: 670 RQ 671
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D +VIRNYGQLLV++A VPDG+VCFFTSYLYLES
Sbjct: 405 CLLP-MIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLES 463
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQD 649
VVASWYDQGI+D L + KLLFIETQD
Sbjct: 464 VVASWYDQGIVDTLLRYKLLFIETQD 489
>gi|347969002|ref|XP_311900.4| AGAP002988-PA [Anopheles gambiae str. PEST]
gi|333467742|gb|EAA08105.4| AGAP002988-PA [Anopheles gambiae str. PEST]
Length = 760
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 261/418 (62%), Positives = 313/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS+ER+GKIVD RC+ +T+S VR+R E+ PVC +YE F A G+E L PGVYSI L
Sbjct: 121 VSREREGKIVDARCYGMTASYVRERAAHDESAPVCQYYEGFQAEGKENMLPPGVYSIDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GRE CPYFL+R AI A +VVYSY+YLLDPK+A VVSKELAR SVVV DEAHNID
Sbjct: 181 KEFGRERNWCPYFLSRFAINQAHVVVYSYYYLLDPKVAEVVSKELARESVVVCDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVCVDS+SV+INRR IE++ I LE + E+KE D +L EEY RLV+GL+DA ARE
Sbjct: 241 NVCVDSMSVKINRRLIERSTTGIHNLEKKVAELKEDDKRRLNEEYVRLVQGLKDASFARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD+VLANPVLP+E+++EVVPGNIR A+HF+ FLKRFIEY+K+RLRVQ VVQESPA FL+D
Sbjct: 301 TDMVLANPVLPNEVIREVVPGNIRNADHFLSFLKRFIEYIKSRLRVQHVVQESPAGFLRD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
VQQ KVCIERKPLRFCA
Sbjct: 361 -----------------------------VQQ---------------KVCIERKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
+RL SLLRTLEIT+L+++ L VIT ATLVS+YTKGF II+EPF DK PTV NP+++F
Sbjct: 377 DRLQSLLRTLEITDLSEYGPLSVITSFATLVSTYTKGFTIIIEPFDDKTPTVSNPIMHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+KP+F RFQ+VVITSGTLSP+DMYPKIL+F+PV+M SF+MTLARPCLLPM+
Sbjct: 437 CLDSSIAMKPIFQRFQSVVITSGTLSPMDMYPKILDFEPVVMSSFTMTLARPCLLPMI 494
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 125/196 (63%), Positives = 152/196 (77%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS+ER+GKIVD RC+ +T+S VR+R E+ PVC +YE F A G+E L PGVYSI L
Sbjct: 121 VSREREGKIVDARCYGMTASYVRERAAHDESAPVCQYYEGFQAEGKENMLPPGVYSIDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE GRE CPYFL+R AI A +VVYSY+YLLDPK+A VVSKELAR SVVV DEAHNID
Sbjct: 181 KEFGRERNWCPYFLSRFAINQAHVVVYSYYYLLDPKVAEVVSKELARESVVVCDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVCVDS+SV+INRR IE++ I LE + E+KE D +L EEY RLV+GL+DA ARE
Sbjct: 241 NVCVDSMSVKINRRLIERSTTGIHNLEKKVAELKEDDKRRLNEEYVRLVQGLKDASFARE 300
Query: 836 TDVVLANPVLPDEILQ 851
TD+VLANPVLP+E+++
Sbjct: 301 TDMVLANPVLPNEVIR 316
Score = 176 bits (445), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 87/136 (63%), Positives = 104/136 (76%), Gaps = 3/136 (2%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + +D L V+FPYEYIYPEQYAYM+ELK+ DAKGHCLLEMPSGTGKTT+LLSLIVAY+
Sbjct: 1 MRISVDGLLVYFPYEYIYPEQYAYMLELKRTFDAKGHCLLEMPSGTGKTTTLLSLIVAYI 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSE 542
+P V KL+YCSRTVPEIEKV+ EL L +YY K + N+TGLVLSSRKN+CIH E
Sbjct: 61 LENPHVVRKLIYCSRTVPEIEKVIAELKHLMNYYEKQTGAMPNITGLVLSSRKNMCIHPE 120
Query: 543 FETRDDISVI--RNYG 556
+ ++ R YG
Sbjct: 121 VSREREGKIVDARCYG 136
Score = 147 bits (371), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/122 (60%), Positives = 92/122 (75%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + ++GKTDYGIMIFADKRF+R DKR KL
Sbjct: 635 ARL-DYLRDQFQIRENDFLTFDALRHAAQCVGRAIRGKTDYGIMIFADKRFSRQDKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+LTDNL+NLSTEE++QL+KRWLRQMAQPFTRED LGV+LL+L+QL E + E
Sbjct: 694 PKWIQEHLTDNLSNLSTEESMQLAKRWLRQMAQPFTREDQLGVSLLTLEQLQSMEREKLE 753
Query: 936 EE 937
++
Sbjct: 754 KQ 755
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 69/90 (76%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D +V RNYGQLLV+ A VPDGVVCFFTSYLYLES
Sbjct: 489 CLLP-MIVARGNDQVAISSRFETREDTAVTRNYGQLLVETAKTVPDGVVCFFTSYLYLES 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
VVASWYDQGIID L + KLLFIETQD ++
Sbjct: 548 VVASWYDQGIIDTLLRYKLLFIETQDNAET 577
>gi|38455521|gb|AAR20860.1| xeroderma pigmentosum D [Drosophila melanogaster]
Length = 685
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 252/418 (60%), Positives = 312/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER+GK VDG+C+ LT+S +R+RH+ P+C ++E F G+E+ L GVYSI L
Sbjct: 37 VSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDL 96
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 97 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 156
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA R+
Sbjct: 157 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 216
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD++LANPVLP+++L EVVPGNIR A+HF+ FL+RFIEY+KTRLRV VVQESPA FLKD
Sbjct: 217 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 276
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
IS SK+CIERKPLRFCA
Sbjct: 277 IS--------------------------------------------SKICIERKPLRFCA 292
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SLLRTLEI++LT++ +L +ITH ATLVS+YTKGF II+EPF DK PTV NP+L+F
Sbjct: 293 ERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHFS 352
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+ PVF RFQTVVITSGTLSP+DMYPKIL+F PV+M SF+MTLARPCLLPM+
Sbjct: 353 CLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMI 410
Score = 252 bits (644), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 114/195 (58%), Positives = 151/195 (77%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKER+GK VDG+C+ LT+S +R+RH+ P+C ++E F G+E+ L GVYSI L
Sbjct: 37 VSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDL 96
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 97 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 156
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA R+
Sbjct: 157 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 216
Query: 836 TDVVLANPVLPDEIL 850
TD++LANPVLP+++L
Sbjct: 217 TDMILANPVLPNDVL 231
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 88/122 (72%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + L+GKTDYGIMIFADKRF+R DKRS+L
Sbjct: 551 ARL-DYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRHDKRSRL 609
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+L D+ NLSTEEAVQL++RWLR+MAQPFTRED LG++LL+L QL E + E
Sbjct: 610 PKWIQEHLVDSFCNLSTEEAVQLARRWLRRMAQPFTREDQLGISLLTLAQLENMEQEKLE 669
Query: 936 EE 937
+
Sbjct: 670 RQ 671
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D +VIRNYGQLLV++A VPDG+VCFFTSYLYLES
Sbjct: 405 CLLP-MIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLES 463
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQD 649
VVASWYDQGI+D L + KLLFIETQD
Sbjct: 464 VVASWYDQGIVDTLLRYKLLFIETQD 489
>gi|195486599|ref|XP_002091573.1| GE12176 [Drosophila yakuba]
gi|194177674|gb|EDW91285.1| GE12176 [Drosophila yakuba]
Length = 769
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 251/418 (60%), Positives = 312/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER+GK VDG+C+ LT+S +R+RH+ P+C ++E F G+E+ L GVYSI L
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRERHEMDAETPICQYFEGFSMEGKESTLPVGVYSIDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 181 KEYGRARNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA R+
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNQLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD++LANPVLP+++L EVVPGNIR A+HF+ FL+RFIEY+KTRLRV VVQESPA FLKD
Sbjct: 301 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
IS +K+CIERKPLRFCA
Sbjct: 361 IS--------------------------------------------TKICIERKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SLLRTLEI++LT++ +L +ITH ATLVS+YTKGF II+EPF DK PTV NP+L+F
Sbjct: 377 ERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+ PVF RFQTVVITSGTLSP+DMYPKIL+F PV+M SF+MTLARPCLLPM+
Sbjct: 437 CLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMI 494
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 114/195 (58%), Positives = 151/195 (77%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKER+GK VDG+C+ LT+S +R+RH+ P+C ++E F G+E+ L GVYSI L
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRERHEMDAETPICQYFEGFSMEGKESTLPVGVYSIDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 181 KEYGRARNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA R+
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNQLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 300
Query: 836 TDVVLANPVLPDEIL 850
TD++LANPVLP+++L
Sbjct: 301 TDMILANPVLPNDVL 315
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 85/120 (70%), Positives = 97/120 (80%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPYEYIYPEQYAYM+ELK++LDAKGHCLLEMPSGTGKT +LLSLIVAYM
Sbjct: 1 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
HP V KL+YCSRTVPEIEKV+ EL L YY ++ +TGLVLSSRKN+CIH E
Sbjct: 61 VEHPETVRKLIYCSRTVPEIEKVIAELQNLMVYYERNCPNPPPLTGLVLSSRKNMCIHPE 120
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 88/122 (72%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + L+GKTDYGIMIFADKRF+R DKRS+L
Sbjct: 635 ARL-DYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRHDKRSRL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+L D+ NLSTEEAVQL++RWLR+MAQPFTRED LG++LL+L QL E + E
Sbjct: 694 PKWIQEHLVDSFCNLSTEEAVQLARRWLRRMAQPFTREDQLGISLLTLAQLENMEQEKLE 753
Query: 936 EE 937
+
Sbjct: 754 RQ 755
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D +VIRNYGQLLV++A VPDG+VCFFTSYLYLES
Sbjct: 489 CLLP-MIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLES 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQD 649
VVASWYDQGI+D L + KLLFIETQD
Sbjct: 548 VVASWYDQGIVDTLLRYKLLFIETQD 573
>gi|281183417|gb|ADA53577.1| RH28463p [Drosophila melanogaster]
Length = 781
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 252/418 (60%), Positives = 312/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER+GK VDG+C+ LT+S +R+RH+ P+C ++E F G+E+ L GVYSI L
Sbjct: 133 VSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDL 192
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 193 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 252
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA R+
Sbjct: 253 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 312
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD++LANPVLP+++L EVVPGNIR A+HF+ FL+RFIEY+KTRLRV VVQESPA FLKD
Sbjct: 313 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 372
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
IS SK+CIERKPLRFCA
Sbjct: 373 IS--------------------------------------------SKICIERKPLRFCA 388
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SLLRTLEI++LT++ +L +ITH ATLVS+YTKGF II+EPF DK PTV NP+L+F
Sbjct: 389 ERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHFS 448
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+ PVF RFQTVVITSGTLSP+DMYPKIL+F PV+M SF+MTLARPCLLPM+
Sbjct: 449 CLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMI 506
Score = 252 bits (644), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 114/195 (58%), Positives = 151/195 (77%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKER+GK VDG+C+ LT+S +R+RH+ P+C ++E F G+E+ L GVYSI L
Sbjct: 133 VSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDL 192
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 193 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 252
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA R+
Sbjct: 253 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 312
Query: 836 TDVVLANPVLPDEIL 850
TD++LANPVLP+++L
Sbjct: 313 TDMILANPVLPNDVL 327
Score = 176 bits (445), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 98/127 (77%), Gaps = 1/127 (0%)
Query: 417 MVRENYAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLL 476
+ R M L +D L V+FPYEYIYPEQYAYM+ELK++LDAKGHCLLEMPSGTGKT +LL
Sbjct: 6 LSRNRRIMKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLL 65
Query: 477 SLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRK 535
SLIVAYM HP V KL+YCSRTVPEIEKV+ EL L YY +H TGLVLSSRK
Sbjct: 66 SLIVAYMVEHPETVRKLIYCSRTVPEIEKVIAELQNLMVYYERHCPNPPPFTGLVLSSRK 125
Query: 536 NLCIHSE 542
N+CIH E
Sbjct: 126 NMCIHPE 132
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 88/122 (72%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + L+GKTDYGIMIFADKRF+R DKRS+L
Sbjct: 647 ARL-DYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRHDKRSRL 705
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+L D+ NLSTEEAVQL++RWLR+MAQPFTRED LG++LL+L QL E + E
Sbjct: 706 PKWIQEHLVDSFCNLSTEEAVQLARRWLRRMAQPFTREDQLGISLLTLAQLENMEQEKLE 765
Query: 936 EE 937
+
Sbjct: 766 RQ 767
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 71/90 (78%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D +VIRNYGQLLV++A VPDG+VCFFTSYLYLES
Sbjct: 501 CLLP-MIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLES 559
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
VVASWYDQGI+D L + KLLFIETQD ++
Sbjct: 560 VVASWYDQGIVDTLLRYKLLFIETQDNAET 589
>gi|195170160|ref|XP_002025881.1| GL10160 [Drosophila persimilis]
gi|198461162|ref|XP_002138963.1| GA25100 [Drosophila pseudoobscura pseudoobscura]
gi|194110745|gb|EDW32788.1| GL10160 [Drosophila persimilis]
gi|198137256|gb|EDY69521.1| GA25100 [Drosophila pseudoobscura pseudoobscura]
Length = 769
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/418 (59%), Positives = 313/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER+GK VDG+C+ LT+S +RD+H+ + P+C ++E F G+E+ L G+YS+ L
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRDKHELDTDTPICQYFEGFSLEGKESTLPIGIYSLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GR CPYFLAR AI HA+IVVYSYHYLLDPKIA VVSKE+ R S VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFLARYAISHAQIVVYSYHYLLDPKIAQVVSKEMTRESCVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA RE
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNQLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD+++ANPVLP+++L EVVPGNIR A+HF+ FL+RFIE++KTRLRV VVQESPA FLKD
Sbjct: 301 TDMIMANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEFIKTRLRVHHVVQESPAGFLKD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
IS +K+CIERKPLRFCA
Sbjct: 361 IS--------------------------------------------AKICIERKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SLLRTLEIT++T++ +L +ITH ATLVS+YTKGF II+EPF DK PTV NP+L+F
Sbjct: 377 ERLSSLLRTLEITDMTEYGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+ PVF RFQTVVITSGTLSP+DMYPKIL+F PV+M SF+MTLARPCLLPM+
Sbjct: 437 CLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMI 494
Score = 253 bits (646), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 112/195 (57%), Positives = 152/195 (77%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKER+GK VDG+C+ LT+S +RD+H+ + P+C ++E F G+E+ L G+YS+ L
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRDKHELDTDTPICQYFEGFSLEGKESTLPIGIYSLDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE GR CPYFLAR AI HA+IVVYSYHYLLDPKIA VVSKE+ R S VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFLARYAISHAQIVVYSYHYLLDPKIAQVVSKEMTRESCVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA RE
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNQLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRE 300
Query: 836 TDVVLANPVLPDEIL 850
TD+++ANPVLP+++L
Sbjct: 301 TDMIMANPVLPNDVL 315
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/120 (71%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + ID L V+FPYEYIYPEQYAYM+ELK+ LDAKGHCLLEMPSGTGKT +LLSLIVAYM
Sbjct: 1 MKISIDGLLVYFPYEYIYPEQYAYMLELKRTLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN-EEINMTGLVLSSRKNLCIHSE 542
HP + KL+YCSRTVPEIEKV+ EL L YY + + MTGLVLSSRKNLCIH E
Sbjct: 61 IEHPETIRKLIYCSRTVPEIEKVIAELQNLMVYYERECVKPPAMTGLVLSSRKNLCIHPE 120
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 70/122 (57%), Positives = 88/122 (72%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + L+GKTDYGIMIFADKRF+R DKRS+L
Sbjct: 635 ARL-DYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRQDKRSRL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+L D+ NLSTEEAVQL++RWLR+MAQPF+RED LG++LL+L QL E + E
Sbjct: 694 PKWIQEHLVDSFCNLSTEEAVQLARRWLRRMAQPFSREDQLGISLLTLAQLENMEQEKLE 753
Query: 936 EE 937
+
Sbjct: 754 RQ 755
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D +VIRNYGQLLV++A VPDGVVCFFTSYLYLES
Sbjct: 489 CLLP-MIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGVVCFFTSYLYLES 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQD 649
VVASWYDQGI+D L + KLLFIETQD
Sbjct: 548 VVASWYDQGIVDTLLRYKLLFIETQD 573
>gi|312370938|gb|EFR19235.1| hypothetical protein AND_22844 [Anopheles darlingi]
Length = 807
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 258/418 (61%), Positives = 311/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS+ER+GKIVD RC+ +T+S VR+R E PVC +YE F A G+E+ L PGVYSI L
Sbjct: 119 VSREREGKIVDARCYGMTASYVRERAAHDETAPVCQYYEGFQAEGKESMLPPGVYSIDDL 178
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GRE CPYFL+R AI A +VVYSY+YLLDPK+A VVSKEL R SVVV DEAHNID
Sbjct: 179 KEFGRERNWCPYFLSRFAINQAHVVVYSYYYLLDPKVAEVVSKELTRESVVVCDEAHNID 238
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVCVDS+SV+IN+R IE++ I LE + E+KE D +L +EY RLV+GL+DA ARE
Sbjct: 239 NVCVDSMSVKINKRLIERSTTGIHNLEQKISELKEDDKRRLNDEYTRLVQGLKDASFARE 298
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD+V+ANPVLP+EIL+EVVPGNIR A+HF+ FLKRFIEY+K+RLRVQ VVQESPA FL+
Sbjct: 299 TDMVVANPVLPNEILREVVPGNIRNADHFLSFLKRFIEYIKSRLRVQHVVQESPAGFLR- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
D+ +VCIERKPLRFCA
Sbjct: 358 -------------------------------------------DVQRQVCIERKPLRFCA 374
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
+RL SLLRTLEIT+L+++ L VIT ATLVS+YTKGF II+EPF DK PTVPNP+L+F
Sbjct: 375 DRLQSLLRTLEITDLSEYGPLSVITSFATLVSTYTKGFTIIIEPFDDKTPTVPNPILHFS 434
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+KP+F RFQ+VVITSGTLSP+DMYPKIL+F+PV+M SF+MTLARPCLLPMV
Sbjct: 435 CLDSSIAMKPIFQRFQSVVITSGTLSPMDMYPKILDFEPVVMSSFTMTLARPCLLPMV 492
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/196 (62%), Positives = 151/196 (77%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS+ER+GKIVD RC+ +T+S VR+R E PVC +YE F A G+E+ L PGVYSI L
Sbjct: 119 VSREREGKIVDARCYGMTASYVRERAAHDETAPVCQYYEGFQAEGKESMLPPGVYSIDDL 178
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE GRE CPYFL+R AI A +VVYSY+YLLDPK+A VVSKEL R SVVV DEAHNID
Sbjct: 179 KEFGRERNWCPYFLSRFAINQAHVVVYSYYYLLDPKVAEVVSKELTRESVVVCDEAHNID 238
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVCVDS+SV+IN+R IE++ I LE + E+KE D +L +EY RLV+GL+DA ARE
Sbjct: 239 NVCVDSMSVKINKRLIERSTTGIHNLEQKISELKEDDKRRLNDEYTRLVQGLKDASFARE 298
Query: 836 TDVVLANPVLPDEILQ 851
TD+V+ANPVLP+EIL+
Sbjct: 299 TDMVVANPVLPNEILR 314
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 87/134 (64%), Positives = 101/134 (75%), Gaps = 3/134 (2%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
+ +D L V+FPYEYIYPEQYAYM+ELK+ DAKGHCLLEMPSGTGKTT+LLSL VAY+
Sbjct: 1 MSVDGLLVYFPYEYIYPEQYAYMLELKRTFDAKGHCLLEMPSGTGKTTTLLSLTVAYILE 60
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSEF- 543
+P V KL+YCSRTVPEIEKV+ EL L +YY K + N+TGLVLSSRKN+CIH E
Sbjct: 61 NPHIVRKLIYCSRTVPEIEKVIAELKHLMNYYEKQTGTMPNITGLVLSSRKNMCIHPEVS 120
Query: 544 -ETRDDISVIRNYG 556
E I R YG
Sbjct: 121 REREGKIVDARCYG 134
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/147 (50%), Positives = 92/147 (62%), Gaps = 31/147 (21%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + ++GKTDYGIMIFADKRF+R DKR KL
Sbjct: 657 ARL-DYLRDQFQIRENDFLTFDALRHAAQCVGRAIRGKTDYGIMIFADKRFSRQDKRGKL 715
Query: 876 PKWIQEYLTDNLTNLSTEEA-------------------------VQLSKRWLRQMAQPF 910
PKWIQE+LTDNL+NLSTEE+ +QL+KRWLRQMAQPF
Sbjct: 716 PKWIQEHLTDNLSNLSTEESMQVGSMHRSLATSPHGFNIPICFVVLQLAKRWLRQMAQPF 775
Query: 911 TREDMLGVALLSLDQLLEKEHARAEEE 937
TRED LGV+LL+L+QL E + E++
Sbjct: 776 TREDQLGVSLLTLEQLQSMEREKLEKQ 802
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Query: 555 YGQLLVDIACVV-PDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVC 613
Y L++ I C+ P +V + + S FETR+D +V RNYGQLLV+ A VPDG+VC
Sbjct: 500 YSVLVLTINCICSPHQIVARGNDQVAISSRFETREDTAVTRNYGQLLVETAKTVPDGIVC 559
Query: 614 FFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
FFTSYLYLESVVASWYDQGIID L + KLLFIETQD ++
Sbjct: 560 FFTSYLYLESVVASWYDQGIIDTLLRYKLLFIETQDNAET 599
>gi|195346339|ref|XP_002039723.1| GM15813 [Drosophila sechellia]
gi|194135072|gb|EDW56588.1| GM15813 [Drosophila sechellia]
Length = 769
Score = 530 bits (1366), Expect = e-147, Method: Compositional matrix adjust.
Identities = 252/418 (60%), Positives = 309/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER+GK VDG+C+ LT+S +R+RH P+C ++E F G+E+ L GVYSI L
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRERHDMDAETPICQYFEGFSLEGKESTLPVGVYSIDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA R+
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD++LANPVLP+++L EVVPGNIR A+HF+ FL+RFIEY+KTRLRV VVQESPA FLKD
Sbjct: 301 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
IS SK+CIERKPLRFCA
Sbjct: 361 IS--------------------------------------------SKICIERKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SLLRTLEI +LT+F +L +ITH ATLVS+YTKGF II+EPF DK PTV NP+L+F
Sbjct: 377 ERLSSLLRTLEINDLTEFGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+ PVF RFQTVVITSGTLSP+DMYPKIL+F PV+M SF+MTL RPCLLPM+
Sbjct: 437 CLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLTRPCLLPMI 494
Score = 252 bits (644), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 114/195 (58%), Positives = 150/195 (76%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKER+GK VDG+C+ LT+S +R+RH P+C ++E F G+E+ L GVYSI L
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRERHDMDAETPICQYFEGFSLEGKESTLPVGVYSIDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA R+
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 300
Query: 836 TDVVLANPVLPDEIL 850
TD++LANPVLP+++L
Sbjct: 301 TDMILANPVLPNDVL 315
Score = 175 bits (444), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 86/120 (71%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPYEYIYPEQYAYM+ELK++LDAKGHCLLEMPSGTGKT +LLSLIVAYM
Sbjct: 1 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
HP V KL+YCSRTVPEIEKV+ EL L YY +H TGLVLSSRKN+CIH E
Sbjct: 61 VEHPETVRKLIYCSRTVPEIEKVIAELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPE 120
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 88/122 (72%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + L+GKTDYGIMIFADKRF+R DKRS+L
Sbjct: 635 ARL-DYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRHDKRSRL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+L D+ NLSTEEAVQL++RWLR+MAQPFTRED LG++LL+L QL E + E
Sbjct: 694 PKWIQEHLVDSFCNLSTEEAVQLARRWLRRMAQPFTREDQLGISLLTLAQLENMEQEKLE 753
Query: 936 EE 937
+
Sbjct: 754 RQ 755
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D +VIRNYGQLLV++A VPDG+VCFFTSYLYLES
Sbjct: 489 CLLP-MIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLES 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQD 649
VVASWYDQGI+D L + KLLFIETQD
Sbjct: 548 VVASWYDQGIVDTLLRYKLLFIETQD 573
>gi|195025610|ref|XP_001986090.1| GH20727 [Drosophila grimshawi]
gi|193902090|gb|EDW00957.1| GH20727 [Drosophila grimshawi]
Length = 769
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/418 (59%), Positives = 310/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER+GK VDG+C+ LT+S +R+RH+ +P+C ++E F G+E+ L G+YSI L
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRERHEMDAEVPICQYFEGFTLEGKESTLPVGIYSIDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GR CPYF AR AI HA IVVYSYHYLLDPKIA VVSKE+ R S VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFTARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMTRESCVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INRRT+E++ + L +++M++ D+ +L EEY R+V+GL+DA R+
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNNLTKLVQDMRDEDTNRLNEEYQRMVQGLKDASVQRD 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD++LANPVLP ++L EVVPGNIR A+HF+ FL+RFIEY+KTRLRV VVQESPA FLKD
Sbjct: 301 TDMILANPVLPKDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+S SK+CIERKPLRFCA
Sbjct: 361 VS--------------------------------------------SKICIERKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SLLRTLEI+++T+F +L +ITH ATLVS+YTKGF II+EPF DK PTV NP+++F
Sbjct: 377 ERLSSLLRTLEISDMTEFGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPIMHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+ PVF RFQTVVITSGTLSP+DMYPKIL+F PV+M SF+MTLARPCLLPM+
Sbjct: 437 CLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMI 494
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 112/195 (57%), Positives = 149/195 (76%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKER+GK VDG+C+ LT+S +R+RH+ +P+C ++E F G+E+ L G+YSI L
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRERHEMDAEVPICQYFEGFTLEGKESTLPVGIYSIDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE GR CPYF AR AI HA IVVYSYHYLLDPKIA VVSKE+ R S VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFTARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMTRESCVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INRRT+E++ + L +++M++ D+ +L EEY R+V+GL+DA R+
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNNLTKLVQDMRDEDTNRLNEEYQRMVQGLKDASVQRD 300
Query: 836 TDVVLANPVLPDEIL 850
TD++LANPVLP ++L
Sbjct: 301 TDMILANPVLPKDVL 315
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/120 (72%), Positives = 98/120 (81%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPYEYIYPEQYAYM+ELK++LDAKGHCLLEMPSGTGKT +LLSLIVAYM
Sbjct: 1 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
HP + KL+YCSRTVPEIEKV+ EL L YY KH + MTGLVLSSRKN+CIH E
Sbjct: 61 IEHPERIRKLIYCSRTVPEIEKVIAELQNLMVYYDKHAHTPPGMTGLVLSSRKNMCIHPE 120
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/122 (56%), Positives = 87/122 (71%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + L+GKTDYGIMIFADKRF+R DKRS+L
Sbjct: 635 ARL-DYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRQDKRSRL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+L D+ NLSTEEAVQL++RWLR+MAQPF+RE LG++LL+L QL E + E
Sbjct: 694 PKWIQEHLVDSFCNLSTEEAVQLARRWLRRMAQPFSREVQLGISLLTLAQLEGMEQEKLE 753
Query: 936 EE 937
+
Sbjct: 754 RQ 755
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D +VIRNYGQLLV++A VPDG+VCFFTSYLYLES
Sbjct: 489 CLLP-MIVSKGNDQVSISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLES 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQD 649
VVASWYDQGI+D L + KLLFIETQD
Sbjct: 548 VVASWYDQGIVDTLLRYKLLFIETQD 573
>gi|357624408|gb|EHJ75192.1| hypothetical protein KGM_19783 [Danaus plexippus]
Length = 736
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 250/418 (59%), Positives = 315/418 (75%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS+ER+GK+VDG+CHSLT+S +RDRH+ ++P+C FYE F+ GRE+ L GVY++ L
Sbjct: 97 VSREREGKLVDGKCHSLTASYIRDRHEQDPSVPICQFYEGFNREGRESMLPYGVYTMDDL 156
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K+ G + CPYFL+R AIIHA+IVVYSYHYLLDPKIA VVSKEL + +VVVFDEAHNID
Sbjct: 157 KQYGADRNWCPYFLSRFAIIHAEIVVYSYHYLLDPKIAEVVSKELNKEAVVVFDEAHNID 216
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DSLSV+I RRTI+K+ +QTLE + ++K+ D A+L EY ++VEGLR+A R+
Sbjct: 217 NVCIDSLSVKITRRTIDKSTQALQTLEKAVSQLKQEDEARLALEYEQMVEGLREAAQLRD 276
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+DV+L NPVLPDE+L EVVPGNIR A HF+GFLKRFIEYLKTRLR+Q VVQESPA FLKD
Sbjct: 277 SDVILGNPVLPDELLNEVVPGNIRNAVHFLGFLKRFIEYLKTRLRIQHVVQESPAGFLKD 336
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+S S+VCIERKPLRF +
Sbjct: 337 VS--------------------------------------------SRVCIERKPLRFVS 352
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
RL +L++TL+I + ++F SL ++ HLATLVS+YTKGF II+EPF DK PTV NP+L+F
Sbjct: 353 SRLQTLMKTLQIPDPSNFGSLTLVAHLATLVSTYTKGFVIIIEPFDDKTPTVSNPILHFS 412
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+DSS+A++PVF RFQTV+ITSGTLSPLDMYPKIL+F PV+M SF+MTLARPC+LPM+
Sbjct: 413 CMDSSIAMRPVFGRFQTVIITSGTLSPLDMYPKILDFNPVVMSSFTMTLARPCILPMI 470
Score = 262 bits (670), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 120/195 (61%), Positives = 157/195 (80%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS+ER+GK+VDG+CHSLT+S +RDRH+ ++P+C FYE F+ GRE+ L GVY++ L
Sbjct: 97 VSREREGKLVDGKCHSLTASYIRDRHEQDPSVPICQFYEGFNREGRESMLPYGVYTMDDL 156
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K+ G + CPYFL+R AIIHA+IVVYSYHYLLDPKIA VVSKEL + +VVVFDEAHNID
Sbjct: 157 KQYGADRNWCPYFLSRFAIIHAEIVVYSYHYLLDPKIAEVVSKELNKEAVVVFDEAHNID 216
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DSLSV+I RRTI+K+ +QTLE + ++K+ D A+L EY ++VEGLR+A R+
Sbjct: 217 NVCIDSLSVKITRRTIDKSTQALQTLEKAVSQLKQEDEARLALEYEQMVEGLREAAQLRD 276
Query: 836 TDVVLANPVLPDEIL 850
+DV+L NPVLPDE+L
Sbjct: 277 SDVILGNPVLPDELL 291
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/124 (62%), Positives = 92/124 (74%), Gaps = 6/124 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + L+GKTDYGIMIFADKRF+RSDKRSKL
Sbjct: 611 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRSDKRSKL 669
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
P+WIQE+L D+L NLSTEEAVQ+SKRWLRQM+QPF+RED LGV+LL+L QL KE
Sbjct: 670 PRWIQEHLRDSLCNLSTEEAVQISKRWLRQMSQPFSREDQLGVSLLTLQQLQSKEQQEKI 729
Query: 936 EEEV 939
E++V
Sbjct: 730 EKQV 733
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/96 (72%), Positives = 79/96 (82%), Gaps = 1/96 (1%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M+ELK+ALDAKGH LLEMPSGTGKT SLLSLIVAYM +P V KL+YCSRTVPEIEKV+
Sbjct: 1 MLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYMIQNPHHVRKLIYCSRTVPEIEKVL 60
Query: 508 EELARLFDYYIK-HNEEINMTGLVLSSRKNLCIHSE 542
EEL L YY K E+ ++TG+VLSSRKNLCIH E
Sbjct: 61 EELKNLIKYYEKSQGEKPSLTGVVLSSRKNLCIHPE 96
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 74/90 (82%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + + S +ETR+D++VIRNYGQLLV+I+ VPDGVVCFFTSYLYLES
Sbjct: 465 CILP-MIVSKGSDQVAISSKYETREDVAVIRNYGQLLVEISACVPDGVVCFFTSYLYLES 523
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
VV +WYDQG++ NLQK KLLFIETQD+ ++
Sbjct: 524 VVGAWYDQGVVANLQKHKLLFIETQDSAET 553
>gi|38455510|gb|AAR20853.1| xeroderma pigmentosum D [Drosophila melanogaster]
Length = 685
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 251/418 (60%), Positives = 310/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER+GK VDG+C+ LT+S +R+RH+ P+C ++E F G+E+ L GVYSI L
Sbjct: 37 VSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDL 96
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 97 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 156
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L E Y R+V+GL+DA R
Sbjct: 157 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEXYQRMVQGLKDASVQRX 216
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD++LANPVLP+++L EVVPGNIR A+HF+ FL+RFIEY+KTRLRV VVQESPA FLKD
Sbjct: 217 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 276
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
IS SK+CIERKPLRFCA
Sbjct: 277 IS--------------------------------------------SKICIERKPLRFCA 292
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SLLRTLEI++LT++ +L +ITH ATLVS+YTKGF II+EPF DK PTV NP+L+F
Sbjct: 293 ERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHFS 352
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+ PVF RFQTVVITSGTLSP+DMYPKIL+F PV+M SF+MTLARPCLLPM+
Sbjct: 353 CLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMI 410
Score = 249 bits (636), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 113/195 (57%), Positives = 149/195 (76%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKER+GK VDG+C+ LT+S +R+RH+ P+C ++E F G+E+ L GVYSI L
Sbjct: 37 VSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDL 96
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct: 97 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 156
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L E Y R+V+GL+DA R
Sbjct: 157 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEXYQRMVQGLKDASVQRX 216
Query: 836 TDVVLANPVLPDEIL 850
TD++LANPVLP+++L
Sbjct: 217 TDMILANPVLPNDVL 231
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 88/122 (72%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + L+GKTDYGIMIFADKRF+R DKRS+L
Sbjct: 551 ARL-DYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRHDKRSRL 609
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+L D+ NLSTEEAVQL++RWLR+MAQPFTRED LG++LL+L QL E + E
Sbjct: 610 PKWIQEHLVDSFCNLSTEEAVQLARRWLRRMAQPFTREDQLGISLLTLAQLENMEQEKLE 669
Query: 936 EE 937
+
Sbjct: 670 RQ 671
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D +VIRNYGQLLV++A VPDG+VCFFTSYLYLES
Sbjct: 405 CLLP-MIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLES 463
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQD 649
VVASWYDQGI+D L + KLLFIETQD
Sbjct: 464 VVASWYDQGIVDTLLRYKLLFIETQD 489
>gi|604371|gb|AAA85822.1| ERCC2/XPD [Xiphophorus maculatus]
Length = 760
Score = 527 bits (1358), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/418 (60%), Positives = 312/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS R GK VDG+CHSLT+S +R + + N PVC FYE+FDAVGR+ PL G+Y++ L
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQRHSNPNQPVCRFYEEFDAVGRQVPLPAGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K+ GR G CPY+LAR +I+HA IVVYSYHYLLDPKIA++VSKELA+ SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV I RRT+++ N+ TL+ T+ ++KE D+AKLREEY RLVEGL++A ARE
Sbjct: 241 NVCIDSMSVNITRRTVDRCQNNVDTLQNTIHKIKETDAAKLREEYRRLVEGLKEANVARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD+ LANPVLPDE+LQE VPG+IRTAEHFVGFL+RF+EYLK RLRVQ VVQES FLKD
Sbjct: 301 TDIYLANPVLPDEVLQEAVPGSIRTAEHFVGFLRRFLEYLKARLRVQHVVQESAPQFLKD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
I KVCI+RKPLRFCA
Sbjct: 361 --------------------------------------------IFDKVCIDRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL LLRTLEI ++ DFS++ +I++ ATLVS+Y++GF II+EPF D+ PT+ NPVL+F
Sbjct: 377 ERLQCLLRTLEIADIADFSAVTLISNFATLVSTYSQGFTIIIEPFEDRTPTIANPVLHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D S+AIKPVF RFQ+V+ITSGTLSPLD+YP+IL+F+PV M SF+MTLAR CL P++
Sbjct: 437 CMDPSIAIKPVFQRFQSVIITSGTLSPLDIYPRILDFRPVTMASFTMTLARTCLCPLI 494
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 127/196 (64%), Positives = 159/196 (81%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS R GK VDG+CHSLT+S +R + + N PVC FYE+FDAVGR+ PL G+Y++ L
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQRHSNPNQPVCRFYEEFDAVGRQVPLPAGIYNLDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K+ GR G CPY+LAR +I+HA IVVYSYHYLLDPKIA++VSKELA+ SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV I RRT+++ N+ TL+ T+ ++KE D+AKLREEY RLVEGL++A ARE
Sbjct: 241 NVCIDSMSVNITRRTVDRCQNNVDTLQNTIHKIKETDAAKLREEYRRLVEGLKEANVARE 300
Query: 836 TDVVLANPVLPDEILQ 851
TD+ LANPVLPDE+LQ
Sbjct: 301 TDIYLANPVLPDEVLQ 316
Score = 176 bits (446), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 86/120 (71%), Positives = 98/120 (81%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L I+ L V+FPY+YIYPEQY+YM+ELK+ LDAKGH +LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSE 542
A PLDVTKL+YCSRTVPEIEKVVEEL +L ++Y K E+ N L LSSRKNLCIH E
Sbjct: 61 RAFPLDVTKLIYCSRTVPEIEKVVEELRKLMEFYAKETGEVNNFLALSLSSRKNLCIHPE 120
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 83/115 (72%), Gaps = 6/115 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+MIFADKR+ARSDKR KL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCLGRAIRGKTDYGLMIFADKRYARSDKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKE 930
P+WIQE++ D NL+ +EAVQLSK +LRQMAQPF +ED LG++LL+L+QL +E
Sbjct: 694 PRWIQEHINDGSLNLTVDEAVQLSKHFLRQMAQPFRQEDQLGLSLLTLEQLQSEE 748
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/138 (46%), Positives = 91/138 (65%), Gaps = 11/138 (7%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S FETR+D +VIRNYG LL++++ VVPDG+V FFTSY+Y+E++VASWY+QGI++N+QK
Sbjct: 504 LSSKFETREDFAVIRNYGNLLLEMSAVVPDGIVAFFTSYVYMENIVASWYEQGILENIQK 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAV 699
KL+FIETQDA ++ ++ +GR L S + R K E I DF F
Sbjct: 564 NKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA---RGKVSEGI---DFVHHF--- 614
Query: 700 GREAPL--APGVYSITKL 715
GR + P VY+ +++
Sbjct: 615 GRAVIMFGVPYVYTQSRI 632
>gi|410910536|ref|XP_003968746.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like [Takifugu rubripes]
Length = 760
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 252/418 (60%), Positives = 313/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS R GK VDG+CHSLT+S +R + + N+PVC ++E FDAVGR+ PL G+Y++ L
Sbjct: 121 VSALRFGKEVDGKCHSLTASYIRAQRHSDPNVPVCRYFEDFDAVGRQVPLPAGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K+ GR G CPY+LAR +I+HA IVVYSYHYLLDPKIA++VSKELA+ SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV I RRT+++ GN+ TL+ T+ ++K+ D+AKL+EEY RLVEGL++A ARE
Sbjct: 241 NVCIDSMSVNITRRTLDRCQGNVDTLQKTIHKIKDTDAAKLKEEYRRLVEGLKEANIARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TDV L+NPVLPDEIL+E VPG IRTAEHFVGFLKRF+EYLK+RLRVQ VVQES FLKD
Sbjct: 301 TDVYLSNPVLPDEILREAVPGTIRTAEHFVGFLKRFLEYLKSRLRVQHVVQESTPQFLKD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
I KVCI+RKPLRFCA
Sbjct: 361 --------------------------------------------IFEKVCIDRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLLRTLEI ++ DFS++ +I + ATLVS+Y++GF II+EPF D+ PT+ NPVL+F
Sbjct: 377 ERLQSLLRTLEIADIADFSAVTLIANFATLVSTYSQGFTIIIEPFEDRTPTIANPVLHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D S+AIKPVF RFQ+VVITSGTLSPLD+YPKIL+F+PV M SF+MTLAR CL P++
Sbjct: 437 CMDPSIAIKPVFQRFQSVVITSGTLSPLDIYPKILDFRPVTMASFTMTLARTCLCPLI 494
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 124/196 (63%), Positives = 160/196 (81%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS R GK VDG+CHSLT+S +R + + N+PVC ++E FDAVGR+ PL G+Y++ L
Sbjct: 121 VSALRFGKEVDGKCHSLTASYIRAQRHSDPNVPVCRYFEDFDAVGRQVPLPAGIYNLDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K+ GR G CPY+LAR +I+HA IVVYSYHYLLDPKIA++VSKELA+ SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV I RRT+++ GN+ TL+ T+ ++K+ D+AKL+EEY RLVEGL++A ARE
Sbjct: 241 NVCIDSMSVNITRRTLDRCQGNVDTLQKTIHKIKDTDAAKLKEEYRRLVEGLKEANIARE 300
Query: 836 TDVVLANPVLPDEILQ 851
TDV L+NPVLPDEIL+
Sbjct: 301 TDVYLSNPVLPDEILR 316
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 85/120 (70%), Positives = 97/120 (80%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L ID L V+FPY+YIYPEQY+YM+ELK+ LDAKGH +LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MRLNIDGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A PL+VTKL+YCSRTVPEIEKVVEEL +L +Y+ K + N L LSSRKNLCIH E
Sbjct: 61 KAFPLEVTKLIYCSRTVPEIEKVVEELRKLLEYHAKQTGQSNNFLALALSSRKNLCIHPE 120
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 83/115 (72%), Gaps = 6/115 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+MIFADKR+AR+DKR KL
Sbjct: 635 ARL-EYLRDHFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMIFADKRYARADKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKE 930
P+WIQE+++D NL+ +E +QLSK +LRQMAQPF +ED LG++LL+L+QL +E
Sbjct: 694 PRWIQEHISDGSLNLTIDETIQLSKHFLRQMAQPFRQEDQLGLSLLTLEQLESEE 748
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 90/138 (65%), Gaps = 11/138 (7%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S FETR+D +VIRNYG LL++++ +VPDG+V FFTSY+Y+E++VASWY+QGI++N+QK
Sbjct: 504 LSSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFTSYVYMENIVASWYEQGILENIQK 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAV 699
KL+FIET DA ++ ++ +GR L S + R K E I DF F
Sbjct: 564 NKLIFIETPDAAETSMALEKYQEACENGRGAILLSVA---RGKVSEGI---DFVHHF--- 614
Query: 700 GREAPL--APGVYSITKL 715
GR + P VY+ +++
Sbjct: 615 GRAVIMFGVPYVYTQSRI 632
>gi|195382171|ref|XP_002049804.1| GJ20544 [Drosophila virilis]
gi|194144601|gb|EDW60997.1| GJ20544 [Drosophila virilis]
Length = 769
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 245/418 (58%), Positives = 310/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER+GK VDG+C+ LT+S +R+ H+ +P+C ++E F G+E+ L G+YS+ L
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIREHHELDAEVPICQYFEGFTLEGKESTLPVGIYSLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE+ R + VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMTREACVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INRR +E++ + L +++M+E D+ +L EEY R+V+GL+DA R+
Sbjct: 241 NVCIDSMSVKINRRIVERSTNALNQLTKLVQDMREEDTNRLNEEYQRMVQGLKDASVQRD 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD++LANPVLP ++L+EVVPGNIR A+HF+ FL+RF+EY+KTRLRV VVQESPA FLKD
Sbjct: 301 TDMILANPVLPSDVLKEVVPGNIRNADHFLSFLRRFVEYIKTRLRVHHVVQESPAGFLKD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+S SK+CIERKPLRFCA
Sbjct: 361 VS--------------------------------------------SKICIERKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SLLRTLEI++LT++ +L +ITH ATLVS+YTKGF II+EPF DK PTV NP+++F
Sbjct: 377 ERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPIMHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+ PVF RFQTVVITSGTLSP+DMYPKIL+F PV+M SF+MTLARPCLLPM+
Sbjct: 437 CLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMI 494
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 110/196 (56%), Positives = 149/196 (76%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKER+GK VDG+C+ LT+S +R+ H+ +P+C ++E F G+E+ L G+YS+ L
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIREHHELDAEVPICQYFEGFTLEGKESTLPVGIYSLDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE+ R + VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMTREACVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INRR +E++ + L +++M+E D+ +L EEY R+V+GL+DA R+
Sbjct: 241 NVCIDSMSVKINRRIVERSTNALNQLTKLVQDMREEDTNRLNEEYQRMVQGLKDASVQRD 300
Query: 836 TDVVLANPVLPDEILQ 851
TD++LANPVLP ++L+
Sbjct: 301 TDMILANPVLPSDVLK 316
Score = 176 bits (446), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/120 (71%), Positives = 97/120 (80%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPYEYIYPEQYAYM+ELK++LDAKGHCLLEMPSGTGKT +LLSLIVAYM
Sbjct: 1 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNE-EINMTGLVLSSRKNLCIHSE 542
HP V KL+YCSRTVPEIEKV+ EL L YY +H +TGLVLSSRKN+CIH E
Sbjct: 61 IEHPETVRKLIYCSRTVPEIEKVIAELQNLMVYYDRHCPVPPGLTGLVLSSRKNMCIHPE 120
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/122 (57%), Positives = 88/122 (72%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + L+GKTDYGIMIFADKRF+R DKRS+L
Sbjct: 635 ARL-DYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRQDKRSRL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+L D+ NLSTEEAVQL++RWLR+MAQPF+RED LG++LL+L QL E + E
Sbjct: 694 PKWIQEHLVDSFCNLSTEEAVQLARRWLRRMAQPFSREDQLGISLLTLAQLESMEQEKLE 753
Query: 936 EE 937
+
Sbjct: 754 RQ 755
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D +VIRNYGQLLV++A VPDG+VCFFTSYLYLES
Sbjct: 489 CLLP-MIVSKGNDQVAISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLES 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQD 649
VVASWYDQGI+D L + KLLFIETQD
Sbjct: 548 VVASWYDQGIVDTLLRYKLLFIETQD 573
>gi|156400058|ref|XP_001638817.1| predicted protein [Nematostella vectensis]
gi|156225941|gb|EDO46754.1| predicted protein [Nematostella vectensis]
Length = 735
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 244/418 (58%), Positives = 315/418 (75%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ ER+GK VDG+C S+T+S VR +HK ++PVC+FYE FD++GR+ + PG Y++ L
Sbjct: 97 VAGEREGKKVDGKCLSMTASFVRLKHKEDSSVPVCNFYEDFDSLGRDEKMPPGSYNLDDL 156
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
++ GR+ G CPYFLAR+AI HA ++VYSYHY+LDPKIA++VSKEL + +VVVFDEAHNID
Sbjct: 157 RQFGRKKGWCPYFLARRAIYHANVIVYSYHYMLDPKIADLVSKELDKKAVVVFDEAHNID 216
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV I+RRT++++ N+++L + +K D+ KLREEY RLVEGLR A AR+
Sbjct: 217 NVCIDSMSVTISRRTLDRSHANVESLASVIDRIKATDAQKLREEYNRLVEGLRQASEARD 276
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD+VL+NPVLPDE+LQE VPGNIR AEHFVGF++RFIEYLKTRLR+Q VVQESP +FL
Sbjct: 277 TDIVLSNPVLPDEVLQESVPGNIRKAEHFVGFMRRFIEYLKTRLRIQHVVQESPMSFL-- 334
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
Q + Q+ VCIERKPLRFCA
Sbjct: 335 ------------------------------QHIYQQ------------VCIERKPLRFCA 352
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SLLRTLEI + D+ LV+I + ATLVS+Y KGF II+EPF D+ PT+PNP+L+F
Sbjct: 353 ERLSSLLRTLEIPEMQDYGPLVLIANFATLVSTYNKGFNIIIEPFDDRTPTIPNPILHFS 412
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+S+A+KPVFDRFQ+VVITSGTLSP+DMYPKIL+F+PV M +F+MTLAR CL PM+
Sbjct: 413 CMDASIAVKPVFDRFQSVVITSGTLSPIDMYPKILDFRPVTMATFTMTLARTCLCPMI 470
Score = 263 bits (673), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 116/196 (59%), Positives = 159/196 (81%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
V+ ER+GK VDG+C S+T+S VR +HK ++PVC+FYE FD++GR+ + PG Y++ L
Sbjct: 97 VAGEREGKKVDGKCLSMTASFVRLKHKEDSSVPVCNFYEDFDSLGRDEKMPPGSYNLDDL 156
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
++ GR+ G CPYFLAR+AI HA ++VYSYHY+LDPKIA++VSKEL + +VVVFDEAHNID
Sbjct: 157 RQFGRKKGWCPYFLARRAIYHANVIVYSYHYMLDPKIADLVSKELDKKAVVVFDEAHNID 216
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV I+RRT++++ N+++L + +K D+ KLREEY RLVEGLR A AR+
Sbjct: 217 NVCIDSMSVTISRRTLDRSHANVESLASVIDRIKATDAQKLREEYNRLVEGLRQASEARD 276
Query: 836 TDVVLANPVLPDEILQ 851
TD+VL+NPVLPDE+LQ
Sbjct: 277 TDIVLSNPVLPDEVLQ 292
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 68/96 (70%), Positives = 80/96 (83%), Gaps = 1/96 (1%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M+ELK+ LDAKGHCLLEMPSGTGKT SLLSLIVAY+ PL++TKL+YCSRTVPEIEKV+
Sbjct: 1 MLELKRTLDAKGHCLLEMPSGTGKTVSLLSLIVAYLKNKPLELTKLIYCSRTVPEIEKVM 60
Query: 508 EELARLFDYY-IKHNEEINMTGLVLSSRKNLCIHSE 542
EEL +L +YY + E+ N+ L LSSRKNLCIH E
Sbjct: 61 EELKKLTEYYESETGEKPNILALALSSRKNLCIHPE 96
Score = 126 bits (317), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 87/118 (73%), Gaps = 6/118 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ + RE D + + + ++GKTDYGIM+FADKRF++ DKR KL
Sbjct: 611 ARL-EYLREQFNIRENDFLTFDAMRHAAQCVGRAIRGKTDYGIMVFADKRFSKVDKRGKL 669
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHAR 933
PKWIQEYL ++L NLST+E+VQ++KR+LRQMAQPF RED LG++LL+ +Q+ +E +
Sbjct: 670 PKWIQEYLKESLCNLSTDESVQIAKRFLRQMAQPFEREDQLGLSLLTFEQVQSEEFQK 727
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 80/125 (64%), Gaps = 4/125 (3%)
Query: 563 ACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLE 622
C+ P +V + + + + FE R+D++VIRNYG LL +++ VVPDG+VCFFTSYLY+E
Sbjct: 464 TCLCP-MIVSRGSDQVAMTTKFEMREDLAVIRNYGNLLTEMSAVVPDGIVCFFTSYLYME 522
Query: 623 SVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHK 682
SVV+ W+DQGII N+QK KLLFIET DA ++ +GR L S + R K
Sbjct: 523 SVVSLWHDQGIISNIQKNKLLFIETTDAAETSLALHNYQKACENGRGAILLSVA---RGK 579
Query: 683 AGENI 687
E I
Sbjct: 580 VSEGI 584
>gi|194754721|ref|XP_001959643.1| GF11940 [Drosophila ananassae]
gi|190620941|gb|EDV36465.1| GF11940 [Drosophila ananassae]
Length = 770
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/418 (60%), Positives = 309/418 (73%), Gaps = 45/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER+GK VDG+C+ LT+S +RDRH+ P+C +YE F G+E+ L GVYSI L
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRDRHEMDSETPICQYYEGFTLEGKESTLPVGVYSIDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE+ R S VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMTRESCVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA RE
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNQLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD++LANPVLP+++L EVVPGNIR A+HF+ FL+RFIEY+KTRLRV VVQESPA FLKD
Sbjct: 301 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
IS SK+CIERKPLRFCA
Sbjct: 361 IS--------------------------------------------SKICIERKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SLLRTLEI+++T++ +L +ITH ATLVS+YTKGF II++ DK PTV NP+L+F
Sbjct: 377 ERLSSLLRTLEISDMTEYGALTLITHFATLVSTYTKGFTIIID-LDDKTPTVSNPILHFS 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+ PVF RFQTVVITSGTLSP+DMYPKIL+F PV+M SF+MTLARPCLLPM+
Sbjct: 436 CLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMI 493
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 117/195 (60%), Positives = 150/195 (76%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKER+GK VDG+C+ LT+S +RDRH+ P+C +YE F G+E+ L GVYSI L
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRDRHEMDSETPICQYYEGFTLEGKESTLPVGVYSIDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE GR CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE+ R S VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMTRESCVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV+INRRT+E++ + L +++++E D+ +L EEY R+V+GL+DA RE
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNQLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRE 300
Query: 836 TDVVLANPVLPDEIL 850
TD++LANPVLP+++L
Sbjct: 301 TDMILANPVLPNDVL 315
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/120 (70%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPYEYIYPEQYAYM+ELK++LDAKGHCLLEMPSGTGKT +LLSLIVAYM
Sbjct: 1 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+P V KL+YCSRTVPEIEKV+ EL L YY ++ TGLVLSSRKN+CIH E
Sbjct: 61 VEYPETVRKLIYCSRTVPEIEKVIAELQNLMAYYERNCPNPPPFTGLVLSSRKNMCIHPE 120
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 88/122 (72%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + L+GKTDYGIMIFADKRF+R DKRS+L
Sbjct: 634 ARL-DYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRQDKRSRL 692
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+L D+ NLSTEEAVQL++RWLR+MAQPFTRED LG++LL+L QL E + E
Sbjct: 693 PKWIQEHLVDSFCNLSTEEAVQLARRWLRRMAQPFTREDQLGISLLTLSQLENMEQEKLE 752
Query: 936 EE 937
+
Sbjct: 753 RQ 754
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D +VIRNYGQLLV++A VPDG+VCFFTSYLYLES
Sbjct: 488 CLLP-MIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLES 546
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQD 649
VVASWYDQGI+D L + KLLFIETQD
Sbjct: 547 VVASWYDQGIVDTLLRYKLLFIETQD 572
>gi|390366297|ref|XP_003731011.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit isoform 1 [Strongylocentrotus purpuratus]
Length = 672
Score = 524 bits (1349), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/419 (59%), Positives = 314/419 (74%), Gaps = 45/419 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER GK+VD +CHSLT+S +R+R K +P+CDFYE+FDA GR++P+ PG YS+ L
Sbjct: 121 VSKERIGKVVDSKCHSLTASYIRERRKHDPAVPICDFYEEFDAAGRDSPIEPGAYSLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE+GR+ G CPYFLAR I HA I+VYSYHYLLDPKIA VSKEL++ S V+FDEAHNID
Sbjct: 181 KEIGRQNGWCPYFLARYTITHANIIVYSYHYLLDPKIAEQVSKELSKQSAVIFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++S+SV I+R+T++K+ N+ +L + +K+ D+ +LREEY RLV+GLR+A ARE
Sbjct: 241 NVCIESMSVNISRKTLDKSNQNLDSLTRHINRIKDTDAQRLREEYQRLVDGLREASRARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TDV L+NP LPDE+L E VPGNIRTAEHF+GFL+RF+EYLKTRLRVQ V+ E+PA+FLKD
Sbjct: 301 TDVHLSNPALPDEVLDEAVPGNIRTAEHFIGFLRRFVEYLKTRLRVQHVISETPASFLKD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ SKVCIERKPLRFCA
Sbjct: 361 --------------------------------------------VFSKVCIERKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTD-FSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYF 359
ERL SLLRTLE+T++ D S LV ++ ATLVS+YTKGF++I+EPF DK PT+ NPVL+F
Sbjct: 377 ERLHSLLRTLELTDVQDNMSPLVAVSGFATLVSTYTKGFSLIIEPFDDKTPTISNPVLHF 436
Query: 360 CCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+S+AIKPVFDRFQ+VVITSGTLSPLDMYPKIL+F+PV M SFSMTL+R + P++
Sbjct: 437 SCMDASIAIKPVFDRFQSVVITSGTLSPLDMYPKILDFRPVSMASFSMTLSRSSICPII 495
Score = 266 bits (679), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 119/195 (61%), Positives = 156/195 (80%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKER GK+VD +CHSLT+S +R+R K +P+CDFYE+FDA GR++P+ PG YS+ L
Sbjct: 121 VSKERIGKVVDSKCHSLTASYIRERRKHDPAVPICDFYEEFDAAGRDSPIEPGAYSLDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE+GR+ G CPYFLAR I HA I+VYSYHYLLDPKIA VSKEL++ S V+FDEAHNID
Sbjct: 181 KEIGRQNGWCPYFLARYTITHANIIVYSYHYLLDPKIAEQVSKELSKQSAVIFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC++S+SV I+R+T++K+ N+ +L + +K+ D+ +LREEY RLV+GLR+A ARE
Sbjct: 241 NVCIESMSVNISRKTLDKSNQNLDSLTRHINRIKDTDAQRLREEYQRLVDGLREASRARE 300
Query: 836 TDVVLANPVLPDEIL 850
TDV L+NP LPDE+L
Sbjct: 301 TDVHLSNPALPDEVL 315
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/120 (68%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + +D L V FPY+YIYPEQ+ YM+ELKK LDAKGH +LEMPSGTGKT SLL+LIVAY+
Sbjct: 1 MKVNVDGLLVHFPYDYIYPEQFMYMMELKKLLDAKGHGVLEMPSGTGKTVSLLALIVAYI 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+P ++TKL+YCSRTVPEIEK VEEL RL DY + E+ N GL LSSRKNLCIH E
Sbjct: 61 QANPHELTKLIYCSRTVPEIEKAVEELRRLLDYIEEQTGEKPNFVGLALSSRKNLCIHPE 120
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 100/171 (58%), Gaps = 17/171 (9%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE+R+D++VIRNYG L+V+++ +VPDG+V FFTSY Y+ESVVA+WY+QGIID++QK
Sbjct: 505 ISSRFESREDVAVIRNYGNLIVELSGIVPDGIVAFFTSYTYMESVVATWYEQGIIDSIQK 564
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAV 699
KLLFIETQDA ++ +GR L S + R K E I DF +
Sbjct: 565 NKLLFIETQDAAETSIALNNYHKACENGRGAILLSVA---RGKVSEGI---DFDHHY--- 615
Query: 700 GREAPL--APGVYSITKLKEMGRELGLCPY------FLARQAIIHAKIVVY 742
GR + P VY+ +++ + E Y FL A+ HA V Y
Sbjct: 616 GRAVIMLGIPYVYTQSRILKARLEYLRDQYQIKENDFLTFDAMRHAAQVCY 666
>gi|390366295|ref|XP_780825.3| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit isoform 2 [Strongylocentrotus purpuratus]
Length = 734
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/419 (59%), Positives = 314/419 (74%), Gaps = 45/419 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER GK+VD +CHSLT+S +R+R K +P+CDFYE+FDA GR++P+ PG YS+ L
Sbjct: 121 VSKERIGKVVDSKCHSLTASYIRERRKHDPAVPICDFYEEFDAAGRDSPIEPGAYSLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE+GR+ G CPYFLAR I HA I+VYSYHYLLDPKIA VSKEL++ S V+FDEAHNID
Sbjct: 181 KEIGRQNGWCPYFLARYTITHANIIVYSYHYLLDPKIAEQVSKELSKQSAVIFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++S+SV I+R+T++K+ N+ +L + +K+ D+ +LREEY RLV+GLR+A ARE
Sbjct: 241 NVCIESMSVNISRKTLDKSNQNLDSLTRHINRIKDTDAQRLREEYQRLVDGLREASRARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TDV L+NP LPDE+L E VPGNIRTAEHF+GFL+RF+EYLKTRLRVQ V+ E+PA+FLKD
Sbjct: 301 TDVHLSNPALPDEVLDEAVPGNIRTAEHFIGFLRRFVEYLKTRLRVQHVISETPASFLKD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ SKVCIERKPLRFCA
Sbjct: 361 --------------------------------------------VFSKVCIERKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTD-FSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYF 359
ERL SLLRTLE+T++ D S LV ++ ATLVS+YTKGF++I+EPF DK PT+ NPVL+F
Sbjct: 377 ERLHSLLRTLELTDVQDNMSPLVAVSGFATLVSTYTKGFSLIIEPFDDKTPTISNPVLHF 436
Query: 360 CCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+S+AIKPVFDRFQ+VVITSGTLSPLDMYPKIL+F+PV M SFSMTL+R + P++
Sbjct: 437 SCMDASIAIKPVFDRFQSVVITSGTLSPLDMYPKILDFRPVSMASFSMTLSRSSICPII 495
Score = 266 bits (679), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 119/195 (61%), Positives = 156/195 (80%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKER GK+VD +CHSLT+S +R+R K +P+CDFYE+FDA GR++P+ PG YS+ L
Sbjct: 121 VSKERIGKVVDSKCHSLTASYIRERRKHDPAVPICDFYEEFDAAGRDSPIEPGAYSLDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE+GR+ G CPYFLAR I HA I+VYSYHYLLDPKIA VSKEL++ S V+FDEAHNID
Sbjct: 181 KEIGRQNGWCPYFLARYTITHANIIVYSYHYLLDPKIAEQVSKELSKQSAVIFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC++S+SV I+R+T++K+ N+ +L + +K+ D+ +LREEY RLV+GLR+A ARE
Sbjct: 241 NVCIESMSVNISRKTLDKSNQNLDSLTRHINRIKDTDAQRLREEYQRLVDGLREASRARE 300
Query: 836 TDVVLANPVLPDEIL 850
TDV L+NP LPDE+L
Sbjct: 301 TDVHLSNPALPDEVL 315
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/120 (68%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + +D L V FPY+YIYPEQ+ YM+ELKK LDAKGH +LEMPSGTGKT SLL+LIVAY+
Sbjct: 1 MKVNVDGLLVHFPYDYIYPEQFMYMMELKKLLDAKGHGVLEMPSGTGKTVSLLALIVAYI 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+P ++TKL+YCSRTVPEIEK VEEL RL DY + E+ N GL LSSRKNLCIH E
Sbjct: 61 QANPHELTKLIYCSRTVPEIEKAVEELRRLLDYIEEQTGEKPNFVGLALSSRKNLCIHPE 120
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 75/107 (70%), Gaps = 20/107 (18%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE+R+D++VIRNYG L+V+++ +VPDG+V FFTSY Y+ESVVA+WY+QGIID++QK
Sbjct: 505 ISSRFESREDVAVIRNYGNLIVELSGIVPDGIVAFFTSYTYMESVVATWYEQGIIDSIQK 564
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGEN 686
KLLFIETQDA + TS ++ + HKA EN
Sbjct: 565 NKLLFIETQDAAE--------------------TSIALNNYHKACEN 591
>gi|443703659|gb|ELU01094.1| hypothetical protein CAPTEDRAFT_167887 [Capitella teleta]
Length = 786
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/415 (58%), Positives = 314/415 (75%), Gaps = 44/415 (10%)
Query: 4 ERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEM 63
+RDGK +D RCH++T+S VR+RH+ ++IPVC +YE +DA GRE PL PG+Y + KL+E
Sbjct: 150 QRDGKEIDARCHAMTASHVRNRHQEDDSIPVCSYYEDYDAHGREVPLPPGIYDLDKLREY 209
Query: 64 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 123
G E G CPYF+AR AI+H+ IVVYSY+YLLDPKIA++VSKEL++ SVVVFDEAHNID+VC
Sbjct: 210 GTEKGWCPYFMARYAIMHSSIVVYSYYYLLDPKIADLVSKELSKKSVVVFDEAHNIDSVC 269
Query: 124 VDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDV 183
++S+S I+RRT++K NI+ L+ + +KE D KL++EY R+VEGLRDA ARETDV
Sbjct: 270 IESMSCVISRRTVDKCHTNIEKLQECIDTIKEHDQQKLKDEYLRMVEGLRDANVARETDV 329
Query: 184 VLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISS 243
VL+NPVLPDE+LQE VPG IR AEHF+ F+KRF+EY+KTRLR Q VVQESP FL+DI
Sbjct: 330 VLSNPVLPDEVLQEAVPGGIRNAEHFLVFMKRFLEYIKTRLRAQHVVQESPPVFLRDI-- 387
Query: 244 KPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERL 303
S+KVCI+RKPLRFC+ERL
Sbjct: 388 ------------------------------------------SNKVCIDRKPLRFCSERL 405
Query: 304 ASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLD 363
SLLRTLE+TNL DFS L ++ + AT+VS+YTKGF +I+EPF D+ PT+ NP+L+F C+D
Sbjct: 406 RSLLRTLELTNLQDFSPLTLMANFATMVSTYTKGFTLIMEPFDDRTPTISNPILHFSCMD 465
Query: 364 SSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
+S+AIKPVFDRFQ+V+ITSGTLSPLD+YPKIL+F+PV M S++MTLAR C+LP++
Sbjct: 466 ASIAIKPVFDRFQSVIITSGTLSPLDIYPKILDFRPVTMSSYTMTLARQCILPLI 520
Score = 268 bits (685), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 160/200 (80%)
Query: 659 ERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEM 718
+RDGK +D RCH++T+S VR+RH+ ++IPVC +YE +DA GRE PL PG+Y + KL+E
Sbjct: 150 QRDGKEIDARCHAMTASHVRNRHQEDDSIPVCSYYEDYDAHGREVPLPPGIYDLDKLREY 209
Query: 719 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 778
G E G CPYF+AR AI+H+ IVVYSY+YLLDPKIA++VSKEL++ SVVVFDEAHNID+VC
Sbjct: 210 GTEKGWCPYFMARYAIMHSSIVVYSYYYLLDPKIADLVSKELSKKSVVVFDEAHNIDSVC 269
Query: 779 VDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDV 838
++S+S I+RRT++K NI+ L+ + +KE D KL++EY R+VEGLRDA ARETDV
Sbjct: 270 IESMSCVISRRTVDKCHTNIEKLQECIDTIKEHDQQKLKDEYLRMVEGLRDANVARETDV 329
Query: 839 VLANPVLPDEILQGKTDYGI 858
VL+NPVLPDE+LQ GI
Sbjct: 330 VLSNPVLPDEVLQEAVPGGI 349
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/122 (70%), Positives = 97/122 (79%), Gaps = 1/122 (0%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
+D L V+FPY+YIYPEQYAYM ELK+ALDA+GHC LEMPSGTGKT SLLSLIVAYM P
Sbjct: 31 LDGLLVYFPYDYIYPEQYAYMQELKRALDAQGHCALEMPSGTGKTVSLLSLIVAYMKQRP 90
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSEFETR 546
LDVTKL+YCSRTVPE+EKVVEEL L +YY + E + GL LSSRKNLCIH E +
Sbjct: 91 LDVTKLIYCSRTVPELEKVVEELKNLIEYYERETGEPSTLVGLALSSRKNLCIHPELRGQ 150
Query: 547 DD 548
D
Sbjct: 151 RD 152
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/111 (59%), Positives = 82/111 (73%), Gaps = 6/111 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD + RE D + + + L+GKTDYGIMIFADKRF R+DKR KL
Sbjct: 661 ARL-EYLRDNFNIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFGRADKRQKL 719
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
P+WIQE+L D + NLSTEE VQ+ KR+LRQMAQPF+RED LG +LL+L+Q+
Sbjct: 720 PRWIQEHLKDGVCNLSTEECVQVCKRFLRQMAQPFSREDQLGHSLLTLEQV 770
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 71/90 (78%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D VIRNYG LLVD+A VVPDGVV FFTSY+Y+E+
Sbjct: 515 CILP-LIVSRGNDQVTISSKFETREDPDVIRNYGNLLVDLAAVVPDGVVAFFTSYVYMET 573
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+VA+WYDQGIID +Q+ K+LFIETQDA ++
Sbjct: 574 IVAAWYDQGIIDQVQRHKVLFIETQDAAET 603
>gi|213511929|ref|NP_001133411.1| TFIIH basal transcription factor complex helicase subunit [Salmo
salar]
gi|209153902|gb|ACI33183.1| TFIIH basal transcription factor complex helicase subunit [Salmo
salar]
Length = 760
Score = 520 bits (1339), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/418 (58%), Positives = 316/418 (75%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS R GK VDG+CHSLT+S +R + ++ ++P C FYE+FDA+G++ PL GVY++ L
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQRQSNPSLPSCRFYEEFDAMGKQVPLPAGVYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K+ GR G CPY+LAR +I+HA I+VYSYHYLLDPKIA++VSKEL++ SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYYLARYSILHANIIVYSYHYLLDPKIADLVSKELSKKSVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV I RRT++++ N++TL+ T+ ++KE D+AKL+EEY RLVEGL++A ARE
Sbjct: 241 NVCIDSMSVNITRRTLDRSQANVETLQNTILKIKETDAAKLKEEYRRLVEGLKEANVARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD+ ++NPVLPDEILQE VPG+IRTAEHFVGF+KRF+EYLK RLR+ VVQES FLKD
Sbjct: 301 TDIYMSNPVLPDEILQEAVPGSIRTAEHFVGFMKRFLEYLKARLRIHHVVQESAPQFLKD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
I KVCI+RKPLRFCA
Sbjct: 361 --------------------------------------------IFEKVCIDRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLLRTLEI ++ DFS++ +I++ ATLVS+Y+KGF II+EPF D+ PT+ NPVL+F
Sbjct: 377 ERLRSLLRTLEIADIADFSAITLISNFATLVSTYSKGFTIIIEPFEDRTPTIANPVLHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D S+AIKPVF+RFQ+V+ITSGTLSPLD+YP+IL+F+PV + SF+MTLAR CL P+V
Sbjct: 437 CMDPSIAIKPVFERFQSVIITSGTLSPLDIYPRILDFRPVTVASFTMTLARTCLCPLV 494
Score = 269 bits (687), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 120/196 (61%), Positives = 162/196 (82%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS R GK VDG+CHSLT+S +R + ++ ++P C FYE+FDA+G++ PL GVY++ L
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQRQSNPSLPSCRFYEEFDAMGKQVPLPAGVYNLDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K+ GR G CPY+LAR +I+HA I+VYSYHYLLDPKIA++VSKEL++ SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYYLARYSILHANIIVYSYHYLLDPKIADLVSKELSKKSVVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV I RRT++++ N++TL+ T+ ++KE D+AKL+EEY RLVEGL++A ARE
Sbjct: 241 NVCIDSMSVNITRRTLDRSQANVETLQNTILKIKETDAAKLKEEYRRLVEGLKEANVARE 300
Query: 836 TDVVLANPVLPDEILQ 851
TD+ ++NPVLPDEILQ
Sbjct: 301 TDIYMSNPVLPDEILQ 316
Score = 172 bits (435), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 83/120 (69%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L I+ L V+FPY+YIYPEQY+YM+ELK+ LDAKGH +LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+PL+VTKL+YCSRTVPEIEKVVEEL +L ++Y K E+ N+ L LSSRKNLC+H E
Sbjct: 61 REYPLEVTKLIYCSRTVPEIEKVVEELRKLMEFYSKETGEKNNILALALSSRKNLCVHPE 120
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 81/111 (72%), Gaps = 6/111 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+MIFADKR+AR+DKR KL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMIFADKRYARADKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
P+WIQE+LTD NL+ +E VQLSK +LRQMAQPF +ED LG++LL+L+QL
Sbjct: 694 PRWIQEHLTDGSLNLTIDETVQLSKHFLRQMAQPFRQEDQLGLSLLTLEQL 744
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 89/138 (64%), Gaps = 11/138 (7%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+D +VIRNYG LL++++ +VPDG+V FFTSY Y+E++VASWY+QGI++N+Q+
Sbjct: 504 MTSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFTSYTYMENIVASWYEQGILENVQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAV 699
KL+FIET DA ++ ++ +GR L S + R K E I DF F
Sbjct: 564 NKLIFIETPDAAETSMALEKYQEACENGRGAILLSVA---RGKVSEGI---DFVHHF--- 614
Query: 700 GREAPL--APGVYSITKL 715
GR + P VY+ +++
Sbjct: 615 GRAVIMFGVPYVYTQSRI 632
>gi|355703655|gb|EHH30146.1| hypothetical protein EGK_10751 [Macaca mulatta]
Length = 760
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 246/418 (58%), Positives = 311/418 (74%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FDA GRE PL G+Y++ L
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARE
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESPA+F
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQPVVQESPASF--- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 358 -----------------------------------------LSGLAQRVCIQRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEIT+L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 377 ERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 437 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 494
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 170/229 (74%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 88 RKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 147
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FDA GRE PL G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 148 HDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVY 207
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ GN++TL+
Sbjct: 208 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQ 267
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 268 KTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 316
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 564 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 616
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 69/99 (69%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR DKR KL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 694 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 732
>gi|403299021|ref|XP_003940291.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit isoform 1 [Saimiri boliviensis boliviensis]
Length = 782
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/418 (58%), Positives = 309/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FD GRE PL PG+Y++ L
Sbjct: 143 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDTHGREVPLPPGIYNLDDL 202
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 203 KALGRHHGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 262
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARE
Sbjct: 263 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 322
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 323 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 379
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 380 -----------------------------------------LSGLAQRVCIQRKPLRFCA 398
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEIT+L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 399 ERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFS 458
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 459 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 516
Score = 269 bits (688), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 170/229 (74%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 110 RKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 169
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FD GRE PL PG+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 170 HDTSLPHCRFYEEFDTHGREVPLPPGIYNLDDLKALGRHHGWCPYFLARYSILHANVVVY 229
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ GN++TL+
Sbjct: 230 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQ 289
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 290 KTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 338
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 81/121 (66%), Positives = 99/121 (81%), Gaps = 1/121 (0%)
Query: 423 AMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
A L +D L V+FPY+YIYPEQ++YM ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 22 AARLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAY 81
Query: 483 MNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHS 541
A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH
Sbjct: 82 QRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHP 141
Query: 542 E 542
E
Sbjct: 142 E 142
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 526 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 585
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 586 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 638
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 70/99 (70%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 657 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 715
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 716 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 754
>gi|296234099|ref|XP_002762284.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit isoform 1 [Callithrix jacchus]
Length = 760
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/418 (58%), Positives = 309/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FD GRE PL PG+Y++ L
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDTHGREVPLPPGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 181 KALGRHQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARE
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 358 -----------------------------------------LSGLAQRVCIQRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEIT+L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 377 ERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 437 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 494
Score = 269 bits (688), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 170/229 (74%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 88 RKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 147
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FD GRE PL PG+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 148 HDTSLPHCRFYEEFDTHGREVPLPPGIYNLDDLKALGRHQGWCPYFLARYSILHANVVVY 207
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ GN++TL+
Sbjct: 208 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQ 267
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 268 KTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 316
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 564 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 616
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 70/99 (70%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 694 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 732
>gi|297705154|ref|XP_002829448.1| PREDICTED: LOW QUALITY PROTEIN: TFIIH basal transcription factor
complex helicase XPD subunit-like [Pongo abelii]
Length = 724
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/418 (58%), Positives = 309/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FDA GRE PL+ G+Y++ L
Sbjct: 85 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLSAGIYNLDDL 144
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 145 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 204
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ GN++TL+ T+ +KE D +LR+EY RLVEGLR+A ARE
Sbjct: 205 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASVARE 264
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 265 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 321
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 322 -----------------------------------------LSGLAQRVCIQRKPLRFCA 340
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEIT+L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 341 ERLRSLLYTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFS 400
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 401 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 458
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 170/229 (74%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 52 RKLLNFYEKQEGEKLQFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 111
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FDA GRE PL+ G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 112 HDTSLPHCRFYEEFDAHGREVPLSAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVY 171
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ GN++TL+
Sbjct: 172 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQ 231
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A ARETD LANPVLPDE+LQ
Sbjct: 232 KTVLRIKETDEQRLRDEYRRLVEGLREASVARETDAHLANPVLPDEVLQ 280
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 68/82 (82%), Gaps = 1/82 (1%)
Query: 462 LLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH- 520
+LEMPSGTGKT SLL+LI+AY A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K
Sbjct: 3 VLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQE 62
Query: 521 NEEINMTGLVLSSRKNLCIHSE 542
E++ GL LSSRKNLCIH E
Sbjct: 63 GEKLQFLGLALSSRKNLCIHPE 84
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 468 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 527
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 528 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 580
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 65/93 (69%), Gaps = 5/93 (5%)
Query: 827 LRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQE 881
LRD RE D + + + ++GKTDYG+M+FADKRFAR DKR KLP+WIQE
Sbjct: 604 LRDQFQIRENDFLTLDTMRHAAQXVGRAIRGKTDYGLMVFADKRFARGDKRGKLPRWIQE 663
Query: 882 YLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 664 HLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 696
>gi|350538411|ref|NP_001233519.1| TFIIH basal transcription factor complex helicase subunit [Pan
troglodytes]
gi|397493359|ref|XP_003817575.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit isoform 1 [Pan paniscus]
gi|343958692|dbj|BAK63201.1| TFIIH basal transcription factor complex helicase subunit [Pan
troglodytes]
Length = 760
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/418 (58%), Positives = 309/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FDA GRE PL G+Y++ L
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDSSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARE
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 358 -----------------------------------------LSGLAQRVCIQRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEIT+L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 377 ERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 437 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 494
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 170/229 (74%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 88 RKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 147
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FDA GRE PL G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 148 HDSSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVY 207
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ GN++TL+
Sbjct: 208 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQ 267
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 268 KTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 316
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 564 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 616
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 69/99 (69%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR DKR KL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 694 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 732
>gi|380799421|gb|AFE71586.1| TFIIH basal transcription factor complex helicase XPD subunit
isoform 1, partial [Macaca mulatta]
Length = 771
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/418 (58%), Positives = 309/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FDA GRE PL G+Y++ L
Sbjct: 132 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 191
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 192 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 251
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARE
Sbjct: 252 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 311
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 312 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 368
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 369 -----------------------------------------LSGLAQRVCIQRKPLRFCA 387
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEIT+L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 388 ERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFS 447
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 448 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 505
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 170/229 (74%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 99 RKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 158
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FDA GRE PL G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 159 HDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVY 218
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ GN++TL+
Sbjct: 219 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQ 278
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 279 KTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 327
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 81/121 (66%), Positives = 99/121 (81%), Gaps = 1/121 (0%)
Query: 423 AMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
A L +D L V+FPY+YIYPEQ++YM ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 11 AARLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAY 70
Query: 483 MNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHS 541
A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH
Sbjct: 71 QRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHP 130
Query: 542 E 542
E
Sbjct: 131 E 131
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 515 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 574
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 575 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 627
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 69/99 (69%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR DKR KL
Sbjct: 646 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKL 704
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 705 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 743
>gi|426389184|ref|XP_004061004.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit [Gorilla gorilla gorilla]
gi|83405523|gb|AAI10524.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 2 [Homo sapiens]
gi|119577745|gb|EAW57341.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 (xeroderma pigmentosum D),
isoform CRA_a [Homo sapiens]
gi|383416479|gb|AFH31453.1| TFIIH basal transcription factor complex helicase XPD subunit
isoform 1 [Macaca mulatta]
Length = 760
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/418 (58%), Positives = 309/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FDA GRE PL G+Y++ L
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARE
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 358 -----------------------------------------LSGLAQRVCIQRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEIT+L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 377 ERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 437 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 494
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 170/229 (74%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 88 RKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 147
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FDA GRE PL G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 148 HDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVY 207
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ GN++TL+
Sbjct: 208 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQ 267
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 268 KTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 316
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 564 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 616
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 69/99 (69%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR DKR KL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 694 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 732
>gi|344269323|ref|XP_003406502.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit [Loxodonta africana]
Length = 845
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/418 (58%), Positives = 308/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FD GR+ PL+ G+Y++ L
Sbjct: 203 VTPLRFGKDVDGKCHSLTASYVRAQYQQDSSLPHCSFYEEFDTHGRQVPLSAGIYNLDDL 262
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 263 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 322
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV I RRT+++ GN++TL+ T+ +KE D +LREEY RLVEGLR+A +ARE
Sbjct: 323 NVCIDSMSVNITRRTLDRCQGNLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARE 382
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 383 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 439
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 440 -----------------------------------------LSGLAQRVCIQRKPLRFCA 458
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEI +L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 459 ERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFS 518
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 519 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 576
Score = 268 bits (686), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 170/229 (74%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 170 RKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 229
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FD GR+ PL+ G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 230 QDSSLPHCSFYEEFDTHGRQVPLSAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVY 289
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV I RRT+++ GN++TL+
Sbjct: 290 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNITRRTLDRCQGNLETLQ 349
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LREEY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 350 KTVLRIKETDEQRLREEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 398
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/121 (67%), Positives = 101/121 (83%), Gaps = 1/121 (0%)
Query: 423 AMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
AM L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 82 AMKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAY 141
Query: 483 MNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHS 541
A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH
Sbjct: 142 QRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHP 201
Query: 542 E 542
E
Sbjct: 202 E 202
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 91/138 (65%), Gaps = 8/138 (5%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 586 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 645
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAV 699
KLLFIETQD ++ SV+ E+ + + + SS R + G +F+E
Sbjct: 646 NKLLFIETQDGAET-SVALEKYQEGWEKGRGGIPVSSARGKMSEGN-----EFWEGVHHY 699
Query: 700 GREAPL--APGVYSITKL 715
GR + P VY+ +++
Sbjct: 700 GRAVIMFGVPYVYTQSRI 717
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 70/99 (70%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 720 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 778
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 779 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 817
>gi|21322260|gb|AAM45142.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 (xeroderma pigmentosum D) [Homo
sapiens]
Length = 736
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/418 (58%), Positives = 309/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FDA GRE PL G+Y++ L
Sbjct: 97 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 156
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 157 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 216
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARE
Sbjct: 217 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 276
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 277 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 333
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 334 -----------------------------------------LSGLAQRVCIQRKPLRFCA 352
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEIT+L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 353 ERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFS 412
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 413 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 470
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 170/229 (74%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 64 RKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 123
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FDA GRE PL G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 124 HDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVY 183
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ GN++TL+
Sbjct: 184 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQ 243
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 244 KTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 292
Score = 135 bits (341), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/96 (68%), Positives = 79/96 (82%), Gaps = 1/96 (1%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY A+PL+VTKL+YCSRTVPEIEKV+
Sbjct: 1 MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 60
Query: 508 EELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 61 EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 96
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 480 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 539
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 540 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 592
Score = 107 bits (268), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 69/99 (69%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR DKR KL
Sbjct: 611 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKL 669
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 670 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 708
>gi|297277341|ref|XP_002808245.1| PREDICTED: LOW QUALITY PROTEIN: TFIIH basal transcription factor
complex helicase subunit-like [Macaca mulatta]
Length = 739
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/418 (58%), Positives = 309/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FDA GRE PL G+Y++ L
Sbjct: 97 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 156
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 157 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 216
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARE
Sbjct: 217 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 276
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 277 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 333
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 334 -----------------------------------------LSGLAQRVCIQRKPLRFCA 352
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEIT+L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 353 ERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFS 412
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 413 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 470
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 170/229 (74%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 64 RKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 123
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FDA GRE PL G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 124 HDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVY 183
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ GN++TL+
Sbjct: 184 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQ 243
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 244 KTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 292
Score = 135 bits (341), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/96 (68%), Positives = 79/96 (82%), Gaps = 1/96 (1%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY A+PL+VTKL+YCSRTVPEIEKV+
Sbjct: 1 MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 60
Query: 508 EELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 61 EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 96
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 480 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 539
Query: 640 RKLLFIETQDALDSRSVSKER 660
KLLFIETQD ++ SV+ E+
Sbjct: 540 NKLLFIETQDGAET-SVALEK 559
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 69/99 (69%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR DKR KL
Sbjct: 614 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKL 672
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 673 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 711
>gi|402905923|ref|XP_003915757.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit [Papio anubis]
Length = 760
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/418 (58%), Positives = 309/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FDA GRE PL G+Y++ L
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARE
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 358 -----------------------------------------LSGLAQRVCIQRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEIT+L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 377 ERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 437 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 494
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 170/229 (74%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 88 RKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 147
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FDA GRE PL G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 148 HDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVY 207
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ GN++TL+
Sbjct: 208 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQ 267
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 268 KTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 316
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 564 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 616
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 69/99 (69%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR DKR KL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 694 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 732
>gi|15834617|ref|NP_000391.1| TFIIH basal transcription factor complex helicase XPD subunit
isoform 1 [Homo sapiens]
gi|119540|sp|P18074.1|ERCC2_HUMAN RecName: Full=TFIIH basal transcription factor complex helicase XPD
subunit; AltName: Full=Basic transcription factor 2 80
kDa subunit; Short=BTF2 p80; AltName: Full=CXPD;
AltName: Full=DNA excision repair protein ERCC-2;
AltName: Full=DNA repair protein complementing XP-D
cells; AltName: Full=TFIIH basal transcription factor
complex 80 kDa subunit; Short=TFIIH 80 kDa subunit;
Short=TFIIH p80; AltName: Full=Xeroderma pigmentosum
group D-complementing protein
gi|17939382|gb|AAL48323.1| ERCC2 [Homo sapiens]
gi|82568960|gb|AAI08256.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 2 [Homo sapiens]
Length = 760
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/418 (58%), Positives = 309/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FDA GRE PL G+Y++ L
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARE
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 358 -----------------------------------------LSGLAQRVCIQRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEIT+L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 377 ERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 437 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 494
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 170/229 (74%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 88 RKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 147
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FDA GRE PL G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 148 HDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVY 207
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ GN++TL+
Sbjct: 208 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQ 267
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 268 KTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 316
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 564 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 616
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 69/99 (69%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR DKR KL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 694 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 732
>gi|296645|emb|CAA36463.1| ercc2 gene product [Homo sapiens]
Length = 730
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/418 (58%), Positives = 309/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FDA GRE PL G+Y++ L
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARE
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 358 -----------------------------------------LSGLAQRVCIQRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEIT+L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 377 ERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 437 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 494
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 170/229 (74%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 88 RKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 147
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FDA GRE PL G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 148 HDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVY 207
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ GN++TL+
Sbjct: 208 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQ 267
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 268 KTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 316
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 564 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 616
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 67/97 (69%), Gaps = 6/97 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR DKR KL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTR 912
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF R
Sbjct: 694 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHR 730
>gi|307686333|dbj|BAJ21097.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 [synthetic construct]
Length = 760
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/418 (58%), Positives = 309/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FDA GRE PL G+Y++ L
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARE
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLP+E+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 301 TDAHLANPVLPNEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 358 -----------------------------------------LSGLAQRVCIQRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEIT+L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 377 ERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 437 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 494
Score = 266 bits (679), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 133/229 (58%), Positives = 170/229 (74%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 88 RKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 147
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FDA GRE PL G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 148 HDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVY 207
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ GN++TL+
Sbjct: 208 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQ 267
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLP+E+LQ
Sbjct: 268 KTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPNEVLQ 316
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 564 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 616
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 69/99 (69%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR DKR KL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 694 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 732
>gi|432891078|ref|XP_004075537.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like [Oryzias latipes]
Length = 665
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 252/419 (60%), Positives = 311/419 (74%), Gaps = 45/419 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS R GK VDG+CHSLT+S +R + + + PVC FYE+FDAVGR+ PL G+Y++ L
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQRHSNPDQPVCRFYEEFDAVGRQVPLPAGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K+ GR G CPY+LAR +I+HA IVVYSYHYLLDPKIA++VSKELA+ SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQT-LEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 179
NVC+DS+SV I RRT+++ IQT L+ + ++K+ D+AKLREEY RLVEGL++A AR
Sbjct: 241 NVCIDSMSVNITRRTLDRRFCLIQTELKRKILKIKDTDAAKLREEYRRLVEGLKEANVAR 300
Query: 180 ETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLK 239
ETDV LANPVLPDEILQE VPG+IRTAEHF+GFL+RF+EYLK+RLRV VVQES FLK
Sbjct: 301 ETDVYLANPVLPDEILQEAVPGSIRTAEHFLGFLRRFLEYLKSRLRVHHVVQESAPQFLK 360
Query: 240 DISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFC 299
D I KVCI+RKPLRFC
Sbjct: 361 D--------------------------------------------IFEKVCIDRKPLRFC 376
Query: 300 AERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYF 359
AERL SLLRTLEI ++ DFS++ +I++ ATLVS+Y+ GF II+EPF D+ PT+ NPVL+F
Sbjct: 377 AERLQSLLRTLEIADIADFSAVTLISNFATLVSTYSLGFTIIIEPFDDRTPTIANPVLHF 436
Query: 360 CCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D S+AIKPVF RFQ+VVITSGTLSPLD+YPKIL+F+PV M SF+MTLAR CL P++
Sbjct: 437 SCMDPSIAIKPVFQRFQSVVITSGTLSPLDIYPKILDFRPVTMASFTMTLARTCLCPLI 495
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 127/197 (64%), Positives = 158/197 (80%), Gaps = 1/197 (0%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS R GK VDG+CHSLT+S +R + + + PVC FYE+FDAVGR+ PL G+Y++ L
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQRHSNPDQPVCRFYEEFDAVGRQVPLPAGIYNLDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K+ GR G CPY+LAR +I+HA IVVYSYHYLLDPKIA++VSKELA+ SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQT-LEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
NVC+DS+SV I RRT+++ IQT L+ + ++K+ D+AKLREEY RLVEGL++A AR
Sbjct: 241 NVCIDSMSVNITRRTLDRRFCLIQTELKRKILKIKDTDAAKLREEYRRLVEGLKEANVAR 300
Query: 835 ETDVVLANPVLPDEILQ 851
ETDV LANPVLPDEILQ
Sbjct: 301 ETDVYLANPVLPDEILQ 317
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 86/120 (71%), Positives = 98/120 (81%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L I+ L V+FPY+YIYPEQY+YM+ELK+ LDAKGH +LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSE 542
A PLDVTKL+YCSRTVPEIEKVVEEL +L ++Y K E+ N L LSSRKNLCIH E
Sbjct: 61 KAFPLDVTKLIYCSRTVPEIEKVVEELRKLMEFYAKETGEVNNFLALALSSRKNLCIHPE 120
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 97/148 (65%), Gaps = 14/148 (9%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S FETR+D +VIRNYG LL++++ +VPDG+V FFTSY+Y+E++VASWY+QGI++N+Q+
Sbjct: 505 LSSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFTSYVYMENIVASWYEQGILENIQR 564
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAV 699
KL+FIETQDA ++ ++ +GR L S + R K E I DF F
Sbjct: 565 NKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA---RGKVSEGI---DFVHHF--- 615
Query: 700 GREAPL--APGVYSITK-LKEMGRELGL 724
GR + P VY+ ++ LKE +LGL
Sbjct: 616 GRAVIMFGVPYVYTQSRILKE--DQLGL 641
>gi|395854140|ref|XP_003799556.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit isoform 1 [Otolemur garnettii]
Length = 760
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 243/418 (58%), Positives = 308/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FDA GR+ PL G+Y++ L
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDTSLPHCRFYEEFDAHGRQVPLPAGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 181 KTLGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RR +++ GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARE
Sbjct: 241 NVCIDSMSVNLTRRILDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 358 -----------------------------------------LSGLAQRVCIQRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEIT+L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 377 ERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 437 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 494
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 132/229 (57%), Positives = 169/229 (73%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 88 RKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 147
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FDA GR+ PL G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 148 QDTSLPHCRFYEEFDAHGRQVPLPAGIYNLDDLKTLGRRQGWCPYFLARYSILHANVVVY 207
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RR +++ GN++TL+
Sbjct: 208 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRILDRCQGNLETLQ 267
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 268 KTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 316
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIIAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE+R+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 504 ISSKFESREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 564 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 616
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 69/99 (69%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR DKR KL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARVDKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 694 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 732
>gi|410982712|ref|XP_003997692.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit [Felis catus]
Length = 760
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 243/414 (58%), Positives = 304/414 (73%), Gaps = 44/414 (10%)
Query: 5 RDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMG 64
R GK VDG+CHSLT+S VR +++ ++P C FYE+FD GR+ PL G+Y++ LK +G
Sbjct: 125 RFGKDVDGKCHSLTASYVRAQYQQDPSLPHCRFYEEFDVHGRQVPLPAGIYNLDDLKALG 184
Query: 65 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 124
R G CPYFLAR +I+HA +VVYSYHYLLDPKIA +VSKELAR +VVVFDEAHNIDNVC+
Sbjct: 185 RRQGWCPYFLARYSILHANVVVYSYHYLLDPKIAELVSKELARKAVVVFDEAHNIDNVCI 244
Query: 125 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVV 184
DS+SV I RRT+++ GN++TL+ T+ +KE D +LREEY RLVEGLR+A +ARETD
Sbjct: 245 DSMSVNITRRTLDRCQGNLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARETDAH 304
Query: 185 LANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSK 244
LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 305 LANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF------- 357
Query: 245 PAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLA 304
L ++ +VCI+RKPLRFCAERL
Sbjct: 358 -------------------------------------LSGLAQRVCIQRKPLRFCAERLR 380
Query: 305 SLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDS 364
SLL TLEI +L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F C+D+
Sbjct: 381 SLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDA 440
Query: 365 SLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 441 SLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 494
Score = 265 bits (677), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 167/229 (72%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V R GK VDG+CHSLT+S VR +++
Sbjct: 88 RKLLHFYEKQEGEKLPFLGLALSSRKNLCIHPEVMPLRFGKDVDGKCHSLTASYVRAQYQ 147
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FD GR+ PL G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 148 QDPSLPHCRFYEEFDVHGRQVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVY 207
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA +VSKELAR +VVVFDEAHNIDNVC+DS+SV I RRT+++ GN++TL+
Sbjct: 208 SYHYLLDPKIAELVSKELARKAVVVFDEAHNIDNVCIDSMSVNITRRTLDRCQGNLETLQ 267
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LREEY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 268 KTVLRIKETDEQRLREEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 316
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L +Y K E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLHFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 564 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 616
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 70/99 (70%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 694 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 732
>gi|345785629|ref|XP_541562.3| PREDICTED: LOW QUALITY PROTEIN: TFIIH basal transcription factor
complex helicase XPD subunit [Canis lupus familiaris]
Length = 760
Score = 510 bits (1314), Expect = e-141, Method: Compositional matrix adjust.
Identities = 242/414 (58%), Positives = 304/414 (73%), Gaps = 44/414 (10%)
Query: 5 RDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMG 64
R GK VDG+CHSLT+S VR +++ ++P C FYE+FD GR+ PL G+Y++ LK +G
Sbjct: 125 RFGKDVDGKCHSLTASYVRAQYQQDSSLPHCRFYEEFDVHGRQVPLPAGIYNLDDLKALG 184
Query: 65 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 124
+ G CPYFLAR +I+HA +VVYSYHYLLDPKIA +VSKELAR +VVVFDEAHNIDNVC+
Sbjct: 185 QRQGWCPYFLARYSILHANVVVYSYHYLLDPKIAELVSKELARKAVVVFDEAHNIDNVCI 244
Query: 125 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVV 184
DS+SV I RRT+++ GN++TL+ T+ +KE D +LREEY RLVEGLR+A +ARETD
Sbjct: 245 DSMSVNITRRTLDRCQGNLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARETDAH 304
Query: 185 LANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSK 244
LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 305 LANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF------- 357
Query: 245 PAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLA 304
L ++ +VCI+RKPLRFCAERL
Sbjct: 358 -------------------------------------LSGLAQRVCIQRKPLRFCAERLR 380
Query: 305 SLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDS 364
SLL TLEI +L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F C+D+
Sbjct: 381 SLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDA 440
Query: 365 SLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 441 SLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 494
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 133/229 (58%), Positives = 167/229 (72%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V R GK VDG+CHSLT+S VR +++
Sbjct: 88 RKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVMPLRFGKDVDGKCHSLTASYVRAQYQ 147
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FD GR+ PL G+Y++ LK +G+ G CPYFLAR +I+HA +VVY
Sbjct: 148 QDSSLPHCRFYEEFDVHGRQVPLPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVY 207
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA +VSKELAR +VVVFDEAHNIDNVC+DS+SV I RRT+++ GN++TL+
Sbjct: 208 SYHYLLDPKIAELVSKELARKAVVVFDEAHNIDNVCIDSMSVNITRRTLDRCQGNLETLQ 267
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LREEY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 268 KTVLRIKETDEQRLREEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 316
Score = 172 bits (436), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 100/120 (83%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 564 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 616
Score = 105 bits (263), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 57/65 (87%)
Query: 850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQP 909
++GKTDYG+M+FADKRFAR+DKR KLP+WIQE+LTD NL+ +E VQ++K +LRQMAQP
Sbjct: 668 IRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQP 727
Query: 910 FTRED 914
F RED
Sbjct: 728 FHRED 732
>gi|431909160|gb|ELK12750.1| TFIIH basal transcription factor complex helicase subunit [Pteropus
alecto]
Length = 736
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 241/418 (57%), Positives = 306/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FD GR+ PL G+Y++ L
Sbjct: 97 VTPLRFGKDVDGKCHSLTASYVRAQYQQDHSLPHCRFYEEFDIHGRQVPLPAGIYNLDDL 156
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K MGR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 157 KAMGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 216
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARE
Sbjct: 217 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 276
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLR Q +VQESP F
Sbjct: 277 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRAQHMVQESPPAF--- 333
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 334 -----------------------------------------LSGLAQRVCIQRKPLRFCA 352
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEI +L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 353 ERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTITNPILHFS 412
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 413 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 470
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 127/225 (56%), Positives = 168/225 (74%)
Query: 627 SWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGEN 686
S+Y++ + LQ L ++ V+ R GK VDG+CHSLT+S VR +++ +
Sbjct: 68 SFYEKQEGEKLQFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQQDHS 127
Query: 687 IPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
+P C FYE+FD GR+ PL G+Y++ LK MGR G CPYFLAR +I+HA +VVYSYHY
Sbjct: 128 LPHCRFYEEFDIHGRQVPLPAGIYNLDDLKAMGRRQGWCPYFLARYSILHANVVVYSYHY 187
Query: 747 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLK 806
LLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ GN++TL+ T+
Sbjct: 188 LLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQKTVL 247
Query: 807 EMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
+KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 248 RIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 292
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/96 (68%), Positives = 79/96 (82%), Gaps = 1/96 (1%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M+ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY A+PL+VTKL+YCSRTVPEIEKV+
Sbjct: 1 MLELKRTLDAKGHGILEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 60
Query: 508 EELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
EEL +L +Y K E++ GL LSSRKNLCIH E
Sbjct: 61 EELRKLLSFYEKQEGEKLQFLGLALSSRKNLCIHPE 96
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/138 (46%), Positives = 89/138 (64%), Gaps = 11/138 (7%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 480 ITSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 539
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAV 699
KLLFIETQD ++ ++ +GR L S + R K E I DF F
Sbjct: 540 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGI---DFVHHF--- 590
Query: 700 GREAPL--APGVYSITKL 715
GR + P VY+ +++
Sbjct: 591 GRAVIMFGVPYVYTQSRI 608
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 69/99 (69%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRF +DKR KL
Sbjct: 611 ARL-EYLRDQFQIREKDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFTSADKRGKL 669
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+L+D+ NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 670 PRWIQEHLSDSNLNLTVDEGVQVAKYFLRQMAQPFHRED 708
>gi|146741362|dbj|BAF62336.1| DNA-repair protein complementing XP-D cells [Sus scrofa]
Length = 756
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 242/418 (57%), Positives = 306/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FD GR+ PL G+Y++ L
Sbjct: 117 VTPLRFGKDVDGKCHSLTASYVRAQYQQDPSLPHCRFYEEFDVHGRQVPLPAGIYNLDDL 176
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 177 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 236
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RR +++ GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARE
Sbjct: 237 NVCIDSMSVNLTRRMLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 296
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 297 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 353
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 354 -----------------------------------------LSGLAQRVCIQRKPLRFCA 372
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEI +L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NPVL+F
Sbjct: 373 ERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPVLHFS 432
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 433 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 490
Score = 263 bits (671), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 131/229 (57%), Positives = 168/229 (73%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 84 RKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 143
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FD GR+ PL G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 144 QDPSLPHCRFYEEFDVHGRQVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVY 203
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RR +++ GN++TL+
Sbjct: 204 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRMLDRCQGNLETLQ 263
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 264 KTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 312
Score = 169 bits (428), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 79/116 (68%), Positives = 97/116 (83%), Gaps = 1/116 (0%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
+D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY A+P
Sbjct: 1 VDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYP 60
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
L+VTKL+YCSRTVPEIEKV+EEL +L +Y K E++ GL LSSRKNLCIH E
Sbjct: 61 LEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPE 116
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VA+WY+QGI++N+Q+
Sbjct: 500 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVAAWYEQGILENIQR 559
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 560 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 612
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 70/99 (70%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 631 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 689
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 690 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 728
>gi|157168345|ref|NP_001096787.1| TFIIH basal transcription factor complex helicase XPD subunit [Bos
taurus]
gi|182645388|sp|A6QLJ0.1|ERCC2_BOVIN RecName: Full=TFIIH basal transcription factor complex helicase XPD
subunit; AltName: Full=CXPD; AltName: Full=DNA excision
repair protein ERCC-2; AltName: Full=DNA repair protein
complementing XP-D cells; AltName: Full=Xeroderma
pigmentosum group D-complementing protein
gi|151556394|gb|AAI47983.1| ERCC2 protein [Bos taurus]
gi|296477395|tpg|DAA19510.1| TPA: TFIIH basal transcription factor complex helicase subunit [Bos
taurus]
Length = 760
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 242/418 (57%), Positives = 308/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FD GR+ PL G+Y++ L
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 181 KAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ N++TL+ T+ +KE D +LREEY RLVEGLR+A +ARE
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQANLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+L+E VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 301 TDAHLANPVLPDEVLKEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 358 -----------------------------------------LSGLAQRVCIQRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEI++LTDFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 377 ERLRSLLYTLEISDLTDFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 437 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 494
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 131/229 (57%), Positives = 168/229 (73%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 88 RKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 147
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FD GR+ PL G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 148 RDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDLKAVGRRQGWCPYFLARYSILHANVVVY 207
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ N++TL+
Sbjct: 208 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQANLETLQ 267
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LREEY RLVEGLR+A +ARETD LANPVLPDE+L+
Sbjct: 268 KTVLRIKETDEQRLREEYRRLVEGLREASAARETDAHLANPVLPDEVLK 316
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L +Y K E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 564 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 616
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 70/99 (70%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 694 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 732
>gi|119936449|gb|ABM06129.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 protein [Bos taurus]
Length = 773
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 242/418 (57%), Positives = 308/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FD GR+ PL G+Y++ L
Sbjct: 134 VTPLRFGKDVDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDL 193
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 194 KAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 253
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ N++TL+ T+ +KE D +LREEY RLVEGLR+A +ARE
Sbjct: 254 NVCIDSMSVNLTRRTLDRCQANLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARE 313
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+L+E VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 314 TDAHLANPVLPDEVLKEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 370
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 371 -----------------------------------------LSGLAQRVCIQRKPLRFCA 389
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEI++LTDFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 390 ERLRSLLYTLEISDLTDFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFS 449
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 450 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 507
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 131/229 (57%), Positives = 168/229 (73%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 101 RKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 160
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FD GR+ PL G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 161 RDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDLKAVGRRQGWCPYFLARYSILHANVVVY 220
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ N++TL+
Sbjct: 221 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQANLETLQ 280
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LREEY RLVEGLR+A +ARETD LANPVLPDE+L+
Sbjct: 281 KTVLRIKETDEQRLREEYRRLVEGLREASAARETDAHLANPVLPDEVLK 329
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/121 (66%), Positives = 99/121 (81%), Gaps = 1/121 (0%)
Query: 423 AMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
A L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 13 ASRLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAY 72
Query: 483 MNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHS 541
A+PL+VTKL+YCSRTVPEIEKV+EEL +L +Y K E++ GL LSSRKNLCIH
Sbjct: 73 QRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHP 132
Query: 542 E 542
E
Sbjct: 133 E 133
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 517 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 576
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 577 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 629
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 70/99 (70%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 648 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 706
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 707 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 745
>gi|291414826|ref|XP_002723661.1| PREDICTED: excision repair cross-complementing rodent repair
deficiency, complementation group 2 protein [Oryctolagus
cuniculus]
Length = 713
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 241/418 (57%), Positives = 307/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S +R +++ + P C FYE+FDA GR+ PL G+Y++ L
Sbjct: 74 VTPLRFGKDVDGKCHSLTASYIRAQYQQDASRPHCRFYEEFDAHGRQVPLPAGIYNLDDL 133
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +G+ G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 134 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 193
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ GN++TL+ T++ +KE D +LR+EY RLVEGLR+A ARE
Sbjct: 194 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVQRIKETDEQRLRDEYRRLVEGLREASVARE 253
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +E++K RLRVQ VVQESP F
Sbjct: 254 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEFVKWRLRVQHVVQESPPAF--- 310
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 311 -----------------------------------------LSSLAQRVCIQRKPLRFCA 329
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEI +L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NPVL+F
Sbjct: 330 ERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPVLHFS 389
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 390 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 447
Score = 266 bits (680), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 140/266 (52%), Positives = 185/266 (69%), Gaps = 25/266 (9%)
Query: 609 DGVVCFFT-SYLYLESV-----VASWYDQGIIDNLQKRKLL-FIETQD---------ALD 652
DG++ +F Y+Y E + D +I+ L RKLL F E Q+ AL
Sbjct: 6 DGLLVYFPYDYIYPEQFSYMLELKRTLDAKVIEEL--RKLLSFYEKQEGEKLPFLGLALS 63
Query: 653 SRS-------VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPL 705
SR V+ R GK VDG+CHSLT+S +R +++ + P C FYE+FDA GR+ PL
Sbjct: 64 SRKNLCIHPEVTPLRFGKDVDGKCHSLTASYIRAQYQQDASRPHCRFYEEFDAHGRQVPL 123
Query: 706 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 765
G+Y++ LK +G+ G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +V
Sbjct: 124 PAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAV 183
Query: 766 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVE 825
VVFDEAHNIDNVC+DS+SV + RRT+++ GN++TL+ T++ +KE D +LR+EY RLVE
Sbjct: 184 VVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQKTVQRIKETDEQRLRDEYRRLVE 243
Query: 826 GLRDAQSARETDVVLANPVLPDEILQ 851
GLR+A ARETD LANPVLPDE+LQ
Sbjct: 244 GLREASVARETDAHLANPVLPDEVLQ 269
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE+R+D++VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 457 ISSKFESREDMAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 516
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 517 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 569
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 70/99 (70%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 588 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 646
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 647 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 685
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 56/120 (46%), Gaps = 48/120 (40%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM+ELK+ LDA
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDA-------------------------- 34
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
KV+EEL +L +Y K E++ GL LSSRKNLCIH E
Sbjct: 35 ---------------------KVIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPE 73
>gi|320166669|gb|EFW43568.1| nucleotide excision repair protein [Capsaspora owczarzaki ATCC
30864]
Length = 747
Score = 507 bits (1305), Expect = e-140, Method: Compositional matrix adjust.
Identities = 240/418 (57%), Positives = 306/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKERDGK+VD +C LT+S VR R + + +C FYE+FD GREA L GVY++ +L
Sbjct: 96 VSKERDGKLVDSKCRELTASWVRTRAENNSEVELCSFYEEFDRSGREALLPAGVYTLDEL 155
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G+ CPY+LAR I A ++VYSYHYLLDPKIAN+VSKELA+ SVVVFDEAHNID
Sbjct: 156 RAFGQRQNWCPYYLARHMISFANVIVYSYHYLLDPKIANLVSKELAKESVVVFDEAHNID 215
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++S+SV I +RT++ + N+ L T+ E+K+ D+A+L++EY RLV+GLR+A +ARE
Sbjct: 216 NVCIESMSVEITKRTLDNSTRNLNALASTISEIKQTDTARLQDEYTRLVQGLREANTARE 275
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD+VLANPVLPDEI+QE VPG IR AEHFV FL+RF+EYLK RLRVQ VV E+P +FL+D
Sbjct: 276 TDLVLANPVLPDEIMQEAVPGTIRRAEHFVAFLRRFVEYLKNRLRVQHVVAENPTSFLQD 335
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ Q VQ I+RKPLRFCA
Sbjct: 336 L-----------------------------YQAVQ---------------IDRKPLRFCA 351
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ DFS+LV + + ATLVS+Y KGF++I+EPF D+ PT+PNPVLYF
Sbjct: 352 ERLGSLVRTLELPNMDDFSALVTVANFATLVSTYAKGFSLIIEPFDDRTPTIPNPVLYFS 411
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKP+FDRFQTVVITSGTLSP++MYPKILNFQPV SF+MTL+R C+ P++
Sbjct: 412 CMDASLAIKPIFDRFQTVVITSGTLSPIEMYPKILNFQPVTAQSFTMTLSRNCVCPVI 469
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 116/196 (59%), Positives = 153/196 (78%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKERDGK+VD +C LT+S VR R + + +C FYE+FD GREA L GVY++ +L
Sbjct: 96 VSKERDGKLVDSKCRELTASWVRTRAENNSEVELCSFYEEFDRSGREALLPAGVYTLDEL 155
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
+ G+ CPY+LAR I A ++VYSYHYLLDPKIAN+VSKELA+ SVVVFDEAHNID
Sbjct: 156 RAFGQRQNWCPYYLARHMISFANVIVYSYHYLLDPKIANLVSKELAKESVVVFDEAHNID 215
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC++S+SV I +RT++ + N+ L T+ E+K+ D+A+L++EY RLV+GLR+A +ARE
Sbjct: 216 NVCIESMSVEITKRTLDNSTRNLNALASTISEIKQTDTARLQDEYTRLVQGLREANTARE 275
Query: 836 TDVVLANPVLPDEILQ 851
TD+VLANPVLPDEI+Q
Sbjct: 276 TDLVLANPVLPDEIMQ 291
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 70/77 (90%)
Query: 850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQP 909
++GK+DYG+MIFADKRFAR DK+ KLPKWIQ+Y+TD+L NLS +EAVQ++KR+LR MAQP
Sbjct: 643 IRGKSDYGMMIFADKRFARLDKKGKLPKWIQQYMTDDLCNLSVDEAVQVAKRFLRNMAQP 702
Query: 910 FTREDMLGVALLSLDQL 926
F ++D LG++LL+L+Q+
Sbjct: 703 FNKDDQLGLSLLTLEQV 719
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 56/102 (54%), Positives = 76/102 (74%), Gaps = 2/102 (1%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M+ELK+++DAKGHC+LEMPSGTGKT SLLSLI+++ +P + KL+YCSRTVPEIEKV+
Sbjct: 1 MLELKRSIDAKGHCVLEMPSGTGKTISLLSLIISHQMVNP-QMGKLIYCSRTVPEIEKVL 59
Query: 508 EELARLFDYY-IKHNEEINMTGLVLSSRKNLCIHSEFETRDD 548
+E+ +L Y + + + GL LS+RKN+CIH E D
Sbjct: 60 DEMTKLVAYIESETGQRLKFLGLGLSARKNMCIHPEVSKERD 101
Score = 106 bits (265), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 77/124 (62%), Gaps = 4/124 (3%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
CV P +V + + + S F+ RDD +V+RNYG LLVD++ VVPDG+VCFF SY Y+ES
Sbjct: 464 CVCP-VIVTRGSDQVAVSSRFQVRDDPAVVRNYGSLLVDLSAVVPDGLVCFFPSYTYMES 522
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKA 683
+VA W++QG++ NL + KL+FIETQD ++ +GR L S + R K
Sbjct: 523 IVAKWHEQGVLTNLLRNKLVFIETQDGAETSIALDNYQKACENGRGAVLLSVA---RGKV 579
Query: 684 GENI 687
E I
Sbjct: 580 SEGI 583
>gi|346986337|ref|NP_001231320.1| TFIIH basal transcription factor complex helicase XPD subunit
[Cricetulus griseus]
gi|2495145|sp|Q60452.1|ERCC2_CRIGR RecName: Full=TFIIH basal transcription factor complex helicase XPD
subunit; AltName: Full=CXPD; AltName: Full=DNA excision
repair protein ERCC-2; AltName: Full=DNA repair protein
complementing XP-D cells; AltName: Full=Xeroderma
pigmentosum group D-complementing protein
gi|604908|gb|AAC13749.1| nucleotide excision repair protein [Cricetulus griseus]
Length = 760
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 241/418 (57%), Positives = 306/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FDA GR+ PL G+Y++ L
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDAHGRQVPLPAGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +G+ G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ N+ TL+ T+ +KE D +LR+EY RLVEGLR+A +ARE
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 358 -----------------------------------------LSGLAQRVCIQRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEI +L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 377 ERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 437 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 494
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 131/229 (57%), Positives = 168/229 (73%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 88 RKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 147
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FDA GR+ PL G+Y++ LK +G+ G CPYFLAR +I+HA +VVY
Sbjct: 148 QDASLPHCRFYEEFDAHGRQVPLPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVY 207
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ N+ TL+
Sbjct: 208 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSNLDTLQ 267
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 268 KTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 316
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 98/120 (81%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LIVAY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A PL+VTKL+YCSRTVPEIEKV+EEL +L +Y + E++ GL LSSRKNLCIH E
Sbjct: 61 RAFPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 564 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 616
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 71/99 (71%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD+ NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 694 PRWIQEHLTDSNLNLTVDEGVQVAKYFLRQMAQPFHRED 732
>gi|289802977|ref|NP_001166280.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 [Rattus norvegicus]
gi|149056774|gb|EDM08205.1| rCG54110 [Rattus norvegicus]
Length = 760
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 240/418 (57%), Positives = 305/418 (72%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FD GR+ PL G+Y++ L
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDTHGRQVPLPAGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +G+ G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ N+ TL+ T+ +KE D +LR+EY RLVEGLR+A +ARE
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 358 -----------------------------------------LSGLAQRVCIQRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEI +L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 377 ERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTITNPILHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 437 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 494
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 130/229 (56%), Positives = 167/229 (72%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 88 RKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 147
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FD GR+ PL G+Y++ LK +G+ G CPYFLAR +I+HA +VVY
Sbjct: 148 QDASLPHCRFYEEFDTHGRQVPLPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVY 207
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ N+ TL+
Sbjct: 208 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSNLDTLQ 267
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 268 KTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 316
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LIVAY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L +Y + E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 564 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 616
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 71/99 (71%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD+ NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 694 PRWIQEHLTDSNLNLTVDEGVQVAKYFLRQMAQPFHRED 732
>gi|348557833|ref|XP_003464723.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit [Cavia porcellus]
Length = 760
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 241/418 (57%), Positives = 305/418 (72%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FDA GR+ PL G+Y++ L
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDTSMPHCRFYEEFDAHGRQVPLPAGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +G+ G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ N+ TL+ T+ +KE D +LR+EY RLVEGLR+A ARE
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQANLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASVARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +E++K RLRVQ VVQESP F
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEFVKWRLRVQHVVQESPPAF--- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 358 -----------------------------------------LSSLAQRVCIQRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEI +L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NPVL+F
Sbjct: 377 ERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPVLHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 437 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 494
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 131/229 (57%), Positives = 167/229 (72%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 88 RKLLSFYEKQEGEKLSFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 147
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FDA GR+ PL G+Y++ LK +G+ G CPYFLAR +I+HA +VVY
Sbjct: 148 QDTSMPHCRFYEEFDAHGRQVPLPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVY 207
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ N+ TL+
Sbjct: 208 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQANLDTLQ 267
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A ARETD LANPVLPDE+LQ
Sbjct: 268 KTVLRIKETDEQRLRDEYRRLVEGLREASVARETDAHLANPVLPDEVLQ 316
Score = 172 bits (437), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 100/120 (83%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L +Y K E+++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLSFLGLALSSRKNLCIHPE 120
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 564 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 616
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 70/99 (70%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF +ED
Sbjct: 694 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHQED 732
>gi|2114484|gb|AAB58296.1| DNA helicase [Mus musculus]
Length = 760
Score = 504 bits (1297), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/418 (57%), Positives = 304/418 (72%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FD GR+ PL G+Y++ L
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDIHGRQMPLPAGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +G+ G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ N+ TL+ T+ +KE D +LR+EY RLVEGLR+A ARE
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASVARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 358 -----------------------------------------LSGLAQRVCIQRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEI +L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NPVL+F
Sbjct: 377 ERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPVLHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 437 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 494
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 130/229 (56%), Positives = 166/229 (72%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 88 RKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 147
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FD GR+ PL G+Y++ LK +G+ G CPYFLAR +I+HA +VVY
Sbjct: 148 QDASLPHCRFYEEFDIHGRQMPLPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVY 207
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ N+ TL+
Sbjct: 208 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSNLDTLQ 267
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A ARETD LANPVLPDE+LQ
Sbjct: 268 KTVLRIKETDEQRLRDEYRRLVEGLREASVARETDAHLANPVLPDEVLQ 316
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LIVAY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L +Y + E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 564 NKLLFIETQDGAETSVALEKYQEACENGRGAVLLSVA---RGKVSEGIDFVHHYGR 616
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 71/99 (71%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD+ NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 694 PRWIQEHLTDSNLNLTVDEGVQVAKYFLRQMAQPFHRED 732
>gi|31542614|ref|NP_031975.2| TFIIH basal transcription factor complex helicase XPD subunit [Mus
musculus]
gi|341940664|sp|O08811.2|ERCC2_MOUSE RecName: Full=TFIIH basal transcription factor complex helicase XPD
subunit; AltName: Full=CXPD; AltName: Full=DNA excision
repair protein ERCC-2; AltName: Full=DNA repair protein
complementing XP-D cells; AltName: Full=Xeroderma
pigmentosum group D-complementing protein
gi|26349935|dbj|BAC38607.1| unnamed protein product [Mus musculus]
gi|148691193|gb|EDL23140.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 [Mus musculus]
Length = 760
Score = 504 bits (1297), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/418 (57%), Positives = 304/418 (72%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FD GR+ PL G+Y++ L
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDIHGRQMPLPAGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +G+ G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ N+ TL+ T+ +KE D +LR+EY RLVEGLR+A ARE
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASVARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 358 -----------------------------------------LSGLAQRVCIQRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEI +L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NPVL+F
Sbjct: 377 ERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPVLHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 437 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 494
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 130/229 (56%), Positives = 166/229 (72%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 88 RKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 147
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FD GR+ PL G+Y++ LK +G+ G CPYFLAR +I+HA +VVY
Sbjct: 148 QDASLPHCRFYEEFDIHGRQMPLPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVY 207
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ N+ TL+
Sbjct: 208 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSNLDTLQ 267
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A ARETD LANPVLPDE+LQ
Sbjct: 268 KTVLRIKETDEQRLRDEYRRLVEGLREASVARETDAHLANPVLPDEVLQ 316
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LIVAY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L +Y + E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 564 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 616
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 71/99 (71%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD+ NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 694 PRWIQEHLTDSNLNLTVDEGVQVAKYFLRQMAQPFHRED 732
>gi|449664165|ref|XP_002163452.2| PREDICTED: LOW QUALITY PROTEIN: TFIIH basal transcription factor
complex helicase XPD subunit-like [Hydra magnipapillata]
Length = 759
Score = 504 bits (1297), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/418 (56%), Positives = 303/418 (72%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +DGK VDG+CH+LT+S VR R++A + PVC FYE FD+ GRE PL G+Y++ L
Sbjct: 121 VKNLKDGKQVDGKCHTLTASFVRTRYQADKQTPVCQFYENFDSFGREEPLPSGIYNLEDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K+ G E+G CPYF+AR AI A IVVYSYHYLLDPKIA++VSK +SS VVFDEAHNID
Sbjct: 181 KQYGEEIGCCPYFMARHAISLANIVVYSYHYLLDPKIADLVSKSFPKSSAVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS++V INRRT++K NI L ++ +K D+ KL EY RLV+GLR+AQ ARE
Sbjct: 241 NVCIDSMTVHINRRTLDKCHSNIDKLAEHVQRIKMTDAKKLNGEYERLVQGLREAQEARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD L NPVLPD +L+E VPGNIR AEHF+ F++RF+EYLKTRLR+Q VV E+P +F
Sbjct: 301 TDQYLGNPVLPDAVLEEAVPGNIRQAEHFIAFMRRFVEYLKTRLRIQHVVSETPPSF--- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L+ I +VCIERKPLRFC+
Sbjct: 358 -----------------------------------------LQHIHQQVCIERKPLRFCS 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLE+ ++TD+S L ++ + ATLVS+Y+KGF +I+EPF D+ PT+PNP+++FC
Sbjct: 377 ERLRSLLNTLELPDITDYSGLSLVANFATLVSTYSKGFVLIIEPFDDQTPTIPNPIIHFC 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+S+AIKPVF+RFQ+VVITSGTLSP+DMYPK+L+FQPV M +F+MTLAR C+LP++
Sbjct: 437 CLDASVAIKPVFERFQSVVITSGTLSPVDMYPKLLDFQPVNMSTFTMTLARQCVLPII 494
Score = 253 bits (646), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 117/196 (59%), Positives = 147/196 (75%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
V +DGK VDG+CH+LT+S VR R++A + PVC FYE FD+ GRE PL G+Y++ L
Sbjct: 121 VKNLKDGKQVDGKCHTLTASFVRTRYQADKQTPVCQFYENFDSFGREEPLPSGIYNLEDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K+ G E+G CPYF+AR AI A IVVYSYHYLLDPKIA++VSK +SS VVFDEAHNID
Sbjct: 181 KQYGEEIGCCPYFMARHAISLANIVVYSYHYLLDPKIADLVSKSFPKSSAVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS++V INRRT++K NI L ++ +K D+ KL EY RLV+GLR+AQ ARE
Sbjct: 241 NVCIDSMTVHINRRTLDKCHSNIDKLAEHVQRIKMTDAKKLNGEYERLVQGLREAQEARE 300
Query: 836 TDVVLANPVLPDEILQ 851
TD L NPVLPD +L+
Sbjct: 301 TDQYLGNPVLPDAVLE 316
Score = 159 bits (403), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 77/126 (61%), Positives = 94/126 (74%), Gaps = 1/126 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L ID L V FP+++IYPEQY+YM+ELK+ LDAKGHCLLEMPSGTGKT SL+SLIVAY+
Sbjct: 1 MKLNIDGLLVLFPHDFIYPEQYSYMLELKRTLDAKGHCLLEMPSGTGKTVSLISLIVAYI 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
P ++K +YCSRTVPEIEKV L ++Y K +++ M GL LSSRKNLCIH E
Sbjct: 61 KERPHHLSKFVYCSRTVPEIEKVYNFXXLLIEFYKKETGQDLKMVGLALSSRKNLCIHPE 120
Query: 543 FETRDD 548
+ D
Sbjct: 121 VKNLKD 126
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 83/115 (72%), Gaps = 6/115 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD + RE D + + + ++GKTDYGIM FADKRF+++DK+ KL
Sbjct: 635 ARL-EFLRDQFNIRENDFLTFDAMRHAAQCVGRAMRGKTDYGIMCFADKRFSKADKKGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKE 930
PKWIQE+L NLS +EAVQ+SKR+LRQMAQPF+ ED LG++LL++DQ+ +E
Sbjct: 694 PKWIQEHLKPCNCNLSIDEAVQVSKRFLRQMAQPFSHEDQLGMSLLTVDQVQSEE 748
Score = 112 bits (280), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 68/88 (77%), Gaps = 3/88 (3%)
Query: 564 CVVPDGVVCF-FTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLE 622
CV+P ++C + + S F+TRDD++VIRNYG LLV+++ VPDG+ CFF SYLY+E
Sbjct: 489 CVLP--IICSKGNDQVAISSSFQTRDDMAVIRNYGNLLVEMSASVPDGIACFFVSYLYME 546
Query: 623 SVVASWYDQGIIDNLQKRKLLFIETQDA 650
+VV+ W+DQGII N+QK KLLFIETQD
Sbjct: 547 TVVSIWHDQGIISNIQKNKLLFIETQDG 574
>gi|56118508|ref|NP_001008131.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 [Xenopus (Silurana) tropicalis]
gi|51703768|gb|AAH81339.1| ercc2 protein [Xenopus (Silurana) tropicalis]
Length = 760
Score = 504 bits (1297), Expect = e-139, Method: Compositional matrix adjust.
Identities = 242/418 (57%), Positives = 302/418 (72%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS R GK +DGRCHSLT+S VR + + + C F+E+FDA+GRE PL PG+Y++ L
Sbjct: 121 VSALRFGKEIDGRCHSLTASFVRSQKQRDPTVQTCRFFEEFDAIGRETPLPPGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ +GR+ G CPY+LAR A+ +VVYSYHYLLDPKIA++VS+EL++ SVVVFDEAHNID
Sbjct: 181 RTLGRQKGWCPYYLARHALGQCNVVVYSYHYLLDPKIADLVSRELSKKSVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV I RRT+E+ NI+TL ++++KE D KL+EEYA+LVEGLR+A ARE
Sbjct: 241 NVCIDSMSVTITRRTLERCQTNIETLNTAIEKIKETDEKKLKEEYAQLVEGLREASVARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TDV L+NPVLPDEILQE VPG IR A HF+GFL+R + Y+K+RLR V QE PA FL+D
Sbjct: 301 TDVYLSNPVLPDEILQEAVPGCIRNALHFLGFLRRLVGYIKSRLRAGHVTQEGPAAFLRD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ KVCIERKP+RFCA
Sbjct: 361 --------------------------------------------LYEKVCIERKPMRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL RTLEI ++TD S L +IT+ ATLVS+YTKGF II+EPF D+ P++ NPVL+F
Sbjct: 377 ERLRSLTRTLEIADITDLSPLTLITNFATLVSTYTKGFMIIIEPFEDRTPSISNPVLHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSSLAIKPVF RFQ+V+ITSGTLSPLD+YPKIL+F+PV M +F+MTLAR CL PMV
Sbjct: 437 CLDSSLAIKPVFQRFQSVIITSGTLSPLDIYPKILDFRPVTMATFTMTLARVCLCPMV 494
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 120/196 (61%), Positives = 155/196 (79%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS R GK +DGRCHSLT+S VR + + + C F+E+FDA+GRE PL PG+Y++ L
Sbjct: 121 VSALRFGKEIDGRCHSLTASFVRSQKQRDPTVQTCRFFEEFDAIGRETPLPPGIYNLDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
+ +GR+ G CPY+LAR A+ +VVYSYHYLLDPKIA++VS+EL++ SVVVFDEAHNID
Sbjct: 181 RTLGRQKGWCPYYLARHALGQCNVVVYSYHYLLDPKIADLVSRELSKKSVVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV I RRT+E+ NI+TL ++++KE D KL+EEYA+LVEGLR+A ARE
Sbjct: 241 NVCIDSMSVTITRRTLERCQTNIETLNTAIEKIKETDEKKLKEEYAQLVEGLREASVARE 300
Query: 836 TDVVLANPVLPDEILQ 851
TDV L+NPVLPDEILQ
Sbjct: 301 TDVYLSNPVLPDEILQ 316
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/120 (68%), Positives = 97/120 (80%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L ID L V+FPYEYIYPEQY+YM+ELK+ LDAKGH +LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKLNIDGLLVYFPYEYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY-YIKHNEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKVVEEL +L +Y + +N L LSSR+NLC++ E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVVEELRKLIEYTQAQTGGTLNFMALALSSRRNLCVNPE 120
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/122 (51%), Positives = 85/122 (69%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL + LRD RE D + + + ++GKTDYGIM+FADKR+ARSDKR KL
Sbjct: 635 ARL-QFLRDQFHLRENDFLTFDAMRHAAQCVGRAIRGKTDYGIMLFADKRYARSDKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
P WIQE+LTD NL+ +E+V L++ +LRQMAQPF RED LG++LL+L+QL +E +
Sbjct: 694 PLWIQEHLTDANLNLTLDESVHLARHFLRQMAQPFRREDQLGLSLLTLEQLQSEEMLQKI 753
Query: 936 EE 937
+E
Sbjct: 754 QE 755
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 80/116 (68%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+D++V+RNYG LL++++ VVPDG+V FFTSYLY+E++VASWY+QGI++N+Q+
Sbjct: 504 MSSKFETREDLAVMRNYGNLLLEMSAVVPDGIVGFFTSYLYMENIVASWYEQGILENIQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KL+FIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 564 NKLIFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 616
>gi|74219327|dbj|BAE26794.1| unnamed protein product [Mus musculus]
Length = 760
Score = 504 bits (1297), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/418 (57%), Positives = 304/418 (72%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FD GR+ PL G+Y++ L
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDIHGRQMPLPAGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +G+ G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ N+ TL+ T+ +KE D +LR+EY RLVEGLR+A ARE
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASVARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 358 -----------------------------------------LSGLAQRVCIQRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEI +L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NPVL+F
Sbjct: 377 ERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPVLHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 437 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 494
Score = 259 bits (662), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 130/231 (56%), Positives = 168/231 (72%), Gaps = 17/231 (7%)
Query: 638 QKRKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDR 680
++RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +
Sbjct: 86 ERRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQ 145
Query: 681 HKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIV 740
++ ++P C FYE+FD GR+ PL G+Y++ LK +G+ G CPYFLAR +I+HA +V
Sbjct: 146 YQQDASLPHCRFYEEFDIHGRQMPLPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVV 205
Query: 741 VYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 800
VYSYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ N+ T
Sbjct: 206 VYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSNLDT 265
Query: 801 LEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
L+ T+ +KE D +LR+EY RLVEGLR+A ARETD LANPVLPDE+LQ
Sbjct: 266 LQKTVLRIKETDEQRLRDEYRRLVEGLREASVARETDAHLANPVLPDEVLQ 316
Score = 169 bits (428), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 80/120 (66%), Positives = 98/120 (81%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LIVAY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EE +L +Y + E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEERRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 564 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 616
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 71/99 (71%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD+ NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 694 PRWIQEHLTDSNLNLTVDEGVQVAKYFLRQMAQPFHRED 732
>gi|334328785|ref|XP_003341121.1| PREDICTED: LOW QUALITY PROTEIN: TFIIH basal transcription factor
complex helicase XPD subunit-like [Monodelphis
domestica]
Length = 807
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 238/418 (56%), Positives = 307/418 (73%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR + + ++P C FYE+FDA GR+ P+ G+Y++ L
Sbjct: 168 VTPLRFGKDVDGKCHSLTASYVRAQRQQDSSVPHCRFYEEFDAQGRQMPIPWGIYNLDDL 227
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K GR+ G CPYFLAR +I+HA ++VYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 228 KAFGRQKGWCPYFLARYSILHANVIVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 287
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ N++TL+ T+ ++KE D +LREEY RLVEGLR+A ARE
Sbjct: 288 NVCIDSMSVNLTRRTLDRCQNNLETLQRTVHKIKETDEKRLREEYRRLVEGLREASVARE 347
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLR Q VVQESP F
Sbjct: 348 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRTQHVVQESPPAF--- 404
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 405 -----------------------------------------LGGLAHRVCIQRKPLRFCA 423
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEI +L DFS L ++++ ATLVS+Y++GF II+EPF ++ PT+ NPVL+F
Sbjct: 424 ERLRSLLHTLEIADLADFSPLTLLSNFATLVSTYSRGFTIIIEPFDERTPTIANPVLHFS 483
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPL++YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 484 CMDASLAIKPVFERFQSVIITSGTLSPLEIYPKILDFHPVTMATFTMTLARVCLCPMI 541
Score = 262 bits (669), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 120/196 (61%), Positives = 156/196 (79%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
V+ R GK VDG+CHSLT+S VR + + ++P C FYE+FDA GR+ P+ G+Y++ L
Sbjct: 168 VTPLRFGKDVDGKCHSLTASYVRAQRQQDSSVPHCRFYEEFDAQGRQMPIPWGIYNLDDL 227
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K GR+ G CPYFLAR +I+HA ++VYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 228 KAFGRQKGWCPYFLARYSILHANVIVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 287
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+DS+SV + RRT+++ N++TL+ T+ ++KE D +LREEY RLVEGLR+A ARE
Sbjct: 288 NVCIDSMSVNLTRRTLDRCQNNLETLQRTVHKIKETDEKRLREEYRRLVEGLREASVARE 347
Query: 836 TDVVLANPVLPDEILQ 851
TD LANPVLPDE+LQ
Sbjct: 348 TDAHLANPVLPDEVLQ 363
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/130 (63%), Positives = 101/130 (77%), Gaps = 3/130 (2%)
Query: 414 LLPMVRENYAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTT 473
LP+V A+ +D L V FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT
Sbjct: 40 FLPLVGTQQALN--VDGLLVHFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTI 97
Query: 474 SLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLS 532
SLL+LIVAY HPL+VTKL+YCSRTVPEIEKV+EEL +L + + K E++ GL LS
Sbjct: 98 SLLALIVAYQRVHPLEVTKLIYCSRTVPEIEKVIEELRKLMNSFEKQEGEKVPFLGLALS 157
Query: 533 SRKNLCIHSE 542
SRKNLCIH E
Sbjct: 158 SRKNLCIHPE 167
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VA+WY+QGI++N+Q+
Sbjct: 551 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVAAWYEQGILENIQR 610
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 611 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 663
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 70/99 (70%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 682 ARL-EFLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 740
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 741 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 779
>gi|21961619|gb|AAH34517.1| Ercc2 protein [Mus musculus]
Length = 739
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/418 (57%), Positives = 303/418 (72%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FD GR+ PL G+Y++ L
Sbjct: 100 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDIHGRQMPLPAGIYNLDDL 159
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +G G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 160 KALGHRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 219
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ N+ TL+ T+ +KE D +LR+EY RLVEGLR+A ARE
Sbjct: 220 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASVARE 279
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 280 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 336
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 337 -----------------------------------------LSGLAQRVCIQRKPLRFCA 355
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEI +L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NPVL+F
Sbjct: 356 ERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPVLHFS 415
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 416 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 473
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 133/238 (55%), Positives = 170/238 (71%), Gaps = 19/238 (7%)
Query: 631 QGIIDNLQKRKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLT 673
Q +I+ L RKLL F E Q+ AL SR V+ R GK VDG+CHSLT
Sbjct: 60 QRVIEEL--RKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLT 117
Query: 674 SSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQA 733
+S VR +++ ++P C FYE+FD GR+ PL G+Y++ LK +G G CPYFLAR +
Sbjct: 118 ASYVRAQYQQDASLPHCRFYEEFDIHGRQMPLPAGIYNLDDLKALGHRQGWCPYFLARYS 177
Query: 734 IIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEK 793
I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++
Sbjct: 178 ILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDR 237
Query: 794 AVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
N+ TL+ T+ +KE D +LR+EY RLVEGLR+A ARETD LANPVLPDE+LQ
Sbjct: 238 CQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASVARETDAHLANPVLPDEVLQ 295
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 80/120 (66%), Gaps = 22/120 (18%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LIVAY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAY- 59
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
++V+EEL +L +Y + E++ GL LSSRKNLCIH E
Sbjct: 60 --------------------QRVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 99
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 483 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 542
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 543 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 595
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 71/99 (71%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 614 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 672
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD+ NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 673 PRWIQEHLTDSNLNLTVDEGVQVAKYFLRQMAQPFHRED 711
>gi|351706985|gb|EHB09904.1| TFIIH basal transcription factor complex helicase subunit, partial
[Heterocephalus glaber]
Length = 759
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/418 (56%), Positives = 304/418 (72%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FDA GR+ PL G+Y++ L
Sbjct: 120 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASMPHCRFYEEFDAHGRQVPLPTGIYNLDDL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +G+ G CPYFLAR +I+HA VY+YHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 180 KALGQRQGWCPYFLARYSILHANEGVYTYHYLLDPKIADLVSKELARKAVVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ N+ TL+ T+ +KE D +LR+EY RLVEGLR+A +ARE
Sbjct: 240 NVCIDSMSVNLTRRTLDRCQANLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +E++K RLRVQ VVQESP F
Sbjct: 300 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEFIKWRLRVQHVVQESPPAF--- 356
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 357 -----------------------------------------LSSLAQRVCIQRKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEI +L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 376 ERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFS 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 436 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 493
Score = 255 bits (652), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 129/229 (56%), Positives = 166/229 (72%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 87 RKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 146
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FDA GR+ PL G+Y++ LK +G+ G CPYFLAR +I+HA VY
Sbjct: 147 QDASMPHCRFYEEFDAHGRQVPLPTGIYNLDDLKALGQRQGWCPYFLARYSILHANEGVY 206
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
+YHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ N+ TL+
Sbjct: 207 TYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQANLDTLQ 266
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 267 KTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 315
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 80/118 (67%), Positives = 99/118 (83%), Gaps = 1/118 (0%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY A
Sbjct: 2 LNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQWA 61
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 62 YPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 119
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 503 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 562
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 563 NKLLFIETQDGAETSVALEKYQEACENGRGPILLSVA---RGKVSEGIDFVHHYGR 615
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 70/99 (70%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 634 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 692
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 693 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 731
>gi|338710190|ref|XP_001500524.3| PREDICTED: LOW QUALITY PROTEIN: TFIIH basal transcription factor
complex helicase XPD subunit-like [Equus caballus]
Length = 785
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 241/418 (57%), Positives = 303/418 (72%), Gaps = 47/418 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +H+ ++P C FYE+FD GR+ PL G+Y++ L
Sbjct: 149 VTPLRFGKDVDGKCHSLTASYVRAQHQQDASLPHCRFYEEFDTHGRQVPLPSGIYNLDDL 208
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 209 KAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 268
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV I RRT+++ GN++TL+ K + AD +LR+EY RLVEGLR+A +ARE
Sbjct: 269 NVCIDSMSVTITRRTLDRCQGNLETLQ---KTVLRADEQRLRDEYRRLVEGLREASAARE 325
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 326 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKXRLRVQHVVQESPPAF--- 382
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+ K LRFCA
Sbjct: 383 -----------------------------------------LSGLAQRVCIQYKILRFCA 401
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEI +L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 402 ERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFS 461
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 462 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 519
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 133/229 (58%), Positives = 167/229 (72%), Gaps = 20/229 (8%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +H+
Sbjct: 116 RKLLNFYEKQEGEKLQFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQHQ 175
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FD GR+ PL G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 176 QDASLPHCRFYEEFDTHGRQVPLPSGIYNLDDLKAVGRRQGWCPYFLARYSILHANVVVY 235
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV I RRT+++ GN++TL+
Sbjct: 236 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVTITRRTLDRCQGNLETLQ 295
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
K + AD +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 296 ---KTVLRADEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 341
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/118 (67%), Positives = 99/118 (83%), Gaps = 1/118 (0%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY A
Sbjct: 31 LNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRA 90
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 91 YPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLQFLGLALSSRKNLCIHPE 148
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 529 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 588
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 589 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 641
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 70/99 (70%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+MIFADKRFAR+DKR KL
Sbjct: 660 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMIFADKRFARADKRGKL 718
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 719 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 757
>gi|427782715|gb|JAA56809.1| Putative excision repair cross-complementing rodent repair
deficiency complementation group 2 [Rhipicephalus
pulchellus]
Length = 718
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 238/418 (56%), Positives = 307/418 (73%), Gaps = 45/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS ERDG++VDGRC SLT+S R + E C F+E FD+ GR+ PL G+YS+ L
Sbjct: 80 VSLERDGRVVDGRCFSLTASYRRAQATDPET-QCCTFFENFDSQGRDIPLPTGIYSVDDL 138
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE GRE LCPYF+ARQA+++AK+VVYSYHYLLDPKIA VVSKE++R++VV+FDEAHNID
Sbjct: 139 KEYGRERQLCPYFVARQAVLNAKVVVYSYHYLLDPKIAEVVSKEMSRNAVVIFDEAHNID 198
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++S+SVR+ +RTIE ++ NI L+ T+KE+KE D+ KLR EY +L+EGLR A+ ARE
Sbjct: 199 NVCIESMSVRLTKRTIEGSMENIDNLDHTIKELKEQDAEKLRTEYEQLLEGLRQAKEARE 258
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D++LANPVLPDE+L+E VPGNIR AEHFV FL+R +EY+K R+R Q +VQESPA FLKD
Sbjct: 259 ADLILANPVLPDEVLEEAVPGNIRLAEHFVSFLRRLVEYVKMRMRAQHMVQESPAAFLKD 318
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
I KVC+ERKPLRF A
Sbjct: 319 --------------------------------------------ILQKVCLERKPLRFSA 334
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLLRTLE+ + T+FS LV + H A+LVS+YTKGF IIVEP+ +++P VPNPV+
Sbjct: 335 ERLRSLLRTLEVPDPTNFSPLVRLCHFASLVSTYTKGFTIIVEPYDERSPGVPNPVINLS 394
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SL+IKPVF+RFQ+V+ITSGTLSP++MYPKIL+F+PV+ S S+TLARP + P++
Sbjct: 395 CMDASLSIKPVFNRFQSVIITSGTLSPVEMYPKILDFRPVVSASLSITLARPSICPLI 452
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 127/215 (59%), Positives = 164/215 (76%), Gaps = 8/215 (3%)
Query: 637 LQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKF 696
L RK L I Q VS ERDG++VDGRC SLT+S R + E C F+E F
Sbjct: 68 LTSRKNLCIHPQ-------VSLERDGRVVDGRCFSLTASYRRAQATDPET-QCCTFFENF 119
Query: 697 DAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVV 756
D+ GR+ PL G+YS+ LKE GRE LCPYF+ARQA+++AK+VVYSYHYLLDPKIA VV
Sbjct: 120 DSQGRDIPLPTGIYSVDDLKEYGRERQLCPYFVARQAVLNAKVVVYSYHYLLDPKIAEVV 179
Query: 757 SKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKL 816
SKE++R++VV+FDEAHNIDNVC++S+SVR+ +RTIE ++ NI L+ T+KE+KE D+ KL
Sbjct: 180 SKEMSRNAVVIFDEAHNIDNVCIESMSVRLTKRTIEGSMENIDNLDHTIKELKEQDAEKL 239
Query: 817 REEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
R EY +L+EGLR A+ ARE D++LANPVLPDE+L+
Sbjct: 240 RTEYEQLLEGLRQAKEAREADLILANPVLPDEVLE 274
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/124 (58%), Positives = 89/124 (71%), Gaps = 6/124 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + L+GKTDYGIMIFADKRF+R DKRSKL
Sbjct: 593 ARL-EFLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRWDKRSKL 651
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
P+WIQE+L D+L NLSTEEA+Q+ KR+LRQMAQPFTRED LGV+LL+ +QL +E +
Sbjct: 652 PRWIQEHLQDSLCNLSTEEALQVVKRFLRQMAQPFTREDQLGVSLLTAEQLQSEEVKKKL 711
Query: 936 EEEV 939
E V
Sbjct: 712 ESRV 715
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 66/74 (89%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S FETR+++SV+RNYG LLV++A VPDG+VCFFTSY+YLESVVA+WY+QG++D LQ+
Sbjct: 462 LSSRFETREEVSVVRNYGALLVELASCVPDGLVCFFTSYVYLESVVAAWYEQGVLDQLQR 521
Query: 640 RKLLFIETQDALDS 653
RKLLF+ET DA ++
Sbjct: 522 RKLLFLETPDAAET 535
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Query: 465 MPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEE 523
MPSGTGKT +LLSLI+AY A+P ++KLLYCSRT+PEIEKVVEEL RL ++Y + E+
Sbjct: 1 MPSGTGKTVTLLSLILAYQKANPAMISKLLYCSRTLPEIEKVVEELRRLLEHYKRETGED 60
Query: 524 INMTGLVLSSRKNLCIHSEFETRDDISVI 552
+++ GL L+SRKNLCIH + D V+
Sbjct: 61 MDLLGLCLTSRKNLCIHPQVSLERDGRVV 89
>gi|240976653|ref|XP_002402458.1| DNA repair helicase rad3/xp-D, putative [Ixodes scapularis]
gi|215491179|gb|EEC00820.1| DNA repair helicase rad3/xp-D, putative [Ixodes scapularis]
Length = 758
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 241/419 (57%), Positives = 304/419 (72%), Gaps = 45/419 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSS-SVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 59
VSKERDG +VDG+C+ LT+ +R ++ + + FDA GRE L GVYS+
Sbjct: 122 VSKERDGHVVDGKCYLLTAPIYIRKSYRWDVVVTFRPVLQNFDAHGREFILPTGVYSLDD 181
Query: 60 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
LKE G E CPYF ARQA++HA +VVYSYHYLLDPKIA++VSKE+ RSSVV+FDEAHNI
Sbjct: 182 LKEYGMEHQYCPYFTARQAVLHATVVVYSYHYLLDPKIADLVSKEMTRSSVVIFDEAHNI 241
Query: 120 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 179
DNVC++S+SVRIN+RTI+ + NI TLE T+KE+KE D+ KL++EY RLVEGLRDA AR
Sbjct: 242 DNVCIESMSVRINKRTIDGSSENIDTLEQTIKELKEQDAEKLKDEYERLVEGLRDANVAR 301
Query: 180 ETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLK 239
ETD +LANP+LPDE+LQE VPGNIR AEHFV FL+R +EY+K RLRVQ VVQESPA FL+
Sbjct: 302 ETDAILANPILPDEVLQEAVPGNIRLAEHFVAFLRRLLEYVKMRLRVQHVVQESPAAFLR 361
Query: 240 DISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFC 299
D I KVCIERKPLRFC
Sbjct: 362 D--------------------------------------------ILHKVCIERKPLRFC 377
Query: 300 AERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYF 359
+ER+ S+++TLEI + T+FS+++ + ATLVS+YTKGF +IVEP+ D+ P VPNPVL
Sbjct: 378 SERMRSMVKTLEIADPTNFSAVIKLCSFATLVSTYTKGFTLIVEPYDDRTPGVPNPVLNL 437
Query: 360 CCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+S+AIKPVF+RFQ+V+ITSGTLSP+DMYPKIL+F+PVI SF++TLARP + PM+
Sbjct: 438 SCMDASIAIKPVFNRFQSVIITSGTLSPVDMYPKILDFRPVISASFTITLARPSICPMI 496
Score = 252 bits (643), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 122/197 (61%), Positives = 153/197 (77%), Gaps = 1/197 (0%)
Query: 656 VSKERDGKIVDGRCHSLTSS-SVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
VSKERDG +VDG+C+ LT+ +R ++ + + FDA GRE L GVYS+
Sbjct: 122 VSKERDGHVVDGKCYLLTAPIYIRKSYRWDVVVTFRPVLQNFDAHGREFILPTGVYSLDD 181
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
LKE G E CPYF ARQA++HA +VVYSYHYLLDPKIA++VSKE+ RSSVV+FDEAHNI
Sbjct: 182 LKEYGMEHQYCPYFTARQAVLHATVVVYSYHYLLDPKIADLVSKEMTRSSVVIFDEAHNI 241
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++S+SVRIN+RTI+ + NI TLE T+KE+KE D+ KL++EY RLVEGLRDA AR
Sbjct: 242 DNVCIESMSVRINKRTIDGSSENIDTLEQTIKELKEQDAEKLKDEYERLVEGLRDANVAR 301
Query: 835 ETDVVLANPVLPDEILQ 851
ETD +LANP+LPDE+LQ
Sbjct: 302 ETDAILANPILPDEVLQ 318
Score = 172 bits (437), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 85/133 (63%), Positives = 103/133 (77%), Gaps = 1/133 (0%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
+D L VFFPYEYIYPEQY+YM+ELK+ LDAKGH +LEMPSGTGKT +LLSLI++Y+ A+P
Sbjct: 6 VDGLTVFFPYEYIYPEQYSYMLELKQCLDAKGHGVLEMPSGTGKTVTLLSLILSYIKANP 65
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSEFETR 546
V+KL+YCSRT+PEIEKVVEEL RL +Y K E++N+ GL LSSRKNLCIH E
Sbjct: 66 AMVSKLIYCSRTLPEIEKVVEELRRLLKHYHKETGEDMNVLGLCLSSRKNLCIHPEVSKE 125
Query: 547 DDISVIRNYGQLL 559
D V+ LL
Sbjct: 126 RDGHVVDGKCYLL 138
Score = 132 bits (332), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 88/124 (70%), Gaps = 6/124 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + L+GKTDYGIMIFADKRFAR DKRSKL
Sbjct: 633 ARL-EYLRDQYQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFARWDKRSKL 691
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
P+WIQEYL D+L NLS EEA+Q+ +R+L+QMAQPFTRED LG++LL+ +QL ++ +
Sbjct: 692 PRWIQEYLKDSLCNLSIEEAMQVVRRFLKQMAQPFTREDQLGLSLLTAEQLESQDTKKKL 751
Query: 936 EEEV 939
E +
Sbjct: 752 ESRI 755
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 66/74 (89%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETRDDI+V+RNYG LLV++A VPDGVVCFFTSY+YLE VVASWY+QG+ID +Q+
Sbjct: 506 MTSKFETRDDIAVVRNYGTLLVEVASSVPDGVVCFFTSYMYLEGVVASWYEQGVIDQIQR 565
Query: 640 RKLLFIETQDALDS 653
RKLLFIETQDA ++
Sbjct: 566 RKLLFIETQDAAET 579
>gi|198412602|ref|XP_002126055.1| PREDICTED: similar to ERCC2/XPD gene product [Ciona intestinalis]
Length = 760
Score = 480 bits (1236), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/418 (54%), Positives = 301/418 (72%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V R GK VD +CH LT+S VR + K ++ +C FYE+FDA GRE L GVY++ L
Sbjct: 121 VRGARIGKEVDTKCHQLTASHVRIKQKHDASVELCSFYEQFDANGREEALPAGVYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G+ CPYFLAR I HA IVVYSYHYLLDPKIA++VSKEL++++VVVFDEAHNID
Sbjct: 181 RRYGKLRNWCPYFLARYTITHANIVVYSYHYLLDPKIADLVSKELSKNAVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV I+RRT++K NIQ+L+ L++ ++ D KLR EY RLVEGLR+A ARE
Sbjct: 241 NVCIDSMSVTISRRTLDKCSQNIQSLQNHLEKSRQTDEDKLRNEYKRLVEGLREANIARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
DVVLANPV+PD++L+E VPGNIR AEHF+ F+KRF EYLK+RLRV+ VV E+P +F+ D
Sbjct: 301 ADVVLANPVIPDDVLKESVPGNIRNAEHFLAFMKRFNEYLKSRLRVRHVVSETPLSFIHD 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
A+ +VCI++KPLRFC+
Sbjct: 361 ------------AF--------------------------------EQVCIDKKPLRFCS 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL+TLE+ N++DFS+L ++ + A+LVS+Y KGF +++EPF D+ PT+ NP+L+F
Sbjct: 377 ERLRSLLQTLELANMSDFSNLTLLANFASLVSTYNKGFVVLIEPFDDRTPTIVNPILHFS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+S+AIKPVF RFQ+V+ITSGTLSPLDMYP+IL+F PV M +F+MTLAR CL P+V
Sbjct: 437 CMDASVAIKPVFSRFQSVIITSGTLSPLDMYPRILDFHPVTMATFTMTLARQCLCPVV 494
Score = 246 bits (628), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 117/197 (59%), Positives = 150/197 (76%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV R GK VD +CH LT+S VR + K ++ +C FYE+FDA GRE L GVY++
Sbjct: 120 SVRGARIGKEVDTKCHQLTASHVRIKQKHDASVELCSFYEQFDANGREEALPAGVYNLDD 179
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L+ G+ CPYFLAR I HA IVVYSYHYLLDPKIA++VSKEL++++VVVFDEAHNI
Sbjct: 180 LRRYGKLRNWCPYFLARYTITHANIVVYSYHYLLDPKIADLVSKELSKNAVVVFDEAHNI 239
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC+DS+SV I+RRT++K NIQ+L+ L++ ++ D KLR EY RLVEGLR+A AR
Sbjct: 240 DNVCIDSMSVTISRRTLDKCSQNIQSLQNHLEKSRQTDEDKLRNEYKRLVEGLREANIAR 299
Query: 835 ETDVVLANPVLPDEILQ 851
E DVVLANPV+PD++L+
Sbjct: 300 EADVVLANPVIPDDVLK 316
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/119 (64%), Positives = 96/119 (80%), Gaps = 1/119 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + +D L V+FPYE+IYPEQY+YM+ELK+ LDAKGH +LEMPSGTGKT +LLSLIVAY
Sbjct: 1 MKINVDGLLVYFPYEFIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTATLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHS 541
+P ++KL+YCSRTVPEIEKV+EEL RL +YY K E+ + L LSSRKNLCI++
Sbjct: 61 YEYPEIISKLIYCSRTVPEIEKVLEELRRLMEYYEKEVGEVPKLCALALSSRKNLCINA 119
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 91/124 (73%), Gaps = 7/124 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE+D + + + +++GKTDYG+M+FADKRFARSDK+ KL
Sbjct: 635 ARL-EYLRENYQIRESDFLTFDAMRHAAQCVGRVIRGKTDYGVMVFADKRFARSDKKGKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
P+WIQE+L+D + NLST+E+V ++KR+LR MAQPF++ED LG++LL+ +Q LE E R
Sbjct: 694 PRWIQEHLSDGVCNLSTDESVHITKRFLRIMAQPFSQEDQLGLSLLTREQ-LESEAMRGR 752
Query: 936 EEEV 939
+++
Sbjct: 753 IQQI 756
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 82/124 (66%), Gaps = 4/124 (3%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P VV + + S FETR+D++VIRNYG LLV++ +VPDG+VCFF SY Y+E+
Sbjct: 489 CLCP-VVVTHGNDQVAISSKFETREDVAVIRNYGNLLVEMTKIVPDGIVCFFVSYAYMEN 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKA 683
+VASWY+QGI++N+QK KLLFIETQDA ++ + +GR L S + R K
Sbjct: 548 IVASWYEQGILENVQKNKLLFIETQDAAETSMALDKYQEACENGRGAVLLSVA---RGKV 604
Query: 684 GENI 687
E I
Sbjct: 605 SEGI 608
>gi|167536176|ref|XP_001749760.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771687|gb|EDQ85349.1| predicted protein [Monosiga brevicollis MX1]
Length = 798
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/418 (54%), Positives = 300/418 (71%), Gaps = 46/418 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS+ER G IVD RC LT+S VR++ G+++ C ++ F+A GR+APL GVY++ L
Sbjct: 141 VSQERTGAIVDSRCRQLTASFVREKTADGKSL--CTYFNGFEAHGRDAPLPAGVYNLEDL 198
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K G + CPYFLAR AI HA IVVYSYHYLLDPKIA +VS+E+ R SVVVFDEAHNID
Sbjct: 199 KVFGEQRKFCPYFLARYAITHANIVVYSYHYLLDPKIAELVSREMGRDSVVVFDEAHNID 258
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++S+SV I +R +++A N+++L+ +KEMKE+++ +LR EY LV+GLRD ++ +
Sbjct: 259 NVCIESMSVTIQQRHLDRATANLRSLKNKVKEMKESNTEQLRHEYQNLVQGLRDNRANQA 318
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD V+ANPVLP ++L+E VPGNIR AEHFV F+ RF+EYLKTRLRV+QV+ E PA FL+
Sbjct: 319 TDSVMANPVLPHDVLEEAVPGNIRKAEHFVAFMDRFVEYLKTRLRVKQVLSEPPAAFLE- 377
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
++F + VCIE KPLRFC+
Sbjct: 378 ---------------HVFQS----------------------------VCIEAKPLRFCS 394
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL+TLE+ + D+ + +I ATLVS+Y+KGF++I+EP+ D+AP+VP+PVL F
Sbjct: 395 ERLGSLLQTLELARIDDYGPITLIASFATLVSTYSKGFSLIIEPYDDRAPSVPDPVLRFT 454
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLA+KPVFDRFQ+V+ITSGTLSPLDMYPKILNF+PV M SF MTL+R LLP+V
Sbjct: 455 CMDASLAVKPVFDRFQSVIITSGTLSPLDMYPKILNFRPVTMCSFDMTLSRTSLLPIV 512
Score = 232 bits (592), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 108/196 (55%), Positives = 149/196 (76%), Gaps = 2/196 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS+ER G IVD RC LT+S VR++ G+++ C ++ F+A GR+APL GVY++ L
Sbjct: 141 VSQERTGAIVDSRCRQLTASFVREKTADGKSL--CTYFNGFEAHGRDAPLPAGVYNLEDL 198
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K G + CPYFLAR AI HA IVVYSYHYLLDPKIA +VS+E+ R SVVVFDEAHNID
Sbjct: 199 KVFGEQRKFCPYFLARYAITHANIVVYSYHYLLDPKIAELVSREMGRDSVVVFDEAHNID 258
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC++S+SV I +R +++A N+++L+ +KEMKE+++ +LR EY LV+GLRD ++ +
Sbjct: 259 NVCIESMSVTIQQRHLDRATANLRSLKNKVKEMKESNTEQLRHEYQNLVQGLRDNRANQA 318
Query: 836 TDVVLANPVLPDEILQ 851
TD V+ANPVLP ++L+
Sbjct: 319 TDSVMANPVLPHDVLE 334
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/118 (63%), Positives = 89/118 (75%), Gaps = 1/118 (0%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
MIDDL VFFPY+ IYPEQY YM E+K+ALDAKGH LLEMPSGTGKT SLLSLIV+Y
Sbjct: 23 FMIDDLQVFFPYDLIYPEQYEYMQEIKRALDAKGHALLEMPSGTGKTVSLLSLIVSYQLG 82
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+P + K +YCSRTVPEIEKV+ EL R+ Y K ++ GL LSSR+N+CIH +
Sbjct: 83 YPGRLGKFIYCSRTVPEIEKVLGELKRVIAYMSKEMGRNLDYLGLGLSSRRNMCIHPD 140
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 71/90 (78%), Gaps = 2/90 (2%)
Query: 850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQP 909
++GKTDYGIM FAD+RF+R+DKRSK+PKWIQ+YLTD NLS+EEA+ L +R+ R+MAQP
Sbjct: 676 IRGKTDYGIMCFADQRFSRTDKRSKIPKWIQKYLTDTHLNLSSEEAMVLIRRFQREMAQP 735
Query: 910 FTREDMLGVALLSLDQLLEKEHARAEEEEV 939
+ E+ G++LL+L++L ++ A + V
Sbjct: 736 Y--ENTPGLSLLTLEELQKENRKYASAKTV 763
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L + +E R+ +V R YG LL+DI VPDGVVCFF SY YLES V++W DQGI+ +Q
Sbjct: 522 LSTRYEDREQSAVKRGYGHLLLDICSAVPDGVVCFFVSYEYLESAVSTWIDQGIMTQIQA 581
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
+KL+F+ETQD ++ +GR L S + R K E I
Sbjct: 582 KKLVFVETQDGAETSQALDSFQKACANGRGAVLLSVA---RGKVSEGI 626
>gi|391325164|ref|XP_003737109.1| PREDICTED: LOW QUALITY PROTEIN: TFIIH basal transcription factor
complex helicase XPD subunit-like [Metaseiulus
occidentalis]
Length = 762
Score = 471 bits (1211), Expect = e-129, Method: Compositional matrix adjust.
Identities = 222/418 (53%), Positives = 296/418 (70%), Gaps = 48/418 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
+S+E+DG++VD +C++ TS+ R + GE C F+E FD GRE L PGVY I L
Sbjct: 123 ISEEKDGRVVDAKCYAFTSAY--KRGEEGEE--TCTFFESFDTHGREMLLPPGVYGIDDL 178
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE G+ CPYF AR AI+HA +V+YSYHYLLDPKIA++VSKEL +SVVVFDEAHNID
Sbjct: 179 KEYGQRHHWCPYFTARHAIMHANVVIYSYHYLLDPKIADIVSKELNSNSVVVFDEAHNID 238
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV I+++ ++ N+ +E ++ +++ D+++L+EEY +LV+GLR AQ ARE
Sbjct: 239 NVCIDSMSVTISKKMMDVINANLVVVENRVRHIRQTDASQLQEEYQKLVDGLRVAQQARE 298
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD+++ NPVLPDE+LQE +PG+IRTAEHF FL+R EY+K R+R Q VVQESPA FLKD
Sbjct: 299 TDIIMPNPVLPDEVLQEAIPGSIRTAEHFTAFLRRLYEYVKHRMRTQHVVQESPAAFLKD 358
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
I +VCIERKPLRFCA
Sbjct: 359 --------------------------------------------ICKQVCIERKPLRFCA 374
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+SLLR+LEI+++ +FS LV + H ATL+S+YTKGF +I+EP+ D+ P +PN L
Sbjct: 375 ERLSSLLRSLEISDVANFSPLVRMCHFATLISTYTKGFTLIIEPYDDRTPNIPNCTLQLS 434
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+S+AI+PVF RFQ+V+ITSGTLSPL+MYPKILNF P++M SF+MTLARP + P+V
Sbjct: 435 CMDASIAIRPVFHRFQSVIITSGTLSPLEMYPKILNFHPIVMASFTMTLARPSICPIV 492
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 106/197 (53%), Positives = 149/197 (75%), Gaps = 4/197 (2%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
++S+E+DG++VD +C++ TS+ R + GE C F+E FD GRE L PGVY I
Sbjct: 122 AISEEKDGRVVDAKCYAFTSAY--KRGEEGEE--TCTFFESFDTHGREMLLPPGVYGIDD 177
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
LKE G+ CPYF AR AI+HA +V+YSYHYLLDPKIA++VSKEL +SVVVFDEAHNI
Sbjct: 178 LKEYGQRHHWCPYFTARHAIMHANVVIYSYHYLLDPKIADIVSKELNSNSVVVFDEAHNI 237
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC+DS+SV I+++ ++ N+ +E ++ +++ D+++L+EEY +LV+GLR AQ AR
Sbjct: 238 DNVCIDSMSVTISKKMMDVINANLVVVENRVRHIRQTDASQLQEEYQKLVDGLRVAQQAR 297
Query: 835 ETDVVLANPVLPDEILQ 851
ETD+++ NPVLPDE+LQ
Sbjct: 298 ETDIIMPNPVLPDEVLQ 314
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/132 (57%), Positives = 99/132 (75%), Gaps = 3/132 (2%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + +D L V FPY++IYPEQY+YM+ELK+ LDAKGH +LEMPSGTGKT +LLSLI+AY
Sbjct: 1 MKVNVDGLEVLFPYDFIYPEQYSYMLELKQCLDAKGHGVLEMPSGTGKTATLLSLILAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH---NEEINMTGLVLSSRKNLCIH 540
A+P ++KL+YCSRT+PEIEKVVEE+ RL +YY K + ++ GL L+SRKNLC+H
Sbjct: 61 KAYPSVISKLVYCSRTMPEIEKVVEEVRRLREYYKKEAFISSSNDILGLCLTSRKNLCLH 120
Query: 541 SEFETRDDISVI 552
D V+
Sbjct: 121 PAISEEKDGRVV 132
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 73/84 (86%)
Query: 850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQP 909
L+GKTDYG+M+FADKRF+R DK+ KLP+WIQEYLTD+L NLSTEE VQ+ K++LRQMAQP
Sbjct: 666 LRGKTDYGVMVFADKRFSRYDKKXKLPRWIQEYLTDSLCNLSTEEGVQVVKKFLRQMAQP 725
Query: 910 FTREDMLGVALLSLDQLLEKEHAR 933
F+RED LG++LL+ +QL + E R
Sbjct: 726 FSREDQLGISLLTEEQLNDPEVHR 749
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 63/74 (85%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S +E RDDI+VIRNYG L+V+++ VVPDG+V FFTSY YLE+VVA WY+QGI+D + +
Sbjct: 502 ISSRYENRDDIAVIRNYGNLIVEMSAVVPDGLVVFFTSYQYLENVVALWYEQGIVDQILR 561
Query: 640 RKLLFIETQDALDS 653
+KLLFIETQD+ ++
Sbjct: 562 KKLLFIETQDSAET 575
>gi|193606019|ref|XP_001943653.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like [Acyrthosiphon pisum]
Length = 756
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/419 (51%), Positives = 289/419 (68%), Gaps = 46/419 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
++ E +G++VD RCH+LT+ VR RH GE + VC+FYEK D++GR+ L P +Y+I L
Sbjct: 120 IAGEHNGRVVDARCHALTAPFVRARHADGEAVNVCEFYEKLDSLGRDTILPPNIYNIEDL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE+G + G+CPYF+ARQ +IHA +V+YSYHYLLDPKIA +VSK+ ++++VVFDEAHNID
Sbjct: 180 KELGVKQGICPYFVARQTLIHANVVIYSYHYLLDPKIAGIVSKDFNKNTIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DSLS I ++KA+ + L+ + MKE DS +L+EEY ++V+GLR+ RE
Sbjct: 240 NVCIDSLSSHITSNNLDKAIEGLNKLDTEVTAMKERDSQRLKEEYRKMVDGLREIYRNRE 299
Query: 181 TDVVLANPVLPDEILQEV-VPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLK 239
+ LANP++PD++L+ +PG+IR+AEH++GF+KRFI YLK R+ VVQE+P F+K
Sbjct: 300 ANAALANPIVPDQVLKITELPGSIRSAEHYIGFMKRFIMYLKLRMNSTTVVQETPIMFIK 359
Query: 240 DISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFC 299
D + KVCI RKPLRFC
Sbjct: 360 D--------------------------------------------VYQKVCINRKPLRFC 375
Query: 300 AERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYF 359
ERL+SLLRTLEI+ +TDFS L+ + ATLVS+Y KGF II+EPF +++ T + V++F
Sbjct: 376 TERLSSLLRTLEISEITDFSPLITVAQFATLVSTYMKGFMIIIEPFDERSST-DSCVMHF 434
Query: 360 CCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+S+AIKP+ D F TV+ITSGTLSPLDMYPKILN PVIM S +MTL+R C LPMV
Sbjct: 435 SCLDASIAIKPILDYFNTVLITSGTLSPLDMYPKILNINPVIMTSLTMTLSRQCFLPMV 493
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 103/197 (52%), Positives = 149/197 (75%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
S++ E +G++VD RCH+LT+ VR RH GE + VC+FYEK D++GR+ L P +Y+I
Sbjct: 119 SIAGEHNGRVVDARCHALTAPFVRARHADGEAVNVCEFYEKLDSLGRDTILPPNIYNIED 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
LKE+G + G+CPYF+ARQ +IHA +V+YSYHYLLDPKIA +VSK+ ++++VVFDEAHNI
Sbjct: 179 LKELGVKQGICPYFVARQTLIHANVVIYSYHYLLDPKIAGIVSKDFNKNTIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC+DSLS I ++KA+ + L+ + MKE DS +L+EEY ++V+GLR+ R
Sbjct: 239 DNVCIDSLSSHITSNNLDKAIEGLNKLDTEVTAMKERDSQRLKEEYRKMVDGLREIYRNR 298
Query: 835 ETDVVLANPVLPDEILQ 851
E + LANP++PD++L+
Sbjct: 299 EANAALANPIVPDQVLK 315
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/117 (67%), Positives = 93/117 (79%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID+L V FPYEYIYPEQYAYMVELKKA+DAKGHCLLEMPSGTGKT ++LSLIVAYM
Sbjct: 1 MKFFIDELEVLFPYEYIYPEQYAYMVELKKAIDAKGHCLLEMPSGTGKTITILSLIVAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIH 540
+P + KLLY +RT+ EIEK EEL L DYY + + N+ G+VLSSRKNLC++
Sbjct: 61 IKYPAKLGKLLYSTRTLSEIEKAAEELRVLCDYYKSNKYDANVLGVVLSSRKNLCVN 117
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 64/77 (83%)
Query: 850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQP 909
++GK DYGIM+FADKRFAR DKRSKLPKWIQ YLTDN+ NL+ +EA Q++KRWLR +AQP
Sbjct: 667 IRGKMDYGIMVFADKRFARHDKRSKLPKWIQAYLTDNVCNLTVDEAAQMAKRWLRYIAQP 726
Query: 910 FTREDMLGVALLSLDQL 926
E+ +GV+LL ++ L
Sbjct: 727 DPIENQMGVSLLDVNGL 743
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 111/212 (52%), Gaps = 22/212 (10%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S +E+R+D SV RNYG LL+++ VVPDGVVCFF SYLY++SVVA+WYDQG+I+ +
Sbjct: 503 LTSKWESREDSSVARNYGHLLLEMVKVVPDGVVCFFPSYLYMKSVVAAWYDQGLIEKILD 562
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAV 699
KL+FIETQ+ + + K I G+ L S + R K E + DF +
Sbjct: 563 YKLIFIETQNIVVTNHAIKCYAEAIERGKGALLLSVA---RGKVSEGM---DFDHHY--- 613
Query: 700 GREAPL--APGVYSITKLKEMGRELGLCPY------FLARQAIIH-AKIVVYSYHYLLDP 750
GR + P VY+ ++ + E Y FL A+ H A+ V + +D
Sbjct: 614 GRAVIVLGMPYVYTQCRILKARMEYLCSQYQISEGDFLTFDAMRHTAQCVGRAIRGKMDY 673
Query: 751 KIANVVSKELA----RSSVVVFDEAHNIDNVC 778
I K A RS + + +A+ DNVC
Sbjct: 674 GIMVFADKRFARHDKRSKLPKWIQAYLTDNVC 705
>gi|405958071|gb|EKC24234.1| TFIIH basal transcription factor complex helicase subunit
[Crassostrea gigas]
Length = 1184
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 231/461 (50%), Positives = 299/461 (64%), Gaps = 87/461 (18%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT-- 58
VS+ERDGK VD CH LT+S VR HK +PVC FYE +DA G+E PL GVY +
Sbjct: 502 VSQERDGKNVDALCHKLTASFVRANHKRDATVPVCSFYESYDAHGKEMPLPEGVYGLITH 561
Query: 59 --------------KLKEM-GREL---------------GLCPYFLA-----------RQ 77
K+ E+ +EL +C ++ +Q
Sbjct: 562 ANIVVYSYYYLLDPKIAEVVSKELSKNAVVVFDEAHNIDNVCIESMSIKITRRTLDKCQQ 621
Query: 78 AIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIE 137
I + SY+YLLDPKIA VVSKEL++++VVVFDEAHNIDNVC++S+S++I RRT++
Sbjct: 622 NIDGLSKQIQSYYYLLDPKIAEVVSKELSKNAVVVFDEAHNIDNVCIESMSIKITRRTLD 681
Query: 138 KAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQE 197
K NI L ++ +K+ D+ +L+ EY +LV+GLRDA ARETDV+LANPVLPD++L+E
Sbjct: 682 KCQQNIDGLSKQIQRLKDCDAERLKTEYQKLVQGLRDANIARETDVILANPVLPDDVLKE 741
Query: 198 VVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYI 257
VPGNIRTAEHF+GF+KRF+EY+
Sbjct: 742 AVPGNIRTAEHFLGFMKRFLEYM------------------------------------- 764
Query: 258 FSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTD 317
K RLRVQ VV ESP +FLKD KVCIERKPLRFCAERL S++RTLE+ + D
Sbjct: 765 -------KIRLRVQHVVSESPPSFLKDCYQKVCIERKPLRFCAERLNSMMRTLELVEIHD 817
Query: 318 FSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQT 377
FS+L ++ H ATLVS+Y KGF +I+EPF D+ PT+ NP+L+F C+D+S+AIKPVFDRFQT
Sbjct: 818 FSALSLLCHFATLVSTYAKGFVLIIEPFDDRTPTISNPILHFSCMDASIAIKPVFDRFQT 877
Query: 378 VVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
VVITSGTLSPL+MYP+IL+F+PV M +F+MTLAR C+ PMV
Sbjct: 878 VVITSGTLSPLEMYPRILDFRPVTMATFTMTLARTCICPMV 918
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 146/239 (61%), Gaps = 43/239 (17%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT-- 713
VS+ERDGK VD CH LT+S VR HK +PVC FYE +DA G+E PL GVY +
Sbjct: 502 VSQERDGKNVDALCHKLTASFVRANHKRDATVPVCSFYESYDAHGKEMPLPEGVYGLITH 561
Query: 714 --------------KLKEM-GREL---------------GLCPYFLA-----------RQ 732
K+ E+ +EL +C ++ +Q
Sbjct: 562 ANIVVYSYYYLLDPKIAEVVSKELSKNAVVVFDEAHNIDNVCIESMSIKITRRTLDKCQQ 621
Query: 733 AIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIE 792
I + SY+YLLDPKIA VVSKEL++++VVVFDEAHNIDNVC++S+S++I RRT++
Sbjct: 622 NIDGLSKQIQSYYYLLDPKIAEVVSKELSKNAVVVFDEAHNIDNVCIESMSIKITRRTLD 681
Query: 793 KAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
K NI L ++ +K+ D+ +L+ EY +LV+GLRDA ARETDV+LANPVLPD++L+
Sbjct: 682 KCQQNIDGLSKQIQRLKDCDAERLKTEYQKLVQGLRDANIARETDVILANPVLPDDVLK 740
Score = 172 bits (437), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 86/125 (68%), Positives = 98/125 (78%), Gaps = 2/125 (1%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
L ID L V+FPY+YIYPEQY YM+ELKK+LDAKGHC LEMPSGTGKT SLLSLIVAYM A
Sbjct: 383 LNIDGLLVYFPYDYIYPEQYMYMLELKKSLDAKGHCALEMPSGTGKTISLLSLIVAYMKA 442
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH--NEEINMTGLVLSSRKNLCIHSEF 543
+PL+VTKL+YCSRTVPE+EKVV EL L DYY + + + GL LSSRKNLCI+ E
Sbjct: 443 NPLEVTKLIYCSRTVPELEKVVAELKNLMDYYEQQLGKGKPKILGLALSSRKNLCINPEV 502
Query: 544 ETRDD 548
D
Sbjct: 503 SQERD 507
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/111 (61%), Positives = 85/111 (76%), Gaps = 6/111 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + L+GKTDYGIM+FADKRFAR+DKRSK+
Sbjct: 1059 ARL-EYLRDQYQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMVFADKRFARADKRSKI 1117
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
P+WIQEYL D L NLS +EAVQ+SKR+LRQMAQPF+RED LG++LL+++QL
Sbjct: 1118 PRWIQEYLKDGLCNLSVDEAVQVSKRFLRQMAQPFSREDQLGLSLLTVEQL 1168
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 93/155 (60%), Gaps = 12/155 (7%)
Query: 563 ACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLE 622
C+ P VV + + S +ETR+D++VIRNYG LLV+ +VPDG+VCFFTSY+Y+E
Sbjct: 912 TCICP-MVVSKGNDQVAMTSKYETREDVAVIRNYGNLLVEFCSIVPDGIVCFFTSYIYME 970
Query: 623 SVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHK 682
S VA+WY+QGI+D +QK KLLFIETQDA ++ +GR L S + R K
Sbjct: 971 STVAAWYEQGILDQVQKHKLLFIETQDAAETSLALLNYQKACENGRGAVLLSVA---RGK 1027
Query: 683 AGENIPVCDFYEKFDAVGREAPL--APGVYSITKL 715
E I DF F GR + P VY+ +K+
Sbjct: 1028 VSEGI---DFDHHF---GRAVIMFGIPYVYTQSKI 1056
>gi|12835975|dbj|BAB23443.1| unnamed protein product [Mus musculus]
Length = 593
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/370 (58%), Positives = 269/370 (72%), Gaps = 44/370 (11%)
Query: 49 PLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARS 108
PL G+Y++ LK +G+ G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR
Sbjct: 2 PLPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARK 61
Query: 109 SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARL 168
+VVVFDEAHNIDNVC+DS+SV + RRT+++ N+ TL+ T+ +KE D +LR+E RL
Sbjct: 62 AVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDECRRL 121
Query: 169 VEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQ 228
VEGLR+A ARETD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ
Sbjct: 122 VEGLREASVARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQH 181
Query: 229 VVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSK 288
VVQESP F L ++ +
Sbjct: 182 VVQESPPAF--------------------------------------------LSGLAQR 197
Query: 289 VCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDK 348
VCI+RKPLRFCAERL SLL TLEI +L DFS L ++ + ATLVS+Y KGF II+EPF D+
Sbjct: 198 VCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDR 257
Query: 349 APTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMT 408
PT+ NPVL+F C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MT
Sbjct: 258 TPTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMT 317
Query: 409 LARPCLLPMV 418
LAR CL PM+
Sbjct: 318 LARVCLCPMI 327
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 94/148 (63%), Positives = 119/148 (80%)
Query: 704 PLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARS 763
PL G+Y++ LK +G+ G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR
Sbjct: 2 PLPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARK 61
Query: 764 SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARL 823
+VVVFDEAHNIDNVC+DS+SV + RRT+++ N+ TL+ T+ +KE D +LR+E RL
Sbjct: 62 AVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDECRRL 121
Query: 824 VEGLRDAQSARETDVVLANPVLPDEILQ 851
VEGLR+A ARETD LANPVLPDE+LQ
Sbjct: 122 VEGLREASVARETDAHLANPVLPDEVLQ 149
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 337 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 396
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 397 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 449
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 71/99 (71%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 468 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 526
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD+ NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 527 PRWIQEHLTDSNLNLTVDEGVQVAKYFLRQMAQPFHRED 565
>gi|340376021|ref|XP_003386532.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like [Amphimedon queenslandica]
Length = 754
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 205/418 (49%), Positives = 292/418 (69%), Gaps = 47/418 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
++ ++GK+VD C+ LT+S VR++HKA ++ PVC F+E+FD GR PL PGVY + L
Sbjct: 121 IAGNKEGKLVDTECYKLTASFVREKHKADKSTPVCQFFEEFDVKGRVDPLKPGVYDMDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +G+ G CPY+LAR + HA +++YSYHYLLDPKIA +VSK L + SVVVFDEAHNID
Sbjct: 181 KSLGQTKGWCPYYLARYTLGHATVIMYSYHYLLDPKIAEIVSKGLPQQSVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++S+S+ I R+T+EK NI L+ L+E+ E +LR+EY RLVEGLR A+ RE
Sbjct: 241 NVCIESMSITIGRKTLEKCTANINNLQAKLRELGE---ERLRQEYQRLVEGLRRAREERE 297
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D+ LANPVLPD++LQE +PGN+R EHF+ F+KRF EYLK+RL + VV E+P FL
Sbjct: 298 NDIQLANPVLPDDVLQEALPGNMRRGEHFLLFMKRFAEYLKSRLLARHVVSETPKYFL-- 355
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
++I S VCI+RKPLRFC+
Sbjct: 356 ------------------------------------------QNIYSTVCIDRKPLRFCS 373
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL +L+TL++ L+D+S++ + + ATLVS+YT+GF++I+EPF ++APT+ NP+L+F
Sbjct: 374 ERLHFMLQTLQLLELSDYSAITKVANFATLVSTYTEGFSLIIEPFDNRAPTIFNPILHFS 433
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+ +AIKPVFD + +V++TS T+SPLDMYP++L FQP ++ S+ ++LARPC+ P++
Sbjct: 434 CMDAGIAIKPVFDHYTSVILTSATISPLDMYPRLLRFQPALLSSYGISLARPCICPII 491
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 118/230 (51%), Positives = 160/230 (69%), Gaps = 10/230 (4%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
++ ++GK+VD C+ LT+S VR++HKA ++ PVC F+E+FD GR PL PGVY + L
Sbjct: 121 IAGNKEGKLVDTECYKLTASFVREKHKADKSTPVCQFFEEFDVKGRVDPLKPGVYDMDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K +G+ G CPY+LAR + HA +++YSYHYLLDPKIA +VSK L + SVVVFDEAHNID
Sbjct: 181 KSLGQTKGWCPYYLARYTLGHATVIMYSYHYLLDPKIAEIVSKGLPQQSVVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC++S+S+ I R+T+EK NI L+ L+E+ E +LR+EY RLVEGLR A+ RE
Sbjct: 241 NVCIESMSITIGRKTLEKCTANINNLQAKLRELGE---ERLRQEYQRLVEGLRRAREERE 297
Query: 836 TDVVLANPVLPDEILQ----GKTDYG--IMIFADKRFARSDKRSKLPKWI 879
D+ LANPVLPD++LQ G G ++F KRFA K L + +
Sbjct: 298 NDIQLANPVLPDDVLQEALPGNMRRGEHFLLFM-KRFAEYLKSRLLARHV 346
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/118 (62%), Positives = 88/118 (74%), Gaps = 1/118 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + ID L V FPYEY+YPEQY YM++LK+ LDAKGHC+LEMP GTGKT SLL+LI+AY
Sbjct: 1 MKINIDGLLVIFPYEYVYPEQYTYMLDLKRTLDAKGHCVLEMPCGTGKTVSLLALIIAYH 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYY-IKHNEEINMTGLVLSSRKNLCIH 540
AHP + KL+YCSRTV EI K + EL RL D Y + N+ G+ LSSRKNLCIH
Sbjct: 61 MAHPHHIQKLIYCSRTVQEINKAMSELKRLLDAYKSEFGSTPNVLGVALSSRKNLCIH 118
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 86/122 (70%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLPD-----EILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + L+GKTDYGIM+FADKR+ RSDK+ KL
Sbjct: 632 ARL-EFLRDNFQIRENDFLTFDAMRNSAQCIGRALRGKTDYGIMVFADKRYGRSDKKGKL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQE+L+D + +LS EE+V + KR+LRQMAQPF +E+ +G+ALL+L+QL E+E R
Sbjct: 691 PKWIQEHLSDAVCSLSIEESVHICKRFLRQMAQPFKKEEQIGLALLTLEQLREREEKRLA 750
Query: 936 EE 937
E
Sbjct: 751 NE 752
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 64/100 (64%), Gaps = 2/100 (2%)
Query: 550 SVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPD 609
+++ +YG L C+ P +V + + + FE R D ++IRNYG ++V+++ V+PD
Sbjct: 473 ALLSSYGISLAR-PCICPI-IVARGNDQVSITTKFEERGDTAIIRNYGNVVVELSSVIPD 530
Query: 610 GVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
G+V FF SY Y+E V W DQG++ +Q+ KL+F+ET D
Sbjct: 531 GIVAFFPSYEYMEQTVHEWVDQGLMSKIQRNKLVFVETVD 570
>gi|444730736|gb|ELW71110.1| TFIIH basal transcription factor complex helicase XPD subunit
[Tupaia chinensis]
Length = 732
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/418 (53%), Positives = 280/418 (66%), Gaps = 72/418 (17%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FDA GR+ PL G+Y++ L
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRVQYQQDSSLPHCRFYEEFDAHGRQVPLPMGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ N++TL+ T+ +KE D +LREEY RLVEGLR+A +ARE
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQANLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE RLRVQ VVQESP F
Sbjct: 301 TDAHLANPVLPDE----------------------------WRLRVQHVVQESPPAF--- 329
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 330 -----------------------------------------LSSLAQRVCIQRKPLRFCA 348
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLEI +L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F
Sbjct: 349 ERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFS 408
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLAIKPVF RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 409 CMDASLAIKPVFSRFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 466
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 132/226 (58%), Positives = 166/226 (73%), Gaps = 17/226 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E QD AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 88 RKLLNFYEKQDGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRVQYQ 147
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FDA GR+ PL G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 148 QDSSLPHCRFYEEFDAHGRQVPLPMGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVY 207
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ N++TL+
Sbjct: 208 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQANLETLQ 267
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDE 848
T+ +KE D +LREEY RLVEGLR+A +ARETD LANPVLPDE
Sbjct: 268 KTVLRIKETDEQRLREEYRRLVEGLREASAARETDAHLANPVLPDE 313
Score = 172 bits (437), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 101/120 (84%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN-EEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K + E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQDGEKLPFLGLALSSRKNLCIHPE 120
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 476 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 535
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 536 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 588
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 70/99 (70%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 607 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 665
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 666 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 704
>gi|384496850|gb|EIE87341.1| hypothetical protein RO3G_12052 [Rhizopus delemar RA 99-880]
Length = 675
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/433 (50%), Positives = 296/433 (68%), Gaps = 59/433 (13%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVR--------DRHKAGEN-------IPVCDFYEKFDAVG 45
VSKER G+ VD +C +LT+S VR ++ + G+ +P+CDFYE+ +A
Sbjct: 79 VSKERKGRSVDSKCRNLTASWVRAKVVKRRPEQEQDGDAMEVDQSPVPLCDFYEQLEAAN 138
Query: 46 REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL 105
P+ G+Y++ LK GR++ CPY+L R+AI A +++YSYHY+LDPK+A +VS+EL
Sbjct: 139 SPNPIPNGIYTLEDLKAYGRKMRYCPYYLVRRAIPFANVIIYSYHYMLDPKVAELVSREL 198
Query: 106 ARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEY 165
++ S+VVFDEAHNIDNVC++SLS+ + R ++ + +I L ++E+K D+ +L+ EY
Sbjct: 199 SKDSIVVFDEAHNIDNVCIESLSIDLTRPMLDASARSITVLSEKIEEIKNTDAERLKNEY 258
Query: 166 ARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLR 225
+LVEGLRDA SAR+ D +A+P+LPD++L+E VPGNIR AEHFV FL+RFIEYLKTRLR
Sbjct: 259 TKLVEGLRDANSARDEDTFMASPILPDDLLKEAVPGNIRRAEHFVAFLRRFIEYLKTRLR 318
Query: 226 VQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDI 285
V VV E+PA+FL+ LKD+
Sbjct: 319 VMHVVAETPASFLQH-----------------------------------------LKDV 337
Query: 286 SSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPF 345
+ IERKPLRFCAERL+SL+RTLE+T+L FSSL + ATL S+Y KGF +I+EPF
Sbjct: 338 TY---IERKPLRFCAERLSSLVRTLELTDLEHFSSLQKVAAFATLTSTYDKGFLLILEPF 394
Query: 346 SDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSF 405
+ T+PNPVL+F CLD+S+AIKPVFDRF TVVITSGTLSPLDMYPK+LNF+ V+ S+
Sbjct: 395 EHETATIPNPVLHFTCLDASIAIKPVFDRFSTVVITSGTLSPLDMYPKMLNFEAVVQESY 454
Query: 406 SMTLARPCLLPMV 418
SMTL+R C LPMV
Sbjct: 455 SMTLSRNCFLPMV 467
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 147/211 (69%), Gaps = 15/211 (7%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVR--------DRHKAGEN-------IPVCDFYEKFDAVG 700
VSKER G+ VD +C +LT+S VR ++ + G+ +P+CDFYE+ +A
Sbjct: 79 VSKERKGRSVDSKCRNLTASWVRAKVVKRRPEQEQDGDAMEVDQSPVPLCDFYEQLEAAN 138
Query: 701 REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL 760
P+ G+Y++ LK GR++ CPY+L R+AI A +++YSYHY+LDPK+A +VS+EL
Sbjct: 139 SPNPIPNGIYTLEDLKAYGRKMRYCPYYLVRRAIPFANVIIYSYHYMLDPKVAELVSREL 198
Query: 761 ARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEY 820
++ S+VVFDEAHNIDNVC++SLS+ + R ++ + +I L ++E+K D+ +L+ EY
Sbjct: 199 SKDSIVVFDEAHNIDNVCIESLSIDLTRPMLDASARSITVLSEKIEEIKNTDAERLKNEY 258
Query: 821 ARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
+LVEGLRDA SAR+ D +A+P+LPD++L+
Sbjct: 259 TKLVEGLRDANSARDEDTFMASPILPDDLLK 289
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C +P V+ + + + S FE R+D +V+RN+GQ++V+ A +VPDGVVCFF SYLY+ES
Sbjct: 462 CFLP-MVITRGSDQVAVSSKFEVRNDPAVVRNFGQIMVEFAKIVPDGVVCFFPSYLYMES 520
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKA 683
+V+ W D GI++ K KL+F+ET DA ++ +GR L S + R K
Sbjct: 521 IVSMWNDMGILNEAWKYKLIFVETPDAAETSLALANYRKACDNGRGAILLSVA---RGKV 577
Query: 684 GENI 687
E I
Sbjct: 578 SEGI 581
Score = 85.9 bits (211), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 54/78 (69%)
Query: 465 MPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI 524
MPSGTGKT SLLSLIVAY +P KL+YCSRTVPEI+K + EL RL +Y +
Sbjct: 1 MPSGTGKTVSLLSLIVAYQMQYPEKHRKLVYCSRTVPEIDKALGELKRLMEYRRDQGIQE 60
Query: 525 NMTGLVLSSRKNLCIHSE 542
G+ L+SRKNLC++ +
Sbjct: 61 EFFGIGLTSRKNLCLNPD 78
>gi|256088634|ref|XP_002580433.1| DNA repair helicase rad3/xp-d [Schistosoma mansoni]
Length = 764
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 212/418 (50%), Positives = 285/418 (68%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V + DG VD C LT+S VR +H N+P C +YE+FD GR+ PL G+Y++ +
Sbjct: 98 VKQAGDGAAVDSACFRLTASFVRKKHMTDPNVPYCKYYEEFDLHGRDNPLPTGIYNMADI 157
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K ++ CPYFL R AI +A IVVYSY YLLDPKIANVVS+EL ++SVVVFDEAHNID
Sbjct: 158 KTYAKKHNYCPYFLTRYAISYANIVVYSYFYLLDPKIANVVSRELPKNSVVVFDEAHNID 217
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++S+S I RR++EK ++ L T+ E K +S +L+EEY RLVEGLR A+ ++E
Sbjct: 218 NVCIESMSCLITRRSLEKCTTSLNLLTQTVNEAKTNNSERLKEEYQRLVEGLRQAKLSKE 277
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD+VLANP LPD+ILQE +PG++R+A+ F+ FL+RF+EY+K RLR+ VV E+P FL
Sbjct: 278 TDLVLANPALPDDILQESIPGSLRSADSFLSFLRRFLEYVKLRLRIAHVVHETPVAFL-- 335
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+D KVC++RKPL+FCA
Sbjct: 336 ------------------------------------------RDCLEKVCVDRKPLQFCA 353
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLE+ + +FSSL ++ + ATLVS+YT+GF +I+EPF ++ PT+ NPVLYF
Sbjct: 354 ERLRSLLHTLELADYANFSSLTLLCNFATLVSTYTRGFCLIIEPFDERTPTIINPVLYFH 413
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SL I+P+ RF +V+ITSGTLSPL+MYP+IL+F PV SF+MTLAR C+LPM+
Sbjct: 414 CMDASLPIRPIMSRFTSVIITSGTLSPLEMYPRILDFHPVNTVSFTMTLARNCVLPMI 471
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 151/220 (68%), Gaps = 9/220 (4%)
Query: 632 GIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCD 691
GI+ L RK L I+ R V + DG VD C LT+S VR +H N+P C
Sbjct: 83 GIV--LSSRKNLCIQ-------RDVKQAGDGAAVDSACFRLTASFVRKKHMTDPNVPYCK 133
Query: 692 FYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPK 751
+YE+FD GR+ PL G+Y++ +K ++ CPYFL R AI +A IVVYSY YLLDPK
Sbjct: 134 YYEEFDLHGRDNPLPTGIYNMADIKTYAKKHNYCPYFLTRYAISYANIVVYSYFYLLDPK 193
Query: 752 IANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEA 811
IANVVS+EL ++SVVVFDEAHNIDNVC++S+S I RR++EK ++ L T+ E K
Sbjct: 194 IANVVSRELPKNSVVVFDEAHNIDNVCIESMSCLITRRSLEKCTTSLNLLTQTVNEAKTN 253
Query: 812 DSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
+S +L+EEY RLVEGLR A+ ++ETD+VLANP LPD+ILQ
Sbjct: 254 NSERLKEEYQRLVEGLRQAKLSKETDLVLANPALPDDILQ 293
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M+ELK+ +DAKGH +LEMPSGTGKT SLLSLIVAYM A P V K +YCSRTVPE+EKV+
Sbjct: 1 MIELKRTIDAKGHGVLEMPSGTGKTVSLLSLIVAYMKARPGIVEKFIYCSRTVPELEKVI 60
Query: 508 EELARLFDYYIKHNEE--INMTGLVLSSRKNLCIHSEFETRDDISVI 552
EEL L YY E + G+VLSSRKNLCI + + D + +
Sbjct: 61 EELKVLDKYYATETNEKGCGLLGIVLSSRKNLCIQRDVKQAGDGAAV 107
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 64/85 (75%), Gaps = 3/85 (3%)
Query: 850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQP 909
++GK+DYGIMI ADKR+AR+DKR KLP WIQ L D NLS EE++Q S+R+LR M QP
Sbjct: 645 IRGKSDYGIMILADKRYARADKRFKLPGWIQSQLQDAFINLSIEESIQASRRFLRLMGQP 704
Query: 910 FTREDMLGVALLS---LDQLLEKEH 931
F + D LG+ALL+ +++L+E+
Sbjct: 705 FNKNDQLGLALLTREHINKLIEQNQ 729
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
CV+P +V + + + FE+R D++VIRNYG LL ++ VVPDG+V FF SY YLES
Sbjct: 466 CVLP-MIVSKGNDQVPMTTKFESRQDVAVIRNYGHLLAQLSAVVPDGIVAFFPSYHYLES 524
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDA 650
ASWY+Q I++ +Q+ KLLF+ETQDA
Sbjct: 525 TFASWYEQHIVEQIQRNKLLFVETQDA 551
>gi|350644408|emb|CCD60850.1| DNA repair helicase rad3/xp-d, putative [Schistosoma mansoni]
Length = 698
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 212/418 (50%), Positives = 285/418 (68%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V + DG VD C LT+S VR +H N+P C +YE+FD GR+ PL G+Y++ +
Sbjct: 98 VKQAGDGAAVDSACFRLTASFVRKKHMTDPNVPYCKYYEEFDLHGRDNPLPTGIYNMADI 157
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K ++ CPYFL R AI +A IVVYSY YLLDPKIANVVS+EL ++SVVVFDEAHNID
Sbjct: 158 KTYAKKHNYCPYFLTRYAISYANIVVYSYFYLLDPKIANVVSRELPKNSVVVFDEAHNID 217
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++S+S I RR++EK ++ L T+ E K +S +L+EEY RLVEGLR A+ ++E
Sbjct: 218 NVCIESMSCLITRRSLEKCTTSLNLLTQTVNEAKTNNSERLKEEYQRLVEGLRQAKLSKE 277
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD+VLANP LPD+ILQE +PG++R+A+ F+ FL+RF+EY+K RLR+ VV E+P FL
Sbjct: 278 TDLVLANPALPDDILQESIPGSLRSADSFLSFLRRFLEYVKLRLRIAHVVHETPVAFL-- 335
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+D KVC++RKPL+FCA
Sbjct: 336 ------------------------------------------RDCLEKVCVDRKPLQFCA 353
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL TLE+ + +FSSL ++ + ATLVS+YT+GF +I+EPF ++ PT+ NPVLYF
Sbjct: 354 ERLRSLLHTLELADYANFSSLTLLCNFATLVSTYTRGFCLIIEPFDERKPTIINPVLYFH 413
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SL I+P+ RF +V+ITSGTLSPL+MYP+IL+F PV SF+MTLAR C+LPM+
Sbjct: 414 CMDASLPIRPIMSRFTSVIITSGTLSPLEMYPRILDFHPVNTVSFTMTLARNCVLPMI 471
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 151/220 (68%), Gaps = 9/220 (4%)
Query: 632 GIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCD 691
GI+ L RK L I+ R V + DG VD C LT+S VR +H N+P C
Sbjct: 83 GIV--LSSRKNLCIQ-------RDVKQAGDGAAVDSACFRLTASFVRKKHMTDPNVPYCK 133
Query: 692 FYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPK 751
+YE+FD GR+ PL G+Y++ +K ++ CPYFL R AI +A IVVYSY YLLDPK
Sbjct: 134 YYEEFDLHGRDNPLPTGIYNMADIKTYAKKHNYCPYFLTRYAISYANIVVYSYFYLLDPK 193
Query: 752 IANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEA 811
IANVVS+EL ++SVVVFDEAHNIDNVC++S+S I RR++EK ++ L T+ E K
Sbjct: 194 IANVVSRELPKNSVVVFDEAHNIDNVCIESMSCLITRRSLEKCTTSLNLLTQTVNEAKTN 253
Query: 812 DSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
+S +L+EEY RLVEGLR A+ ++ETD+VLANP LPD+ILQ
Sbjct: 254 NSERLKEEYQRLVEGLRQAKLSKETDLVLANPALPDDILQ 293
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M+ELK+ +DAKGH +LEMPSGTGKT SLLSLIVAYM A P V K +YCSRTVPE+EKV+
Sbjct: 1 MIELKRTIDAKGHGVLEMPSGTGKTVSLLSLIVAYMKARPGIVEKFIYCSRTVPELEKVI 60
Query: 508 EELARLFDYYIKHNEE--INMTGLVLSSRKNLCIHSEFETRDDISVI 552
EEL L YY E + G+VLSSRKNLCI + + D + +
Sbjct: 61 EELKVLDKYYATETNEKGCGLLGIVLSSRKNLCIQRDVKQAGDGAAV 107
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 64/85 (75%), Gaps = 3/85 (3%)
Query: 850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQP 909
++GK+DYGIMI ADKR+AR+DKR KLP WIQ L D NLS EE++Q S+R+LR M QP
Sbjct: 597 IRGKSDYGIMILADKRYARADKRFKLPGWIQSQLQDAFINLSIEESIQASRRFLRLMGQP 656
Query: 910 FTREDMLGVALLS---LDQLLEKEH 931
F + D LG+ALL+ +++L+E+
Sbjct: 657 FNKNDQLGLALLTREHINKLIEQNQ 681
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
CV+P +V + + + FE+R D++VIRNYG LL ++ VVPDG+V FF SY YLES
Sbjct: 466 CVLP-MIVSKGNDQVPMTTKFESRQDVAVIRNYGHLLAQLSAVVPDGIVAFFPSYHYLES 524
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDA 650
ASWY+Q I++ +Q+ KLLF+ETQDA
Sbjct: 525 TFASWYEQHIVEQIQRNKLLFVETQDA 551
>gi|339236173|ref|XP_003379641.1| TFIIH basal transcription factor complex helicase subunit
[Trichinella spiralis]
gi|316977682|gb|EFV60753.1| TFIIH basal transcription factor complex helicase subunit
[Trichinella spiralis]
Length = 777
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/418 (51%), Positives = 285/418 (68%), Gaps = 57/418 (13%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSK R GKIVDG C SLTSS VR R +IP C+++E+F G E+ L GVY++ L
Sbjct: 136 VSKLRLGKIVDGHCLSLTSSFVRARRLDDPSIPCCNYFEEFMEEGVESALPRGVYNLDDL 195
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K GR +G CPYF+AR A++ A ++VYSYHYLLDPKIA ++SK+L+R SVVVFDEAHNID
Sbjct: 196 KAYGRRMGWCPYFVARHALLRADVIVYSYHYLLDPKIAELISKDLSRRSVVVFDEAHNID 255
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLSV + +RTIE+ N+++L+ +KE KE D A L EY RLVEGLR+A+ R+
Sbjct: 256 NVCIESLSVTLKKRTIERCQENLESLQKFVKETKERDVAHLDREYKRLVEGLREAKHLRD 315
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD +LANPVLPD+IL+E VPG+IR AEHF+ FL+RF+ Y+K R+ V+ E+PA FL D
Sbjct: 316 TDKILANPVLPDDILEEAVPGSIRNAEHFIAFLRRFLNYVKHRMSSNSVMIENPAVFLSD 375
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ + A IERKPLRFC+
Sbjct: 376 VQIRTA--------------------------------------------IERKPLRFCS 391
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERLASLLRTLE+++ ++F+ L+++ + ATLVS+Y KGF ++ EPF +K PTVPNPV+ F
Sbjct: 392 ERLASLLRTLELSDTSNFAPLILLANFATLVSTYAKGFCLLFEPFDEKLPTVPNPVMTFS 451
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+S+AI+P TLSPLDMYPKILNF P +M SFSMTLARPC+LP++
Sbjct: 452 CMDASIAIRP-------------TLSPLDMYPKILNFDPAVMASFSMTLARPCILPLI 496
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/196 (58%), Positives = 149/196 (76%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSK R GKIVDG C SLTSS VR R +IP C+++E+F G E+ L GVY++ L
Sbjct: 136 VSKLRLGKIVDGHCLSLTSSFVRARRLDDPSIPCCNYFEEFMEEGVESALPRGVYNLDDL 195
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K GR +G CPYF+AR A++ A ++VYSYHYLLDPKIA ++SK+L+R SVVVFDEAHNID
Sbjct: 196 KAYGRRMGWCPYFVARHALLRADVIVYSYHYLLDPKIAELISKDLSRRSVVVFDEAHNID 255
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC++SLSV + +RTIE+ N+++L+ +KE KE D A L EY RLVEGLR+A+ R+
Sbjct: 256 NVCIESLSVTLKKRTIERCQENLESLQKFVKETKERDVAHLDREYKRLVEGLREAKHLRD 315
Query: 836 TDVVLANPVLPDEILQ 851
TD +LANPVLPD+IL+
Sbjct: 316 TDKILANPVLPDDILE 331
Score = 165 bits (418), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 95/121 (78%), Gaps = 1/121 (0%)
Query: 423 AMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
M + +D L V FPYE+IYPEQY YM++LK+ LDA+GHCLLEMPSGTGKT SLLSL++AY
Sbjct: 15 TMRIDVDGLSVIFPYEFIYPEQYYYMLQLKRTLDARGHCLLEMPSGTGKTASLLSLVIAY 74
Query: 483 MNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHS 541
+ A+P + KL+YCSRT+PEI KVVEEL L D Y K E +N+ GL +S+RKN+CIH
Sbjct: 75 VKAYPSQLEKLIYCSRTIPEISKVVEELRHLCDSYEKETGESLNIVGLAMSARKNMCIHP 134
Query: 542 E 542
E
Sbjct: 135 E 135
Score = 112 bits (281), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 93/154 (60%), Gaps = 12/154 (7%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FE RDD SVIRNYG LL++++ +VPDG+VCFFTSY+Y+E+
Sbjct: 491 CILP-LIVAKGNDQITMTSKFEARDDTSVIRNYGTLLLELSRIVPDGIVCFFTSYMYMEN 549
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKA 683
VA WY QGIID + K KLLFIETQD +++ + +GR L S + R K
Sbjct: 550 TVAFWYKQGIIDRIMKNKLLFIETQDIIETSLALQNYIKACENGRGAILLSVA---RGKV 606
Query: 684 GENIPVCDFYEKFDAVGREAPL--APGVYSITKL 715
E + DF D +GR + P VY+ +++
Sbjct: 607 SEGV---DFS---DHLGRAVVMLGVPYVYTESRI 634
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 83/130 (63%), Gaps = 18/130 (13%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADK----------- 864
ARL E LRD + +E D + + + L+ KTDYG+MIFADK
Sbjct: 637 ARL-EYLRDQFNIKENDFLTFDAMRQAAQCVGRALRNKTDYGLMIFADKAFRVLNDGTVL 695
Query: 865 -RFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSL 923
R++RSDKR KLPKWIQE L+ + +LS EEA+Q+S+RWLR MAQPFT+ D LG+++L+
Sbjct: 696 QRYSRSDKREKLPKWIQEQLSASNLDLSIEEALQISRRWLRTMAQPFTQNDQLGISMLNQ 755
Query: 924 DQLLEKEHAR 933
Q+ +++ R
Sbjct: 756 TQITDEQMKR 765
>gi|296234101|ref|XP_002762285.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit isoform 2 [Callithrix jacchus]
Length = 682
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/340 (59%), Positives = 253/340 (74%), Gaps = 44/340 (12%)
Query: 79 IIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEK 138
I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++
Sbjct: 121 ILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDR 180
Query: 139 AVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEV 198
GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQE
Sbjct: 181 CQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEA 240
Query: 199 VPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIF 258
VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 241 VPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--------------------- 279
Query: 259 STEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDF 318
L ++ +VCI+RKPLRFCAERL SLL TLEIT+L DF
Sbjct: 280 -----------------------LSGLAQRVCIQRKPLRFCAERLRSLLHTLEITDLADF 316
Query: 319 SSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTV 378
S L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F C+D+SLAIKPVF+RFQ+V
Sbjct: 317 SPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSV 376
Query: 379 VITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 377 IITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 416
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/118 (68%), Positives = 102/118 (86%)
Query: 734 IIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEK 793
I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++
Sbjct: 121 ILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDR 180
Query: 794 AVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 181 CQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 238
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 426 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 485
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 486 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 538
Score = 108 bits (270), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 70/99 (70%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 557 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 615
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 616 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 654
>gi|397493361|ref|XP_003817576.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit isoform 2 [Pan paniscus]
Length = 682
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/340 (59%), Positives = 253/340 (74%), Gaps = 44/340 (12%)
Query: 79 IIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEK 138
I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++
Sbjct: 121 ILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDR 180
Query: 139 AVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEV 198
GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQE
Sbjct: 181 CQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEA 240
Query: 199 VPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIF 258
VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 241 VPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--------------------- 279
Query: 259 STEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDF 318
L ++ +VCI+RKPLRFCAERL SLL TLEIT+L DF
Sbjct: 280 -----------------------LSGLAQRVCIQRKPLRFCAERLRSLLHTLEITDLADF 316
Query: 319 SSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTV 378
S L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F C+D+SLAIKPVF+RFQ+V
Sbjct: 317 SPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSV 376
Query: 379 VITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 377 IITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 416
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/118 (68%), Positives = 102/118 (86%)
Query: 734 IIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEK 793
I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++
Sbjct: 121 ILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDR 180
Query: 794 AVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 181 CQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 238
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 426 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 485
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 486 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 538
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 69/99 (69%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR DKR KL
Sbjct: 557 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKL 615
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 616 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 654
>gi|403299023|ref|XP_003940292.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit isoform 2 [Saimiri boliviensis boliviensis]
Length = 704
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/340 (59%), Positives = 253/340 (74%), Gaps = 44/340 (12%)
Query: 79 IIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEK 138
I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++
Sbjct: 143 ILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDR 202
Query: 139 AVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEV 198
GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQE
Sbjct: 203 CQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEA 262
Query: 199 VPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIF 258
VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 263 VPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--------------------- 301
Query: 259 STEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDF 318
L ++ +VCI+RKPLRFCAERL SLL TLEIT+L DF
Sbjct: 302 -----------------------LSGLAQRVCIQRKPLRFCAERLRSLLHTLEITDLADF 338
Query: 319 SSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTV 378
S L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F C+D+SLAIKPVF+RFQ+V
Sbjct: 339 SPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSV 398
Query: 379 VITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 399 IITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 438
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/118 (68%), Positives = 102/118 (86%)
Query: 734 IIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEK 793
I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++
Sbjct: 143 ILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDR 202
Query: 794 AVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 203 CQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 260
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 81/121 (66%), Positives = 99/121 (81%), Gaps = 1/121 (0%)
Query: 423 AMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
A L +D L V+FPY+YIYPEQ++YM ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 22 AARLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAY 81
Query: 483 MNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHS 541
A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH
Sbjct: 82 QRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHP 141
Query: 542 E 542
E
Sbjct: 142 E 142
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 448 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 507
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 508 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 560
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 70/99 (70%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 579 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 637
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 638 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 676
>gi|83405926|gb|AAI10523.1| ERCC2 protein [Homo sapiens]
Length = 682
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/340 (59%), Positives = 253/340 (74%), Gaps = 44/340 (12%)
Query: 79 IIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEK 138
I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++
Sbjct: 121 ILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDR 180
Query: 139 AVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEV 198
GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLP+E+LQE
Sbjct: 181 CQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPNEVLQEA 240
Query: 199 VPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIF 258
VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 241 VPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--------------------- 279
Query: 259 STEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDF 318
L ++ +VCI+RKPLRFCAERL SLL TLEIT+L DF
Sbjct: 280 -----------------------LSGLAQRVCIQRKPLRFCAERLRSLLHTLEITDLADF 316
Query: 319 SSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTV 378
S L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F C+D+SLAIKPVF+RFQ+V
Sbjct: 317 SPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSV 376
Query: 379 VITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 377 IITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 416
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/118 (67%), Positives = 102/118 (86%)
Query: 734 IIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEK 793
I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++
Sbjct: 121 ILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDR 180
Query: 794 AVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLP+E+LQ
Sbjct: 181 CQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPNEVLQ 238
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 426 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 485
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 486 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 538
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 69/99 (69%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR DKR KL
Sbjct: 557 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKL 615
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 616 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 654
>gi|395854142|ref|XP_003799557.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit isoform 2 [Otolemur garnettii]
Length = 682
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/340 (59%), Positives = 252/340 (74%), Gaps = 44/340 (12%)
Query: 79 IIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEK 138
I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RR +++
Sbjct: 121 ILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRILDR 180
Query: 139 AVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEV 198
GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQE
Sbjct: 181 CQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEA 240
Query: 199 VPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIF 258
VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 241 VPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--------------------- 279
Query: 259 STEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDF 318
L ++ +VCI+RKPLRFCAERL SLL TLEIT+L DF
Sbjct: 280 -----------------------LSGLAQRVCIQRKPLRFCAERLRSLLHTLEITDLADF 316
Query: 319 SSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTV 378
S L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+L+F C+D+SLAIKPVF+RFQ+V
Sbjct: 317 SPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSV 376
Query: 379 VITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 377 IITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 416
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/118 (67%), Positives = 101/118 (85%)
Query: 734 IIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEK 793
I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RR +++
Sbjct: 121 ILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRILDR 180
Query: 794 AVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 181 CQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 238
Score = 172 bits (436), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIIAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE+R+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 426 ISSKFESREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 485
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 486 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 538
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 69/99 (69%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR DKR KL
Sbjct: 557 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARVDKRGKL 615
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 616 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 654
>gi|324507092|gb|ADY43014.1| TFIIH basal transcription factor complex helicase XPD subunit,
partial [Ascaris suum]
Length = 761
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/414 (49%), Positives = 277/414 (66%), Gaps = 45/414 (10%)
Query: 5 RDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMG 64
R G VDG C LT+ VR + K ++P C F+EKFDA RE L GVY+++ L++ G
Sbjct: 125 RQGSAVDGACQRLTAGFVRAKRKLQPDLPACSFFEKFDA-QREVVLPAGVYNLSNLRKWG 183
Query: 65 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 124
+ G+CPYF+AR A I+VYSYHY+LDPKIA +VSK +R S VVFDEAHNIDNVC+
Sbjct: 184 HQKGVCPYFMARANADRANIIVYSYHYILDPKIAELVSKNFSRRSCVVFDEAHNIDNVCI 243
Query: 125 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVV 184
+S+SV + + T+EKA+ + L+ ++ +KE +S +L+ EY RLVEGLR + R D
Sbjct: 244 ESMSVSLTKSTVEKAMQKVALLDKHVQRLKEENSERLQNEYERLVEGLRQVEQDRANDET 303
Query: 185 LANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSK 244
LANPVLPD ILQE VPG+IRTA+HF+ FL+RFIEYLK R+R V+ ESPA+FL DI
Sbjct: 304 LANPVLPDSILQEAVPGSIRTAQHFINFLRRFIEYLKYRMRSTTVLVESPASFLFDI--- 360
Query: 245 PAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLA 304
QE ++ IER+PLRFC ER A
Sbjct: 361 ------------------------------QE-----------RMYIERRPLRFCTERFA 379
Query: 305 SLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDS 364
SL RTLE+ +++DF SLV++T+ ATLVSSY GF++I+EP +K+ + ++ C+D+
Sbjct: 380 SLARTLELADISDFHSLVLVTNFATLVSSYGPGFSLIIEPLDEKSGDAHSCTMHLNCMDA 439
Query: 365 SLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
S+AI+P+ RFQ+V+ITSGTLSPL+MYPKIL+F P +M S SMTLARPC+ P++
Sbjct: 440 SIAIRPILQRFQSVIITSGTLSPLEMYPKILDFDPAVMASLSMTLARPCIAPLI 493
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 102/199 (51%), Positives = 137/199 (68%), Gaps = 1/199 (0%)
Query: 653 SRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSI 712
+ SV+ R G VDG C LT+ VR + K ++P C F+EKFDA RE L GVY++
Sbjct: 118 NESVACLRQGSAVDGACQRLTAGFVRAKRKLQPDLPACSFFEKFDA-QREVVLPAGVYNL 176
Query: 713 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAH 772
+ L++ G + G+CPYF+AR A I+VYSYHY+LDPKIA +VSK +R S VVFDEAH
Sbjct: 177 SNLRKWGHQKGVCPYFMARANADRANIIVYSYHYILDPKIAELVSKNFSRRSCVVFDEAH 236
Query: 773 NIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS 832
NIDNVC++S+SV + + T+EKA+ + L+ ++ +KE +S +L+ EY RLVEGLR +
Sbjct: 237 NIDNVCIESMSVSLTKSTVEKAMQKVALLDKHVQRLKEENSERLQNEYERLVEGLRQVEQ 296
Query: 833 ARETDVVLANPVLPDEILQ 851
R D LANPVLPD ILQ
Sbjct: 297 DRANDETLANPVLPDSILQ 315
Score = 147 bits (370), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/122 (59%), Positives = 90/122 (73%), Gaps = 9/122 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + +D L V+FPY+YIYPEQ YM E+KK LDA+GH LLEMPSGTGKT SLLSL++AYM
Sbjct: 1 MKIDVDGLEVYFPYDYIYPEQVLYMEEVKKTLDAQGHALLEMPSGTGKTISLLSLVLAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN-----MTGLVLSSRKNLC 538
P + KL+YCSRT+PEIEK VEEL LF YY E++N + L +S+RKNLC
Sbjct: 61 LKFPDKLDKLIYCSRTIPEIEKCVEELRNLFKYY----EQVNGKRPALLALAISARKNLC 116
Query: 539 IH 540
I+
Sbjct: 117 IN 118
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 76/116 (65%), Gaps = 7/116 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ +E D + + + L+GKTDYG+MIFADKRFA+ DK KL
Sbjct: 634 ARL-EYLREHHGIKENDFLTFDAMRHAAQCVGRALRGKTDYGLMIFADKRFAKKDKMGKL 692
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEH 931
P+WIQEYLT NLS EEA ++RWL MAQPFT+ED LGVALL+ +LE E
Sbjct: 693 PRWIQEYLTPGNVNLSIEEAGMTARRWLPLMAQPFTKEDQLGVALLT-QNMLEGEQ 747
Score = 109 bits (272), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 84/125 (67%), Gaps = 6/125 (4%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P +V + + S FE+RDD +VIRNYG L++++A +VPDGVV FFTSY+Y+E+
Sbjct: 488 CIAP-LIVSKGNDQVAITSRFESRDDAAVIRNYGNLVLEVASIVPDGVVVFFTSYVYMEN 546
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHK 682
VV+ WYDQ IID L K KLLFIET DAL++ SV+ E+ + D GR L S + R K
Sbjct: 547 VVSIWYDQRIIDELMKHKLLFIETTDALET-SVALEKYVEACDSGRGAILFSVA---RGK 602
Query: 683 AGENI 687
E I
Sbjct: 603 VSEGI 607
>gi|308477366|ref|XP_003100897.1| hypothetical protein CRE_16215 [Caenorhabditis remanei]
gi|308264471|gb|EFP08424.1| hypothetical protein CRE_16215 [Caenorhabditis remanei]
Length = 789
Score = 421 bits (1082), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/418 (50%), Positives = 284/418 (67%), Gaps = 16/418 (3%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R G VD C LT+SSVR + K I CD++E F+A P+ GV+++ L
Sbjct: 121 VAALRFGNTVDSACQKLTASSVRAKRKENSEIEGCDYFENFEA--NSFPMQNGVWNLEDL 178
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+++GRE +CPYF AR AI A IVVYSYHY+LDPKIA +VSK+ +R SVVVFDEAHNID
Sbjct: 179 RQLGRERKICPYFTARNAINRAHIVVYSYHYILDPKIAELVSKDFSRKSVVVFDEAHNID 238
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++S+SV I+++ ++A+ +Q LEG + MK A+S KL+ EY +LVEGL+ A+ R
Sbjct: 239 NVCIESMSVAISQKNADRALQELQNLEGVVGRMKSANSEKLQSEYDKLVEGLKRAERERA 298
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D LANP +PD+IL+E VPGNIR A HF+ FLKRF+EY++ RLR Q+
Sbjct: 299 NDERLANPCIPDDILKEAVPGNIRQANHFLLFLKRFVEYVRHRLRTHQLFH--------- 349
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
P + IF + QV+ ESPA F+KDI ++CIER+P+RFCA
Sbjct: 350 -VDSPNSKQTNVGLLAIFHWSGSCFCSIYTFQVLIESPAAFMKDIQERMCIERRPMRFCA 408
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERLA+L+RTLEIT+ D +L +T + TLVS+Y+KGF++IVEP D + ++
Sbjct: 409 ERLANLVRTLEITDNGDVWALSQVTTMCTLVSTYSKGFSVIVEP-QDGSQMA---MITLS 464
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C D+S+AI+PV R Q+V+ITSGTLSPL+MYPKIL+F P ++ SF+MTLARPCL P+V
Sbjct: 465 CHDASIAIRPVLKRHQSVIITSGTLSPLEMYPKILDFDPAVVASFTMTLARPCLAPLV 522
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/196 (51%), Positives = 138/196 (70%), Gaps = 2/196 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
V+ R G VD C LT+SSVR + K I CD++E F+A P+ GV+++ L
Sbjct: 121 VAALRFGNTVDSACQKLTASSVRAKRKENSEIEGCDYFENFEA--NSFPMQNGVWNLEDL 178
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
+++GRE +CPYF AR AI A IVVYSYHY+LDPKIA +VSK+ +R SVVVFDEAHNID
Sbjct: 179 RQLGRERKICPYFTARNAINRAHIVVYSYHYILDPKIAELVSKDFSRKSVVVFDEAHNID 238
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC++S+SV I+++ ++A+ +Q LEG + MK A+S KL+ EY +LVEGL+ A+ R
Sbjct: 239 NVCIESMSVAISQKNADRALQELQNLEGVVGRMKSANSEKLQSEYDKLVEGLKRAERERA 298
Query: 836 TDVVLANPVLPDEILQ 851
D LANP +PD+IL+
Sbjct: 299 NDERLANPCIPDDILK 314
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/142 (54%), Positives = 101/142 (71%), Gaps = 9/142 (6%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L ID L V FPY+Y+YPEQ YM E+KKALDA GH LLEMPSGTGKT SLLSL++AYM
Sbjct: 1 MQLDIDGLKVLFPYDYVYPEQVLYMKEVKKALDANGHGLLEMPSGTGKTVSLLSLVLAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
++P + KL+YCSRT+PEIEK VEE+ L+DY+ K + + + +S+RKNLCI+
Sbjct: 61 ISYPDRLDKLVYCSRTIPEIEKCVEEMKVLYDYWEKETGQPVAKITVAMSARKNLCIN-- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
+ ++ +R +G VD AC
Sbjct: 119 ----EKVAALR-FGN-TVDSAC 134
Score = 110 bits (276), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 79/125 (63%), Gaps = 10/125 (8%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + L+ KTDYG+M+FADKRF+R+DKR KL
Sbjct: 663 ARL-EYLRDTFGIRENDFLTFDAMRHTAQCMGRALRSKTDYGLMVFADKRFSRNDKRGKL 721
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLS----LDQLLEKEH 931
P+W+QEYL TNLS +EA Q+++RWL MAQPF +E LGV+LL+ DQ + K
Sbjct: 722 PRWMQEYLEPASTNLSIDEAAQVARRWLTLMAQPFQKEHQLGVSLLNKEMVQDQQMMKRF 781
Query: 932 ARAEE 936
R E
Sbjct: 782 ERVVE 786
Score = 102 bits (255), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 78/124 (62%), Gaps = 4/124 (3%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P VV + + S FE R D++VIRNYG L++++A +VPDG+V FFTSYLY+E+
Sbjct: 517 CLAP-LVVARGNDQVAMTSRFEQRADVAVIRNYGNLVLEMASLVPDGMVVFFTSYLYMEN 575
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKA 683
V+ WY+Q IID L K KLLFIET DAL++ + ++ GR L S + R K
Sbjct: 576 VIGVWYEQHIIDELMKYKLLFIETNDALETSAALEKYVEACDSGRGAVLFSVA---RGKV 632
Query: 684 GENI 687
E I
Sbjct: 633 SEGI 636
>gi|440635897|gb|ELR05816.1| DNA repair helicase rad15 [Geomyces destructans 20631-21]
Length = 795
Score = 421 bits (1082), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/418 (49%), Positives = 276/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G IVD RC SLT+ V+D+ + GE++ +C ++E D + + GV+++ +
Sbjct: 120 VKREKSGAIVDARCRSLTAGFVKDKKENGEDVELCTYHENLDLLEPHDLIPNGVWTLDGI 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF +R+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNID
Sbjct: 180 MRYGEEHKQCPYFTSRRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I ++ KA Q LE + E+K+ D+ KL+ EYA+LVEGLR+A ARE
Sbjct: 240 NVCIESLSTDITEDSLRKATRGAQNLETKICEIKDTDAEKLQNEYAKLVEGLREADEARE 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D ++NP LPD++L+E VPGNIR AEHFV FLKRF+EYLKTR+RV+QV+ E+P +FL
Sbjct: 300 EDTFMSNPALPDDLLKEAVPGNIRRAEHFVAFLKRFVEYLKTRMRVRQVISETPLSFLA- 358
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IERKPLRFCA
Sbjct: 359 ----------------------HLKE------------TTF---------IERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EP+ VPNPVL+F
Sbjct: 376 ERLTSLVRTLELTNIEDYQPLQQVATFATLVATYEKGFLLILEPYESDTAEVPNPVLHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGTLSPL+MYPK+LNF V+ ++ MTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLNFTTVVQETYQMTLARRSFLPMI 493
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 92/197 (46%), Positives = 134/197 (68%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G IVD RC SLT+ V+D+ + GE++ +C ++E D + + GV+++
Sbjct: 119 SVKREKSGAIVDARCRSLTAGFVKDKKENGEDVELCTYHENLDLLEPHDLIPNGVWTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ G E CPYF +R+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNI
Sbjct: 179 IMRYGEEHKQCPYFTSRRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I ++ KA Q LE + E+K+ D+ KL+ EYA+LVEGLR+A AR
Sbjct: 239 DNVCIESLSTDITEDSLRKATRGAQNLETKICEIKDTDAEKLQNEYAKLVEGLREADEAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
E D ++NP LPD++L+
Sbjct: 299 EEDTFMSNPALPDDLLK 315
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/142 (54%), Positives = 92/142 (64%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM +LK+ LDA GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFNIDDLPVLFPYPRIYPEQYAYMCDLKRTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRT+ EIEK + EL L +Y + + GL L+SRKNLC+H
Sbjct: 61 QYYP-EHRKLIYCSRTMSEIEKALAELKALMNYRTEQLGRVEEFRGLGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 -------SVKREKSGAIVDARC 133
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 76/126 (60%), Gaps = 10/126 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYGIM+ AD+RF + KR++L
Sbjct: 634 ARL-EFLRETYRIRENDFLSFDAMRHASQCLGRVLRGKDDYGIMVLADRRFMK--KRAQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
P WI + D+ TNLS + AV +K++L+ +AQPF +ED G++ S+ L ++H E
Sbjct: 691 PSWINNAVMDSDTNLSIDMAVSSAKKFLKNIAQPFKQEDHEGISTWSVTDL--RKHQEKE 748
Query: 936 EEEVPR 941
+EE R
Sbjct: 749 DEEKIR 754
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R++ SV+RNYG LL + + + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 503 ISSGFQVRNEPSVVRNYGNLLTEFSKITPDGMVVFFPSYLYMESIISMWQGMGILDEVWK 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 563 YKLILVETPDAQET 576
>gi|425770095|gb|EKV08569.1| TFIIH complex helicase Rad3, putative [Penicillium digitatum Pd1]
gi|425771642|gb|EKV10079.1| TFIIH complex helicase Rad3, putative [Penicillium digitatum PHI26]
Length = 794
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/418 (48%), Positives = 279/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++ L
Sbjct: 120 VKREKSGTVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF AR+ + I++YSYHYLLDPKIA VS+EL++ +VVFDEAHNID
Sbjct: 180 ARYGEEHKQCPYFSARRMMPWCNIIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ ++ ++ KA LE ++EMK D KL+ EY++LVEGL++A+ ARE
Sbjct: 240 NVCIESLSIDLSEDSLRKATRGANNLERRIEEMKSTDEEKLKNEYSKLVEGLQEAEKARE 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D ++NPVLPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V + E+P +FL
Sbjct: 300 EDQFISNPVLPDDLLKEAVPGNIRRAEHFVSFLKRFIEYLKTRMKVTHTISETPPSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
T LKD++ IERKPLRFCA
Sbjct: 358 ---------------------------------------THLKDLTY---IERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ D+ L + ATLV++Y KGF +I+EPF +A TVPNP+L+F
Sbjct: 376 ERLTSLVRTLELVNIEDYQPLQEVATFATLVATYDKGFVLILEPFESEAATVPNPILHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGTLSPL+MYPK+L F V+ S+SMTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFTAVLQESYSMTLARRSFLPMI 493
Score = 200 bits (508), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 137/197 (69%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++
Sbjct: 119 SVKREKSGTVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L G E CPYF AR+ + I++YSYHYLLDPKIA VS+EL++ +VVFDEAHNI
Sbjct: 179 LARYGEEHKQCPYFSARRMMPWCNIIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ ++ ++ KA LE ++EMK D KL+ EY++LVEGL++A+ AR
Sbjct: 239 DNVCIESLSIDLSEDSLRKATRGANNLERRIEEMKSTDEEKLKNEYSKLVEGLQEAEKAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
E D ++NPVLPD++L+
Sbjct: 299 EEDQFISNPVLPDDLLK 315
Score = 147 bits (371), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/144 (56%), Positives = 93/144 (64%), Gaps = 14/144 (9%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK---HNEEINMTGLVLSSRKNLCIH 540
+P + KL+YCSRT+ EIEK + EL L ++ K H EE G L+SRKNLC+H
Sbjct: 61 QHYP-EHRKLIYCSRTMSEIEKALAELKALMEHRAKELGHEEEFRALG--LTSRKNLCLH 117
Query: 541 SEFETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 118 P--------SVKREKSGTVVDARC 133
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 72/123 (58%), Gaps = 8/123 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF R KR +L
Sbjct: 634 ARL-EFLRENYRIRENDFLSFDAIRHAAQCLGRVLRGKDDYGVMVLADRRFER--KRPQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + D+ TNLST+ AV +K +LR MAQPF +D G++ L + E R
Sbjct: 691 PKWINQAMLDSETNLSTDMAVSNAKNFLRTMAQPFKSKDQEGISTWGLADIERHEAKRRT 750
Query: 936 EEE 938
EEE
Sbjct: 751 EEE 753
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 49/72 (68%)
Query: 582 SVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRK 641
S F R+D V+RNYG L+ + A + PDGVV FF SYLY+ES+++ W GI+D + K
Sbjct: 505 SSFGIRNDPGVVRNYGSLVTEFARITPDGVVVFFPSYLYMESIISMWQGMGILDQIWNYK 564
Query: 642 LLFIETQDALDS 653
L+ +ET DA +S
Sbjct: 565 LILVETPDAQES 576
>gi|119495148|ref|XP_001264365.1| TFIIH complex helicase Rad3, putative [Neosartorya fischeri NRRL
181]
gi|119412527|gb|EAW22468.1| TFIIH complex helicase Rad3, putative [Neosartorya fischeri NRRL
181]
Length = 794
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/418 (48%), Positives = 280/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++ L
Sbjct: 120 VKREKSGTVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G E CPYF AR+ + + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNID
Sbjct: 180 LKYGEEHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+++LS+ I ++ KA LE + EMK +D+ KL+ EY++LVEGLR+A+ AR+
Sbjct: 240 NVCIEALSIDITEDSLRKATRGANNLERKISEMKSSDAEKLQNEYSKLVEGLREAEQARD 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANPVLPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V + E+P +FL
Sbjct: 300 EDQFIANPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPPSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
T +KD++ IERKPLRFCA
Sbjct: 358 ---------------------------------------THVKDLT---FIERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ D+ L + ATLVS+Y KGF +I+EPF + TVPNPVL+F
Sbjct: 376 ERLTSLVRTLELVNIEDYQPLQEVATFATLVSTYDKGFLLILEPFESETATVPNPVLHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGTLSPL+MYPK+L F V+ S++MTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFPTVLQESYTMTLARRSFLPMI 493
Score = 202 bits (515), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 139/197 (70%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++
Sbjct: 119 SVKREKSGTVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L + G E CPYF AR+ + + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNI
Sbjct: 179 LLKYGEEHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC+++LS+ I ++ KA LE + EMK +D+ KL+ EY++LVEGLR+A+ AR
Sbjct: 239 DNVCIEALSIDITEDSLRKATRGANNLERKISEMKSSDAEKLQNEYSKLVEGLREAEQAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANPVLPD++L+
Sbjct: 299 DEDQFIANPVLPDDLLK 315
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 93/144 (64%), Gaps = 14/144 (9%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M MIDDLPV FPY IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT SLLSLI+AY
Sbjct: 1 MKFMIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIIAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY---YIKHNEEINMTGLVLSSRKNLCIH 540
+P + KL+YCSRT+ EIEK + EL L + + + E+ G L+SRKNLC+H
Sbjct: 61 QHYP-EHRKLIYCSRTMSEIEKALAELKELMKFRTQQLGYTEDFRALG--LTSRKNLCLH 117
Query: 541 SEFETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 118 P--------SVKREKSGTVVDARC 133
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 76/128 (59%), Gaps = 16/128 (12%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYGIM+ AD+RF + KR++L
Sbjct: 634 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFQK--KRNQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSL--------DQLL 927
PKWI + + ++ TNLST+ AV +K +LR MAQPF +D G++ SL Q+L
Sbjct: 691 PKWISQAMLESETNLSTDMAVATAKNFLRTMAQPFKAKDQEGISTWSLADIERHREKQML 750
Query: 928 EKEHARAE 935
E+E R E
Sbjct: 751 EEERVRRE 758
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG ++++ + + PDG+V FF SYLY+ES+++ W GI+D++
Sbjct: 503 ISSSFQIRNDPGVVRNYGNIVLEFSRITPDGIVVFFPSYLYMESIISMWQGMGILDSIWN 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ +S
Sbjct: 563 YKLILVETPDSQES 576
>gi|70996012|ref|XP_752761.1| TFIIH complex helicase Rad3 [Aspergillus fumigatus Af293]
gi|66850396|gb|EAL90723.1| TFIIH complex helicase Rad3, putative [Aspergillus fumigatus Af293]
gi|159131515|gb|EDP56628.1| TFIIH complex helicase Rad3, putative [Aspergillus fumigatus A1163]
Length = 770
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/418 (48%), Positives = 280/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++ L
Sbjct: 96 VKREKSGTVVDARCRSLTAGFVKEKKERGEDVELCIYHENLDLLEPHNLVPPGVFTLDGL 155
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G E CPYF AR+ + + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNID
Sbjct: 156 LKYGEEHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 215
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+++LS+ I ++ KA LE + EMK +D+ KL+ EY++LVEGLR+A+ AR+
Sbjct: 216 NVCIEALSIDITEDSLRKATRGANNLERKISEMKSSDAEKLQNEYSKLVEGLREAEQARD 275
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANPVLPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V + E+P +FL
Sbjct: 276 EDQFIANPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPPSFL-- 333
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
T +KD++ IERKPLRFCA
Sbjct: 334 ---------------------------------------THVKDLT---FIERKPLRFCA 351
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ D+ L + ATLVS+Y KGF +I+EPF + TVPNPVL+F
Sbjct: 352 ERLTSLVRTLELINIEDYQPLQEVATFATLVSTYDKGFLLILEPFESETATVPNPVLHFT 411
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGTLSPL+MYPK+L F V+ S++MTLAR LPM+
Sbjct: 412 CLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFPTVLQESYTMTLARRSFLPMI 469
Score = 202 bits (514), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 139/197 (70%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++
Sbjct: 95 SVKREKSGTVVDARCRSLTAGFVKEKKERGEDVELCIYHENLDLLEPHNLVPPGVFTLDG 154
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L + G E CPYF AR+ + + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNI
Sbjct: 155 LLKYGEEHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNI 214
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC+++LS+ I ++ KA LE + EMK +D+ KL+ EY++LVEGLR+A+ AR
Sbjct: 215 DNVCIEALSIDITEDSLRKATRGANNLERKISEMKSSDAEKLQNEYSKLVEGLREAEQAR 274
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANPVLPD++L+
Sbjct: 275 DEDQFIANPVLPDDLLK 291
Score = 103 bits (256), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 74/120 (61%), Gaps = 14/120 (11%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M +LKK LDA GHC+LEMPSGTGKT SLLSLI+AY +P + KL+YCSRT+ EIEK +
Sbjct: 1 MCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIIAYQQHYP-EHRKLIYCSRTMSEIEKAL 59
Query: 508 EELARLFDY---YIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
EL L + + + E+ G L+SRKNLC+H SV R +VD C
Sbjct: 60 AELKELMKFRSQQLGYTEDFRALG--LTSRKNLCLHP--------SVKREKSGTVVDARC 109
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 76/128 (59%), Gaps = 16/128 (12%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYGIM+ AD+RF + KR++L
Sbjct: 610 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFQK--KRNQL 666
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSL--------DQLL 927
PKWI + + ++ TNLST+ AV +K +LR MAQPF +D G++ SL Q+L
Sbjct: 667 PKWISQAMLESETNLSTDMAVATAKNFLRTMAQPFKAKDQEGISTWSLADIERHREKQML 726
Query: 928 EKEHARAE 935
E+E R E
Sbjct: 727 EEERVRRE 734
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG ++++ + + PDG+V FF SYLY+ES+++ W GI+D++
Sbjct: 479 ISSSFQIRNDPGVVRNYGNIVLEFSRITPDGIVVFFPSYLYMESIISMWQGMGILDSIWN 538
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA +S
Sbjct: 539 YKLILVETPDAQES 552
>gi|169763188|ref|XP_001727494.1| DNA repair helicase rad15 [Aspergillus oryzae RIB40]
gi|83770522|dbj|BAE60655.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 794
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/418 (48%), Positives = 279/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G IVD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++ L
Sbjct: 120 VKREKSGTIVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF AR+ + +++YSYHYLLDPKIA VS+E ++ +VVFDEAHNID
Sbjct: 180 LKYGEDHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSREFSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ I ++ KA LE + EMK +D+ KL+ EY++LVEGLR+A+ ARE
Sbjct: 240 NVCIESLSIDITENSLRKATRGANNLERKINEMKSSDAEKLQSEYSKLVEGLREAEQARE 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D ++NPVLPD++L+E VPGNIR AEHF+ FLKRFIEYLKTR++V + E+P +FL
Sbjct: 300 EDQFISNPVLPDDLLKEAVPGNIRRAEHFISFLKRFIEYLKTRMKVTHTISETPPSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
T +KD++ IERKPLRFCA
Sbjct: 358 ---------------------------------------THVKDLTY---IERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ D+ L + ATLVS+Y KGF +I+EPF +A TVPNPVL+F
Sbjct: 376 ERLTSLVRTLELINIEDYQPLQEVATFATLVSTYDKGFLLILEPFESEAATVPNPVLHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVF+RF +V+ITSGTLSPL+MYPK+L F V+ S+SMTLAR LPMV
Sbjct: 436 CLDAAIAIKPVFERFSSVIITSGTLSPLEMYPKMLGFTTVMQESYSMTLARRSFLPMV 493
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 137/197 (69%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G IVD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++
Sbjct: 119 SVKREKSGTIVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L + G + CPYF AR+ + +++YSYHYLLDPKIA VS+E ++ +VVFDEAHNI
Sbjct: 179 LLKYGEDHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSREFSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ I ++ KA LE + EMK +D+ KL+ EY++LVEGLR+A+ AR
Sbjct: 239 DNVCIESLSIDITENSLRKATRGANNLERKINEMKSSDAEKLQSEYSKLVEGLREAEQAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
E D ++NPVLPD++L+
Sbjct: 299 EEDQFISNPVLPDDLLK 315
Score = 142 bits (358), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 92/144 (63%), Gaps = 14/144 (9%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY---YIKHNEEINMTGLVLSSRKNLCIH 540
+P + KL+YCSRT+ EIEK + EL L + + + E+ G L+SRKNLC+H
Sbjct: 61 MHYP-EHRKLIYCSRTMSEIEKALAELKALMKFRTQQLGYTEDFRALG--LTSRKNLCLH 117
Query: 541 SEFETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 118 P--------SVKREKSGTIVDARC 133
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 77/128 (60%), Gaps = 16/128 (12%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ ADKRF + KR++L
Sbjct: 634 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADKRFQK--KRTQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSL--------DQLL 927
PKWI + + ++ TNLST+ AV +K +LR MAQPF +D G++ SL Q+L
Sbjct: 691 PKWISQAMLESETNLSTDMAVATAKNFLRGMAQPFKAKDQDGISTWSLADLERHREKQML 750
Query: 928 EKEHARAE 935
E+E AR +
Sbjct: 751 EEERARRQ 758
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG ++++ + + PDG+V FF SYLY+ES+++ W GI+D++
Sbjct: 503 ISSSFQIRNDPGVVRNYGNIVLEFSRITPDGIVVFFPSYLYMESIISMWQGMGILDSIWN 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA +S
Sbjct: 563 YKLILVETPDAQES 576
>gi|115492105|ref|XP_001210680.1| DNA repair helicase RAD3 [Aspergillus terreus NIH2624]
gi|114197540|gb|EAU39240.1| DNA repair helicase RAD3 [Aspergillus terreus NIH2624]
Length = 790
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/418 (48%), Positives = 278/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++ L
Sbjct: 120 VKREKSGTVVDARCRSLTAGFVKEKKERGEDVELCTYHENLDLLEPHNLVPPGVFTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF AR+ + +++YSYHYLLDPKIA VS+E ++ +VVFDEAHNID
Sbjct: 180 IKYGEQHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSREFSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ I ++ KA LE + EMK +D+ KL+ EY +LVEGLR+A+ ARE
Sbjct: 240 NVCIESLSIDITEDSLRKATRGANNLERKITEMKSSDAEKLQNEYTKLVEGLREAEQARE 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D ++NPVLPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V + E+P +FL
Sbjct: 300 EDQFISNPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPPSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
T +KD++ IERKPLRFCA
Sbjct: 358 ---------------------------------------THVKDLTY---IERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ D+ L + ATLV++Y KGF +I+EPF +A TVPNP+L+F
Sbjct: 376 ERLTSLVRTLELINIEDYQPLQEVATFATLVATYDKGFLLILEPFESEAATVPNPILHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGTLSPL+MYPK+L F V+ S+SMTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFTTVMQESYSMTLARRSFLPMI 493
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 136/197 (69%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++
Sbjct: 119 SVKREKSGTVVDARCRSLTAGFVKEKKERGEDVELCTYHENLDLLEPHNLVPPGVFTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L + G + CPYF AR+ + +++YSYHYLLDPKIA VS+E ++ +VVFDEAHNI
Sbjct: 179 LIKYGEQHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSREFSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ I ++ KA LE + EMK +D+ KL+ EY +LVEGLR+A+ AR
Sbjct: 239 DNVCIESLSIDITEDSLRKATRGANNLERKITEMKSSDAEKLQNEYTKLVEGLREAEQAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
E D ++NPVLPD++L+
Sbjct: 299 EEDQFISNPVLPDDLLK 315
Score = 142 bits (358), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 92/144 (63%), Gaps = 14/144 (9%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK---HNEEINMTGLVLSSRKNLCIH 540
+P + KL+YCSRT+ EIEK + EL L + K + E+ G L+SRKNLC+H
Sbjct: 61 LHYP-EHRKLIYCSRTMSEIEKALAELKALMKFRAKELGYTEDFRALG--LTSRKNLCLH 117
Query: 541 SEFETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 118 P--------SVKREKSGTVVDARC 133
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 76/127 (59%), Gaps = 9/127 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KRS+L
Sbjct: 634 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFQK--KRSQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL-LEKEHARA 934
PKWI + + ++ TNLST+ AV +K +LR MAQPF +D G++ SL L +E +
Sbjct: 691 PKWISQAMLESETNLSTDMAVATAKNFLRTMAQPFKAKDQEGISTWSLADLERHREKQKV 750
Query: 935 EEEEVPR 941
EEE R
Sbjct: 751 EEERARR 757
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG ++++ + + PDGVV FF SYLY+ES+++ W GI+D++
Sbjct: 503 ISSSFQIRNDPGVVRNYGNIVLEFSRITPDGVVVFFPSYLYMESIISMWQGMGILDSIWN 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA +S
Sbjct: 563 YKLILVETPDAQES 576
>gi|440472803|gb|ELQ41640.1| DNA repair helicase RAD3 [Magnaporthe oryzae Y34]
gi|440484308|gb|ELQ64395.1| DNA repair helicase RAD3 [Magnaporthe oryzae P131]
Length = 805
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/418 (47%), Positives = 282/418 (67%), Gaps = 24/418 (5%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G IVD RC LT+ V+++ + GE++ +C +++ D + + GV+++ L
Sbjct: 110 VKREKSGAIVDARCRGLTAGFVKEKKEKGEDVELCVYHDNLDLLEPHNLIPNGVWTLEGL 169
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF +R+ + + +++YSYHYLLDPKIA VSKEL+R S++VFDEAHNID
Sbjct: 170 LRYGEEHKQCPYFTSRRMMQYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNID 229
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I ++ KA LE + EM+E D +L +EY +LVEGLR+A AR+
Sbjct: 230 NVCIESLSTDITEDSLRKASRGAMNLEKRINEMRETDQNQLEDEYRKLVEGLREADEARQ 289
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D ++NPVLPD++L+E VPGNIR AEHFV FLKRFIEYLK
Sbjct: 290 EDAFMSNPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKA------------------ 331
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ S+ S+ Y Y F ++TR++V +V+ E+P +FL + IE+KPLRFCA
Sbjct: 332 -----SNSLSSQIYVY-FQLTLLIQTRMKVLEVISETPPSFLAHLKEYTFIEKKPLRFCA 385
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ DF L + ATLV++Y KGF +++EP+ + +PNPVL+F
Sbjct: 386 ERLTSLVRTLELTNIEDFQPLQEVATFATLVATYDKGFLLLLEPYESEKSQIPNPVLHFT 445
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVF+RF+TV+ITSGTLSPL+MYPK+L F V+ S++MTLAR LPM+
Sbjct: 446 CLDAAIAIKPVFERFKTVIITSGTLSPLEMYPKMLGFDAVVQESYAMTLARRSFLPMI 503
Score = 196 bits (499), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 133/197 (67%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G IVD RC LT+ V+++ + GE++ +C +++ D + + GV+++
Sbjct: 109 SVKREKSGAIVDARCRGLTAGFVKEKKEKGEDVELCVYHDNLDLLEPHNLIPNGVWTLEG 168
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L G E CPYF +R+ + + +++YSYHYLLDPKIA VSKEL+R S++VFDEAHNI
Sbjct: 169 LLRYGEEHKQCPYFTSRRMMQYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNI 228
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I ++ KA LE + EM+E D +L +EY +LVEGLR+A AR
Sbjct: 229 DNVCIESLSTDITEDSLRKASRGAMNLEKRINEMRETDQNQLEDEYRKLVEGLREADEAR 288
Query: 835 ETDVVLANPVLPDEILQ 851
+ D ++NPVLPD++L+
Sbjct: 289 QEDAFMSNPVLPDDLLK 305
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 82/142 (57%), Gaps = 20/142 (14%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPE LD G+C+LEMPSGTGKT +LLSLIVAY
Sbjct: 1 MLFYIDDLPVIFPYPRIYPE----------TLDVGGNCVLEMPSGTGKTATLLSLIVAYQ 50
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRT+ EIEK + EL L Y +E + GL L+SRKNLC+H
Sbjct: 51 QHYP-EHRKLIYCSRTMSEIEKALAELKNLMKYRAGELGKEEDFRGLGLTSRKNLCLHP- 108
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 109 -------SVKREKSGAIVDARC 123
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 76/124 (61%), Gaps = 9/124 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYGIM+ AD+RF + KR +L
Sbjct: 644 ARL-EFLRETYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFPK--KRPQL 700
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + L ++ N+ST+ AV ++++L+ MAQPF ED GV+ +++ L+K A+ E
Sbjct: 701 PKWINQALAESDVNMSTDMAVSAARKFLKSMAQPFRPEDQDGVSRWTIED-LKKHQAKVE 759
Query: 936 EEEV 939
+ +
Sbjct: 760 NDMI 763
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 51/74 (68%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F R+D +V+RNYGQLL + A + PDG+V FF SY Y+ES+++ W I+D + K
Sbjct: 513 ISSSFAVRNDPAVVRNYGQLLTEFAKITPDGMVVFFPSYFYMESIISMWQGMKILDEIWK 572
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 573 YKLILVETPDAQET 586
>gi|358370846|dbj|GAA87456.1| DNA repair helicase RAD3 [Aspergillus kawachii IFO 4308]
Length = 801
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/418 (49%), Positives = 278/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++ L
Sbjct: 120 VKREKSGAVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDDL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF AR+ + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNID
Sbjct: 180 LRYGEEHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ I ++ KA LE + EMK +D+ KL+ EY++LVEGL+ A+ ARE
Sbjct: 240 NVCIESLSIDITEDSLRKATRGANNLERKINEMKTSDAEKLQNEYSKLVEGLQAAEQARE 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D ++NPVLPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V + E+P +FL
Sbjct: 300 EDQFISNPVLPDDLLKEAVPGNIRRAEHFVSFLKRFIEYLKTRMKVMHTISETPPSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
T +KD++ IERKPLRFCA
Sbjct: 358 ---------------------------------------THVKDLTY---IERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ D+ L + ATLV++Y KGF +I+EPF +A TVPNPVL+F
Sbjct: 376 ERLTSLVRTLELINIEDYQPLQEVATFATLVATYEKGFLLILEPFESEAATVPNPVLHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGTLSPL+MYPK+L F V+ S+SMTLAR LPMV
Sbjct: 436 CLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFNAVMQESYSMTLARRSFLPMV 493
Score = 199 bits (505), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 136/197 (69%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++
Sbjct: 119 SVKREKSGAVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDD 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L G E CPYF AR+ + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNI
Sbjct: 179 LLRYGEEHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ I ++ KA LE + EMK +D+ KL+ EY++LVEGL+ A+ AR
Sbjct: 239 DNVCIESLSIDITEDSLRKATRGANNLERKINEMKTSDAEKLQNEYSKLVEGLQAAEQAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
E D ++NPVLPD++L+
Sbjct: 299 EEDQFISNPVLPDDLLK 315
Score = 146 bits (368), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 92/144 (63%), Gaps = 14/144 (9%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK---HNEEINMTGLVLSSRKNLCIH 540
+P + KL+YCSRT+ EIEK + EL L + K H E+ G L+SRKNLC+H
Sbjct: 61 QHYP-EHRKLIYCSRTMSEIEKALAELKALMKFRAKELGHTEDFRALG--LTSRKNLCLH 117
Query: 541 SEFETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 118 P--------SVKREKSGAVVDARC 133
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 74/127 (58%), Gaps = 9/127 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR++L
Sbjct: 634 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFQK--KRNQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSL-DQLLEKEHARA 934
PKWI + + ++ TNLST+ A +K +LR MAQPF D G++ SL D +E +
Sbjct: 691 PKWINQAMLESETNLSTDMAAATAKNFLRTMAQPFKARDQEGISTWSLADIERHREKQKL 750
Query: 935 EEEEVPR 941
EEE R
Sbjct: 751 EEERAQR 757
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG L+++ + + PDGVV FF SYLY+ES+++ W GI+D++
Sbjct: 503 ISSSFQIRNDPGVVRNYGNLVLEFSRITPDGVVVFFPSYLYMESIISMWQGMGILDSIWN 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA +S
Sbjct: 563 YKLILVETPDAQES 576
>gi|238489069|ref|XP_002375772.1| TFIIH complex helicase Rad3, putative [Aspergillus flavus NRRL3357]
gi|220698160|gb|EED54500.1| TFIIH complex helicase Rad3, putative [Aspergillus flavus NRRL3357]
gi|391869618|gb|EIT78813.1| RNA polymerase II transcription initiation [Aspergillus oryzae
3.042]
Length = 794
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/418 (48%), Positives = 279/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G IVD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++ L
Sbjct: 120 VKREKSGTIVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF AR+ + +++YSYHYLLDPKIA VS+E ++ +VVFDEAHNID
Sbjct: 180 LKYGEDHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSREFSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ I ++ KA LE + EMK +D+ KL+ EY++LVEGLR+A+ ARE
Sbjct: 240 NVCIESLSIDITEDSLRKATRGANNLERKINEMKSSDAEKLQSEYSKLVEGLREAEQARE 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D ++NPVLPD++L+E VPGNIR AEHF+ FLKRFIEYLKTR++V + E+P +FL
Sbjct: 300 EDQFISNPVLPDDLLKEAVPGNIRRAEHFISFLKRFIEYLKTRMKVTHTISETPPSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
T +KD++ IERKPLRFCA
Sbjct: 358 ---------------------------------------THVKDLTY---IERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ D+ L + ATLVS+Y KGF +I+EPF +A TVPNPVL+F
Sbjct: 376 ERLTSLVRTLELINIEDYQPLQEVATFATLVSTYDKGFLLILEPFESEAATVPNPVLHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVF+RF +V+ITSGTLSPL+MYPK+L F V+ S+SMTLAR LPMV
Sbjct: 436 CLDAAIAIKPVFERFSSVIITSGTLSPLEMYPKMLGFTTVMQESYSMTLARRSFLPMV 493
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 137/197 (69%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G IVD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++
Sbjct: 119 SVKREKSGTIVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L + G + CPYF AR+ + +++YSYHYLLDPKIA VS+E ++ +VVFDEAHNI
Sbjct: 179 LLKYGEDHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSREFSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ I ++ KA LE + EMK +D+ KL+ EY++LVEGLR+A+ AR
Sbjct: 239 DNVCIESLSIDITEDSLRKATRGANNLERKINEMKSSDAEKLQSEYSKLVEGLREAEQAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
E D ++NPVLPD++L+
Sbjct: 299 EEDQFISNPVLPDDLLK 315
Score = 142 bits (358), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 92/144 (63%), Gaps = 14/144 (9%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY---YIKHNEEINMTGLVLSSRKNLCIH 540
+P + KL+YCSRT+ EIEK + EL L + + + E+ G L+SRKNLC+H
Sbjct: 61 MHYP-EHRKLIYCSRTMSEIEKALAELKALMKFRTQQLGYTEDFRALG--LTSRKNLCLH 117
Query: 541 SEFETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 118 P--------SVKREKSGTIVDARC 133
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 77/128 (60%), Gaps = 16/128 (12%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ ADKRF + KR++L
Sbjct: 634 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADKRFQK--KRTQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSL--------DQLL 927
PKWI + + ++ TNLST+ AV +K +LR MAQPF +D G++ SL Q+L
Sbjct: 691 PKWISQAMLESETNLSTDMAVATAKNFLRGMAQPFKAKDQDGISTWSLADLERHREKQML 750
Query: 928 EKEHARAE 935
E+E AR +
Sbjct: 751 EEERARRQ 758
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG ++++ + + PDG+V FF SYLY+ES+++ W GI+D++
Sbjct: 503 ISSSFQIRNDPGVVRNYGNIVLEFSRITPDGIVVFFPSYLYMESIISMWQGMGILDSIWN 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA +S
Sbjct: 563 YKLILVETPDAQES 576
>gi|358057423|dbj|GAA96772.1| hypothetical protein E5Q_03443 [Mixia osmundae IAM 14324]
Length = 797
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/419 (47%), Positives = 282/419 (67%), Gaps = 45/419 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITK 59
+S+E+ GK+ D +C LTS+ V ++ +A ++ +C+F+E + L P VY++
Sbjct: 120 ISREKKGKVADAKCRDLTSAWVCEKGRADPGSVELCEFHENLGQLEPGTQLPPAVYTLED 179
Query: 60 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
+K G + G+CPYF R+ ++HA +V+YS+HYLLDPK+A VSKE+++ ++VVFDEAHNI
Sbjct: 180 VKAYGEQQGICPYFAVRRMLVHASVVIYSFHYLLDPKVAEQVSKEMSKDAIVVFDEAHNI 239
Query: 120 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 179
DNVC++SLS+ + R ++ A ++ L +KE+++ D+ KL++EYARLVEGL+ A++ +
Sbjct: 240 DNVCIESLSIDLTRPMLDSAARSVTALTDKIKEIRQTDATKLQDEYARLVEGLQGAEADQ 299
Query: 180 ETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLK 239
+ + + NPVLPD+IL E VPGNIR AEHFV FL RF+EYLKTR+RV VV E PA+FL+
Sbjct: 300 DENAFMGNPVLPDDILNEAVPGNIRRAEHFVAFLARFVEYLKTRMRVLHVVAEKPASFLQ 359
Query: 240 DISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFC 299
LKDI+ IE+KPLRFC
Sbjct: 360 -----------------------------------------HLKDIT---FIEKKPLRFC 375
Query: 300 AERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYF 359
AERL SL+RTLE+T + +FS+L + ATLV++Y KGF +I+EPF + TVPNP+ +
Sbjct: 376 AERLTSLVRTLELTRIDEFSALSKVASFATLVATYDKGFLLILEPFETENATVPNPIFHL 435
Query: 360 CCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CCLD+SLAIKPVFDRF +VVITSGT+SPL+MYPK+L F + S++MTL R C LP+V
Sbjct: 436 CCLDASLAIKPVFDRFSSVVITSGTISPLEMYPKMLQFTATVQESYAMTLTRNCFLPLV 494
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 85/198 (42%), Positives = 141/198 (71%), Gaps = 1/198 (0%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSIT 713
++S+E+ GK+ D +C LTS+ V ++ +A ++ +C+F+E + L P VY++
Sbjct: 119 TISREKKGKVADAKCRDLTSAWVCEKGRADPGSVELCEFHENLGQLEPGTQLPPAVYTLE 178
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
+K G + G+CPYF R+ ++HA +V+YS+HYLLDPK+A VSKE+++ ++VVFDEAHN
Sbjct: 179 DVKAYGEQQGICPYFAVRRMLVHASVVIYSFHYLLDPKVAEQVSKEMSKDAIVVFDEAHN 238
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC++SLS+ + R ++ A ++ L +KE+++ D+ KL++EYARLVEGL+ A++
Sbjct: 239 IDNVCIESLSIDLTRPMLDSAARSVTALTDKIKEIRQTDATKLQDEYARLVEGLQGAEAD 298
Query: 834 RETDVVLANPVLPDEILQ 851
++ + + NPVLPD+IL
Sbjct: 299 QDENAFMGNPVLPDDILN 316
Score = 144 bits (363), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 85/118 (72%), Gaps = 2/118 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID LPV FPY+ IYPEQYAY+ +LK+ LDA G+C+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFFIDQLPVIFPYDRIYPEQYAYVCDLKRTLDAGGNCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN-EEINMTGLVLSSRKNLCIH 540
+P + KL+YCSRTVPEIEK + EL RL +Y + L LSSRKNLCIH
Sbjct: 61 QHYP-ERRKLVYCSRTVPEIEKALAELKRLMEYRRAAGCNDDGFMALGLSSRKNLCIH 117
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 79/118 (66%), Gaps = 7/118 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GKTDYG+M+FAD+RFA++DKR+KL
Sbjct: 635 ARL-EFLRDEHRIRENDYLTFDAMRHAAQCVGRVLRGKTDYGLMVFADRRFAKADKRAKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHAR 933
PKWI Y+TD +NLST+ A+ +SK +LRQMAQPF +D ++L L + ++ AR
Sbjct: 694 PKWINHYITDTASNLSTDMALVMSKNFLRQMAQPF-EQDTQHISLWDLSDVKARQQAR 750
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 73/109 (66%), Gaps = 5/109 (4%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +L++ A VPDG+VCFF SYLY+ES+VA+W+D GI++ K
Sbjct: 504 ISSRFEVRNDPAVVRNFGTILIEYAKAVPDGMVCFFPSYLYMESIVAAWHDMGILNEAWK 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENI 687
KL+F+ET DA ++ SV+ E + D GR L S + R K E I
Sbjct: 564 HKLIFVETPDAAET-SVALENYRRACDNGRGAVLLSVA---RGKVSEGI 608
>gi|170591680|ref|XP_001900598.1| probable DNA helicase ERCC2/XPD - southern platyfish [Brugia
malayi]
gi|158592210|gb|EDP30812.1| probable DNA helicase ERCC2/XPD - southern platyfish, putative
[Brugia malayi]
Length = 763
Score = 417 bits (1073), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/418 (49%), Positives = 278/418 (66%), Gaps = 45/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS R G +VDG C LT+S VR + + ++P C F+EK D ++ GVY++ L
Sbjct: 116 VSSLRQGSLVDGACQKLTASFVRAKRRLRPDLPCCAFFEKLDE-QKDFNYPDGVYNLQNL 174
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+++G++ G+CPYFL+R + A IVVYSYHY+LDPKIA +VSK +R S VVFDEAHNID
Sbjct: 175 RKLGQQKGICPYFLSRNVVDRAHIVVYSYHYILDPKIAELVSKNFSRHSCVVFDEAHNID 234
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++S+SV + + T+EKA + LE ++ ++E +S +LR EY RLVEGLR + R
Sbjct: 235 NVCIESMSVSLTKTTVEKATQKLGILEEHVQRLREENSEQLRVEYDRLVEGLRRIEEERT 294
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +LANPVLPD IL+E VPG IR A HF+ FL+RF EYLK R+R + V+ ESPA FL+D
Sbjct: 295 NDQILANPVLPDMILKEAVPGTIRNALHFISFLRRFNEYLKHRMRTKTVLIESPAAFLRD 354
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
I+ + I+R+PLRFCA
Sbjct: 355 --------------------------------------------INDLMHIDRRPLRFCA 370
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ER ASL RTLE+ +++DFSSLV+IT+ ATLVS+Y +GF I++EP +K+ T + L+
Sbjct: 371 ERFASLTRTLELADISDFSSLVLITNFATLVSTYARGFTIVIEPLDEKSGTSHSCTLHLS 430
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+S+AI+P+F R+ TVVITSGTLSPLDMYPKIL+F P IM S SMTLARPC+ P++
Sbjct: 431 CMDASVAIRPIFQRYHTVVITSGTLSPLDMYPKILDFDPAIMASLSMTLARPCIAPLI 488
Score = 206 bits (524), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 99/199 (49%), Positives = 138/199 (69%), Gaps = 1/199 (0%)
Query: 653 SRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSI 712
+ SVS R G +VDG C LT+S VR + + ++P C F+EK D ++ GVY++
Sbjct: 113 NESVSSLRQGSLVDGACQKLTASFVRAKRRLRPDLPCCAFFEKLDE-QKDFNYPDGVYNL 171
Query: 713 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAH 772
L+++G++ G+CPYFL+R + A IVVYSYHY+LDPKIA +VSK +R S VVFDEAH
Sbjct: 172 QNLRKLGQQKGICPYFLSRNVVDRAHIVVYSYHYILDPKIAELVSKNFSRHSCVVFDEAH 231
Query: 773 NIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS 832
NIDNVC++S+SV + + T+EKA + LE ++ ++E +S +LR EY RLVEGLR +
Sbjct: 232 NIDNVCIESMSVSLTKTTVEKATQKLGILEEHVQRLREENSEQLRVEYDRLVEGLRRIEE 291
Query: 833 ARETDVVLANPVLPDEILQ 851
R D +LANPVLPD IL+
Sbjct: 292 ERTNDQILANPVLPDMILK 310
Score = 146 bits (368), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 86/179 (48%), Positives = 108/179 (60%), Gaps = 22/179 (12%)
Query: 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLL 494
FPY+YIYPEQ YM ELKK LDAKGHCLLEMPSGTGKT SLLSL++AYM P + KL+
Sbjct: 7 FPYDYIYPEQILYMSELKKTLDAKGHCLLEMPSGTGKTVSLLSLVIAYMLRFPDHLDKLV 66
Query: 495 YCSRTVPEIEKVVEELARLFDYYIK-HNEEINMTGLVLSSRKNLCIHSEFETRDDISVIR 553
YCSRT+PEIEK VEEL LF YY + + ++ + LS+RKNLCI+ + +S +R
Sbjct: 67 YCSRTIPEIEKCVEELRNLFKYYEQCDGKPPSLFAVALSARKNLCIN------ESVSSLR 120
Query: 554 NYGQLLVDIAC-------------VVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQL 599
LVD AC + PD C F L + F D + ++N +L
Sbjct: 121 QGS--LVDGACQKLTASFVRAKRRLRPDLPCCAFFEKLDEQKDFNYPDGVYNLQNLRKL 177
Score = 108 bits (271), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 76/98 (77%), Gaps = 3/98 (3%)
Query: 565 VVPDGVVCFFTS--YLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLE 622
+V G V + S + + S FE+R+D +VIRNYG L++++A +VPDGVV FFTSYLY+E
Sbjct: 488 IVSKGSVAYAHSNDQVAMTSRFESREDAAVIRNYGSLVLELASLVPDGVVVFFTSYLYME 547
Query: 623 SVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKER 660
+V+++WYDQGIID L K KLLFIET DAL++ S++ E+
Sbjct: 548 NVISTWYDQGIIDELLKYKLLFIETTDALET-SIALEK 584
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 76/115 (66%), Gaps = 6/115 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + L+GK+DYG+M+FADKRF+R DK KL
Sbjct: 636 ARL-EYLREQLGIRENDFLTFDAMRQAAQCMGRALRGKSDYGLMVFADKRFSRKDKMGKL 694
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKE 930
P+WIQEY+T NLS EEAV ++++W MAQ FT+E LG++LL+ + L EKE
Sbjct: 695 PRWIQEYITPGNVNLSIEEAVIIARKWFPLMAQSFTKEHQLGISLLTEEMLREKE 749
>gi|303317606|ref|XP_003068805.1| DNA repair helicase rad15 , putative [Coccidioides posadasii C735
delta SOWgp]
gi|240108486|gb|EER26660.1| DNA repair helicase rad15 , putative [Coccidioides posadasii C735
delta SOWgp]
gi|320038802|gb|EFW20737.1| DNA repair helicase RAD3 [Coccidioides posadasii str. Silveira]
Length = 795
Score = 417 bits (1073), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/418 (49%), Positives = 278/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+S V++R + GE++ +C ++E D + + PGV+++ L
Sbjct: 120 VRREKSGTVVDARCRSLTASFVKERKEKGEDVELCLYHENLDLLEPSNLVPPGVFTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G + CPYF AR+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNID
Sbjct: 180 IRYGEQHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ I ++ KA L + EMK +D+AKL++EY +LVEGLR+A ARE
Sbjct: 240 NVCIESLSIDITEDSLRKAGRGANNLGHKIDEMKRSDAAKLQKEYEKLVEGLREADQARE 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D ++ANP LPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V + E+P +FL
Sbjct: 300 EDQLMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLHAISETPLSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ LKD++ IERKPLRFCA
Sbjct: 358 ---------------------------------------SHLKDLTY---IERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ ++ L I ATLVS+Y KGF +I+EPF TVPNPVL+F
Sbjct: 376 ERLTSLVRTLELMNIEEYRPLQEIATFATLVSTYEKGFLLILEPFESDTATVPNPVLHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVF+RF +V+ITSGTLSPL+MYPK+L FQ V+ S+SMTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFERFGSVIITSGTLSPLEMYPKMLGFQTVLQESYSMTLARRSFLPMI 493
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/197 (47%), Positives = 137/197 (69%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+S V++R + GE++ +C ++E D + + PGV+++
Sbjct: 119 SVRREKSGTVVDARCRSLTASFVKERKEKGEDVELCLYHENLDLLEPSNLVPPGVFTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L G + CPYF AR+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNI
Sbjct: 179 LIRYGEQHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ I ++ KA L + EMK +D+AKL++EY +LVEGLR+A AR
Sbjct: 239 DNVCIESLSIDITEDSLRKAGRGANNLGHKIDEMKRSDAAKLQKEYEKLVEGLREADQAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
E D ++ANP LPD++L+
Sbjct: 299 EEDQLMANPALPDDLLK 315
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/144 (52%), Positives = 90/144 (62%), Gaps = 14/144 (9%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAY+ +LKK LD GHC+LEMPSGTGKT SLLSLI+AY
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYICDLKKTLDVGGHCVLEMPSGTGKTVSLLSLIIAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY---YIKHNEEINMTGLVLSSRKNLCIH 540
+P KL+YCSRT+ EIEK + EL L Y + + E+ G L+SRKNLC+H
Sbjct: 61 QHYP-SHRKLIYCSRTMSEIEKALTELRELMKYREQQLGYTEDFRALG--LTSRKNLCLH 117
Query: 541 SEFETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 118 P--------SVRREKSGTVVDARC 133
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 64/92 (69%), Gaps = 5/92 (5%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYGIM+ AD+RF + KR++LPKWI + + ++ TNLST+ AV +K +LR MAQ
Sbjct: 666 VLRGKDDYGIMVLADRRFQK--KRNQLPKWISQNILESETNLSTDMAVATAKSFLRTMAQ 723
Query: 909 PFTREDMLGVALLSLDQL---LEKEHARAEEE 937
PF +D G++ SL L LEK+ AE++
Sbjct: 724 PFKAKDQEGISTWSLADLERHLEKQKGEAEKK 755
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG LL++ + + PDG+V FF SYLY+ES+++ W GI+D++
Sbjct: 503 ISSAFKIRNDPGVVRNYGNLLLEFSRITPDGIVVFFPSYLYMESIISMWQGMGILDSIWN 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ +S
Sbjct: 563 YKLILVETPDSQES 576
>gi|392870657|gb|EAS32475.2| DNA repair helicase rad15 [Coccidioides immitis RS]
Length = 795
Score = 417 bits (1073), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/418 (49%), Positives = 278/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+S V++R + GE++ +C ++E D + + PGV+++ L
Sbjct: 120 VRREKSGTVVDARCRSLTASFVKERKEKGEDVELCLYHENLDLLEPSNLVPPGVFTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G + CPYF AR+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNID
Sbjct: 180 IRYGEQHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ I ++ KA L + EMK +D+AKL++EY +LVEGLR+A ARE
Sbjct: 240 NVCIESLSIDITEDSLRKAGRGANNLGHKIDEMKRSDAAKLQKEYEKLVEGLREADQARE 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D ++ANP LPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V + E+P +FL
Sbjct: 300 EDQLMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLHAISETPLSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ LKD++ IERKPLRFCA
Sbjct: 358 ---------------------------------------SHLKDLTY---IERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ ++ L I ATLVS+Y KGF +I+EPF TVPNPVL+F
Sbjct: 376 ERLTSLVRTLELMNIEEYRPLQEIATFATLVSTYEKGFLLILEPFESDTATVPNPVLHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVF+RF +V+ITSGTLSPL+MYPK+L FQ V+ S+SMTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFERFGSVIITSGTLSPLEMYPKMLGFQTVLQESYSMTLARRSFLPMI 493
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/197 (47%), Positives = 137/197 (69%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+S V++R + GE++ +C ++E D + + PGV+++
Sbjct: 119 SVRREKSGTVVDARCRSLTASFVKERKEKGEDVELCLYHENLDLLEPSNLVPPGVFTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L G + CPYF AR+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNI
Sbjct: 179 LIRYGEQHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ I ++ KA L + EMK +D+AKL++EY +LVEGLR+A AR
Sbjct: 239 DNVCIESLSIDITEDSLRKAGRGANNLGHKIDEMKRSDAAKLQKEYEKLVEGLREADQAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
E D ++ANP LPD++L+
Sbjct: 299 EEDQLMANPALPDDLLK 315
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/144 (52%), Positives = 90/144 (62%), Gaps = 14/144 (9%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAY+ +LKK LD GHC+LEMPSGTGKT SLLSLI+AY
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYICDLKKTLDVGGHCVLEMPSGTGKTVSLLSLIIAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY---YIKHNEEINMTGLVLSSRKNLCIH 540
+P KL+YCSRT+ EIEK + EL L Y + + E+ G L+SRKNLC+H
Sbjct: 61 QHYP-SHRKLIYCSRTMSEIEKALTELRELMKYREQQLGYTEDFRALG--LTSRKNLCLH 117
Query: 541 SEFETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 118 P--------SVRREKSGTVVDARC 133
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 64/92 (69%), Gaps = 5/92 (5%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYGIM+ AD+RF + KR++LPKWI + + ++ TNLST+ AV +K +LR MAQ
Sbjct: 666 VLRGKDDYGIMVLADRRFQK--KRNQLPKWISQNILESETNLSTDMAVATAKSFLRTMAQ 723
Query: 909 PFTREDMLGVALLSLDQL---LEKEHARAEEE 937
PF +D G++ SL L LEK+ AE++
Sbjct: 724 PFKAKDQEGISTWSLADLERHLEKQKGEAEKK 755
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG LL++ + + PDG+V FF SYLY+ES+++ W GI+D++
Sbjct: 503 ISSAFKIRNDPGVVRNYGNLLLEFSRITPDGIVVFFPSYLYMESIISMWQGMGILDSIWN 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ +S
Sbjct: 563 YKLILVETPDSQES 576
>gi|255941534|ref|XP_002561536.1| Pc16g12370 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586159|emb|CAP93907.1| Pc16g12370 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 795
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/418 (48%), Positives = 279/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++ L
Sbjct: 120 VKREKSGTVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF AR+ + I++YSYHYLLDPKIA VS+EL++ +VVFDEAHNID
Sbjct: 180 SRYGEEHKQCPYFSARRMMPWCNIIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ ++ ++ KA LE +++MK D KL+ EY++LVEGL++A+ AR+
Sbjct: 240 NVCIESLSIDLSEDSLRKATRGANNLERRIEDMKSTDEEKLKNEYSKLVEGLQEAEKARD 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D ++NPVLPD++L+E VPGNIR AEHF+ FLKRFIEYLKTR++V + E+P +FL
Sbjct: 300 EDQFISNPVLPDDLLKEAVPGNIRRAEHFISFLKRFIEYLKTRMKVTHTISETPPSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
T LKD++ IERKPLRFCA
Sbjct: 358 ---------------------------------------THLKDLTY---IERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ D+ L + ATLV++Y KGF +I+EPF +A TVPNP+L+F
Sbjct: 376 ERLTSLVRTLELVNIEDYQPLQEVATFATLVATYDKGFVLILEPFESEAATVPNPILHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGTLSPL+MYPK+L F V+ S+SMTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFTAVLQESYSMTLARRSFLPMI 493
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 137/197 (69%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++
Sbjct: 119 SVKREKSGTVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L G E CPYF AR+ + I++YSYHYLLDPKIA VS+EL++ +VVFDEAHNI
Sbjct: 179 LSRYGEEHKQCPYFSARRMMPWCNIIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ ++ ++ KA LE +++MK D KL+ EY++LVEGL++A+ AR
Sbjct: 239 DNVCIESLSIDLSEDSLRKATRGANNLERRIEDMKSTDEEKLKNEYSKLVEGLQEAEKAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ D ++NPVLPD++L+
Sbjct: 299 DEDQFISNPVLPDDLLK 315
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 92/144 (63%), Gaps = 14/144 (9%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM +LKK LD GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDVGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK---HNEEINMTGLVLSSRKNLCIH 540
+P + KL+YCSRT+ EIEK + EL L ++ K H EE G L+SRKNLC+H
Sbjct: 61 QHYP-EHRKLIYCSRTMSEIEKALAELKALMEHRAKELGHEEEFRALG--LTSRKNLCLH 117
Query: 541 SEFETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 118 P--------SVKREKSGTVVDARC 133
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 66/108 (61%), Gaps = 8/108 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF R KR +L
Sbjct: 634 ARL-EFLRENYRIRENDFLSFDAIRHAAQCLGRVLRGKDDYGVMVLADRRFER--KRPQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSL 923
PKWI + + D+ TNLST+ AV +K +LR MAQPF +D G++ L
Sbjct: 691 PKWINQAMLDSETNLSTDMAVSNAKNFLRTMAQPFKSKDQEGISTWGL 738
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F R+D V+RNYG L+ + A + PDGVV FF SYLY+ES+++ W GI+D +
Sbjct: 503 VSSSFGIRNDPGVVRNYGSLVTEFARITPDGVVVFFPSYLYMESIISMWQGMGILDQIWN 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA +S
Sbjct: 563 YKLILVETPDAQES 576
>gi|402592700|gb|EJW86627.1| excision repair cross-complementing rodent repair deficiency
[Wuchereria bancrofti]
Length = 772
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/418 (48%), Positives = 278/418 (66%), Gaps = 45/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS R G +VDG C LT+S VR + + ++P C F+EK D ++ GVY++ L
Sbjct: 132 VSSLRQGSLVDGACQKLTASFVRAKRRLRPDLPCCAFFEKLDE-QKDFNYPDGVYNLQNL 190
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+++G++ G+CPYFL+R + A IVVYSYHY+LDPKIA +VSK +R S VVFDEAHNID
Sbjct: 191 RKLGQQRGICPYFLSRNVVDRAHIVVYSYHYILDPKIAELVSKNFSRHSCVVFDEAHNID 250
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++S+SV + + T+EKA + LE ++ ++E +S +LR EY RLVEGLR + R
Sbjct: 251 NVCIESMSVSLTKTTVEKATQKLGILEEHVQRLREENSEQLRVEYDRLVEGLRRIEEERT 310
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +LANPVLPD IL+E VPG IR A HF+ FL+RF EYLK R+R + V+ ESPA FL+
Sbjct: 311 NDQILANPVLPDMILKEAVPGTIRNALHFISFLRRFNEYLKHRMRTKTVLIESPAAFLR- 369
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
D++ + I+R+PLRFCA
Sbjct: 370 -------------------------------------------DVNDLMHIDRRPLRFCA 386
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ER ASL RTLE+ +++DFSSLV+IT+ ATLVS+Y +GF +++EP +K+ T + L+
Sbjct: 387 ERFASLTRTLELADISDFSSLVLITNFATLVSTYARGFTVVIEPLDEKSGTGHSCTLHLS 446
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+S+AI+P+F R+ TVVITSGTLSPLDMYPKIL+F P IM S SMTLARPC+ P++
Sbjct: 447 CMDASVAIRPIFQRYHTVVITSGTLSPLDMYPKILDFDPAIMASLSMTLARPCIAPLI 504
Score = 206 bits (524), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 99/199 (49%), Positives = 138/199 (69%), Gaps = 1/199 (0%)
Query: 653 SRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSI 712
+ SVS R G +VDG C LT+S VR + + ++P C F+EK D ++ GVY++
Sbjct: 129 NESVSSLRQGSLVDGACQKLTASFVRAKRRLRPDLPCCAFFEKLDE-QKDFNYPDGVYNL 187
Query: 713 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAH 772
L+++G++ G+CPYFL+R + A IVVYSYHY+LDPKIA +VSK +R S VVFDEAH
Sbjct: 188 QNLRKLGQQRGICPYFLSRNVVDRAHIVVYSYHYILDPKIAELVSKNFSRHSCVVFDEAH 247
Query: 773 NIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS 832
NIDNVC++S+SV + + T+EKA + LE ++ ++E +S +LR EY RLVEGLR +
Sbjct: 248 NIDNVCIESMSVSLTKTTVEKATQKLGILEEHVQRLREENSEQLRVEYDRLVEGLRRIEE 307
Query: 833 ARETDVVLANPVLPDEILQ 851
R D +LANPVLPD IL+
Sbjct: 308 ERTNDQILANPVLPDMILK 326
Score = 152 bits (385), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 113/186 (60%), Gaps = 22/186 (11%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
+D L V+FPY+YIYPEQ YM ELKK LDAKGHCLLEMPSGTGKT SLLSL++AYM P
Sbjct: 16 VDGLEVYFPYDYIYPEQILYMSELKKTLDAKGHCLLEMPSGTGKTVSLLSLVIAYMLRFP 75
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYIK-HNEEINMTGLVLSSRKNLCIHSEFETR 546
+ KL+YCSRT+PEIEK VEEL LF YY + + ++ + LS+RKNLCI+
Sbjct: 76 DHLDKLVYCSRTIPEIEKCVEELRNLFKYYEQCDGKPPSLFAVALSARKNLCIN------ 129
Query: 547 DDISVIRNYGQLLVDIAC-------------VVPDGVVCFFTSYLYLESVFETRDDISVI 593
+ +S +R LVD AC + PD C F L + F D + +
Sbjct: 130 ESVSSLRQGS--LVDGACQKLTASFVRAKRRLRPDLPCCAFFEKLDEQKDFNYPDGVYNL 187
Query: 594 RNYGQL 599
+N +L
Sbjct: 188 QNLRKL 193
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 75/97 (77%), Gaps = 2/97 (2%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P +V + + S FE+R+D +VIRNYG L++++A +VPDGVV FFTSYLY+E+
Sbjct: 499 CIAP-LIVSKGNDQVAMTSRFESREDAAVIRNYGSLVLELASLVPDGVVVFFTSYLYMEN 557
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKER 660
V+++WYDQGIID L K KLLFIET DAL++ S++ E+
Sbjct: 558 VISTWYDQGIIDELLKYKLLFIETTDALET-SIALEK 593
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 76/115 (66%), Gaps = 6/115 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + L+GK+DYG+M+FADKRF+R DK KL
Sbjct: 645 ARL-EYLREQLGIRENDFLTFDAMRQAAQCMGRALRGKSDYGLMVFADKRFSRKDKMGKL 703
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKE 930
P+WIQEY+T NLS EEAV ++++W MAQ FT+E LG++LL+ + L EKE
Sbjct: 704 PRWIQEYITPGNVNLSIEEAVIIARKWFPLMAQSFTKEHQLGISLLTEEMLREKE 758
>gi|145240349|ref|XP_001392821.1| DNA repair helicase rad15 [Aspergillus niger CBS 513.88]
gi|134077338|emb|CAK39953.1| unnamed protein product [Aspergillus niger]
Length = 801
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/418 (48%), Positives = 279/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++ L
Sbjct: 120 VKREKSGAVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G E CPYF AR+ + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNID
Sbjct: 180 LKYGEEHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA LE + EMK +D+ KL+ EY++LVEGL+ A+ ARE
Sbjct: 240 NVCIESLSIDLTEDSLRKATRGANNLERKINEMKTSDAEKLQNEYSKLVEGLQAAEQARE 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D ++NPVLPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V + E+P +FL
Sbjct: 300 EDQFISNPVLPDDLLKEAVPGNIRRAEHFVSFLKRFIEYLKTRMKVMHTISETPPSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
T +KD++ IERKPLRFCA
Sbjct: 358 ---------------------------------------THVKDLTY---IERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ D+ L + ATLV++Y KGF +I+EPF +A TVPNPVL+F
Sbjct: 376 ERLTSLVRTLELINIEDYQPLQEVATFATLVATYEKGFLLILEPFESEAATVPNPVLHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVF+RF +V+ITSGTLSPL+MYPK+L F V+ S+SMTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFERFSSVIITSGTLSPLEMYPKMLGFNAVMQESYSMTLARRSFLPMI 493
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 137/197 (69%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++
Sbjct: 119 SVKREKSGAVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L + G E CPYF AR+ + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNI
Sbjct: 179 LLKYGEEHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA LE + EMK +D+ KL+ EY++LVEGL+ A+ AR
Sbjct: 239 DNVCIESLSIDLTEDSLRKATRGANNLERKINEMKTSDAEKLQNEYSKLVEGLQAAEQAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
E D ++NPVLPD++L+
Sbjct: 299 EEDQFISNPVLPDDLLK 315
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 92/144 (63%), Gaps = 14/144 (9%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK---HNEEINMTGLVLSSRKNLCIH 540
+P + KL+YCSRT+ EIEK + EL L + K + E+ G L+SRKNLC+H
Sbjct: 61 QHYP-EHRKLIYCSRTMSEIEKALAELKALMKFRAKELGYTEDFRALG--LTSRKNLCLH 117
Query: 541 SEFETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 118 P--------SVKREKSGAVVDARC 133
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG L+++ + + PDGVV FF SYLY+ES+++ W GI+D++
Sbjct: 503 ISSSFQIRNDPGVVRNYGNLVLEFSRITPDGVVVFFPSYLYMESIISMWQGMGILDSIWN 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA +S
Sbjct: 563 YKLILVETPDAQES 576
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 74/127 (58%), Gaps = 9/127 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR++L
Sbjct: 634 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFQK--KRNQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSL-DQLLEKEHARA 934
PKWI + + ++ TNLST+ A +K +LR MAQPF D G++ SL D +E +
Sbjct: 691 PKWINQAMLESETNLSTDMAAATAKNFLRTMAQPFKARDQEGISTWSLADIERHREKQKL 750
Query: 935 EEEEVPR 941
EEE R
Sbjct: 751 EEERALR 757
>gi|169612700|ref|XP_001799767.1| hypothetical protein SNOG_09475 [Phaeosphaeria nodorum SN15]
gi|160702563|gb|EAT82740.2| hypothetical protein SNOG_09475 [Phaeosphaeria nodorum SN15]
Length = 724
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 200/418 (47%), Positives = 276/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD +C SLT+ V+++ + GE++ +C +++ D + + PGV++ L
Sbjct: 45 VKREKSGTVVDSKCRSLTAGFVKEKKERGEDVDLCVYHDNLDLLEPHNLVPPGVFTFDGL 104
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF AR+ + + +++YSYHYLLDPKIA+ VSKEL++ +VVFDEAHNID
Sbjct: 105 LKYGEKHKQCPYFSARRMMAYCNVIIYSYHYLLDPKIADRVSKELSKDCIVVFDEAHNID 164
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ I ++ KA + L+ + EMK D+ KL+ EYA+LVEGLR A AR+
Sbjct: 165 NVCIESLSIDITEDSLRKATKGVNNLDRKITEMKTTDAEKLQSEYAKLVEGLRTADEARQ 224
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANP LPD++L E VPGNIR AEHFV FLKRFIEYLKTR++V V+ E+P +FL
Sbjct: 225 EDTFMANPALPDDLLTEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLHVISETPPSFL-- 282
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+HL+ TF IE+KPLRFCA
Sbjct: 283 ---------------------QHLRD------------LTF---------IEKKPLRFCA 300
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L I ATLV++Y GF +I+EPF TVPNPVL+F
Sbjct: 301 ERLTSLVRTLELTNIEDYQPLQDIATFATLVATYETGFLLILEPFESATATVPNPVLHFT 360
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVF+RF +V++TSGT+SPLDMYP++LNF V+ SF+MTL R LPM+
Sbjct: 361 CLDAAIAIKPVFERFYSVIVTSGTMSPLDMYPRMLNFNTVVQESFTMTLTRKTFLPMI 418
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/196 (44%), Positives = 135/196 (68%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
+V +E+ G +VD +C SLT+ V+++ + GE++ +C +++ D + + PGV++
Sbjct: 44 TVKREKSGTVVDSKCRSLTAGFVKEKKERGEDVDLCVYHDNLDLLEPHNLVPPGVFTFDG 103
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L + G + CPYF AR+ + + +++YSYHYLLDPKIA+ VSKEL++ +VVFDEAHNI
Sbjct: 104 LLKYGEKHKQCPYFSARRMMAYCNVIIYSYHYLLDPKIADRVSKELSKDCIVVFDEAHNI 163
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ I ++ KA + L+ + EMK D+ KL+ EYA+LVEGLR A AR
Sbjct: 164 DNVCIESLSIDITEDSLRKATKGVNNLDRKITEMKTTDAEKLQSEYAKLVEGLRTADEAR 223
Query: 835 ETDVVLANPVLPDEIL 850
+ D +ANP LPD++L
Sbjct: 224 QEDTFMANPALPDDLL 239
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 52/74 (70%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D+ V RN+G LL++ + PDGVV FF SYLY+ES++++W I+D + K
Sbjct: 428 ITSQFEHRNDLQVQRNFGTLLIEFCKLTPDGVVVFFPSYLYMESIISAWQGMEILDTVWK 487
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 488 YKLILVETPDAQET 501
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 59/89 (66%), Gaps = 4/89 (4%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++GK DYGIM+ ADKRF + K ++LPKWIQ+ L T LS ++AV +K +L+ M++
Sbjct: 591 VIRGKDDYGIMVLADKRFNK--KVTQLPKWIQQGLEAKSTKLSIDQAVGNAKAFLKDMSK 648
Query: 909 PFTREDMLGVALLSLDQLLEKEHARAEEE 937
P++R++ G + S + L + H + E+
Sbjct: 649 PWSRKEGEGHSSWSYEDL--RAHQKKREQ 675
>gi|259488995|tpe|CBF88902.1| TPA: 5' to 3' DNA helicase (Eurofung) [Aspergillus nidulans FGSC
A4]
Length = 791
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/418 (48%), Positives = 277/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++ L
Sbjct: 120 VKREKSGTVVDARCRSLTAGFVKEKKEKGEDVELCVYHENLDLLEPHNLVPPGVFTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G + CPYF AR+ + + +++YSYHYLLDPKIA VSKE ++ +VVFDEAHNID
Sbjct: 180 LNYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKEFSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ I ++ KA LE ++++K +D+ KL EY +LVEGLR+A+ AR+
Sbjct: 240 NVCIESLSIDITEDSLRKATRGANNLERKIQDVKSSDAEKLNNEYMKLVEGLREAEQARD 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D ++NPVLPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V + E+P +FL
Sbjct: 300 EDQFISNPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPLSFLN- 358
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
H+K TF IERKPLRFCA
Sbjct: 359 ----------------------HVKE------------LTF---------IERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ D+ L + ATLVS+Y KGF +I+EPF +A TVPNPVL+F
Sbjct: 376 ERLTSLVRTLELINIEDYQPLQEVATFATLVSTYDKGFLLILEPFESEAATVPNPVLHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +VVITSGTLSPL+MYPK+L F V+ S+SMTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFDRFSSVVITSGTLSPLEMYPKMLGFTTVMQESYSMTLARRSFLPMI 493
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 136/197 (69%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++
Sbjct: 119 SVKREKSGTVVDARCRSLTAGFVKEKKEKGEDVELCVYHENLDLLEPHNLVPPGVFTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L G + CPYF AR+ + + +++YSYHYLLDPKIA VSKE ++ +VVFDEAHNI
Sbjct: 179 LLNYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKEFSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ I ++ KA LE ++++K +D+ KL EY +LVEGLR+A+ AR
Sbjct: 239 DNVCIESLSIDITEDSLRKATRGANNLERKIQDVKSSDAEKLNNEYMKLVEGLREAEQAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ D ++NPVLPD++L+
Sbjct: 299 DEDQFISNPVLPDDLLK 315
Score = 142 bits (358), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 93/145 (64%), Gaps = 16/145 (11%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT +LLSLIVAY
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVTLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMT----GLVLSSRKNLCI 539
+P + KL+YCSRT+ EIEK + EL L + +E++ T L L+SRKNLC+
Sbjct: 61 QHYP-EHRKLIYCSRTMSEIEKALAELRELMKF---RSEQLGYTEDFRALGLTSRKNLCL 116
Query: 540 HSEFETRDDISVIRNYGQLLVDIAC 564
H SV R +VD C
Sbjct: 117 HP--------SVKREKSGTVVDARC 133
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 74/123 (60%), Gaps = 8/123 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYGIM+ AD+RF + KR++L
Sbjct: 634 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFQK--KRNQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + L ++ TNLST+ AV +K +LR MAQPF +D G++ SL L + +
Sbjct: 691 PKWISQALLESETNLSTDMAVATAKNFLRTMAQPFKAKDQEGISTWSLADLERHRQKQIQ 750
Query: 936 EEE 938
E+E
Sbjct: 751 EQE 753
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG ++++ + + PDGVV FF SYLY+ES+++ W GI+D++
Sbjct: 503 ISSSFQIRNDPGVVRNYGNIVLEFSRITPDGVVVFFPSYLYMESIISMWQGMGILDSIWN 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA +S
Sbjct: 563 YKLILVETPDAQES 576
>gi|189188692|ref|XP_001930685.1| TFIIH basal transcription factor complex helicase subunit
[Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972291|gb|EDU39790.1| TFIIH basal transcription factor complex helicase subunit
[Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 772
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/418 (47%), Positives = 272/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE + +C ++E D + + PGV++ +
Sbjct: 96 VKREKSGTVVDARCRSLTAGFVKEKKERGEPVELCVYHENLDLLEPHNLIPPGVWTFDGM 155
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF AR+ + H +++YSYHYLLDPKIA+ VSKEL++ +VVFDEAHNID
Sbjct: 156 LKYGEQQKQCPYFTARRMMPHCNVIIYSYHYLLDPKIADRVSKELSKDCIVVFDEAHNID 215
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + + KA + L+ + EMK +D+ KL+ EYA+LVEGLR A AR
Sbjct: 216 NVCIESLSIDLTEDVLRKATKGVNNLDRKITEMKSSDAEKLQNEYAKLVEGLRAADEARN 275
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANP LPD++L E VPGNIR AEHFV FLKRFIEYLKTR++V VV ++P FLK
Sbjct: 276 EDAFMANPALPDDLLTEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLNVVADTPPEFLK- 334
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L+D++ IERKPLRFCA
Sbjct: 335 ----------------------------------------HLRDLT---FIERKPLRFCA 351
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y GF +I+EPF TVPNPVL+
Sbjct: 352 ERLTSLVRTLELTNIEDYQPLQEVATFATLVATYETGFLLIIEPFESATATVPNPVLHLT 411
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVF+RF +V++TSGT+SPLDMYP++LNF V+ SF+MTL R LPM+
Sbjct: 412 CLDAAIAIKPVFERFYSVIVTSGTMSPLDMYPRMLNFNTVVQESFTMTLTRKSFLPMI 469
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 90/196 (45%), Positives = 133/196 (67%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE + +C ++E D + + PGV++
Sbjct: 95 SVKREKSGTVVDARCRSLTAGFVKEKKERGEPVELCVYHENLDLLEPHNLIPPGVWTFDG 154
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ + G + CPYF AR+ + H +++YSYHYLLDPKIA+ VSKEL++ +VVFDEAHNI
Sbjct: 155 MLKYGEQQKQCPYFTARRMMPHCNVIIYSYHYLLDPKIADRVSKELSKDCIVVFDEAHNI 214
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + + KA + L+ + EMK +D+ KL+ EYA+LVEGLR A AR
Sbjct: 215 DNVCIESLSIDLTEDVLRKATKGVNNLDRKITEMKSSDAEKLQNEYAKLVEGLRAADEAR 274
Query: 835 ETDVVLANPVLPDEIL 850
D +ANP LPD++L
Sbjct: 275 NEDAFMANPALPDDLL 290
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 72/118 (61%), Gaps = 10/118 (8%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M +LK+ LD GHC+LEMPSGTGKT SLLSLIVAY +P + KL+YCSRT+ EIEK +
Sbjct: 1 MCDLKRTLDQGGHCVLEMPSGTGKTVSLLSLIVAYQQHYP-EKRKLIYCSRTMSEIEKAL 59
Query: 508 EELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
EL L Y E + GL L+SRKNLC+H SV R +VD C
Sbjct: 60 AELKALMKYRTTELGYEEDFRGLGLTSRKNLCLHP--------SVKREKSGTVVDARC 109
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 51/72 (70%)
Query: 582 SVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRK 641
S FE R+D+ V RN+G LL++ + PDGVV FF SYLY+ES++++W I+D + K K
Sbjct: 481 SQFEHRNDLQVQRNFGNLLIEFCKLTPDGVVVFFPSYLYMESIISAWQGMEILDTVWKYK 540
Query: 642 LLFIETQDALDS 653
L+ +ET DA ++
Sbjct: 541 LILVETPDAQET 552
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 54/78 (69%), Gaps = 2/78 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++GK DYGIM+ ADKRF + K+++LPKWIQ+ L T LS ++AV +K +L+ M+
Sbjct: 642 VIRGKDDYGIMVLADKRFNK--KQTQLPKWIQQGLDAKSTKLSIDQAVGAAKNFLKDMSI 699
Query: 909 PFTREDMLGVALLSLDQL 926
P++R + G + SL+ L
Sbjct: 700 PWSRAEQEGHSSWSLEDL 717
>gi|330947928|ref|XP_003307004.1| hypothetical protein PTT_20325 [Pyrenophora teres f. teres 0-1]
gi|311315183|gb|EFQ84891.1| hypothetical protein PTT_20325 [Pyrenophora teres f. teres 0-1]
Length = 796
Score = 414 bits (1065), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/418 (47%), Positives = 272/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE + +C ++E D + + PGV++ +
Sbjct: 120 VKREKSGTVVDARCRSLTAGFVKEKKERGEPVELCVYHENLDLLEPHNLIPPGVWTFDGM 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF AR+ + H +++YSYHYLLDPKIA+ VSKEL++ +VVFDEAHNID
Sbjct: 180 LKYGEQQKQCPYFTARRMMPHCNVIIYSYHYLLDPKIADRVSKELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + + KA + L+ + EMK +D+ KL+ EYA+LVEGLR A AR
Sbjct: 240 NVCIESLSIDLTEDVLRKATKGVNNLDRKITEMKSSDAEKLQNEYAKLVEGLRAADEARN 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANP LPD++L E VPGNIR AEHFV FLKRFIEYLKTR++V VV ++P FLK
Sbjct: 300 EDAFMANPALPDDLLTEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLNVVADTPPEFLKH 359
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L+D++ IERKPLRFCA
Sbjct: 360 -----------------------------------------LRDLT---FIERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y GF +I+EPF TVPNPVL+
Sbjct: 376 ERLTSLVRTLELTNIEDYQPLQEVATFATLVATYETGFLLIIEPFESATATVPNPVLHLT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVF+RF +V++TSGT+SPLDMYP++LNF V+ SF+MTL R LPM+
Sbjct: 436 CLDAAIAIKPVFERFYSVIVTSGTMSPLDMYPRMLNFNTVVQESFTMTLTRKSFLPMI 493
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 90/196 (45%), Positives = 133/196 (67%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE + +C ++E D + + PGV++
Sbjct: 119 SVKREKSGTVVDARCRSLTAGFVKEKKERGEPVELCVYHENLDLLEPHNLIPPGVWTFDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ + G + CPYF AR+ + H +++YSYHYLLDPKIA+ VSKEL++ +VVFDEAHNI
Sbjct: 179 MLKYGEQQKQCPYFTARRMMPHCNVIIYSYHYLLDPKIADRVSKELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + + KA + L+ + EMK +D+ KL+ EYA+LVEGLR A AR
Sbjct: 239 DNVCIESLSIDLTEDVLRKATKGVNNLDRKITEMKSSDAEKLQNEYAKLVEGLRAADEAR 298
Query: 835 ETDVVLANPVLPDEIL 850
D +ANP LPD++L
Sbjct: 299 NEDAFMANPALPDDLL 314
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/142 (53%), Positives = 90/142 (63%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID+LPV FPY +YPEQYAYM +LK+ LD GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFYIDNLPVLFPYPRVYPEQYAYMCDLKRTLDQGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRT+ EIEK + EL L Y E + GL L+SRKNLC+H
Sbjct: 61 QHYP-EKRKLIYCSRTMSEIEKALAELKALMKYRTTELGYEEDFRGLGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 -------SVKREKSGTVVDARC 133
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 51/72 (70%)
Query: 582 SVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRK 641
S FE R+D+ V RN+G LL++ + PDGVV FF SYLY+ES++++W I+D + K K
Sbjct: 505 SQFEHRNDLQVQRNFGNLLIEFCKLTPDGVVVFFPSYLYMESIISAWQGMEILDTVWKYK 564
Query: 642 LLFIETQDALDS 653
L+ +ET DA ++
Sbjct: 565 LILVETPDAQET 576
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++GK DYGIM+ ADKRF + K+++LPKWIQ+ L T LS ++AV +K +L++M+
Sbjct: 666 VIRGKDDYGIMVLADKRFNK--KQTQLPKWIQQGLDAKSTKLSIDQAVGAAKNFLKEMSI 723
Query: 909 PFTREDMLGVALLSLDQLLEKEHARAEE 936
P++R + G + SL+ L + +A +
Sbjct: 724 PWSRAEQEGHSSWSLEDLEAHQRKKAAQ 751
>gi|367035588|ref|XP_003667076.1| hypothetical protein MYCTH_104059 [Myceliophthora thermophila ATCC
42464]
gi|347014349|gb|AEO61831.1| hypothetical protein MYCTH_104059 [Myceliophthora thermophila ATCC
42464]
Length = 799
Score = 414 bits (1065), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/418 (48%), Positives = 275/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ ++++ + GE++ VC +++ D + + GV++ +
Sbjct: 118 VKREKSGNVVDARCRSLTAGFIKEKKEKGEDVEVCVYHDNLDLLEPHNLIPNGVWTFDGI 177
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G + CPYF AR+ + + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNID
Sbjct: 178 LRYGEQHKQCPYFTARRMMQYCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 237
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+++LS I ++ KA Q LE + EM+E+D KL++EY +LVEGL+ A R+
Sbjct: 238 NVCIEALSTDITDDSLRKATRGAQNLENKINEMRESDQQKLQDEYEKLVEGLKGADDGRQ 297
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANP LPD++L+E VPGNIR AEHFV FL+RFIEYLKTR++V+QV+ E+P +FL
Sbjct: 298 EDSFMANPTLPDDLLKEAVPGNIRRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLA- 356
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPLRFCA
Sbjct: 357 ----------------------HLKEH------------TF---------IEKKPLRFCA 373
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EPF VPNPVL+F
Sbjct: 374 ERLTSLVRTLELTNIEDYQPLQEVATFATLVATYEKGFLLILEPFESDTAEVPNPVLHFT 433
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +VVITSGTLSPL+MYPK+LNF V+ S+SMTLAR LPM+
Sbjct: 434 CLDAAIAIKPVFDRFSSVVITSGTLSPLEMYPKMLNFPTVVQESYSMTLARRSFLPMI 491
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 132/197 (67%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ ++++ + GE++ VC +++ D + + GV++
Sbjct: 117 SVKREKSGNVVDARCRSLTAGFIKEKKEKGEDVEVCVYHDNLDLLEPHNLIPNGVWTFDG 176
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ G + CPYF AR+ + + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNI
Sbjct: 177 ILRYGEQHKQCPYFTARRMMQYCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNI 236
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC+++LS I ++ KA Q LE + EM+E+D KL++EY +LVEGL+ A R
Sbjct: 237 DNVCIEALSTDITDDSLRKATRGAQNLENKINEMRESDQQKLQDEYEKLVEGLKGADDGR 296
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANP LPD++L+
Sbjct: 297 QEDSFMANPTLPDDLLK 313
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 108/193 (55%), Gaps = 21/193 (10%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYP Y MV+LKK LDA G+C+LEMPSGTGKT +LLSLIVAY
Sbjct: 1 MEFNIDDLPVLFPYPRIYPGNY--MVDLKKTLDAGGNCVLEMPSGTGKTVTLLSLIVAYQ 58
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+P KL+YCSRT+ EIEK + EL L + + E GL L+SRKNLC+H
Sbjct: 59 QYYP-SHRKLIYCSRTMSEIEKALVELKALMKFRAERLGYEEEFRGLGLTSRKNLCLHP- 116
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQL-LV 601
SV R +VD C + +++ E +D+ V + L L+
Sbjct: 117 -------SVKREKSGNVVDARCRS--------LTAGFIKEKKEKGEDVEVCVYHDNLDLL 161
Query: 602 DIACVVPDGVVCF 614
+ ++P+GV F
Sbjct: 162 EPHNLIPNGVWTF 174
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF R KR++L
Sbjct: 632 ARL-EFLRETYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGLMVLADRRFQR--KRAQL 688
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + L D NLST+ AV ++R+LR MAQPF +D G++ S+D L + E
Sbjct: 689 PKWISQALLDADVNLSTDMAVSSARRFLRTMAQPFRAKDQEGISTWSIDDLRRHQEKMDE 748
Query: 936 E 936
E
Sbjct: 749 E 749
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ + F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 501 ISTSFQVRNEPSVVRNYGNLLTEFAKITPDGMVVFFPSYLYMESIISMWQGMGILDEVWK 560
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 561 YKLILVETPDAQET 574
>gi|16416010|emb|CAB91361.2| probable excision repair protein rhp3 [Neurospora crassa]
Length = 806
Score = 414 bits (1064), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/418 (47%), Positives = 274/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G IVD RC SLT+ V+++ + GEN+ C +++ D + + G++++ L
Sbjct: 120 VKREKSGAIVDARCRSLTAGFVKEKREKGENVETCVYHDNLDLLEPHNLIPNGIWTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF AR+ + H +++YSYHYLLDPKIA VSK+L++ +VVFDEAHNID
Sbjct: 180 MRYGEEKKQCPYFTARRMMQHCNVIIYSYHYLLDPKIAERVSKDLSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I + ++ +A Q LE + EMK++D KL+ EY +LVEGL+ R+
Sbjct: 240 NVCIESLSTDITQDSLMRATRGAQNLEAKISEMKDSDQEKLQSEYEKLVEGLKGLDEGRQ 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANP LPD++L+E VPGNIR AEHFV FL+RFIEYLKTR++V+QV+ E+P +FL
Sbjct: 300 EDAFMANPTLPDDLLKEAVPGNIRRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLA- 358
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPLRFCA
Sbjct: 359 ----------------------HLKE------------YTF---------IEKKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EP+ PNPVL+F
Sbjct: 376 ERLTSLVRTLELTNIEDYRPLQEVATFATLVATYEKGFLLILEPYESDTAKTPNPVLHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGT+SPL+MYPK+LNF+ V+ S++MTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLNFETVVQESYAMTLARRSFLPMI 493
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 131/197 (66%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G IVD RC SLT+ V+++ + GEN+ C +++ D + + G++++
Sbjct: 119 SVKREKSGAIVDARCRSLTAGFVKEKREKGENVETCVYHDNLDLLEPHNLIPNGIWTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L G E CPYF AR+ + H +++YSYHYLLDPKIA VSK+L++ +VVFDEAHNI
Sbjct: 179 LMRYGEEKKQCPYFTARRMMQHCNVIIYSYHYLLDPKIAERVSKDLSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I + ++ +A Q LE + EMK++D KL+ EY +LVEGL+ R
Sbjct: 239 DNVCIESLSTDITQDSLMRATRGAQNLEAKISEMKDSDQEKLQSEYEKLVEGLKGLDEGR 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANP LPD++L+
Sbjct: 299 QEDAFMANPTLPDDLLK 315
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 94/144 (65%), Gaps = 14/144 (9%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYMV+LKK LDA G+C+LEMPSGTGKT +LLSLIVAY
Sbjct: 1 MEFNIDDLPVLFPYPRIYPEQYAYMVDLKKTLDAGGNCVLEMPSGTGKTVTLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY---YIKHNEEINMTGLVLSSRKNLCIH 540
+P + KL+YCSRT+ EIEK + EL L + + H EE GL L+SRKNLC+H
Sbjct: 61 QYYP-EHRKLIYCSRTMSEIEKALVELRALMKFRAERLGHEEEFR--GLGLTSRKNLCLH 117
Query: 541 SEFETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 118 P--------SVKREKSGAIVDARC 133
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 74/121 (61%), Gaps = 8/121 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR++L
Sbjct: 634 ARL-EFLRETYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFMK--KRAQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + TNLST+ AV ++ +L+QMAQPF+ +D GV++ ++ L + AE
Sbjct: 691 PKWINQAFLEANTNLSTDMAVGNARAFLKQMAQPFSAKDQEGVSIWGMEDLKRHQEKMAE 750
Query: 936 E 936
+
Sbjct: 751 D 751
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ + F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 503 ISTSFQVRNEPSVVRNYGNLLTEFARITPDGMVVFFPSYLYMESIISMWQGMGILDEVWK 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 563 HKLILVETPDAQET 576
>gi|367055120|ref|XP_003657938.1| hypothetical protein THITE_2124189 [Thielavia terrestris NRRL 8126]
gi|347005204|gb|AEO71602.1| hypothetical protein THITE_2124189 [Thielavia terrestris NRRL 8126]
Length = 800
Score = 414 bits (1064), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/418 (47%), Positives = 275/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ GE++ VC +++ D + + G++++ L
Sbjct: 120 VKREKSGNVVDARCRSLTAGFVKEKKNKGEDVEVCVYHDNLDLLEPHNLIPNGIWTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G + CPYF AR+ + + +++YSYHYLLDPKIA VSK+L++ +VVFDEAHNID
Sbjct: 180 LRYGEQHKQCPYFTARRMMQYCNVIIYSYHYLLDPKIAERVSKDLSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I ++ +A Q LE + EM+E+D KL++EY +LVEGLR A R+
Sbjct: 240 NVCIESLSTDITEDSLRRATRGAQNLENRINEMRESDQQKLQDEYEKLVEGLRGADDGRQ 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANP LPD++L+E VPGNIR AEHFV FL+RFIEYLKTR++V+QV+ E+P +FL
Sbjct: 300 EDSFMANPTLPDDLLKEAVPGNIRRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLA- 358
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPLRFCA
Sbjct: 359 ----------------------HLKE------------YTF---------IEKKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EP+ VPNPVL+F
Sbjct: 376 ERLTSLVRTLELTNIEDYQPLQEVATFATLVATYEKGFLLILEPYESDTAEVPNPVLHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGT+SPL+MYPK+LNF V+ S+SMTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLNFPTVVQESYSMTLARRSFLPMI 493
Score = 196 bits (498), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 132/197 (67%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ GE++ VC +++ D + + G++++
Sbjct: 119 SVKREKSGNVVDARCRSLTAGFVKEKKNKGEDVEVCVYHDNLDLLEPHNLIPNGIWTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L G + CPYF AR+ + + +++YSYHYLLDPKIA VSK+L++ +VVFDEAHNI
Sbjct: 179 LLRYGEQHKQCPYFTARRMMQYCNVIIYSYHYLLDPKIAERVSKDLSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I ++ +A Q LE + EM+E+D KL++EY +LVEGLR A R
Sbjct: 239 DNVCIESLSTDITEDSLRRATRGAQNLENRINEMRESDQQKLQDEYEKLVEGLRGADDGR 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANP LPD++L+
Sbjct: 299 QEDSFMANPTLPDDLLK 315
Score = 142 bits (358), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 93/144 (64%), Gaps = 14/144 (9%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYMV+LKK LDA G+C+LEMPSGTGKT +LLSLIVAY
Sbjct: 1 MEFNIDDLPVLFPYPRIYPEQYAYMVDLKKTLDAGGNCVLEMPSGTGKTVTLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY---YIKHNEEINMTGLVLSSRKNLCIH 540
+P KL+YCSRT+ EIEK + EL L + + H EE GL L+SRKNLC+H
Sbjct: 61 QYYP-SHRKLIYCSRTMSEIEKALVELKALMKFRAQRLGHEEEFR--GLGLTSRKNLCLH 117
Query: 541 SEFETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 118 P--------SVKREKSGNVVDARC 133
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR++L
Sbjct: 634 ARL-EFLRETYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGLMVLADRRFQK--KRAQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + L D TNLST+ AV ++R+L+ MAQPF +D G++ SL L + E
Sbjct: 691 PKWINQALLDADTNLSTDMAVSSARRFLKTMAQPFRAKDQEGISTWSLADLRRHQEKMDE 750
Query: 936 E 936
E
Sbjct: 751 E 751
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ + F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 503 ISTSFQVRNEPSVVRNYGNLLTEFAKITPDGMVVFFPSYLYMESIISMWQGMGILDEVWK 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 563 YKLILVETPDAQET 576
>gi|296822250|ref|XP_002850254.1| DNA repair helicase RAD3 [Arthroderma otae CBS 113480]
gi|238837808|gb|EEQ27470.1| DNA repair helicase RAD3 [Arthroderma otae CBS 113480]
Length = 792
Score = 414 bits (1064), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/418 (47%), Positives = 276/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++ L
Sbjct: 120 VKREKSGTVVDARCRSLTAGFVKEKKEKGEDVELCIYHENLDLLEPGNLVPPGVFTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF AR+ + + +++YSYHYLLDPKIA VSKEL+R S++VFDEAHNID
Sbjct: 180 IKYGEQYKQCPYFSARRMMQYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA LE + EMK D+ KL+ EY +LVEGL++A ARE
Sbjct: 240 NVCIESLSIDLTEDSLRKASRGANNLERKIDEMKSTDAEKLQNEYQKLVEGLQEADEARE 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ ++ANPVLPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V + E+P +FL
Sbjct: 300 EEQLMANPVLPDDLLKESVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPLSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ LKD++ IERKPLRFCA
Sbjct: 358 ---------------------------------------SHLKDLT---FIERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ D+ L + ATL ++Y KGF +I+EPF TVPNP+L+F
Sbjct: 376 ERLTSLVRTLELVNIEDYQPLQEVATFATLAATYEKGFLLILEPFESDTATVPNPILHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGTLSPL+MYPK+L F + S+SMTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFDAALQESYSMTLARRSFLPMI 493
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 138/197 (70%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++
Sbjct: 119 SVKREKSGTVVDARCRSLTAGFVKEKKEKGEDVELCIYHENLDLLEPGNLVPPGVFTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L + G + CPYF AR+ + + +++YSYHYLLDPKIA VSKEL+R S++VFDEAHNI
Sbjct: 179 LIKYGEQYKQCPYFSARRMMQYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA LE + EMK D+ KL+ EY +LVEGL++A AR
Sbjct: 239 DNVCIESLSIDLTEDSLRKASRGANNLERKIDEMKSTDAEKLQNEYQKLVEGLQEADEAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
E + ++ANPVLPD++L+
Sbjct: 299 EEEQLMANPVLPDDLLK 315
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 91/142 (64%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLP+ FPY IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT +LL+LIVAY
Sbjct: 1 MEFYIDDLPILFPYPRIYPEQYAYMCDLKKVLDAGGHCVLEMPSGTGKTITLLALIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRT+ EIEK + EL L Y + + + L L+SRKNLC+H
Sbjct: 61 QHYP-EHRKLIYCSRTMSEIEKALSELHALMKYRSQKLGAVEDFRALGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 -------SVKREKSGTVVDARC 133
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 70/111 (63%), Gaps = 8/111 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR++L
Sbjct: 634 ARL-EFLRENYRIRENDFLSFDALRHAAQCLGRVLRGKDDYGVMVLADRRFQK--KRNQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
PKWI + + ++ TNLST+ AV +K +L+ MAQPF +D G++ SL+ L
Sbjct: 691 PKWISQAMLESETNLSTDMAVATAKIFLKSMAQPFKAKDQEGISTWSLEDL 741
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 52/74 (70%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG +L++ + PDGVV FF SYLY+ES+++ W GI+D++
Sbjct: 503 ISSSFQIRNDPGVVRNYGNMLLEFCRITPDGVVVFFPSYLYMESIISMWQGMGILDSVWN 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ +S
Sbjct: 563 YKLILVETPDSQES 576
>gi|164428066|ref|XP_956536.2| DNA repair helicase RAD3 [Neurospora crassa OR74A]
gi|157071997|gb|EAA27300.2| DNA repair helicase RAD3 [Neurospora crassa OR74A]
Length = 796
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/418 (47%), Positives = 274/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G IVD RC SLT+ V+++ + GEN+ C +++ D + + G++++ L
Sbjct: 110 VKREKSGAIVDARCRSLTAGFVKEKREKGENVETCVYHDNLDLLEPHNLIPNGIWTLDGL 169
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF AR+ + H +++YSYHYLLDPKIA VSK+L++ +VVFDEAHNID
Sbjct: 170 MRYGEEKKQCPYFTARRMMQHCNVIIYSYHYLLDPKIAERVSKDLSKDCIVVFDEAHNID 229
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I + ++ +A Q LE + EMK++D KL+ EY +LVEGL+ R+
Sbjct: 230 NVCIESLSTDITQDSLMRATRGAQNLEAKISEMKDSDQEKLQSEYEKLVEGLKGLDEGRQ 289
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANP LPD++L+E VPGNIR AEHFV FL+RFIEYLKTR++V+QV+ E+P +FL
Sbjct: 290 EDAFMANPTLPDDLLKEAVPGNIRRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLA- 348
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPLRFCA
Sbjct: 349 ----------------------HLKE------------YTF---------IEKKPLRFCA 365
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EP+ PNPVL+F
Sbjct: 366 ERLTSLVRTLELTNIEDYRPLQEVATFATLVATYEKGFLLILEPYESDTAKTPNPVLHFT 425
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGT+SPL+MYPK+LNF+ V+ S++MTLAR LPM+
Sbjct: 426 CLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLNFETVVQESYAMTLARRSFLPMI 483
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 131/197 (66%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G IVD RC SLT+ V+++ + GEN+ C +++ D + + G++++
Sbjct: 109 SVKREKSGAIVDARCRSLTAGFVKEKREKGENVETCVYHDNLDLLEPHNLIPNGIWTLDG 168
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L G E CPYF AR+ + H +++YSYHYLLDPKIA VSK+L++ +VVFDEAHNI
Sbjct: 169 LMRYGEEKKQCPYFTARRMMQHCNVIIYSYHYLLDPKIAERVSKDLSKDCIVVFDEAHNI 228
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I + ++ +A Q LE + EMK++D KL+ EY +LVEGL+ R
Sbjct: 229 DNVCIESLSTDITQDSLMRATRGAQNLEAKISEMKDSDQEKLQSEYEKLVEGLKGLDEGR 288
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANP LPD++L+
Sbjct: 289 QEDAFMANPTLPDDLLK 305
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/144 (49%), Positives = 84/144 (58%), Gaps = 24/144 (16%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPE LDA G+C+LEMPSGTGKT +LLSLIVAY
Sbjct: 1 MEFNIDDLPVLFPYPRIYPE----------TLDAGGNCVLEMPSGTGKTVTLLSLIVAYQ 50
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY---YIKHNEEINMTGLVLSSRKNLCIH 540
+P + KL+YCSRT+ EIEK + EL L + + H EE GL L+SRKNLC+H
Sbjct: 51 QYYP-EHRKLIYCSRTMSEIEKALVELRALMKFRAERLGHEEEFR--GLGLTSRKNLCLH 107
Query: 541 SEFETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 108 P--------SVKREKSGAIVDARC 123
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 74/121 (61%), Gaps = 8/121 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR++L
Sbjct: 624 ARL-EFLRETYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFMK--KRAQL 680
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + TNLST+ AV ++ +L+QMAQPF+ +D GV++ ++ L + AE
Sbjct: 681 PKWINQAFLEANTNLSTDMAVGNARAFLKQMAQPFSAKDQEGVSIWGMEDLKRHQEKMAE 740
Query: 936 E 936
+
Sbjct: 741 D 741
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ + F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 493 ISTSFQVRNEPSVVRNYGNLLTEFARITPDGMVVFFPSYLYMESIISMWQGMGILDEVWK 552
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 553 HKLILVETPDAQET 566
>gi|393220578|gb|EJD06064.1| DNA repair helicase [Fomitiporia mediterranea MF3/22]
Length = 800
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/420 (47%), Positives = 285/420 (67%), Gaps = 47/420 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKER G +VD RC LTS+ R R+ G ++P C F+++ +A + PG++++
Sbjct: 126 VSKERKGVVVDARCRDLTSAFTMERARNNPG-SVPTCSFHDELEAFEPGNLIPPGIHTLA 184
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+ + GR+ G+CPYF R+ + +++YS+HYLLDPK+A VSK++++ ++VVFDEAHN
Sbjct: 185 DVLQYGRDKGVCPYFTVRRMMAFVDVIIYSFHYLLDPKVAEQVSKDISKDAIVVFDEAHN 244
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + R ++ A ++ L ++E+K D+++L++EYA+LVEGL++A A
Sbjct: 245 IDNVCLESLSIDLTRPMLDSAARSVTRLGDKIEEIKITDASRLQDEYAKLVEGLQEADEA 304
Query: 179 RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL 238
R+ D ++ANPVLPD++L+E VPGNIR AEHFV FLKRF+EYLKTR+RV VV E+P +FL
Sbjct: 305 RQEDAIMANPVLPDDLLKEAVPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAETPLSFL 364
Query: 239 KDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRF 298
+ LKDI+ IER+PLRF
Sbjct: 365 Q-----------------------------------------HLKDIT---FIERRPLRF 380
Query: 299 CAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLY 358
CAERL SL+RTLE+TNL +++SL + + ATLV++Y KGF +I+EPF TVPNP+ +
Sbjct: 381 CAERLQSLVRTLELTNLDEYASLQKVANFATLVATYEKGFLLILEPFETDNATVPNPIFH 440
Query: 359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
F CLD SLAI PVF+RF +VVITSGT+SPLDMYPK+L F PV+ +++MTL R LP+V
Sbjct: 441 FTCLDPSLAIAPVFERFSSVVITSGTISPLDMYPKMLQFTPVVQETYAMTLTRNSFLPLV 500
Score = 192 bits (489), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 86/198 (43%), Positives = 142/198 (71%), Gaps = 3/198 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
VSKER G +VD RC LTS+ R R+ G ++P C F+++ +A + PG++++
Sbjct: 126 VSKERKGVVVDARCRDLTSAFTMERARNNPG-SVPTCSFHDELEAFEPGNLIPPGIHTLA 184
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
+ + GR+ G+CPYF R+ + +++YS+HYLLDPK+A VSK++++ ++VVFDEAHN
Sbjct: 185 DVLQYGRDKGVCPYFTVRRMMAFVDVIIYSFHYLLDPKVAEQVSKDISKDAIVVFDEAHN 244
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC++SLS+ + R ++ A ++ L ++E+K D+++L++EYA+LVEGL++A A
Sbjct: 245 IDNVCLESLSIDLTRPMLDSAARSVTRLGDKIEEIKITDASRLQDEYAKLVEGLQEADEA 304
Query: 834 RETDVVLANPVLPDEILQ 851
R+ D ++ANPVLPD++L+
Sbjct: 305 RQEDAIMANPVLPDDLLK 322
Score = 159 bits (401), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 77/126 (61%), Positives = 92/126 (73%), Gaps = 8/126 (6%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M +IDDLP+ FPY+ IYPEQY YM +LK+ LDA GHC+LEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFLIDDLPIIFPYDRIYPEQYQYMCDLKRTLDASGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNE-------EINMTGLVLSSRKN 536
+P KL+YCSRTVPEIEK + EL RL +Y I+H E E TG+ L+SRKN
Sbjct: 61 QFYPTK-RKLIYCSRTVPEIEKALAELKRLMEYRIQHAETEEERQKERAFTGVGLTSRKN 119
Query: 537 LCIHSE 542
LC+H E
Sbjct: 120 LCLHPE 125
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 79/118 (66%), Gaps = 8/118 (6%)
Query: 821 ARLVEGLRDAQSARET-----DVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRDA RE+ D + +L+GKTD+G+M+FADKRFAR+DKR+KL
Sbjct: 639 ARL-EYLRDAYRIRESEFLGFDAMRNAAQCVGRVLRGKTDWGLMVFADKRFARADKRAKL 697
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHAR 933
P+WI +Y+T+ NLST+ A+ LSK ++RQ++Q ED G++L +L +EK A+
Sbjct: 698 PRWINQYITETAANLSTDMALVLSKLFMRQISQTHA-EDQTGISLWTLAD-IEKAQAK 753
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 80/136 (58%), Gaps = 9/136 (6%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +LV+ + +VPDG+ FF SYLY+ES+VA+W D GI++ + K
Sbjct: 510 ISSRFEVRNDPAVVRNFGAILVEYSKIVPDGIAAFFPSYLYMESIVAAWNDMGILNEVWK 569
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAV 699
KL+F+ET DA ++ + +GR L S + R K E I DF +
Sbjct: 570 HKLIFVETPDANETSIALENYRRACNNGRGAVLLSVA---RGKVSEGI---DFDHNY--- 620
Query: 700 GREAPLAPGVYSITKL 715
GR + P Y+ +++
Sbjct: 621 GRAVIIVPYQYTESRI 636
>gi|240278769|gb|EER42275.1| DNA repair helicase RAD3 [Ajellomyces capsulatus H143]
Length = 773
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/418 (47%), Positives = 277/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++ +
Sbjct: 96 VKREKSGAVVDARCRSLTAGFVKEKKEKGEDVELCIYHENLDLLEPSNLVPPGVFTLDDI 155
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF R+ + K+++YSYHYLLDPKIA VS+EL++ S+VVFDEAHNID
Sbjct: 156 TKYGEQHKQCPYFSVRRMMPFCKVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNID 215
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA LE ++EMK +D+ KL+ EY +LVEGLR+A AR+
Sbjct: 216 NVCIESLSIDLTEDSLRKASRGANNLERKIEEMKRSDAEKLQNEYQKLVEGLREADEARQ 275
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ ++ANP LPD++L+E VPGNIR AEHFV FLKRFIEYLKTR+++ + E+P +FL
Sbjct: 276 EEQLMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKITHTISETPLSFL-- 333
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
LKD++ IERKPLRFCA
Sbjct: 334 ---------------------------------------AHLKDLT---FIERKPLRFCA 351
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ NL D+ L + ATL ++Y KGF +I+EPF + TVPNP+L+F
Sbjct: 352 ERLTSLVRTLELVNLEDYQPLQQVAAFATLAATYEKGFLLILEPFESETATVPNPILHFT 411
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V++TSGTLSPL+MYPK+L F V+ S++MTLAR LPMV
Sbjct: 412 CLDAAIAIKPVFDRFSSVIVTSGTLSPLEMYPKMLKFTTVLQESYTMTLARRSFLPMV 469
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 138/197 (70%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++
Sbjct: 95 SVKREKSGAVVDARCRSLTAGFVKEKKEKGEDVELCIYHENLDLLEPSNLVPPGVFTLDD 154
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ + G + CPYF R+ + K+++YSYHYLLDPKIA VS+EL++ S+VVFDEAHNI
Sbjct: 155 ITKYGEQHKQCPYFSVRRMMPFCKVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNI 214
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA LE ++EMK +D+ KL+ EY +LVEGLR+A AR
Sbjct: 215 DNVCIESLSIDLTEDSLRKASRGANNLERKIEEMKRSDAEKLQNEYQKLVEGLREADEAR 274
Query: 835 ETDVVLANPVLPDEILQ 851
+ + ++ANP LPD++L+
Sbjct: 275 QEEQLMANPALPDDLLK 291
Score = 106 bits (264), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 72/118 (61%), Gaps = 10/118 (8%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M +LKK LDA GHC+LEMPSGTGKT SLLSLIVAY P + KL+YCSRT+ EIEK +
Sbjct: 1 MCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQQHQP-EQRKLIYCSRTMSEIEKAL 59
Query: 508 EELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
EL L Y + + GL L+SRKNLC+H SV R +VD C
Sbjct: 60 AELKALMKYRAQQLGFAEDFRGLGLTSRKNLCLHP--------SVKREKSGAVVDARC 109
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 74/123 (60%), Gaps = 8/123 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +++GK DYG+M+ AD+RF + +R++L
Sbjct: 610 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVIRGKDDYGVMVLADRRFQK--RRTQL 666
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + ++ TNLST+ AV +K +L+ MAQPF +D G++ SL L + E
Sbjct: 667 PKWISQAMLESETNLSTDMAVATAKSFLKTMAQPFKSKDQEGISTWSLTDLEYHVKKKRE 726
Query: 936 EEE 938
EE+
Sbjct: 727 EED 729
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 52/74 (70%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG LL++ + + PDGVV FF SYLY+ES+++ W GI+D +
Sbjct: 479 ISSSFQIRNDPGVVRNYGNLLLEFSRITPDGVVVFFPSYLYMESIISMWQGMGILDLVWN 538
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ +S
Sbjct: 539 YKLILVETPDSQES 552
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISV---IRN 595
I S F+ R+D V+RNYG LL++ + + PDGVV FF SYLY+ES+ + + + N
Sbjct: 479 ISSSFQIRNDPGVVRNYGNLLLEFSRITPDGVVVFFPSYLYMESIISMWQGMGILDLVWN 538
Query: 596 YGQLLVD 602
Y +LV+
Sbjct: 539 YKLILVE 545
>gi|46116906|ref|XP_384471.1| hypothetical protein FG04295.1 [Gibberella zeae PH-1]
Length = 761
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/418 (47%), Positives = 275/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G IVD RC SLT+ V+++ + GEN+ VC +++ D + + GV+S +
Sbjct: 92 VKREKSGAIVDARCRSLTAGFVKEKKERGENVDVCVYHDNLDLLEPHNLIPNGVWSFDDI 151
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF AR+ + + +V++SYHYLLDPKIA VSK+ ++ +VVFDEAHNID
Sbjct: 152 IRYGEEQKQCPYFTARRMMQYCNVVIFSYHYLLDPKIAERVSKDFSKDCIVVFDEAHNID 211
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I ++ KA Q LE + +M++ D +L+ EY +LV+GLRDA AR+
Sbjct: 212 NVCIESLSTDITEDSLRKATRGAQNLENKISQMRDTDQEQLQNEYQKLVQGLRDADEARQ 271
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANP LP+++L+E VPGNIR AEHF+ FLKRFIEYLKTR++V+QV+ E+P +FL
Sbjct: 272 EDAFMANPALPEDLLKEAVPGNIRRAEHFIAFLKRFIEYLKTRMKVRQVISETPPSFLA- 330
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HL+ TF IE+KPLRFCA
Sbjct: 331 ----------------------HLREH------------TF---------IEKKPLRFCA 347
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EPF VPNPVL+F
Sbjct: 348 ERLTSLVRTLELTNIEDYQPLQEVATFATLVATYEKGFLLILEPFESDTAEVPNPVLHFT 407
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGT+SPL++YPK+L+FQ VI S++MTLAR +PM+
Sbjct: 408 CLDAAIAIKPVFDRFYSVIITSGTISPLEIYPKMLDFQTVIQESYAMTLARRSFMPMI 465
Score = 196 bits (497), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 131/197 (66%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G IVD RC SLT+ V+++ + GEN+ VC +++ D + + GV+S
Sbjct: 91 SVKREKSGAIVDARCRSLTAGFVKEKKERGENVDVCVYHDNLDLLEPHNLIPNGVWSFDD 150
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ G E CPYF AR+ + + +V++SYHYLLDPKIA VSK+ ++ +VVFDEAHNI
Sbjct: 151 IIRYGEEQKQCPYFTARRMMQYCNVVIFSYHYLLDPKIAERVSKDFSKDCIVVFDEAHNI 210
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I ++ KA Q LE + +M++ D +L+ EY +LV+GLRDA AR
Sbjct: 211 DNVCIESLSTDITEDSLRKATRGAQNLENKISQMRDTDQEQLQNEYQKLVQGLRDADEAR 270
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANP LP+++L+
Sbjct: 271 QEDAFMANPALPEDLLK 287
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 68/113 (60%), Gaps = 10/113 (8%)
Query: 453 KALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512
+ LDA GHC+LEMPSGTGKT SLLSLIVAY P + KL+YCSRT+ EIEK + EL
Sbjct: 2 QTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQQYMP-EKRKLIYCSRTMSEIEKALVELKS 60
Query: 513 LFDYYIKH-NEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
L Y + E GL L+SRKNLC+H SV R +VD C
Sbjct: 61 LMKYRAEELGYEEEFRGLGLTSRKNLCLHP--------SVKREKSGAIVDARC 105
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 62/99 (62%), Gaps = 8/99 (8%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYGIM+ AD+RF + KR++LPKWI + L ++ NLST+ AV ++R+LR MAQ
Sbjct: 638 VLRGKDDYGIMVLADRRFQK--KRTQLPKWINQGLQESDVNLSTDMAVSSARRFLRTMAQ 695
Query: 909 PFTREDMLGVALLSLDQLLEK------EHARAEEEEVPR 941
PF +D G++ L+E E + EEE R
Sbjct: 696 PFRAKDQEGISTWGYKDLMEHKEKMDLERIKELEEEAQR 734
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 51/70 (72%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W G++D + K KL+
Sbjct: 479 FQVRNEPSVVRNYGNLLTEFAKITPDGMVVFFPSYLYMESIISMWQGMGVLDEVWKYKLI 538
Query: 644 FIETQDALDS 653
+ET DA ++
Sbjct: 539 LVETPDAQET 548
>gi|408395822|gb|EKJ74995.1| hypothetical protein FPSE_04815 [Fusarium pseudograminearum CS3096]
Length = 789
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/418 (47%), Positives = 275/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G IVD RC SLT+ V+++ + GEN+ VC +++ D + + GV+S +
Sbjct: 120 VKREKSGAIVDARCRSLTAGFVKEKKERGENVDVCVYHDNLDLLEPHNLIPNGVWSFDDI 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF AR+ + + +V++SYHYLLDPKIA VSK+ ++ +VVFDEAHNID
Sbjct: 180 IRYGEEQKQCPYFTARRMMQYCNVVIFSYHYLLDPKIAERVSKDFSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I ++ KA Q LE + +M++ D +L+ EY +LV+GLRDA AR+
Sbjct: 240 NVCIESLSTDITEDSLRKATRGAQNLENKISQMRDTDQEQLQNEYQKLVQGLRDADEARQ 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANP LP+++L+E VPGNIR AEHF+ FLKRFIEYLKTR++V+QV+ E+P +FL
Sbjct: 300 EDAFMANPALPEDLLKEAVPGNIRRAEHFIAFLKRFIEYLKTRMKVRQVISETPPSFLS- 358
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HL+ TF IE+KPLRFCA
Sbjct: 359 ----------------------HLREH------------TF---------IEKKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EPF VPNPVL+F
Sbjct: 376 ERLTSLVRTLELTNIEDYQPLQEVATFATLVATYEKGFLLILEPFESDTAEVPNPVLHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGT+SPL++YPK+L+FQ VI S++MTLAR +PM+
Sbjct: 436 CLDAAIAIKPVFDRFYSVIITSGTISPLEIYPKMLDFQTVIQESYAMTLARRSFMPMI 493
Score = 196 bits (497), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 131/197 (66%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G IVD RC SLT+ V+++ + GEN+ VC +++ D + + GV+S
Sbjct: 119 SVKREKSGAIVDARCRSLTAGFVKEKKERGENVDVCVYHDNLDLLEPHNLIPNGVWSFDD 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ G E CPYF AR+ + + +V++SYHYLLDPKIA VSK+ ++ +VVFDEAHNI
Sbjct: 179 IIRYGEEQKQCPYFTARRMMQYCNVVIFSYHYLLDPKIAERVSKDFSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I ++ KA Q LE + +M++ D +L+ EY +LV+GLRDA AR
Sbjct: 239 DNVCIESLSTDITEDSLRKATRGAQNLENKISQMRDTDQEQLQNEYQKLVQGLRDADEAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANP LP+++L+
Sbjct: 299 QEDAFMANPALPEDLLK 315
Score = 145 bits (365), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/142 (56%), Positives = 90/142 (63%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFNIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
P + KL+YCSRT+ EIEK + EL L Y + E GL L+SRKNLC+H
Sbjct: 61 QYMP-EKRKLIYCSRTMSEIEKALVELKSLMKYRAEELGYEEEFRGLGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 -------SVKREKSGAIVDARC 133
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 62/99 (62%), Gaps = 8/99 (8%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYGIM+ AD+RF + KR++LPKWI + L ++ NLST+ AV ++R+LR MAQ
Sbjct: 666 VLRGKDDYGIMVLADRRFQK--KRTQLPKWINQGLQESDVNLSTDMAVSSARRFLRTMAQ 723
Query: 909 PFTREDMLGVALLSLDQLLEK------EHARAEEEEVPR 941
PF +D G++ L+E E + EEE R
Sbjct: 724 PFRAKDQEGISTWGYKDLMEHKEKMDLERIKELEEEAQR 762
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 51/70 (72%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W G++D + K KL+
Sbjct: 507 FQVRNEPSVVRNYGNLLTEFAKITPDGMVVFFPSYLYMESIISMWQGMGVLDEVWKYKLI 566
Query: 644 FIETQDALDS 653
+ET DA ++
Sbjct: 567 LVETPDAQET 576
>gi|325090321|gb|EGC43631.1| DNA repair helicase RAD3 [Ajellomyces capsulatus H88]
Length = 797
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/418 (47%), Positives = 277/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++ +
Sbjct: 120 VKREKSGAVVDARCRSLTAGFVKEKKEKGEDVELCIYHENLDLLEPSNLVPPGVFTLDDI 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF R+ + K+++YSYHYLLDPKIA VS+EL++ S+VVFDEAHNID
Sbjct: 180 TKYGEQHKQCPYFSVRRMMPFCKVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA LE ++EMK +D+ KL+ EY +LVEGLR+A AR+
Sbjct: 240 NVCIESLSIDLTEDSLRKASRGANNLERKIEEMKRSDAEKLQNEYQKLVEGLREADEARQ 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ ++ANP LPD++L+E VPGNIR AEHFV FLKRFIEYLKTR+++ + E+P +FL
Sbjct: 300 EEQLMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKITHTISETPLSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
LKD++ IERKPLRFCA
Sbjct: 358 ---------------------------------------AHLKDLT---FIERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ NL D+ L + ATL ++Y KGF +I+EPF + TVPNP+L+F
Sbjct: 376 ERLTSLVRTLELVNLEDYQPLQQVAAFATLAATYEKGFLLILEPFESETATVPNPILHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V++TSGTLSPL+MYPK+L F V+ S++MTLAR LPMV
Sbjct: 436 CLDAAIAIKPVFDRFSSVIVTSGTLSPLEMYPKMLKFTTVLQESYTMTLARRSFLPMV 493
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 138/197 (70%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++
Sbjct: 119 SVKREKSGAVVDARCRSLTAGFVKEKKEKGEDVELCIYHENLDLLEPSNLVPPGVFTLDD 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ + G + CPYF R+ + K+++YSYHYLLDPKIA VS+EL++ S+VVFDEAHNI
Sbjct: 179 ITKYGEQHKQCPYFSVRRMMPFCKVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA LE ++EMK +D+ KL+ EY +LVEGLR+A AR
Sbjct: 239 DNVCIESLSIDLTEDSLRKASRGANNLERKIEEMKRSDAEKLQNEYQKLVEGLREADEAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ + ++ANP LPD++L+
Sbjct: 299 QEEQLMANPALPDDLLK 315
Score = 145 bits (367), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 79/142 (55%), Positives = 90/142 (63%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
P + KL+YCSRT+ EIEK + EL L Y + + GL L+SRKNLC+H
Sbjct: 61 QHQP-EQRKLIYCSRTMSEIEKALAELKALMKYRAQQLGFAEDFRGLGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 -------SVKREKSGAVVDARC 133
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 74/123 (60%), Gaps = 8/123 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +++GK DYG+M+ AD+RF + +R++L
Sbjct: 634 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVIRGKDDYGVMVLADRRFQK--RRTQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + ++ TNLST+ AV +K +L+ MAQPF +D G++ SL L + E
Sbjct: 691 PKWISQAMLESETNLSTDMAVATAKSFLKTMAQPFKSKDQEGISTWSLTDLEYHVKKKRE 750
Query: 936 EEE 938
EE+
Sbjct: 751 EED 753
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 52/74 (70%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG LL++ + + PDGVV FF SYLY+ES+++ W GI+D +
Sbjct: 503 ISSSFQIRNDPGVVRNYGNLLLEFSRITPDGVVVFFPSYLYMESIISMWQGMGILDLVWN 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ +S
Sbjct: 563 YKLILVETPDSQES 576
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISV---IRN 595
I S F+ R+D V+RNYG LL++ + + PDGVV FF SYLY+ES+ + + + N
Sbjct: 503 ISSSFQIRNDPGVVRNYGNLLLEFSRITPDGVVVFFPSYLYMESIISMWQGMGILDLVWN 562
Query: 596 YGQLLVD 602
Y +LV+
Sbjct: 563 YKLILVE 569
>gi|341891975|gb|EGT47910.1| hypothetical protein CAEBREN_01520 [Caenorhabditis brenneri]
Length = 714
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/418 (50%), Positives = 281/418 (67%), Gaps = 50/418 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R G VD C LTSSSVR + + +I CDF+E F+A G P+ GV+++ L
Sbjct: 80 VAALRFGNTVDSACQKLTSSSVRAKKQEDPSIEGCDFFENFEANG--FPMQNGVWNLENL 137
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ +GRE +CPYF AR AI A IVVYSYHY+LDPKIA +VSK+ +R SVVVFDEAHNID
Sbjct: 138 RTLGREKKICPYFTARNAINRAHIVVYSYHYILDPKIAELVSKDFSRKSVVVFDEAHNID 197
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++S+SV I+++ ++A+ +Q LEG + MK A+S KL+ EY RLVEGLR A+ R
Sbjct: 198 NVCIESMSVAISQKNADRALQELQNLEGVVGRMKTANSEKLKTEYDRLVEGLRKAERERA 257
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D LANP +PD+IL+E VPGNIR A HF+ FLKRF+EY++ RLR QV+ ESPA+F+KD
Sbjct: 258 NDERLANPCIPDDILKEAVPGNIRQANHFLLFLKRFVEYVRHRLRTHQVLIESPASFMKD 317
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
I QE ++CIER+P+RFCA
Sbjct: 318 I---------------------------------QE-----------RMCIERRPMRFCA 333
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL++L++TLEIT+ D +L +T L TLVS+Y++GF++I+EP D + +L
Sbjct: 334 ERLSNLVKTLEITDNGDVWALSQVTTLCTLVSTYSRGFSVIIEP-QDGSQMA---MLTLS 389
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C D+S+AI+PV R Q+V+ITSGTLSPL+MYPKIL+F P ++ SF+MTLARPCL P+V
Sbjct: 390 CHDASIAIRPVLKRHQSVIITSGTLSPLEMYPKILDFDPAVVASFTMTLARPCLAPLV 447
Score = 215 bits (548), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 105/196 (53%), Positives = 139/196 (70%), Gaps = 2/196 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
V+ R G VD C LTSSSVR + + +I CDF+E F+A G P+ GV+++ L
Sbjct: 80 VAALRFGNTVDSACQKLTSSSVRAKKQEDPSIEGCDFFENFEANG--FPMQNGVWNLENL 137
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
+ +GRE +CPYF AR AI A IVVYSYHY+LDPKIA +VSK+ +R SVVVFDEAHNID
Sbjct: 138 RTLGREKKICPYFTARNAINRAHIVVYSYHYILDPKIAELVSKDFSRKSVVVFDEAHNID 197
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC++S+SV I+++ ++A+ +Q LEG + MK A+S KL+ EY RLVEGLR A+ R
Sbjct: 198 NVCIESMSVAISQKNADRALQELQNLEGVVGRMKTANSEKLKTEYDRLVEGLRKAERERA 257
Query: 836 TDVVLANPVLPDEILQ 851
D LANP +PD+IL+
Sbjct: 258 NDERLANPCIPDDILK 273
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 79/115 (68%), Gaps = 6/115 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD + RE D + + + L+ KTDYG+M+FADKRF+R+DKR KL
Sbjct: 588 ARL-EYLRDTFNIRENDFLTFDAMRHTAQCMGRALRSKTDYGLMVFADKRFSRTDKRGKL 646
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKE 930
P+W+QEYL TNLS +EA Q+++RWL MAQPF +E LGV+LL+ + + +++
Sbjct: 647 PRWMQEYLEPASTNLSIDEAAQVARRWLTLMAQPFQKEHQLGVSLLNKEMVQDQQ 701
Score = 103 bits (256), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 78/124 (62%), Gaps = 4/124 (3%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P VV + + S FE R D++VIRNYG L++++A +VPDG+V FFTSYLY+E+
Sbjct: 442 CLAP-LVVARGNDQVAMTSRFEQRADVAVIRNYGNLVLEMASLVPDGMVVFFTSYLYMEN 500
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKA 683
V+ WY+Q IID L K KLLFIET DAL++ + ++ GR L S + R K
Sbjct: 501 VIGVWYEQHIIDELMKYKLLFIETNDALETSAALEKYVEACDSGRGAVLFSVA---RGKV 557
Query: 684 GENI 687
E I
Sbjct: 558 SEGI 561
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 69/101 (68%), Gaps = 9/101 (8%)
Query: 465 MPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNE-E 523
MPSGTGKT SLLSL++AYM ++P + KL+YCSRT+PEIEK VEE+ L+DY+ K
Sbjct: 1 MPSGTGKTVSLLSLVLAYMISYPDRLDKLVYCSRTIPEIEKCVEEMRVLYDYWEKETGMP 60
Query: 524 INMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
+ + +S+RKNLCI+ + ++ +R +G VD AC
Sbjct: 61 VAKITVAMSARKNLCIN------EKVAALR-FGN-TVDSAC 93
>gi|452000477|gb|EMD92938.1| hypothetical protein COCHEDRAFT_1133207 [Cochliobolus
heterostrophus C5]
Length = 799
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/418 (47%), Positives = 273/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV++ +
Sbjct: 120 VKREKSGTVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLIPPGVWTFDGI 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF AR+ + + +++YSYHYLLDPKIA+ VSKEL++ +VVFDEAHNID
Sbjct: 180 LKYGEQQKQCPYFTARRMMPYCNVIIYSYHYLLDPKIADRVSKELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + + KA + L+ + EMK +D+ KL+ EYA+LVEGLR A AR
Sbjct: 240 NVCIESLSIDLTEDVLRKATKGVNNLDRKITEMKSSDAEKLQNEYAKLVEGLRAADEARN 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ +ANP LPD++L E VPGNIR AEHFV FLKRFIEYLKTR++V VV ++P FLK
Sbjct: 300 EEAFMANPALPDDLLTEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLNVVADTPPEFLK- 358
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
LKD++ IERKPLRFCA
Sbjct: 359 ----------------------------------------HLKDLT---FIERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y GF +I+EPF TVPNPVL+
Sbjct: 376 ERLTSLVRTLELTNIEDYQPLQEVATFATLVATYETGFLLIIEPFESATATVPNPVLHLT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVF+RF +V++TSGT+SPLDMYP++LNF V+ SF+MTL R LPM+
Sbjct: 436 CLDAAIAIKPVFERFYSVIVTSGTMSPLDMYPRMLNFNTVVQESFTMTLTRKSFLPMI 493
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/196 (44%), Positives = 134/196 (68%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV++
Sbjct: 119 SVKREKSGTVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLIPPGVWTFDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ + G + CPYF AR+ + + +++YSYHYLLDPKIA+ VSKEL++ +VVFDEAHNI
Sbjct: 179 ILKYGEQQKQCPYFTARRMMPYCNVIIYSYHYLLDPKIADRVSKELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + + KA + L+ + EMK +D+ KL+ EYA+LVEGLR A AR
Sbjct: 239 DNVCIESLSIDLTEDVLRKATKGVNNLDRKITEMKSSDAEKLQNEYAKLVEGLRAADEAR 298
Query: 835 ETDVVLANPVLPDEIL 850
+ +ANP LPD++L
Sbjct: 299 NEEAFMANPALPDDLL 314
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/144 (52%), Positives = 91/144 (63%), Gaps = 14/144 (9%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID LPV FPY +YPEQYAYM +LK+ LD GHC+LEMPSGTGKT SLLSLI+AY
Sbjct: 1 MKFYIDSLPVLFPYPRVYPEQYAYMCDLKRTLDQGGHCVLEMPSGTGKTVSLLSLIIAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYY---IKHNEEINMTGLVLSSRKNLCIH 540
+P + KL+YCSRT+ EIEK + EL L Y + + EE GL L+SRKNLC+H
Sbjct: 61 QHYP-EKRKLIYCSRTMSEIEKALAELKALMKYRTTELGYEEEFR--GLGLTSRKNLCLH 117
Query: 541 SEFETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 118 P--------SVKREKSGTVVDARC 133
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 51/72 (70%)
Query: 582 SVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRK 641
S FE R+D+ V RN+G LL++ + PDGVV FF SYLY+ES++++W I+D + K K
Sbjct: 505 SQFEHRNDLQVQRNFGNLLIEFCKLTPDGVVVFFPSYLYMESIISAWQGMEILDTVWKYK 564
Query: 642 LLFIETQDALDS 653
L+ +ET DA ++
Sbjct: 565 LILVETPDAQET 576
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++GK DYGIM+ ADKRF + K+++LPKWIQ+ L T LS ++AV ++K +L++M+
Sbjct: 666 VIRGKDDYGIMVLADKRFNK--KQTQLPKWIQQGLDAKNTKLSIDQAVGMAKNFLKEMSV 723
Query: 909 PFTREDMLGVALLSLDQLLEKEHARA 934
P++R + G + SL+ L + +A
Sbjct: 724 PWSRAEQEGHSSWSLEDLEAHQRKKA 749
>gi|378732396|gb|EHY58855.1| DNA repair helicase rad15 [Exophiala dermatitidis NIH/UT8656]
Length = 819
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/418 (48%), Positives = 275/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ VC +++ D + + PGV+++ L
Sbjct: 120 VKREKSGAVVDARCRSLTAGFVKEKKERGEDVEVCVYHDNLDLLEPHNLVPPGVFTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF AR+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNID
Sbjct: 180 IRYGEEHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA LE ++EMK +D KL+ EY +LVEGLR+A AR
Sbjct: 240 NVCIESLSIDLTEDSLRKATRGANNLERKIEEMKASDEEKLQNEYQKLVEGLREADEARA 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D ++NP LPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V V+QE+P +FL
Sbjct: 300 EDAFMSNPTLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLYVIQETPPSFLS- 358
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IERKPLRFCA
Sbjct: 359 ----------------------HLKE------------LTF---------IERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y GF +I+EPF + TVPNP+L+F
Sbjct: 376 ERLTSLVRTLELTNIEDYQPLQEVATFATLVATYETGFLLILEPFETEQATVPNPILHFA 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+S+AIKPVF+RF +V+ITSGT+SPL+MYPK+LNF V+ S+ M+LAR LPM+
Sbjct: 436 CLDASIAIKPVFERFSSVIITSGTISPLEMYPKMLNFSTVLQESYPMSLARRSFLPMI 493
Score = 196 bits (499), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 133/197 (67%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ VC +++ D + + PGV+++
Sbjct: 119 SVKREKSGAVVDARCRSLTAGFVKEKKERGEDVEVCVYHDNLDLLEPHNLVPPGVFTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L G E CPYF AR+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNI
Sbjct: 179 LIRYGEEHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA LE ++EMK +D KL+ EY +LVEGLR+A AR
Sbjct: 239 DNVCIESLSIDLTEDSLRKATRGANNLERKIEEMKASDEEKLQNEYQKLVEGLREADEAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
D ++NP LPD++L+
Sbjct: 299 AEDAFMSNPTLPDDLLK 315
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/142 (54%), Positives = 91/142 (64%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM +LK+ LDA GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKRTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRT+ EIEK + EL L Y + + GL L+SRKNLC+H
Sbjct: 61 QHYP-EHRKLIYCSRTMSEIEKALAELKALMKYRSDQLGYVEDFRGLGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 -------SVKREKSGAVVDARC 133
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F++R D V+RNYG LL + A + PDG+V FF SYLY+E +++ W GI+D +
Sbjct: 503 ITSGFQSRSDPGVVRNYGALLFEFAKITPDGIVVFFPSYLYMEMIISMWQGMGILDQIWT 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 563 YKLILVETPDAQET 576
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 47/62 (75%), Gaps = 2/62 (3%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYGIM+ AD+RF + KR++LP+WI E + D T LST+ AV ++K++LR +AQ
Sbjct: 666 VLRGKDDYGIMVLADRRFQK--KRNQLPRWIAEEIHDGQTGLSTDAAVGMAKKFLRSIAQ 723
Query: 909 PF 910
P
Sbjct: 724 PL 725
>gi|225560307|gb|EEH08589.1| DNA repair helicase RAD3 [Ajellomyces capsulatus G186AR]
Length = 797
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/418 (47%), Positives = 277/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + G ++ +C ++E D + + PGV+++ +
Sbjct: 120 VKREKSGAVVDARCRSLTAGFVKEKKEKGGDVELCIYHENLDLLEPSNLVPPGVFTLDDI 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF R+ + K+++YSYHYLLDPKIA VS+EL++ S+VVFDEAHNID
Sbjct: 180 TKYGEQHKQCPYFSVRRMMPFCKVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA LE ++EMK +D+ KL+ EY +LVEGLR+A AR+
Sbjct: 240 NVCIESLSIDLTEDSLRKASRGANNLERKIEEMKRSDAEKLQNEYQKLVEGLREADEARQ 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ ++ANP LPD++L+E VPGNIR AEHFV FLKRFIEYLKTR+++ + E+P +FL
Sbjct: 300 EEQLMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKITHTISETPLSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
LKD++S IERKPLRFCA
Sbjct: 358 ---------------------------------------AHLKDLTS---IERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ NL D+ L + ATL ++Y KGF +I+EPF + TVPNP+L+F
Sbjct: 376 ERLTSLVRTLELMNLEDYQPLQQVAAFATLAATYEKGFLLILEPFESETATVPNPILHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V++TSGTLSPL+MYPK+L F V+ S++MTLAR LPMV
Sbjct: 436 CLDAAIAIKPVFDRFSSVIVTSGTLSPLEMYPKMLKFTTVLQESYTMTLARRSFLPMV 493
Score = 195 bits (496), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 137/197 (69%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + G ++ +C ++E D + + PGV+++
Sbjct: 119 SVKREKSGAVVDARCRSLTAGFVKEKKEKGGDVELCIYHENLDLLEPSNLVPPGVFTLDD 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ + G + CPYF R+ + K+++YSYHYLLDPKIA VS+EL++ S+VVFDEAHNI
Sbjct: 179 ITKYGEQHKQCPYFSVRRMMPFCKVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA LE ++EMK +D+ KL+ EY +LVEGLR+A AR
Sbjct: 239 DNVCIESLSIDLTEDSLRKASRGANNLERKIEEMKRSDAEKLQNEYQKLVEGLREADEAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ + ++ANP LPD++L+
Sbjct: 299 QEEQLMANPALPDDLLK 315
Score = 146 bits (369), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/142 (55%), Positives = 91/142 (64%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSE 542
P + KL+YCSRT+ EIEK + EL L Y + + + GL L+SRKNLC+H
Sbjct: 61 QHQP-EQRKLIYCSRTMSEIEKALAELKALMKYRAQQLGFVEDFRGLGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 -------SVKREKSGAVVDARC 133
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 75/123 (60%), Gaps = 10/123 (8%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +++GK DYG+M+ AD+RF + +R++L
Sbjct: 634 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVIRGKDDYGVMVLADRRFQK--RRTQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + ++ TNLST+ AV +K +L+ MAQPF +D G++ SL L + H + +
Sbjct: 691 PKWISQAMLESETNLSTDMAVATAKSFLKTMAQPFKSKDQEGISTWSLTDL--EYHVKKQ 748
Query: 936 EEE 938
EE
Sbjct: 749 REE 751
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 52/74 (70%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG LL++ + + PDGVV FF SYLY+ES+++ W GI+D +
Sbjct: 503 ISSSFQIRNDPGVVRNYGNLLLEFSRITPDGVVVFFPSYLYMESIISMWQGMGILDLVWN 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ +S
Sbjct: 563 YKLILVETPDSQES 576
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISV---IRN 595
I S F+ R+D V+RNYG LL++ + + PDGVV FF SYLY+ES+ + + + N
Sbjct: 503 ISSSFQIRNDPGVVRNYGNLLLEFSRITPDGVVVFFPSYLYMESIISMWQGMGILDLVWN 562
Query: 596 YGQLLVD 602
Y +LV+
Sbjct: 563 YKLILVE 569
>gi|350629867|gb|EHA18240.1| DNA repair helicase, subunit of TFIIH [Aspergillus niger ATCC 1015]
Length = 811
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/428 (47%), Positives = 281/428 (65%), Gaps = 54/428 (12%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++ L
Sbjct: 120 VKREKSGAVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHA----------KIVVYSYHYLLDPKIANVVSKELARSSV 110
+ G E CPYF AR+ ++ A +++YSYHYLLDPKIA VS+EL++ +
Sbjct: 180 LKYGEEHKQCPYFSARRMLLQAYSQIVQMPFCNVIIYSYHYLLDPKIAERVSRELSKDCI 239
Query: 111 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVE 170
VVFDEAHNIDNVC++SLS+ + ++ KA LE + EMK +D+ KL+ EY++LVE
Sbjct: 240 VVFDEAHNIDNVCIESLSIDLTEDSLRKATRGANNLERKINEMKTSDAEKLQNEYSKLVE 299
Query: 171 GLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVV 230
GL+ A+ ARE D ++NPVLPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V +
Sbjct: 300 GLQAAEQAREEDQFISNPVLPDDLLKEAVPGNIRRAEHFVSFLKRFIEYLKTRMKVMHTI 359
Query: 231 QESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVC 290
E+P +FL T +KD++
Sbjct: 360 SETPPSFL-----------------------------------------THVKDLTY--- 375
Query: 291 IERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAP 350
IERKPLRFCAERL SL+RTLE+ N+ D+ L + ATLV++Y KGF +I+EPF +A
Sbjct: 376 IERKPLRFCAERLTSLVRTLELINIEDYQPLQEVATFATLVATYEKGFLLILEPFESEAA 435
Query: 351 TVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLA 410
TVPNPVL+F CLD+++AIKPVF+RF +V+ITSGTLSPL+MYPK+L F V+ S+SMTLA
Sbjct: 436 TVPNPVLHFTCLDAAIAIKPVFERFSSVIITSGTLSPLEMYPKMLGFNAVMQESYSMTLA 495
Query: 411 RPCLLPMV 418
R LPM+
Sbjct: 496 RRSFLPMI 503
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/207 (43%), Positives = 139/207 (67%), Gaps = 10/207 (4%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++
Sbjct: 119 SVKREKSGAVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLVPPGVFTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHA----------KIVVYSYHYLLDPKIANVVSKELARSS 764
L + G E CPYF AR+ ++ A +++YSYHYLLDPKIA VS+EL++
Sbjct: 179 LLKYGEEHKQCPYFSARRMLLQAYSQIVQMPFCNVIIYSYHYLLDPKIAERVSRELSKDC 238
Query: 765 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 824
+VVFDEAHNIDNVC++SLS+ + ++ KA LE + EMK +D+ KL+ EY++LV
Sbjct: 239 IVVFDEAHNIDNVCIESLSIDLTEDSLRKATRGANNLERKINEMKTSDAEKLQNEYSKLV 298
Query: 825 EGLRDAQSARETDVVLANPVLPDEILQ 851
EGL+ A+ ARE D ++NPVLPD++L+
Sbjct: 299 EGLQAAEQAREEDQFISNPVLPDDLLK 325
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 92/144 (63%), Gaps = 14/144 (9%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK---HNEEINMTGLVLSSRKNLCIH 540
+P + KL+YCSRT+ EIEK + EL L + K + E+ G L+SRKNLC+H
Sbjct: 61 QHYP-EHRKLIYCSRTMSEIEKALAELKALMKFRAKELGYTEDFRALG--LTSRKNLCLH 117
Query: 541 SEFETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 118 P--------SVKREKSGAVVDARC 133
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG L+++ + + PDGVV FF SYLY+ES+++ W GI+D++
Sbjct: 513 ISSSFQIRNDPGVVRNYGNLVLEFSRITPDGVVVFFPSYLYMESIISMWQGMGILDSIWN 572
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA +S
Sbjct: 573 YKLILVETPDAQES 586
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 74/127 (58%), Gaps = 9/127 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR++L
Sbjct: 644 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFQK--KRNQL 700
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSL-DQLLEKEHARA 934
PKWI + + ++ TNLST+ A +K +LR MAQPF D G++ SL D +E +
Sbjct: 701 PKWINQAMLESETNLSTDMAAATAKNFLRTMAQPFKARDQEGISTWSLADIERHREKQKL 760
Query: 935 EEEEVPR 941
EEE R
Sbjct: 761 EEERALR 767
>gi|451850440|gb|EMD63742.1| hypothetical protein COCSADRAFT_37505 [Cochliobolus sativus ND90Pr]
Length = 798
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/418 (47%), Positives = 273/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV++ +
Sbjct: 120 VKREKSGTVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLIPPGVWTFDGI 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF AR+ + + +++YSYHYLLDPKIA+ VSKEL++ +VVFDEAHNID
Sbjct: 180 LKYGEQQKQCPYFTARRMMPYCNVIIYSYHYLLDPKIADRVSKELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + + KA + L+ + EMK +D+ KL+ EYA+LVEGLR A AR
Sbjct: 240 NVCIESLSIDLTEDVLRKATKGVNNLDRKITEMKSSDAEKLQNEYAKLVEGLRAADEARN 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ +ANP LPD++L E VPGNIR AEHFV FLKRFIEYLKTR++V VV ++P FLK
Sbjct: 300 EEAFMANPALPDDLLTEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLNVVADTPPEFLK- 358
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
LKD++ IERKPLRFCA
Sbjct: 359 ----------------------------------------HLKDLT---FIERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y GF +I+EPF TVPNPVL+
Sbjct: 376 ERLTSLVRTLELTNIEDYQPLQEVATFATLVATYETGFLLIIEPFESATATVPNPVLHLT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVF+RF +V++TSGT+SPLDMYP++LNF V+ SF+MTL R LPM+
Sbjct: 436 CLDAAIAIKPVFERFYSVIVTSGTMSPLDMYPRMLNFNTVVQESFTMTLTRKSFLPMI 493
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/196 (44%), Positives = 134/196 (68%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV++
Sbjct: 119 SVKREKSGTVVDARCRSLTAGFVKEKKERGEDVELCVYHENLDLLEPHNLIPPGVWTFDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ + G + CPYF AR+ + + +++YSYHYLLDPKIA+ VSKEL++ +VVFDEAHNI
Sbjct: 179 ILKYGEQQKQCPYFTARRMMPYCNVIIYSYHYLLDPKIADRVSKELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + + KA + L+ + EMK +D+ KL+ EYA+LVEGLR A AR
Sbjct: 239 DNVCIESLSIDLTEDVLRKATKGVNNLDRKITEMKSSDAEKLQNEYAKLVEGLRAADEAR 298
Query: 835 ETDVVLANPVLPDEIL 850
+ +ANP LPD++L
Sbjct: 299 NEEAFMANPALPDDLL 314
Score = 139 bits (351), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/144 (52%), Positives = 91/144 (63%), Gaps = 14/144 (9%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID LPV FPY +YPEQYAYM +LK+ LD GHC+LEMPSGTGKT SLLSLI+AY
Sbjct: 1 MKFYIDSLPVLFPYPRVYPEQYAYMCDLKRTLDQGGHCVLEMPSGTGKTVSLLSLIIAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYY---IKHNEEINMTGLVLSSRKNLCIH 540
+P + KL+YCSRT+ EIEK + EL L Y + + EE GL L+SRKNLC+H
Sbjct: 61 QHYP-EKRKLIYCSRTMSEIEKALAELKALMKYRTTELGYEEEFR--GLGLTSRKNLCLH 117
Query: 541 SEFETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 118 P--------SVKREKSGTVVDARC 133
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 51/72 (70%)
Query: 582 SVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRK 641
S FE R+D+ V RN+G LL++ + PDGVV FF SYLY+ES++++W I+D + K K
Sbjct: 505 SQFEHRNDLQVQRNFGNLLIEFCKLTPDGVVVFFPSYLYMESIISAWQGMEILDTVWKYK 564
Query: 642 LLFIETQDALDS 653
L+ +ET DA ++
Sbjct: 565 LILVETPDAQET 576
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++GK DYGIM+ ADKRF + K+++LPKWIQ+ L T LS ++AV ++K +L++M+
Sbjct: 666 VIRGKDDYGIMVLADKRFNK--KQTQLPKWIQQGLDAKNTKLSIDQAVGMAKNFLKEMSV 723
Query: 909 PFTREDMLGVALLSLDQLLEKEHARA 934
P++R + G + SL+ L + +A
Sbjct: 724 PWSRAEQEGHSSWSLEDLEAHQRKKA 749
>gi|19113937|ref|NP_593025.1| transcription factor TFIIH complex subunit Rad15
[Schizosaccharomyces pombe 972h-]
gi|1709995|sp|P26659.2|RAD15_SCHPO RecName: Full=DNA repair helicase rad15; AltName: Full=Protein
rhp3; AltName: Full=RAD3 homolog
gi|1177345|emb|CAA93221.1| transcription factor TFIIH complex subunit Rad15
[Schizosaccharomyces pombe]
Length = 772
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/418 (46%), Positives = 283/418 (67%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E++G +VD RC SLT+ VR++ AG ++P C+F++ + + + ++ GV+++ +
Sbjct: 120 VRREKNGNVVDARCRSLTAGFVREQRLAGMDVPTCEFHDNLEDLEPHSLISNGVWTLDDI 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
E G + CPYF R+ + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNID
Sbjct: 180 TEYGEKTTRCPYFTVRRMLPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA +I +LE + E+K++DS KL++EY +LV GL+DA +A +
Sbjct: 240 NVCIESLSIDLTESSLRKASKSILSLEQKVNEVKQSDSKKLQDEYQKLVRGLQDANAAND 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANPVLP+++L+E VPGNIR AEHF+ FLKRF+EYLKTR++V V+ E+P +FL+
Sbjct: 300 EDQFMANPVLPEDVLKEAVPGNIRRAEHFIAFLKRFVEYLKTRMKVLHVIAETPTSFLQH 359
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ KDI+ I++KPLRFCA
Sbjct: 360 V-----------------------------------------KDIT---FIDKKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+R L+I+ + DF SL + ATLV++Y +GF +I+EPF + TVPNP+L F
Sbjct: 376 ERLTSLVRALQISLVEDFHSLQQVVAFATLVATYERGFILILEPFETENATVPNPILRFS 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+S+AIKPVF+RF++V+ITSGTLSPLDMYPK+L F V+ S+ M+LAR C LPMV
Sbjct: 436 CLDASIAIKPVFERFRSVIITSGTLSPLDMYPKMLQFNTVMQESYGMSLARNCFLPMV 493
Score = 199 bits (506), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 141/197 (71%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E++G +VD RC SLT+ VR++ AG ++P C+F++ + + + ++ GV+++
Sbjct: 119 SVRREKNGNVVDARCRSLTAGFVREQRLAGMDVPTCEFHDNLEDLEPHSLISNGVWTLDD 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ E G + CPYF R+ + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNI
Sbjct: 179 ITEYGEKTTRCPYFTVRRMLPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA +I +LE + E+K++DS KL++EY +LV GL+DA +A
Sbjct: 239 DNVCIESLSIDLTESSLRKASKSILSLEQKVNEVKQSDSKKLQDEYQKLVRGLQDANAAN 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANPVLP+++L+
Sbjct: 299 DEDQFMANPVLPEDVLK 315
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 88/142 (61%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLP+ FPY IYPEQY YM +LK +LDA G LLEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFYIDDLPILFPYPRIYPEQYQYMCDLKHSLDAGGIALLEMPSGTGKTISLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRT+ EI+K + EL RL Y E GL L+SRKNLC+H
Sbjct: 61 QHYP-EHRKLIYCSRTMSEIDKALAELKRLMAYRTSQLGYEEPFLGLGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 -------SVRREKNGNVVDARC 133
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 77/112 (68%), Gaps = 6/112 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GK D+GIM+ ADKR+ RSDKR+KL
Sbjct: 634 ARL-EFLRDTYQIREADFLTFDAMRHAAQCLGRVLRGKDDHGIMVLADKRYGRSDKRTKL 692
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLL 927
PKWIQ+Y+T+ TNLST+ ++ L+K++LR MAQPFT D G++ SLD LL
Sbjct: 693 PKWIQQYITEGATNLSTDMSLALAKKFLRTMAQPFTASDQEGISWWSLDDLL 744
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 76/134 (56%), Gaps = 5/134 (3%)
Query: 554 NYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVC 613
+YG L C +P VV + + + S FE R+D SV+RNYG +LV+ + + PDG+V
Sbjct: 479 SYGMSLAR-NCFLP-MVVTRGSDQVAISSKFEARNDPSVVRNYGNILVEFSKITPDGLVA 536
Query: 614 FFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLT 673
FF SYLYLES+V+SW GI+D + K KL+ +ET D ++ + +GR L
Sbjct: 537 FFPSYLYLESIVSSWQSMGILDEVWKYKLILVETPDPHETTLALETYRAACSNGRGAVLL 596
Query: 674 SSSVRDRHKAGENI 687
S + R K E +
Sbjct: 597 SVA---RGKVSEGV 607
>gi|5022|emb|CAA43022.1| rad15 [Schizosaccharomyces pombe]
Length = 772
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/418 (46%), Positives = 283/418 (67%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E++G +VD RC SLT+ VR++ AG ++P C+F++ + + + ++ GV+++ +
Sbjct: 120 VRREKNGNVVDARCRSLTAGFVREQRLAGMDVPTCEFHDNLEDLEPHSLISNGVWTLDDI 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
E G + CPYF R+ + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNID
Sbjct: 180 TEYGEKTTRCPYFTVRRMLPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA +I +LE + E+K++DS KL++EY +LV GL+DA +A +
Sbjct: 240 NVCIESLSIDLTESSLRKASKSILSLEQKVNEVKQSDSKKLQDEYQKLVRGLQDANAAND 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANPVLP+++L+E VPGNIR AEHF+ FLKRF+EYLKTR++V V+ E+P +FL+
Sbjct: 300 EDQFMANPVLPEDVLKEAVPGNIRRAEHFIAFLKRFVEYLKTRMKVLHVIAETPTSFLQH 359
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ KDI+ I++KPLRFCA
Sbjct: 360 V-----------------------------------------KDIT---FIDKKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+R L+I+ + DF SL + ATLV++Y +GF +I+EPF + TVPNP+L F
Sbjct: 376 ERLTSLVRALQISLVEDFHSLQQVVAFATLVATYERGFILILEPFETENATVPNPILRFS 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+S+AIKPVF+RF++V+ITSGTLSPLDMYPK+L F V+ S+ M+LAR C LPMV
Sbjct: 436 CLDASIAIKPVFERFRSVIITSGTLSPLDMYPKMLQFNTVMQESYGMSLARNCFLPMV 493
Score = 199 bits (506), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 141/197 (71%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E++G +VD RC SLT+ VR++ AG ++P C+F++ + + + ++ GV+++
Sbjct: 119 SVRREKNGNVVDARCRSLTAGFVREQRLAGMDVPTCEFHDNLEDLEPHSLISNGVWTLDD 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ E G + CPYF R+ + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNI
Sbjct: 179 ITEYGEKTTRCPYFTVRRMLPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA +I +LE + E+K++DS KL++EY +LV GL+DA +A
Sbjct: 239 DNVCIESLSIDLTESSLRKASKSILSLEQKVNEVKQSDSKKLQDEYQKLVRGLQDANAAN 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANPVLP+++L+
Sbjct: 299 DEDQFMANPVLPEDVLK 315
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 88/142 (61%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLP+ FPY IYPEQY YM +LK +LDA G LLEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFYIDDLPILFPYPRIYPEQYQYMCDLKHSLDAGGIALLEMPSGTGKTISLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRT+ EI+K + EL RL Y E GL L+SRKNLC+H
Sbjct: 61 QHYP-EHRKLIYCSRTMSEIDKALAELKRLMAYRTSQLGYEEPFLGLGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 -------SVRREKNGNVVDARC 133
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 77/112 (68%), Gaps = 6/112 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GK D+GIM+ ADKR+ RSDKR+KL
Sbjct: 634 ARL-EFLRDTYQIREADFLTFDAMRHAAQCLGRVLRGKDDHGIMVLADKRYGRSDKRTKL 692
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLL 927
PKWIQ+Y+T+ TNLST+ ++ L+K++LR MAQPFT D G++ SLD LL
Sbjct: 693 PKWIQQYITEGATNLSTDMSLALAKKFLRTMAQPFTASDQEGISWWSLDDLL 744
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 76/134 (56%), Gaps = 5/134 (3%)
Query: 554 NYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVC 613
+YG L C +P VV + + + S FE R+D SV+RNYG +LV+ + + PDG+V
Sbjct: 479 SYGMSLAR-NCFLP-MVVTRGSDQVAISSKFEARNDPSVVRNYGNILVEFSKITPDGLVA 536
Query: 614 FFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLT 673
FF SYLYLES+V+SW GI+D + K KL+ +ET D ++ + +GR L
Sbjct: 537 FFPSYLYLESIVSSWQSMGILDEVWKYKLILVETPDPHETTLALETYRAACTNGRGAVLL 596
Query: 674 SSSVRDRHKAGENI 687
S + R K E +
Sbjct: 597 SVA---RGKVSEGV 607
>gi|380094849|emb|CCC07351.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 806
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/418 (47%), Positives = 275/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G IVD RC SLT+ V+++ + GEN+ C +++ D + + + G++++ L
Sbjct: 120 VKREKSGTIVDARCRSLTAGFVKEKREKGENVETCIYHDNLDLLEQGNLIPNGIWTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF AR+ + + +++YSYHYLLDPKIA VSK+L++ +VVFDEAHNID
Sbjct: 180 LRYGEEKKQCPYFTARRMMQYCNVIIYSYHYLLDPKIAERVSKDLSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I + ++ +A Q LE + EMK++D KL+ EY +LVEGL+ R+
Sbjct: 240 NVCIESLSTDITQDSLMRATRGAQNLEAKIAEMKDSDQEKLQSEYEKLVEGLKGLDEGRQ 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANP LPD++L+E VPGNIR AEHFV FL+RFIEYLKTR++V+QV+ E+P +FL
Sbjct: 300 EDAFMANPTLPDDLLKEAVPGNIRRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLA- 358
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPLRFCA
Sbjct: 359 ----------------------HLKE------------YTF---------IEKKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EP+ PNPVL+F
Sbjct: 376 ERLTSLVRTLELTNIEDYRPLQEVATFATLVATYEKGFLLILEPYESDTAKTPNPVLHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGT+SPL+MYPK+LNF+ V+ S++MTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLNFETVVQESYAMTLARRSFLPMI 493
Score = 195 bits (496), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 132/197 (67%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G IVD RC SLT+ V+++ + GEN+ C +++ D + + + G++++
Sbjct: 119 SVKREKSGTIVDARCRSLTAGFVKEKREKGENVETCIYHDNLDLLEQGNLIPNGIWTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L G E CPYF AR+ + + +++YSYHYLLDPKIA VSK+L++ +VVFDEAHNI
Sbjct: 179 LLRYGEEKKQCPYFTARRMMQYCNVIIYSYHYLLDPKIAERVSKDLSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I + ++ +A Q LE + EMK++D KL+ EY +LVEGL+ R
Sbjct: 239 DNVCIESLSTDITQDSLMRATRGAQNLEAKIAEMKDSDQEKLQSEYEKLVEGLKGLDEGR 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANP LPD++L+
Sbjct: 299 QEDAFMANPTLPDDLLK 315
Score = 142 bits (358), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 78/142 (54%), Positives = 92/142 (64%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYMV+LKK LDA G+C+LEMPSGTGKT +LLSLIVAY
Sbjct: 1 MEFNIDDLPVLFPYPRIYPEQYAYMVDLKKTLDAGGNCVLEMPSGTGKTVTLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRT+ EIEK + EL L + + E GL L+SRKNLC+H
Sbjct: 61 QYYP-EHRKLIYCSRTMSEIEKALVELRALMKFRAERLGREEEFRGLGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 -------SVKREKSGTIVDARC 133
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 74/121 (61%), Gaps = 8/121 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR++L
Sbjct: 634 ARL-EFLRETYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFMK--KRAQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + L D TNLST+ AV ++ +L+QMAQPF+ +D GV++ + L + AE
Sbjct: 691 PKWINQALLDANTNLSTDMAVGNARAFLKQMAQPFSSKDQEGVSIWGMKDLRRHQEKMAE 750
Query: 936 E 936
+
Sbjct: 751 D 751
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ + F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 503 ISTSFQVRNEPSVVRNYGNLLTEFARMTPDGMVVFFPSYLYMESIISMWQGMGILDEVWK 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 563 HKLILVETPDAQET 576
>gi|336271859|ref|XP_003350687.1| hypothetical protein SMAC_02358 [Sordaria macrospora k-hell]
Length = 796
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/418 (47%), Positives = 275/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G IVD RC SLT+ V+++ + GEN+ C +++ D + + + G++++ L
Sbjct: 110 VKREKSGTIVDARCRSLTAGFVKEKREKGENVETCIYHDNLDLLEQGNLIPNGIWTLDGL 169
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF AR+ + + +++YSYHYLLDPKIA VSK+L++ +VVFDEAHNID
Sbjct: 170 LRYGEEKKQCPYFTARRMMQYCNVIIYSYHYLLDPKIAERVSKDLSKDCIVVFDEAHNID 229
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I + ++ +A Q LE + EMK++D KL+ EY +LVEGL+ R+
Sbjct: 230 NVCIESLSTDITQDSLMRATRGAQNLEAKIAEMKDSDQEKLQSEYEKLVEGLKGLDEGRQ 289
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANP LPD++L+E VPGNIR AEHFV FL+RFIEYLKTR++V+QV+ E+P +FL
Sbjct: 290 EDAFMANPTLPDDLLKEAVPGNIRRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLA- 348
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPLRFCA
Sbjct: 349 ----------------------HLKE------------YTF---------IEKKPLRFCA 365
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EP+ PNPVL+F
Sbjct: 366 ERLTSLVRTLELTNIEDYRPLQEVATFATLVATYEKGFLLILEPYESDTAKTPNPVLHFT 425
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGT+SPL+MYPK+LNF+ V+ S++MTLAR LPM+
Sbjct: 426 CLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLNFETVVQESYAMTLARRSFLPMI 483
Score = 195 bits (496), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 132/197 (67%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G IVD RC SLT+ V+++ + GEN+ C +++ D + + + G++++
Sbjct: 109 SVKREKSGTIVDARCRSLTAGFVKEKREKGENVETCIYHDNLDLLEQGNLIPNGIWTLDG 168
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L G E CPYF AR+ + + +++YSYHYLLDPKIA VSK+L++ +VVFDEAHNI
Sbjct: 169 LLRYGEEKKQCPYFTARRMMQYCNVIIYSYHYLLDPKIAERVSKDLSKDCIVVFDEAHNI 228
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I + ++ +A Q LE + EMK++D KL+ EY +LVEGL+ R
Sbjct: 229 DNVCIESLSTDITQDSLMRATRGAQNLEAKIAEMKDSDQEKLQSEYEKLVEGLKGLDEGR 288
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANP LPD++L+
Sbjct: 289 QEDAFMANPTLPDDLLK 305
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 82/142 (57%), Gaps = 20/142 (14%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPE LDA G+C+LEMPSGTGKT +LLSLIVAY
Sbjct: 1 MEFNIDDLPVLFPYPRIYPE----------TLDAGGNCVLEMPSGTGKTVTLLSLIVAYQ 50
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRT+ EIEK + EL L + + E GL L+SRKNLC+H
Sbjct: 51 QYYP-EHRKLIYCSRTMSEIEKALVELRALMKFRAERLGREEEFRGLGLTSRKNLCLHP- 108
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 109 -------SVKREKSGTIVDARC 123
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 74/121 (61%), Gaps = 8/121 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR++L
Sbjct: 624 ARL-EFLRETYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFMK--KRAQL 680
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + L D TNLST+ AV ++ +L+QMAQPF+ +D GV++ + L + AE
Sbjct: 681 PKWINQALLDANTNLSTDMAVGNARAFLKQMAQPFSSKDQEGVSIWGMKDLRRHQEKMAE 740
Query: 936 E 936
+
Sbjct: 741 D 741
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ + F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 493 ISTSFQVRNEPSVVRNYGNLLTEFARMTPDGMVVFFPSYLYMESIISMWQGMGILDEVWK 552
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 553 HKLILVETPDAQET 566
>gi|393910719|gb|EJD76012.1| Ercc2 protein [Loa loa]
Length = 705
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/418 (48%), Positives = 277/418 (66%), Gaps = 45/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS R G +VDG C LT+S VR + K ++P C F+EK D + GVY++ L
Sbjct: 80 VSSLRQGSLVDGACQKLTASFVRAKRKLRPDLPCCTFFEKLDE-QEDFNHLDGVYNLQNL 138
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+++G++ G+CPYFL+R + A IVVYSYHY+LDPKIA +VSK +R S VVFDEAHNID
Sbjct: 139 RKLGQQNGICPYFLSRNVVDRAHIVVYSYHYILDPKIAELVSKNFSRHSCVVFDEAHNID 198
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++S+SV + + T+EKA + LE ++ ++E +S +LR EY RLVEGL+ + R
Sbjct: 199 NVCIESMSVSLTKTTVEKATQKLGILEEHVQRLREENSEQLRVEYDRLVEGLKRVEEERT 258
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D VLANPVLPD IL+E VPG IR A HF+ FL+RF EYLK R+R + V+ E+PA FL+D
Sbjct: 259 NDQVLANPVLPDMILKEAVPGTIRNALHFISFLRRFNEYLKHRMRTKTVLIENPAAFLRD 318
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
I+ + I+R+PLRFCA
Sbjct: 319 --------------------------------------------INDLMHIDRRPLRFCA 334
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ER ASL RTLE+ +++DFSSLV+IT+ ATLVS+Y +GF I++EP +K+ + L+
Sbjct: 335 ERFASLTRTLELADISDFSSLVLITNFATLVSTYARGFTIVIEPLDEKSGIGHSCTLHLS 394
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+S+AI+P+F R++TVVITSGTLSPLDMYPKIL+F P +M S SMTLARPC+ P++
Sbjct: 395 CMDASVAIRPIFQRYRTVVITSGTLSPLDMYPKILDFDPAVMASLSMTLARPCIAPLI 452
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/199 (50%), Positives = 137/199 (68%), Gaps = 1/199 (0%)
Query: 653 SRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSI 712
+ SVS R G +VDG C LT+S VR + K ++P C F+EK D + GVY++
Sbjct: 77 NESVSSLRQGSLVDGACQKLTASFVRAKRKLRPDLPCCTFFEKLDE-QEDFNHLDGVYNL 135
Query: 713 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAH 772
L+++G++ G+CPYFL+R + A IVVYSYHY+LDPKIA +VSK +R S VVFDEAH
Sbjct: 136 QNLRKLGQQNGICPYFLSRNVVDRAHIVVYSYHYILDPKIAELVSKNFSRHSCVVFDEAH 195
Query: 773 NIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS 832
NIDNVC++S+SV + + T+EKA + LE ++ ++E +S +LR EY RLVEGL+ +
Sbjct: 196 NIDNVCIESMSVSLTKTTVEKATQKLGILEEHVQRLREENSEQLRVEYDRLVEGLKRVEE 255
Query: 833 ARETDVVLANPVLPDEILQ 851
R D VLANPVLPD IL+
Sbjct: 256 ERTNDQVLANPVLPDMILK 274
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 75/115 (65%), Gaps = 6/115 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + L+GK+DYG+MIFADKRF+R DK KL
Sbjct: 578 ARL-EYLREQLGIRENDFLTFDAMRQAAQCMGRALRGKSDYGLMIFADKRFSRKDKMGKL 636
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKE 930
P+WIQEY+T NLS EEA ++++W MAQ FT++ LG++LL+ + L EKE
Sbjct: 637 PRWIQEYITPGNVNLSIEEAAIIARKWFPLMAQSFTKDHQLGISLLTEEMLREKE 691
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 82/149 (55%), Gaps = 22/149 (14%)
Query: 465 MPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK-HNEE 523
MPSGTGKT SLLSL+VAYM P + KL+YCSRT+PEIEK VEEL LF YY + +
Sbjct: 1 MPSGTGKTVSLLSLVVAYMLRFPDHLDKLVYCSRTIPEIEKCVEELRNLFKYYEQCDGKP 60
Query: 524 INMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC-------------VVPDGV 570
++ + LS+RKNLCI+ + +S +R LVD AC + PD
Sbjct: 61 PSLFAVALSARKNLCIN------ESVSSLRQGS--LVDGACQKLTASFVRAKRKLRPDLP 112
Query: 571 VCFFTSYLYLESVFETRDDISVIRNYGQL 599
C F L + F D + ++N +L
Sbjct: 113 CCTFFEKLDEQEDFNHLDGVYNLQNLRKL 141
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 17/97 (17%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P +V + + S FE+R+D +VIRNYG L++++ +VPDGVV F
Sbjct: 447 CIAP-LIVSKGNDQVAMTSRFESREDAAVIRNYGSLVLELVSLVPDGVVVFLP------- 498
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKER 660
GIID L K KLLFIET DAL++ S++ E+
Sbjct: 499 --------GIIDELLKYKLLFIETTDALET-SIALEK 526
Score = 47.4 bits (111), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 13/56 (23%)
Query: 519 KHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFF 574
K N+++ MT S FE+R+D +VIRNYG L++++ +VPDGVV F
Sbjct: 455 KGNDQVAMT-------------SRFESREDAAVIRNYGSLVLELVSLVPDGVVVFL 497
>gi|336468265|gb|EGO56428.1| hypothetical protein NEUTE1DRAFT_130389 [Neurospora tetrasperma
FGSC 2508]
gi|350289484|gb|EGZ70709.1| putative excision repair protein rhp3 [Neurospora tetrasperma FGSC
2509]
Length = 806
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/418 (47%), Positives = 274/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G IVD RC SLT+ V+++ + GEN+ C +++ D + + G++++ L
Sbjct: 120 VKREKSGAIVDARCRSLTAGFVKEKREKGENVETCVYHDNLDLLEPHNLIPNGIWTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF AR+ + + +++YSYHYLLDPKIA VSK+L++ +VVFDEAHNID
Sbjct: 180 MRYGEEKKQCPYFTARRMMQYCNVIIYSYHYLLDPKIAERVSKDLSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I + ++ +A Q LE + EMK++D KL+ EY +LVEGL+ R+
Sbjct: 240 NVCIESLSTDITQDSLMRATRGAQNLEAKISEMKDSDQEKLQSEYEKLVEGLKGLDEGRQ 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANP LPD++L+E VPGNIR AEHFV FL+RFIEYLKTR++V+QV+ E+P +FL
Sbjct: 300 EDAFMANPTLPDDLLKEAVPGNIRRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLA- 358
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPLRFCA
Sbjct: 359 ----------------------HLKE------------YTF---------IEKKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EP+ PNPVL+F
Sbjct: 376 ERLTSLVRTLELTNIEDYRPLQEVATFATLVATYEKGFLLILEPYESDTAKTPNPVLHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGT+SPL+MYPK+LNF+ V+ S++MTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLNFETVVQESYAMTLARRSFLPMI 493
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 131/197 (66%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G IVD RC SLT+ V+++ + GEN+ C +++ D + + G++++
Sbjct: 119 SVKREKSGAIVDARCRSLTAGFVKEKREKGENVETCVYHDNLDLLEPHNLIPNGIWTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L G E CPYF AR+ + + +++YSYHYLLDPKIA VSK+L++ +VVFDEAHNI
Sbjct: 179 LMRYGEEKKQCPYFTARRMMQYCNVIIYSYHYLLDPKIAERVSKDLSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I + ++ +A Q LE + EMK++D KL+ EY +LVEGL+ R
Sbjct: 239 DNVCIESLSTDITQDSLMRATRGAQNLEAKISEMKDSDQEKLQSEYEKLVEGLKGLDEGR 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANP LPD++L+
Sbjct: 299 QEDAFMANPTLPDDLLK 315
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 94/144 (65%), Gaps = 14/144 (9%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYMV+LKK LDA G+C+LEMPSGTGKT +LLSLIVAY
Sbjct: 1 MEFNIDDLPVLFPYPRIYPEQYAYMVDLKKTLDAGGNCVLEMPSGTGKTVTLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY---YIKHNEEINMTGLVLSSRKNLCIH 540
+P + KL+YCSRT+ EIEK + EL L + + H EE GL L+SRKNLC+H
Sbjct: 61 QYYP-EHRKLIYCSRTMSEIEKALVELRALMKFRAERLGHEEEFR--GLGLTSRKNLCLH 117
Query: 541 SEFETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 118 P--------SVKREKSGAIVDARC 133
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 74/121 (61%), Gaps = 8/121 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR++L
Sbjct: 634 ARL-EFLRETYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFMK--KRAQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + TNLST+ AV ++ +L+QMAQPF+ +D GV++ ++ L + AE
Sbjct: 691 PKWINQAFLEANTNLSTDMAVGNARAFLKQMAQPFSAKDQEGVSIWGMEDLKRHQEKMAE 750
Query: 936 E 936
+
Sbjct: 751 D 751
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ + F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 503 ISTSFQVRNEPSVVRNYGNLLTEFARITPDGMVVFFPSYLYMESIISMWQGMGILDEVWK 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 563 HKLILVETPDAQET 576
>gi|358380117|gb|EHK17796.1| hypothetical protein TRIVIDRAFT_214193 [Trichoderma virens Gv29-8]
Length = 763
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/418 (48%), Positives = 275/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G IVD RC SLT+ V+++ GEN+ VC +++ D + + GV+S L
Sbjct: 92 VKREKSGSIVDARCRSLTAGFVKEKKDRGENVDVCTYHDNLDLLEPHNLIPNGVWSFDAL 151
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G E CPYF AR+ + + +V++SYHYLLDPKIA VSK+ ++ +VVFDEAHNID
Sbjct: 152 LKYGEEHKQCPYFTARRMMEYCNVVIFSYHYLLDPKIAERVSKDFSKDCIVVFDEAHNID 211
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I +I KA + Q LE + EM+E D +L+ EY +LV+GLR+A +R+
Sbjct: 212 NVCIESLSTDITEDSIRKATRSAQHLERRIAEMRETDQEQLQNEYEKLVQGLREADESRQ 271
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANP LPD++L+E VPGNIR AEHFV FLKRF+EYLKTR++V+QV+ E+P +FL
Sbjct: 272 EDAFMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFLEYLKTRMKVRQVISETPPSFLA- 330
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPLRFCA
Sbjct: 331 ----------------------HLKEH------------TF---------IEKKPLRFCA 347
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ +L + ATLV++Y KGF +I+EP+ VPNP L+F
Sbjct: 348 ERLTSLVRTLELTNIEDYQALQEVATFATLVATYEKGFLLILEPYESDTAEVPNPTLHFT 407
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AI+PVF+RF +V+ITSGT+SPL+MYPK+L+F VI S+SMTLAR LPM+
Sbjct: 408 CLDAAIAIRPVFERFYSVIITSGTISPLEMYPKMLDFSTVIQESYSMTLARRSFLPMI 465
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 132/197 (67%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G IVD RC SLT+ V+++ GEN+ VC +++ D + + GV+S
Sbjct: 91 SVKREKSGSIVDARCRSLTAGFVKEKKDRGENVDVCTYHDNLDLLEPHNLIPNGVWSFDA 150
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L + G E CPYF AR+ + + +V++SYHYLLDPKIA VSK+ ++ +VVFDEAHNI
Sbjct: 151 LLKYGEEHKQCPYFTARRMMEYCNVVIFSYHYLLDPKIAERVSKDFSKDCIVVFDEAHNI 210
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I +I KA + Q LE + EM+E D +L+ EY +LV+GLR+A +R
Sbjct: 211 DNVCIESLSTDITEDSIRKATRSAQHLERRIAEMRETDQEQLQNEYEKLVQGLREADESR 270
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANP LPD++L+
Sbjct: 271 QEDAFMANPALPDDLLK 287
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 68/113 (60%), Gaps = 10/113 (8%)
Query: 453 KALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512
+ LDA GHC+LEMPSGTGKT SLLSLIVAY P + KL+YCSRT+ EIEK + EL
Sbjct: 2 QTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQQHMP-EKRKLIYCSRTMSEIEKALVELQS 60
Query: 513 LFDYYIKH-NEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
L Y + E GL L+SRKNLC+H SV R +VD C
Sbjct: 61 LMKYRAEQLGYEEEFRGLGLTSRKNLCLHP--------SVKREKSGSIVDARC 105
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYG+M+ AD+RF + KR++LPKWI + L D TNLST+ AV ++R+L+ MAQ
Sbjct: 638 VLRGKDDYGVMVLADRRFQK--KRTQLPKWINQGLQDADTNLSTDMAVSSARRFLKTMAQ 695
Query: 909 PFTREDMLGVALLSLDQLLEKEH 931
PF +D G++ + L++ +
Sbjct: 696 PFRSKDQEGISTWGYEDLMQHQQ 718
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 52/72 (72%)
Query: 582 SVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRK 641
S F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W GI+D + K K
Sbjct: 477 SSFQVRNEPSVVRNYGNLLTEFARITPDGMVVFFPSYLYMESIISMWQGMGILDEVWKYK 536
Query: 642 LLFIETQDALDS 653
L+ +ET DA ++
Sbjct: 537 LILVETPDAQET 548
>gi|225681891|gb|EEH20175.1| TFIIH basal transcription factor complex helicase subunit
[Paracoccidioides brasiliensis Pb03]
Length = 773
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/418 (47%), Positives = 274/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G IVD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++ +
Sbjct: 96 VKREKSGTIVDARCRSLTAGFVKEKKERGEDVELCIYHENLDLLEPSNLVPPGVFTLDDM 155
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF R+ + +++YSYHYLLDPKIA VS+EL++ S+VVFDEAHNID
Sbjct: 156 IKYGEQHKQCPYFSVRRMMPFCNVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNID 215
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA LE + EMK +D+ KL+ EY +LVEGLR+A AR+
Sbjct: 216 NVCIESLSIDLTEDSLRKASRGANNLERRIDEMKSSDAEKLQNEYQKLVEGLREADEARQ 275
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ ++ANP LPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V + E+P +FL
Sbjct: 276 EEQLMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPPSFL-- 333
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
LKD++ IERKPLRFCA
Sbjct: 334 ---------------------------------------AHLKDLT---FIERKPLRFCA 351
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ NL D+ L + ATL ++Y KGF +I+EPF TVPNP+L+F
Sbjct: 352 ERLTSLVRTLELMNLEDYQPLQQVAAFATLAATYEKGFLLILEPFESDTATVPNPILHFT 411
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGTLSPL+MYPK+L F V+ S+SMTLAR LPM+
Sbjct: 412 CLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFTTVLQESYSMTLARRSFLPMI 469
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 136/197 (69%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G IVD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++
Sbjct: 95 SVKREKSGTIVDARCRSLTAGFVKEKKERGEDVELCIYHENLDLLEPSNLVPPGVFTLDD 154
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ + G + CPYF R+ + +++YSYHYLLDPKIA VS+EL++ S+VVFDEAHNI
Sbjct: 155 MIKYGEQHKQCPYFSVRRMMPFCNVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNI 214
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA LE + EMK +D+ KL+ EY +LVEGLR+A AR
Sbjct: 215 DNVCIESLSIDLTEDSLRKASRGANNLERRIDEMKSSDAEKLQNEYQKLVEGLREADEAR 274
Query: 835 ETDVVLANPVLPDEILQ 851
+ + ++ANP LPD++L+
Sbjct: 275 QEEQLMANPALPDDLLK 291
Score = 105 bits (263), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 72/118 (61%), Gaps = 10/118 (8%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M +LKK LDA GHC+LEMPSGTGKT SLLSLI+AY P + KL+YCSRT+ EIEK +
Sbjct: 1 MCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIIAYQQHKP-EQRKLIYCSRTMSEIEKAL 59
Query: 508 EELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
EL L Y + + GL L+SRKNLC+H SV R +VD C
Sbjct: 60 AELKALMKYRAQQLGYTEDFRGLGLTSRKNLCLHP--------SVKREKSGTIVDARC 109
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 76/126 (60%), Gaps = 9/126 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR++L
Sbjct: 610 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFQK--KRAQL 666
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + ++ TNLST+ A+ +K +LR MAQPF +D G++ S+ LE+ +
Sbjct: 667 PKWISQAMLESETNLSTDMAMATAKSFLRTMAQPFKSKDQEGISTWSIAD-LERHVKKQR 725
Query: 936 EEEVPR 941
EEE R
Sbjct: 726 EEESKR 731
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG LL++ + + PDG+V FF SYLY+ES+++ W GI+D++
Sbjct: 479 ISSSFQIRNDPGVVRNYGNLLLEFSRITPDGIVVFFPSYLYMESIISMWQGMGILDSIWN 538
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ +S
Sbjct: 539 YKLILVETPDSQES 552
>gi|407928326|gb|EKG21185.1| Xeroderma pigmentosum group D protein [Macrophomina phaseolina MS6]
Length = 788
Score = 411 bits (1056), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/418 (47%), Positives = 273/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E++G +VD RC SLT+ V+++ + GE++ +C +++ D + + PGV++ +
Sbjct: 120 VKREKNGAVVDARCRSLTAGFVKEKKERGEDVDLCIYHDNLDLLEPHNLIPPGVFTFDDI 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G + CPYF AR+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNID
Sbjct: 180 LRYGEDHKQCPYFTARRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA LE + EMK D+ KL EY +LVEGLR+A AR+
Sbjct: 240 NVCIESLSIDLTEDSLRKATRGAHNLERKITEMKATDAEKLSNEYKKLVEGLREADQARD 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D ++NP LPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V VV E+P +FL
Sbjct: 300 EDAFMSNPALPDDLLKEAVPGNIRRAEHFVSFLKRFIEYLKTRMKVLHVVAETPPSFLN- 358
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IERKPLRFCA
Sbjct: 359 ----------------------HLKE------------LTF---------IERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y GF +I+EP+ + TVPNP+ +F
Sbjct: 376 ERLTSLVRTLELTNIEDYQPLQEVATFATLVATYETGFLLILEPYEAEGATVPNPIFHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+S+AIKPVF+RF +V+ITSGT+SPLDMYPK+LNF V+ S++MTLAR LPM+
Sbjct: 436 CLDASIAIKPVFERFSSVIITSGTISPLDMYPKMLNFSTVVQESYTMTLARKSFLPMI 493
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 132/197 (67%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E++G +VD RC SLT+ V+++ + GE++ +C +++ D + + PGV++
Sbjct: 119 SVKREKNGAVVDARCRSLTAGFVKEKKERGEDVDLCIYHDNLDLLEPHNLIPPGVFTFDD 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ G + CPYF AR+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNI
Sbjct: 179 ILRYGEDHKQCPYFTARRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA LE + EMK D+ KL EY +LVEGLR+A AR
Sbjct: 239 DNVCIESLSIDLTEDSLRKATRGAHNLERKITEMKATDAEKLSNEYKKLVEGLREADQAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ D ++NP LPD++L+
Sbjct: 299 DEDAFMSNPALPDDLLK 315
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 90/142 (63%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID+LPV FPY IYPEQY YM +LK+ LDA G+C+LEMPSGTGKT SLLSLI+AY
Sbjct: 1 MKFNIDELPVLFPYPRIYPEQYKYMCDLKRTLDAGGNCILEMPSGTGKTVSLLSLIIAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
P + KL+YCSRT+ EIEK + EL L Y + E + GL L+SRKNLC+H
Sbjct: 61 QHQP-EKRKLIYCSRTMSEIEKALHELKALMKYRTEQLGYEEDFRGLGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 -------SVKREKNGAVVDARC 133
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 52/74 (70%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F R+D +V++NYG LL + + PDG+V FF SYLY+ESV++ W GI+D++ +
Sbjct: 503 ISSSFGVRNDPNVVKNYGVLLREFCKLTPDGIVVFFPSYLYMESVISQWQGMGILDDVWR 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 563 YKLILVETPDAQET 576
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 75/122 (61%), Gaps = 8/122 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYGIM+ ADKRF +KR++L
Sbjct: 634 ARL-EFLRETYHIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADKRF--RNKRTQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI ++L+D N+S ++A ++K++LR M++ + + G+++ ++ L + + + E
Sbjct: 691 PKWIAQHLSDADANMSIDQAAAMAKKFLRDMSKSYGHQLAEGISVWGVEDLRKFQKQQQE 750
Query: 936 EE 937
+E
Sbjct: 751 DE 752
>gi|389638466|ref|XP_003716866.1| DNA repair helicase rad15 [Magnaporthe oryzae 70-15]
gi|351642685|gb|EHA50547.1| DNA repair helicase rad15 [Magnaporthe oryzae 70-15]
Length = 795
Score = 411 bits (1056), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/418 (47%), Positives = 276/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G IVD RC LT+ V+++ + GE++ +C +++ D + + GV+++ L
Sbjct: 120 VKREKSGAIVDARCRGLTAGFVKEKKEKGEDVELCVYHDNLDLLEPHNLIPNGVWTLEGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF +R+ + + +++YSYHYLLDPKIA VSKEL+R S++VFDEAHNID
Sbjct: 180 LRYGEEHKQCPYFTSRRMMQYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I ++ KA LE + EM+E D +L +EY +LVEGLR+A AR+
Sbjct: 240 NVCIESLSTDITEDSLRKASRGAMNLEKRINEMRETDQNQLEDEYRKLVEGLREADEARQ 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D ++NPVLPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V +V+ E+P +FL
Sbjct: 300 EDAFMSNPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLEVISETPPSFLA- 358
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPLRFCA
Sbjct: 359 ----------------------HLKE------------YTF---------IEKKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ DF L + ATLV++Y KGF +++EP+ + +PNPVL+F
Sbjct: 376 ERLTSLVRTLELTNIEDFQPLQEVATFATLVATYDKGFLLLLEPYESEKSQIPNPVLHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVF+RF+TV+ITSGTLSPL+MYPK+L F V+ S++MTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFERFKTVIITSGTLSPLEMYPKMLGFDAVVQESYAMTLARRSFLPMI 493
Score = 196 bits (499), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 133/197 (67%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G IVD RC LT+ V+++ + GE++ +C +++ D + + GV+++
Sbjct: 119 SVKREKSGAIVDARCRGLTAGFVKEKKEKGEDVELCVYHDNLDLLEPHNLIPNGVWTLEG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L G E CPYF +R+ + + +++YSYHYLLDPKIA VSKEL+R S++VFDEAHNI
Sbjct: 179 LLRYGEEHKQCPYFTSRRMMQYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I ++ KA LE + EM+E D +L +EY +LVEGLR+A AR
Sbjct: 239 DNVCIESLSTDITEDSLRKASRGAMNLEKRINEMRETDQNQLEDEYRKLVEGLREADEAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ D ++NPVLPD++L+
Sbjct: 299 QEDAFMSNPVLPDDLLK 315
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/142 (54%), Positives = 91/142 (64%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM +LKK LD G+C+LEMPSGTGKT +LLSLIVAY
Sbjct: 1 MLFYIDDLPVIFPYPRIYPEQYAYMCDLKKTLDVGGNCVLEMPSGTGKTATLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRT+ EIEK + EL L Y +E + GL L+SRKNLC+H
Sbjct: 61 QHYP-EHRKLIYCSRTMSEIEKALAELKNLMKYRAGELGKEEDFRGLGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 -------SVKREKSGAIVDARC 133
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 76/124 (61%), Gaps = 9/124 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYGIM+ AD+RF + KR +L
Sbjct: 634 ARL-EFLRETYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFPK--KRPQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + L ++ N+ST+ AV ++++L+ MAQPF ED GV+ +++ L+K A+ E
Sbjct: 691 PKWINQALAESDVNMSTDMAVSAARKFLKSMAQPFRPEDQDGVSRWTIED-LKKHQAKVE 749
Query: 936 EEEV 939
+ +
Sbjct: 750 NDMI 753
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 51/74 (68%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F R+D +V+RNYGQLL + A + PDG+V FF SY Y+ES+++ W I+D + K
Sbjct: 503 ISSSFAVRNDPAVVRNYGQLLTEFAKITPDGMVVFFPSYFYMESIISMWQGMKILDEIWK 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 563 YKLILVETPDAQET 576
>gi|343425212|emb|CBQ68748.1| probable RAD3-DNA helicase/ATPase [Sporisorium reilianum SRZ2]
Length = 847
Score = 411 bits (1056), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/420 (48%), Positives = 279/420 (66%), Gaps = 47/420 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VS+ER GK+VD RC +TSS + R G + +CDF+EK + + GV ++
Sbjct: 154 VSRERKGKVVDARCRDMTSSWACEKGRQDPG-TVELCDFHEKLGKMEPGQLIPQGVRTLE 212
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
++KE R+ G+CPYF R+ + I++YS+HYLLDPKIA VSKE+++ ++VVFDEAHN
Sbjct: 213 EVKEYARDKGICPYFAIRRMLPFVDIIIYSFHYLLDPKIAEQVSKEMSKDAIVVFDEAHN 272
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + R ++ A +I L + E+K+ D++KL++EYARLVEGL++
Sbjct: 273 IDNVCIESLSIDLTRPMLDSAYRSINQLSEHVDEIKKTDASKLQDEYARLVEGLQEQGEQ 332
Query: 179 RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL 238
RE + +ANPVLPD++LQE VPGNIR AEHFV FLKRF+EYLKTR+RV VV E+PA+FL
Sbjct: 333 REAESFMANPVLPDDLLQEAVPGNIRRAEHFVAFLKRFVEYLKTRMRVLHVVAETPASFL 392
Query: 239 KDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRF 298
+ LKDI+ IERKPLRF
Sbjct: 393 Q-----------------------------------------HLKDITY---IERKPLRF 408
Query: 299 CAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLY 358
CAERL L+ TLE+T L +FS+L + ATLV++Y KGF +I+EPF + TVPNP+ +
Sbjct: 409 CAERLRMLVSTLELTRLDEFSALQKVAAFATLVATYDKGFLLILEPFETENATVPNPIFH 468
Query: 359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
F CLD+SLAI PVF+RF +V+ITSGT+SPLDMYPK+L F ++ S++MTL R C LP+V
Sbjct: 469 FTCLDASLAIAPVFERFSSVIITSGTISPLDMYPKMLKFDAIVQESYAMTLTRQCFLPLV 528
Score = 192 bits (488), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 92/198 (46%), Positives = 137/198 (69%), Gaps = 3/198 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
VS+ER GK+VD RC +TSS + R G + +CDF+EK + + GV ++
Sbjct: 154 VSRERKGKVVDARCRDMTSSWACEKGRQDPG-TVELCDFHEKLGKMEPGQLIPQGVRTLE 212
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
++KE R+ G+CPYF R+ + I++YS+HYLLDPKIA VSKE+++ ++VVFDEAHN
Sbjct: 213 EVKEYARDKGICPYFAIRRMLPFVDIIIYSFHYLLDPKIAEQVSKEMSKDAIVVFDEAHN 272
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC++SLS+ + R ++ A +I L + E+K+ D++KL++EYARLVEGL++
Sbjct: 273 IDNVCIESLSIDLTRPMLDSAYRSINQLSEHVDEIKKTDASKLQDEYARLVEGLQEQGEQ 332
Query: 834 RETDVVLANPVLPDEILQ 851
RE + +ANPVLPD++LQ
Sbjct: 333 REAESFMANPVLPDDLLQ 350
Score = 142 bits (359), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 90/154 (58%), Gaps = 36/154 (23%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID+LPV FPY IYPEQYAYM +LK+ LDA GHC+LEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFYIDELPVLFPYPKIYPEQYAYMTDLKRTLDANGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN---------------------- 521
HP KL+YCSRTVPEIEK + EL RL +Y ++N
Sbjct: 61 LFHPAK-RKLIYCSRTVPEIEKALAELKRLMEYRARYNVKEGEESEVLKNEAEGSNGPGE 119
Query: 522 EEINMTG-------------LVLSSRKNLCIHSE 542
+ M G L LSSRKNLCIH +
Sbjct: 120 HNVEMKGKGKAGGQMEDILALGLSSRKNLCIHPD 153
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 80/125 (64%), Gaps = 6/125 (4%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C +P V+ + + + S FE R+D +V+RNYG +L++ A VPDG+V FF SYLY+ES
Sbjct: 523 CFLP-LVITRGSDQVAISSRFEVRNDPAVVRNYGSILIEYAKCVPDGIVAFFPSYLYMES 581
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHK 682
+VA+W+D GI+D + K KL+FIET DA ++ S++ E + D GR L S + R K
Sbjct: 582 IVAAWHDMGILDEVWKYKLIFIETPDAPET-SIALENYRRACDNGRGAILLSVA---RGK 637
Query: 683 AGENI 687
E I
Sbjct: 638 VSEGI 642
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 79/124 (63%), Gaps = 10/124 (8%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GKTDYG+M+FADKRFAR+DKR+KL
Sbjct: 669 ARL-EFLRDNFRIRENDFLTFDAMRHAAQCVGRVLRGKTDYGLMVFADKRFARADKRNKL 727
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI +Y+ + +NLST+ A+ SK ++R MAQP+ G +SL +L + E +A+
Sbjct: 728 PKWIAQYIKETHSNLSTDMAIVESKLFIRSMAQPYPE----GKNGVSLWELADIESRQAK 783
Query: 936 EEEV 939
E E
Sbjct: 784 ERET 787
>gi|327351176|gb|EGE80033.1| DNA repair helicase RAD3 [Ajellomyces dermatitidis ATCC 18188]
Length = 773
Score = 411 bits (1056), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/418 (47%), Positives = 277/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++ +
Sbjct: 96 VKREKSGAVVDARCRSLTAGFVKEKKERGEDVELCIYHENLDLLEPSNLVPPGVFTLDDI 155
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF R+ + +++YSYHYLLDPKIA VS+EL++ S+VVFDEAHNID
Sbjct: 156 IKYGEQHKQCPYFSIRRMMPFCNVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNID 215
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA LE ++EMK +D+ KL+ EY +LVEGLR+A AR+
Sbjct: 216 NVCIESLSIDLTEDSLRKASRGATNLERKIEEMKSSDAEKLQNEYQKLVEGLREADEARQ 275
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ ++ANP LPD++L+E VPGNIR AEHFV FLKRFIEYLKTR+++ + E+P +FL
Sbjct: 276 EEQLMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKITHTISETPLSFL-- 333
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
LKD++ IERKPLRFCA
Sbjct: 334 ---------------------------------------AHLKDLT---FIERKPLRFCA 351
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERLASL+RTLE+ NL D+ L + ATL ++Y KGF +I+EPF + TVPNP+L+F
Sbjct: 352 ERLASLVRTLELMNLEDYQPLQQVAAFATLAATYEKGFLLILEPFESETATVPNPILHFT 411
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V++TSGTLSPL+MYPK+L F V+ S++MTLAR LPMV
Sbjct: 412 CLDAAIAIKPVFDRFSSVIVTSGTLSPLEMYPKMLKFTTVLQESYTMTLARRSFLPMV 469
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 137/197 (69%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++
Sbjct: 95 SVKREKSGAVVDARCRSLTAGFVKEKKERGEDVELCIYHENLDLLEPSNLVPPGVFTLDD 154
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ + G + CPYF R+ + +++YSYHYLLDPKIA VS+EL++ S+VVFDEAHNI
Sbjct: 155 IIKYGEQHKQCPYFSIRRMMPFCNVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNI 214
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA LE ++EMK +D+ KL+ EY +LVEGLR+A AR
Sbjct: 215 DNVCIESLSIDLTEDSLRKASRGATNLERKIEEMKSSDAEKLQNEYQKLVEGLREADEAR 274
Query: 835 ETDVVLANPVLPDEILQ 851
+ + ++ANP LPD++L+
Sbjct: 275 QEEQLMANPALPDDLLK 291
Score = 106 bits (264), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 72/118 (61%), Gaps = 10/118 (8%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M +LKK LDA GHC+LEMPSGTGKT SLLSLI+AY P + KL+YCSRT+ EIEK +
Sbjct: 1 MCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIIAYQQHRP-EQRKLIYCSRTMSEIEKAL 59
Query: 508 EELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
EL L Y + + GL L+SRKNLC+H SV R +VD C
Sbjct: 60 AELKALMKYRTRQLGYAEDFRGLGLTSRKNLCLHP--------SVKREKSGAVVDARC 109
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 75/123 (60%), Gaps = 10/123 (8%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +++GK DYG+M+ AD+RF + +RS+L
Sbjct: 610 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVIRGKDDYGVMVLADRRFQK--RRSQL 666
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + ++ TNLST+ AV +K +LR MAQPF D G++ SL L + H + +
Sbjct: 667 PKWISQAMLESETNLSTDMAVATAKSFLRTMAQPFKSRDQEGISTWSLADL--ELHVKKQ 724
Query: 936 EEE 938
+EE
Sbjct: 725 KEE 727
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 52/74 (70%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG LL++ + + PDG+V FF SYLY+ES+++ W GI+D +
Sbjct: 479 ISSSFQIRNDPGVVRNYGNLLLEFSRITPDGIVVFFPSYLYMESIISMWQGMGILDLVWN 538
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ +S
Sbjct: 539 YKLILVETPDSQES 552
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISV---IRN 595
I S F+ R+D V+RNYG LL++ + + PDG+V FF SYLY+ES+ + + + N
Sbjct: 479 ISSSFQIRNDPGVVRNYGNLLLEFSRITPDGIVVFFPSYLYMESIISMWQGMGILDLVWN 538
Query: 596 YGQLLVD 602
Y +LV+
Sbjct: 539 YKLILVE 545
>gi|5044|emb|CAA45870.1| rhp3+ [Schizosaccharomyces pombe]
Length = 772
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/418 (46%), Positives = 282/418 (67%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E++G +VD RC SLT+ VR++ AG ++P C+F++ + + + ++ GV+++ +
Sbjct: 120 VRREKNGNVVDARCRSLTAGFVREQRLAGMDVPTCEFHDNLEDLEPHSLISNGVWTLDDI 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
E G + CPYF R+ + +++YSYHYLLDPKIA VS+EL + +VVFDEAHNID
Sbjct: 180 TEYGEKTTRCPYFTVRRMLPFCNVIIYSYHYLLDPKIAERVSRELNKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA +I +LE + E+K++DS KL++EY +LV GL+DA +A +
Sbjct: 240 NVCIESLSIDLTESSLRKASKSILSLEQKVNEVKQSDSKKLQDEYQKLVRGLQDANAAND 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANPVLP+++L+E VPGNIR AEHF+ FLKRF+EYLKTR++V V+ E+P +FL+
Sbjct: 300 EDQFMANPVLPEDVLKEAVPGNIRRAEHFIAFLKRFVEYLKTRMKVLHVIAETPTSFLQH 359
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ KDI+ I++KPLRFCA
Sbjct: 360 V-----------------------------------------KDIT---FIDKKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+R L+I+ + DF SL + ATLV++Y +GF +I+EPF + TVPNP+L F
Sbjct: 376 ERLTSLVRALQISLVEDFHSLQQVVAFATLVATYERGFILILEPFETENATVPNPILRFS 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+S+AIKPVF+RF++V+ITSGTLSPLDMYPK+L F V+ S+ M+LAR C LPMV
Sbjct: 436 CLDASIAIKPVFERFRSVIITSGTLSPLDMYPKMLQFNTVMQESYGMSLARNCFLPMV 493
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 140/197 (71%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E++G +VD RC SLT+ VR++ AG ++P C+F++ + + + ++ GV+++
Sbjct: 119 SVRREKNGNVVDARCRSLTAGFVREQRLAGMDVPTCEFHDNLEDLEPHSLISNGVWTLDD 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ E G + CPYF R+ + +++YSYHYLLDPKIA VS+EL + +VVFDEAHNI
Sbjct: 179 ITEYGEKTTRCPYFTVRRMLPFCNVIIYSYHYLLDPKIAERVSRELNKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA +I +LE + E+K++DS KL++EY +LV GL+DA +A
Sbjct: 239 DNVCIESLSIDLTESSLRKASKSILSLEQKVNEVKQSDSKKLQDEYQKLVRGLQDANAAN 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANPVLP+++L+
Sbjct: 299 DEDQFMANPVLPEDVLK 315
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 88/142 (61%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLP+ FPY IYPEQY YM +LK +LDA G LLEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFYIDDLPILFPYPRIYPEQYQYMCDLKHSLDAGGIALLEMPSGTGKTISLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRT+ EI+K + EL RL Y E GL L+SRKNLC+H
Sbjct: 61 QHYP-EHRKLIYCSRTMSEIDKALAELKRLMAYRTSQLGYEEPFLGLGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 -------SVRREKNGNVVDARC 133
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 77/112 (68%), Gaps = 6/112 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GK D+GIM+ ADKR+ RSDKR+KL
Sbjct: 634 ARL-EFLRDTYQIREADFLTFDAMRHAAQCLGRVLRGKDDHGIMVLADKRYGRSDKRTKL 692
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLL 927
PKWIQ+Y+T+ TNLST+ ++ L+K++LR MAQPFT D G++ SLD LL
Sbjct: 693 PKWIQQYITEGATNLSTDMSLALAKKFLRTMAQPFTASDQEGISWWSLDDLL 744
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 76/134 (56%), Gaps = 5/134 (3%)
Query: 554 NYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVC 613
+YG L C +P VV + + + S FE R+D SV+RNYG +LV+ + + PDG+V
Sbjct: 479 SYGMSLAR-NCFLP-MVVTRGSDQVAISSKFEARNDPSVVRNYGNILVEFSKITPDGLVA 536
Query: 614 FFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLT 673
FF SYLYLES+V+SW GI+D + K KL+ +ET D ++ + +GR L
Sbjct: 537 FFPSYLYLESIVSSWQSMGILDEVWKYKLILVETPDPHETTLALETYRAACSNGRGAVLL 596
Query: 674 SSSVRDRHKAGENI 687
S + R K E +
Sbjct: 597 SVA---RGKVSEGV 607
>gi|342871641|gb|EGU74151.1| hypothetical protein FOXB_15338 [Fusarium oxysporum Fo5176]
Length = 761
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/418 (47%), Positives = 274/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G IVD RC SLT+ V+++ + GEN+ VC +++ D + + GV+S +
Sbjct: 92 VKREKSGAIVDARCRSLTAGFVKEKKERGENVDVCVYHDNLDLLEPHNLIPNGVWSFDDM 151
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF AR+ + + +V++SYHYLLDPKIA VSK+ ++ +VVFDEAHNID
Sbjct: 152 IRYGEEHKQCPYFTARRMMQYCNVVIFSYHYLLDPKIAERVSKDFSKDCIVVFDEAHNID 211
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I ++ KA Q LE + +M++ D +L+ EY +LV+GLRDA AR+
Sbjct: 212 NVCIESLSTDITEDSLRKATRGAQNLENKISQMRDTDQQQLQNEYEKLVQGLRDADEARQ 271
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANP LP+++L+E VPGNIR AEHF+ FLKRFIEYLKTR++V+QV+ E+P +FL
Sbjct: 272 EDAFMANPALPEDLLKEAVPGNIRRAEHFIAFLKRFIEYLKTRMKVRQVISETPPSFLA- 330
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HL+ TF IE+KPLRFCA
Sbjct: 331 ----------------------HLREH------------TF---------IEKKPLRFCA 347
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EPF VPNPVL+F
Sbjct: 348 ERLTSLVRTLELTNIEDYQPLQEVATFATLVATYEKGFLLILEPFESDTAEVPNPVLHFT 407
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGT+SPL++YPK+L+F VI S++MTLAR +PM+
Sbjct: 408 CLDAAIAIKPVFDRFYSVIITSGTISPLEIYPKMLDFSTVIQESYAMTLARRSFMPMI 465
Score = 196 bits (497), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 131/197 (66%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G IVD RC SLT+ V+++ + GEN+ VC +++ D + + GV+S
Sbjct: 91 SVKREKSGAIVDARCRSLTAGFVKEKKERGENVDVCVYHDNLDLLEPHNLIPNGVWSFDD 150
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ G E CPYF AR+ + + +V++SYHYLLDPKIA VSK+ ++ +VVFDEAHNI
Sbjct: 151 MIRYGEEHKQCPYFTARRMMQYCNVVIFSYHYLLDPKIAERVSKDFSKDCIVVFDEAHNI 210
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I ++ KA Q LE + +M++ D +L+ EY +LV+GLRDA AR
Sbjct: 211 DNVCIESLSTDITEDSLRKATRGAQNLENKISQMRDTDQQQLQNEYEKLVQGLRDADEAR 270
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANP LP+++L+
Sbjct: 271 QEDAFMANPALPEDLLK 287
Score = 99.8 bits (247), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 68/113 (60%), Gaps = 10/113 (8%)
Query: 453 KALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512
+ LDA GHC+LEMPSGTGKT SLLSLIVAY P + KL+YCSRT+ EIEK + EL
Sbjct: 2 QTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQQYMP-EKRKLIYCSRTMSEIEKALVELKS 60
Query: 513 LFDYYIKH-NEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
L Y + E GL L+SRKNLC+H SV R +VD C
Sbjct: 61 LMKYRAEQLGYEEEFRGLGLTSRKNLCLHP--------SVKREKSGAIVDARC 105
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 62/99 (62%), Gaps = 8/99 (8%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYGIM+ AD+RF + KRS+LPKWI + L ++ NLST+ AV ++R+LR MAQ
Sbjct: 638 VLRGKDDYGIMVLADRRFQK--KRSQLPKWINQGLQESDVNLSTDMAVSSARRFLRTMAQ 695
Query: 909 PFTREDMLGVALLSLDQLLEK------EHARAEEEEVPR 941
PF +D G++ L+E E + EEE R
Sbjct: 696 PFRAKDQEGISTWGYKDLMEHKEKMDLERIKELEEEAQR 734
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 51/70 (72%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W GI+D + K KL+
Sbjct: 479 FQVRNEPSVVRNYGNLLTEFAKITPDGMVVFFPSYLYMESIISMWQGMGILDEVWKYKLI 538
Query: 644 FIETQDALDS 653
+ET DA ++
Sbjct: 539 LVETPDAQET 548
>gi|213402977|ref|XP_002172261.1| DNA repair helicase RAD3 [Schizosaccharomyces japonicus yFS275]
gi|212000308|gb|EEB05968.1| DNA repair helicase RAD3 [Schizosaccharomyces japonicus yFS275]
Length = 773
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/418 (47%), Positives = 283/418 (67%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E++G +VD RC +LT+ V+++ AG ++ +CDF+E + + A + GV+++ L
Sbjct: 120 VRREKNGNVVDARCRALTAGFVKEKKLAGMDVELCDFHENLEDLEPHALVPEGVWTLDDL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
E G++ CPYF AR+ + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNID
Sbjct: 180 TEYGQKTTRCPYFSARRMLPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA I LE + E+K+ D+ KL++EY +LV+GLR+A A +
Sbjct: 240 NVCIESLSIDLTESSLRKASRGITALERKVAEVKQVDAGKLQDEYRKLVQGLREADEASQ 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
++NPVLP+++L+E VPGNIR AEHF+ FLKRFIEYLKTR++V V+ E+PA+FL
Sbjct: 300 EQQFMSNPVLPEDVLKEAVPGNIRRAEHFIAFLKRFIEYLKTRMKVLYVIAETPASFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+H+K TF IERKPLRFCA
Sbjct: 358 ---------------------QHMKD------------LTF---------IERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ + DF SL I ATLV++Y +GF +I+EP+ + TVPNPVL+F
Sbjct: 376 ERLTSLVRTLELPIVDDFHSLQQIATFATLVATYERGFVLILEPYETENATVPNPVLHFA 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+S+AIKPVFD+F++V+ITSGTLSPL+MYPK+L F+ V+M S+ M+LAR LPMV
Sbjct: 436 CLDASIAIKPVFDKFRSVIITSGTLSPLNMYPKMLQFETVMMESYGMSLARNSFLPMV 493
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 138/197 (70%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E++G +VD RC +LT+ V+++ AG ++ +CDF+E + + A + GV+++
Sbjct: 119 SVRREKNGNVVDARCRALTAGFVKEKKLAGMDVELCDFHENLEDLEPHALVPEGVWTLDD 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L E G++ CPYF AR+ + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNI
Sbjct: 179 LTEYGQKTTRCPYFSARRMLPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA I LE + E+K+ D+ KL++EY +LV+GLR+A A
Sbjct: 239 DNVCIESLSIDLTESSLRKASRGITALERKVAEVKQVDAGKLQDEYRKLVQGLREADEAS 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ ++NPVLP+++L+
Sbjct: 299 QEQQFMSNPVLPEDVLK 315
Score = 133 bits (335), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 88/142 (61%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQY YM +LKK+LD G LLEMPSGTGKT SLLSLI++Y
Sbjct: 1 MKFYIDDLPVIFPYPRIYPEQYQYMCDLKKSLDVGGVALLEMPSGTGKTISLLSLIISYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRT+ EI+K + EL RL Y K GL L+SRKNLC+H
Sbjct: 61 QFYP-EQRKLIYCSRTMSEIDKALAELKRLMAYREKELGRREPFLGLGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 -------SVRREKNGNVVDARC 133
Score = 105 bits (263), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 79/119 (66%), Gaps = 8/119 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GK D GIM+ ADKR+ RSDKRSKL
Sbjct: 634 ARL-EFLRDTYQIRENDFLTFDAMRHAAQCLGRVLRGKDDSGIMVLADKRYGRSDKRSKL 692
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARA 934
PKWIQ+Y ++ NLST+ AV L+K++LR MAQPF+ ED G++ ++++L K H ++
Sbjct: 693 PKWIQQYTSEGAANLSTDMAVALAKKFLRTMAQPFSLEDQEGISWWTVEEL--KAHQKS 749
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D S++RNYG +L++ + PDG+V FF SYLYLES+V+SW GI+D + K
Sbjct: 503 ISSKFEARNDPSIVRNYGNILIEFSKTTPDGLVAFFPSYLYLESIVSSWQSMGILDEVWK 562
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E +
Sbjct: 563 YKLILVETPDAQETTLALETYRAACCNGRGAVLLSVA---RGKVSEGV 607
>gi|302901601|ref|XP_003048472.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256729405|gb|EEU42759.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 761
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/418 (47%), Positives = 273/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ GEN+ VC +++ D + + GV+S +
Sbjct: 92 VKREKSGSVVDARCRSLTAGFVKEKKDRGENVDVCVYHDNLDLLEPHNLIPNGVWSFDDI 151
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF AR+ + + +V++SYHYLLDPKIA VSK+ ++ +VVFDEAHNID
Sbjct: 152 IRYGEEHKQCPYFTARRMMQYCNVVIFSYHYLLDPKIAERVSKDFSKDCIVVFDEAHNID 211
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I ++ KA Q LE + +M++ D +L+ EY +LV+GLRDA+ AR+
Sbjct: 212 NVCIESLSTDITEDSLRKATRGAQNLENRIAQMRDTDQEQLQNEYQKLVQGLRDAEEARQ 271
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANP LP ++LQE VPGNIR AEHFV FLKRFIEYLKTR++V+QV+ E+P +FL
Sbjct: 272 EDAFMANPALPADLLQEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVRQVISETPPSFLA- 330
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPLRFCA
Sbjct: 331 ----------------------HLKEH------------TF---------IEKKPLRFCA 347
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLVS+Y KGF +I+EP+ VPNP+L+F
Sbjct: 348 ERLTSLVRTLELTNIEDYQPLQEVATFATLVSTYEKGFLLILEPYESDTAEVPNPILHFT 407
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AI+PVF+RF +V+ITSGT+SPL++YPK+L+F VI S+SMTLAR LPM+
Sbjct: 408 CLDAAIAIRPVFERFYSVIITSGTISPLEIYPKMLDFSTVIQESYSMTLARRSFLPMI 465
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 130/197 (65%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ GEN+ VC +++ D + + GV+S
Sbjct: 91 SVKREKSGSVVDARCRSLTAGFVKEKKDRGENVDVCVYHDNLDLLEPHNLIPNGVWSFDD 150
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ G E CPYF AR+ + + +V++SYHYLLDPKIA VSK+ ++ +VVFDEAHNI
Sbjct: 151 IIRYGEEHKQCPYFTARRMMQYCNVVIFSYHYLLDPKIAERVSKDFSKDCIVVFDEAHNI 210
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I ++ KA Q LE + +M++ D +L+ EY +LV+GLRDA+ AR
Sbjct: 211 DNVCIESLSTDITEDSLRKATRGAQNLENRIAQMRDTDQEQLQNEYQKLVQGLRDAEEAR 270
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANP LP ++LQ
Sbjct: 271 QEDAFMANPALPADLLQ 287
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 68/113 (60%), Gaps = 10/113 (8%)
Query: 453 KALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512
+ LDA GHC+LEMPSGTGKT SLLSLIVAY P + KL+YCSRT+ EIEK + EL
Sbjct: 2 QTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQQYMP-EKRKLIYCSRTMSEIEKALVELKS 60
Query: 513 LFDYYIKH-NEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
L Y + E GL L+SRKNLC+H SV R +VD C
Sbjct: 61 LMKYRAEELGYEEEFRGLGLTSRKNLCLHP--------SVKREKSGSVVDARC 105
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 51/70 (72%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W GI+D + K KL+
Sbjct: 479 FQVRNEPSVVRNYGNLLTEFAKITPDGMVVFFPSYLYMESIISMWQGMGILDEVWKYKLI 538
Query: 644 FIETQDALDS 653
+ET DA ++
Sbjct: 539 LVETPDAQET 548
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYGIM+ AD+RF + KR++LPKWI + L + NLST+ AV ++R+LR MAQ
Sbjct: 638 VLRGKDDYGIMVLADRRFQK--KRTQLPKWINQGLQEADVNLSTDMAVSSARRFLRTMAQ 695
Query: 909 PFTREDMLGVALLSLDQLLE 928
PF +D G++ L+E
Sbjct: 696 PFRAKDQEGISTWGYKDLME 715
>gi|261200873|ref|XP_002626837.1| DNA repair helicase RAD3 [Ajellomyces dermatitidis SLH14081]
gi|239593909|gb|EEQ76490.1| DNA repair helicase RAD3 [Ajellomyces dermatitidis SLH14081]
Length = 773
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/418 (47%), Positives = 276/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++ +
Sbjct: 96 VKREKSGAVVDARCRSLTAGFVKEKKERGEDVELCIYHENLDLLEPSNLVPPGVFTLDDI 155
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF R+ + +++YSYHYLLDPKIA VS+EL++ S+VVFDEAHNID
Sbjct: 156 IKYGEQHKQCPYFSIRRMMPFCNVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNID 215
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA LE ++EMK +D+ KL+ EY +LVEGLR A AR+
Sbjct: 216 NVCIESLSIDLTEDSLRKASRGATNLERKIEEMKSSDAEKLQNEYQKLVEGLRGADEARQ 275
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ ++ANP LPD++L+E VPGNIR AEHFV FLKRFIEYLKTR+++ + E+P +FL
Sbjct: 276 EEQLMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKITHTISETPLSFL-- 333
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
LKD++ IERKPLRFCA
Sbjct: 334 ---------------------------------------AHLKDLT---FIERKPLRFCA 351
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERLASL+RTLE+ NL D+ L + ATL ++Y KGF +I+EPF + TVPNP+L+F
Sbjct: 352 ERLASLVRTLELMNLEDYQPLQQVAAFATLAATYEKGFLLILEPFESETATVPNPILHFT 411
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V++TSGTLSPL+MYPK+L F V+ S++MTLAR LPMV
Sbjct: 412 CLDAAIAIKPVFDRFSSVIVTSGTLSPLEMYPKMLKFTTVLQESYTMTLARRSFLPMV 469
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 136/197 (69%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++
Sbjct: 95 SVKREKSGAVVDARCRSLTAGFVKEKKERGEDVELCIYHENLDLLEPSNLVPPGVFTLDD 154
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ + G + CPYF R+ + +++YSYHYLLDPKIA VS+EL++ S+VVFDEAHNI
Sbjct: 155 IIKYGEQHKQCPYFSIRRMMPFCNVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNI 214
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA LE ++EMK +D+ KL+ EY +LVEGLR A AR
Sbjct: 215 DNVCIESLSIDLTEDSLRKASRGATNLERKIEEMKSSDAEKLQNEYQKLVEGLRGADEAR 274
Query: 835 ETDVVLANPVLPDEILQ 851
+ + ++ANP LPD++L+
Sbjct: 275 QEEQLMANPALPDDLLK 291
Score = 106 bits (264), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 72/118 (61%), Gaps = 10/118 (8%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M +LKK LDA GHC+LEMPSGTGKT SLLSLI+AY P + KL+YCSRT+ EIEK +
Sbjct: 1 MCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIIAYQQHRP-EQRKLIYCSRTMSEIEKAL 59
Query: 508 EELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
EL L Y + + GL L+SRKNLC+H SV R +VD C
Sbjct: 60 AELKALMKYRTRQLGYAEDFRGLGLTSRKNLCLHP--------SVKREKSGAVVDARC 109
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 75/123 (60%), Gaps = 10/123 (8%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +++GK DYG+M+ AD+RF + +RS+L
Sbjct: 610 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVIRGKDDYGVMVLADRRFQK--RRSQL 666
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + ++ TNLST+ AV +K +LR MAQPF D G++ SL L + H + +
Sbjct: 667 PKWISQAMLESETNLSTDMAVATAKSFLRTMAQPFKSRDQEGISTWSLADL--ELHVKKQ 724
Query: 936 EEE 938
+EE
Sbjct: 725 KEE 727
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 52/74 (70%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG LL++ + + PDG+V FF SYLY+ES+++ W GI+D +
Sbjct: 479 ISSSFQIRNDPGVVRNYGNLLLEFSRITPDGIVVFFPSYLYMESIISMWQGMGILDLVWN 538
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ +S
Sbjct: 539 YKLILVETPDSQES 552
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISV---IRN 595
I S F+ R+D V+RNYG LL++ + + PDG+V FF SYLY+ES+ + + + N
Sbjct: 479 ISSSFQIRNDPGVVRNYGNLLLEFSRITPDGIVVFFPSYLYMESIISMWQGMGILDLVWN 538
Query: 596 YGQLLVD 602
Y +LV+
Sbjct: 539 YKLILVE 545
>gi|328770825|gb|EGF80866.1| hypothetical protein BATDEDRAFT_29908 [Batrachochytrium
dendrobatidis JAM81]
Length = 758
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/418 (48%), Positives = 278/418 (66%), Gaps = 48/418 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKE+ G + D +C +LTS VR+ K +I +C+FYE +A A + GVY++ L
Sbjct: 119 VSKEKRGTVTDAKCRNLTSPWVRENAKHEPDIELCEFYETLEAADTTATVPSGVYTLEDL 178
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE + CPYFLAR+ + A +++YSYHYLLDPK+A++VSKEL+R +VVFDEAHNID
Sbjct: 179 KEYSTKKKYCPYFLARRLLPFANVIIYSYHYLLDPKVADMVSKELSRDCIVVFDEAHNID 238
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC +SLS+ I++ ++ + ++ L ++ MK ++S KL+ EY R LR AQ +R+
Sbjct: 239 NVCTESLSIDISKPMLDASARSVAELSRRIESMKVSNSEKLQNEYTR----LRQAQESRD 294
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
++ NPVLPD+ILQE VPGNIR AEHFV FL+RFIEYLKTR+RV VV ESP +FL
Sbjct: 295 AGEIMTNPVLPDDILQESVPGNIRRAEHFVAFLRRFIEYLKTRMRVMHVVAESPLSFL-- 352
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+H+K TF I++KPLRF A
Sbjct: 353 ---------------------QHVKE------------ITF---------IDKKPLRFSA 370
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL++TLEI +LTD+S+L + ATLV++Y KGF +I+EPF + T+PNPVL+F
Sbjct: 371 ERLGSLIKTLEINDLTDYSALQKVASFATLVATYQKGFVLILEPFENDMDTIPNPVLHFT 430
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD++LAIKPVFDRF +V+ITSGTLSP+++YP +L F+PV+ S+ MTL R C LP++
Sbjct: 431 CLDATLAIKPVFDRFSSVIITSGTLSPMELYPMLLGFEPVVTESYQMTLTRTCFLPLI 488
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/227 (43%), Positives = 145/227 (63%), Gaps = 16/227 (7%)
Query: 630 DQGIIDN-----LQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAG 684
+QG+++N L R+ L I VSKE+ G + D +C +LTS VR+ K
Sbjct: 95 EQGLVENFLGLGLTSRRNLCIHP-------IVSKEKRGTVTDAKCRNLTSPWVRENAKHE 147
Query: 685 ENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 744
+I +C+FYE +A A + GVY++ LKE + CPYFLAR+ + A +++YSY
Sbjct: 148 PDIELCEFYETLEAADTTATVPSGVYTLEDLKEYSTKKKYCPYFLARRLLPFANVIIYSY 207
Query: 745 HYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGT 804
HYLLDPK+A++VSKEL+R +VVFDEAHNIDNVC +SLS+ I++ ++ + ++ L
Sbjct: 208 HYLLDPKVADMVSKELSRDCIVVFDEAHNIDNVCTESLSIDISKPMLDASARSVAELSRR 267
Query: 805 LKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
++ MK ++S KL+ EY R LR AQ +R+ ++ NPVLPD+ILQ
Sbjct: 268 IESMKVSNSEKLQNEYTR----LRQAQESRDAGEIMTNPVLPDDILQ 310
Score = 162 bits (410), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 77/117 (65%), Positives = 91/117 (77%), Gaps = 1/117 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M +DDLP+ FPYEYIYPEQYAYM ++K+ALDA+GHCLLEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFTLDDLPIIFPYEYIYPEQYAYMKDMKRALDAQGHCLLEMPSGTGKTISLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIH 540
+P + KL+YCSRTVPEIEK + EL+RL Y + N GL L+SR+NLCIH
Sbjct: 61 QFYP-EKRKLIYCSRTVPEIEKALAELSRLMKYREEQGLVENFLGLGLTSRRNLCIH 116
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 83/132 (62%), Gaps = 6/132 (4%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ + C +P +V + + + S FE R+D++V+RNYG +L++ A + PDG+VCFF
Sbjct: 476 QMTLTRTCFLP-LIVTRGSDQVTVSSKFEVRNDVAVVRNYGNILLEFAKITPDGLVCFFP 534
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSS 675
SYLY+ES+VA+W D G++ L K KL+FIET DA ++ S++ E + D GR L S
Sbjct: 535 SYLYMESIVAAWNDLGMLRELLKLKLIFIETPDATET-SIALENYRQACDNGRGAVLLSV 593
Query: 676 SVRDRHKAGENI 687
+ R K E +
Sbjct: 594 A---RGKVSEGV 602
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 109/216 (50%), Gaps = 19/216 (8%)
Query: 726 PYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVR 785
P +L ++I+ A + LL K+ + + + +S+ + + DN ++ +
Sbjct: 534 PSYLYMESIVAAWNDLGMLRELLKLKLIFIETPDATETSIALENYRQACDN-GRGAVLLS 592
Query: 786 INRRTIEKAV------GNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVV 839
+ R + + V G L G + E+ K R EY LRD RE D +
Sbjct: 593 VARGKVSEGVDFDHNYGRAVILFGIPYQYTESRILKARLEY------LRDNSRIRENDFL 646
Query: 840 LANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEE 894
+ + +L+GKTDYG+M+FADKRF R DKRSKLPKWI +T+ NLST+
Sbjct: 647 TFDAMRHGAQCVGRVLRGKTDYGLMVFADKRFGRMDKRSKLPKWILSGMTEAGMNLSTDM 706
Query: 895 AVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKE 930
AV ++K++LR MAQP M GV+L ++ +E
Sbjct: 707 AVSMAKKFLRTMAQPLEGNSM-GVSLWDAKEVTRRE 741
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 49/71 (69%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRD 588
+V + + S+FE R+D++V+RNYG +L++ A + PDG+VCFF SYLY+ES+ +
Sbjct: 488 IVTRGSDQVTVSSKFEVRNDVAVVRNYGNILLEFAKITPDGLVCFFPSYLYMESIVAAWN 547
Query: 589 DISVIRNYGQL 599
D+ ++R +L
Sbjct: 548 DLGMLRELLKL 558
>gi|295671522|ref|XP_002796308.1| DNA repair helicase RAD3 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284441|gb|EEH40007.1| DNA repair helicase RAD3 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 797
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/418 (47%), Positives = 273/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G IVD RC S+T+ V+++ + GE++ +C ++E D + + PGV+++ +
Sbjct: 120 VKREKSGTIVDARCRSMTAGFVKEKKERGEDVELCIYHENLDLLEPSNLVPPGVFTLDDM 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF R+ + +++YSYHYLLDPKIA VS+EL++ S+VVFDEAHNID
Sbjct: 180 LKYGEQHKQCPYFSVRRMMPFCNVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA LE + EMK D+ KL+ EY +LVEGLR+A AR+
Sbjct: 240 NVCIESLSIDLTEDSLRKASRGANNLERRIDEMKSLDAEKLQNEYQKLVEGLREADEARQ 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ ++ANP LPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V + E+P +FL
Sbjct: 300 EEQLMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPPSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
LKD++ IERKPLRFCA
Sbjct: 358 ---------------------------------------AHLKDLT---FIERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ NL D+ L + ATL ++Y KGF +I+EPF TVPNP+L+F
Sbjct: 376 ERLTSLVRTLELMNLEDYQPLQQVAAFATLAATYEKGFLLILEPFESDTATVPNPILHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGTLSPL+MYPK+L F V+ S+SMTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFTTVLQESYSMTLARRSFLPMI 493
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 135/197 (68%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G IVD RC S+T+ V+++ + GE++ +C ++E D + + PGV+++
Sbjct: 119 SVKREKSGTIVDARCRSMTAGFVKEKKERGEDVELCIYHENLDLLEPSNLVPPGVFTLDD 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ + G + CPYF R+ + +++YSYHYLLDPKIA VS+EL++ S+VVFDEAHNI
Sbjct: 179 MLKYGEQHKQCPYFSVRRMMPFCNVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA LE + EMK D+ KL+ EY +LVEGLR+A AR
Sbjct: 239 DNVCIESLSIDLTEDSLRKASRGANNLERRIDEMKSLDAEKLQNEYQKLVEGLREADEAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ + ++ANP LPD++L+
Sbjct: 299 QEEQLMANPALPDDLLK 315
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/142 (54%), Positives = 90/142 (63%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT SLLSLI+AY
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIIAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
P + KL+YCSRT+ EIEK + EL L Y + + GL L+SRKNLC+H
Sbjct: 61 QHKP-EQRKLIYCSRTMSEIEKALAELKALMKYRAQQLGYTEDFRGLGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 -------SVKREKSGTIVDARC 133
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG LL++ + + PDG+V FF SYLY+ES+++ W GI+D++
Sbjct: 503 ISSSFQIRNDPGVVRNYGNLLLEFSRITPDGIVVFFPSYLYMESIISMWQGMGILDSIWN 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ +S
Sbjct: 563 YKLILVETPDSQES 576
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 76/126 (60%), Gaps = 9/126 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR++L
Sbjct: 634 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFQK--KRAQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + ++ TNLST+ A+ +K +LR MAQPF +D G++ S+ LE+ +
Sbjct: 691 PKWISQAMLESETNLSTDMAMATAKSFLRTMAQPFKSKDQEGISTWSIAD-LERYVKKQR 749
Query: 936 EEEVPR 941
EEE R
Sbjct: 750 EEESKR 755
>gi|380492131|emb|CCF34825.1| DNA repair helicase rad15 [Colletotrichum higginsianum]
Length = 775
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/418 (47%), Positives = 269/418 (64%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G IVD RC SLT+ V+++ GEN+ VC +++ D + + GV++ L
Sbjct: 103 VKQEKSGAIVDARCRSLTAGFVKEKKDRGENVDVCVYHDNLDLLEPHNLIPNGVWTFDGL 162
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF AR+ + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNID
Sbjct: 163 LKYGEQHKQCPYFTARRMMQFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 222
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I ++ KA Q LE + EM++ D +L+ EY +LVEGLR A AR+
Sbjct: 223 NVCIESLSTDITEDSLRKATRGAQNLERKIAEMRDTDQEQLQNEYQKLVEGLRGADEARQ 282
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D ++NP LPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V+ + E+P
Sbjct: 283 EDAFMSNPALPDDLLKEAVPGNIRRAEHFVSFLKRFIEYLKTRMKVRHTISETP------ 336
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
PS ++ Y F IE+KPLRFCA
Sbjct: 337 ------PSFLAHLREYTF--------------------------------IEKKPLRFCA 358
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EPF + VPNPVL+F
Sbjct: 359 ERLTSLVRTLELTNIEDYQPLQEVATFATLVATYEKGFLLILEPFESETAEVPNPVLHFT 418
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGT+SPL+MYPK+L F V+ S+SMTLAR LPM+
Sbjct: 419 CLDAAIAIKPVFDRFSSVIITSGTMSPLEMYPKMLGFSTVVQESYSMTLARRSFLPMI 476
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 130/197 (65%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G IVD RC SLT+ V+++ GEN+ VC +++ D + + GV++
Sbjct: 102 SVKQEKSGAIVDARCRSLTAGFVKEKKDRGENVDVCVYHDNLDLLEPHNLIPNGVWTFDG 161
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L + G + CPYF AR+ + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNI
Sbjct: 162 LLKYGEQHKQCPYFTARRMMQFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNI 221
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I ++ KA Q LE + EM++ D +L+ EY +LVEGLR A AR
Sbjct: 222 DNVCIESLSTDITEDSLRKATRGAQNLERKIAEMRDTDQEQLQNEYQKLVEGLRGADEAR 281
Query: 835 ETDVVLANPVLPDEILQ 851
+ D ++NP LPD++L+
Sbjct: 282 QEDAFMSNPALPDDLLK 298
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/95 (61%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
Query: 447 YMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKV 506
YM +LKK LDA GHC+LEMPSGTGKT SLLSLIVAY +P + KL+YCSRT+ EIEK
Sbjct: 7 YMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQQHNP-EHRKLIYCSRTMSEIEKA 65
Query: 507 VEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIH 540
+ EL L Y + EE GL L+SRKNLC+H
Sbjct: 66 LAELKALMKYRAQELGEEEEFRGLGLTSRKNLCLH 100
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 8/112 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYGIM+ AD+RF + KR++L
Sbjct: 617 ARL-EFLRETYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFQK--KRAQL 673
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLL 927
PKWI + L D TN+ST+ AV ++R+L+QMAQPF +D GV+ S + L+
Sbjct: 674 PKWINQGLLDADTNVSTDMAVSSARRFLKQMAQPFRAKDQEGVSTWSYEDLM 725
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 52/74 (70%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ + F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W I++ + K
Sbjct: 486 ISTSFQVRNEPSVVRNYGTLLTEFAKITPDGMVVFFPSYLYMESIISMWQGMNILEEVWK 545
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 546 YKLILVETPDAQET 559
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVI 593
I + F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+ ++++
Sbjct: 486 ISTSFQVRNEPSVVRNYGTLLTEFAKITPDGMVVFFPSYLYMESIISMWQGMNIL 540
>gi|449299736|gb|EMC95749.1| hypothetical protein BAUCODRAFT_502978 [Baudoinia compniacensis
UAMH 10762]
Length = 803
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/418 (46%), Positives = 275/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C +++ D + + PGV+++ +
Sbjct: 120 VKREKSGSVVDARCRSLTAGFVKEKKERGEDVDLCIYHDNLDLLEPHNLIPPGVWTLDGM 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G + CPYF AR+ + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNID
Sbjct: 180 LRYGEQHKQCPYFTARRMMPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ +A Q LE +K+MKE D+ KL+ EYA+LVEGLR+A ARE
Sbjct: 240 NVCIESLSIDLTEESLRRAGRGAQNLEDKIKQMKETDAEKLQNEYAKLVEGLREADQARE 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ ++NP LPD++L+E +PGNIR AEHF FLKRFIEYLKTR++V V+ E+P +FL
Sbjct: 300 EEAFMSNPALPDDLLKEAIPGNIRRAEHFTAFLKRFIEYLKTRMKVLHVISETPPSFLA- 358
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPLRFCA
Sbjct: 359 ----------------------HLKE------------LTF---------IEKKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y GF +I+EP+ TVPNP L+F
Sbjct: 376 ERLTSLVRTLELTNIEDYQPLQEVASFATLVATYETGFLLILEPYESDTATVPNPELHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGT+SPL+MYPK+L F V+ S++MTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLGFSTVVQESYAMTLARRSFLPMI 493
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 137/197 (69%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C +++ D + + PGV+++
Sbjct: 119 SVKREKSGSVVDARCRSLTAGFVKEKKERGEDVDLCIYHDNLDLLEPHNLIPPGVWTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ G + CPYF AR+ + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNI
Sbjct: 179 MLRYGEQHKQCPYFTARRMMPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ +A Q LE +K+MKE D+ KL+ EYA+LVEGLR+A AR
Sbjct: 239 DNVCIESLSIDLTEESLRRAGRGAQNLEDKIKQMKETDAEKLQNEYAKLVEGLREADQAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
E + ++NP LPD++L+
Sbjct: 299 EEEAFMSNPALPDDLLK 315
Score = 148 bits (373), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/130 (58%), Positives = 90/130 (69%), Gaps = 2/130 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M MIDDLPV FPY IYPEQYAYM +LK+ LDA GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MRFMIDDLPVLFPYPRIYPEQYAYMSDLKRTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRT+ EIEK + EL L Y E+ + GL L+SRKNLC+H
Sbjct: 61 QFYP-EHRKLIYCSRTMSEIEKALAELKALMKYRADQLGEVEDFRGLGLTSRKNLCLHPS 119
Query: 543 FETRDDISVI 552
+ SV+
Sbjct: 120 VKREKSGSVV 129
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 55/74 (74%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ + F+TRDD V+RNYG LL++ + + PDG+V FF SYLY+E V++SW GI+D++ K
Sbjct: 503 MSTGFQTRDDPQVVRNYGNLLIEFSKLTPDGIVVFFPSYLYMERVISSWQSMGILDSVWK 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ ++
Sbjct: 563 SKLILVETPDSQET 576
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 74/126 (58%), Gaps = 10/126 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYGIM+ ADKRFA+ KR++L
Sbjct: 634 ARL-EFLRETYRIRENDFLSFDAMRHCAQCLGRVLRGKDDYGIMVMADKRFAK--KRTQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI L ++ + +S ++AV +K++L+ M++PF GV+ S + L+ EH R
Sbjct: 691 PKWISSALLESDSQMSVDQAVASAKKFLKVMSKPFPARLQEGVSTWSYEDLM--EHKRKM 748
Query: 936 EEEVPR 941
E E R
Sbjct: 749 ESEKER 754
>gi|121701205|ref|XP_001268867.1| TFIIH complex helicase Rad3, putative [Aspergillus clavatus NRRL 1]
gi|119397010|gb|EAW07441.1| TFIIH complex helicase Rad3, putative [Aspergillus clavatus NRRL 1]
Length = 771
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/418 (48%), Positives = 283/418 (67%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++ L
Sbjct: 96 VKREKSGAVVDARCRSLTAGFVKEKKERGEDVELCIYHENLDLLEPHNLVPPGVFTLDGL 155
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G E CPYF AR+ + + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNID
Sbjct: 156 LKYGEEHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 215
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+++LS+ I ++ KA LE ++EMK +D+ KL+ EY++LVEGLR+A+ ARE
Sbjct: 216 NVCIEALSIDITEDSLRKATKGANNLERKIQEMKSSDAEKLQNEYSKLVEGLREAEQARE 275
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ +ANPVLPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V + E+P +FL
Sbjct: 276 EEQFIANPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPPSFL-- 333
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
T +KD++ IERKPLRFCA
Sbjct: 334 ---------------------------------------THVKDLT---FIERKPLRFCA 351
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ D+ L + ATLV++Y KGF +I+EPF +A TVPNP+L+F
Sbjct: 352 ERLTSLVRTLELINIEDYQPLQEVATFATLVATYEKGFLLILEPFESEAATVPNPILHFT 411
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+S+AIKPVFDRF +V+ITSGTLSPL+MYPK+L+F V+ S+SMTLAR LPM+
Sbjct: 412 CLDASIAIKPVFDRFSSVIITSGTLSPLEMYPKMLDFDTVLQESYSMTLARRSFLPMI 469
Score = 189 bits (480), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 140/197 (71%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++
Sbjct: 95 SVKREKSGAVVDARCRSLTAGFVKEKKERGEDVELCIYHENLDLLEPHNLVPPGVFTLDG 154
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L + G E CPYF AR+ + + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNI
Sbjct: 155 LLKYGEEHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNI 214
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC+++LS+ I ++ KA LE ++EMK +D+ KL+ EY++LVEGLR+A+ AR
Sbjct: 215 DNVCIEALSIDITEDSLRKATKGANNLERKIQEMKSSDAEKLQNEYSKLVEGLREAEQAR 274
Query: 835 ETDVVLANPVLPDEILQ 851
E + +ANPVLPD++L+
Sbjct: 275 EEEQFIANPVLPDDLLK 291
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 75/120 (62%), Gaps = 14/120 (11%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M +LKK LDA+G+C+LEMPSGTGKT +LLSLIVAY +P + KL+YCSRT+ EIEK +
Sbjct: 1 MCDLKKTLDAQGNCVLEMPSGTGKTVTLLSLIVAYQQHYP-EHRKLIYCSRTMSEIEKAL 59
Query: 508 EELARLFDY---YIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
EL L Y + + E+ G L+SRKNLC+H SV R +VD C
Sbjct: 60 AELKELMKYRTQQLGYTEDFRALG--LTSRKNLCLHP--------SVKREKSGAVVDARC 109
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 69/111 (62%), Gaps = 8/111 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR++L
Sbjct: 610 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFQK--KRNQL 666
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
PKWI + + ++ TNLST+ AV +K +LR MAQPF +D G++ SL L
Sbjct: 667 PKWISQAMLESETNLSTDMAVATAKNFLRTMAQPFKAKDQEGISTWSLADL 717
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG L+++ + + PDG+V FF SYLY+ES+V+ W GI+D++
Sbjct: 479 ISSSFQIRNDPGVVRNYGNLVLEFSRITPDGIVVFFPSYLYMESIVSMWQGMGILDSIWN 538
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA +S
Sbjct: 539 YKLILVETPDAQES 552
>gi|396473579|ref|XP_003839371.1| similar to TFIIH basal transcription factor complex helicase
subunit [Leptosphaeria maculans JN3]
gi|312215940|emb|CBX95892.1| similar to TFIIH basal transcription factor complex helicase
subunit [Leptosphaeria maculans JN3]
Length = 792
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/418 (46%), Positives = 273/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G IVD RC SLT+ V+++ + GE++ +C +++ D + + PGV++ +
Sbjct: 120 VKREKSGSIVDARCRSLTAGFVKEKKERGEDVELCVYHDNLDLLEPHNLIPPGVWTFDGM 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF AR+ + + +++YSYHYLLDPKIA+ VSKEL++ +VVFDEAHNID
Sbjct: 180 LKYGEQQKQCPYFTARRMMPYCNVIIYSYHYLLDPKIADRVSKELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + + KA + L+ + EMK D+ KL+ EYA+LV+GLR A AR
Sbjct: 240 NVCIESLSIDLTEDVLRKATKGVNNLDRKITEMKSTDAEKLQNEYAKLVDGLRSADEARS 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ +ANPVLPD++L E VPGNIR AEHFV FLKRFIEYLKTR++V VV ++P FL
Sbjct: 300 EEAFMANPVLPDDLLTEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLNVVSDTPPAFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ L+D++ IERKPLRFCA
Sbjct: 358 ---------------------------------------SHLRDLTY---IERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+T++ D+ L + ATLV++Y GF II+EPF TVPNP+L+
Sbjct: 376 ERLTSLVRTLELTSIEDYQPLQEVATFATLVATYETGFLIIIEPFESATATVPNPILHLT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVF+RF +V++TSGT+SPLDMYP++LNF V+ SF+MTL R LPM+
Sbjct: 436 CLDAAIAIKPVFERFYSVIVTSGTMSPLDMYPRMLNFNTVVQESFTMTLTRKSFLPMI 493
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 88/196 (44%), Positives = 134/196 (68%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G IVD RC SLT+ V+++ + GE++ +C +++ D + + PGV++
Sbjct: 119 SVKREKSGSIVDARCRSLTAGFVKEKKERGEDVELCVYHDNLDLLEPHNLIPPGVWTFDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ + G + CPYF AR+ + + +++YSYHYLLDPKIA+ VSKEL++ +VVFDEAHNI
Sbjct: 179 MLKYGEQQKQCPYFTARRMMPYCNVIIYSYHYLLDPKIADRVSKELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + + KA + L+ + EMK D+ KL+ EYA+LV+GLR A AR
Sbjct: 239 DNVCIESLSIDLTEDVLRKATKGVNNLDRKITEMKSTDAEKLQNEYAKLVDGLRSADEAR 298
Query: 835 ETDVVLANPVLPDEIL 850
+ +ANPVLPD++L
Sbjct: 299 SEEAFMANPVLPDDLL 314
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/142 (53%), Positives = 89/142 (62%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID LPV FPY +YPEQYAYM +LK+ LD GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFFIDTLPVLFPYPRVYPEQYAYMCDLKRTLDQGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRT+ EIEK + EL L Y + E GL L+SRKNLC+H
Sbjct: 61 QHYP-EKRKLIYCSRTMSEIEKALAELKALMKYRTQELGYEEEFRGLGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 -------SVKREKSGSIVDARC 133
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 52/74 (70%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D+ V RN+G LL++ + PDGVV FF SYLY+ES++++W I+D + K
Sbjct: 503 ITSQFEHRNDLQVQRNFGNLLIEFCKLTPDGVVVFFPSYLYMESIISAWQGMEILDTVWK 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 563 YKLILVETPDAQET 576
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++GK DYGIM+ ADKRF + K+S+LPKWIQ L T LS ++AV +K +LR M+
Sbjct: 666 VIRGKDDYGIMVLADKRFNK--KQSQLPKWIQHGLDAKSTKLSIDQAVSTAKAFLRDMSV 723
Query: 909 PFTREDMLGVALLSLDQL 926
P++R + G + SL+ L
Sbjct: 724 PWSRAEQEGHSSWSLEDL 741
>gi|402078170|gb|EJT73519.1| DNA repair helicase rad15 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 791
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/418 (47%), Positives = 273/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ ++++ GE++ VC +++ D + + GV++ L
Sbjct: 120 VKREKSGAVVDARCRSLTAGFIKEKKDKGEDVDVCVYHDNLDLLEPHNLIPNGVWTFDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G + CPYF AR+ + + +++YSYHYLLDPKIA VSKEL+R S++VFDEAHNID
Sbjct: 180 LRYGEQHKQCPYFTARRMMQYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS + ++ KA Q LE +K+M+E D +L +EY +LV GLRDA AR+
Sbjct: 240 NVCIESLSTDLTEDSLRKATRGAQNLENRIKQMRETDQKQLEDEYQKLVAGLRDADEARQ 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANPVLPD++++E VPGNIR AEHFV FLKRFIEYLKTRL+V +V+ E+P +FL
Sbjct: 300 EDAFMANPVLPDDLIREAVPGNIRRAEHFVAFLKRFIEYLKTRLKVLEVISETPPSFLA- 358
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPLRFCA
Sbjct: 359 ----------------------HLKE------------YTF---------IEKKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ DF L + ATLV++Y KGF +++EP+ V NPVL+F
Sbjct: 376 ERLTSLVRTLELTNIEDFQPLQEVATFATLVATYEKGFLLLLEPYETVKSKVVNPVLHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVF+RF+TV+ITSGTLSPL+MYPK+L F ++ S+SMTL R LPM+
Sbjct: 436 CLDAAIAIKPVFERFKTVIITSGTLSPLEMYPKMLGFDAIVQESYSMTLGRRSFLPMI 493
Score = 199 bits (505), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 133/197 (67%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
+V +E+ G +VD RC SLT+ ++++ GE++ VC +++ D + + GV++
Sbjct: 119 AVKREKSGAVVDARCRSLTAGFIKEKKDKGEDVDVCVYHDNLDLLEPHNLIPNGVWTFDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L G + CPYF AR+ + + +++YSYHYLLDPKIA VSKEL+R S++VFDEAHNI
Sbjct: 179 LLRYGEQHKQCPYFTARRMMQYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS + ++ KA Q LE +K+M+E D +L +EY +LV GLRDA AR
Sbjct: 239 DNVCIESLSTDLTEDSLRKATRGAQNLENRIKQMRETDQKQLEDEYQKLVAGLRDADEAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANPVLPD++++
Sbjct: 299 QEDAFMANPVLPDDLIR 315
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/142 (53%), Positives = 93/142 (65%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM +LK+ LDA G+C+LEMPSGTGKT +LLSLIVAY
Sbjct: 1 MLFYIDDLPVIFPYPRIYPEQYAYMCDLKRTLDAGGNCVLEMPSGTGKTATLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRT+ EIEK + EL L Y + +E + GL L+SRKNLC+H
Sbjct: 61 QHNP-EHRKLIYCSRTMSEIEKALAELRALMKYRAEQLGKEEDFRGLGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
+V R +VD C
Sbjct: 119 -------AVKREKSGAVVDARC 133
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 63/88 (71%), Gaps = 4/88 (4%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYGIM+ AD+RF + KRS+LPKWI + L ++ TNLST+ AV ++++L+ MAQ
Sbjct: 666 VLRGKDDYGIMVLADRRFPK--KRSQLPKWINQALLESDTNLSTDMAVSSARKFLKTMAQ 723
Query: 909 PFTREDMLGVALLSLDQLLEKEHARAEE 936
PF +D GV++ +L+ L K H EE
Sbjct: 724 PFRPKDQEGVSMWTLEDL--KRHQAQEE 749
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 49/74 (66%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F R D+ V+RNYG LL + A + PDG+V FF SY Y+ES+++ W I++ + K
Sbjct: 503 ISSSFAVRTDLPVVRNYGNLLTEFAKITPDGMVVFFPSYFYMESIISMWQGMNILEEVWK 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 563 YKLILVETPDAQET 576
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRD 588
+V I S F R D+ V+RNYG LL + A + PDG+V FF SY Y+ES+
Sbjct: 493 IVTKGSDQAAISSSFAVRTDLPVVRNYGNLLTEFAKITPDGMVVFFPSYFYMESIISMWQ 552
Query: 589 DISVI 593
++++
Sbjct: 553 GMNIL 557
>gi|171690222|ref|XP_001910036.1| hypothetical protein [Podospora anserina S mat+]
gi|170945059|emb|CAP71170.1| unnamed protein product [Podospora anserina S mat+]
Length = 802
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/418 (47%), Positives = 274/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ ++++ + GE++ VC +++ D + + GV+S+ L
Sbjct: 120 VKREKSGSVVDARCRSLTAGFIQEKKRKGEDVDVCVYHDNLDNLEPHNLIPNGVWSLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G++ CPYF AR+ + +V+YSYHYLLDPKIA VSK+ ++ +VVFDEAHNID
Sbjct: 180 LRYGQKHTQCPYFTARRMMSQCNVVIYSYHYLLDPKIAERVSKDFSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I ++ +A Q LE + EM+++D KL++EY +LVEGLR RE
Sbjct: 240 NVCIESLSTDITEESLRRATRGAQFLENRINEMRDSDQQKLQDEYEKLVEGLRGDDETRE 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANP LP+++L+E VPGNIR AEHFV FL+RFIEYLKTR++V+QV+ E+P +FL
Sbjct: 300 EDSFMANPTLPEDLLKEAVPGNIRRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLA- 358
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPLRFCA
Sbjct: 359 ----------------------HLKE------------YTF---------IEKKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+T + D+ L + ATLV++Y KGF +I+EP+ VPNPVL+F
Sbjct: 376 ERLTSLVRTLELTRIEDYQPLQEVATFATLVATYEKGFLLILEPYESDTAEVPNPVLHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGT+SPL+MYPK+LNF+ V+ S+SMTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLNFETVVQESYSMTLARRSFLPMI 493
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 130/196 (66%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
V +E+ G +VD RC SLT+ ++++ + GE++ VC +++ D + + GV+S+ L
Sbjct: 120 VKREKSGSVVDARCRSLTAGFIQEKKRKGEDVDVCVYHDNLDNLEPHNLIPNGVWSLDGL 179
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
G++ CPYF AR+ + +V+YSYHYLLDPKIA VSK+ ++ +VVFDEAHNID
Sbjct: 180 LRYGQKHTQCPYFTARRMMSQCNVVIYSYHYLLDPKIAERVSKDFSKDCIVVFDEAHNID 239
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC++SLS I ++ +A Q LE + EM+++D KL++EY +LVEGLR RE
Sbjct: 240 NVCIESLSTDITEESLRRATRGAQFLENRINEMRDSDQQKLQDEYEKLVEGLRGDDETRE 299
Query: 836 TDVVLANPVLPDEILQ 851
D +ANP LP+++L+
Sbjct: 300 EDSFMANPTLPEDLLK 315
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 71/132 (53%), Positives = 88/132 (66%), Gaps = 6/132 (4%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDL V FPY IYPEQYAYMV+LKK LDA G+C+LEMPSGTGKT +LLSLIVAY
Sbjct: 1 MEFFIDDLRVLFPYPRIYPEQYAYMVDLKKTLDAGGNCVLEMPSGTGKTVTLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY---YIKHNEEINMTGLVLSSRKNLCIH 540
+ + L+YCSRT+ EIEK + EL L + + H E+ G L+SRKNLC+H
Sbjct: 61 MSSQ-EKRPLIYCSRTMSEIEKALVELKALMKFRAERLGHEEDFRAMG--LTSRKNLCLH 117
Query: 541 SEFETRDDISVI 552
+ + SV+
Sbjct: 118 PDVKREKSGSVV 129
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 76/126 (60%), Gaps = 10/126 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +++GK DYG+M+ AD+RF K +L
Sbjct: 634 ARL-EFLRETYRIRENDFLSFDAMRHAAQCLGRVIRGKDDYGVMVLADRRF--KSKIQQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + L TNLST+ AV ++R+ + +AQPF ED G+++ +L+QL K+H R
Sbjct: 691 PKWIHQALLGADTNLSTDMAVSNARRFFKMIAQPFRTEDQEGISIWTLEQL--KQHQRKM 748
Query: 936 EEEVPR 941
+EE+ R
Sbjct: 749 QEELIR 754
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 51/70 (72%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
F+ R++ SV+RNYG LLV+ A + PDG+V F SYLYLES+++ W G++D + K KL+
Sbjct: 507 FQVRNEPSVVRNYGSLLVEFAKITPDGIVLFTPSYLYLESLISMWQGMGVLDEVWKYKLI 566
Query: 644 FIETQDALDS 653
+ET DA ++
Sbjct: 567 LVETPDAQET 576
>gi|320593951|gb|EFX06354.1| tfiih complex helicase [Grosmannia clavigera kw1407]
Length = 793
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/418 (47%), Positives = 272/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V ++ + GE++ VC +++ D + + GV+++ L
Sbjct: 120 VKREKSGSVVDARCRSLTAGFVIEKKERGEDVNVCIYHDNLDKLEPHNLIPNGVWTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF +R+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNID
Sbjct: 180 LRYGEEHKQCPYFTSRRMMQFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I ++ KA Q LE + EM+E D +L EY +LV+GLR+A AR+
Sbjct: 240 NVCIESLSTDITEDSLRKATRGAQNLEKKINEMRETDQKQLENEYQKLVQGLREADEARQ 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D + NP LP+++L+E VPGNIR AEHFV FLKRFIEYLKTR++V+QV+ E+P +FL
Sbjct: 300 EDAFMTNPTLPEDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVRQVISETPPSFLA- 358
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPLRFCA
Sbjct: 359 ----------------------HLKE------------YTF---------IEKKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERLASL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EPF VPNPVL+F
Sbjct: 376 ERLASLVRTLELTNIEDYQPLREVATFATLVATYEKGFLLILEPFESDTAEVPNPVLHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVF+RF +V+ITSGT+SPL+MYPK+L F V+ S++MTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFERFSSVIITSGTISPLEMYPKMLGFNTVVQESYTMTLARRSFLPMI 493
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 129/197 (65%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V ++ + GE++ VC +++ D + + GV+++
Sbjct: 119 SVKREKSGSVVDARCRSLTAGFVIEKKERGEDVNVCIYHDNLDKLEPHNLIPNGVWTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L G E CPYF +R+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNI
Sbjct: 179 LLRYGEEHKQCPYFTSRRMMQFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I ++ KA Q LE + EM+E D +L EY +LV+GLR+A AR
Sbjct: 239 DNVCIESLSTDITEDSLRKATRGAQNLEKKINEMRETDQKQLENEYQKLVQGLREADEAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ D + NP LP+++L+
Sbjct: 299 QEDAFMTNPTLPEDLLK 315
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/130 (53%), Positives = 84/130 (64%), Gaps = 2/130 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLP+ FPY IYP +YM +LK+ LDA GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFNIDDLPILFPYPRIYPVSNSYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+P KL+YCSRT+ EIEK + EL L Y + E GL L+SRKNLC+H
Sbjct: 61 QYYP-GQRKLIYCSRTMSEIEKALAELKALMKYRTQELGYEEEFRGLGLTSRKNLCLHPS 119
Query: 543 FETRDDISVI 552
+ SV+
Sbjct: 120 VKREKSGSVV 129
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ + F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 503 MSTSFQVRNEPSVVRNYGTLLTEFAKITPDGLVVFFPSYLYMESIISMWQGMGILDEVWK 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 563 YKLILVETPDAQET 576
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 73/124 (58%), Gaps = 9/124 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYGIM+ AD+R+ + KR++L
Sbjct: 634 ARL-EFLRETYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRYQK--KRNQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + L + NLST+ AV +K++LR MAQPF D G++ SL L K +A+
Sbjct: 691 PKWINQALLEADANLSTDMAVSNAKKFLRDMAQPFHARDQEGISTWSLRD-LRKHQEQAD 749
Query: 936 EEEV 939
+ +
Sbjct: 750 HDRI 753
>gi|71020135|ref|XP_760298.1| hypothetical protein UM04151.1 [Ustilago maydis 521]
gi|46100007|gb|EAK85240.1| hypothetical protein UM04151.1 [Ustilago maydis 521]
Length = 850
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/420 (48%), Positives = 279/420 (66%), Gaps = 47/420 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VS+ER GK+VD RC +TSS + R G ++ +C+F+E+ + + GV+++
Sbjct: 154 VSRERKGKVVDARCRDMTSSWACEKGRQDPG-SVELCNFHEELGKMEPGQLIPQGVWTLE 212
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
++KE RE +CPYF R+ + I++YS+HYLLDPK+A VSKE+++ ++VVFDEAHN
Sbjct: 213 EVKEYAREKAICPYFAIRRMMPFVDIIIYSFHYLLDPKVAEQVSKEMSKDAIVVFDEAHN 272
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + R ++ A +I L + E+K+ D++KL++EYARLVEGL+
Sbjct: 273 IDNVCIESLSIDLTRPMLDSAYRSINQLSERVDEIKKTDASKLQDEYARLVEGLQQQGEQ 332
Query: 179 RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL 238
RE + +ANPVLPD++LQE VPGNIR AEHFV FLKRF+EYLKTR+RV VV E+PA+FL
Sbjct: 333 REAESFMANPVLPDDLLQEAVPGNIRRAEHFVAFLKRFVEYLKTRMRVLHVVAETPASFL 392
Query: 239 KDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRF 298
+ LKDI+ IERKPLRF
Sbjct: 393 Q-----------------------------------------HLKDITY---IERKPLRF 408
Query: 299 CAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLY 358
CAERL L+ TLE+T L +FS+L + ATLV++Y KGF +I+EPF + TVPNP+ +
Sbjct: 409 CAERLRMLVGTLELTRLDEFSALQKVAAFATLVATYDKGFLLILEPFETENATVPNPIFH 468
Query: 359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
F CLD+SLAI PVF+RF +V+ITSGT+SPLDMYPK+L F ++ S++MTL R C LP+V
Sbjct: 469 FTCLDASLAIAPVFERFSSVIITSGTISPLDMYPKMLKFDAIVQESYAMTLTRQCFLPLV 528
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 137/198 (69%), Gaps = 3/198 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
VS+ER GK+VD RC +TSS + R G ++ +C+F+E+ + + GV+++
Sbjct: 154 VSRERKGKVVDARCRDMTSSWACEKGRQDPG-SVELCNFHEELGKMEPGQLIPQGVWTLE 212
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
++KE RE +CPYF R+ + I++YS+HYLLDPK+A VSKE+++ ++VVFDEAHN
Sbjct: 213 EVKEYAREKAICPYFAIRRMMPFVDIIIYSFHYLLDPKVAEQVSKEMSKDAIVVFDEAHN 272
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC++SLS+ + R ++ A +I L + E+K+ D++KL++EYARLVEGL+
Sbjct: 273 IDNVCIESLSIDLTRPMLDSAYRSINQLSERVDEIKKTDASKLQDEYARLVEGLQQQGEQ 332
Query: 834 RETDVVLANPVLPDEILQ 851
RE + +ANPVLPD++LQ
Sbjct: 333 REAESFMANPVLPDDLLQ 350
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/154 (51%), Positives = 91/154 (59%), Gaps = 36/154 (23%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID+LPV FPY IYPEQYAYM +LK+ LDA GHC+LEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFYIDELPVLFPYPKIYPEQYAYMTDLKRTLDANGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK------------------------ 519
HP KL+YCSRTVPEIEK + EL RL +Y +
Sbjct: 61 QFHPAK-RKLIYCSRTVPEIEKALAELKRLMEYRARYNVQQDQASGVLKKESQSSDRPGE 119
Query: 520 HNEEINMTG-----------LVLSSRKNLCIHSE 542
HN E+N G L LSSRKNLCIH +
Sbjct: 120 HNIEMNGKGNTGSQMEDILALGLSSRKNLCIHPD 153
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 80/125 (64%), Gaps = 6/125 (4%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C +P V+ + + + S FE R+D +V+RNYG +L++ A VPDG+V FF SYLY+ES
Sbjct: 523 CFLP-LVITRGSDQVAISSRFEVRNDPAVVRNYGSILIEYAKCVPDGIVAFFPSYLYMES 581
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHK 682
+VA+W+D GI+D + K KL+FIET DA ++ S++ E + D GR L S + R K
Sbjct: 582 IVAAWHDMGILDEVWKYKLIFIETPDAPET-SIALENYRRACDNGRGAILLSVA---RGK 637
Query: 683 AGENI 687
E I
Sbjct: 638 VSEGI 642
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 79/124 (63%), Gaps = 10/124 (8%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GKTDYG+M+FADKRFAR+DKR+KL
Sbjct: 669 ARL-EFLRDNFRIRENDFLTFDAMRHAAQCVGRVLRGKTDYGLMVFADKRFARADKRNKL 727
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI +Y+ + +NLST+ A+ SK ++R MAQP+ G +SL +L + E +A+
Sbjct: 728 PKWIAQYIKETHSNLSTDMAIVESKLFIRSMAQPYPE----GKNGVSLWELADIESRQAK 783
Query: 936 EEEV 939
E E
Sbjct: 784 ERET 787
>gi|75858956|ref|XP_868818.1| hypothetical protein AN9436.2 [Aspergillus nidulans FGSC A4]
gi|40747660|gb|EAA66816.1| hypothetical protein AN9436.2 [Aspergillus nidulans FGSC A4]
Length = 797
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/424 (48%), Positives = 277/424 (65%), Gaps = 50/424 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++ L
Sbjct: 120 VKREKSGTVVDARCRSLTAGFVKEKKEKGEDVELCVYHENLDLLEPHNLVPPGVFTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAII------HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 114
G + CPYF AR+ + + +++YSYHYLLDPKIA VSKE ++ +VVFD
Sbjct: 180 LNYGEQHKQCPYFSARRMPLTPVQMPYCNVIIYSYHYLLDPKIAERVSKEFSKDCIVVFD 239
Query: 115 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRD 174
EAHNIDNVC++SLS+ I ++ KA LE ++++K +D+ KL EY +LVEGLR+
Sbjct: 240 EAHNIDNVCIESLSIDITEDSLRKATRGANNLERKIQDVKSSDAEKLNNEYMKLVEGLRE 299
Query: 175 AQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESP 234
A+ AR+ D ++NPVLPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V + E+P
Sbjct: 300 AEQARDEDQFISNPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETP 359
Query: 235 ATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERK 294
+FL H+K TF IERK
Sbjct: 360 LSFLN-----------------------HVKE------------LTF---------IERK 375
Query: 295 PLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPN 354
PLRFCAERL SL+RTLE+ N+ D+ L + ATLVS+Y KGF +I+EPF +A TVPN
Sbjct: 376 PLRFCAERLTSLVRTLELINIEDYQPLQEVATFATLVSTYDKGFLLILEPFESEAATVPN 435
Query: 355 PVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCL 414
PVL+F CLD+++AIKPVFDRF +VVITSGTLSPL+MYPK+L F V+ S+SMTLAR
Sbjct: 436 PVLHFTCLDAAIAIKPVFDRFSSVVITSGTLSPLEMYPKMLGFTTVMQESYSMTLARRSF 495
Query: 415 LPMV 418
LPM+
Sbjct: 496 LPMI 499
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 136/203 (66%), Gaps = 6/203 (2%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C ++E D + + PGV+++
Sbjct: 119 SVKREKSGTVVDARCRSLTAGFVKEKKEKGEDVELCVYHENLDLLEPHNLVPPGVFTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAII------HAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
L G + CPYF AR+ + + +++YSYHYLLDPKIA VSKE ++ +VVF
Sbjct: 179 LLNYGEQHKQCPYFSARRMPLTPVQMPYCNVIIYSYHYLLDPKIAERVSKEFSKDCIVVF 238
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 828
DEAHNIDNVC++SLS+ I ++ KA LE ++++K +D+ KL EY +LVEGLR
Sbjct: 239 DEAHNIDNVCIESLSIDITEDSLRKATRGANNLERKIQDVKSSDAEKLNNEYMKLVEGLR 298
Query: 829 DAQSARETDVVLANPVLPDEILQ 851
+A+ AR+ D ++NPVLPD++L+
Sbjct: 299 EAEQARDEDQFISNPVLPDDLLK 321
Score = 142 bits (358), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 93/145 (64%), Gaps = 16/145 (11%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT +LLSLIVAY
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVTLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMT----GLVLSSRKNLCI 539
+P + KL+YCSRT+ EIEK + EL L + +E++ T L L+SRKNLC+
Sbjct: 61 QHYP-EHRKLIYCSRTMSEIEKALAELRELMKF---RSEQLGYTEDFRALGLTSRKNLCL 116
Query: 540 HSEFETRDDISVIRNYGQLLVDIAC 564
H SV R +VD C
Sbjct: 117 HP--------SVKREKSGTVVDARC 133
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 74/123 (60%), Gaps = 8/123 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYGIM+ AD+RF + KR++L
Sbjct: 640 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFQK--KRNQL 696
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + L ++ TNLST+ AV +K +LR MAQPF +D G++ SL L + +
Sbjct: 697 PKWISQALLESETNLSTDMAVATAKNFLRTMAQPFKAKDQEGISTWSLADLERHRQKQIQ 756
Query: 936 EEE 938
E+E
Sbjct: 757 EQE 759
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG ++++ + + PDGVV FF SYLY+ES+++ W GI+D++
Sbjct: 509 ISSSFQIRNDPGVVRNYGNIVLEFSRITPDGVVVFFPSYLYMESIISMWQGMGILDSIWN 568
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA +S
Sbjct: 569 YKLILVETPDAQES 582
>gi|345562800|gb|EGX45813.1| hypothetical protein AOL_s00117g18 [Arthrobotrys oligospora ATCC
24927]
Length = 749
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 220/485 (45%), Positives = 301/485 (62%), Gaps = 75/485 (15%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE + C +++ D + + PGVY++ +
Sbjct: 79 VKREKKGTVVDARCRSLTAGFVKEKKEKGEEVESCIYHDNLDLLEPHNLIPPGVYTLDGM 138
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF AR+ + + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNID
Sbjct: 139 LKYGEDQKQCPYFTARRMMPYCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 198
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ I ++ KA +LE +++MK D+ KL++EYA+LVEGL+DA +ARE
Sbjct: 199 NVCIESLSIDITEDSLRKAARGCTSLEKKIEDMKSTDADKLQQEYAKLVEGLQDASTARE 258
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANPVLPD++L+E VPGNIR AEHFV FLKRF+EYLKTR++V V+ E+P +FL
Sbjct: 259 EDSFMANPVLPDDLLKEAVPGNIRRAEHFVAFLKRFVEYLKTRMKVLHVISETPPSFL-- 316
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+HLK TF IE+KPLRFCA
Sbjct: 317 ---------------------QHLKD------------LTF---------IEKKPLRFCA 334
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE++N+ +F +L + ATLV++Y KGF +I+EPF + TVPNP+ +F
Sbjct: 335 ERLTSLIRTLELSNVEEFQALQEVATFATLVATYEKGFLLILEPFESETATVPNPIFHFT 394
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM--- 417
CLD+S+AIKPVFDRF +VVITSGT+SPL+MYPK+L F V+ S++MTLAR LPM
Sbjct: 395 CLDASIAIKPVFDRFWSVVITSGTISPLEMYPKMLQFDCVVQESYAMTLARRSFLPMVVT 454
Query: 418 -------------------VRENYAMGLMI-------DDLPVFFPYEYIYPEQYAYMVEL 451
V NY LMI D L +FFP Y+Y E M +
Sbjct: 455 RGSDQVAISSRFEIRNDPSVVRNYG-NLMIEFSKITPDGLVIFFP-SYLYMESIISMWQG 512
Query: 452 KKALD 456
LD
Sbjct: 513 MGILD 517
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 92/197 (46%), Positives = 139/197 (70%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE + C +++ D + + PGVY++
Sbjct: 78 SVKREKKGTVVDARCRSLTAGFVKEKKEKGEEVESCIYHDNLDLLEPHNLIPPGVYTLDG 137
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ + G + CPYF AR+ + + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNI
Sbjct: 138 MLKYGEDQKQCPYFTARRMMPYCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNI 197
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ I ++ KA +LE +++MK D+ KL++EYA+LVEGL+DA +AR
Sbjct: 198 DNVCIESLSIDITEDSLRKAARGCTSLEKKIEDMKSTDADKLQQEYAKLVEGLQDASTAR 257
Query: 835 ETDVVLANPVLPDEILQ 851
E D +ANPVLPD++L+
Sbjct: 258 EEDSFMANPVLPDDLLK 274
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 64/94 (68%), Gaps = 3/94 (3%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYGIM+ ADKRF + KR++LPKWI + L D+ NLS + +V +K++LR MAQ
Sbjct: 625 VLRGKDDYGIMVLADKRFGK--KRNQLPKWIAQALLDSEMNLSVDMSVAAAKKFLRTMAQ 682
Query: 909 PFTREDMLGVALLSLDQL-LEKEHARAEEEEVPR 941
PF ++D G++ SL+ L R ++EE+ R
Sbjct: 683 PFAQKDQEGISTWSLEDLNAHMRKVRIQQEEMER 716
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 54/74 (72%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D SV+RNYG L+++ + + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 462 ISSRFEIRNDPSVVRNYGNLMIEFSKITPDGLVIFFPSYLYMESIISMWQGMGILDEVWK 521
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ ++
Sbjct: 522 YKLILVETPDSQET 535
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 62/101 (61%), Gaps = 10/101 (9%)
Query: 465 MPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI 524
MPSGTGKT SLLSLIVAY +P + KL+YCSRT+ EIEK + EL L +Y K ++
Sbjct: 1 MPSGTGKTVSLLSLIVAYQQHYP-EHRKLIYCSRTMSEIEKALYELKALMEYRAKELGQV 59
Query: 525 -NMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
+ GL L+SRKNLC+H SV R +VD C
Sbjct: 60 EDFRGLGLTSRKNLCLHP--------SVKREKKGTVVDARC 92
>gi|402224656|gb|EJU04718.1| DNA repair helicase [Dacryopinax sp. DJM-731 SS1]
Length = 798
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/423 (47%), Positives = 287/423 (67%), Gaps = 52/423 (12%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAP---LAPGVYS 56
VSKE+ GK+VD RC LT+S+ ++ +A ++P+CD++E+ +G + P + PG+Y+
Sbjct: 126 VSKEKKGKVVDARCRDLTNSAACEKGRANPGSVPLCDWHER---LGEKEPGNLIPPGIYT 182
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
+ ++ + GR+ G+CPYF R+ + +++YS+HYLLDPK+A VSKE ++ ++VVFDEA
Sbjct: 183 LAEVLQYGRDEGVCPYFTIRRMMPFVDVIIYSFHYLLDPKVAEQVSKEFSKDAIVVFDEA 242
Query: 117 HNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQ 176
HNIDNVC++SLS+ + R ++ A ++ L ++E+KE D++KL++EYA+LVEGL++A
Sbjct: 243 HNIDNVCIESLSIDLTRPMLDSATRSVVRLTEKIEEIKETDASKLQDEYAKLVEGLQEAN 302
Query: 177 S-ARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPA 235
+ + D +AN VLPD++L+E +PGNIR AEHF+ FLKRF+EYLKTR+RV VV E+P
Sbjct: 303 NETSDEDAFVANAVLPDDLLKEAIPGNIRKAEHFIAFLKRFVEYLKTRMRVLHVVAETPL 362
Query: 236 TFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKP 295
+FL+ LKDI+ IER+P
Sbjct: 363 SFLQH-----------------------------------------LKDITY---IERRP 378
Query: 296 LRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNP 355
LRFCAERL SL+RTLE+ L ++ +L + ATLV++Y KGF +I+EPF + TVPNP
Sbjct: 379 LRFCAERLQSLVRTLELNQLDEYFALQKVASFATLVATYEKGFLLILEPFETETATVPNP 438
Query: 356 VLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLL 415
+ +F CLD SLAIKP+F+RF +VVITSGT+SPLDMYPK+L F PVI S+ MTL R C L
Sbjct: 439 IFHFTCLDPSLAIKPIFERFSSVVITSGTISPLDMYPKMLQFTPVIQESYPMTLTRNCFL 498
Query: 416 PMV 418
P+V
Sbjct: 499 PLV 501
Score = 189 bits (479), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 87/201 (43%), Positives = 146/201 (72%), Gaps = 8/201 (3%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAP---LAPGVYS 711
VSKE+ GK+VD RC LT+S+ ++ +A ++P+CD++E+ +G + P + PG+Y+
Sbjct: 126 VSKEKKGKVVDARCRDLTNSAACEKGRANPGSVPLCDWHER---LGEKEPGNLIPPGIYT 182
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
+ ++ + GR+ G+CPYF R+ + +++YS+HYLLDPK+A VSKE ++ ++VVFDEA
Sbjct: 183 LAEVLQYGRDEGVCPYFTIRRMMPFVDVIIYSFHYLLDPKVAEQVSKEFSKDAIVVFDEA 242
Query: 772 HNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQ 831
HNIDNVC++SLS+ + R ++ A ++ L ++E+KE D++KL++EYA+LVEGL++A
Sbjct: 243 HNIDNVCIESLSIDLTRPMLDSATRSVVRLTEKIEEIKETDASKLQDEYAKLVEGLQEAN 302
Query: 832 S-ARETDVVLANPVLPDEILQ 851
+ + D +AN VLPD++L+
Sbjct: 303 NETSDEDAFVANAVLPDDLLK 323
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 87/126 (69%), Gaps = 8/126 (6%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID LP+ FPY+ IYPEQY+YM +LKK LDA+GH +LEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFNIDGLPIIFPYDRIYPEQYSYMCDLKKTLDAQGHGVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNE-------EINMTGLVLSSRKN 536
P KL+YCSRTVPEIEK + EL RL Y + E E + GL L+SRKN
Sbjct: 61 QHSP-HPRKLIYCSRTVPEIEKALSELQRLMKYRVSQAETPEERMKEESFIGLGLTSRKN 119
Query: 537 LCIHSE 542
LC+H +
Sbjct: 120 LCLHPD 125
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 84/120 (70%), Gaps = 7/120 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRDA RE++ + + + +L+GKTD+G+M+FADKR+AR+DKR+KL
Sbjct: 642 ARL-EYLRDAYRIRESEFLAFDAMRNAAQCVGRVLRGKTDWGLMVFADKRYARADKRAKL 700
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
P+W+ +Y+++ +NLST+ A+ LSK ++RQ++Q E+ G++L +L+ + +++ A E
Sbjct: 701 PRWMNQYISETASNLSTDMAIVLSKLFMRQISQN-PNENQTGISLWTLEHIEQRQAAERE 759
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C +P V+ + + + S FE R+D +V+RN+G +L++ + +VPDG+V FF SYLY+ES
Sbjct: 496 CFLP-LVITRGSDQVAVSSRFEVRNDPAVVRNFGSILIEYSKIVPDGIVAFFPSYLYMES 554
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDA 650
+VA+W D GI++ + K KL+F+ET DA
Sbjct: 555 IVAAWNDMGILNEVWKNKLIFVETPDA 581
>gi|358399042|gb|EHK48385.1| hypothetical protein TRIATDRAFT_214371 [Trichoderma atroviride IMI
206040]
Length = 769
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/418 (47%), Positives = 274/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ GEN+ VC +++ D + + GV+S L
Sbjct: 96 VKREKSGSVVDARCRSLTAGFVKEKKDRGENVDVCVYHDNLDLLEPHNLIPNGVWSFDAL 155
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G E CPYF AR+ + + +V++SYHYLLDPKIA V+K+ ++ +VVFDEAHNID
Sbjct: 156 LKYGEEHKQCPYFTARRMMQYCNVVIFSYHYLLDPKIAERVTKDFSKDCIVVFDEAHNID 215
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I +I KA + Q LE + EM+E D +L+ EY +LV+GLR+A +R+
Sbjct: 216 NVCIESLSTDITEDSIRKATRSAQHLERRIAEMRETDQEQLQNEYEKLVQGLREADESRQ 275
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANP LPD++L+E VPGNIR AEHFV FLKRF+EYLKTR++V+QV+ E+P +FL
Sbjct: 276 EDAFMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFLEYLKTRMKVRQVISETPLSFLA- 334
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IERKPLRFCA
Sbjct: 335 ----------------------HLKEH------------TF---------IERKPLRFCA 351
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ D+ +L + ATLV++Y KGF +I+EP+ VPNP L+F
Sbjct: 352 ERLTSLVRTLELMNIEDYQALQEVATFATLVATYEKGFLLILEPYESDTAEVPNPTLHFT 411
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AI+PVF+RF +V+ITSGT+SPL+MYPK+L+F VI S+SMTLAR LPM+
Sbjct: 412 CLDAAIAIRPVFERFYSVIITSGTISPLEMYPKMLDFATVIQESYSMTLARRSFLPMI 469
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 132/197 (67%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ GEN+ VC +++ D + + GV+S
Sbjct: 95 SVKREKSGSVVDARCRSLTAGFVKEKKDRGENVDVCVYHDNLDLLEPHNLIPNGVWSFDA 154
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L + G E CPYF AR+ + + +V++SYHYLLDPKIA V+K+ ++ +VVFDEAHNI
Sbjct: 155 LLKYGEEHKQCPYFTARRMMQYCNVVIFSYHYLLDPKIAERVTKDFSKDCIVVFDEAHNI 214
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I +I KA + Q LE + EM+E D +L+ EY +LV+GLR+A +R
Sbjct: 215 DNVCIESLSTDITEDSIRKATRSAQHLERRIAEMRETDQEQLQNEYEKLVQGLREADESR 274
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANP LPD++L+
Sbjct: 275 QEDAFMANPALPDDLLK 291
Score = 105 bits (263), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 72/118 (61%), Gaps = 10/118 (8%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M +LKK LDA GHC+LEMPSGTGKT SLLSLIVAY P + KL+YCSRT+ EIEK +
Sbjct: 1 MCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQQHMP-EKRKLIYCSRTMSEIEKAL 59
Query: 508 EELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
EL L Y + E GL L+SRKNLC+H SV R +VD C
Sbjct: 60 VELQSLMKYRAEELGYEEEFRGLGLTSRKNLCLHP--------SVKREKSGSVVDARC 109
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 63/90 (70%), Gaps = 4/90 (4%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYG+M+ AD+RF + KR++LPKWI + L+D TNLST+ AV ++R+L+ MAQ
Sbjct: 642 VLRGKDDYGVMVLADRRFQK--KRTQLPKWINQGLSDADTNLSTDMAVSSARRFLKTMAQ 699
Query: 909 PFTREDMLGVALLSLDQLLEKEHARAEEEE 938
PF +D G++ + L+ +H R EEE
Sbjct: 700 PFRSKDQEGISTWGYEDLM--QHQRKIEEE 727
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 52/72 (72%)
Query: 582 SVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRK 641
S F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W GI+D + K K
Sbjct: 481 SSFQVRNEPSVVRNYGNLLTEFAKITPDGLVVFFPSYLYMESIISMWQGMGILDEVWKYK 540
Query: 642 LLFIETQDALDS 653
L+ +ET DA ++
Sbjct: 541 LILVETPDAQET 552
>gi|443898496|dbj|GAC75831.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, 5'-3' helicase subunit RAD3
[Pseudozyma antarctica T-34]
Length = 851
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/420 (48%), Positives = 278/420 (66%), Gaps = 47/420 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
V +ER GK+VD RC +TSS + R G ++ +CDF+E+ + + GV+++
Sbjct: 154 VGRERKGKVVDARCRDMTSSWACEKGRQDPG-SVQLCDFHEELGKMEPGQLIPQGVWTLE 212
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
++KE R G+CPYF R+ I I+VYS+HYLLDPKIA VSKE+++ ++VVFDEAHN
Sbjct: 213 EVKEYARVKGICPYFAIRRMIPFVDIIVYSFHYLLDPKIAEQVSKEMSKDAIVVFDEAHN 272
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + R ++ A +I L + E+K D++KL++EYARLVEGL++
Sbjct: 273 IDNVCIESLSIDLTRPMLDSAYRSINQLSERVDEIKRTDASKLQDEYARLVEGLQEQGEQ 332
Query: 179 RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL 238
RE + +ANPVLPD++LQE VPGNIR AEHFV FLKRF+EYLKTR+RV VV E+PA+FL
Sbjct: 333 REAESFMANPVLPDDLLQEAVPGNIRRAEHFVAFLKRFVEYLKTRMRVLHVVAETPASFL 392
Query: 239 KDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRF 298
+ LKDI+ IERKPLRF
Sbjct: 393 Q-----------------------------------------HLKDITY---IERKPLRF 408
Query: 299 CAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLY 358
CAERL L+ TLE+T L ++S+L + ATLV++Y KGF +I+EPF + TVPNP+ +
Sbjct: 409 CAERLRMLVGTLELTRLDEYSALQKVAAFATLVATYDKGFLLILEPFETENATVPNPIFH 468
Query: 359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
F CLD+SLAI PVF+RF +V+ITSGT+SPLDMYPK+L F ++ S++MTL R C LP+V
Sbjct: 469 FTCLDASLAIAPVFERFSSVIITSGTISPLDMYPKMLKFDAIVQESYAMTLTRQCFLPLV 528
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/198 (46%), Positives = 136/198 (68%), Gaps = 3/198 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
V +ER GK+VD RC +TSS + R G ++ +CDF+E+ + + GV+++
Sbjct: 154 VGRERKGKVVDARCRDMTSSWACEKGRQDPG-SVQLCDFHEELGKMEPGQLIPQGVWTLE 212
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
++KE R G+CPYF R+ I I+VYS+HYLLDPKIA VSKE+++ ++VVFDEAHN
Sbjct: 213 EVKEYARVKGICPYFAIRRMIPFVDIIVYSFHYLLDPKIAEQVSKEMSKDAIVVFDEAHN 272
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC++SLS+ + R ++ A +I L + E+K D++KL++EYARLVEGL++
Sbjct: 273 IDNVCIESLSIDLTRPMLDSAYRSINQLSERVDEIKRTDASKLQDEYARLVEGLQEQGEQ 332
Query: 834 RETDVVLANPVLPDEILQ 851
RE + +ANPVLPD++LQ
Sbjct: 333 REAESFMANPVLPDDLLQ 350
Score = 143 bits (360), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 91/154 (59%), Gaps = 36/154 (23%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID+LPV FPY IYPEQYAYM +LK+ LDA GHC+LEMPSGTGKT SL SLIV+Y
Sbjct: 1 MKFYIDELPVLFPYPKIYPEQYAYMTDLKRTLDANGHCVLEMPSGTGKTVSLFSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN---------------------- 521
HP KL+YCSRTVPEIEK + EL RL +Y ++N
Sbjct: 61 LFHPAK-RKLIYCSRTVPEIEKALAELKRLMEYRARYNVPEGEESHVAKSDADGTNGPAD 119
Query: 522 EEINMTG-------------LVLSSRKNLCIHSE 542
++I M G L LSSRKNLCIH +
Sbjct: 120 DDIEMKGRGKAGGQMEDILALGLSSRKNLCIHPD 153
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 80/125 (64%), Gaps = 6/125 (4%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C +P V+ + + + S FE R+D +V+RNYG +L++ A VPDG+V FF SYLY+ES
Sbjct: 523 CFLP-LVITRGSDQVAISSRFEVRNDPAVVRNYGSILIEYAKCVPDGIVAFFPSYLYMES 581
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHK 682
+VA+W+D GI+D + K KL+FIET DA ++ S++ E + D GR L S + R K
Sbjct: 582 IVAAWHDMGILDEVWKYKLIFIETPDAPET-SIALENYRRACDNGRGAILLSVA---RGK 637
Query: 683 AGENI 687
E I
Sbjct: 638 VSEGI 642
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 79/124 (63%), Gaps = 10/124 (8%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GKTDYG+M+FADKRFAR+DKR+KL
Sbjct: 669 ARL-EFLRDNFRIRENDFLTFDAMRHAAQCVGRVLRGKTDYGLMVFADKRFARADKRNKL 727
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI +Y+ + +NLST+ A+ SK ++R MAQP+ G +SL +L + E +A+
Sbjct: 728 PKWIAQYIKETHSNLSTDMAIVESKLFIRSMAQPYPE----GKNGVSLWELADIETRQAK 783
Query: 936 EEEV 939
E E
Sbjct: 784 ERET 787
>gi|310798566|gb|EFQ33459.1| DNA repair helicase [Glomerella graminicola M1.001]
Length = 791
Score = 408 bits (1048), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/418 (48%), Positives = 270/418 (64%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G IVD RC SLT+ V+++ GE++ VC +++ D + + GV++ L
Sbjct: 120 VKQEKSGAIVDARCRSLTAGFVKEKKDRGESVDVCVYHDNLDLLEPHNLIPNGVWTFEGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G + CPYF AR+ + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNID
Sbjct: 180 LRYGEQHKQCPYFTARRMMQFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I ++ KA Q LE + EM++ D +L+ EY +LVEGLR A AR+
Sbjct: 240 NVCIESLSTDITEDSLRKATRGAQNLERRIAEMRDTDQEQLQNEYQKLVEGLRGADEARQ 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANP LPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V+ + E+P +FL
Sbjct: 300 EDAFMANPALPDDLLKEAVPGNIRRAEHFVSFLKRFIEYLKTRMKVRHTISETPPSFLA- 358
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPLRFCA
Sbjct: 359 ----------------------HLKE------------YTF---------IEKKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EPF + VPNPVL+F
Sbjct: 376 ERLTSLVRTLELTNIEDYQPLQEVATFATLVATYEKGFLLILEPFESETAEVPNPVLHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGT+SPL+MYPK+L F V+ S+SMTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFDRFSSVIITSGTMSPLEMYPKMLGFSTVVQESYSMTLARRSFLPMI 493
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 129/197 (65%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G IVD RC SLT+ V+++ GE++ VC +++ D + + GV++
Sbjct: 119 SVKQEKSGAIVDARCRSLTAGFVKEKKDRGESVDVCVYHDNLDLLEPHNLIPNGVWTFEG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L G + CPYF AR+ + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNI
Sbjct: 179 LLRYGEQHKQCPYFTARRMMQFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I ++ KA Q LE + EM++ D +L+ EY +LVEGLR A AR
Sbjct: 239 DNVCIESLSTDITEDSLRKATRGAQNLERRIAEMRDTDQEQLQNEYQKLVEGLRGADEAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANP LPD++L+
Sbjct: 299 QEDAFMANPALPDDLLK 315
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/118 (62%), Positives = 85/118 (72%), Gaps = 2/118 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID+LPV FPY IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFFIDELPVIFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY-YIKHNEEINMTGLVLSSRKNLCIH 540
+P + KL+YCSRT+ EIEK + EL L Y + EE GL L+SRKNLC+H
Sbjct: 61 QHNP-EHRKLIYCSRTMSEIEKALAELKALMKYRAEELGEEEEFRGLGLTSRKNLCLH 117
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 72/113 (63%), Gaps = 8/113 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYGIM+ AD+RF + KR++L
Sbjct: 634 ARL-EFLRETYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFQK--KRAQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLE 928
PKWI + L D TN+ST+ AV ++R+L+QMAQPF +D GV+ S + L++
Sbjct: 691 PKWINQGLLDADTNVSTDMAVSSARRFLKQMAQPFRAKDQEGVSTWSYEDLMK 743
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 52/74 (70%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ + F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W I++ + K
Sbjct: 503 ISTSFQVRNEPSVVRNYGTLLTEFAKITPDGMVVFFPSYLYMESIISMWQGMNILEEVWK 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 563 YKLILVETPDAQET 576
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVI 593
I + F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+ ++++
Sbjct: 503 ISTSFQVRNEPSVVRNYGTLLTEFAKITPDGMVVFFPSYLYMESIISMWQGMNIL 557
>gi|453084907|gb|EMF12951.1| DNA repair helicase RAD3 [Mycosphaerella populorum SO2202]
Length = 806
Score = 407 bits (1047), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/418 (46%), Positives = 276/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C +++ D + + PGV+++ +
Sbjct: 120 VKREKSGSVVDARCRSLTAGFVKEKKERGEDVDLCIYHDNLDLLEPHNLIPPGVWTLDGM 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF AR+ + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNID
Sbjct: 180 LRYGEEQKQCPYFTARRMMPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA + L+ +KEMK+ D+ KL+ EYA+LVEGLR+A +AR+
Sbjct: 240 NVCIESLSIDLTEDSLRKAARGAENLDRKIKEMKDTDAEKLQNEYAKLVEGLREADTARD 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
++NP LPD++L+E VPGNIR AEHF FLKRFIEYLKTR++V V+ E+P +FL
Sbjct: 300 EGAFMSNPALPDDLLKEAVPGNIRRAEHFTAFLKRFIEYLKTRMKVLHVISETPPSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+HLK TF IE+KPLRFCA
Sbjct: 358 ---------------------QHLKE------------LTF---------IEKKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATL ++Y GF +I+EP+ TVPNPVL+F
Sbjct: 376 ERLTSLVRTLELTNIEDYQPLQEVATFATLAATYDTGFLLILEPYESDTATVPNPVLHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVF+RF +V+ITSGT+SPL+MYPK+L F V+ S++MTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFERFSSVIITSGTISPLEMYPKMLGFSAVVQESYAMTLARRSFLPMI 493
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 137/197 (69%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C +++ D + + PGV+++
Sbjct: 119 SVKREKSGSVVDARCRSLTAGFVKEKKERGEDVDLCIYHDNLDLLEPHNLIPPGVWTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ G E CPYF AR+ + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNI
Sbjct: 179 MLRYGEEQKQCPYFTARRMMPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA + L+ +KEMK+ D+ KL+ EYA+LVEGLR+A +AR
Sbjct: 239 DNVCIESLSIDLTEDSLRKAARGAENLDRKIKEMKDTDAEKLQNEYAKLVEGLREADTAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ ++NP LPD++L+
Sbjct: 299 DEGAFMSNPALPDDLLK 315
Score = 140 bits (353), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 86/130 (66%), Gaps = 2/130 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M I DLPV FPY IYPEQYAYM +LK LDA GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFFIGDLPVLFPYPRIYPEQYAYMCDLKHTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRT+ EIEK + EL L Y + + GL L+SRKNLC+H
Sbjct: 61 QHYP-EHRKLIYCSRTMSEIEKALAELKALMKYRADQLGVVEDFRGLGLTSRKNLCLHPS 119
Query: 543 FETRDDISVI 552
+ SV+
Sbjct: 120 VKREKSGSVV 129
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+TR D + IRNYG L+++ + + PDG+V FF SYLY+ESV++ W GI+D + K
Sbjct: 503 ISSGFQTRSDPANIRNYGNLIIEFSKLTPDGIVVFFPSYLYMESVISMWQSMGILDQVWK 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ ++
Sbjct: 563 SKLILVETPDSQET 576
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 70/112 (62%), Gaps = 8/112 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYGIM+ ADKRFA+ KR++L
Sbjct: 634 ARL-EFLRETYRIRENDFLSFDAMRHCAQCLGRVLRGKDDYGIMVMADKRFAK--KRNQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLL 927
PKWI + ++ +N+S ++AV +KR+L+QM++PF G++ S + LL
Sbjct: 691 PKWISGEMMESDSNMSVDQAVAAAKRFLKQMSKPFPASMQDGISTWSYEDLL 742
>gi|268570745|ref|XP_002640826.1| Hypothetical protein CBG15713 [Caenorhabditis briggsae]
Length = 755
Score = 407 bits (1047), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/418 (49%), Positives = 276/418 (66%), Gaps = 50/418 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R G VD C LTSSSVR + + I CDF+E F+A G P+ GV+++ L
Sbjct: 121 VAALRFGNTVDSACQKLTSSSVRAKRQENSEIEGCDFFENFEANG--FPMQNGVWNLEDL 178
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+++GRE +CPYF AR AI A IVVYSYHY+LDPKIA +VSK+ +R SVVVFDEAHNID
Sbjct: 179 RQLGRERKICPYFTARNAINRAHIVVYSYHYILDPKIAELVSKDFSRKSVVVFDEAHNID 238
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++S+SV I+++ ++A+ +Q LE + +K A+S KL+ EY +LVEGL+ A+ R
Sbjct: 239 NVCIESMSVAISQKNADRALQELQNLEQVVGRIKSANSEKLQNEYDKLVEGLKRAERERA 298
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D LANP +PD+IL+E VPGNIR A HF+ FLKRF+EY++ RLR QV+ ESPA F+KD
Sbjct: 299 NDERLANPCIPDDILKEAVPGNIRQANHFLLFLKRFVEYVRHRLRTHQVLIESPAAFMKD 358
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
I ++CIER+P+RFCA
Sbjct: 359 --------------------------------------------IQERMCIERRPMRFCA 374
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERLA+L+RTLEIT+ D +L +T + TLVS+Y+KGF++IVEP D + +
Sbjct: 375 ERLANLVRTLEITDNGDVWALSQVTTMCTLVSTYSKGFSVIVEP-QDGSQMA---TITLS 430
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C D+S+AI+PV R Q+V+ITSGTLSPL+MYPKIL+F P ++ SF+MTLARPCL P+V
Sbjct: 431 CHDASIAIRPVLHRHQSVIITSGTLSPLEMYPKILDFDPAVVASFTMTLARPCLAPLV 488
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/196 (51%), Positives = 138/196 (70%), Gaps = 2/196 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
V+ R G VD C LTSSSVR + + I CDF+E F+A G P+ GV+++ L
Sbjct: 121 VAALRFGNTVDSACQKLTSSSVRAKRQENSEIEGCDFFENFEANG--FPMQNGVWNLEDL 178
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
+++GRE +CPYF AR AI A IVVYSYHY+LDPKIA +VSK+ +R SVVVFDEAHNID
Sbjct: 179 RQLGRERKICPYFTARNAINRAHIVVYSYHYILDPKIAELVSKDFSRKSVVVFDEAHNID 238
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC++S+SV I+++ ++A+ +Q LE + +K A+S KL+ EY +LVEGL+ A+ R
Sbjct: 239 NVCIESMSVAISQKNADRALQELQNLEQVVGRIKSANSEKLQNEYDKLVEGLKRAERERA 298
Query: 836 TDVVLANPVLPDEILQ 851
D LANP +PD+IL+
Sbjct: 299 NDERLANPCIPDDILK 314
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/142 (53%), Positives = 100/142 (70%), Gaps = 9/142 (6%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L ID L V FPY+Y+YPEQ YM E+KKALDA GH LLEMPSGTGKT SLLSL+++YM
Sbjct: 1 MQLDIDGLKVLFPYDYVYPEQVLYMKEVKKALDANGHGLLEMPSGTGKTVSLLSLVLSYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNE-EINMTGLVLSSRKNLCIHSE 542
++P + KL+YCSRT+PEIEK VEE+ L+DY+ K + + +S+RKNLCI+
Sbjct: 61 ISYPDRLDKLVYCSRTIPEIEKCVEEMKVLYDYWEKETGVPVAKITVAMSARKNLCIN-- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
+ ++ +R +G VD AC
Sbjct: 119 ----EKVAALR-FGN-TVDSAC 134
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 78/118 (66%), Gaps = 6/118 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD+ RE D + + + L+ KTDYG+M+FADKRF+R DKR KL
Sbjct: 629 ARL-EYLRDSFGIRENDFLTFDAMRHTAQCMGRALRSKTDYGLMVFADKRFSRQDKRGKL 687
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHAR 933
P+W+QEYL TNLS +EA Q+++RWL MAQPF +E LGV+LL+ + + + + R
Sbjct: 688 PRWMQEYLETASTNLSIDEAAQVARRWLTLMAQPFEKEHQLGVSLLNREMVQDGQTMR 745
Score = 103 bits (256), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 78/124 (62%), Gaps = 4/124 (3%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P VV + + S FE R D++VIRNYG L++++A +VPDG+V FFTSYLY+E+
Sbjct: 483 CLAP-LVVARGNDQVAMTSRFEQRADVAVIRNYGNLVLEMASLVPDGMVVFFTSYLYMEN 541
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKA 683
V+ WY+Q IID L K KLLFIET DAL++ + ++ GR L S + R K
Sbjct: 542 VIGVWYEQHIIDELMKYKLLFIETNDALETSAALEKYVEACDSGRGAVLFSVA---RGKV 598
Query: 684 GENI 687
E I
Sbjct: 599 SEGI 602
>gi|340514003|gb|EGR44274.1| DNA excision repair helicase [Trichoderma reesei QM6a]
Length = 783
Score = 407 bits (1046), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/418 (47%), Positives = 273/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G IVD RC SLT+ V+++ GEN+ VC +++ D + + GV+S L
Sbjct: 110 VKREKSGSIVDARCRSLTAGFVKEKKDRGENVDVCVYHDNLDLLEPHNLIPNGVWSFDAL 169
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF AR+ + + +V++SYHYLLDPKIA VSK+ ++ +VVFDEAHNID
Sbjct: 170 LRYGEEHKQCPYFTARRMMEYCNVVIFSYHYLLDPKIAERVSKDFSKDCIVVFDEAHNID 229
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+++LS I +I KA + Q LE + EM+E D +L+ EY +LV+GLR A +R+
Sbjct: 230 NVCIEALSTDITEDSIRKATRSAQHLERRIAEMRETDQEQLQNEYEKLVQGLRAADESRQ 289
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANP LPD++L+E VPGNIR AEHFV FLKRF+EYLKTR++V+QV+ E+P +FL
Sbjct: 290 EDAFMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFLEYLKTRMKVRQVISETPPSFLA- 348
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPLRFCA
Sbjct: 349 ----------------------HLKEH------------TF---------IEKKPLRFCA 365
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ +L + ATLV++Y KGF +I+EP+ VPNP L+F
Sbjct: 366 ERLTSLVRTLELTNIEDYQALQEVATFATLVATYEKGFLLILEPYESDTAEVPNPTLHFT 425
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AI+PVF+RF +V+ITSGT+SPL+MYPK+L+F VI S+SMTLAR LPM+
Sbjct: 426 CLDAAIAIRPVFERFYSVIITSGTISPLEMYPKMLDFATVIQESYSMTLARKSFLPMI 483
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 130/197 (65%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G IVD RC SLT+ V+++ GEN+ VC +++ D + + GV+S
Sbjct: 109 SVKREKSGSIVDARCRSLTAGFVKEKKDRGENVDVCVYHDNLDLLEPHNLIPNGVWSFDA 168
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L G E CPYF AR+ + + +V++SYHYLLDPKIA VSK+ ++ +VVFDEAHNI
Sbjct: 169 LLRYGEEHKQCPYFTARRMMEYCNVVIFSYHYLLDPKIAERVSKDFSKDCIVVFDEAHNI 228
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC+++LS I +I KA + Q LE + EM+E D +L+ EY +LV+GLR A +R
Sbjct: 229 DNVCIEALSTDITEDSIRKATRSAQHLERRIAEMRETDQEQLQNEYEKLVQGLRAADESR 288
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANP LPD++L+
Sbjct: 289 QEDAFMANPALPDDLLK 305
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/142 (50%), Positives = 81/142 (57%), Gaps = 20/142 (14%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID+LPV FPY IYPE LDA GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFNIDNLPVLFPYPRIYPE----------TLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 50
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
P + KL+YCSRT+ EIEK + EL L Y + E GL L+SRKNLC+H
Sbjct: 51 QHMP-EKRKLIYCSRTMSEIEKALVELQSLMKYRTEQLGYEEEFRGLGLTSRKNLCLHP- 108
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 109 -------SVKREKSGSIVDARC 123
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYG+M+ AD+RF + KR++LPKWI + L+D TNLST+ AV ++R+L+ MAQ
Sbjct: 656 VLRGKDDYGVMVLADRRFQK--KRNQLPKWINQGLSDADTNLSTDMAVSAARRFLKTMAQ 713
Query: 909 PFTREDMLGVALLSLDQLLEKE 930
PF +D G++ + LL +
Sbjct: 714 PFRSKDQEGISTWGYEDLLRHQ 735
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 493 ISSSFQVRNEPSVVRNYGSLLTEFAKITPDGMVVFFPSYLYMESIISMWQGMGILDEVWK 552
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 553 YKLILVETPDAQET 566
>gi|389748846|gb|EIM90023.1| DNA repair helicase [Stereum hirsutum FP-91666 SS1]
Length = 802
Score = 407 bits (1046), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/422 (47%), Positives = 282/422 (66%), Gaps = 53/422 (12%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAP---LAPGVYS 56
VSKE+ GK+VD RC +T+S+ + +A ++ +CDF+EK +G P + PG+++
Sbjct: 126 VSKEKKGKVVDARCRDMTNSAACQKGRANPGSVDLCDFHEK---LGEREPGNLIPPGIWT 182
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
+ + + GR+ G CPYF R+ + IV+YS+HYLLDPK+A VSKE+++ S+VVFDEA
Sbjct: 183 LADVMDYGRQQGTCPYFTVRRMLPFVDIVIYSFHYLLDPKVAEQVSKEMSKDSIVVFDEA 242
Query: 117 HNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQ 176
HNIDNVC++SLS+ + R ++ A ++ L + E+K+ D++KL++EYA+LVEGL+DA
Sbjct: 243 HNIDNVCIESLSIDLTRPMLDSAARSVNKLGDKIDEIKKTDASKLQDEYAKLVEGLQDAA 302
Query: 177 SARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPAT 236
S + D ++NPVLP+++L E +PGNIR AEHFV FLKRF+EYLKTR+RV VV E+P +
Sbjct: 303 S--DEDAFMSNPVLPEDLLNEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAETPLS 360
Query: 237 FLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPL 296
FL+ LKDI+ IER+PL
Sbjct: 361 FLQ-----------------------------------------HLKDITY---IERRPL 376
Query: 297 RFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPV 356
RFCAERL SL++TLEI L +FS+L + ATLVS+Y KGF +I+EPF TVPNP+
Sbjct: 377 RFCAERLQSLVKTLEINRLDEFSALQKVASFATLVSTYEKGFLLILEPFETDNATVPNPI 436
Query: 357 LYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLP 416
+F CLD ++AIKPVF+RF +VVITSGT+SPLDMYPK+L F PV+ +++MTL R LP
Sbjct: 437 FHFTCLDPAIAIKPVFERFSSVVITSGTISPLDMYPKMLQFTPVVQETYAMTLTRNAFLP 496
Query: 417 MV 418
+V
Sbjct: 497 LV 498
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/227 (42%), Positives = 151/227 (66%), Gaps = 17/227 (7%)
Query: 630 DQGIID-NLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NI 687
+QG + L RK L I + VSKE+ GK+VD RC +T+S+ + +A ++
Sbjct: 106 EQGFMGIGLTSRKNLCIHPE-------VSKEKKGKVVDARCRDMTNSAACQKGRANPGSV 158
Query: 688 PVCDFYEKFDAVGREAP---LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 744
+CDF+EK +G P + PG++++ + + GR+ G CPYF R+ + IV+YS+
Sbjct: 159 DLCDFHEK---LGEREPGNLIPPGIWTLADVMDYGRQQGTCPYFTVRRMLPFVDIVIYSF 215
Query: 745 HYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGT 804
HYLLDPK+A VSKE+++ S+VVFDEAHNIDNVC++SLS+ + R ++ A ++ L
Sbjct: 216 HYLLDPKVAEQVSKEMSKDSIVVFDEAHNIDNVCIESLSIDLTRPMLDSAARSVNKLGDK 275
Query: 805 LKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
+ E+K+ D++KL++EYA+LVEGL+DA S + D ++NPVLP+++L
Sbjct: 276 IDEIKKTDASKLQDEYAKLVEGLQDAAS--DEDAFMSNPVLPEDLLN 320
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/126 (61%), Positives = 88/126 (69%), Gaps = 8/126 (6%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLP+ FPY+ IYPEQYAYM +LK+ LDA GHC+LEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFFIDDLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNE-------EINMTGLVLSSRKN 536
P KL+YCSRTVPEIEK + EL RL +Y I E E G+ L+SRKN
Sbjct: 61 QFFPTK-RKLIYCSRTVPEIEKALAELRRLMEYRISQAETEEQRVKEQGFMGIGLTSRKN 119
Query: 537 LCIHSE 542
LCIH E
Sbjct: 120 LCIHPE 125
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 72/109 (66%), Gaps = 5/109 (4%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +LV+ + +VPDG+V FF SYLY+ES+VA+W D GI++ + K
Sbjct: 508 ISSRFEVRNDPAVVRNFGSILVEYSKIVPDGIVAFFPSYLYMESIVAAWNDMGILNEVWK 567
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENI 687
KL+F+ET DA + S++ E + D GR L S + R K E I
Sbjct: 568 HKLIFVETPDA-NETSIALENYRRACDNGRGAVLLSVA---RGKVSEGI 612
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 79/118 (66%), Gaps = 7/118 (5%)
Query: 821 ARLVEGLRDAQSARET-----DVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRDA RE+ D + +L+GKTD+G+M+FADKRFAR+DKR+KL
Sbjct: 639 ARL-EYLRDAYRIRESEFLGFDAMRNAAQCVGRVLRGKTDWGLMVFADKRFARADKRAKL 697
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHAR 933
P+WI +Y+T+ NLST+ A+ LSK ++R ++Q +++ GV+L + + + + + A+
Sbjct: 698 PRWINQYITETAANLSTDMALTLSKLFMRTISQSVG-DNLTGVSLWTKEDVEKAQAAQ 754
>gi|341038606|gb|EGS23598.1| hypothetical protein CTHT_0002930 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 780
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/418 (47%), Positives = 274/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G IVD RC SLT+ V+++ + GE++ VC +++ D + + G++++ L
Sbjct: 103 VKREKSGTIVDARCRSLTAGFVKEKKQRGEDVDVCIYHDNLDLLEPHNLIPNGIWTLDNL 162
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G E CPYF AR+ + + +V+YSYHYLLDPKIA VS++L+ S+VVFDEAHNID
Sbjct: 163 LKYGEEHKQCPYFTARRMLQYCNVVIYSYHYLLDPKIAERVSRDLSSDSIVVFDEAHNID 222
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+++LS I ++ +A Q LE + EMKE D KL++EY +LVEGLR
Sbjct: 223 NVCIEALSTDITEESLRRATRGAQNLENRINEMKETDQQKLQDEYEKLVEGLRGNDDGTR 282
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D + +PVLP ++L+E VPGNIR AEHFV FL+RFIEYLKTR++V+QV+ E+P +FL
Sbjct: 283 EDSFMTSPVLPQDLLKEAVPGNIRRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLA- 341
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPLR+CA
Sbjct: 342 ----------------------HLK------------EYTF---------IEKKPLRWCA 358
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ +L + ATLV++Y KGF +I+EP+ VPNPVL+FC
Sbjct: 359 ERLTSLVRTLELTNIEDYHALQEVATFATLVATYEKGFLLILEPYESDTAEVPNPVLHFC 418
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFD+F+ V+ITSGT+SPL+MYPK+LNF V+ S+SMTLAR LP++
Sbjct: 419 CLDAAIAIKPVFDKFRNVIITSGTISPLEMYPKMLNFTTVVQESYSMTLARRSFLPLI 476
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 129/197 (65%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G IVD RC SLT+ V+++ + GE++ VC +++ D + + G++++
Sbjct: 102 SVKREKSGTIVDARCRSLTAGFVKEKKQRGEDVDVCIYHDNLDLLEPHNLIPNGIWTLDN 161
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L + G E CPYF AR+ + + +V+YSYHYLLDPKIA VS++L+ S+VVFDEAHNI
Sbjct: 162 LLKYGEEHKQCPYFTARRMLQYCNVVIYSYHYLLDPKIAERVSRDLSSDSIVVFDEAHNI 221
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC+++LS I ++ +A Q LE + EMKE D KL++EY +LVEGLR
Sbjct: 222 DNVCIEALSTDITEESLRRATRGAQNLENRINEMKETDQQKLQDEYEKLVEGLRGNDDGT 281
Query: 835 ETDVVLANPVLPDEILQ 851
D + +PVLP ++L+
Sbjct: 282 REDSFMTSPVLPQDLLK 298
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 75/121 (61%), Gaps = 14/121 (11%)
Query: 447 YMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKV 506
YM +LKK LDA G+C+LEMPSGTGKT +LLSLIVAY H + KL+YCSRT+ EIEK
Sbjct: 7 YMCDLKKTLDAGGNCVLEMPSGTGKTITLLSLIVAYQQ-HYAEHRKLIYCSRTMSEIEKA 65
Query: 507 VEELARLFDY---YIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIA 563
+ EL L + + + EE GL L+SRKNLC+H SV R +VD
Sbjct: 66 LVELKALMKFRAERLGYVEEFR--GLGLTSRKNLCLHP--------SVKREKSGTIVDAR 115
Query: 564 C 564
C
Sbjct: 116 C 116
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 76/123 (61%), Gaps = 10/123 (8%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR++L
Sbjct: 617 ARL-EFLRETYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGLMVLADRRFQK--KRNQL 673
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + L D TNLST+ AV ++R+L+ MAQPF +D G++ SL+ L K H +
Sbjct: 674 PKWIAQALLDADTNLSTDMAVSSARRFLKTMAQPFKAKDQEGISTWSLEDL--KRHQQKM 731
Query: 936 EEE 938
+EE
Sbjct: 732 DEE 734
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 51/70 (72%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W GI+D + K KL+
Sbjct: 490 FQVRNEPSVVRNYGNLLTEFAKITPDGMVVFFPSYLYMESIISMWQGMGILDEVWKYKLI 549
Query: 644 FIETQDALDS 653
+ET DA ++
Sbjct: 550 LVETPDAQET 559
>gi|164662899|ref|XP_001732571.1| hypothetical protein MGL_0346 [Malassezia globosa CBS 7966]
gi|159106474|gb|EDP45357.1| hypothetical protein MGL_0346 [Malassezia globosa CBS 7966]
Length = 837
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/420 (48%), Positives = 279/420 (66%), Gaps = 47/420 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VS+ER GK+VD RC +TS+ + R G ++ +CDF+E+ + + PGV++I
Sbjct: 140 VSQERKGKVVDARCRDMTSAWACEKGRQDPG-SVELCDFHEELGKLEPGHLVPPGVWTIE 198
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+L E ++ G+CPYF R+ + I++YS+HYLLDPK+A VSKE+++ ++VVFDEAHN
Sbjct: 199 ELIEYSKDKGICPYFAVRRMMPFCDIIIYSFHYLLDPKVAEQVSKEISKDAIVVFDEAHN 258
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + R ++ A + L + E+K+ DSA+L++EY RLVEGL+
Sbjct: 259 IDNVCIESLSIDLTRPILDNAYRCVNQLADKVDEVKKVDSARLQDEYVRLVEGLQQQSDD 318
Query: 179 RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL 238
RE + +ANPVLPD++LQE +PGNIR AEHFV FL+RF+EYLKTR+RV VV E+PA+FL
Sbjct: 319 REAESFMANPVLPDDLLQEAIPGNIRRAEHFVAFLRRFVEYLKTRMRVLHVVAETPASFL 378
Query: 239 KDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRF 298
+HLK TF IERKPLRF
Sbjct: 379 -----------------------QHLKE------------ITF---------IERKPLRF 394
Query: 299 CAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLY 358
CAERL L++TLE+T L ++S+L + ATLVS+Y KGF +I+EPF + TVPNP+ +
Sbjct: 395 CAERLRMLVQTLELTRLDEYSALQTVAFFATLVSTYDKGFLLILEPFETEQATVPNPIFH 454
Query: 359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
F CLD+SLAI PVF+RF +V+ITSGT+SPLDMYPK+L F V+ S++MTL R C LP+V
Sbjct: 455 FTCLDASLAIAPVFERFSSVIITSGTISPLDMYPKMLRFDTVVQESYTMTLTRQCFLPLV 514
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 137/199 (68%), Gaps = 3/199 (1%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSI 712
+VS+ER GK+VD RC +TS+ + R G ++ +CDF+E+ + + PGV++I
Sbjct: 139 TVSQERKGKVVDARCRDMTSAWACEKGRQDPG-SVELCDFHEELGKLEPGHLVPPGVWTI 197
Query: 713 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAH 772
+L E ++ G+CPYF R+ + I++YS+HYLLDPK+A VSKE+++ ++VVFDEAH
Sbjct: 198 EELIEYSKDKGICPYFAVRRMMPFCDIIIYSFHYLLDPKVAEQVSKEISKDAIVVFDEAH 257
Query: 773 NIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS 832
NIDNVC++SLS+ + R ++ A + L + E+K+ DSA+L++EY RLVEGL+
Sbjct: 258 NIDNVCIESLSIDLTRPILDNAYRCVNQLADKVDEVKKVDSARLQDEYVRLVEGLQQQSD 317
Query: 833 ARETDVVLANPVLPDEILQ 851
RE + +ANPVLPD++LQ
Sbjct: 318 DREAESFMANPVLPDDLLQ 336
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 89/138 (64%), Gaps = 22/138 (15%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQY+YMV+LK+ LD KGH +LEMPSGTGKT SLLSLI++Y
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYSYMVDLKRTLDVKGHGVLEMPSGTGKTVSLLSLIISYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN----------------EEI--- 524
+P KL+YCSRTV EIEK + EL RL Y K+N E+I
Sbjct: 61 RFYP-GSRKLVYCSRTVSEIEKALAELKRLMAYRAKYNTKKQLSDGIEPMDVDSEDIQGQ 119
Query: 525 --NMTGLVLSSRKNLCIH 540
++ L LSSRKN+C+H
Sbjct: 120 MEDILALGLSSRKNMCVH 137
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 80/125 (64%), Gaps = 6/125 (4%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C +P V+ + + + S FE R+D SV+RNYG +L++ + +PDG+V FF SYLY+ES
Sbjct: 509 CFLP-LVITRGSDQVAISSRFEVRNDPSVVRNYGNILIEYSRCIPDGIVAFFPSYLYMES 567
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHK 682
+VA+W+D GI+D + + KL+FIET DA ++ S++ E + D GR L S + R K
Sbjct: 568 IVAAWHDMGILDEVWRHKLVFIETPDAPET-SIALENYRRACDNGRGAILLSVA---RGK 623
Query: 683 AGENI 687
E I
Sbjct: 624 VSEGI 628
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 74/116 (63%), Gaps = 7/116 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD +E D + + + +L+GK+DYG+MIFADKRFARSDKR+KL
Sbjct: 655 ARL-EFLRDNFRIKENDFLTFDAMRHAAQCVGRVLRGKSDYGLMIFADKRFARSDKRAKL 713
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEH 931
PKWI +Y+ +NLST+ A+ SKR++R M QP+ G++L L+ + ++
Sbjct: 714 PKWIAQYIEPVFSNLSTDMAIVESKRFMRTMGQPYPAGKN-GISLWDLEDIERRQQ 768
>gi|388855689|emb|CCF50677.1| probable RAD3-DNA helicase/ATPase [Ustilago hordei]
Length = 847
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/420 (47%), Positives = 280/420 (66%), Gaps = 47/420 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VS+ER GK+VD RC +TSS + R G ++ +CDF+E+ + + PGV+++
Sbjct: 154 VSRERKGKVVDARCRDMTSSWACEKGRQDPG-SVELCDFHEELGNMEPGQLIPPGVWTLE 212
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
++KE R+ +CPYF R+ I I++YS+HYLLDPK+A VSKE+++ ++V+FDEAHN
Sbjct: 213 EVKEYARDKRICPYFAVRRMIPFVDIIIYSFHYLLDPKVAEQVSKEMSKDAIVIFDEAHN 272
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + R ++ A +I L + ++K+ D++KL++EYARLV+GL++
Sbjct: 273 IDNVCIESLSIDLTRPMLDSAYRSINQLSERVDQIKKTDASKLQDEYARLVQGLQEQGDQ 332
Query: 179 RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL 238
RE + +ANPVLPD++L E +PGNIR AEHFV FLKRF+EYLKTR+RV VV E+PA+FL
Sbjct: 333 REAETFMANPVLPDDLLSEAIPGNIRRAEHFVAFLKRFVEYLKTRMRVLHVVAETPASFL 392
Query: 239 KDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRF 298
+ LKDI+ IERKPLRF
Sbjct: 393 Q-----------------------------------------HLKDITY---IERKPLRF 408
Query: 299 CAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLY 358
CAERL L+ TLE+T L ++S+L + ATLV++Y KGF +I+EPF + TVPNP+ +
Sbjct: 409 CAERLRMLVGTLELTRLDEYSALQKVAAFATLVATYDKGFLLILEPFETENATVPNPIFH 468
Query: 359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
F CLD+SLAI PVF+RF +V+ITSGT+SPLDMYPK+L F +I S++MTL R C LP+V
Sbjct: 469 FTCLDASLAIAPVFERFSSVIITSGTISPLDMYPKMLKFDAIIQESYAMTLTRQCFLPLV 528
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 138/197 (70%), Gaps = 3/197 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
VS+ER GK+VD RC +TSS + R G ++ +CDF+E+ + + PGV+++
Sbjct: 154 VSRERKGKVVDARCRDMTSSWACEKGRQDPG-SVELCDFHEELGNMEPGQLIPPGVWTLE 212
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
++KE R+ +CPYF R+ I I++YS+HYLLDPK+A VSKE+++ ++V+FDEAHN
Sbjct: 213 EVKEYARDKRICPYFAVRRMIPFVDIIIYSFHYLLDPKVAEQVSKEMSKDAIVIFDEAHN 272
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC++SLS+ + R ++ A +I L + ++K+ D++KL++EYARLV+GL++
Sbjct: 273 IDNVCIESLSIDLTRPMLDSAYRSINQLSERVDQIKKTDASKLQDEYARLVQGLQEQGDQ 332
Query: 834 RETDVVLANPVLPDEIL 850
RE + +ANPVLPD++L
Sbjct: 333 REAETFMANPVLPDDLL 349
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/154 (51%), Positives = 90/154 (58%), Gaps = 36/154 (23%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID+LPV FPY IYPEQYAYM +LK+ LDA GHC+LEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFYIDELPVLFPYPRIYPEQYAYMADLKRTLDANGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN---------------------- 521
HP KL+YCSRTVPEIEK + EL RL +Y ++N
Sbjct: 61 QFHPAK-RKLIYCSRTVPEIEKALAELKRLMEYRARYNLKQGQQSQVLRNQAEQGNAPSE 119
Query: 522 EEINMTG-------------LVLSSRKNLCIHSE 542
I M G L LSSRKNLCIH +
Sbjct: 120 HHIQMEGRGKAGAQMQDILALGLSSRKNLCIHPD 153
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 79/124 (63%), Gaps = 10/124 (8%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GKTDYG+M+FADKRFAR+DKR+KL
Sbjct: 669 ARL-EFLRDNFRIRENDFLTFDAMRHAAQCVGRVLRGKTDYGLMVFADKRFARADKRNKL 727
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI +Y+ + +NLST+ AV SK ++R MAQP+ G +SL QL + E +A+
Sbjct: 728 PKWIAQYIKETHSNLSTDMAVVESKLFIRSMAQPYPE----GKNGVSLWQLSDIEQRQAK 783
Query: 936 EEEV 939
E E
Sbjct: 784 ERET 787
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 80/125 (64%), Gaps = 6/125 (4%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C +P V+ + + + S FE R+D +V+RNYG +L++ A VPDG+V FF SYLY+ES
Sbjct: 523 CFLP-LVITRGSDQVAISSRFEVRNDPAVVRNYGSILIEYAKCVPDGIVAFFPSYLYMES 581
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHK 682
+VA+W+D GI+D + K KL+FIET DA ++ S++ E + D GR L S + R K
Sbjct: 582 IVAAWHDMGILDQVWKYKLIFIETPDAPET-SIALENYRRACDNGRGAILLSVA---RGK 637
Query: 683 AGENI 687
E I
Sbjct: 638 VSEGI 642
>gi|347831219|emb|CCD46916.1| similar to DNA repair helicase RAD3 [Botryotinia fuckeliana]
Length = 770
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/419 (47%), Positives = 277/419 (66%), Gaps = 45/419 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++PVC +++ D + + GV+++ +
Sbjct: 92 VKREKSGAVVDARCRSLTAGFVKEKKERGEDVPVCIYHDNLDLLEPHNLIPNGVWTLDGI 151
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF +R+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNID
Sbjct: 152 MRYGEEHKQCPYFTSRRMMSFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 211
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I ++ +A LE + +++++DS KL++EYA+LVEGLR A AR
Sbjct: 212 NVCIESLSTDITDDSLRRATRGAMNLESRISDLRDSDSEKLKDEYAKLVEGLRGADEARA 271
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYL-KTRLRVQQVVQESPATFLK 239
D ++NP LPD++L+E VPGNIR AEHFV FLKRFIEYL KTR++V+QV+ E+PA+FL
Sbjct: 272 EDAFMSNPALPDDLLKEAVPGNIRRAEHFVVFLKRFIEYLKKTRMKVRQVISETPASFLA 331
Query: 240 DISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFC 299
+ + Y Y IE+KPLRFC
Sbjct: 332 HL----------KEYTY----------------------------------IEKKPLRFC 347
Query: 300 AERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYF 359
AERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EP+ VPNPVL+F
Sbjct: 348 AERLTSLVRTLELTNIEDYQPLQEVATFATLVATYEKGFLLILEPYESDTAEVPNPVLHF 407
Query: 360 CCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVF+RF +V+ITSGT+SPL+MYPK+LNF+ V+ S+ MTLAR LPM+
Sbjct: 408 TCLDAAIAIKPVFERFSSVIITSGTISPLEMYPKMLNFECVVQESYPMTLARRSFLPMI 466
Score = 195 bits (496), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 134/197 (68%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++PVC +++ D + + GV+++
Sbjct: 91 SVKREKSGAVVDARCRSLTAGFVKEKKERGEDVPVCIYHDNLDLLEPHNLIPNGVWTLDG 150
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ G E CPYF +R+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNI
Sbjct: 151 IMRYGEEHKQCPYFTSRRMMSFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNI 210
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I ++ +A LE + +++++DS KL++EYA+LVEGLR A AR
Sbjct: 211 DNVCIESLSTDITDDSLRRATRGAMNLESRISDLRDSDSEKLKDEYAKLVEGLRGADEAR 270
Query: 835 ETDVVLANPVLPDEILQ 851
D ++NP LPD++L+
Sbjct: 271 AEDAFMSNPALPDDLLK 287
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 71/115 (61%), Gaps = 14/115 (12%)
Query: 453 KALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512
+ LDA GHC+LEMPSGTGKT SLLSLIVAY +P + KL+YCSRT+ EIEK + EL
Sbjct: 2 RTLDAGGHCVLEMPSGTGKTISLLSLIVAYQQYYP-EHRKLIYCSRTMSEIEKALAELKA 60
Query: 513 LFDY---YIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
L Y + H E+ GL L+SRKNLC+H SV R +VD C
Sbjct: 61 LMKYRAEQLGHQEDFR--GLGLTSRKNLCLHP--------SVKREKSGAVVDARC 105
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 9/122 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYGIM+ AD+RF + KR++L
Sbjct: 607 ARL-EFLRETYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFLK--KRTQL 663
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + D+ NLST+ AV +K++LR MAQPF +D G++ SL Q LEK +
Sbjct: 664 PKWINQAILDSEVNLSTDMAVGSAKKFLRNMAQPFKAKDQEGISTWSL-QDLEKFKEKQY 722
Query: 936 EE 937
EE
Sbjct: 723 EE 724
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 54/74 (72%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R++ +V+RNYG LL +++ + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 476 ISSGFQVRNEPAVVRNYGNLLTEMSKLTPDGMVVFFPSYLYMESIISMWQGMGILDEVWK 535
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 536 YKLILVETPDAQET 549
>gi|452840050|gb|EME41988.1| hypothetical protein DOTSEDRAFT_72929 [Dothistroma septosporum
NZE10]
Length = 798
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/418 (46%), Positives = 276/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C +++ D + + PGV+++ +
Sbjct: 120 VRREKSGSVVDARCRSLTAGFVKEKKERGEDVDLCIYHDNLDLLEPHNLIPPGVWTLDGM 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF AR+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNID
Sbjct: 180 LQYGEQHKQCPYFTARRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA LE + EMK+ D+ KL+ EYA+LVEGLR+A AR+
Sbjct: 240 NVCIESLSIDLTEDSLRKAARGASNLEQKITEMKDTDAEKLQNEYAKLVEGLREADQARD 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
++NP LPD++L+E VPGNIR AEHF FLKRFIEYLKTR++V V+ E+P +FL
Sbjct: 300 EGAFMSNPALPDDLLKEAVPGNIRRAEHFTAFLKRFIEYLKTRMKVLHVISETPPSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+HLK TF IE+KPLRFCA
Sbjct: 358 ---------------------QHLKE------------LTF---------IEKKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y GF +I+EP+ + TV NP+L+F
Sbjct: 376 ERLTSLVRTLELTNIEDYQPLQEVATFATLVATYDTGFLLILEPYESDSATVANPILHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGT+SPL+MYPK+L F+ V+ S++MTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLGFEAVVQESYAMTLARRSFLPMI 493
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 135/197 (68%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C +++ D + + PGV+++
Sbjct: 119 SVRREKSGSVVDARCRSLTAGFVKEKKERGEDVDLCIYHDNLDLLEPHNLIPPGVWTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ + G + CPYF AR+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNI
Sbjct: 179 MLQYGEQHKQCPYFTARRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA LE + EMK+ D+ KL+ EYA+LVEGLR+A AR
Sbjct: 239 DNVCIESLSIDLTEDSLRKAARGASNLEQKITEMKDTDAEKLQNEYAKLVEGLREADQAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ ++NP LPD++L+
Sbjct: 299 DEGAFMSNPALPDDLLK 315
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/142 (54%), Positives = 92/142 (64%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M I+DLPV FPY IYPEQYAYM +LK+ LDA GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFYIEDLPVLFPYPRIYPEQYAYMCDLKRTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRT+ EIEK + EL L Y E+ + GL L+SRKNLC+H
Sbjct: 61 QFYP-EARKLIYCSRTMSEIEKALAELKALMKYRADQLGEVEDFRGLGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 -------SVRREKSGSVVDARC 133
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 54/74 (72%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D +V++NYGQLL+ + + PDG+V FF SYLY+ESV++ W + G +D + K
Sbjct: 503 ISSNFQRRNDPNVVKNYGQLLIKFSKLTPDGIVVFFPSYLYMESVISMWQNMGTLDEVWK 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ ++
Sbjct: 563 SKLILVETPDSQET 576
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYGIM+ AD RF + ++ +LPKWI L D +N+S ++A +K++L+QM++
Sbjct: 666 VLRGKDDYGIMVMADDRFKK--RKEQLPKWIGSALMDADSNMSVDQAEAAAKKFLKQMSK 723
Query: 909 PFTREDMLGVALLSLDQLL-EKEHARAEEEEVPR 941
PF G++ S + L+ K+ A AE E R
Sbjct: 724 PFPAHVQDGISTWSYEDLMAHKQKAEAEVERQER 757
>gi|452981603|gb|EME81363.1| hypothetical protein MYCFIDRAFT_189512 [Pseudocercospora fijiensis
CIRAD86]
Length = 776
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/418 (46%), Positives = 275/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT++ V+++ GE++ VC +++ D + + PGV+++ +
Sbjct: 120 VKQEKSGSVVDARCRSLTAAFVKEKKDRGEDVDVCIYHDNLDLLEPHNLIPPGVWTLDGM 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G + CPYF AR+ + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNID
Sbjct: 180 LRYGEQQKQCPYFTARRMMPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA LE + MK+ D+ KL+ EYA+LVEGLR+A +AR+
Sbjct: 240 NVCIESLSIDLTEDSLRKAARGAANLEREITTMKQTDADKLQNEYAKLVEGLREADAARD 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
++NP LPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V V+ E+P +FL
Sbjct: 300 EGAFMSNPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLHVISETPPSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+HLK TF IERKPLRFCA
Sbjct: 358 ---------------------QHLKE------------LTF---------IERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATL ++Y GF +I+EP+ TVPNP+L+F
Sbjct: 376 ERLTSLVRTLELTNIEDYQPLQEVATFATLAATYDTGFLLILEPYESDTATVPNPILHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGT+SPL+MYPK+L F+ V+ S++MTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLGFECVVQESYTMTLARKSFLPMI 493
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 134/197 (68%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT++ V+++ GE++ VC +++ D + + PGV+++
Sbjct: 119 SVKQEKSGSVVDARCRSLTAAFVKEKKDRGEDVDVCIYHDNLDLLEPHNLIPPGVWTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ G + CPYF AR+ + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNI
Sbjct: 179 MLRYGEQQKQCPYFTARRMMPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA LE + MK+ D+ KL+ EYA+LVEGLR+A +AR
Sbjct: 239 DNVCIESLSIDLTEDSLRKAARGAANLEREITTMKQTDADKLQNEYAKLVEGLREADAAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ ++NP LPD++L+
Sbjct: 299 DEGAFMSNPALPDDLLK 315
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 87/132 (65%), Gaps = 6/132 (4%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M I DLPV FPY IYPEQY YM LK+ LD+ GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFYIGDLPVLFPYPRIYPEQYEYMCALKQTLDSGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY---YIKHNEEINMTGLVLSSRKNLCIH 540
+P + KL+YCSRT+ EIEK + EL L Y + H E+ GL L+SRKNLC+H
Sbjct: 61 QHYP-EHRKLIYCSRTMSEIEKALAELKALMKYRSDQLGHAEDFR--GLGLTSRKNLCLH 117
Query: 541 SEFETRDDISVI 552
+ SV+
Sbjct: 118 PSVKQEKSGSVV 129
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 55/74 (74%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+TR+D + +RNYG LL++ + + PDG+V FF SYLY+ESV++ W GI+D++ K
Sbjct: 503 ISSGFQTRNDPANVRNYGNLLIEFSKLTPDGIVVFFPSYLYMESVISMWQTMGILDSVWK 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ ++
Sbjct: 563 SKLILVETPDSQET 576
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 61/87 (70%), Gaps = 5/87 (5%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYG+M+ ADKRFA+ KR++LPKWI L D+ TN+S ++AV +K++L+QM+Q
Sbjct: 666 VLRGKDDYGVMVMADKRFAK--KRNQLPKWINNQLMDSDTNMSVDQAVAAAKKFLKQMSQ 723
Query: 909 PFTREDMLGVALLSLDQLL---EKEHA 932
PF G++ S + L+ +K HA
Sbjct: 724 PFPISMQEGISTWSYEDLVAHQQKVHA 750
>gi|398396458|ref|XP_003851687.1| DNA repair helicase [Zymoseptoria tritici IPO323]
gi|339471567|gb|EGP86663.1| hypothetical protein MYCGRDRAFT_43883 [Zymoseptoria tritici IPO323]
Length = 801
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/418 (46%), Positives = 274/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C +++ D + + PGV+++ +
Sbjct: 120 VKREKSGSVVDSRCRSLTAGFVKEKKERGEDVDLCIYHDNLDLLEPHNLIPPGVWTLDGM 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G + CPYF AR+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNID
Sbjct: 180 LRYGEQQKQCPYFTARRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA LE + EMK+ D+ KL+ EYA+LVEGLR+A AR+
Sbjct: 240 NVCIESLSIDLTEDSLRKAARGASNLERKITEMKDTDAEKLQNEYAKLVEGLREADEARD 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
++NP LPD++L+E +PGNIR AEHF FLKRFIEYLKTR++V V+ E+P +FL
Sbjct: 300 EGAFMSNPALPDDLLKEAIPGNIRRAEHFTAFLKRFIEYLKTRMKVLHVISETPPSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+HLK TF IE+KPLRFCA
Sbjct: 358 ---------------------QHLKE------------LTF---------IEKKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE++N+ D+ L + ATLV++Y GF +I+EP+ TVPNP+L+F
Sbjct: 376 ERLTSLVRTLELSNIEDYQPLQEVATFATLVATYDTGFLLILEPYESDTATVPNPILHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGT+SPL+MYPK+L F V+ S++MTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLGFTAVVQESYAMTLARRSFLPMI 493
Score = 196 bits (497), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 134/197 (68%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C +++ D + + PGV+++
Sbjct: 119 SVKREKSGSVVDSRCRSLTAGFVKEKKERGEDVDLCIYHDNLDLLEPHNLIPPGVWTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ G + CPYF AR+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNI
Sbjct: 179 MLRYGEQQKQCPYFTARRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA LE + EMK+ D+ KL+ EYA+LVEGLR+A AR
Sbjct: 239 DNVCIESLSIDLTEDSLRKAARGASNLERKITEMKDTDAEKLQNEYAKLVEGLREADEAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
+ ++NP LPD++L+
Sbjct: 299 DEGAFMSNPALPDDLLK 315
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 89/130 (68%), Gaps = 2/130 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M I+DLPV FPY IYPEQYAYM +LK+ LD+ GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKFFIEDLPVLFPYPRIYPEQYAYMCDLKRTLDSGGHCVLEMPSGTGKTVSLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRT+ EIEK + EL L Y E+ + GL L+SRKNLC+H
Sbjct: 61 QFYP-EHRKLIYCSRTMSEIEKALAELKALMKYRADQLGEVEDFRGLGLTSRKNLCLHPS 119
Query: 543 FETRDDISVI 552
+ SV+
Sbjct: 120 VKREKSGSVV 129
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 52/74 (70%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+TR D IRNYG L+++ + + PDG+V FF SYLY+ESV++ W GI+D + K
Sbjct: 503 MSSGFQTRSDPGNIRNYGALIIEFSKLTPDGIVVFFPSYLYMESVISMWQGMGILDQVWK 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ ++
Sbjct: 563 SKLILVETPDSQET 576
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 79/127 (62%), Gaps = 11/127 (8%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ ADKRFA+ KR++L
Sbjct: 634 ARL-EFLRETYRIRENDFLSFDAMRHCAQCLGRVLRGKDDYGVMVMADKRFAK--KRTQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLE---KEHA 932
PKWI + ++ N+S ++AV +K++L+ M++PF + G++ S + L+E K+HA
Sbjct: 691 PKWIGSAMMESDANMSVDQAVAAAKKFLKNMSKPFPAKLQDGISTWSYEDLMEHQSKQHA 750
Query: 933 RAEEEEV 939
+ + +E+
Sbjct: 751 QEKLQEL 757
>gi|302418904|ref|XP_003007283.1| DNA repair helicase RAD3 [Verticillium albo-atrum VaMs.102]
gi|261354885|gb|EEY17313.1| DNA repair helicase RAD3 [Verticillium albo-atrum VaMs.102]
Length = 756
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/425 (47%), Positives = 272/425 (64%), Gaps = 51/425 (12%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ GEN+ VC +++ D + + GV++ L
Sbjct: 79 VKREKSGSVVDARCRSLTAGFVKEKKDKGENVDVCVYHDNLDLLEPHNLIPNGVWTFDGL 138
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G + CPYF +R+ + + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNID
Sbjct: 139 LRYGEQHKQCPYFTSRRMMQYCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 198
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I ++ KA Q L+ + EMK+ D +L+ EY +LVEGLRDA AR+
Sbjct: 199 NVCIESLSTDITEDSLRKAARGAQNLDRKIAEMKQTDQEQLQNEYLKLVEGLRDAGEARQ 258
Query: 181 TDVVLANP-------VLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQES 233
D ++NP LPD++L E VPGNIR AEHFV FLKRFIEYLKTR++V+ + E+
Sbjct: 259 EDAFMSNPARLTDGKALPDDLLNEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVRNTISET 318
Query: 234 PATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIER 293
P +FL HLK TF IE+
Sbjct: 319 PPSFLA-----------------------HLKE------------FTF---------IEK 334
Query: 294 KPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVP 353
KPL+FCAERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EPF +A VP
Sbjct: 335 KPLKFCAERLTSLVRTLELTNIEDYQPLQEVATFATLVATYEKGFLLILEPFESEAAEVP 394
Query: 354 NPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPC 413
NPVL+F CLD+++AIKPVFDRF +V+ITSGT+SPL+MYPK+L F V+ S+SMTLAR
Sbjct: 395 NPVLHFTCLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLGFSTVVQESYSMTLARRS 454
Query: 414 LLPMV 418
LPM+
Sbjct: 455 FLPMI 459
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 130/204 (63%), Gaps = 7/204 (3%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ GEN+ VC +++ D + + GV++
Sbjct: 78 SVKREKSGSVVDARCRSLTAGFVKEKKDKGENVDVCVYHDNLDLLEPHNLIPNGVWTFDG 137
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L G + CPYF +R+ + + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNI
Sbjct: 138 LLRYGEQHKQCPYFTSRRMMQYCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNI 197
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I ++ KA Q L+ + EMK+ D +L+ EY +LVEGLRDA AR
Sbjct: 198 DNVCIESLSTDITEDSLRKAARGAQNLDRKIAEMKQTDQEQLQNEYLKLVEGLRDAGEAR 257
Query: 835 ETDVVLANP-------VLPDEILQ 851
+ D ++NP LPD++L
Sbjct: 258 QEDAFMSNPARLTDGKALPDDLLN 281
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 70/112 (62%), Gaps = 8/112 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR +L
Sbjct: 600 ARL-EFLRETYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFQK--KRVQL 656
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLL 927
PKWI + L D TNLST+ AV ++R+L+QMAQPF +D GV+ S + L+
Sbjct: 657 PKWINQGLLDADTNLSTDMAVSSARRFLKQMAQPFRAKDQEGVSTWSYEDLM 708
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 60/101 (59%), Gaps = 10/101 (9%)
Query: 465 MPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEE 523
MPSGTGKT SLLSLIVAY +P + KL+YCSRT+ EIEK + EL L Y + +E
Sbjct: 1 MPSGTGKTVSLLSLIVAYQQHYP-EHRKLIYCSRTMSEIEKALAELRELMKYRTEQLGQE 59
Query: 524 INMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
GL L+SRKNLC+H SV R +VD C
Sbjct: 60 EEFRGLGLTSRKNLCLHP--------SVKREKSGSVVDARC 92
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 51/70 (72%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W GI+D + K KL+
Sbjct: 473 FQVRNEPSVVRNYGSLLTEFAKITPDGMVVFFPSYLYMESIISMWQGMGILDEVWKYKLI 532
Query: 644 FIETQDALDS 653
+ET DA ++
Sbjct: 533 LVETPDAQET 542
>gi|392595870|gb|EIW85193.1| DNA repair helicase [Coniophora puteana RWD-64-598 SS2]
Length = 787
Score = 404 bits (1039), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/420 (48%), Positives = 284/420 (67%), Gaps = 48/420 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
V+KE+ GK+VD RC LT+S+V + R G ++ +C+++E + + ++PGV+++
Sbjct: 126 VAKEKKGKVVDARCRDLTNSAVCAKGREDPG-SVELCEWHENLGKLEPGSLISPGVHTLA 184
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+ E GR G CPYF R+ + +V+YS+HYLLDPK+A VSKE+++ ++VVFDEAHN
Sbjct: 185 DVLEHGRANGTCPYFTVRRMMPFVDVVIYSFHYLLDPKVAEQVSKEMSKDAIVVFDEAHN 244
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + R ++ A ++ L ++E+K D+AKL++EYARLVEGL++ +A
Sbjct: 245 IDNVCIESLSIDLTRPMLDSAARSVVKLGDKIEEIKRTDAAKLQDEYARLVEGLQEP-AA 303
Query: 179 RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL 238
E D ++NPVLP+++L E +PGNIR AEHFV FLKRF+EYLKTR+RV VV E+P +FL
Sbjct: 304 PEEDSFMSNPVLPEDLLSEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAETPLSFL 363
Query: 239 KDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRF 298
+ LKDI+ IER+PLRF
Sbjct: 364 QH-----------------------------------------LKDITY---IERRPLRF 379
Query: 299 CAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLY 358
CAERL S++RTLE++ L ++SSL + ATLV++Y KGF +I+EPF + TVPNP+ +
Sbjct: 380 CAERLQSMIRTLELSRLDEYSSLQKVASFATLVATYEKGFLLILEPFETDSATVPNPMFH 439
Query: 359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
F CLD SLAIKPVF+RF +VVITSGT+SPLDMYPK+L F PV+ S+SMTLAR LP+V
Sbjct: 440 FTCLDPSLAIKPVFERFSSVVITSGTISPLDMYPKMLQFTPVVQESYSMTLARNTFLPLV 499
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 140/197 (71%), Gaps = 4/197 (2%)
Query: 656 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
V+KE+ GK+VD RC LT+S+V + R G ++ +C+++E + + ++PGV+++
Sbjct: 126 VAKEKKGKVVDARCRDLTNSAVCAKGREDPG-SVELCEWHENLGKLEPGSLISPGVHTLA 184
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
+ E GR G CPYF R+ + +V+YS+HYLLDPK+A VSKE+++ ++VVFDEAHN
Sbjct: 185 DVLEHGRANGTCPYFTVRRMMPFVDVVIYSFHYLLDPKVAEQVSKEMSKDAIVVFDEAHN 244
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC++SLS+ + R ++ A ++ L ++E+K D+AKL++EYARLVEGL++ +A
Sbjct: 245 IDNVCIESLSIDLTRPMLDSAARSVVKLGDKIEEIKRTDAAKLQDEYARLVEGLQEP-AA 303
Query: 834 RETDVVLANPVLPDEIL 850
E D ++NPVLP+++L
Sbjct: 304 PEEDSFMSNPVLPEDLL 320
Score = 155 bits (392), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 78/126 (61%), Positives = 92/126 (73%), Gaps = 8/126 (6%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID+LP+ FPY+ IYPEQYAYM +LK+ LDA GHC+LEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFFIDNLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK-------HNEEINMTGLVLSSRKN 536
+P + KL+YCSRTVPEIEK + EL RL +Y IK +E N GL L+SRKN
Sbjct: 61 QFYP-NKRKLIYCSRTVPEIEKALAELKRLMEYRIKCAETTEQKEKEENFRGLGLTSRKN 119
Query: 537 LCIHSE 542
LCIH E
Sbjct: 120 LCIHPE 125
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 80/118 (67%), Gaps = 8/118 (6%)
Query: 821 ARLVEGLRDAQSARET-----DVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRDA RE+ D + +L+GKTD+G+M+FADKRFAR+DKR+KL
Sbjct: 640 ARL-EYLRDAYRIRESEFLGFDAMRNAAQCVGRVLRGKTDWGLMVFADKRFARADKRAKL 698
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHAR 933
P+WI +Y+T+ +NLST+ A+ LSK ++R ++Q E+ GV+L +++ +EK A+
Sbjct: 699 PRWINQYITEVASNLSTDMAITLSKLFMRTISQN-PHENQAGVSLWTVED-IEKAQAK 754
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 71/109 (65%), Gaps = 5/109 (4%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +L++ + +VPDG+V FF SYLY+ES+VA+W D GI+ + K
Sbjct: 509 ISSRFEVRNDPAVVRNFGSILIEYSKIVPDGIVAFFPSYLYMESIVAAWNDMGILTEVWK 568
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENI 687
KL+F+ET DA + S++ E + D GR L S + R K E I
Sbjct: 569 NKLIFVETPDA-NETSIALENYRRACDNGRGAVLLSVA---RGKVSEGI 613
>gi|322707662|gb|EFY99240.1| DNA repair helicase RAD3 [Metarhizium anisopliae ARSEF 23]
Length = 716
Score = 404 bits (1039), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/418 (46%), Positives = 273/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ GEN+ VC +++ D + + GV++ +
Sbjct: 45 VKREKSGSVVDARCRSLTAGFVKEKKDRGENVAVCVYHDNLDLLEPHNLIPNGVWTFDGI 104
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF AR+ + + +V++SYHYLLDPKIA VS++ ++ +VVFDEAHNID
Sbjct: 105 LRYGEEHKQCPYFTARRMMQYCNVVIFSYHYLLDPKIAERVSRDFSKDCIVVFDEAHNID 164
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+++LS I ++ +A Q LE + EM++ D +L+ EY +LV+GLR+A AR+
Sbjct: 165 NVCIEALSTDITEDSLRRASRGAQNLEHKITEMRDTDQEQLQNEYQKLVQGLREADEARQ 224
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANP LP+++L+E VPGNIR AEHFV FLKRFIEYLKTR++V+QV+ E+P +FL
Sbjct: 225 EDAFMANPALPEDLLREAVPGNIRRAEHFVAFLKRFIEYLKTRMKVRQVISETPPSFLA- 283
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPLRFCA
Sbjct: 284 ----------------------HLKEH------------TF---------IEKKPLRFCA 300
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EPF VPNP+L+F
Sbjct: 301 ERLTSLVRTLELTNIEDYQPLQEVATFATLVATYEKGFLLILEPFESDTAEVPNPILHFT 360
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AI+PVF+RF +V+ITSGT+SPL+MYPK+L+F VI S+SMTLAR LPM+
Sbjct: 361 CLDAAIAIRPVFERFYSVIITSGTISPLEMYPKMLDFSTVIQESYSMTLARRSFLPMI 418
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 130/197 (65%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ GEN+ VC +++ D + + GV++
Sbjct: 44 SVKREKSGSVVDARCRSLTAGFVKEKKDRGENVAVCVYHDNLDLLEPHNLIPNGVWTFDG 103
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ G E CPYF AR+ + + +V++SYHYLLDPKIA VS++ ++ +VVFDEAHNI
Sbjct: 104 ILRYGEEHKQCPYFTARRMMQYCNVVIFSYHYLLDPKIAERVSRDFSKDCIVVFDEAHNI 163
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC+++LS I ++ +A Q LE + EM++ D +L+ EY +LV+GLR+A AR
Sbjct: 164 DNVCIEALSTDITEDSLRRASRGAQNLEHKITEMRDTDQEQLQNEYQKLVQGLREADEAR 223
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANP LP+++L+
Sbjct: 224 QEDAFMANPALPEDLLR 240
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 54/74 (72%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ + F+ R++ SV+RNYG LL++ A + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 428 ISTSFQVRNEPSVVRNYGTLLIEFAKITPDGLVVFFPSYLYMESIISMWQGMGILDEVWK 487
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 488 YKLILVETPDAQET 501
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%), Gaps = 2/78 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYGIM+ AD+RF + KR +LPKWI + L D TNLST+ AV ++R+LR MAQ
Sbjct: 591 VLRGKDDYGIMVLADRRFQK--KRVQLPKWINQGLLDVDTNLSTDMAVSSARRFLRTMAQ 648
Query: 909 PFTREDMLGVALLSLDQL 926
PF +D G++ + L
Sbjct: 649 PFHAKDQDGISTWGYEDL 666
>gi|322692960|gb|EFY84841.1| DNA repair helicase RAD3 [Metarhizium acridum CQMa 102]
Length = 716
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/418 (46%), Positives = 272/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ GEN+ VC +++ D + + GV++ +
Sbjct: 45 VKREKSGSVVDARCRSLTAGFVKEKKDRGENVDVCIYHDNLDLLEPHNLIPNGVWTFDGI 104
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF AR+ + + +V++SYHYLLDPKIA VS++ ++ +VVFDEAHNID
Sbjct: 105 LRHGEEHKQCPYFTARRMMQYCNVVIFSYHYLLDPKIAERVSRDFSKDCIVVFDEAHNID 164
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+++LS I ++ +A Q LE + EM++ D +L+ EY +LV+GLR+A AR+
Sbjct: 165 NVCIEALSTDITEDSLRRASRGAQNLEHKITEMRDTDQEQLQNEYQKLVQGLREADEARQ 224
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANP LP+++L+E VPGNIR AEHFV FLKRFIEYLKTR++V+QV+ E+P +FL
Sbjct: 225 EDAFMANPTLPEDLLREAVPGNIRRAEHFVAFLKRFIEYLKTRMKVRQVISETPPSFLA- 283
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPLRFCA
Sbjct: 284 ----------------------HLKEH------------TF---------IEKKPLRFCA 300
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I EPF VPNP+L+F
Sbjct: 301 ERLTSLVRTLELTNVEDYQPLQEVATFATLVATYEKGFLLIFEPFESDTAEVPNPILHFT 360
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AI+PVF+RF +V+ITSGT+SPL+MYPK+L+F VI S+SMTLAR LPM+
Sbjct: 361 CLDAAIAIRPVFERFYSVIITSGTISPLEMYPKMLDFSTVIQESYSMTLARRSFLPMI 418
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 130/197 (65%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ GEN+ VC +++ D + + GV++
Sbjct: 44 SVKREKSGSVVDARCRSLTAGFVKEKKDRGENVDVCIYHDNLDLLEPHNLIPNGVWTFDG 103
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ G E CPYF AR+ + + +V++SYHYLLDPKIA VS++ ++ +VVFDEAHNI
Sbjct: 104 ILRHGEEHKQCPYFTARRMMQYCNVVIFSYHYLLDPKIAERVSRDFSKDCIVVFDEAHNI 163
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC+++LS I ++ +A Q LE + EM++ D +L+ EY +LV+GLR+A AR
Sbjct: 164 DNVCIEALSTDITEDSLRRASRGAQNLEHKITEMRDTDQEQLQNEYQKLVQGLREADEAR 223
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANP LP+++L+
Sbjct: 224 QEDAFMANPTLPEDLLR 240
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 54/74 (72%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ + F+ R++ SV+RNYG LL++ A + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 428 ISTSFQVRNEPSVVRNYGTLLIEFAKITPDGLVVFFPSYLYMESIISMWQGMGILDEVWK 487
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 488 YKLILVETPDAQET 501
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 55/78 (70%), Gaps = 2/78 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYGIM+ AD+RF + KR++LPKWI + L D TNLST+ AV ++R+LR MAQ
Sbjct: 591 VLRGKDDYGIMVLADRRFQK--KRAQLPKWINQGLLDVDTNLSTDMAVSSARRFLRTMAQ 648
Query: 909 PFTREDMLGVALLSLDQL 926
PF +D G++ + L
Sbjct: 649 PFHAKDQDGISTWGYEDL 666
>gi|393236508|gb|EJD44056.1| DNA repair helicase [Auricularia delicata TFB-10046 SS5]
Length = 810
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/419 (46%), Positives = 279/419 (66%), Gaps = 45/419 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITK 59
V+KE+ G +VD RC LT ++ ++ +A ++PVC +++K + + G++++
Sbjct: 126 VAKEKKGWVVDARCRDLTCTANCEKARANPGSVPVCTWHDKLGEMEPGNLIPQGIWTLAD 185
Query: 60 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
++ G+E G+CPYF R+ + +++YS+HYLLDPK+A VSKEL++ ++VVFDEAHNI
Sbjct: 186 VQAYGQEKGVCPYFTIRRMMPFVDVIIYSFHYLLDPKVAEQVSKELSKDAIVVFDEAHNI 245
Query: 120 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 179
DNVC++SLS+ + R ++ A ++ L ++E+K+ D++KL++EYA+LVEGL++A AR
Sbjct: 246 DNVCIESLSIDLTRPMLDSAARSVTRLGDQIEEIKKTDASKLQDEYAKLVEGLQEAADAR 305
Query: 180 ETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLK 239
+ D +ANP+LPD++L E VPGNIR AEHFV FLKRF+EYLKTR+RV VV E+P +FL+
Sbjct: 306 DEDAFIANPILPDDLLTEAVPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAETPLSFLQ 365
Query: 240 DISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFC 299
LKDI+ IER+PLRFC
Sbjct: 366 H-----------------------------------------LKDIT---FIERRPLRFC 381
Query: 300 AERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYF 359
AERL SL+RTLE+T L + SL + ATLV++Y KGF +I+EPF TVPNPV +F
Sbjct: 382 AERLQSLVRTLELTRLDEMRSLQKVASFATLVATYEKGFLLILEPFETDNATVPNPVFHF 441
Query: 360 CCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD SLAIKP+F+RF +VVITSGT+SPLDMYPK+L F PV+ ++ MTL R LP+V
Sbjct: 442 TCLDPSLAIKPIFERFSSVVITSGTISPLDMYPKMLQFTPVVQETYPMTLTRDAFLPLV 500
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 140/196 (71%), Gaps = 1/196 (0%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITK 714
V+KE+ G +VD RC LT ++ ++ +A ++PVC +++K + + G++++
Sbjct: 126 VAKEKKGWVVDARCRDLTCTANCEKARANPGSVPVCTWHDKLGEMEPGNLIPQGIWTLAD 185
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
++ G+E G+CPYF R+ + +++YS+HYLLDPK+A VSKEL++ ++VVFDEAHNI
Sbjct: 186 VQAYGQEKGVCPYFTIRRMMPFVDVIIYSFHYLLDPKVAEQVSKELSKDAIVVFDEAHNI 245
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + R ++ A ++ L ++E+K+ D++KL++EYA+LVEGL++A AR
Sbjct: 246 DNVCIESLSIDLTRPMLDSAARSVTRLGDQIEEIKKTDASKLQDEYAKLVEGLQEAADAR 305
Query: 835 ETDVVLANPVLPDEIL 850
+ D +ANP+LPD++L
Sbjct: 306 DEDAFIANPILPDDLL 321
Score = 149 bits (375), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/126 (59%), Positives = 88/126 (69%), Gaps = 8/126 (6%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID+LP+ FPY+ IYPEQY+YM +LK+ LDA GHC+LEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFFIDNLPIIFPYDRIYPEQYSYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK-------HNEEINMTGLVLSSRKN 536
P KL+YCSRTVPEIEK + EL RL Y I+ E TGL L+SRKN
Sbjct: 61 QFFPTK-RKLIYCSRTVPEIEKALAELKRLMAYRIECAETEEERERERAFTGLGLTSRKN 119
Query: 537 LCIHSE 542
LC+H E
Sbjct: 120 LCLHPE 125
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 82/126 (65%), Gaps = 10/126 (7%)
Query: 821 ARLVEGLRDAQSARET-----DVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRDA RE+ D + +L+GKTD+G+M+FADKRFAR+DKR+KL
Sbjct: 641 ARL-EYLRDAYRIRESEFLGFDAMRNAAQCVGRVLRGKTDWGLMVFADKRFARADKRAKL 699
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL---LEKEHA 932
P+WI +Y+TD +NLST+ A+ LSK ++R ++Q E+ GV+L +L+ + EK+ A
Sbjct: 700 PRWINQYITDTASNLSTDMAIVLSKLFMRSISQN-VNENQTGVSLWTLEDVQKAQEKQKA 758
Query: 933 RAEEEE 938
E E
Sbjct: 759 MMAEAE 764
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 69/108 (63%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +L++ + +VPDG+V FF SYLY+ES+VA+W D GI++ + K
Sbjct: 510 VSSRFEVRNDPAVVRNFGSILIEYSKIVPDGIVAFFPSYLYMESIVAAWNDMGILNEVWK 569
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+F+ET DA ++ + +GR L S + R K E I
Sbjct: 570 NKLIFVETPDANETSIALENYRRACNNGRGAVLLSVA---RGKVSEGI 614
>gi|430813060|emb|CCJ29560.1| unnamed protein product [Pneumocystis jirovecii]
Length = 774
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/418 (47%), Positives = 274/418 (65%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
+ E+ G IVD RC LT+S VR++ KAGE + +C +YE + + + GV++ T L
Sbjct: 120 IKHEKKGNIVDARCRGLTASFVREKKKAGEKVNLCLYYENLNFLDFCDLIPYGVFTFTDL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
E G + CPYF+AR+ I +VVYSYHYLLDPKI+ +S+EL++ +VVFDEAHNID
Sbjct: 180 IEYGEKNQQCPYFIARRMIPFCNVVVYSYHYLLDPKISEFISRELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLSV I ++++A +I +LE + MK+ ++ KL+ EY +LVEGLR+ + +E
Sbjct: 240 NVCIESLSVDITEDSLKRASHSINSLETKIANMKKNNAEKLQMEYRKLVEGLREIEKIKE 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D+ + N +L D++L+E +PGNIR AEHFV FLKRF+EY+KTR++V V+ E+P +FL
Sbjct: 300 NDIFITNSILSDDLLKEAIPGNIRKAEHFVAFLKRFVEYMKTRMKVLHVIAETPLSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+HLK IE KPLRFCA
Sbjct: 358 ---------------------QHLK---------------------ELTYIESKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE++++ D+ L IT ATLVS+Y KGF II+EPF TVPNPV +F
Sbjct: 376 ERLNSLIRTLELSDIEDYQYLQEITDFATLVSTYEKGFIIILEPFETDTATVPNPVFHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+S+AIKP+F +F++V+ITSGT+SPLDMYPKIL F VI S++++LAR LPM+
Sbjct: 436 CLDASIAIKPIFAKFKSVIITSGTISPLDMYPKILQFNAVIQESYNISLARNSFLPMI 493
Score = 192 bits (487), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 135/197 (68%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
S+ E+ G IVD RC LT+S VR++ KAGE + +C +YE + + + GV++ T
Sbjct: 119 SIKHEKKGNIVDARCRGLTASFVREKKKAGEKVNLCLYYENLNFLDFCDLIPYGVFTFTD 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L E G + CPYF+AR+ I +VVYSYHYLLDPKI+ +S+EL++ +VVFDEAHNI
Sbjct: 179 LIEYGEKNQQCPYFIARRMIPFCNVVVYSYHYLLDPKISEFISRELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLSV I ++++A +I +LE + MK+ ++ KL+ EY +LVEGLR+ + +
Sbjct: 239 DNVCIESLSVDITEDSLKRASHSINSLETKIANMKKNNAEKLQMEYRKLVEGLREIEKIK 298
Query: 835 ETDVVLANPVLPDEILQ 851
E D+ + N +L D++L+
Sbjct: 299 ENDIFITNSILSDDLLK 315
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/118 (60%), Positives = 84/118 (71%), Gaps = 2/118 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM LKK LDA GHC+LEMPSGTGKT SLLSLI++Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCHLKKTLDAGGHCVLEMPSGTGKTVSLLSLIISYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN-MTGLVLSSRKNLCIH 540
KL+YCSRT+ EIEK++ EL L ++ K +EE + L L+SRKNLC+H
Sbjct: 61 KVFEQH-RKLVYCSRTMSEIEKILVELKNLIEFRKKISEENSKFRALGLTSRKNLCLH 117
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 79/122 (64%), Gaps = 6/122 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD +E D + + + +L+GK DYGIM+ AD+RF+R+DKR+KL
Sbjct: 624 ARL-EFLRDMYHIKENDFLTFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFSRTDKRNKL 682
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWIQ+Y+T +NLST+ ++ ++++L+ MAQPF +D G++ +++L E + +
Sbjct: 683 PKWIQQYITSGTSNLSTDMSIAFAEKFLKAMAQPFNIKDQEGISWWDIEKLHEYQKKEKQ 742
Query: 936 EE 937
E
Sbjct: 743 TE 744
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 10/74 (13%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE RDD SV+RNYG +L++ + + PDG+V FF SY+Y+ES+ W K
Sbjct: 503 ISSKFEVRDDPSVVRNYGDILLEFSKITPDGLVAFFPSYIYMESINEIW----------K 552
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ ++
Sbjct: 553 YKLILVETPDSQET 566
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 40/57 (70%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
++ + I S+FE RDD SV+RNYG +L++ + + PDG+V FF SY+Y+ES+ E
Sbjct: 493 IITRGSNQVAISSKFEVRDDPSVVRNYGDILLEFSKITPDGLVAFFPSYIYMESINE 549
>gi|302503364|ref|XP_003013642.1| hypothetical protein ARB_00089 [Arthroderma benhamiae CBS 112371]
gi|291177207|gb|EFE33002.1| hypothetical protein ARB_00089 [Arthroderma benhamiae CBS 112371]
Length = 749
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/418 (47%), Positives = 277/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ ++++ + GE++ +C ++E D + + PGV+++ L
Sbjct: 79 VKREKSGAVVDARCRSLTAGFIKEKKEKGEDVELCIYHENLDLLEPSNLVPPGVFTLDGL 138
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF AR+ + + +++YSYHYLLDPKIA VSKEL+R S++VFDEAHNID
Sbjct: 139 LKYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNID 198
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA LE + +MK +D+ KL+ EY +LVEGLR+A ARE
Sbjct: 199 NVCIESLSIDLTEDSLRKASRGANNLERKIDDMKSSDADKLQNEYQKLVEGLREADEARE 258
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ ++ANPVLPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V + E+P +FL
Sbjct: 259 EEQLMANPVLPDDLLKESVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPLSFL-- 316
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ LKD++ IERKPLRFCA
Sbjct: 317 ---------------------------------------SHLKDLT---FIERKPLRFCA 334
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ D+ L + ATL ++Y KGF +I+EPF TVPNP+L+F
Sbjct: 335 ERLTSLVRTLELVNIEDYQPLQEVATFATLAATYEKGFLLILEPFESDTATVPNPILHFT 394
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGTLSPL+MYPK+L F + S+SMTLAR LPM+
Sbjct: 395 CLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFDAALQESYSMTLARRSFLPMI 452
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 139/197 (70%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ ++++ + GE++ +C ++E D + + PGV+++
Sbjct: 78 SVKREKSGAVVDARCRSLTAGFIKEKKEKGEDVELCIYHENLDLLEPSNLVPPGVFTLDG 137
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L + G + CPYF AR+ + + +++YSYHYLLDPKIA VSKEL+R S++VFDEAHNI
Sbjct: 138 LLKYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNI 197
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA LE + +MK +D+ KL+ EY +LVEGLR+A AR
Sbjct: 198 DNVCIESLSIDLTEDSLRKASRGANNLERKIDDMKSSDADKLQNEYQKLVEGLREADEAR 257
Query: 835 ETDVVLANPVLPDEILQ 851
E + ++ANPVLPD++L+
Sbjct: 258 EEEQLMANPVLPDDLLK 274
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 78/126 (61%), Gaps = 10/126 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR++L
Sbjct: 593 ARL-EFLRENYRIRENDFLSFDALRHAAQCLGRVLRGKDDYGVMVLADRRFQK--KRNQL 649
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + ++ TNLST+ AV +K +L+ MAQPF +D G++ SL+ L K H +
Sbjct: 650 PKWISQAMLESETNLSTDMAVATAKSFLKSMAQPFKAKDQEGISTWSLEDL--KRHLEKQ 707
Query: 936 EEEVPR 941
++E+ +
Sbjct: 708 KQEIEK 713
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 52/74 (70%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG +L++ + PDGVV FF SYLY+ES+++ W GI+D++
Sbjct: 462 ISSSFQIRNDPGVVRNYGNMLLEFCRITPDGVVVFFPSYLYMESIISMWQGMGILDSVWN 521
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ +S
Sbjct: 522 YKLILVETPDSQES 535
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 59/101 (58%), Gaps = 10/101 (9%)
Query: 465 MPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI 524
MPSGTGKT +LL+LIVAY +P + KL+YCSRT+ EIEK + EL L Y + +
Sbjct: 1 MPSGTGKTITLLALIVAYQQHYP-EHRKLIYCSRTMSEIEKALSELRALMKYRSQKLGVV 59
Query: 525 -NMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
+ L L+SRKNLC+H SV R +VD C
Sbjct: 60 EDFRALGLTSRKNLCLHP--------SVKREKSGAVVDARC 92
>gi|315056317|ref|XP_003177533.1| DNA repair helicase RAD3 [Arthroderma gypseum CBS 118893]
gi|311339379|gb|EFQ98581.1| DNA repair helicase RAD3 [Arthroderma gypseum CBS 118893]
Length = 790
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/418 (47%), Positives = 277/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ ++++ + GE++ +C ++E D + + PGV+++ L
Sbjct: 120 VKREKSGAVVDARCRSLTAGFIKEKKEKGEDVELCIYHENLDLLEPSNLVPPGVFTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF AR+ + + +++YSYHYLLDPKIA VSKEL+R S++VFDEAHNID
Sbjct: 180 IKYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA LE + EMK +D+ KL+ EY +LVEGLR+A ARE
Sbjct: 240 NVCIESLSIDLTEDSLRKAGRGASNLERKIDEMKSSDADKLQNEYQKLVEGLREADEARE 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ ++ANPVLPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V + E+P +FL
Sbjct: 300 EEQLMANPVLPDDLLKESVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPLSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ LKD++ IERKPLRFCA
Sbjct: 358 ---------------------------------------SHLKDLT---FIERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ D+ L + ATL ++Y KGF +I+EPF TVPNP+L+F
Sbjct: 376 ERLTSLVRTLELVNIEDYQPLQEVATFATLAATYEKGFLLILEPFESDTATVPNPILHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGTLSPL+MYPK+L F + S+SMTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFDAALQESYSMTLARRSFLPMI 493
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 139/197 (70%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ ++++ + GE++ +C ++E D + + PGV+++
Sbjct: 119 SVKREKSGAVVDARCRSLTAGFIKEKKEKGEDVELCIYHENLDLLEPSNLVPPGVFTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L + G + CPYF AR+ + + +++YSYHYLLDPKIA VSKEL+R S++VFDEAHNI
Sbjct: 179 LIKYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA LE + EMK +D+ KL+ EY +LVEGLR+A AR
Sbjct: 239 DNVCIESLSIDLTEDSLRKAGRGASNLERKIDEMKSSDADKLQNEYQKLVEGLREADEAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
E + ++ANPVLPD++L+
Sbjct: 299 EEEQLMANPVLPDDLLK 315
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 92/142 (64%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M +IDDLP+ FPY IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT +LL+LIVAY
Sbjct: 1 MEFLIDDLPILFPYPRIYPEQYAYMCDLKKVLDAGGHCVLEMPSGTGKTITLLALIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRT+ EIEK + EL L Y + + + L L+SRKNLC+H
Sbjct: 61 QHYP-EHRKLIYCSRTMSEIEKALNELRALMKYRSQKLGVVEDFRALGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 -------SVKREKSGAVVDARC 133
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 79/126 (62%), Gaps = 11/126 (8%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR++L
Sbjct: 634 ARL-EFLRENYRIRENDFLSFDALRHAAQCLGRVLRGKDDYGVMVLADRRFQK--KRNQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL---LEKEHA 932
PKWI + + ++ TNLST+ AV +K +L+ MAQPF +D G++ SL+ L LEK+
Sbjct: 691 PKWISQAMLESETNLSTDMAVATAKSFLKSMAQPFKAKDQEGISTWSLEDLKRHLEKQKQ 750
Query: 933 RAEEEE 938
+E+E+
Sbjct: 751 ESEKEQ 756
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 52/74 (70%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG +L++ + PDGVV FF SYLY+ES+++ W GI+D++
Sbjct: 503 ISSSFQIRNDPGVVRNYGNMLLEFCRITPDGVVVFFPSYLYMESIISMWQGMGILDSVWN 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ +S
Sbjct: 563 YKLILVETPDSQES 576
>gi|190347854|gb|EDK40205.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 843
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 219/516 (42%), Positives = 305/516 (59%), Gaps = 87/516 (16%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP-----------VCDFYEKFDAVGREAP 49
+SKER G +VD +C +T+ ++ + ++G P +C+++E + + +
Sbjct: 173 ISKERKGNVVDEKCRRITNGQLKQKIESGAVSPDLQANNPEAYTLCNYHENMNDMDSHSY 232
Query: 50 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 109
+ GVYS L +E +CPYF R+ I I++YSYHYLLDPKIA VSKEL++ S
Sbjct: 233 VPNGVYSFDGLINYSKEKQICPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSKELSKDS 292
Query: 110 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 169
+++FDEAHNIDNVC++SLS+ + T+++A L + EMK DS KL+ EY +LV
Sbjct: 293 IIIFDEAHNIDNVCIESLSLDLTDDTLKRATRGANKLGEAVDEMKAQDSEKLQNEYEKLV 352
Query: 170 EGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQV 229
EGLRDA+ AR+ ++ ++NP LP ++L E +PGNIR AEHF+ FLKRFIEYLKTR++V V
Sbjct: 353 EGLRDAEIARDEELFMSNPALPQDLLDEAIPGNIRKAEHFISFLKRFIEYLKTRMKVLHV 412
Query: 230 VQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKV 289
+ E+P +FL +HLK TF
Sbjct: 413 ISETPLSFL-----------------------QHLKD------------LTF-------- 429
Query: 290 CIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKA 349
IERKPLRFC+ERL+ L+RTLE++ + DF++L I ATLVS+Y +GF +I+EPF
Sbjct: 430 -IERKPLRFCSERLSLLVRTLELSEIEDFNALKDIATFATLVSTYDRGFQLILEPFETDG 488
Query: 350 PTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTL 409
TVPNP+L+F CLD+S+A+KPVFDRF +V+ITSGT+SPLDMYP++LNFQ VI S++MTL
Sbjct: 489 ATVPNPILHFTCLDASIAMKPVFDRFSSVIITSGTISPLDMYPRMLNFQTVIQESYTMTL 548
Query: 410 ARPCLLPM----------------------VRENYAMGLMI-------DDLPVFFPYEYI 440
AR LPM V NY L+I D + VFFP Y+
Sbjct: 549 ARRSFLPMIVTKGADQVSISSQFEIRNDPSVVRNYG-SLLIEFSKITPDGMVVFFP-SYL 606
Query: 441 YPEQYAYMVELKKALD-AKGHCLLEMPSGTGKTTSL 475
Y E M + LD H L+ + + + TSL
Sbjct: 607 YMESIISMWQTMGVLDEVWKHKLILVETPDAQVTSL 642
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 132/207 (63%), Gaps = 11/207 (5%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP-----------VCDFYEKFDAVGREA 703
++SKER G +VD +C +T+ ++ + ++G P +C+++E + + +
Sbjct: 172 TISKERKGNVVDEKCRRITNGQLKQKIESGAVSPDLQANNPEAYTLCNYHENMNDMDSHS 231
Query: 704 PLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARS 763
+ GVYS L +E +CPYF R+ I I++YSYHYLLDPKIA VSKEL++
Sbjct: 232 YVPNGVYSFDGLINYSKEKQICPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSKELSKD 291
Query: 764 SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARL 823
S+++FDEAHNIDNVC++SLS+ + T+++A L + EMK DS KL+ EY +L
Sbjct: 292 SIIIFDEAHNIDNVCIESLSLDLTDDTLKRATRGANKLGEAVDEMKAQDSEKLQNEYEKL 351
Query: 824 VEGLRDAQSARETDVVLANPVLPDEIL 850
VEGLRDA+ AR+ ++ ++NP LP ++L
Sbjct: 352 VEGLRDAEIARDEELFMSNPALPQDLL 378
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 87/122 (71%), Gaps = 8/122 (6%)
Query: 423 AMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
+M IDDLPV FPY IYPEQYAYM ++KK LD G+C+LEMPSGTGKT SLLSL VAY
Sbjct: 53 SMKFFIDDLPVLFPYPRIYPEQYAYMSDIKKTLDVGGNCILEMPSGTGKTISLLSLTVAY 112
Query: 483 MNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI----NMTGLVLSSRKNLC 538
+P + K++YCSRT+ EIEK + EL +L +Y EE+ + GL L+SRKNLC
Sbjct: 113 QMHYP-EHRKIVYCSRTMSEIEKALIELHKLMEY---RAEELGYVEDFRGLGLTSRKNLC 168
Query: 539 IH 540
IH
Sbjct: 169 IH 170
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 52/71 (73%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D SV+RNYG LL++ + + PDG+V FF SYLY+ES+++ W G++D + K
Sbjct: 567 ISSQFEIRNDPSVVRNYGSLLIEFSKITPDGMVVFFPSYLYMESIISMWQTMGVLDEVWK 626
Query: 640 RKLLFIETQDA 650
KL+ +ET DA
Sbjct: 627 HKLILVETPDA 637
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 72/118 (61%), Gaps = 10/118 (8%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GK DYGIM+ AD+RF R K+++L
Sbjct: 698 ARL-EFLRDNYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFRR--KKNQL 754
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL--LEKEH 931
PKWI + L ++ NLST+ A+ +K++LR +AQP +D GV++ + QL + EH
Sbjct: 755 PKWIAQALYESDENLSTDMALANAKKFLRSLAQPTNPKDQEGVSVWDIHQLEKFQNEH 812
>gi|326475278|gb|EGD99287.1| DNA repair helicase RAD3 [Trichophyton tonsurans CBS 112818]
Length = 789
Score = 400 bits (1029), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/418 (47%), Positives = 277/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ ++++ + GE++ +C ++E D + + PGV+++ L
Sbjct: 120 VKREKSGAVVDARCRSLTAGFIKEKKEKGEDVELCIYHENLDLLEPSNLVPPGVFTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF AR+ + + +++YSYHYLLDPKIA VSKEL+R S++VFDEAHNID
Sbjct: 180 LKYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA LE + +MK +D+ KL+ EY +LVEGLR+A ARE
Sbjct: 240 NVCIESLSIDLTEDSLRKASRGANNLERKIDDMKSSDADKLQSEYQKLVEGLREADEARE 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ ++ANPVLPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V + E+P +FL
Sbjct: 300 EEQLMANPVLPDDLLKESVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPLSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ LKD++ IERKPLRFCA
Sbjct: 358 ---------------------------------------SHLKDLT---FIERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ D+ L + ATL ++Y KGF +I+EPF TVPNP+L+F
Sbjct: 376 ERLTSLVRTLELVNIEDYQPLQEVATFATLAATYEKGFLLILEPFESDTATVPNPILHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGTLSPL+MYPK+L F + S+SMTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFDAALQESYSMTLARRSFLPMI 493
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 139/197 (70%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ ++++ + GE++ +C ++E D + + PGV+++
Sbjct: 119 SVKREKSGAVVDARCRSLTAGFIKEKKEKGEDVELCIYHENLDLLEPSNLVPPGVFTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L + G + CPYF AR+ + + +++YSYHYLLDPKIA VSKEL+R S++VFDEAHNI
Sbjct: 179 LLKYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA LE + +MK +D+ KL+ EY +LVEGLR+A AR
Sbjct: 239 DNVCIESLSIDLTEDSLRKASRGANNLERKIDDMKSSDADKLQSEYQKLVEGLREADEAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
E + ++ANPVLPD++L+
Sbjct: 299 EEEQLMANPVLPDDLLK 315
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 91/142 (64%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLP+ FPY IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT +LL+LIVAY
Sbjct: 1 MEFFIDDLPILFPYPRIYPEQYAYMCDLKKVLDAGGHCVLEMPSGTGKTITLLALIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRT+ EIEK + EL L Y + + + L L+SRKNLC+H
Sbjct: 61 QHYP-EHRKLIYCSRTMSEIEKALSELRALMKYRSQKLGVVEDFRALGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 -------SVKREKSGAVVDARC 133
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 78/126 (61%), Gaps = 10/126 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR++L
Sbjct: 634 ARL-EFLRENYRIRENDFLSFDALRHAAQCLGRVLRGKDDYGVMVLADRRFQK--KRNQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + ++ TNLST+ AV +K +L+ MAQPF +D G++ SL+ L K H +
Sbjct: 691 PKWISQAMLESETNLSTDMAVATAKSFLKSMAQPFKAKDQEGISTWSLEDL--KRHLEKQ 748
Query: 936 EEEVPR 941
++EV +
Sbjct: 749 KQEVEK 754
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 52/74 (70%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG +L++ + PDGVV FF SYLY+ES+++ W GI+D++
Sbjct: 503 ISSSFQIRNDPGVVRNYGNMLLEFCRITPDGVVVFFPSYLYMESIISMWQGMGILDSVWN 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ +S
Sbjct: 563 YKLILVETPDSQES 576
>gi|426200162|gb|EKV50086.1| hypothetical protein AGABI2DRAFT_183219 [Agaricus bisporus var.
bisporus H97]
Length = 792
Score = 400 bits (1029), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/419 (47%), Positives = 281/419 (67%), Gaps = 46/419 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITK 59
VS+E+ GK+VD RC LT+S+V ++ +A ++ +CD++E + + G++++
Sbjct: 126 VSREKKGKVVDARCRDLTNSAVCEKGRADPGSVELCDWHENLGKMEPGHLMPAGIWTLAD 185
Query: 60 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
+ + G+E +CPYF R+ + V+YS+HYLLDPK+A VSKE+++ S+VVFDEAHNI
Sbjct: 186 VLDYGKEQRICPYFAVRRMMPFVDAVIYSFHYLLDPKVAEQVSKEMSKDSIVVFDEAHNI 245
Query: 120 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 179
DNVC++SLS+ + R ++ AV ++ L ++E+K D+AKL++EYA+LVEGL++ +
Sbjct: 246 DNVCIESLSIDLTRPMLDSAVRSVTKLGEKIEEVKTTDAAKLQDEYAKLVEGLQEPDDS- 304
Query: 180 ETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLK 239
+TD LANPVLP++IL+E +PGNIR AEHFV FLKRF+EYLKTR+RV VV E+P +FL+
Sbjct: 305 DTDNALANPVLPEDILKEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAETPLSFLQ 364
Query: 240 DISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFC 299
LKDI+ IER+PLRFC
Sbjct: 365 -----------------------------------------HLKDITY---IERRPLRFC 380
Query: 300 AERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYF 359
AERL SL+RTLE++ L + SSL + ATLV++Y KGF +I+EPF TVPNP+ +F
Sbjct: 381 AERLQSLIRTLELSRLDEHSSLQKVATFATLVATYEKGFLLILEPFETDNATVPNPIFHF 440
Query: 360 CCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD SLAIKPVF+RF +VVITSGT+SPLDMYPK+L F PV+ ++SMTL R LP+V
Sbjct: 441 TCLDPSLAIKPVFERFSSVVITSGTISPLDMYPKMLQFTPVVQETYSMTLTRNAFLPLV 499
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 140/197 (71%), Gaps = 2/197 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITK 714
VS+E+ GK+VD RC LT+S+V ++ +A ++ +CD++E + + G++++
Sbjct: 126 VSREKKGKVVDARCRDLTNSAVCEKGRADPGSVELCDWHENLGKMEPGHLMPAGIWTLAD 185
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ + G+E +CPYF R+ + V+YS+HYLLDPK+A VSKE+++ S+VVFDEAHNI
Sbjct: 186 VLDYGKEQRICPYFAVRRMMPFVDAVIYSFHYLLDPKVAEQVSKEMSKDSIVVFDEAHNI 245
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + R ++ AV ++ L ++E+K D+AKL++EYA+LVEGL++ +
Sbjct: 246 DNVCIESLSIDLTRPMLDSAVRSVTKLGEKIEEVKTTDAAKLQDEYAKLVEGLQEPDDS- 304
Query: 835 ETDVVLANPVLPDEILQ 851
+TD LANPVLP++IL+
Sbjct: 305 DTDNALANPVLPEDILK 321
Score = 149 bits (376), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 75/126 (59%), Positives = 89/126 (70%), Gaps = 8/126 (6%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID+LP+ FPY+ IYPEQYAYM +LK+ LDA GHC+LEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFFIDNLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN-------EEINMTGLVLSSRKN 536
+P KL+YCSRTVPEIEK + EL RL Y + +E N GL L+SRKN
Sbjct: 61 QFYPTK-RKLIYCSRTVPEIEKALTELKRLMKYREEAAESEEEKIKERNYMGLGLTSRKN 119
Query: 537 LCIHSE 542
LCI+ E
Sbjct: 120 LCINPE 125
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 80/118 (67%), Gaps = 8/118 (6%)
Query: 821 ARLVEGLRDAQSARET-----DVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRDA RE+ D + +L+GKTD+G+M+FADKRFAR+DKR+KL
Sbjct: 640 ARL-EYLRDAYRIRESEFLGFDAMRNAAQCVGRVLRGKTDWGLMVFADKRFARADKRAKL 698
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHAR 933
P+WI +Y+T+ +NLST+ A+ LSK ++R ++Q E+ GV+L +L+ +EK A+
Sbjct: 699 PRWINQYITETASNLSTDMAITLSKLFMRTISQN-PNENQTGVSLWALED-IEKAQAK 754
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 72/109 (66%), Gaps = 5/109 (4%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +LV+ + +VPDG+V FF SYLY+ES+VA+W D GI++ + K
Sbjct: 509 ISSRFEVRNDPAVVRNFGSILVEYSKIVPDGIVAFFPSYLYMESIVAAWNDMGILNEVWK 568
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENI 687
KL+F+ET DA + S++ E + D GR L S + R K E I
Sbjct: 569 HKLIFVETPDA-NETSIALENYRRACDNGRGAVLLSVA---RGKVSEGI 613
>gi|302816593|ref|XP_002989975.1| hypothetical protein SELMODRAFT_269587 [Selaginella moellendorffii]
gi|300142286|gb|EFJ08988.1| hypothetical protein SELMODRAFT_269587 [Selaginella moellendorffii]
Length = 752
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/433 (45%), Positives = 271/433 (62%), Gaps = 49/433 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS E + VD C LT+S VR + +I C FY+ ++ G E PL PGVY++ L
Sbjct: 121 VSSETSRESVDAGCRKLTASWVRAAAETNPDIETCSFYQGYEKQGSEQPLPPGVYTLHDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ GR+ G CPYFLARQ I A +VVY+Y YLLDPK++ ++SKE+ + +VVFDEAHNID
Sbjct: 181 RVYGRQRGWCPYFLARQMIQFANVVVYNYQYLLDPKVSGIISKEMQKECIVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+++LSV + + ++ A NI L + KE D+ +LR+EY RLVEGL +
Sbjct: 241 NVCIEALSVNLRQNNLDGASRNIHKLNQIISRFKETDANRLRQEYNRLVEGLAQQGNLHG 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+D LANPVLP++IL+E VPGNIR AEHFV FL+R ++YL+ RL VV+E P +F
Sbjct: 301 SDNWLANPVLPEDILREAVPGNIRRAEHFVAFLQRAVQYLRERLDTDTVVKEGPVSFTTT 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+S+ +++K L+FC
Sbjct: 361 MSTAAG--------------------------------------------LDQKALKFCY 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
+RL SLL TLE+T + +F + + + TLV +YT+GF+II+EP+ ++ P +P+PVL
Sbjct: 377 DRLHSLLLTLEVTEIDEFLHVQTVCNFLTLVGTYTRGFSIIIEPYDERMPHIPDPVLQLS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMVRE 420
CLD+SLAIKPVFDRFQ+VVITSGTLSP+D+YP++LNF PVI+HSF+MTL R CL PM+
Sbjct: 437 CLDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFNPVIIHSFTMTLTRDCLCPMI-- 494
Query: 421 NYAMGLMIDDLPV 433
+ D LPV
Sbjct: 495 ---LARGSDQLPV 504
Score = 199 bits (506), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 102/234 (43%), Positives = 142/234 (60%), Gaps = 7/234 (2%)
Query: 618 YLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSV 677
+LY E + S + + L RK L I VS E + VD C LT+S V
Sbjct: 90 HLYQEKEIGSSRAKILALGLSSRKNLCIHP-------VVSSETSRESVDAGCRKLTASWV 142
Query: 678 RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHA 737
R + +I C FY+ ++ G E PL PGVY++ L+ GR+ G CPYFLARQ I A
Sbjct: 143 RAAAETNPDIETCSFYQGYEKQGSEQPLPPGVYTLHDLRVYGRQRGWCPYFLARQMIQFA 202
Query: 738 KIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN 797
+VVY+Y YLLDPK++ ++SKE+ + +VVFDEAHNIDNVC+++LSV + + ++ A N
Sbjct: 203 NVVVYNYQYLLDPKVSGIISKEMQKECIVVFDEAHNIDNVCIEALSVNLRQNNLDGASRN 262
Query: 798 IQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
I L + KE D+ +LR+EY RLVEGL + +D LANPVLP++IL+
Sbjct: 263 IHKLNQIISRFKETDANRLRQEYNRLVEGLAQQGNLHGSDNWLANPVLPEDILR 316
Score = 143 bits (360), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 90/119 (75%), Gaps = 3/119 (2%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M +I+ L V+FPYE+IY EQYAYMVELK ALDA+GHCLLEMP+GTGKT +LLSLI +Y
Sbjct: 1 MKFVIEGLTVYFPYEFIYREQYAYMVELKHALDARGHCLLEMPTGTGKTITLLSLITSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH--NEEINMTGLVLSSRKNLCIH 540
A+P + KL+YC+RTV E+EKV++EL RL Y K + + L LSSRKNLCIH
Sbjct: 61 LANP-SLAKLIYCTRTVHEMEKVLDELRRLHLYQEKEIGSSRAKILALGLSSRKNLCIH 118
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 578 LYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNL 637
L + S F+ R D V+RNYG+LL+++ VPDGVVCFF SY Y++ ++ SW + GI+ +
Sbjct: 502 LPVSSKFDMRSDPGVVRNYGRLLLEMVATVPDGVVCFFVSYSYMDGIINSWNEMGILQEV 561
Query: 638 QKRKLLFIETQDALDS 653
+ KL+FIETQD +++
Sbjct: 562 MQHKLVFIETQDYVET 577
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 60/94 (63%), Gaps = 6/94 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD +E D + + V +++ K DYG+MIFADKR+ +KR+KL
Sbjct: 635 ARL-EYLRDTFQIKEGDFLTFDAVRQAAQCVGRVIRSKADYGMMIFADKRYNLPNKRNKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQP 909
P+WIQ L + NLST+ AV +++ +LR+MAQP
Sbjct: 694 PQWIQSQLREEHLNLSTDMAVHIAREFLRRMAQP 727
>gi|146415208|ref|XP_001483574.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 843
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 219/516 (42%), Positives = 304/516 (58%), Gaps = 87/516 (16%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP-----------VCDFYEKFDAVGREAP 49
+SKER G +VD +C +T+ ++ + + G P +C+++E + + +
Sbjct: 173 ISKERKGNVVDEKCRRITNGQLKQKIELGAVSPDLQANNPEAYTLCNYHENMNDMDSHSY 232
Query: 50 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 109
+ GVYS L +E +CPYF R+ I I++YSYHYLLDPKIA VSKEL++ S
Sbjct: 233 VPNGVYSFDGLINYSKEKQICPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSKELSKDS 292
Query: 110 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 169
+++FDEAHNIDNVC++SLS+ + T+++A L + EMK DS KL+ EY +LV
Sbjct: 293 IIIFDEAHNIDNVCIESLSLDLTDDTLKRATRGANKLGEAVDEMKAQDSEKLQNEYEKLV 352
Query: 170 EGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQV 229
EGLRDA+ AR+ ++ ++NP LP ++L E +PGNIR AEHF+ FLKRFIEYLKTR++V V
Sbjct: 353 EGLRDAEIARDEELFMSNPALPQDLLDEAIPGNIRKAEHFISFLKRFIEYLKTRMKVLHV 412
Query: 230 VQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKV 289
+ E+P +FL +HLK TF
Sbjct: 413 ISETPLSFL-----------------------QHLKD------------LTF-------- 429
Query: 290 CIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKA 349
IERKPLRFC+ERL+ L+RTLE++ + DF++L I ATLVS+Y +GF +I+EPF
Sbjct: 430 -IERKPLRFCSERLSLLVRTLELSEIEDFNALKDIATFATLVSTYDRGFQLILEPFETDG 488
Query: 350 PTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTL 409
TVPNP+L+F CLD+S+A+KPVFDRF +V+ITSGT+SPLDMYP++LNFQ VI S++MTL
Sbjct: 489 ATVPNPILHFTCLDASIAMKPVFDRFSSVIITSGTISPLDMYPRMLNFQTVIQESYTMTL 548
Query: 410 ARPCLLPM----------------------VRENYAMGLMI-------DDLPVFFPYEYI 440
AR LPM V NY L+I D + VFFP Y+
Sbjct: 549 ARRSFLPMIVTKGADQVSISSQFEIRNDPSVVRNYG-SLLIEFSKITPDGMVVFFP-SYL 606
Query: 441 YPEQYAYMVELKKALD-AKGHCLLEMPSGTGKTTSL 475
Y E M + LD H L+ + + + TSL
Sbjct: 607 YMESIISMWQTMGVLDEVWKHKLILVETPDAQVTSL 642
Score = 179 bits (453), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 131/207 (63%), Gaps = 11/207 (5%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP-----------VCDFYEKFDAVGREA 703
++SKER G +VD +C +T+ ++ + + G P +C+++E + + +
Sbjct: 172 TISKERKGNVVDEKCRRITNGQLKQKIELGAVSPDLQANNPEAYTLCNYHENMNDMDSHS 231
Query: 704 PLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARS 763
+ GVYS L +E +CPYF R+ I I++YSYHYLLDPKIA VSKEL++
Sbjct: 232 YVPNGVYSFDGLINYSKEKQICPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSKELSKD 291
Query: 764 SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARL 823
S+++FDEAHNIDNVC++SLS+ + T+++A L + EMK DS KL+ EY +L
Sbjct: 292 SIIIFDEAHNIDNVCIESLSLDLTDDTLKRATRGANKLGEAVDEMKAQDSEKLQNEYEKL 351
Query: 824 VEGLRDAQSARETDVVLANPVLPDEIL 850
VEGLRDA+ AR+ ++ ++NP LP ++L
Sbjct: 352 VEGLRDAEIARDEELFMSNPALPQDLL 378
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 87/122 (71%), Gaps = 8/122 (6%)
Query: 423 AMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
+M IDDLPV FPY IYPEQYAYM ++KK LD G+C+LEMPSGTGKT SLLSL VAY
Sbjct: 53 SMKFFIDDLPVLFPYPRIYPEQYAYMSDIKKTLDVGGNCILEMPSGTGKTISLLSLTVAY 112
Query: 483 MNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI----NMTGLVLSSRKNLC 538
+P + K++YCSRT+ EIEK + EL +L +Y EE+ + GL L+SRKNLC
Sbjct: 113 QMHYP-EHRKIVYCSRTMSEIEKALIELHKLMEY---RAEELGYVEDFRGLGLTSRKNLC 168
Query: 539 IH 540
IH
Sbjct: 169 IH 170
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 52/71 (73%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D SV+RNYG LL++ + + PDG+V FF SYLY+ES+++ W G++D + K
Sbjct: 567 ISSQFEIRNDPSVVRNYGSLLIEFSKITPDGMVVFFPSYLYMESIISMWQTMGVLDEVWK 626
Query: 640 RKLLFIETQDA 650
KL+ +ET DA
Sbjct: 627 HKLILVETPDA 637
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 72/118 (61%), Gaps = 10/118 (8%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GK DYGIM+ AD+RF R K+++L
Sbjct: 698 ARL-EFLRDNYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFRR--KKNQL 754
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL--LEKEH 931
PKWI + L ++ NLST+ A+ +K++LR +AQP +D GV++ + QL + EH
Sbjct: 755 PKWIAQALYESDENLSTDMALANAKKFLRSLAQPTNPKDQEGVSVWDIHQLEKFQNEH 812
>gi|409082328|gb|EKM82686.1| hypothetical protein AGABI1DRAFT_118129 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 792
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/419 (47%), Positives = 281/419 (67%), Gaps = 46/419 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITK 59
VS+E+ GK+VD RC LT+S+V ++ +A ++ +CD++E + + G++++
Sbjct: 126 VSREKKGKVVDARCRDLTNSAVCEKGRADPGSVELCDWHENLGKMEPGHLMPAGIWTLAD 185
Query: 60 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
+ + G+E +CPYF R+ + V+YS+HYLLDPK+A VSKE+++ S+VVFDEAHNI
Sbjct: 186 VLDYGKEQRICPYFAVRRMMPFVDAVIYSFHYLLDPKVAEQVSKEMSKDSIVVFDEAHNI 245
Query: 120 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 179
DNVC++SLS+ + R ++ AV ++ L ++E+K D+AKL++EYA+LVEGL++ +
Sbjct: 246 DNVCIESLSIDLTRPMLDSAVRSVTKLGEKIEEVKTTDAAKLQDEYAKLVEGLQEPDDS- 304
Query: 180 ETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLK 239
+TD LANPVLP++IL+E +PGNIR AEHFV FLKRF+EYLKTR+RV VV E+P +FL+
Sbjct: 305 DTDNALANPVLPEDILKEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAETPLSFLQ 364
Query: 240 DISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFC 299
LKDI+ IER+PLRFC
Sbjct: 365 -----------------------------------------HLKDITY---IERRPLRFC 380
Query: 300 AERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYF 359
AERL SL+RTLE++ L + SSL + ATLV++Y KGF +I+EPF TVPNP+ +F
Sbjct: 381 AERLQSLIRTLELSRLDEHSSLQKVATFATLVATYEKGFLLILEPFETDNATVPNPIFHF 440
Query: 360 CCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD SLAIKPVF+RF +VVITSGT+SPLDMYPK+L F PV+ ++SMTL R LP+V
Sbjct: 441 TCLDPSLAIKPVFERFSSVVITSGTISPLDMYPKMLQFTPVVQETYSMTLTRNAFLPLV 499
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 140/197 (71%), Gaps = 2/197 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITK 714
VS+E+ GK+VD RC LT+S+V ++ +A ++ +CD++E + + G++++
Sbjct: 126 VSREKKGKVVDARCRDLTNSAVCEKGRADPGSVELCDWHENLGKMEPGHLMPAGIWTLAD 185
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ + G+E +CPYF R+ + V+YS+HYLLDPK+A VSKE+++ S+VVFDEAHNI
Sbjct: 186 VLDYGKEQRICPYFAVRRMMPFVDAVIYSFHYLLDPKVAEQVSKEMSKDSIVVFDEAHNI 245
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + R ++ AV ++ L ++E+K D+AKL++EYA+LVEGL++ +
Sbjct: 246 DNVCIESLSIDLTRPMLDSAVRSVTKLGEKIEEVKTTDAAKLQDEYAKLVEGLQEPDDS- 304
Query: 835 ETDVVLANPVLPDEILQ 851
+TD LANPVLP++IL+
Sbjct: 305 DTDNALANPVLPEDILK 321
Score = 149 bits (375), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/126 (59%), Positives = 88/126 (69%), Gaps = 8/126 (6%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID+LP+ FPY+ IYPEQYAYM +LK+ LDA GHC+LEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFFIDNLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN-------EEINMTGLVLSSRKN 536
+P KL+YCSRTVPEIEK + EL RL Y + E N GL L+SRKN
Sbjct: 61 QFYPTK-RKLIYCSRTVPEIEKALTELKRLMKYREEAAESEEEKIRERNYMGLGLTSRKN 119
Query: 537 LCIHSE 542
LCI+ E
Sbjct: 120 LCINPE 125
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 80/118 (67%), Gaps = 8/118 (6%)
Query: 821 ARLVEGLRDAQSARET-----DVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRDA RE+ D + +L+GKTD+G+M+FADKRFAR+DKR+KL
Sbjct: 640 ARL-EYLRDAYRIRESEFLGFDAMRNAAQCVGRVLRGKTDWGLMVFADKRFARADKRAKL 698
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHAR 933
P+WI +Y+T+ +NLST+ A+ LSK ++R ++Q E+ G++L +L+ +EK A+
Sbjct: 699 PRWINQYITETASNLSTDMAITLSKLFMRTISQN-PNENQTGISLWALED-IEKAQAK 754
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 72/109 (66%), Gaps = 5/109 (4%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +LV+ + +VPDG+V FF SYLY+ES+VA+W D GI++ + K
Sbjct: 509 ISSRFEVRNDPAVVRNFGSILVEYSKIVPDGIVAFFPSYLYMESIVAAWNDMGILNEVWK 568
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENI 687
KL+F+ET DA + S++ E + D GR L S + R K E I
Sbjct: 569 HKLIFVETPDA-NETSIALENYRRACDNGRGAVLLSVA---RGKVSEGI 613
>gi|328855625|gb|EGG04750.1| hypothetical protein MELLADRAFT_108080 [Melampsora larici-populina
98AG31]
Length = 795
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/421 (47%), Positives = 279/421 (66%), Gaps = 47/421 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITK 59
VS+E+ GK+VD RC LTS+ ++ +A ++P+C+F+EK + + GV+++ +
Sbjct: 128 VSREKKGKVVDARCRDLTSAWACEQGRANPGSVPLCEFHEKLGELEAGDLIPRGVWTLEE 187
Query: 60 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
+ G + G+CPYF R+ + +A +V+YS+HYLLDPK+A VSKE++ +S+VVFDEAHNI
Sbjct: 188 ITNYGHQQGICPYFAVRRMLAYADVVIYSFHYLLDPKVATQVSKEISPNSIVVFDEAHNI 247
Query: 120 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDA--QS 177
DNVC++SLS+ +N+ ++ A I+ LE ++E+K D++KL+ EY RLV GL+ + +
Sbjct: 248 DNVCIESLSIDLNKSILDNAGRAIENLEVKIQEIKRTDASKLQNEYQRLVRGLQGSELEQ 307
Query: 178 ARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATF 237
A + V+A PVLPD++LQE +PGNIR AEHF FL RF+EYLKTR+RV VV E+P +F
Sbjct: 308 AEDEAGVIATPVLPDDLLQEAIPGNIRRAEHFTAFLTRFVEYLKTRMRVLHVVAETPLSF 367
Query: 238 LKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLR 297
L +HLK TF I+RKPLR
Sbjct: 368 L-----------------------QHLKD------------LTF---------IDRKPLR 383
Query: 298 FCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVL 357
FC+ERL SL+RTLE+T L ++ L + ATLV++Y KGF +I+EPF + TVPNPV
Sbjct: 384 FCSERLTSLIRTLELTQLDQYNGLQQVASFATLVATYEKGFLLILEPFETENATVPNPVF 443
Query: 358 YFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM 417
+ CLD+SLAIKPVFDRF +VVITSGT+SPLDMYPK+L F+ + S+SMTL R C LP+
Sbjct: 444 HLTCLDASLAIKPVFDRFSSVVITSGTISPLDMYPKMLGFESAVQESYSMTLTRNCFLPL 503
Query: 418 V 418
V
Sbjct: 504 V 504
Score = 186 bits (471), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 140/199 (70%), Gaps = 3/199 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITK 714
VS+E+ GK+VD RC LTS+ ++ +A ++P+C+F+EK + + GV+++ +
Sbjct: 128 VSREKKGKVVDARCRDLTSAWACEQGRANPGSVPLCEFHEKLGELEAGDLIPRGVWTLEE 187
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ G + G+CPYF R+ + +A +V+YS+HYLLDPK+A VSKE++ +S+VVFDEAHNI
Sbjct: 188 ITNYGHQQGICPYFAVRRMLAYADVVIYSFHYLLDPKVATQVSKEISPNSIVVFDEAHNI 247
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDA--QS 832
DNVC++SLS+ +N+ ++ A I+ LE ++E+K D++KL+ EY RLV GL+ + +
Sbjct: 248 DNVCIESLSIDLNKSILDNAGRAIENLEVKIQEIKRTDASKLQNEYQRLVRGLQGSELEQ 307
Query: 833 ARETDVVLANPVLPDEILQ 851
A + V+A PVLPD++LQ
Sbjct: 308 AEDEAGVIATPVLPDDLLQ 326
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/131 (54%), Positives = 84/131 (64%), Gaps = 16/131 (12%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDL + FPY+ IYPEQ M +LK+ LD GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MIFNIDDLEIIFPYDKIYPEQ---MSDLKRTLDVGGHCVLEMPSGTGKTISLLSLIVAYQ 57
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH------------NEEINMTGLVL 531
HP + KL+YCSRTVPEIEK + EL RL Y E+ + G+ L
Sbjct: 58 QNHP-EKRKLVYCSRTVPEIEKALIELKRLMAYRASQLRLRAELTNAGPIEDEDFLGIGL 116
Query: 532 SSRKNLCIHSE 542
+SRKNLCIH +
Sbjct: 117 TSRKNLCIHPD 127
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 86/132 (65%), Gaps = 17/132 (12%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GKTDYG+MIFADKRFA++DKR+KL
Sbjct: 645 ARL-EFLRDNYRIRENDYLTFDAMRHAAQCVGRVLRGKTDYGLMIFADKRFAKADKRAKL 703
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPF-TREDMLGVALLSLDQLLEKEHAR- 933
PKWI Y+TD TNLST+ A+ +SKR+LR MAQPF +D G++L ++++ +E R
Sbjct: 704 PKWINAYITDTATNLSTDMAMVISKRFLRSMAQPFEIGQD--GISLWGVEEIKAQEEKRR 761
Query: 934 -------AEEEE 938
AEEEE
Sbjct: 762 LPGPSATAEEEE 773
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D SV+RN+G +L+D +VPDG+V FF SYLY+ES+VA+W+D GI+ + K
Sbjct: 514 ISSRFEVRNDPSVVRNFGTVLIDYCKIVPDGIVAFFPSYLYMESIVAAWHDMGILKEVWK 573
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAG 684
KL+F+ET DA+++ S++ E + D ++ S R + G
Sbjct: 574 YKLIFVETPDAVET-SIALENYRRACDNGKGAVLLSVARGKVSEG 617
>gi|409045964|gb|EKM55444.1| hypothetical protein PHACADRAFT_256068 [Phanerochaete carnosa
HHB-10118-sp]
Length = 792
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/420 (47%), Positives = 281/420 (66%), Gaps = 49/420 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKE+ G++VD RC LT+S+V + R G ++ +CD++E + + PG++++
Sbjct: 126 VSKEKKGRVVDARCRDLTNSAVCQKGRDNPG-SVDLCDWHENLGKLEPGNLIPPGIWTLA 184
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+ + GR+ +CPYFL R+ + +V+YS+HYLLDPK+A VSKE+++ S+VVFDEAHN
Sbjct: 185 DVLQYGRDNVVCPYFLVRRMMAFVDVVIYSFHYLLDPKVAEQVSKEMSKDSIVVFDEAHN 244
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + R ++ A ++ L ++E+K D++KL++EYA+LVEGL++A A
Sbjct: 245 IDNVCIESLSIDLTRPMLDSAARSVTRLGDKIEEIKRTDASKLQDEYAKLVEGLQEA--A 302
Query: 179 RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL 238
+ D ++ANPVLP+++L E +PGNIR AEHFV FLKRF+EYLKTR+RV VV E+P +FL
Sbjct: 303 TDEDSLVANPVLPEDLLTEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAETPLSFL 362
Query: 239 KDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRF 298
+ LKDI+ IER+PLRF
Sbjct: 363 Q-----------------------------------------HLKDITY---IERRPLRF 378
Query: 299 CAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLY 358
CAERL SL+RTLE+ L +FS+L + ATLV++Y KGF +I+EPF TVPNP+ +
Sbjct: 379 CAERLQSLVRTLELNRLDEFSALQKVASFATLVATYEKGFLLILEPFETDNATVPNPIFH 438
Query: 359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
F CLD S+AIK VF+RF +VVITSGT+SPLDMYPK+L F PVI S+SMTL R LP+V
Sbjct: 439 FTCLDPSIAIKTVFERFSSVVITSGTISPLDMYPKMLQFTPVIQESYSMTLTRNSFLPLV 498
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 141/197 (71%), Gaps = 5/197 (2%)
Query: 656 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
VSKE+ G++VD RC LT+S+V + R G ++ +CD++E + + PG++++
Sbjct: 126 VSKEKKGRVVDARCRDLTNSAVCQKGRDNPG-SVDLCDWHENLGKLEPGNLIPPGIWTLA 184
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
+ + GR+ +CPYFL R+ + +V+YS+HYLLDPK+A VSKE+++ S+VVFDEAHN
Sbjct: 185 DVLQYGRDNVVCPYFLVRRMMAFVDVVIYSFHYLLDPKVAEQVSKEMSKDSIVVFDEAHN 244
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC++SLS+ + R ++ A ++ L ++E+K D++KL++EYA+LVEGL++A A
Sbjct: 245 IDNVCIESLSIDLTRPMLDSAARSVTRLGDKIEEIKRTDASKLQDEYAKLVEGLQEA--A 302
Query: 834 RETDVVLANPVLPDEIL 850
+ D ++ANPVLP+++L
Sbjct: 303 TDEDSLVANPVLPEDLL 319
Score = 153 bits (386), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 76/126 (60%), Positives = 90/126 (71%), Gaps = 8/126 (6%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY+ IYPEQY+YM +LK+ LDA GHC+LEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFYIDDLPVIFPYDRIYPEQYSYMCDLKRTLDAGGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYI-------KHNEEINMTGLVLSSRKN 536
+P KL+YCSRTVPEIEK + EL RL +Y + + +E GL L+SRKN
Sbjct: 61 QFYPAR-RKLIYCSRTVPEIEKALAELKRLMEYRLSIAETEEQQAKERGFYGLGLTSRKN 119
Query: 537 LCIHSE 542
LCIH E
Sbjct: 120 LCIHPE 125
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 82/121 (67%), Gaps = 8/121 (6%)
Query: 821 ARLVEGLRDAQSARET-----DVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE+ D + +L+GKTD+G+M+FADKRFAR+DKR+KL
Sbjct: 639 ARL-EYLRDTYRIRESEFLGFDAMRNAAQCVGRVLRGKTDWGLMVFADKRFARADKRAKL 697
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
P+WI +Y+T+ +NLST+ A+ LSK ++R ++Q E+ G++L +L+ +E++ A+ +
Sbjct: 698 PRWINQYITETASNLSTDMAITLSKLFMRTISQN-PNENQTGISLWTLED-VERQQAKQK 755
Query: 936 E 936
E
Sbjct: 756 E 756
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 72/109 (66%), Gaps = 5/109 (4%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +L++ + +VPDG+V FF SYLY+ES+VA+W D GI++ + K
Sbjct: 508 ISSRFEVRNDPAVVRNFGSILIEYSKIVPDGIVAFFPSYLYMESIVAAWNDMGILNEVWK 567
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENI 687
KL+F+ET DA + S++ E + D GR L S + R K E I
Sbjct: 568 YKLIFVETPDA-NETSIALENYRRACDNGRGAVLLSVA---RGKVSEGI 612
>gi|336364077|gb|EGN92441.1| hypothetical protein SERLA73DRAFT_99245 [Serpula lacrymans var.
lacrymans S7.3]
Length = 793
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/421 (47%), Positives = 278/421 (66%), Gaps = 48/421 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKE+ GK+VD RC LT+++V + R G ++ +CD++E + + PG++++
Sbjct: 126 VSKEKKGKVVDARCRDLTNTAVCEKARQDPG-SVDICDWHENLGQLEPGNLITPGIWTLA 184
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+ + GR+ LCPYF R+ + +V+YS+HYLLDPK+A VSKEL++ ++VVFDEAHN
Sbjct: 185 DVLQHGRDNKLCPYFTIRRMMPFVDVVIYSFHYLLDPKVAEQVSKELSKDAIVVFDEAHN 244
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRD-AQS 177
IDNVC++SLS+ + R ++ A ++ L ++E+K D+AKL++EYA+LVEGL + A
Sbjct: 245 IDNVCIESLSIDLTRPMLDSAARSVTKLGEKIEEIKTTDAAKLQDEYAKLVEGLEEPASE 304
Query: 178 ARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATF 237
A + D ++NPVLPD++L E +PGNIR AEHFV FLKRF+EYLKTR+RV VV E+P +F
Sbjct: 305 AADEDNFMSNPVLPDDLLNEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAETPLSF 364
Query: 238 LKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLR 297
L+ LKDI+ IER+PLR
Sbjct: 365 LQ-----------------------------------------HLKDITY---IERRPLR 380
Query: 298 FCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVL 357
FCAERL S++RTLE+ L ++SSL + ATLV++Y KGF +I+EPF TVPNP+
Sbjct: 381 FCAERLQSMIRTLELNRLDEYSSLQKVASFATLVATYEKGFLLILEPFETDNATVPNPIF 440
Query: 358 YFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM 417
+F CLD SLAIKPVF+RF +VVITSGT+SPLDMYPK+L F PV+ ++ MTL R LP+
Sbjct: 441 HFTCLDPSLAIKPVFERFSSVVITSGTISPLDMYPKMLQFTPVVQETYPMTLTRNAFLPL 500
Query: 418 V 418
V
Sbjct: 501 V 501
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 138/199 (69%), Gaps = 4/199 (2%)
Query: 656 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
VSKE+ GK+VD RC LT+++V + R G ++ +CD++E + + PG++++
Sbjct: 126 VSKEKKGKVVDARCRDLTNTAVCEKARQDPG-SVDICDWHENLGQLEPGNLITPGIWTLA 184
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
+ + GR+ LCPYF R+ + +V+YS+HYLLDPK+A VSKEL++ ++VVFDEAHN
Sbjct: 185 DVLQHGRDNKLCPYFTIRRMMPFVDVVIYSFHYLLDPKVAEQVSKELSKDAIVVFDEAHN 244
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRD-AQS 832
IDNVC++SLS+ + R ++ A ++ L ++E+K D+AKL++EYA+LVEGL + A
Sbjct: 245 IDNVCIESLSIDLTRPMLDSAARSVTKLGEKIEEIKTTDAAKLQDEYAKLVEGLEEPASE 304
Query: 833 ARETDVVLANPVLPDEILQ 851
A + D ++NPVLPD++L
Sbjct: 305 AADEDNFMSNPVLPDDLLN 323
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/126 (61%), Positives = 92/126 (73%), Gaps = 8/126 (6%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID+LP+ FPY+ IYPEQYAYM +LK+ LDA GHC+LEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFFIDNLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYI-------KHNEEINMTGLVLSSRKN 536
+P KL+YCSRTVPEIEK + EL RL +Y I + +E N TGL L+SRKN
Sbjct: 61 QFYPTR-RKLIYCSRTVPEIEKALAELKRLVEYRISCAETPEEKEKEQNFTGLGLTSRKN 119
Query: 537 LCIHSE 542
LCIH E
Sbjct: 120 LCIHPE 125
Score = 95.9 bits (237), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 84/124 (67%), Gaps = 10/124 (8%)
Query: 821 ARLVEGLRDAQSARET-----DVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRDA RE+ D + +L+GKTD+G+M+FADKRFAR+DKR+KL
Sbjct: 642 ARL-EYLRDAYRIRESEFLGFDAMRNAAQCVGRVLRGKTDWGLMVFADKRFARADKRAKL 700
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
P+WI +Y+T+ +NLST+ A+ LSK ++R ++Q E+ G++L +L+ + E A+A+
Sbjct: 701 PRWINQYITEVASNLSTDMALTLSKLFMRTISQN-PNENQTGISLWTLEDI---EKAQAK 756
Query: 936 EEEV 939
+ E+
Sbjct: 757 QREL 760
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 72/109 (66%), Gaps = 5/109 (4%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +L++ + +VPDG+V FF SYLY+ES+VA+W D GI++ + K
Sbjct: 511 ISSRFEVRNDPAVVRNFGSILIEYSKIVPDGIVAFFPSYLYMESIVAAWNDMGILNEVWK 570
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENI 687
KL+F+ET DA + S++ E + D GR L S + R K E I
Sbjct: 571 NKLIFVETPDA-NETSIALENYRRACDNGRGAVLLSVA---RGKVSEGI 615
>gi|344228422|gb|EGV60308.1| DNA helicase component of transcription factor b [Candida tenuis
ATCC 10573]
Length = 797
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/429 (46%), Positives = 273/429 (63%), Gaps = 55/429 (12%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAG-----------ENIPVCDFYEKFDAVGREAP 49
+SKER G +VD +C +T+ ++ R + G E +C F+E +
Sbjct: 120 ISKERKGAVVDEKCRRITNGQLKHRIEEGAIDEEAQRSNPEVNSLCKFHENLYDYEQHDL 179
Query: 50 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 109
+ PGVYS L + GRE CPYF R+ I I++YSYHYLLDPKIA VSKEL++ S
Sbjct: 180 IPPGVYSFESLMDFGREKSTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSKELSKDS 239
Query: 110 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 169
+++FDEAHNIDNVC++SLS+ + T+++A L +++MK DS KL+ EY +LV
Sbjct: 240 IIIFDEAHNIDNVCIESLSLDLTDDTLKRATRGANKLSDAIEDMKAQDSEKLQNEYEKLV 299
Query: 170 EGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQV 229
EGLR A+ AR+ ++ +ANP LP ++L E +PGNIR EHFV FLKRFIEYLKTR++V V
Sbjct: 300 EGLRQAEIARDEELFMANPTLPQDLLDEAIPGNIRKGEHFVSFLKRFIEYLKTRMKVLHV 359
Query: 230 VQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKV 289
+ E+P +FL +HLK TF
Sbjct: 360 ISETPNSFL-----------------------QHLKE------------LTF-------- 376
Query: 290 CIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKA 349
I+RKPLRFC+ERL+ L+RTLE+ ++ DF++L I ATLVS+Y KGF +I+EPF +
Sbjct: 377 -IDRKPLRFCSERLSLLVRTLELNDIEDFTALKDIATFATLVSTYDKGFQLILEPFETEG 435
Query: 350 PTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTL 409
TVPNP+L F CLD+S+A+KPVFDRF +V+ITSGT+SPLDMYPK+LNF+ VI S++MTL
Sbjct: 436 ATVPNPILRFTCLDASIAMKPVFDRFSSVIITSGTISPLDMYPKMLNFETVIQRSYTMTL 495
Query: 410 ARPCLLPMV 418
R LPM+
Sbjct: 496 DRRSFLPMI 504
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 130/207 (62%), Gaps = 11/207 (5%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAG-----------ENIPVCDFYEKFDAVGREA 703
++SKER G +VD +C +T+ ++ R + G E +C F+E +
Sbjct: 119 TISKERKGAVVDEKCRRITNGQLKHRIEEGAIDEEAQRSNPEVNSLCKFHENLYDYEQHD 178
Query: 704 PLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARS 763
+ PGVYS L + GRE CPYF R+ I I++YSYHYLLDPKIA VSKEL++
Sbjct: 179 LIPPGVYSFESLMDFGREKSTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSKELSKD 238
Query: 764 SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARL 823
S+++FDEAHNIDNVC++SLS+ + T+++A L +++MK DS KL+ EY +L
Sbjct: 239 SIIIFDEAHNIDNVCIESLSLDLTDDTLKRATRGANKLSDAIEDMKAQDSEKLQNEYEKL 298
Query: 824 VEGLRDAQSARETDVVLANPVLPDEIL 850
VEGLR A+ AR+ ++ +ANP LP ++L
Sbjct: 299 VEGLRQAEIARDEELFMANPTLPQDLL 325
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/118 (57%), Positives = 83/118 (70%), Gaps = 2/118 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM ++KK LD G+C+LEMPSGTGKT SLLSL VAY
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYAYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL L +Y + + GL L+SRKNLC+H
Sbjct: 61 MHYP-EHRKVVYCSRTMSEIEKALIELYNLMEYRANELGFVEDFRGLGLTSRKNLCLH 117
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 54/74 (72%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D SV+RNYG LL++ + + PDG+V FF SYLY+ES+++ W G++D + K
Sbjct: 514 ISSRFEIRNDPSVVRNYGSLLIEFSKITPDGMVVFFPSYLYMESIISMWQTMGVLDEVWK 573
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 574 YKLILVETPDAQET 587
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 68/108 (62%), Gaps = 8/108 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYGIM+ AD+RFAR KRS+L
Sbjct: 645 ARL-EFLRENNQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFAR--KRSQL 701
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSL 923
PKWI + L D+ NLST+ A+ +K++LR +AQP +D GV++ L
Sbjct: 702 PKWIAQALNDSDLNLSTDMALANAKKFLRTLAQPTNPKDQEGVSVWDL 749
>gi|327294313|ref|XP_003231852.1| DNA repair helicase RAD3 [Trichophyton rubrum CBS 118892]
gi|326465797|gb|EGD91250.1| DNA repair helicase RAD3 [Trichophyton rubrum CBS 118892]
Length = 790
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 198/418 (47%), Positives = 277/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ ++++ + GE++ +C ++E D + + PGV+++ L
Sbjct: 120 VKREKSGAVVDARCRSLTAGFIKEKKEKGEDVELCIYHENLDLLEPSNLVPPGVFTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF AR+ + + +++YSYHYLLDPKIA VSKEL+R S++VFDEAHNID
Sbjct: 180 LKYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA LE + +MK +D+ +L+ EY +LVEGLR+A ARE
Sbjct: 240 NVCIESLSIDLTEDSLRKASRGANNLERKIDDMKSSDADRLQNEYQKLVEGLREADEARE 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ ++ANPVLPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V + E+P +FL
Sbjct: 300 EEQLMANPVLPDDLLKESVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPLSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ LKD++ IERKPLRFCA
Sbjct: 358 ---------------------------------------SHLKDLT---FIERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ D+ L + ATL ++Y KGF +I+EPF TVPNP+L+F
Sbjct: 376 ERLTSLVRTLELVNIEDYQPLQEVATFATLAATYEKGFLLILEPFESDTATVPNPILHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGTLSPL+MYPK+L F + S+SMTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFDAALQESYSMTLARRSFLPMI 493
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 139/197 (70%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ ++++ + GE++ +C ++E D + + PGV+++
Sbjct: 119 SVKREKSGAVVDARCRSLTAGFIKEKKEKGEDVELCIYHENLDLLEPSNLVPPGVFTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L + G + CPYF AR+ + + +++YSYHYLLDPKIA VSKEL+R S++VFDEAHNI
Sbjct: 179 LLKYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA LE + +MK +D+ +L+ EY +LVEGLR+A AR
Sbjct: 239 DNVCIESLSIDLTEDSLRKASRGANNLERKIDDMKSSDADRLQNEYQKLVEGLREADEAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
E + ++ANPVLPD++L+
Sbjct: 299 EEEQLMANPVLPDDLLK 315
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 91/142 (64%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLP+ FPY IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT +LL+LIVAY
Sbjct: 1 MEFFIDDLPILFPYPRIYPEQYAYMCDLKKVLDAGGHCVLEMPSGTGKTITLLALIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRT+ EIEK + EL L Y + + + L L+SRKNLC+H
Sbjct: 61 QHYP-EHRKLIYCSRTMSEIEKALSELRALMKYRSQKLGVVEDFRALGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 -------SVKREKSGAVVDARC 133
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 78/126 (61%), Gaps = 10/126 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR++L
Sbjct: 634 ARL-EFLRENYRIRENDFLSFDALRHAAQCLGRVLRGKDDYGVMVLADRRFQK--KRNQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + ++ TNLST+ AV +K +L+ MAQPF +D G++ SL+ L K H +
Sbjct: 691 PKWISQAMLESETNLSTDMAVATAKSFLKSMAQPFKAKDQEGISTWSLEDL--KHHLEKQ 748
Query: 936 EEEVPR 941
++E+ +
Sbjct: 749 KQEIEK 754
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 52/74 (70%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG +L++ + PDGVV FF SYLY+ES+++ W GI+D++
Sbjct: 503 ISSSFQIRNDPGVVRNYGNMLLEFCRITPDGVVVFFPSYLYMESIISMWQGMGILDSVWN 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ +S
Sbjct: 563 YKLILVETPDSQES 576
>gi|68471265|ref|XP_720409.1| hypothetical protein CaO19.7119 [Candida albicans SC5314]
gi|77022390|ref|XP_888639.1| hypothetical protein CaO19_7119 [Candida albicans SC5314]
gi|46442275|gb|EAL01566.1| hypothetical protein CaO19.7119 [Candida albicans SC5314]
gi|76573452|dbj|BAE44536.1| hypothetical protein [Candida albicans]
Length = 765
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 221/509 (43%), Positives = 303/509 (59%), Gaps = 82/509 (16%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP----VCDFYEKFDAVGREAPLAPGVYS 56
+SKER G +VD +C +T+ ++++ + G +P +C F+EK + + PGVYS
Sbjct: 120 ISKERKGVVVDEKCRRITNGQLKEKIEKG--VPTEDSLCSFHEKLYDLEPHNLVPPGVYS 177
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
L + +E G CPYF R+ I I++YSYHYLLDPKIA VS+EL++ S+V+FDEA
Sbjct: 178 FDALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEA 237
Query: 117 HNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQ 176
HNIDNVC++SLS+ + T++KA L +++MK DS KL+ EY +LVEGLR A+
Sbjct: 238 HNIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAE 297
Query: 177 SARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPAT 236
AR+ ++ +ANPVLP ++L E +PGNIR EHF+ FLKRFIEYLKTR++V V+ E+P +
Sbjct: 298 IARDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTS 357
Query: 237 FLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPL 296
FL +HLK IERKPL
Sbjct: 358 FL-----------------------QHLK---------------------ELTYIERKPL 373
Query: 297 RFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPV 356
RFC+ERL+ L+RTLE+T + DF++L I ATLVS+Y GF +I+EP+ + TVPNP+
Sbjct: 374 RFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLILEPYETEGSTVPNPI 433
Query: 357 LYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLP 416
L+F CLD+S+AIKPVFDRF +V+ITSGT+SPLDMYPK+L F+ VI S++MTLAR LP
Sbjct: 434 LHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVIQESYAMTLARRSFLP 493
Query: 417 M----------------------VRENYAMGLMI-------DDLPVFFPYEYIYPEQYAY 447
M V NY L+I D + VFFP Y+Y E
Sbjct: 494 MIVTKGSDQVSISSRFEIRNDPSVVRNYG-SLLIEFAKITPDGMVVFFP-SYLYMESIIS 551
Query: 448 MVELKKALD-AKGHCLLEMPSGTGKTTSL 475
M + LD H L+ + + + TSL
Sbjct: 552 MWQSMGVLDEVWKHKLILVETPDAQETSL 580
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 90/200 (45%), Positives = 134/200 (67%), Gaps = 6/200 (3%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP----VCDFYEKFDAVGREAPLAPGVY 710
++SKER G +VD +C +T+ ++++ + G +P +C F+EK + + PGVY
Sbjct: 119 TISKERKGVVVDEKCRRITNGQLKEKIEKG--VPTEDSLCSFHEKLYDLEPHNLVPPGVY 176
Query: 711 SITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDE 770
S L + +E G CPYF R+ I I++YSYHYLLDPKIA VS+EL++ S+V+FDE
Sbjct: 177 SFDALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDE 236
Query: 771 AHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDA 830
AHNIDNVC++SLS+ + T++KA L +++MK DS KL+ EY +LVEGLR A
Sbjct: 237 AHNIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQA 296
Query: 831 QSARETDVVLANPVLPDEIL 850
+ AR+ ++ +ANPVLP ++L
Sbjct: 297 EIARDQELFMANPVLPQDLL 316
Score = 136 bits (342), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 103/165 (62%), Gaps = 11/165 (6%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQY+YM ++KK LD G+C+LEMPSGTGKT SLLSL VAY
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSE 542
+P + K++YCSRT+ EIEK + EL +L ++ E+ + GL L+SRKNLC+H
Sbjct: 61 MHYP-EHRKIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPT 119
Query: 543 F-ETRDDISV------IRNYGQLLVDIACVVP-DGVVCFFTSYLY 579
+ R + V I N GQL I VP + +C F LY
Sbjct: 120 ISKERKGVVVDEKCRRITN-GQLKEKIEKGVPTEDSLCSFHEKLY 163
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D SV+RNYG LL++ A + PDG+V FF SYLY+ES+++ W G++D + K
Sbjct: 505 ISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLYMESIISMWQSMGVLDEVWK 564
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 565 HKLILVETPDAQETSLALETYRKACSNGRGAVLLSVA---RGKVSEGI 609
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 58/76 (76%), Gaps = 2/76 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYGIM+ AD+RFAR K+++LPKWI + L D+ TNLST+ A+ +K++LR +AQ
Sbjct: 668 VLRGKDDYGIMVLADRRFAR--KKNQLPKWIAQALNDSDTNLSTDMALATAKKFLRSLAQ 725
Query: 909 PFTREDMLGVALLSLD 924
P +D GV++ +++
Sbjct: 726 PTNPKDSEGVSIWNIE 741
>gi|302771019|ref|XP_002968928.1| hypothetical protein SELMODRAFT_91042 [Selaginella moellendorffii]
gi|300163433|gb|EFJ30044.1| hypothetical protein SELMODRAFT_91042 [Selaginella moellendorffii]
Length = 768
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/433 (45%), Positives = 271/433 (62%), Gaps = 49/433 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS E + VD C LT+S VR + +I C FY+ ++ G E PL PGVY++ L
Sbjct: 121 VSGETSRESVDAGCRKLTASWVRAAAETNLDIETCSFYQGYEKQGSEQPLPPGVYTLHDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ GR+ G CPYFLARQ I A +VVY+Y YLLDPK++ ++SKE+ + +VVFDEAHNID
Sbjct: 181 RVYGRQRGWCPYFLARQMIQFANVVVYNYQYLLDPKVSGIISKEMQKECIVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+++LSV + + ++ A NI L + KE D+ +LR+EY RLVEGL +
Sbjct: 241 NVCIEALSVNLRQNNLDGASRNIHKLNQIISRFKETDANRLRQEYNRLVEGLAQQGNLHG 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+D LANPVLP++IL+E VPGNIR AEHFV FL+R ++YL+ RL VV+E P +F
Sbjct: 301 SDNWLANPVLPEDILREAVPGNIRRAEHFVAFLQRAVQYLRERLDTDTVVKEGPVSFTTT 360
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+S+ +++K L+FC
Sbjct: 361 MSTAAG--------------------------------------------LDQKALKFCY 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
+RL SLL TLE+T + +F + + + TLV +YT+GF+II+EP+ ++ P +P+PVL
Sbjct: 377 DRLHSLLLTLEVTEIDEFLHVQTVCNFLTLVGTYTRGFSIIIEPYDERMPHIPDPVLQLS 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMVRE 420
CLD+SLAIKPVFDRFQ+VVITSGTLSP+D+YP++LNF PVI+HSF+MTL R CL PM+
Sbjct: 437 CLDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFNPVIIHSFTMTLTRDCLCPMI-- 494
Query: 421 NYAMGLMIDDLPV 433
+ D LPV
Sbjct: 495 ---LARGSDQLPV 504
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/234 (43%), Positives = 142/234 (60%), Gaps = 7/234 (2%)
Query: 618 YLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSV 677
+LY E + S + + L RK L I VS E + VD C LT+S V
Sbjct: 90 HLYQEKEIGSSRAKILALGLSSRKNLCIHP-------VVSGETSRESVDAGCRKLTASWV 142
Query: 678 RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHA 737
R + +I C FY+ ++ G E PL PGVY++ L+ GR+ G CPYFLARQ I A
Sbjct: 143 RAAAETNLDIETCSFYQGYEKQGSEQPLPPGVYTLHDLRVYGRQRGWCPYFLARQMIQFA 202
Query: 738 KIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN 797
+VVY+Y YLLDPK++ ++SKE+ + +VVFDEAHNIDNVC+++LSV + + ++ A N
Sbjct: 203 NVVVYNYQYLLDPKVSGIISKEMQKECIVVFDEAHNIDNVCIEALSVNLRQNNLDGASRN 262
Query: 798 IQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
I L + KE D+ +LR+EY RLVEGL + +D LANPVLP++IL+
Sbjct: 263 IHKLNQIISRFKETDANRLRQEYNRLVEGLAQQGNLHGSDNWLANPVLPEDILR 316
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 90/119 (75%), Gaps = 3/119 (2%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M +I+ L V+FPYE+IY EQYAYMVELK ALDA+GHCLLEMP+GTGKT +LLSLI +Y
Sbjct: 1 MKFVIEGLTVYFPYEFIYREQYAYMVELKHALDARGHCLLEMPTGTGKTITLLSLITSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH--NEEINMTGLVLSSRKNLCIH 540
A+P + KL+YC+RTV E+EKV++EL RL Y K + + L LSSRKNLCIH
Sbjct: 61 LANP-SLAKLIYCTRTVHEMEKVLDELRRLHLYQEKEIGSSRAKILALGLSSRKNLCIH 118
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 578 LYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNL 637
L + S F+ R D V+RNYG+LL+++ VPDGVVCFF SY Y++ ++ SW + GI+ +
Sbjct: 502 LPVSSKFDMRSDPGVVRNYGRLLLEMVATVPDGVVCFFVSYSYMDGIINSWNEMGILQEV 561
Query: 638 QKRKLLFIETQDALDS 653
+ KL+FIETQD +++
Sbjct: 562 MQHKLVFIETQDYVET 577
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 47/61 (77%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+MIFADKR+ +KR+KLP+WIQ L + NLST+ AV +++ +LR+MAQ
Sbjct: 683 VIRSKADYGMMIFADKRYNLPNKRNKLPQWIQSQLREEHLNLSTDMAVHIAREFLRRMAQ 742
Query: 909 P 909
P
Sbjct: 743 P 743
>gi|50556538|ref|XP_505677.1| YALI0F20746p [Yarrowia lipolytica]
gi|49651547|emb|CAG78486.1| YALI0F20746p [Yarrowia lipolytica CLIB122]
Length = 785
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/485 (42%), Positives = 292/485 (60%), Gaps = 75/485 (15%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V E+ G IVD +C ++TS + + AGE++ +C+++E + + + PGV++ +
Sbjct: 120 VRYEKKGYIVDEKCRAMTSGIAKQKLAAGEDVTLCEYHENMNDIEPHNYIPPGVFTFEDI 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF R+ + +++YSYHYLLDPKIA+ VSKEL++ +V+FDEAHNID
Sbjct: 180 LAYGEEHKTCPYFTVRRMMAFCNVIIYSYHYLLDPKIADRVSKELSKDCIVIFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+++LSV I ++++A L + E + +DS KL+ EY +LV+GLRD +S +
Sbjct: 240 NVCIEALSVDITEDSLKRATRGANHLAKKVSEARSSDSEKLKNEYNKLVDGLRDLESGEQ 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D LANPVLP++++ E VPGNIR AEHFV FLKRFIEYLK+R++V V+ E+PA+FLK
Sbjct: 300 EDTFLANPVLPEDLISEAVPGNIRKAEHFVAFLKRFIEYLKSRMKVLHVISETPASFLK- 358
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L+D++ IERKPLRFCA
Sbjct: 359 ----------------------------------------HLRDLTY---IERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+ L+RTLE+T++ D+++L I ATLVS+Y GF +I+EPF TVPNP+L+
Sbjct: 376 ERLSYLVRTLELTHVDDYTALKEIAVFATLVSTYDTGFQLILEPFETDQATVPNPILHLT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM--- 417
CLD+S+AIKPVFDRF +++ITSGT+SPLDMYPK+LNF+ V+ S++MTLAR P+
Sbjct: 436 CLDASIAIKPVFDRFSSIIITSGTISPLDMYPKMLNFETVVQESYTMTLARRAFCPLIVT 495
Query: 418 -------------------VRENYAMGLMI-------DDLPVFFPYEYIYPEQYAYMVEL 451
V NY L+I D L VFFP Y+Y E M +
Sbjct: 496 KGSDQVAISSRFEIRNDPSVVRNYG-NLLIEFSKITPDGLVVFFP-SYLYMESIISMWQT 553
Query: 452 KKALD 456
LD
Sbjct: 554 MGILD 558
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 129/196 (65%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
+V E+ G IVD +C ++TS + + AGE++ +C+++E + + + PGV++
Sbjct: 119 NVRYEKKGYIVDEKCRAMTSGIAKQKLAAGEDVTLCEYHENMNDIEPHNYIPPGVFTFED 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ G E CPYF R+ + +++YSYHYLLDPKIA+ VSKEL++ +V+FDEAHNI
Sbjct: 179 ILAYGEEHKTCPYFTVRRMMAFCNVIIYSYHYLLDPKIADRVSKELSKDCIVIFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC+++LSV I ++++A L + E + +DS KL+ EY +LV+GLRD +S
Sbjct: 239 DNVCIEALSVDITEDSLKRATRGANHLAKKVSEARSSDSEKLKNEYNKLVDGLRDLESGE 298
Query: 835 ETDVVLANPVLPDEIL 850
+ D LANPVLP++++
Sbjct: 299 QEDTFLANPVLPEDLI 314
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/118 (55%), Positives = 83/118 (70%), Gaps = 2/118 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV +PY IYPEQYAYM ++KK LD G+C+LEMPSGTGKT SLLSL VAY
Sbjct: 1 MKFYIDDLPVLWPYPRIYPEQYAYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL L + + E + GL L+SRKNLC++
Sbjct: 61 QHYP-EHRKIIYCSRTMSEIEKALAELKNLMKFRTETLGFEEDFRGLGLTSRKNLCLN 117
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 78/120 (65%), Gaps = 8/120 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GK DYG+M+ AD+RFA+ KR++L
Sbjct: 634 ARL-EFLRDNYHIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFAK--KRNQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + D TNLST+ A+ +K++LR MAQP +ED GV++ SL+QL E + ++ +
Sbjct: 691 PKWINQAILDADTNLSTDMALAAAKKFLRTMAQPMNKEDQEGVSVWSLEQLQEYQGSKKD 750
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 54/74 (72%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D SV+RNYG LL++ + + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 503 ISSRFEIRNDPSVVRNYGNLLIEFSKITPDGLVVFFPSYLYMESIISMWQTMGILDEVWK 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 563 YKLILVETPDAQET 576
>gi|353227556|emb|CCA78059.1| probable RAD3-DNA helicase/ATPase [Piriformospora indica DSM 11827]
Length = 798
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/419 (45%), Positives = 279/419 (66%), Gaps = 45/419 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITK 59
VS E+ G +VD +C LTS++ ++ +A ++P+CD++E + + + + PG+ ++
Sbjct: 126 VSTEKKGHVVDAKCRDLTSAAACEKGRANPGSVPLCDWHEGLNDMEPGSLVPPGILTLAD 185
Query: 60 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
L E GR CPYF R+ + +++YS+HYLLDPK+A VSK+L++ ++VVFDEAHNI
Sbjct: 186 LMERGRRTTTCPYFTIRRMMPFVDVIIYSFHYLLDPKVAEQVSKDLSKDAIVVFDEAHNI 245
Query: 120 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 179
DNVC++SLS+ + R ++ AV ++ L ++E+K D++KL++EYA+LV+GL+DA +
Sbjct: 246 DNVCIESLSIDLTRPMLDSAVRSVTKLGEKVEEIKLTDASKLQDEYAKLVQGLQDADADD 305
Query: 180 ETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLK 239
D +++NPVLP+++L+E +PGNIR AEHFV FLKRF+EYLKTR+RV VV E+PA+FL+
Sbjct: 306 NEDPIVSNPVLPEDLLKEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAETPASFLQ 365
Query: 240 DISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFC 299
LKDI+ IE++PLRFC
Sbjct: 366 -----------------------------------------HLKDITY---IEKRPLRFC 381
Query: 300 AERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYF 359
AERL SL+RTLE+T L ++ SL + ATLV++Y KGF +I+EPF TVPNP+ +
Sbjct: 382 AERLQSLIRTLELTGLDEYYSLQKVASFATLVATYEKGFLLILEPFETDNATVPNPIFHL 441
Query: 360 CCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD S AIKP+F+RF +VVITSGT+SPLDMYPK+L F PV+ ++ MTL R C LP+V
Sbjct: 442 ICLDPSFAIKPIFERFSSVVITSGTISPLDMYPKMLQFTPVVQETYPMTLTRNCFLPLV 500
Score = 182 bits (462), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 139/197 (70%), Gaps = 1/197 (0%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITK 714
VS E+ G +VD +C LTS++ ++ +A ++P+CD++E + + + + PG+ ++
Sbjct: 126 VSTEKKGHVVDAKCRDLTSAAACEKGRANPGSVPLCDWHEGLNDMEPGSLVPPGILTLAD 185
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L E GR CPYF R+ + +++YS+HYLLDPK+A VSK+L++ ++VVFDEAHNI
Sbjct: 186 LMERGRRTTTCPYFTIRRMMPFVDVIIYSFHYLLDPKVAEQVSKDLSKDAIVVFDEAHNI 245
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + R ++ AV ++ L ++E+K D++KL++EYA+LV+GL+DA +
Sbjct: 246 DNVCIESLSIDLTRPMLDSAVRSVTKLGEKVEEIKLTDASKLQDEYAKLVQGLQDADADD 305
Query: 835 ETDVVLANPVLPDEILQ 851
D +++NPVLP+++L+
Sbjct: 306 NEDPIVSNPVLPEDLLK 322
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 89/129 (68%), Gaps = 8/129 (6%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID+LPV FPY+ IYPEQY YM +LK+ LDA GHC+LEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFEIDNLPVVFPYDKIYPEQYKYMCDLKRTLDASGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNE-------EINMTGLVLSSRKN 536
P KL+YCSRTVPEIEK + EL RL Y I+ E E TGL L+SR+N
Sbjct: 61 QFFPTK-RKLIYCSRTVPEIEKALTELKRLMKYRIESAETDEQREKERAFTGLGLTSRRN 119
Query: 537 LCIHSEFET 545
LC+H + T
Sbjct: 120 LCLHPQVST 128
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 82/123 (66%), Gaps = 7/123 (5%)
Query: 821 ARLVEGLRDAQSARET-----DVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE+ D + +L+GKTD+G+M+FAD+RFARSDKRSKL
Sbjct: 639 ARL-EYLRDTYRIRESEFLGFDAMRNAAQCVGRVLRGKTDWGLMVFADRRFARSDKRSKL 697
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI +Y+T+N +NLST+ A+ LSK ++R ++Q GV+L +L+ +L KE RA+
Sbjct: 698 PKWINQYITENASNLSTDMAIVLSKSFMRTISQNTNENLQTGVSLWTLEDVL-KEQIRAK 756
Query: 936 EEE 938
+ E
Sbjct: 757 QLE 759
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 89/152 (58%), Gaps = 10/152 (6%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C +P V+ + + + S FE R+D +V+RN+G +L++ + +VPDGVV FF SYLY+ES
Sbjct: 495 CFLP-LVITRGSDQVAISSQFEVRNDPAVVRNFGSILIEYSKIVPDGVVAFFPSYLYMES 553
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKA 683
+VA+W D GI++++ K KL+F+ET DA ++ + +GR L S + R K
Sbjct: 554 IVAAWNDMGILEDVWKHKLIFVETPDANETSIALENYRRACNNGRGAVLLSVA---RGKV 610
Query: 684 GENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
E I DF + GR + P Y+ +++
Sbjct: 611 SEGI---DFDHNY---GRAVIMVPYQYTESRI 636
>gi|395333451|gb|EJF65828.1| DNA repair helicase [Dichomitus squalens LYAD-421 SS1]
Length = 796
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 198/420 (47%), Positives = 280/420 (66%), Gaps = 49/420 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKE+ GK+VD RC LT+S+V + R G ++ +CD++E + + PG++++
Sbjct: 126 VSKEKKGKVVDARCRDLTNSAVCTKGRENPG-SVELCDWHENLGKLEPGNLIPPGIWTLA 184
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+ + GRE +CPYFL R+ + +++YS+HYLLDPK+A VSKEL + ++VVFDEAHN
Sbjct: 185 DVLQHGRENKICPYFLVRRMMPFVDVIIYSFHYLLDPKVAEQVSKELTKDAIVVFDEAHN 244
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + R ++ A ++ L + E+K+ D++KL++EYA+LVEGL++A +
Sbjct: 245 IDNVCIESLSIDLTRPMLDSAARSVVKLGDKIDEIKKTDASKLQDEYAKLVEGLQEA--S 302
Query: 179 RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL 238
+ D ++NPVLP+++L+E +PGNIR AEHFV FLKRF+EYLKTR+RV VV E+P +FL
Sbjct: 303 NDEDAFVSNPVLPEDLLKEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAETPLSFL 362
Query: 239 KDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRF 298
+ LKDI+ IER+PLRF
Sbjct: 363 Q-----------------------------------------HLKDITY---IERRPLRF 378
Query: 299 CAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLY 358
CAERL SL+RTLE++ L + SSL + ATLV++Y KGF +I+EPF TVPNP+ +
Sbjct: 379 CAERLQSLVRTLELSRLDELSSLQKVASFATLVATYEKGFLLILEPFETDNATVPNPIFH 438
Query: 359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD S+AIKPVF+RF +VVITSGTLSPLDMYPK+L F PV+ ++SMTL R LP+V
Sbjct: 439 LTCLDPSIAIKPVFERFSSVVITSGTLSPLDMYPKMLQFTPVVQETYSMTLTRNSFLPLV 498
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/198 (42%), Positives = 140/198 (70%), Gaps = 5/198 (2%)
Query: 656 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
VSKE+ GK+VD RC LT+S+V + R G ++ +CD++E + + PG++++
Sbjct: 126 VSKEKKGKVVDARCRDLTNSAVCTKGRENPG-SVELCDWHENLGKLEPGNLIPPGIWTLA 184
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
+ + GRE +CPYFL R+ + +++YS+HYLLDPK+A VSKEL + ++VVFDEAHN
Sbjct: 185 DVLQHGRENKICPYFLVRRMMPFVDVIIYSFHYLLDPKVAEQVSKELTKDAIVVFDEAHN 244
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC++SLS+ + R ++ A ++ L + E+K+ D++KL++EYA+LVEGL++A +
Sbjct: 245 IDNVCIESLSIDLTRPMLDSAARSVVKLGDKIDEIKKTDASKLQDEYAKLVEGLQEA--S 302
Query: 834 RETDVVLANPVLPDEILQ 851
+ D ++NPVLP+++L+
Sbjct: 303 NDEDAFVSNPVLPEDLLK 320
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/126 (61%), Positives = 90/126 (71%), Gaps = 8/126 (6%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLP+ FPY+ IYPEQYAYM +LK+ LDA GHCLLEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFFIDDLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCLLEMPSGTGKTVSLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYI-------KHNEEINMTGLVLSSRKN 536
+P KL+YCSRTVPEIEK + EL RL DY + +E N G+ L+SRKN
Sbjct: 61 QFYPTK-RKLIYCSRTVPEIEKALSELQRLMDYRRDCAETDEQREKEKNFYGIGLTSRKN 119
Query: 537 LCIHSE 542
LCIH E
Sbjct: 120 LCIHPE 125
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 86/124 (69%), Gaps = 10/124 (8%)
Query: 821 ARLVEGLRDAQSARET-----DVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRDA RE+ D + +L+GKTD+G+M+FADKRFAR+DKR+KL
Sbjct: 639 ARL-EYLRDAYRIRESEFLGFDAMRNAAQCVGRVLRGKTDWGLMVFADKRFARADKRAKL 697
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
P+WI +Y+T+ +NLST+ A+ LSK+++R ++Q E+ G++L +L+ + E A+A+
Sbjct: 698 PRWINQYITETASNLSTDMALTLSKQFMRMISQN-PNENQTGISLWTLEDI---EKAQAK 753
Query: 936 EEEV 939
++E+
Sbjct: 754 QKEL 757
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 72/109 (66%), Gaps = 5/109 (4%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +L++ + +VPDG+V FF SYLY+ES+VA+W D GI++ + K
Sbjct: 508 ISSRFEVRNDPAVVRNFGSILIEYSKIVPDGIVAFFPSYLYMESIVAAWNDMGILNEVWK 567
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENI 687
KL+F+ET DA + S++ E + D GR L S + R K E I
Sbjct: 568 HKLIFVETPDA-NETSIALENYRRACDNGRGAVLLSVA---RGKVSEGI 612
>gi|156047833|ref|XP_001589884.1| hypothetical protein SS1G_09606 [Sclerotinia sclerotiorum 1980]
gi|154694001|gb|EDN93739.1| hypothetical protein SS1G_09606 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 616
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/444 (45%), Positives = 284/444 (63%), Gaps = 63/444 (14%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++PVC ++E D + + GV+++ +
Sbjct: 92 VKREKSGAVVDARCRSLTAGFVKEKKERGEDVPVCVYHENLDLLEPHNLIPNGVWTLDGI 151
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G + CPYF +R+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNID
Sbjct: 152 MRYGEDHKQCPYFTSRRMMSFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 211
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I ++ KA LE + +++++DS KL++EYA+LVEGLR A AR
Sbjct: 212 NVCIESLSTDITDDSLRKATRGAINLENKISDLRDSDSEKLKDEYAKLVEGLRGADEARA 271
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYL-KTRLRVQQVVQESPATFLK 239
D ++NP LPD++L+E VPGNIR AEHFV FLKRFIEYL KTR++V+QV+ E+PA+FL
Sbjct: 272 EDAFMSNPALPDDLLKEAVPGNIRRAEHFVTFLKRFIEYLKKTRMKVRQVISETPASFLA 331
Query: 240 DISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFC 299
+ EH TF IE+KPLRFC
Sbjct: 332 HL-------------------REH----------------TF---------IEKKPLRFC 347
Query: 300 AERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYF 359
AERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EP+ VPNPVL+F
Sbjct: 348 AERLTSLVRTLELTNIEDYQPLQEVATFATLVATYEKGFLLILEPYESDTAEVPNPVLHF 407
Query: 360 CCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMVR 419
CLD+++AIKPVF+RF +V+ITSGT+SPL+MYPK+L+F+ V+ S+ MTLAR ++
Sbjct: 408 TCLDAAIAIKPVFERFSSVIITSGTISPLEMYPKMLDFECVVQESYPMTLARHGMV---- 463
Query: 420 ENYAMGLMIDDLPVFFPYEYIYPE 443
VFFP Y+Y E
Sbjct: 464 -------------VFFP-SYLYME 473
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 134/197 (68%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++PVC ++E D + + GV+++
Sbjct: 91 SVKREKSGAVVDARCRSLTAGFVKEKKERGEDVPVCVYHENLDLLEPHNLIPNGVWTLDG 150
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ G + CPYF +R+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNI
Sbjct: 151 IMRYGEDHKQCPYFTSRRMMSFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNI 210
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I ++ KA LE + +++++DS KL++EYA+LVEGLR A AR
Sbjct: 211 DNVCIESLSTDITDDSLRKATRGAINLENKISDLRDSDSEKLKDEYAKLVEGLRGADEAR 270
Query: 835 ETDVVLANPVLPDEILQ 851
D ++NP LPD++L+
Sbjct: 271 AEDAFMSNPALPDDLLK 287
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 71/115 (61%), Gaps = 14/115 (12%)
Query: 453 KALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512
+ LDA GHC+LEMPSGTGKT SLLSLIVAY +P + KL+YCSRT+ EIEK + EL
Sbjct: 2 RTLDAGGHCVLEMPSGTGKTISLLSLIVAYQQYYP-EHRKLIYCSRTMSEIEKALAELKA 60
Query: 513 LFDY---YIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
L Y + H E+ GL L+SRKNLC+H SV R +VD C
Sbjct: 61 LMKYRAEQLGHQEDFR--GLGLTSRKNLCLHP--------SVKREKSGAVVDARC 105
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 8/80 (10%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYGIM+ AD+RF + KR++L
Sbjct: 530 ARL-EFLRETYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFLK--KRAQL 586
Query: 876 PKWIQEYLTDNLTNLSTEEA 895
PKWI + + D+ NLST+ A
Sbjct: 587 PKWINQAILDSEVNLSTDMA 606
>gi|326480373|gb|EGE04383.1| DNA repair helicase RAD3 [Trichophyton equinum CBS 127.97]
Length = 770
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 198/418 (47%), Positives = 276/418 (66%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ ++++ + GE++ +C ++E D + + PGV+++ L
Sbjct: 120 VKREKSGAVVDARCRSLTAGFIKEKKEKGEDVELCIYHENLDLLEPSNLVPPGVFTLDGL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF AR+ + + +++YSYHYLLDPKIA VSKEL+R S++VFDEAHNID
Sbjct: 180 LKYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA LE + +MK +D+ KL+ EY +LVEGLR+A ARE
Sbjct: 240 NVCIESLSIDLTEDSLRKASRGANNLERKIDDMKSSDADKLQSEYQKLVEGLREADEARE 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ ++ANPVLPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V + E+P +FL
Sbjct: 300 EEQLMANPVLPDDLLKESVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPLSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ LKD++ IERKPLRFCA
Sbjct: 358 ---------------------------------------SHLKDLT---FIERKPLRFCA 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ D+ L + ATL ++Y GF +I+EPF TVPNP+L+F
Sbjct: 376 ERLTSLVRTLELVNIEDYQPLQEVATFATLAATYEIGFLLILEPFESDTATVPNPILHFT 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGTLSPL+MYPK+L F + S+SMTLAR LPM+
Sbjct: 436 CLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFDAALQESYSMTLARRSFLPMI 493
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 139/197 (70%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ ++++ + GE++ +C ++E D + + PGV+++
Sbjct: 119 SVKREKSGAVVDARCRSLTAGFIKEKKEKGEDVELCIYHENLDLLEPSNLVPPGVFTLDG 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L + G + CPYF AR+ + + +++YSYHYLLDPKIA VSKEL+R S++VFDEAHNI
Sbjct: 179 LLKYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKELSRDSIIVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA LE + +MK +D+ KL+ EY +LVEGLR+A AR
Sbjct: 239 DNVCIESLSIDLTEDSLRKASRGANNLERKIDDMKSSDADKLQSEYQKLVEGLREADEAR 298
Query: 835 ETDVVLANPVLPDEILQ 851
E + ++ANPVLPD++L+
Sbjct: 299 EEEQLMANPVLPDDLLK 315
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 91/142 (64%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLP+ FPY IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT +LL+LIVAY
Sbjct: 1 MEFFIDDLPILFPYPRIYPEQYAYMCDLKKVLDAGGHCVLEMPSGTGKTITLLALIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRT+ EIEK + EL L Y + + + L L+SRKNLC+H
Sbjct: 61 QHYP-EHRKLIYCSRTMSEIEKALSELRALMKYRSQKLGVVEDFRALGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 -------SVKREKSGAVVDARC 133
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 78/126 (61%), Gaps = 10/126 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR++L
Sbjct: 615 ARL-EFLRENYRIRENDFLSFDALRHAAQCLGRVLRGKDDYGVMVLADRRFQK--KRNQL 671
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + ++ TNLST+ AV +K +L+ MAQPF +D G++ SL+ L K H +
Sbjct: 672 PKWISQAMLESETNLSTDMAVATAKSFLKSMAQPFKAKDQEGISTWSLEDL--KRHLEKQ 729
Query: 936 EEEVPR 941
++EV +
Sbjct: 730 KQEVEK 735
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 52/74 (70%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG +L++ + PDGVV FF SYLY+ES+++ W GI+D++
Sbjct: 503 ISSSFQIRNDPGVVRNYGNMLLEFCRITPDGVVVFFPSYLYMESIISMWQGMGILDSVWN 562
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ +S
Sbjct: 563 YKLILVETPDSQES 576
>gi|154296465|ref|XP_001548663.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
Length = 764
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/419 (47%), Positives = 272/419 (64%), Gaps = 51/419 (12%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++P D E + + GV+++ +
Sbjct: 92 VKREKSGAVVDARCRSLTAGFVKEKKERGEDVPNLDLLEPHNLI------PNGVWTLDGI 145
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF +R+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNID
Sbjct: 146 MRYGEEHKQCPYFTSRRMMSFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 205
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I ++ +A LE + +++++DS KL++EYA+LVEGLR A AR
Sbjct: 206 NVCIESLSTDITDDSLRRATRGAMNLESRISDLRDSDSEKLKDEYAKLVEGLRGADEARA 265
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYL-KTRLRVQQVVQESPATFLK 239
D ++NP LPD++L+E VPGNIR AEHFV FLKRFIEYL KTR++V+QV+ E+PA+FL
Sbjct: 266 EDAFMSNPALPDDLLKEAVPGNIRRAEHFVVFLKRFIEYLKKTRMKVRQVISETPASFLA 325
Query: 240 DISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFC 299
HLK IE+KPLRFC
Sbjct: 326 -----------------------HLK---------------------EYTYIEKKPLRFC 341
Query: 300 AERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYF 359
AERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EP+ VPNPVL+F
Sbjct: 342 AERLTSLVRTLELTNIEDYQPLQEVATFATLVATYEKGFLLILEPYESDTAEVPNPVLHF 401
Query: 360 CCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVF+RF +V+ITSGT+SPL+MYPK+LNF+ V+ S+ MTLAR LPM+
Sbjct: 402 TCLDAAIAIKPVFERFSSVIITSGTISPLEMYPKMLNFECVVQESYPMTLARRSFLPMI 460
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 130/197 (65%), Gaps = 6/197 (3%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++P D E + + GV+++
Sbjct: 91 SVKREKSGAVVDARCRSLTAGFVKEKKERGEDVPNLDLLEPHNLI------PNGVWTLDG 144
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ G E CPYF +R+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNI
Sbjct: 145 IMRYGEEHKQCPYFTSRRMMSFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNI 204
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I ++ +A LE + +++++DS KL++EYA+LVEGLR A AR
Sbjct: 205 DNVCIESLSTDITDDSLRRATRGAMNLESRISDLRDSDSEKLKDEYAKLVEGLRGADEAR 264
Query: 835 ETDVVLANPVLPDEILQ 851
D ++NP LPD++L+
Sbjct: 265 AEDAFMSNPALPDDLLK 281
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 71/115 (61%), Gaps = 14/115 (12%)
Query: 453 KALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512
+ LDA GHC+LEMPSGTGKT SLLSLIVAY +P + KL+YCSRT+ EIEK + EL
Sbjct: 2 RTLDAGGHCVLEMPSGTGKTISLLSLIVAYQQYYP-EHRKLIYCSRTMSEIEKALAELKA 60
Query: 513 LFDY---YIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
L Y + H E+ GL L+SRKNLC+H SV R +VD C
Sbjct: 61 LMKYRAEQLGHQEDFR--GLGLTSRKNLCLHP--------SVKREKSGAVVDARC 105
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 9/122 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYGIM+ AD+RF + KR++L
Sbjct: 601 ARL-EFLRETYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFLK--KRTQL 657
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + D+ NLST+ AV +K++LR MAQPF +D G++ SL Q LEK +
Sbjct: 658 PKWINQAILDSEVNLSTDMAVGSAKKFLRNMAQPFKAKDQEGISTWSL-QDLEKFKEKQY 716
Query: 936 EE 937
EE
Sbjct: 717 EE 718
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 54/74 (72%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R++ +V+RNYG LL +++ + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 470 ISSGFQVRNEPAVVRNYGNLLTEMSKLTPDGMVVFFPSYLYMESIISMWQGMGILDEVWK 529
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 530 YKLILVETPDAQET 543
>gi|255731468|ref|XP_002550658.1| DNA repair helicase RAD3 [Candida tropicalis MYA-3404]
gi|240131667|gb|EER31226.1| DNA repair helicase RAD3 [Candida tropicalis MYA-3404]
Length = 781
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/429 (45%), Positives = 274/429 (63%), Gaps = 55/429 (12%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAG-----------ENIPVCDFYEKFDAVGREAP 49
+SKER G +VD +C +T+ ++ + + G E +C ++EK
Sbjct: 120 ISKERKGVVVDEKCRRITNGQLKSKIEKGIVTEEDQLLNPETNSLCSYHEKLYDYEPHNL 179
Query: 50 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 109
+ PGVYS L ++ G CPYF R+ I I++YSYHYLLDPKIA VSKEL++ S
Sbjct: 180 IPPGVYSFDALLRYCKDEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSKELSKDS 239
Query: 110 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 169
+++FDEAHNIDNVC++SLS+ + T+++A L ++EMK DS KL+ EY +LV
Sbjct: 240 IIIFDEAHNIDNVCIESLSLDLTEDTLKRATRGANKLGEAIEEMKSQDSEKLQNEYEQLV 299
Query: 170 EGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQV 229
EGLR A+ AR+ ++ +ANPVLP ++L E +PGNIR EHF+ FLKRF+EYLKTR++V V
Sbjct: 300 EGLRQAEIARDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFVEYLKTRMKVLHV 359
Query: 230 VQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKV 289
+ E+P +FL+ LKD++
Sbjct: 360 ISETPTSFLQH-----------------------------------------LKDLTY-- 376
Query: 290 CIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKA 349
IERKPLRFC+ERL+ L+RTLE++ + DF++L I ATLVS+Y GF +I+EP+ +
Sbjct: 377 -IERKPLRFCSERLSLLVRTLELSEVEDFNALKDIATFATLVSTYDTGFQLILEPYETEG 435
Query: 350 PTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTL 409
TVPNP+L+F CLD+S+AIKPVF+RF +V+ITSGT+SPLDMYPK++NFQ VI S+SMTL
Sbjct: 436 STVPNPILHFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPKMMNFQTVIQQSYSMTL 495
Query: 410 ARPCLLPMV 418
AR LPM+
Sbjct: 496 ARRSFLPMI 504
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 130/207 (62%), Gaps = 11/207 (5%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAG-----------ENIPVCDFYEKFDAVGREA 703
++SKER G +VD +C +T+ ++ + + G E +C ++EK
Sbjct: 119 TISKERKGVVVDEKCRRITNGQLKSKIEKGIVTEEDQLLNPETNSLCSYHEKLYDYEPHN 178
Query: 704 PLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARS 763
+ PGVYS L ++ G CPYF R+ I I++YSYHYLLDPKIA VSKEL++
Sbjct: 179 LIPPGVYSFDALLRYCKDEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSKELSKD 238
Query: 764 SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARL 823
S+++FDEAHNIDNVC++SLS+ + T+++A L ++EMK DS KL+ EY +L
Sbjct: 239 SIIIFDEAHNIDNVCIESLSLDLTEDTLKRATRGANKLGEAIEEMKSQDSEKLQNEYEQL 298
Query: 824 VEGLRDAQSARETDVVLANPVLPDEIL 850
VEGLR A+ AR+ ++ +ANPVLP ++L
Sbjct: 299 VEGLRQAEIARDQELFMANPVLPQDLL 325
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/118 (58%), Positives = 85/118 (72%), Gaps = 2/118 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM ++KK LD G+C+LEMPSGTGKT SLLSL VAY
Sbjct: 1 MKFYIDDLPVLFPYPRIYPEQYAYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL +L +Y E+ + GL L+SRKNLC+H
Sbjct: 61 MHYP-EHRKIVYCSRTMSEIEKALIELHKLMEYRANELGEVEDFRGLGLTSRKNLCLH 117
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D SV+RNYG LLV+ A + PDG+V FF SYLY+ES+++ W + G++D + K
Sbjct: 514 ISSRFEIRNDPSVVRNYGSLLVEFAKITPDGMVVFFPSYLYMESIISMWQNMGVLDEVWK 573
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 574 HKLILVETPDAQETSLALETYRKACSNGRGAVLLSVA---RGKVSEGI 618
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 79/124 (63%), Gaps = 8/124 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E +RD S +E D + + + +L+GK DYGIM+ AD+RF+R K+++L
Sbjct: 645 ARL-EFMRDHFSIKENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFSR--KKNQL 701
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + L D+ TNLST+ A+ K++LR +AQP +D GV++ +L+QL E + +
Sbjct: 702 PKWIAQALNDSDTNLSTDMALATGKKFLRSLAQPSNPKDQEGVSVWNLEQLEEYQKQFKK 761
Query: 936 EEEV 939
EEV
Sbjct: 762 VEEV 765
>gi|296423910|ref|XP_002841495.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637735|emb|CAZ85686.1| unnamed protein product [Tuber melanosporum]
Length = 748
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/403 (47%), Positives = 265/403 (65%), Gaps = 44/403 (10%)
Query: 16 SLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLA 75
SLT+ V+++ GE + VC F++ D + + PGVY++ + + G + CPYF A
Sbjct: 148 SLTAGFVKEKKARGEEVEVCVFHDNLDTLEPHNLITPGVYTLDGMLKYGEKHTQCPYFTA 207
Query: 76 RQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRT 135
R+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNIDNVC++SLS+ + +
Sbjct: 208 RRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNIDNVCIESLSIDLTDDS 267
Query: 136 IEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEIL 195
+ +A Q LE + EMK +D+ KL+ EY +LVEGLRD E D +ANPVLP ++L
Sbjct: 268 LRRAARGAQNLEKKINEMKASDAEKLQNEYKKLVEGLRDVDEGTEEDSFMANPVLPKDLL 327
Query: 196 QEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYR 255
+E +PGNIR AEHF+ FLKRF+EYLKTR++V V+ E+PA+FL+
Sbjct: 328 KEAIPGNIRRAEHFLAFLKRFVEYLKTRMKVLHVISETPASFLQH--------------- 372
Query: 256 YIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNL 315
LKD++ IE+KPLRFCAERL SL+RTLE+ N+
Sbjct: 373 --------------------------LKDLT---FIEKKPLRFCAERLTSLVRTLELANI 403
Query: 316 TDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRF 375
D+ SL + ATLV++Y KGF +I+EPF + TVPNP+L+F CLD+S+AI+PVF+RF
Sbjct: 404 EDYKSLQEVAMFATLVATYEKGFLLILEPFESETATVPNPILHFTCLDASIAIRPVFERF 463
Query: 376 QTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
+VVITSGT+SPL+MYPK+L F V+ S+SMTLAR LPM+
Sbjct: 464 SSVVITSGTISPLEMYPKMLQFNTVVQESYSMTLARRSFLPMI 506
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 120/181 (66%)
Query: 671 SLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLA 730
SLT+ V+++ GE + VC F++ D + + PGVY++ + + G + CPYF A
Sbjct: 148 SLTAGFVKEKKARGEEVEVCVFHDNLDTLEPHNLITPGVYTLDGMLKYGEKHTQCPYFTA 207
Query: 731 RQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRT 790
R+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNIDNVC++SLS+ + +
Sbjct: 208 RRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNIDNVCIESLSIDLTDDS 267
Query: 791 IEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEIL 850
+ +A Q LE + EMK +D+ KL+ EY +LVEGLRD E D +ANPVLP ++L
Sbjct: 268 LRRAARGAQNLEKKINEMKASDAEKLQNEYKKLVEGLRDVDEGTEEDSFMANPVLPKDLL 327
Query: 851 Q 851
+
Sbjct: 328 K 328
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 423 AMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
AM ID+L V FPY IYP ++ YM +LK+ LDA GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 42 AMRFKIDELEVLFPYPRIYPGEWRYMTDLKRTLDAGGHCVLEMPSGTGKTVSLLSLIVAY 101
Query: 483 MNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK 519
+ P + KL+YCSRT+ EIEK + EL L Y K
Sbjct: 102 QQSFP-EPRKLIYCSRTMSEIEKALAELKALMAYRSK 137
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
FE R+D SV+RNYG LLV+ + + PDG+V FF SYLY+ES+++ W GI+D + K KL+
Sbjct: 520 FEIRNDPSVVRNYGSLLVEFSKITPDGMVVFFPSYLYMESIISMWQGMGILDEVWKYKLI 579
Query: 644 FIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREA 703
+ET D+ ++ + +GR T+ SV ++ N P DF FDA+ A
Sbjct: 580 LVETPDSQETSLALETYRTACCNGRGAISTTISVELCFESPSNTPKNDFL-SFDAMRHAA 638
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYGIM+ AD+RF + KRS+LPKWI + L ++ NLST+ AV ++K++LR MAQ
Sbjct: 644 VLRGKDDYGIMVLADRRFGK--KRSQLPKWINQALLESDVNLSTDMAVAIAKKFLRTMAQ 701
Query: 909 PFTREDMLGVALLSLDQLLEKEHARAE 935
PF +D G++ SL L E + +E
Sbjct: 702 PFAPKDQEGISTWSLADLEEHQGKGSE 728
>gi|302681585|ref|XP_003030474.1| hypothetical protein SCHCODRAFT_77555 [Schizophyllum commune H4-8]
gi|300104165|gb|EFI95571.1| hypothetical protein SCHCODRAFT_77555 [Schizophyllum commune H4-8]
Length = 792
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/423 (46%), Positives = 283/423 (66%), Gaps = 52/423 (12%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAP---LAPGVYS 56
VSKE+ G +VD RC LT++ V ++ +A ++ +C+++E +G+ P + PG+++
Sbjct: 126 VSKEKKGVVVDARCRDLTNAVVCEKGRADPGSVELCEWHEN---LGQREPGQLIPPGIWT 182
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
+ + + GR+ +CPYFL R+ + +V+YS+HYLLDPK+A+ VSKEL++ ++VVFDEA
Sbjct: 183 LADVLQYGRDNTICPYFLVRRMMPFVDVVIYSFHYLLDPKVADQVSKELSKDAIVVFDEA 242
Query: 117 HNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQ 176
HNIDNVC++SLS+ + R ++ A ++ L ++E+K D+AKL++EYARLVEGL++A
Sbjct: 243 HNIDNVCIESLSIDLTRPMLDSAARSVGKLGEKIEEIKTTDAAKLQDEYARLVEGLQEAS 302
Query: 177 S-ARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPA 235
+ D ++NP+LPD++L E VPGNIR AEHFV FLKRF+EYLKTR+RV VV E+P
Sbjct: 303 DRPDDADGFMSNPLLPDDLLNEAVPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAETPL 362
Query: 236 TFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKP 295
+FL+ LKDI+ IER+P
Sbjct: 363 SFLQ-----------------------------------------HLKDITY---IERRP 378
Query: 296 LRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNP 355
LRFCAERL SL+RTLE++ L ++S+L + ATLVS+Y +GF +I+EPF TVPNP
Sbjct: 379 LRFCAERLQSLIRTLELSRLDEYSALQKVASFATLVSTYERGFILILEPFETDNATVPNP 438
Query: 356 VLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLL 415
+ +F CLD SLAI+PVF+RF +VVITSGT+SPLDMYPK+L F PV+ S+ MTL R L
Sbjct: 439 IFHFACLDPSLAIQPVFERFSSVVITSGTISPLDMYPKMLQFTPVVQESYPMTLTRNSFL 498
Query: 416 PMV 418
P+V
Sbjct: 499 PLV 501
Score = 179 bits (453), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 142/201 (70%), Gaps = 8/201 (3%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAP---LAPGVYS 711
VSKE+ G +VD RC LT++ V ++ +A ++ +C+++E +G+ P + PG+++
Sbjct: 126 VSKEKKGVVVDARCRDLTNAVVCEKGRADPGSVELCEWHEN---LGQREPGQLIPPGIWT 182
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
+ + + GR+ +CPYFL R+ + +V+YS+HYLLDPK+A+ VSKEL++ ++VVFDEA
Sbjct: 183 LADVLQYGRDNTICPYFLVRRMMPFVDVVIYSFHYLLDPKVADQVSKELSKDAIVVFDEA 242
Query: 772 HNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQ 831
HNIDNVC++SLS+ + R ++ A ++ L ++E+K D+AKL++EYARLVEGL++A
Sbjct: 243 HNIDNVCIESLSIDLTRPMLDSAARSVGKLGEKIEEIKTTDAAKLQDEYARLVEGLQEAS 302
Query: 832 S-ARETDVVLANPVLPDEILQ 851
+ D ++NP+LPD++L
Sbjct: 303 DRPDDADGFMSNPLLPDDLLN 323
Score = 155 bits (393), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 102/157 (64%), Gaps = 17/157 (10%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLP+ FPY+ IYPEQYAYM +LK+ LDA GHC+LEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFNIDDLPIVFPYDRIYPEQYAYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNE-------EINMTGLVLSSRKN 536
+P KL+YCSRTVPEIEK + EL RL Y I+ E E TGL L+SRKN
Sbjct: 61 QFYPTK-RKLIYCSRTVPEIEKALAELKRLMAYRIQCAETPEQRAKEEAFTGLGLTSRKN 119
Query: 537 LCIHSEFETRDDISVIRNYGQLLVDIACV-VPDGVVC 572
LCIH E V + ++VD C + + VVC
Sbjct: 120 LCIHPE--------VSKEKKGVVVDARCRDLTNAVVC 148
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 82/124 (66%), Gaps = 8/124 (6%)
Query: 821 ARLVEGLRDAQSARET-----DVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRDA RE+ D + +L+GKTD+G+M+FADKRF RSDKRSKL
Sbjct: 642 ARL-EYLRDAYRIRESEFLSFDAIRNAAQCVGRVLRGKTDWGLMVFADKRFGRSDKRSKL 700
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
P+WI +Y+T+ +NLST+ A+ LSK ++R ++Q E+ G++L +L+ +EK A+ +
Sbjct: 701 PRWINQYITETASNLSTDMAITLSKIFMRTISQN-PNENQTGISLWTLED-IEKAQAKQK 758
Query: 936 EEEV 939
E +
Sbjct: 759 MESM 762
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 71/109 (65%), Gaps = 5/109 (4%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +L++ + +VPDG+V FF SYLY+ES+VA+W D GI++ +
Sbjct: 511 ISSRFEVRNDPAVVRNFGSILIEYSKIVPDGIVAFFPSYLYMESIVAAWNDMGILNEVWN 570
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENI 687
KL+F+ET D+ + S++ E + D GR L S + R K E I
Sbjct: 571 HKLIFVETPDS-NETSIALENYRRACDNGRGAVLLSVA---RGKVSEGI 615
>gi|169853182|ref|XP_001833272.1| transcription factor TFIIH complex subunit Rad15 [Coprinopsis
cinerea okayama7#130]
gi|116505650|gb|EAU88545.1| transcription factor TFIIH complex subunit Rad15 [Coprinopsis
cinerea okayama7#130]
Length = 789
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/420 (46%), Positives = 277/420 (65%), Gaps = 48/420 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
V++E+ G +VD RC LT+++V ++R G ++PVCD++E + + G++++
Sbjct: 126 VAREKKGTVVDARCRDLTNTAVCEKNRENPG-SVPVCDWHENLGKMEPGTLIPQGIWTLE 184
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+ E R+ +CPYF R+ + A IV+YSYHYLLDPK+A VSK++++ ++VVFDEAHN
Sbjct: 185 GVLEYARQKVICPYFAVRRMMGFADIVIYSYHYLLDPKVAEQVSKDISKDAIVVFDEAHN 244
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + R ++ A ++ L + E+K D+AKL+ EYA+LVEGL++A+ +
Sbjct: 245 IDNVCIESLSIDLTRPMLDSAARSVTKLSEKIDEIKTTDAAKLQNEYAKLVEGLQEAEES 304
Query: 179 RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL 238
+TD ++ NPVLPD++L E +PGNIR AEHFV FLKRF+EYLKTR+RV VV E+P +FL
Sbjct: 305 -DTDGIMGNPVLPDDLLHEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVTHVVAETPLSFL 363
Query: 239 KDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRF 298
+ LKDI+ IER+PLRF
Sbjct: 364 Q-----------------------------------------HLKDITY---IERRPLRF 379
Query: 299 CAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLY 358
CAERL SL+RTLE+ L ++SSL + ATLV++Y KGF +I+EP+ TV NP+ +
Sbjct: 380 CAERLQSLVRTLELNRLDEYSSLQKVASFATLVATYEKGFLLILEPYETDTSTVANPIFH 439
Query: 359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD SLAIKPVF+RF +VVITSGT+SPLDMYPK+L F PV+ ++ MTL R LP+V
Sbjct: 440 LTCLDPSLAIKPVFERFSSVVITSGTISPLDMYPKMLQFTPVVQETYPMTLTRNAFLPLV 499
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/198 (42%), Positives = 139/198 (70%), Gaps = 4/198 (2%)
Query: 656 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
V++E+ G +VD RC LT+++V ++R G ++PVCD++E + + G++++
Sbjct: 126 VAREKKGTVVDARCRDLTNTAVCEKNRENPG-SVPVCDWHENLGKMEPGTLIPQGIWTLE 184
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
+ E R+ +CPYF R+ + A IV+YSYHYLLDPK+A VSK++++ ++VVFDEAHN
Sbjct: 185 GVLEYARQKVICPYFAVRRMMGFADIVIYSYHYLLDPKVAEQVSKDISKDAIVVFDEAHN 244
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC++SLS+ + R ++ A ++ L + E+K D+AKL+ EYA+LVEGL++A+ +
Sbjct: 245 IDNVCIESLSIDLTRPMLDSAARSVTKLSEKIDEIKTTDAAKLQNEYAKLVEGLQEAEES 304
Query: 834 RETDVVLANPVLPDEILQ 851
+TD ++ NPVLPD++L
Sbjct: 305 -DTDGIMGNPVLPDDLLH 321
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/148 (54%), Positives = 94/148 (63%), Gaps = 16/148 (10%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID+LP+ FPY+ IYPEQYAYM +LK+ LDA GHC+LEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFYIDNLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-------NMTGLVLSSRKN 536
P KL+YCSRTVPEIEK + EL RL Y I + E N GL L+SRKN
Sbjct: 61 QFFPTR-RKLVYCSRTVPEIEKALTELKRLMKYRIDYAETEEEKEKERNFMGLGLTSRKN 119
Query: 537 LCIHSEFETRDDISVIRNYGQLLVDIAC 564
LCI+ + V R +VD C
Sbjct: 120 LCINPD--------VAREKKGTVVDARC 139
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 82/124 (66%), Gaps = 8/124 (6%)
Query: 821 ARLVEGLRDAQSARET-----DVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRDA RE+ D + +L+GKTD+G+MIFADKRFARSDKRSKL
Sbjct: 640 ARL-EYLRDAYRIRESEFLGFDAMRTAAQCVGRVLRGKTDWGLMIFADKRFARSDKRSKL 698
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
P+WI + +T+ +NLST+ A+ LSK ++R ++Q E+ GV+L +L+ +EK A+ +
Sbjct: 699 PRWINQCITETASNLSTDMALTLSKLFMRTISQN-PNENQTGVSLWTLED-VEKAQAKQK 756
Query: 936 EEEV 939
E+
Sbjct: 757 ALEL 760
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 72/109 (66%), Gaps = 5/109 (4%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +LV+ + +VPDGVV FF SYLY+ES+VA+W D GI++ + K
Sbjct: 509 ISSRFEVRNDPAVVRNFGSILVEYSKIVPDGVVAFFPSYLYMESIVAAWNDMGILNEVWK 568
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENI 687
KL+F+ET DA + S++ E + D GR L S + R K E I
Sbjct: 569 HKLIFVETPDA-NETSIALENYRRACDNGRGAVLLSVA---RGKVSEGI 613
>gi|126140148|ref|XP_001386596.1| DNA helicase component of transcription factor b [Scheffersomyces
stipitis CBS 6054]
gi|126093880|gb|ABN68567.1| DNA helicase component of transcription factor b [Scheffersomyces
stipitis CBS 6054]
Length = 793
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 213/496 (42%), Positives = 293/496 (59%), Gaps = 86/496 (17%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP-----------VCDFYEKFDAVGREAP 49
+S+ER G +VD +C +T+ +++R G P +CD +E + + +
Sbjct: 120 ISQERKGNVVDEKCRRITNGQLKERIAKGLVTPDQEVNHAEANTLCDMHENMNDMDQHNL 179
Query: 50 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 109
+ GVYS L + ++ G CPYF R+ I I++YSYHYLLDPKIA VSKEL++ S
Sbjct: 180 IPAGVYSFDALIKYCKQEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSKELSKDS 239
Query: 110 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 169
+++FDEAHNIDNVC++SLS+ + T+++A L + EMK DS KL+ EY +LV
Sbjct: 240 IIIFDEAHNIDNVCIESLSLDLTDDTLKRATRGANKLGDAVDEMKAHDSEKLQNEYEKLV 299
Query: 170 EGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQV 229
EGLR A+ AR+ ++ ++NP LP ++L E +PGNIR AEHF+ FLKRFIEYLKTR++V V
Sbjct: 300 EGLRQAEIARDEELFMSNPTLPQDLLDEAIPGNIRKAEHFISFLKRFIEYLKTRMKVLHV 359
Query: 230 VQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKV 289
+ E+P +FL +HLK TF
Sbjct: 360 ISETPISFL-----------------------QHLKE------------LTF-------- 376
Query: 290 CIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKA 349
I+RKPLRFC+ERL+ L+RTLE++ + DF +L I ATLVS+Y GF +I+EPF +
Sbjct: 377 -IDRKPLRFCSERLSLLVRTLELSEIEDFHALKDIATFATLVSTYDTGFQLILEPFESEG 435
Query: 350 PTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTL 409
TVPNP+L+F CLD+S+AIKPVF+RF +V+ITSGT+SPLDMYPK++NFQ VI S++MTL
Sbjct: 436 STVPNPILHFICLDASIAIKPVFERFSSVIITSGTISPLDMYPKMMNFQTVIQESYTMTL 495
Query: 410 ARPCLLPM----------------------VRENYAMGLMI-------DDLPVFFPYEYI 440
AR LPM V NY L+I D + VFFP Y+
Sbjct: 496 ARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYG-SLLIEFSKITPDGMVVFFP-SYL 553
Query: 441 YPEQYAYMVELKKALD 456
Y E M + LD
Sbjct: 554 YMESIISMWQTMGVLD 569
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 130/207 (62%), Gaps = 11/207 (5%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP-----------VCDFYEKFDAVGREA 703
++S+ER G +VD +C +T+ +++R G P +CD +E + + +
Sbjct: 119 TISQERKGNVVDEKCRRITNGQLKERIAKGLVTPDQEVNHAEANTLCDMHENMNDMDQHN 178
Query: 704 PLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARS 763
+ GVYS L + ++ G CPYF R+ I I++YSYHYLLDPKIA VSKEL++
Sbjct: 179 LIPAGVYSFDALIKYCKQEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSKELSKD 238
Query: 764 SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARL 823
S+++FDEAHNIDNVC++SLS+ + T+++A L + EMK DS KL+ EY +L
Sbjct: 239 SIIIFDEAHNIDNVCIESLSLDLTDDTLKRATRGANKLGDAVDEMKAHDSEKLQNEYEKL 298
Query: 824 VEGLRDAQSARETDVVLANPVLPDEIL 850
VEGLR A+ AR+ ++ ++NP LP ++L
Sbjct: 299 VEGLRQAEIARDEELFMSNPTLPQDLL 325
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/120 (57%), Positives = 86/120 (71%), Gaps = 6/120 (5%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM ++KK LD G+C+LEMPSGTGKT SLLSL VAY
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYY---IKHNEEINMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL +L ++ + + EE GL L+SRKNLC+H
Sbjct: 61 MHYP-EHRKIVYCSRTMSEIEKALIELHKLMEFRSTELGYVEEFR--GLGLTSRKNLCVH 117
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D SV+RNYG LL++ + + PDG+V FF SYLY+ES+++ W G++D + K
Sbjct: 514 ISSRFEIRNDPSVVRNYGSLLIEFSKITPDGMVVFFPSYLYMESIISMWQTMGVLDEVWK 573
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 574 YKLILVETPDAQETSLALETYRKACSNGRGAVLLSVA---RGKVSEGI 618
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 71/109 (65%), Gaps = 8/109 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E +RD RE D + + + +L+GK DYGIM+ AD+RF++ K+++L
Sbjct: 645 ARL-EFMRDHFQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFSK--KKNQL 701
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLD 924
PKWI + L D+ TNLST+ A+ ++++LR +AQP +D GV++ +++
Sbjct: 702 PKWIAQALNDSDTNLSTDMALATARKFLRSLAQPANPKDQEGVSVWNIE 750
>gi|403412410|emb|CCL99110.1| predicted protein [Fibroporia radiculosa]
Length = 759
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/425 (45%), Positives = 285/425 (67%), Gaps = 54/425 (12%)
Query: 1 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKE+ GK+VD RC LT+S+V + R G ++ +CD++E + + + PG++++
Sbjct: 85 VSKEKKGKVVDARCRDLTNSAVCEKGRQNPG-SVDLCDWHENLGKLDPGSLIPPGIWTLA 143
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+ + GR+ +CPYFL R+ + I++YS+HYLLDPK+A VSKE+++ ++VVFDEAHN
Sbjct: 144 DVLQYGRDNTICPYFLVRRMMPFVDIIIYSFHYLLDPKVAEQVSKEMSKDAIVVFDEAHN 203
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ ++R +E A ++ L ++E+K+ D++KL++EYA+LVEGL++A A
Sbjct: 204 IDNVCIESLSIDLSRPMLESAARSVGKLGDRIEEIKKTDASKLQDEYAKLVEGLQEA--A 261
Query: 179 RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL 238
+ D ++NPVLP+++L+E +PGNIR AEHFV FLKRF+EYLKTR+RV VV E+P +FL
Sbjct: 262 NDEDAFMSNPVLPEDLLKEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAETPLSFL 321
Query: 239 KDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRF 298
+ LKDI+ IER+PLRF
Sbjct: 322 Q-----------------------------------------HLKDITY---IERRPLRF 337
Query: 299 CAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTK-----GFAIIVEPFSDKAPTVP 353
CAERL SL+RTL+++ L +++SL + ATLV++Y K GF +I+EPF TVP
Sbjct: 338 CAERLQSLVRTLDLSRLDEYASLQKVASFATLVATYEKGAIHVGFLLILEPFETDNATVP 397
Query: 354 NPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPC 413
NP+ + CLD ++AIKPVF+RF TVVITSGT+SPLDMYPK+L F PV+ +++MTL R
Sbjct: 398 NPIFHLTCLDPAIAIKPVFERFSTVVITSGTISPLDMYPKMLQFTPVVQETYAMTLTRNS 457
Query: 414 LLPMV 418
LP+V
Sbjct: 458 FLPLV 462
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/198 (43%), Positives = 144/198 (72%), Gaps = 5/198 (2%)
Query: 656 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
VSKE+ GK+VD RC LT+S+V + R G ++ +CD++E + + + PG++++
Sbjct: 85 VSKEKKGKVVDARCRDLTNSAVCEKGRQNPG-SVDLCDWHENLGKLDPGSLIPPGIWTLA 143
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
+ + GR+ +CPYFL R+ + I++YS+HYLLDPK+A VSKE+++ ++VVFDEAHN
Sbjct: 144 DVLQYGRDNTICPYFLVRRMMPFVDIIIYSFHYLLDPKVAEQVSKEMSKDAIVVFDEAHN 203
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC++SLS+ ++R +E A ++ L ++E+K+ D++KL++EYA+LVEGL++A A
Sbjct: 204 IDNVCIESLSIDLSRPMLESAARSVGKLGDRIEEIKKTDASKLQDEYAKLVEGLQEA--A 261
Query: 834 RETDVVLANPVLPDEILQ 851
+ D ++NPVLP+++L+
Sbjct: 262 NDEDAFMSNPVLPEDLLK 279
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 81/121 (66%), Gaps = 8/121 (6%)
Query: 821 ARLVEGLRDAQSARET-----DVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRDA RE+ D + +L+GKTD+G+M+FADKRFAR+DKR+KL
Sbjct: 603 ARL-EYLRDAYRIRESEFLGFDAMRNAAQCVGRVLRGKTDWGLMVFADKRFARADKRAKL 661
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
P+WI +Y+T+ +NLST+ A+ LSK ++R ++Q E+ GV+L +L+ +EK AR
Sbjct: 662 PRWINQYITETASNLSTDMALTLSKLFMRTISQN-PNENQTGVSLWTLED-VEKAQARQR 719
Query: 936 E 936
E
Sbjct: 720 E 720
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 72/109 (66%), Gaps = 5/109 (4%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +L++ + +VPDG+V FF SYLY+ES+VA+W D GI++ + K
Sbjct: 472 ISSRFEVRNDPAVVRNFGSILIEYSKIVPDGIVAFFPSYLYMESIVAAWNDMGILNEVWK 531
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENI 687
KL+F+ET DA + S++ E + D GR L S + R K E I
Sbjct: 532 HKLIFVETPDA-NETSIALENYRRACDNGRGAVLLSVA---RGKVSEGI 576
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 56/85 (65%), Gaps = 8/85 (9%)
Query: 465 MPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI 524
MPSGTGKT SLLSLIV+Y +P KL+YCSRTVPEIEK +EEL RL Y + E
Sbjct: 1 MPSGTGKTVSLLSLIVSYQQFYPAK-RKLIYCSRTVPEIEKALEELKRLMVYRLSSAETE 59
Query: 525 -------NMTGLVLSSRKNLCIHSE 542
+ GL L+SRKNLCIH E
Sbjct: 60 EEKEKERSFYGLGLTSRKNLCIHPE 84
>gi|238883179|gb|EEQ46817.1| DNA repair helicase RAD3 [Candida albicans WO-1]
Length = 701
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 220/509 (43%), Positives = 302/509 (59%), Gaps = 82/509 (16%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP----VCDFYEKFDAVGREAPLAPGVYS 56
+SKER G +VD +C +T+ ++++ + G +P +C F+EK + + GVYS
Sbjct: 120 ISKERKGVVVDEKCRRITNGQLKEKIEKG--VPTEDSLCSFHEKLYDLEPHNLVPSGVYS 177
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
L + +E G CPYF R+ I I++YSYHYLLDPKIA VS+EL++ S+V+FDEA
Sbjct: 178 FDALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEA 237
Query: 117 HNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQ 176
HNIDNVC++SLS+ + T++KA L +++MK DS KL+ EY +LVEGLR A+
Sbjct: 238 HNIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAE 297
Query: 177 SARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPAT 236
AR+ ++ +ANPVLP ++L E +PGNIR EHF+ FLKRFIEYLKTR++V V+ E+P +
Sbjct: 298 IARDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTS 357
Query: 237 FLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPL 296
FL +HLK IERKPL
Sbjct: 358 FL-----------------------QHLK---------------------ELTYIERKPL 373
Query: 297 RFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPV 356
RFC+ERL+ L+RTLE+T + DF++L I ATLVS+Y GF +I+EP+ + TVPNP+
Sbjct: 374 RFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLILEPYETEGSTVPNPI 433
Query: 357 LYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLP 416
L+F CLD+S+AIKPVFDRF +V+ITSGT+SPLDMYPK+L F+ VI S++MTLAR LP
Sbjct: 434 LHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVIQESYAMTLARRSFLP 493
Query: 417 M----------------------VRENYAMGLMI-------DDLPVFFPYEYIYPEQYAY 447
M V NY L+I D + VFFP Y+Y E
Sbjct: 494 MIVTKGSDQVSISSRFEIRNDPSVVRNYG-SLLIEFAKITPDGMVVFFP-SYLYMESIIS 551
Query: 448 MVELKKALD-AKGHCLLEMPSGTGKTTSL 475
M + LD H L+ + + + TSL
Sbjct: 552 MWQSMGVLDEVWKHKLILVETPDAQETSL 580
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/260 (41%), Positives = 156/260 (60%), Gaps = 14/260 (5%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP----VCDFYEKFDAVGREAPLAPGVY 710
++SKER G +VD +C +T+ ++++ + G +P +C F+EK + + GVY
Sbjct: 119 TISKERKGVVVDEKCRRITNGQLKEKIEKG--VPTEDSLCSFHEKLYDLEPHNLVPSGVY 176
Query: 711 SITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDE 770
S L + +E G CPYF R+ I I++YSYHYLLDPKIA VS+EL++ S+V+FDE
Sbjct: 177 SFDALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDE 236
Query: 771 AHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDA 830
AHNIDNVC++SLS+ + T++KA L +++MK DS KL+ EY +LVEGLR A
Sbjct: 237 AHNIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQA 296
Query: 831 QSARETDVVLANPVLP----DEILQGKTDYGIMIFAD-KRFARSDK-RSKLPKWIQEYLT 884
+ AR+ ++ +ANPVLP DE + G G A KRF K R K+ I E T
Sbjct: 297 EIARDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPT 356
Query: 885 DNLTNLSTEEAVQLSKRWLR 904
L +L +E + ++ LR
Sbjct: 357 SFLQHL--KELTYIERKPLR 374
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/165 (49%), Positives = 103/165 (62%), Gaps = 11/165 (6%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM ++KK LD G+C+LEMPSGTGKT SLLSL VAY
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSE 542
+P + K++YCSRT+ EIEK + EL +L ++ E+ + GL L+SRKNLC+H
Sbjct: 61 MHYP-EHRKIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPT 119
Query: 543 F-ETRDDISV------IRNYGQLLVDIACVVP-DGVVCFFTSYLY 579
+ R + V I N GQL I VP + +C F LY
Sbjct: 120 ISKERKGVVVDEKCRRITN-GQLKEKIEKGVPTEDSLCSFHEKLY 163
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D SV+RNYG LL++ A + PDG+V FF SYLY+ES+++ W G++D + K
Sbjct: 505 ISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLYMESIISMWQSMGVLDEVWK 564
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 565 HKLILVETPDAQETSLALETYRKACSNGRGAVLLSVA---RGKVSEGI 609
>gi|294659657|ref|XP_462055.2| DEHA2G12056p [Debaryomyces hansenii CBS767]
gi|199434130|emb|CAG90541.2| DEHA2G12056p [Debaryomyces hansenii CBS767]
Length = 794
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/428 (45%), Positives = 276/428 (64%), Gaps = 54/428 (12%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAG----------ENIPVCDFYEKFDAVGREAPL 50
+SKER G +VD +C +T+ ++ + + G E +C F+E + + + +
Sbjct: 120 ISKERKGIVVDEKCRRVTNGQLKKKIENGLINTEQTQDPEANALCSFHESLNEMDQHNLI 179
Query: 51 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 110
GVYS L +E+G CPYF R+ I I++YSYHYLLDPKIA+ VSKE+++ S+
Sbjct: 180 PAGVYSFDALINHCKEVGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIADRVSKEISKDSI 239
Query: 111 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVE 170
++FDEAHNIDNVC++SLS+ + T+++A L + +MK DS KL+ EY +LVE
Sbjct: 240 IIFDEAHNIDNVCIESLSLDLTDDTLKRATRGANKLGDAVDDMKSQDSEKLQNEYEKLVE 299
Query: 171 GLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVV 230
GLR A+ AR+ ++ ++NP LP ++L E +PGNIR AEHF+ FLKRFIEYLKTR++V V+
Sbjct: 300 GLRQAEIARDEELFMSNPTLPQDLLDEAIPGNIRKAEHFISFLKRFIEYLKTRMKVLHVI 359
Query: 231 QESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVC 290
E+P +FL +HLK TF
Sbjct: 360 SETPISFL-----------------------QHLKD------------LTF--------- 375
Query: 291 IERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAP 350
I+RKPL+FC+ERL+ L+RTLE++ + DF++L I ATLVS+Y GF +I+EPF +
Sbjct: 376 IDRKPLKFCSERLSLLVRTLELSEIEDFTALKDIATFATLVSTYDTGFQLILEPFETEGS 435
Query: 351 TVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLA 410
TVPNP+L+F CLD+S+AIKPVF+RF +V+ITSGT+SPLDMYPK+LNFQ VI S++MTLA
Sbjct: 436 TVPNPILHFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPKMLNFQTVIQESYTMTLA 495
Query: 411 RPCLLPMV 418
R LPM+
Sbjct: 496 RRSFLPMI 503
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 131/206 (63%), Gaps = 10/206 (4%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAG----------ENIPVCDFYEKFDAVGREAP 704
++SKER G +VD +C +T+ ++ + + G E +C F+E + + +
Sbjct: 119 TISKERKGIVVDEKCRRVTNGQLKKKIENGLINTEQTQDPEANALCSFHESLNEMDQHNL 178
Query: 705 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 764
+ GVYS L +E+G CPYF R+ I I++YSYHYLLDPKIA+ VSKE+++ S
Sbjct: 179 IPAGVYSFDALINHCKEVGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIADRVSKEISKDS 238
Query: 765 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 824
+++FDEAHNIDNVC++SLS+ + T+++A L + +MK DS KL+ EY +LV
Sbjct: 239 IIIFDEAHNIDNVCIESLSLDLTDDTLKRATRGANKLGDAVDDMKSQDSEKLQNEYEKLV 298
Query: 825 EGLRDAQSARETDVVLANPVLPDEIL 850
EGLR A+ AR+ ++ ++NP LP ++L
Sbjct: 299 EGLRQAEIARDEELFMSNPTLPQDLL 324
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/120 (56%), Positives = 84/120 (70%), Gaps = 6/120 (5%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLP+ FPY IYPEQYAYM ++KK LD G+C+LEMPSGTGKT SLLS+ VAY
Sbjct: 1 MKFYIDDLPILFPYPRIYPEQYAYMCDIKKTLDVGGNCILEMPSGTGKTISLLSITVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY---YIKHNEEINMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL L + + + EE GL LSSRKNLC+H
Sbjct: 61 MHYP-EHRKVVYCSRTMSEIEKALIELHNLMKFRAEQLGYVEEFR--GLGLSSRKNLCLH 117
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 80/130 (61%), Gaps = 12/130 (9%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GK DYGIM+ AD+RF+R K+++L
Sbjct: 644 ARL-EFLRDHYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFSR--KKNQL 700
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL----LEKEH 931
PKWI + L D+ TNLST+ A+ +K++LR +AQP D GV++ +L+QL E +H
Sbjct: 701 PKWIAQALNDSDTNLSTDMALANAKKFLRSLAQPTNPNDQEGVSVWNLEQLEKFQREHQH 760
Query: 932 ARAEEEEVPR 941
+ EE P+
Sbjct: 761 QISAAEEKPK 770
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D SV+RNYG LL++ A +VPDG+V FF SYLY+ES+++ W + G++D + K
Sbjct: 513 ISSRFEIRNDPSVVRNYGSLLIEFAKIVPDGMVVFFPSYLYMESIISMWQNMGVLDEVWK 572
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 573 YKLILVETPDAQETSLALETYRKACSNGRGAILLSVA---RGKVSEGI 617
>gi|344299882|gb|EGW30235.1| DNA helicase component of transcription factor b [Spathaspora
passalidarum NRRL Y-27907]
Length = 792
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/429 (45%), Positives = 275/429 (64%), Gaps = 55/429 (12%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAG-----------ENIPVCDFYEKFDAVGREAP 49
+SKER G +VD +C +T+ ++++ + G E +C F+E + + +
Sbjct: 120 ISKERKGVVVDEKCRRITNGQLKNKIEKGMISEQQQADNPEVNSLCSFHENLEDMDQHDL 179
Query: 50 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 109
+ PGVYS L + ++ G CPYF R+ + I++YSYHYLLDPKIA+ VSKEL++ S
Sbjct: 180 IPPGVYSFDGLLKYCKQRGTCPYFTVRRMMPFCNIIIYSYHYLLDPKIADRVSKELSKDS 239
Query: 110 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 169
+V+FDEAHNIDNVC++SLS+ + T+++A L ++EMK DS KL+ EY +LV
Sbjct: 240 IVIFDEAHNIDNVCIESLSLDLTEDTLKRATRGANKLGDAIEEMKAQDSEKLQNEYEQLV 299
Query: 170 EGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQV 229
EGLR A+ AR ++ ++NP+LP ++L E +PGNIR EHF+ FLKRFIEYLKTR++V V
Sbjct: 300 EGLRQAEIARNEELFMSNPILPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHV 359
Query: 230 VQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKV 289
+ E+P +FLK HLK
Sbjct: 360 ISETPISFLK-----------------------HLK---------------------ELT 375
Query: 290 CIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKA 349
I+RKPLRFC+ERL+ L+RTLE+ + DF++L I ATLVS+Y GF +I+EP+ +
Sbjct: 376 YIDRKPLRFCSERLSLLVRTLELAEIEDFNALKDIATFATLVSTYDTGFQLILEPYETEG 435
Query: 350 PTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTL 409
+VPNP+L+F CLD+S+AIKPVF+RF +++ITSGT+SPLDMYPK+LNFQ VI S++MTL
Sbjct: 436 SSVPNPILHFTCLDASIAIKPVFERFYSIIITSGTISPLDMYPKMLNFQTVIQESYAMTL 495
Query: 410 ARPCLLPMV 418
AR LPM+
Sbjct: 496 ARRSFLPMI 504
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/207 (41%), Positives = 134/207 (64%), Gaps = 11/207 (5%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAG-----------ENIPVCDFYEKFDAVGREA 703
++SKER G +VD +C +T+ ++++ + G E +C F+E + + +
Sbjct: 119 TISKERKGVVVDEKCRRITNGQLKNKIEKGMISEQQQADNPEVNSLCSFHENLEDMDQHD 178
Query: 704 PLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARS 763
+ PGVYS L + ++ G CPYF R+ + I++YSYHYLLDPKIA+ VSKEL++
Sbjct: 179 LIPPGVYSFDGLLKYCKQRGTCPYFTVRRMMPFCNIIIYSYHYLLDPKIADRVSKELSKD 238
Query: 764 SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARL 823
S+V+FDEAHNIDNVC++SLS+ + T+++A L ++EMK DS KL+ EY +L
Sbjct: 239 SIVIFDEAHNIDNVCIESLSLDLTEDTLKRATRGANKLGDAIEEMKAQDSEKLQNEYEQL 298
Query: 824 VEGLRDAQSARETDVVLANPVLPDEIL 850
VEGLR A+ AR ++ ++NP+LP ++L
Sbjct: 299 VEGLRQAEIARNEELFMSNPILPQDLL 325
Score = 135 bits (341), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 68/118 (57%), Positives = 84/118 (71%), Gaps = 2/118 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM ++KK LD G+C+LEMPSGTGKT SLLSL VAY
Sbjct: 1 MKFFIDDLPVLFPYPKIYPEQYAYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL +L +Y + + GL L+SRKNLC+H
Sbjct: 61 MHYP-EQRKIVYCSRTMSEIEKALIELYKLMEYRANELGYVEDFRGLGLTSRKNLCLH 117
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 80/124 (64%), Gaps = 10/124 (8%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E +RD RE D + + + +L+GK DYGIM+ AD+RF+R K+++L
Sbjct: 645 ARL-EFMRDHFQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFSR--KKNQL 701
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + L D+ TNLST+ A+ +KR+LR +AQP +D GV++ +L+QL +E+ R
Sbjct: 702 PKWIAQALNDSDTNLSTDMALATAKRFLRSLAQPANPKDQEGVSVWNLEQL--EEYQRKY 759
Query: 936 EEEV 939
E +V
Sbjct: 760 EHKV 763
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D SV+RNYG LLV+ + + PDG+V FF SYLY+ES+++ W + G++D + K
Sbjct: 514 ISSRFEIRNDPSVVRNYGSLLVEFSKITPDGMVVFFPSYLYMESIISMWQNMGVLDEVWK 573
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 574 YKLILVETPDAQETSLALETYRKACSNGRGAVLLSVA---RGKVSEGI 618
>gi|241957053|ref|XP_002421246.1| 5' to 3' DNA helicase, putative; DNA repair helicase Rad3
homologue, putative; transcription initiation factor
TFIIH subunit, putative [Candida dubliniensis CD36]
gi|223644590|emb|CAX40578.1| 5' to 3' DNA helicase, putative [Candida dubliniensis CD36]
Length = 781
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 219/516 (42%), Positives = 301/516 (58%), Gaps = 87/516 (16%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAG-----------ENIPVCDFYEKFDAVGREAP 49
+SKER G +VD +C +T+ ++++ + G E +C ++EK +
Sbjct: 120 ISKERKGVVVDEKCRRITNGQLKEKIEKGVITEEDQVRDPETNSLCSYHEKLYDLEPHNL 179
Query: 50 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 109
+ GVYS L + +E G CPYF R+ I I++YSYHYLLDPKIA VS+EL++ S
Sbjct: 180 VPSGVYSFDALLKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDS 239
Query: 110 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 169
+V+FDEAHNIDNVC++SLS+ + T++KA L +++MK DS KL+ EY +LV
Sbjct: 240 IVIFDEAHNIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKTQDSEKLQNEYEQLV 299
Query: 170 EGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQV 229
EGLR A+ AR+ ++ +ANPVLP ++L E +PGNIR EHF+ FLKRFIEYLKTR++V V
Sbjct: 300 EGLRQAEIARDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHV 359
Query: 230 VQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKV 289
+ E+P +FL +HLK
Sbjct: 360 ISETPTSFL-----------------------QHLK---------------------ELT 375
Query: 290 CIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKA 349
IERKPLRFC+ERL+ L+RTLE+T + DF++L I ATLVS+Y GF +I+EP+ +
Sbjct: 376 YIERKPLRFCSERLSLLVRTLELTEIEDFNALKDIATFATLVSTYDSGFQLILEPYETEG 435
Query: 350 PTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTL 409
TVPNP+L+F CLD+S+AIKPVFDRF +V+ITSGT+SPLDMYPK+L F+ VI S++MTL
Sbjct: 436 STVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVIQESYAMTL 495
Query: 410 ARPCLLPM----------------------VRENYAMGLMI-------DDLPVFFPYEYI 440
AR LPM V NY L+I D + VFFP Y+
Sbjct: 496 ARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYG-SLLIEFAKITPDGMVVFFP-SYL 553
Query: 441 YPEQYAYMVELKKALD-AKGHCLLEMPSGTGKTTSL 475
Y E M + LD H L+ + + + TSL
Sbjct: 554 YMESIISMWQNMGVLDEVWKHKLILVETPDAQETSL 589
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 132/207 (63%), Gaps = 11/207 (5%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAG-----------ENIPVCDFYEKFDAVGREA 703
++SKER G +VD +C +T+ ++++ + G E +C ++EK +
Sbjct: 119 TISKERKGVVVDEKCRRITNGQLKEKIEKGVITEEDQVRDPETNSLCSYHEKLYDLEPHN 178
Query: 704 PLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARS 763
+ GVYS L + +E G CPYF R+ I I++YSYHYLLDPKIA VS+EL++
Sbjct: 179 LVPSGVYSFDALLKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKD 238
Query: 764 SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARL 823
S+V+FDEAHNIDNVC++SLS+ + T++KA L +++MK DS KL+ EY +L
Sbjct: 239 SIVIFDEAHNIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKTQDSEKLQNEYEQL 298
Query: 824 VEGLRDAQSARETDVVLANPVLPDEIL 850
VEGLR A+ AR+ ++ +ANPVLP ++L
Sbjct: 299 VEGLRQAEIARDQELFMANPVLPQDLL 325
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/118 (57%), Positives = 85/118 (72%), Gaps = 2/118 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM ++KK LD G+C+LEMPSGTGKT SLLSL VAY
Sbjct: 1 MKFYIDDLPVLFPYPRIYPEQYAYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL +L ++ E+ + GL L+SRKNLC+H
Sbjct: 61 MHYP-EHRKIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLH 117
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 66/91 (72%), Gaps = 2/91 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYGIM+ AD+RFAR K+++LPKWI + L D+ TNLST+ A+ +K++LR +AQ
Sbjct: 677 VLRGKDDYGIMVLADRRFAR--KKNQLPKWIAQALNDSDTNLSTDMALATAKKFLRSLAQ 734
Query: 909 PFTREDMLGVALLSLDQLLEKEHARAEEEEV 939
P +D GV++ ++DQL E + + EEV
Sbjct: 735 PTNPKDSEGVSIWNIDQLQEYQKQFQKIEEV 765
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D SV+RNYG LL++ A + PDG+V FF SYLY+ES+++ W + G++D + K
Sbjct: 514 ISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLYMESIISMWQNMGVLDEVWK 573
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 574 HKLILVETPDAQETSLALETYRKACSNGRGAVLLSVA---RGKVSEGI 618
>gi|449547579|gb|EMD38547.1| hypothetical protein CERSUDRAFT_113726 [Ceriporiopsis subvermispora
B]
Length = 794
Score = 394 bits (1012), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/420 (45%), Positives = 282/420 (67%), Gaps = 49/420 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKE+ G++VD RC LT+S+V + R G ++ +CD++E + + PG++++
Sbjct: 126 VSKEKKGRVVDARCRDLTNSAVCEKGRQNPG-SVELCDWHENLGQMEPGNLIPPGIWTLA 184
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+ + GR+ +CPYFL R+ + +++YS+HYLLDPK+A VS+E+++ ++VVFDEAHN
Sbjct: 185 DVLQYGRDKRVCPYFLVRRMMPFVDVIIYSFHYLLDPKVAEQVSREVSKDAIVVFDEAHN 244
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + R ++ A ++ L ++E+K+ D++KL++EYA+LVEGL++A +
Sbjct: 245 IDNVCIESLSIDLTRPMLDSAARSVGRLGEKIEEIKKTDASKLQDEYAKLVEGLQEA--S 302
Query: 179 RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL 238
++ D +ANPVLP+++L+E +PGNIR AEHFV FLKRF+EYLKTR+RV VV E+P +FL
Sbjct: 303 QDEDSFMANPVLPEDLLKEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAETPLSFL 362
Query: 239 KDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRF 298
+ LKDI+ IER+PLRF
Sbjct: 363 Q-----------------------------------------HLKDITY---IERRPLRF 378
Query: 299 CAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLY 358
CAERL SL+RTLE+ L + S+L + ATLV++Y KGF +I+EPF TVPNP+ +
Sbjct: 379 CAERLQSLVRTLELNRLDELSALQKVAGFATLVATYEKGFLLILEPFETDNATVPNPIFH 438
Query: 359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD ++AIKPVF+RF TVVITSGT+SPLDMYPK+L F PV+ ++SMTL R LP+V
Sbjct: 439 LTCLDPAIAIKPVFERFSTVVITSGTISPLDMYPKMLQFTPVVQETYSMTLTRNSFLPLV 498
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 143/198 (72%), Gaps = 5/198 (2%)
Query: 656 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
VSKE+ G++VD RC LT+S+V + R G ++ +CD++E + + PG++++
Sbjct: 126 VSKEKKGRVVDARCRDLTNSAVCEKGRQNPG-SVELCDWHENLGQMEPGNLIPPGIWTLA 184
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
+ + GR+ +CPYFL R+ + +++YS+HYLLDPK+A VS+E+++ ++VVFDEAHN
Sbjct: 185 DVLQYGRDKRVCPYFLVRRMMPFVDVIIYSFHYLLDPKVAEQVSREVSKDAIVVFDEAHN 244
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC++SLS+ + R ++ A ++ L ++E+K+ D++KL++EYA+LVEGL++A +
Sbjct: 245 IDNVCIESLSIDLTRPMLDSAARSVGRLGEKIEEIKKTDASKLQDEYAKLVEGLQEA--S 302
Query: 834 RETDVVLANPVLPDEILQ 851
++ D +ANPVLP+++L+
Sbjct: 303 QDEDSFMANPVLPEDLLK 320
Score = 153 bits (386), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 77/126 (61%), Positives = 91/126 (72%), Gaps = 8/126 (6%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLP+ FPY+ IYPEQYAYM +LK+ LDA GHC+LEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFHIDDLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK-------HNEEINMTGLVLSSRKN 536
+P + KL+YCSRTVPEIEK + EL RL DY + +E N GL L+SRKN
Sbjct: 61 QFYP-NKRKLIYCSRTVPEIEKALAELKRLMDYRMTCAETEEEKAKEQNFYGLGLTSRKN 119
Query: 537 LCIHSE 542
LC+H E
Sbjct: 120 LCLHPE 125
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 80/118 (67%), Gaps = 8/118 (6%)
Query: 821 ARLVEGLRDAQSARET-----DVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRDA RE+ D + +L+GKTD+G+M+FADKRFAR+DKR+KL
Sbjct: 639 ARL-EYLRDAYRIRESEFLGFDAMRTAAQCVGRVLRGKTDWGLMVFADKRFARADKRAKL 697
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHAR 933
P+WI +Y+T+ +NLST+ A+ LSK ++R ++Q E+ G++L +L+ +EK A+
Sbjct: 698 PRWINQYITETASNLSTDMALTLSKLFMRTISQN-PNENQTGISLWTLED-IEKAQAK 753
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 72/109 (66%), Gaps = 5/109 (4%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +LV+ + +VPDG+V FF SYLY+ES+VA+W D GI++ + K
Sbjct: 508 ISSRFEVRNDPAVVRNFGSILVEYSKIVPDGIVAFFPSYLYMESIVAAWNDMGILNEVWK 567
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENI 687
KL+F+ET DA + S++ E + D GR L S + R K E I
Sbjct: 568 HKLIFVETPDA-NETSIALENYRRACDNGRGAVLLSVA---RGKVSEGI 612
>gi|390597969|gb|EIN07368.1| DNA repair helicase [Punctularia strigosozonata HHB-11173 SS5]
Length = 796
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/420 (46%), Positives = 279/420 (66%), Gaps = 46/420 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITK 59
VSKE+ GK+VD RC LT+S+V +R +A ++ +C F+EK + PG++++
Sbjct: 126 VSKEKKGKVVDARCRDLTNSAVCERGRAEPGSVELCTFHEKLSEREPGNLIPPGIWTLAD 185
Query: 60 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
+ + GR+ G CPYF R+ + +++YS+HYLLDPK+A VSKEL++ ++VVFDEAHNI
Sbjct: 186 VLQYGRDQGTCPYFTVRRMMPFVDVIIYSFHYLLDPKVAEQVSKELSKDAIVVFDEAHNI 245
Query: 120 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 179
DNVC++SLS+ + R ++ A ++ L ++E+K+ D++KL++EYA+LVEGL++ +
Sbjct: 246 DNVCIESLSIDLTRPMLDSASRSVIRLGEKIEEIKKTDASKLQDEYAKLVEGLQETTDEQ 305
Query: 180 -ETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL 238
+ D + +PVLPD++L+E +PGNIR AEHFV FLKRF+EYLKTR+RV VV E+P +FL
Sbjct: 306 SDEDAFVTSPVLPDDLLKEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAETPLSFL 365
Query: 239 KDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRF 298
+ LKDI+ IER+PLRF
Sbjct: 366 Q-----------------------------------------HLKDITY---IERRPLRF 381
Query: 299 CAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLY 358
CAERL SL+RTLE+T + ++SSL + ATLVS+Y KGF +I+EPF TVPNP+ +
Sbjct: 382 CAERLQSLVRTLELTRIDEYSSLQKVASFATLVSTYEKGFLLILEPFETDNATVPNPMFH 441
Query: 359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD ++AIKPVF+RF +V+ITSGT+SPLDMYPK+L F PV+ ++ MTL R LP+V
Sbjct: 442 LTCLDPAIAIKPVFERFSSVIITSGTISPLDMYPKMLQFTPVVQETYPMTLTRNAFLPLV 501
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 139/198 (70%), Gaps = 2/198 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITK 714
VSKE+ GK+VD RC LT+S+V +R +A ++ +C F+EK + PG++++
Sbjct: 126 VSKEKKGKVVDARCRDLTNSAVCERGRAEPGSVELCTFHEKLSEREPGNLIPPGIWTLAD 185
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ + GR+ G CPYF R+ + +++YS+HYLLDPK+A VSKEL++ ++VVFDEAHNI
Sbjct: 186 VLQYGRDQGTCPYFTVRRMMPFVDVIIYSFHYLLDPKVAEQVSKELSKDAIVVFDEAHNI 245
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + R ++ A ++ L ++E+K+ D++KL++EYA+LVEGL++ +
Sbjct: 246 DNVCIESLSIDLTRPMLDSASRSVIRLGEKIEEIKKTDASKLQDEYAKLVEGLQETTDEQ 305
Query: 835 -ETDVVLANPVLPDEILQ 851
+ D + +PVLPD++L+
Sbjct: 306 SDEDAFVTSPVLPDDLLK 323
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/126 (61%), Positives = 92/126 (73%), Gaps = 8/126 (6%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID+LP+ FPY+ IYPEQYAYM +LK+ LDA GHC+LEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFHIDNLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK-------HNEEINMTGLVLSSRKN 536
+P KL+YCSRTVPEIEK + EL RL +Y I+ +E N +GL L+SRKN
Sbjct: 61 QFYPTK-RKLIYCSRTVPEIEKALSELKRLMEYRIECAETEEEKEKERNFSGLGLTSRKN 119
Query: 537 LCIHSE 542
LCIH E
Sbjct: 120 LCIHPE 125
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 82/121 (67%), Gaps = 8/121 (6%)
Query: 821 ARLVEGLRDAQSARET-----DVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRDA RE+ D + +L+GKTD+G+MIFADKRFAR+DKR+KL
Sbjct: 642 ARL-EYLRDAYRIRESEFLGFDAMRNAAQCVGRVLRGKTDWGLMIFADKRFARADKRAKL 700
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI +Y+T+ +NLST+ A+ LSK ++R ++Q E+ G++L +L+ +EK AR +
Sbjct: 701 PKWINQYITETASNLSTDMALTLSKLFMRTISQN-PNENQTGISLWTLED-IEKAQARQK 758
Query: 936 E 936
E
Sbjct: 759 E 759
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 72/109 (66%), Gaps = 5/109 (4%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +LV+ + +VPDG+V FF SYLY+ES+VA+W D GI++ + K
Sbjct: 511 VSSRFEVRNDPAVVRNFGSILVEYSKIVPDGIVAFFPSYLYMESIVAAWNDMGILNEVWK 570
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENI 687
KL+F+ET DA + S++ E + D GR L S + R K E I
Sbjct: 571 NKLIFVETPDA-NETSIALENYRRACDNGRGAVLLSVA---RGKVSEGI 615
>gi|321249881|ref|XP_003191608.1| general RNA polymerase II transcription factor [Cryptococcus gattii
WM276]
gi|317458075|gb|ADV19821.1| general RNA polymerase II transcription factor, putative
[Cryptococcus gattii WM276]
Length = 799
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/419 (46%), Positives = 275/419 (65%), Gaps = 45/419 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITK 59
VSKE+ GK+VD RC LTS+ ++ +A ++P+C F+E+ + + PGVY++
Sbjct: 120 VSKEKKGKVVDSRCRDLTSAYACEKGRADPGSVPLCSFHEELNNYEPGNLIPPGVYTLDD 179
Query: 60 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
+K+ G+E G+CPYF R+ + +V+YS+HYLLDPK+A VS E+++ S+VVFDEAHNI
Sbjct: 180 VKKYGQEKGVCPYFTIRRMLPFLDVVIYSFHYLLDPKVAEQVSAEMSKESIVVFDEAHNI 239
Query: 120 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 179
DNVC++SLS+ + R ++ A ++ L + E+KE D+ KL +EYA+LVEGL++A +
Sbjct: 240 DNVCIESLSIDLTRPMLDSAARSVNKLNDKIAEIKETDAKKLEDEYAKLVEGLQEANVSA 299
Query: 180 ETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLK 239
E + +L +PVL +++ E VPGNIR AEHF+ FLKRFIEYLKTR+RV VV E+P +FL
Sbjct: 300 EDEDMLVSPVLSKDMVDEAVPGNIRKAEHFIAFLKRFIEYLKTRMRVLHVVAETPQSFL- 358
Query: 240 DISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFC 299
LK+I+ IE++PL+F
Sbjct: 359 ----------------------------------------AHLKEIT---YIEQRPLKFA 375
Query: 300 AERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYF 359
+ERL SL+RTLE+TNL + S+L + TLV++Y KGF +I+EP+ + TVPNP+ +F
Sbjct: 376 SERLTSLVRTLELTNLEEHSALQKVAGFGTLVATYEKGFLLILEPYETEHATVPNPIFHF 435
Query: 360 CCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD SLAI PVFDRF +VVITSGT+SPLDMYPK+L FQPV+ S+ MTL R LPMV
Sbjct: 436 TCLDPSLAIAPVFDRFASVVITSGTISPLDMYPKMLQFQPVMEQSYPMTLTRNAFLPMV 494
Score = 182 bits (462), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 136/196 (69%), Gaps = 1/196 (0%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITK 714
VSKE+ GK+VD RC LTS+ ++ +A ++P+C F+E+ + + PGVY++
Sbjct: 120 VSKEKKGKVVDSRCRDLTSAYACEKGRADPGSVPLCSFHEELNNYEPGNLIPPGVYTLDD 179
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+K+ G+E G+CPYF R+ + +V+YS+HYLLDPK+A VS E+++ S+VVFDEAHNI
Sbjct: 180 VKKYGQEKGVCPYFTIRRMLPFLDVVIYSFHYLLDPKVAEQVSAEMSKESIVVFDEAHNI 239
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + R ++ A ++ L + E+KE D+ KL +EYA+LVEGL++A +
Sbjct: 240 DNVCIESLSIDLTRPMLDSAARSVNKLNDKIAEIKETDAKKLEDEYAKLVEGLQEANVSA 299
Query: 835 ETDVVLANPVLPDEIL 850
E + +L +PVL +++
Sbjct: 300 EDEDMLVSPVLSKDMV 315
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/120 (60%), Positives = 88/120 (73%), Gaps = 2/120 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M M+ DLPV FPY+ +YPEQY+YM +LK LDA GHC+LEMPSGTGKT SLLSLI+AYM
Sbjct: 1 MKFMLGDLPVLFPYDRLYPEQYSYMADLKTTLDAGGHCVLEMPSGTGKTVSLLSLIIAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN-EEINMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRTVPEIEK + EL RL Y + N GL L+SR+NLC+H E
Sbjct: 61 QFYP-NKRKLIYCSRTVPEIEKALAELKRLMAYRADMGANDGNFRGLGLTSRRNLCLHPE 119
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 82/123 (66%), Gaps = 7/123 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GKTD+G+MIFADKRFAR DKR+KL
Sbjct: 635 ARL-EFLRDNHRIRENDYLTFDAMRHAAQCVGRVLRGKTDWGLMIFADKRFARQDKRAKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI Y+T+ +NLST+ AV L+K+++RQ++QPF G++L +L+ + E++ E
Sbjct: 694 PKWINSYITEAHSNLSTDVAVSLAKKFIRQISQPFDHTQT-GISLWTLEDIEERQRQDKE 752
Query: 936 EEE 938
E E
Sbjct: 753 EAE 755
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +L+++A VPDGVV FF SYLY+ES+V++WYD GI+ + K
Sbjct: 504 ISSRFEVRNDPAVVRNFGSILIEMARTVPDGVVAFFPSYLYMESIVSAWYDMGILSEVWK 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KLLF+ET DA+++ + +GR L S + R K E I
Sbjct: 564 HKLLFVETPDAMETSIALRNYREACNNGRGAVLLSVA---RGKVSEGI 608
>gi|254569252|ref|XP_002491736.1| 5' to 3' DNA helicase, involved in nucleotide excision repair and
transcription [Komagataella pastoris GS115]
gi|238031533|emb|CAY69456.1| 5' to 3' DNA helicase, involved in nucleotide excision repair and
transcription [Komagataella pastoris GS115]
gi|328351762|emb|CCA38161.1| DNA excision repair protein ERCC-2 [Komagataella pastoris CBS 7435]
Length = 773
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/420 (46%), Positives = 276/420 (65%), Gaps = 46/420 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE--NIPVCDFYEKFDAVGREAPLAPGVYSIT 58
+S+ER G +VD +C +T+ + + GE +C F+EK + + + GVYS
Sbjct: 119 ISQERKGIVVDEKCRRMTNGQLSLQVAKGEADKDQLCSFHEKMNDLDSHEYIPIGVYSFE 178
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+L + + +G+CPYF R+ + I++YSYHYLLDPKIA VSKEL++ S+V+FDEAHN
Sbjct: 179 ELIKYCKGVGICPYFTVRRMMSFCNIIIYSYHYLLDPKIAQRVSKELSKESIVIFDEAHN 238
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + T++KA + +L + E+K DS KL++EY RLVEGLR +S+
Sbjct: 239 IDNVCIESLSLDLTNDTLKKASRGVNSLSKKVDEIKRIDSKKLQDEYERLVEGLRATESS 298
Query: 179 RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL 238
R ++++ANP+LPD+IL E +PGNIR EHFV FLKRFIEYLKTR++V V+ E+PA+FL
Sbjct: 299 RNEELIMANPILPDDILTESIPGNIRRGEHFVMFLKRFIEYLKTRMKVLHVISETPASFL 358
Query: 239 KDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRF 298
+HLK TF IERKPLRF
Sbjct: 359 -----------------------QHLKL------------LTF---------IERKPLRF 374
Query: 299 CAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLY 358
CAERLA L++TLE+T + +F +L I ATLVS+Y GF +I+EP+ + + PNP+L+
Sbjct: 375 CAERLALLVKTLELTEIEEFIALKDIATFATLVSTYETGFQLILEPYETENASGPNPILH 434
Query: 359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
F CLD+S+AIKP+FDRF +V+ITSGT+SPLDMYPK+L F VI S++MTL+R LP++
Sbjct: 435 FTCLDASIAIKPIFDRFSSVIITSGTISPLDMYPKMLKFDTVIQESYTMTLSRRSFLPLI 494
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 134/197 (68%), Gaps = 2/197 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE--NIPVCDFYEKFDAVGREAPLAPGVYSIT 713
+S+ER G +VD +C +T+ + + GE +C F+EK + + + GVYS
Sbjct: 119 ISQERKGIVVDEKCRRMTNGQLSLQVAKGEADKDQLCSFHEKMNDLDSHEYIPIGVYSFE 178
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
+L + + +G+CPYF R+ + I++YSYHYLLDPKIA VSKEL++ S+V+FDEAHN
Sbjct: 179 ELIKYCKGVGICPYFTVRRMMSFCNIIIYSYHYLLDPKIAQRVSKELSKESIVIFDEAHN 238
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC++SLS+ + T++KA + +L + E+K DS KL++EY RLVEGLR +S+
Sbjct: 239 IDNVCIESLSLDLTNDTLKKASRGVNSLSKKVDEIKRIDSKKLQDEYERLVEGLRATESS 298
Query: 834 RETDVVLANPVLPDEIL 850
R ++++ANP+LPD+IL
Sbjct: 299 RNEELIMANPILPDDIL 315
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 90/129 (69%), Gaps = 2/129 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M +IDDLPV FPY IYPEQYAYM ++K+ LD G+C+LEMPSGTGKT SLLSL V+Y
Sbjct: 1 MKFLIDDLPVIFPYPKIYPEQYAYMCDIKRTLDIGGNCILEMPSGTGKTISLLSLTVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+P + K++YCSRT+ EIEK + EL +L D+ K + N GL L+SRKNLC+H
Sbjct: 61 MFYP-EHRKIIYCSRTMSEIEKALIELTKLMDFRTKELGVKENFRGLGLTSRKNLCLHPI 119
Query: 543 FETRDDISV 551
+ R I V
Sbjct: 120 SQERKGIVV 128
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 69/117 (58%), Gaps = 6/117 (5%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D SV+RNYG LL++ + + PDG+V FF SYLY+ES+++ W + GI+D + K
Sbjct: 504 ISSRFEIRNDPSVVRNYGTLLIEFSKITPDGLVVFFPSYLYMESIISMWQNMGILDEVWK 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKF 696
KL+ +ET D+ ++ + +GR L S + R K E I DF F
Sbjct: 564 YKLILVETPDSQETSLGLETYRKACSNGRGAVLLSVA---RGKVSEGI---DFDHHF 614
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 78/124 (62%), Gaps = 10/124 (8%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD +E + + + + +L+GK DYGIM+ AD+RF+R KR++L
Sbjct: 635 ARL-EYLRDHHQIKENEFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFSR--KRNQL 691
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + L D TNLST+ A+ +K++LR +AQP +D GV++ + +QL K+H + +
Sbjct: 692 PKWIAQNLLDADTNLSTDMAIANAKKFLRTLAQPSNPKDQEGVSVWNAEQL--KDHQKLQ 749
Query: 936 EEEV 939
+ V
Sbjct: 750 TKNV 753
>gi|225437002|ref|XP_002277634.1| PREDICTED: DNA repair helicase UVH6 [Vitis vinifera]
Length = 758
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/417 (46%), Positives = 260/417 (62%), Gaps = 46/417 (11%)
Query: 2 SKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLK 61
++ RD VD C LT+S VR NIP C F+E ++ EA L PGVY++ L+
Sbjct: 124 AENRDS--VDAGCRKLTASWVRALAVENPNIPTCQFFENYEKAASEAVLPPGVYTLQDLR 181
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121
GR+ G CPYFLAR + A +VVYSY YLLDPK+A ++SKE+ R SVVVFDEAHNIDN
Sbjct: 182 AFGRDKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQRESVVVFDEAHNIDN 241
Query: 122 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARET 181
VC+++LSV + R+T+E A N+ + + K D+ +LR EY RLVEGL + +
Sbjct: 242 VCIEALSVSVRRQTLEGATRNLSKMAQEINRFKATDAGRLRAEYNRLVEGLAQRGNLPIS 301
Query: 182 DVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDI 241
D LANP LPD+IL+E VPGNIR AEHF+ L+R ++YL RL + V +E P F+ I
Sbjct: 302 DTWLANPALPDDILKEAVPGNIRRAEHFLSVLRRLVQYLHGRLETENVEKEGPVAFVASI 361
Query: 242 SSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAE 301
+S+ I++K L+FC +
Sbjct: 362 NSQAG--------------------------------------------IDQKMLKFCYD 377
Query: 302 RLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCC 361
RL SL+ TLEIT+ +F + I ATLV +YT+GF+II+EPF ++ P +P+PVL C
Sbjct: 378 RLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSC 437
Query: 362 LDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
D+SLAIKPVF+RFQ+VVITSGTLSP+D+YP++LNF PV+ SF+M+L R C+ PMV
Sbjct: 438 HDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRSFTMSLTRNCICPMV 494
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/195 (49%), Positives = 127/195 (65%), Gaps = 2/195 (1%)
Query: 657 SKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLK 716
++ RD VD C LT+S VR NIP C F+E ++ EA L PGVY++ L+
Sbjct: 124 AENRDS--VDAGCRKLTASWVRALAVENPNIPTCQFFENYEKAASEAVLPPGVYTLQDLR 181
Query: 717 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 776
GR+ G CPYFLAR + A +VVYSY YLLDPK+A ++SKE+ R SVVVFDEAHNIDN
Sbjct: 182 AFGRDKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQRESVVVFDEAHNIDN 241
Query: 777 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARET 836
VC+++LSV + R+T+E A N+ + + K D+ +LR EY RLVEGL + +
Sbjct: 242 VCIEALSVSVRRQTLEGATRNLSKMAQEINRFKATDAGRLRAEYNRLVEGLAQRGNLPIS 301
Query: 837 DVVLANPVLPDEILQ 851
D LANP LPD+IL+
Sbjct: 302 DTWLANPALPDDILK 316
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 4/130 (3%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M I+D+ V+FPY+ IYPEQY+YMVELK+ALDAKGH LLEMP+GTGKT +LLSLI +Y
Sbjct: 1 MKFQIEDVTVYFPYDNIYPEQYSYMVELKRALDAKGHALLEMPTGTGKTIALLSLITSYA 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+ P + KLLYC+RTV E+EK + EL L Y ++H + L LSSRKNLCI+
Sbjct: 61 LSKPSNPIKLLYCTRTVHEMEKTLAELRLLHQYQLRHLGPAARILALGLSSRKNLCINPA 120
Query: 543 F---ETRDDI 549
E RD +
Sbjct: 121 VVSAENRDSV 130
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ + L + + F+ R D V+RNYG+LL+++ VVPDG+VCFF SY Y++
Sbjct: 489 CICP-MVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMVSVVPDGIVCFFVSYSYMDG 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+V +W + GI+ + + KL+FIETQD +++
Sbjct: 548 IVNTWNESGILKEIMQHKLVFIETQDVVET 577
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 58/81 (71%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+MIFADKR++R DKRSKLP WI +L D NLST+ A+ +++ +LR+MAQ
Sbjct: 667 VIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREFLRKMAQ 726
Query: 909 PFTREDMLGVALLSLDQLLEK 929
P+ + + G L ++ LEK
Sbjct: 727 PYDKAGVSGRKTLLSEEDLEK 747
>gi|302666624|ref|XP_003024909.1| hypothetical protein TRV_00914 [Trichophyton verrucosum HKI 0517]
gi|291188986|gb|EFE44298.1| hypothetical protein TRV_00914 [Trichophyton verrucosum HKI 0517]
Length = 765
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/434 (45%), Positives = 276/434 (63%), Gaps = 60/434 (13%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVC----------------DFYEKFDAV 44
V +E+ G +VD RC SLT+ ++++ + GE++ +C D + D +
Sbjct: 79 VKREKSGAVVDARCRSLTAGFIKEKKEKGEDVELCIYHEVRSSSPISRSKADLLQNLDLL 138
Query: 45 GREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKE 104
+ PGV+++ L + G + CPYF AR+ + + +++YSYHYLLDPKIA VSKE
Sbjct: 139 EPSNLVPPGVFTLDGLLKYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKE 198
Query: 105 LARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREE 164
L+R S++VFDEAHNIDNVC++SLS+ + ++ KA LE + +MK +D+ KL+ E
Sbjct: 199 LSRDSIIVFDEAHNIDNVCIESLSIDLTEDSLRKASRGANNLERKIDDMKSSDADKLQNE 258
Query: 165 YARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRL 224
Y +LVEGLR+A ARE + ++ANPVLPD++L+E VPGNIR AEHFV FLKRFIEYLKTR+
Sbjct: 259 YQKLVEGLREADEAREEEQLMANPVLPDDLLKESVPGNIRRAEHFVAFLKRFIEYLKTRM 318
Query: 225 RVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKD 284
+V + E+P +FL + LKD
Sbjct: 319 KVTHTISETPLSFL-----------------------------------------SHLKD 337
Query: 285 ISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEP 344
++ IERKPLRFCAERL SL+RTLE+ N+ D+ L + ATL ++Y KGF +I+EP
Sbjct: 338 LT---FIERKPLRFCAERLTSLVRTLELVNIEDYQPLQEVATFATLAATYEKGFLLILEP 394
Query: 345 FSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHS 404
F TVPNP+L+F CLD+++AIKPVFDRF +V+ITSGTLSPL+MYPK+L F + S
Sbjct: 395 FESDTATVPNPILHFTCLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFDAALQES 454
Query: 405 FSMTLARPCLLPMV 418
+SMTLAR LPM+
Sbjct: 455 YSMTLARRSFLPMI 468
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 138/213 (64%), Gaps = 16/213 (7%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVC----------------DFYEKFDA 698
SV +E+ G +VD RC SLT+ ++++ + GE++ +C D + D
Sbjct: 78 SVKREKSGAVVDARCRSLTAGFIKEKKEKGEDVELCIYHEVRSSSPISRSKADLLQNLDL 137
Query: 699 VGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSK 758
+ + PGV+++ L + G + CPYF AR+ + + +++YSYHYLLDPKIA VSK
Sbjct: 138 LEPSNLVPPGVFTLDGLLKYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSK 197
Query: 759 ELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLRE 818
EL+R S++VFDEAHNIDNVC++SLS+ + ++ KA LE + +MK +D+ KL+
Sbjct: 198 ELSRDSIIVFDEAHNIDNVCIESLSIDLTEDSLRKASRGANNLERKIDDMKSSDADKLQN 257
Query: 819 EYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
EY +LVEGLR+A ARE + ++ANPVLPD++L+
Sbjct: 258 EYQKLVEGLREADEAREEEQLMANPVLPDDLLK 290
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 78/126 (61%), Gaps = 10/126 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR++L
Sbjct: 609 ARL-EFLRENYRIRENDFLSFDALRHAAQCLGRVLRGKDDYGVMVLADRRFQK--KRNQL 665
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + ++ TNLST+ AV +K +L+ MAQPF +D G++ SL+ L K H +
Sbjct: 666 PKWISQAMLESETNLSTDMAVATAKSFLKSMAQPFKAKDQEGISTWSLEDL--KRHLEKQ 723
Query: 936 EEEVPR 941
++E+ +
Sbjct: 724 KQEIEK 729
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 52/74 (70%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG +L++ + PDGVV FF SYLY+ES+++ W GI+D++
Sbjct: 478 ISSSFQIRNDPGVVRNYGNMLLEFCRITPDGVVVFFPSYLYMESIISMWQGMGILDSVWN 537
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ +S
Sbjct: 538 YKLILVETPDSQES 551
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 59/101 (58%), Gaps = 10/101 (9%)
Query: 465 MPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI 524
MPSGTGKT +LL+LIVAY +P + KL+YCSRT+ EIEK + EL L Y + +
Sbjct: 1 MPSGTGKTITLLALIVAYQQHYP-EHRKLIYCSRTMSEIEKALSELRALMKYRSQKLGVV 59
Query: 525 -NMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
+ L L+SRKNLC+H SV R +VD C
Sbjct: 60 EDFRALGLTSRKNLCLHP--------SVKREKSGAVVDARC 92
>gi|406859189|gb|EKD12258.1| tfiih complex helicase [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 786
Score = 391 bits (1004), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/418 (46%), Positives = 270/418 (64%), Gaps = 47/418 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++PVC +++ D + + GV++ +
Sbjct: 96 VKREKSGTVVDARCRSLTAGFVKEKKERGEDVPVCIYHDNLDLLEPHDLIPNGVWTFEGI 155
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G E CPYF +R+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNID
Sbjct: 156 LKYGEEHKQCPYFTSRRMMSFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNID 215
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I ++ KA Q LE + +MK +D+ KL+ EYA+LVEGLRDA AR+
Sbjct: 216 NVCIESLSTDITEDSLRKATRGAQNLEIKITDMKNSDADKLKSEYAKLVEGLRDADDARQ 275
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D ++NP LPD++L+E VPGNIR AEHF+ + L+TR++V+QV+ E+P +FL
Sbjct: 276 EDAFMSNPALPDDLLKEAVPGNIRRAEHFITSES---DLLQTRMKVRQVISETPPSFLA- 331
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPLRFCA
Sbjct: 332 ----------------------HLKE------------YTF---------IEKKPLRFCA 348
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EP+ VPNPVL+F
Sbjct: 349 ERLTSLVRTLELTNIEDYQPLQEVATFATLVATYEKGFVLILEPYESDTAEVPNPVLHFA 408
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGT+SPL+MYPK+L F V+ S++MTLAR LPM+
Sbjct: 409 CLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLGFTAVVQESYTMTLARRSFLPMI 466
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 135/197 (68%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++PVC +++ D + + GV++
Sbjct: 95 SVKREKSGTVVDARCRSLTAGFVKEKKERGEDVPVCIYHDNLDLLEPHDLIPNGVWTFEG 154
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ + G E CPYF +R+ + +++YSYHYLLDPKIA VSKEL++ +VVFDEAHNI
Sbjct: 155 ILKYGEEHKQCPYFTSRRMMSFCNVIIYSYHYLLDPKIAERVSKELSKDCIVVFDEAHNI 214
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I ++ KA Q LE + +MK +D+ KL+ EYA+LVEGLRDA AR
Sbjct: 215 DNVCIESLSTDITEDSLRKATRGAQNLEIKITDMKNSDADKLKSEYAKLVEGLRDADDAR 274
Query: 835 ETDVVLANPVLPDEILQ 851
+ D ++NP LPD++L+
Sbjct: 275 QEDAFMSNPALPDDLLK 291
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 75/120 (62%), Gaps = 14/120 (11%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M +LK+ LDA GHC+LEMPSGTGKT SLLSLIVAY +P + KL+YCSRT+ EIEK +
Sbjct: 1 MCDLKRTLDAGGHCVLEMPSGTGKTVSLLSLIVAYQQYYP-EHRKLIYCSRTMSEIEKAL 59
Query: 508 EELARLFDY---YIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
EL L Y + H EE GL L+SRKNLC+H SV R +VD C
Sbjct: 60 FELEALMKYRAEMLGHEEEFR--GLGLTSRKNLCLHP--------SVKREKSGTVVDARC 109
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 9/124 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYGIM+ AD+RF + KR++L
Sbjct: 607 ARL-EFLRETYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFLK--KRNQL 663
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + + NLST+ AV +K++LR MAQPF D G++ SL+ LE + +
Sbjct: 664 PKWIDDAMHEAEVNLSTDTAVGTAKKFLRGMAQPFQASDQEGISTWSLED-LEAHREKVD 722
Query: 936 EEEV 939
EE +
Sbjct: 723 EENI 726
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R++ SV+RNYG LL + + + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 476 ISSGFQVRNEPSVVRNYGHLLTEFSKLTPDGMVVFFPSYLYMESIISMWQGMGILDEVWK 535
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 536 NKLILVETPDAQET 549
>gi|405117928|gb|AFR92703.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii H99]
Length = 773
Score = 391 bits (1004), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/420 (46%), Positives = 273/420 (65%), Gaps = 47/420 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKE+ GK+VD RC LTS+ + R G ++P+C F+E+ + + PGVY++
Sbjct: 94 VSKEKKGKVVDSRCRDLTSAFACEKGRTDPG-SVPLCSFHEELNNYEPGNLIPPGVYTLD 152
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+K+ G+E G+CPYF R+ + +V+YS+HYLLDPK+A VS E+++ S+V+FDEAHN
Sbjct: 153 DVKKYGQEKGVCPYFTIRRMLPFLDVVIYSFHYLLDPKVAEQVSAEMSKESIVIFDEAHN 212
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + R ++ A ++ L + E+KE D+ KL +EYA+LVEGL++A
Sbjct: 213 IDNVCIESLSIDLTRPMLDSAARSVNKLSDKIAEIKETDAKKLEDEYAKLVEGLQEANER 272
Query: 179 RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL 238
E + +L +PVL +++ E VPGNIR AEHF+ FLKRFIEYLKTR+RV VV E+P +FL
Sbjct: 273 AEDEDMLVSPVLSKDMVDEAVPGNIRKAEHFIAFLKRFIEYLKTRMRVLHVVAETPQSFL 332
Query: 239 KDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRF 298
LK+I+ IE++PL+F
Sbjct: 333 -----------------------------------------AHLKEIT---YIEQRPLKF 348
Query: 299 CAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLY 358
+ERL SL+RTLE+TNL + S+L + TLV++Y KGF +I+EP+ + TVPNP+ +
Sbjct: 349 ASERLTSLVRTLELTNLEEHSALQKVAGFGTLVATYEKGFLLILEPYETEHATVPNPIFH 408
Query: 359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
F CLD SLAI PVFDRF +VVITSGT+SPLDMYPK+L FQPV+ S+ MTL R LPMV
Sbjct: 409 FTCLDPSLAIAPVFDRFASVVITSGTISPLDMYPKMLQFQPVMEQSYPMTLTRNAFLPMV 468
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 134/197 (68%), Gaps = 3/197 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
VSKE+ GK+VD RC LTS+ + R G ++P+C F+E+ + + PGVY++
Sbjct: 94 VSKEKKGKVVDSRCRDLTSAFACEKGRTDPG-SVPLCSFHEELNNYEPGNLIPPGVYTLD 152
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
+K+ G+E G+CPYF R+ + +V+YS+HYLLDPK+A VS E+++ S+V+FDEAHN
Sbjct: 153 DVKKYGQEKGVCPYFTIRRMLPFLDVVIYSFHYLLDPKVAEQVSAEMSKESIVIFDEAHN 212
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC++SLS+ + R ++ A ++ L + E+KE D+ KL +EYA+LVEGL++A
Sbjct: 213 IDNVCIESLSIDLTRPMLDSAARSVNKLSDKIAEIKETDAKKLEDEYAKLVEGLQEANER 272
Query: 834 RETDVVLANPVLPDEIL 850
E + +L +PVL +++
Sbjct: 273 AEDEDMLVSPVLSKDMV 289
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 82/123 (66%), Gaps = 7/123 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GKTD+G+M+FADKRFAR DKR+KL
Sbjct: 609 ARL-EFLRDNHRIRENDYLTFDAMRHAAQCVGRVLRGKTDWGLMVFADKRFARQDKRAKL 667
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI Y+T+ +NLST+ AV L+K+++RQ++QPF G++L +L+ + E++ +
Sbjct: 668 PKWINSYITEAHSNLSTDVAVSLAKKFIRQISQPFDHTQT-GISLWTLEDIEERQRQDKD 726
Query: 936 EEE 938
E E
Sbjct: 727 EAE 729
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +L+++A VPDGVV FF SYLY+ES+V++WYD GI+ + K
Sbjct: 478 ISSRFEVRNDPAVVRNFGSILIEMARTVPDGVVAFFPSYLYMESIVSAWYDMGILSEVWK 537
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KLLF+ET DA+++ + +GR L S + R K E I
Sbjct: 538 HKLLFVETPDAMETSIALRNYREACNNGRGAVLLSVA---RGKVSEGI 582
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 64/120 (53%), Gaps = 28/120 (23%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M M+ DLPV FPY+ +YPEQY+YM +LK LDA Y
Sbjct: 1 MKFMLGDLPVLFPYDRLYPEQYSYMADLKTTLDAG----------------------FYP 38
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN-EEINMTGLVLSSRKNLCIHSE 542
N KL+YCSRTVPEIEK + EL RL Y + + + GL L+SR+NLC+H E
Sbjct: 39 NKR-----KLIYCSRTVPEIEKALAELKRLMVYRAEMGANDGDFRGLGLTSRRNLCLHPE 93
>gi|55845886|gb|AAV66966.1| excision repair cross-complementing 2 [Canis lupus familiaris]
Length = 276
Score = 391 bits (1004), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/320 (59%), Positives = 234/320 (73%), Gaps = 44/320 (13%)
Query: 91 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 150
YLLDPKIA +VSKELAR +VVVFDEAHNIDNVC+DS+SV I RRT+++ GN++TL+ T+
Sbjct: 1 YLLDPKIAELVSKELARKAVVVFDEAHNIDNVCIDSMSVNITRRTLDRCQGNLETLQKTV 60
Query: 151 KEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFV 210
+KE D +LREEY RLVEGLR+A +ARETD LANPVLPDE+LQE VPG+IRTAEHF+
Sbjct: 61 LRIKETDEQRLREEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIRTAEHFL 120
Query: 211 GFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRV 270
GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 121 GFLRRLLEYVKWRLRVQHVVQESPPAF--------------------------------- 147
Query: 271 QQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATL 330
L ++ +VCI+RKPLRFCAERL SLL TLEI +L DFS L ++ + ATL
Sbjct: 148 -----------LSGLAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATL 196
Query: 331 VSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDM 390
VS+Y KGF II+EPF D+ PT+ NP+L+F C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+
Sbjct: 197 VSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDI 256
Query: 391 YPKILNFQPVIMHSFSMTLA 410
YPKIL+F PV M +F+MTLA
Sbjct: 257 YPKILDFHPVTMATFTMTLA 276
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 90/106 (84%)
Query: 746 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 805
YLLDPKIA +VSKELAR +VVVFDEAHNIDNVC+DS+SV I RRT+++ GN++TL+ T+
Sbjct: 1 YLLDPKIAELVSKELARKAVVVFDEAHNIDNVCIDSMSVNITRRTLDRCQGNLETLQKTV 60
Query: 806 KEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
+KE D +LREEY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 61 LRIKETDEQRLREEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 106
>gi|255559474|ref|XP_002520757.1| DNA repair helicase rad3/xp-d, putative [Ricinus communis]
gi|223540142|gb|EEF41719.1| DNA repair helicase rad3/xp-d, putative [Ricinus communis]
Length = 758
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/417 (45%), Positives = 264/417 (63%), Gaps = 46/417 (11%)
Query: 2 SKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLK 61
++ RD VD C LT+S +R NIP C+F+E ++ A L PGVY++ L+
Sbjct: 124 AENRDS--VDAGCRKLTASWMRAMAAENPNIPTCEFFENYERAASAAVLPPGVYTLQDLR 181
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121
G+E G CPYFLAR + A +VVYSY YLLDPK+A ++SKE+ + SVVVFDEAHNIDN
Sbjct: 182 TYGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDN 241
Query: 122 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARET 181
VC+++LSV + ++T+E A N+ + ++ K D+ +LR EY RLVEGL + T
Sbjct: 242 VCIEALSVSVRKQTLEGASRNLSRINQEIERFKATDAGRLRAEYNRLVEGLAQRGNLAVT 301
Query: 182 DVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDI 241
D L+NP LPD+IL+E VPGNIR AEHF+ L+R ++YLK RL + V +ESP +F+ +
Sbjct: 302 DTWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLKGRLDTENVEKESPVSFVASL 361
Query: 242 SSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAE 301
+S+ I++K L+FC +
Sbjct: 362 NSQAG--------------------------------------------IDQKTLKFCYD 377
Query: 302 RLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCC 361
RL SL+ TLEIT+ +F + I ATLV +Y++GF+II+EPF ++ P +P+PVL C
Sbjct: 378 RLHSLMLTLEITDTDEFLHVQTICDFATLVGTYSRGFSIIIEPFDERMPHIPDPVLQLSC 437
Query: 362 LDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
D+SLAIKPVFDRFQ+VVITSGTLSP+D+YP++LNF PV+ SF+M+L R C+ PMV
Sbjct: 438 HDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFTMSLTRDCICPMV 494
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 92/195 (47%), Positives = 128/195 (65%), Gaps = 2/195 (1%)
Query: 657 SKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLK 716
++ RD VD C LT+S +R NIP C+F+E ++ A L PGVY++ L+
Sbjct: 124 AENRDS--VDAGCRKLTASWMRAMAAENPNIPTCEFFENYERAASAAVLPPGVYTLQDLR 181
Query: 717 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 776
G+E G CPYFLAR + A +VVYSY YLLDPK+A ++SKE+ + SVVVFDEAHNIDN
Sbjct: 182 TYGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDN 241
Query: 777 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARET 836
VC+++LSV + ++T+E A N+ + ++ K D+ +LR EY RLVEGL + T
Sbjct: 242 VCIEALSVSVRKQTLEGASRNLSRINQEIERFKATDAGRLRAEYNRLVEGLAQRGNLAVT 301
Query: 837 DVVLANPVLPDEILQ 851
D L+NP LPD+IL+
Sbjct: 302 DTWLSNPALPDDILK 316
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/130 (54%), Positives = 92/130 (70%), Gaps = 4/130 (3%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M I+D+ V+FPY+ IYPEQY+YM+ELK+ALDAKGHCLLEMP+GTGKT +LLSLI +Y
Sbjct: 1 MKFQIEDVTVYFPYDNIYPEQYSYMIELKRALDAKGHCLLEMPTGTGKTIALLSLITSYS 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+ P KL+YC+RTV E+EK + EL L +Y IKH + + LSSRKNLC++
Sbjct: 61 LSKPQSPVKLIYCTRTVHEMEKTLAELKLLHNYQIKHLGPAARILAIGLSSRKNLCVNPR 120
Query: 543 F---ETRDDI 549
E RD +
Sbjct: 121 VLAAENRDSV 130
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ + L + + F+ R D V RNYG+LLV++ VVPDG+VCFF SY Y++
Sbjct: 489 CICP-MVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSVVPDGIVCFFVSYSYMDG 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
++ SW + GI+ + + KL+FIETQD +++
Sbjct: 548 IINSWNETGILKEIMQHKLVFIETQDVVET 577
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 69/114 (60%), Gaps = 6/114 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD +E D + + + +++ K DYG+MIFADKR++R DKRSKL
Sbjct: 635 ARL-EYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEK 929
P WI +L D NLST+ A+ +++ +LR+MAQP+ + G L + LEK
Sbjct: 694 PGWILSHLRDANLNLSTDMALHIAREFLRKMAQPYDKTGASGRKTLLSQEDLEK 747
>gi|346319590|gb|EGX89191.1| DNA repair helicase RAD3 [Cordyceps militaris CM01]
Length = 709
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/418 (45%), Positives = 268/418 (64%), Gaps = 52/418 (12%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE+ D + + GV++ +
Sbjct: 45 VKREKSGSVVDARCRSLTAGFVKEKKERGED--------NLDLLESHNLIPNGVWTFDGI 96
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF AR+ + + +V++SYHYLLDPKIA VSK+ ++ +VVFDEAHNID
Sbjct: 97 LRYGEENKQCPYFTARRMMQYCNVVIFSYHYLLDPKIAERVSKDFSKDCIVVFDEAHNID 156
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I ++ +A Q L+ + +M+E D +L+ EY +LV+GLR+A AR+
Sbjct: 157 NVCIESLSTDITEESLRRATRGAQNLKQKIADMRETDQEQLQNEYEKLVQGLREADEARQ 216
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANPVLP+E+L+E VPGNIR AEHFV FL+RFIEYLKTR++V+QV+ E+P +FL
Sbjct: 217 EDAFMANPVLPEELLKEAVPGNIRRAEHFVSFLQRFIEYLKTRMKVRQVISETPPSFLA- 275
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPL FCA
Sbjct: 276 ----------------------HLKEH------------TF---------IEKKPLGFCA 292
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EP+ VPNP+L+F
Sbjct: 293 ERLTSLVRTLELTNIEDYQPLQEVATFATLVATYEKGFLLILEPYESDTAEVPNPILHFT 352
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AI+P+FDRF +V+ITSGT+SPL+MYPK+L+F VI S+SMTLAR LPM+
Sbjct: 353 CLDAAIAIRPIFDRFYSVIITSGTISPLEMYPKMLDFSTVIQESYSMTLARRSFLPMI 410
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 126/197 (63%), Gaps = 8/197 (4%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE+ D + + GV++
Sbjct: 44 SVKREKSGSVVDARCRSLTAGFVKEKKERGED--------NLDLLESHNLIPNGVWTFDG 95
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ G E CPYF AR+ + + +V++SYHYLLDPKIA VSK+ ++ +VVFDEAHNI
Sbjct: 96 ILRYGEENKQCPYFTARRMMQYCNVVIFSYHYLLDPKIAERVSKDFSKDCIVVFDEAHNI 155
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I ++ +A Q L+ + +M+E D +L+ EY +LV+GLR+A AR
Sbjct: 156 DNVCIESLSTDITEESLRRATRGAQNLKQKIADMRETDQEQLQNEYEKLVQGLREADEAR 215
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANPVLP+E+L+
Sbjct: 216 QEDAFMANPVLPEELLK 232
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ + F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 420 ISTSFQVRNEPSVVRNYGNLLTEFAKITPDGLVVFFPSYLYMESIISMWQGMGILDEVWK 479
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 480 YKLILVETPDAQET 493
Score = 76.6 bits (187), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYGIM+ AD+RF + KR +LPKWI + L D NLST+ AV ++R+L+ MAQ
Sbjct: 583 VLRGKDDYGIMVLADRRFQK--KRPQLPKWINQGLMDVDVNLSTDMAVSSARRFLKTMAQ 640
Query: 909 PFTREDMLGVALLSLDQLLEK 929
PF ++ G++ + L K
Sbjct: 641 PFRAKEQEGISTWGYEDLERK 661
>gi|168039045|ref|XP_001772009.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676610|gb|EDQ63090.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 750
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/418 (46%), Positives = 264/418 (63%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS E + VD C LT+S VR NI +C +YE ++ G +A L GVY++ L
Sbjct: 120 VSGEGSRESVDAGCRKLTASWVRSLALDNPNIELCPYYEGYEKGGADALLPSGVYTLHDL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ GRE CPYFLAR I A +VVY+Y YLLDPK+A ++SKE+ + VVVFDEAHNID
Sbjct: 180 RGFGREKRWCPYFLARHMIQFANVVVYNYQYLLDPKVAGIISKEMEKECVVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+++LSV I ++T++ A N+ + +++ K D+ +LR+EY+RLVEGL +
Sbjct: 240 NVCIEALSVNIRQQTLDGATRNLSQVTQLIEKSKATDANRLRQEYSRLVEGLAQRGNLAG 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANP LP +ILQE VPGNIR AEHFV FLKR ++Y+K R+ ++V ESP +F+
Sbjct: 300 TDTWLANPALPQDILQEAVPGNIRRAEHFVAFLKRLVQYIKNRMITEKVESESPVSFVTA 359
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ ++ I++K L+FC
Sbjct: 360 LQNQAG--------------------------------------------IDQKSLKFCY 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
+RL SLL TLE+TN +F + + ATLV +YT+GF II+EP+ ++ P +P+PVL
Sbjct: 376 DRLHSLLLTLEVTNTDEFMYIQTVCDFATLVGTYTRGFTIIIEPYDERMPNIPDPVLQLS 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSSLAIKPVF++FQ+VVITSGTLSP+D+YP++LNF PVI +S+ MTL R CL PMV
Sbjct: 436 CLDSSLAIKPVFEKFQSVVITSGTLSPIDLYPRLLNFHPVISNSYKMTLTRDCLCPMV 493
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 134/216 (62%), Gaps = 7/216 (3%)
Query: 636 NLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
L RK L I Q VS E + VD C LT+S VR NI +C +YE
Sbjct: 107 GLSSRKNLCIHPQ-------VSGEGSRESVDAGCRKLTASWVRSLALDNPNIELCPYYEG 159
Query: 696 FDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANV 755
++ G +A L GVY++ L+ GRE CPYFLAR I A +VVY+Y YLLDPK+A +
Sbjct: 160 YEKGGADALLPSGVYTLHDLRGFGREKRWCPYFLARHMIQFANVVVYNYQYLLDPKVAGI 219
Query: 756 VSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAK 815
+SKE+ + VVVFDEAHNIDNVC+++LSV I ++T++ A N+ + +++ K D+ +
Sbjct: 220 ISKEMEKECVVVFDEAHNIDNVCIEALSVNIRQQTLDGATRNLSQVTQLIEKSKATDANR 279
Query: 816 LREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
LR+EY+RLVEGL + TD LANP LP +ILQ
Sbjct: 280 LRQEYSRLVEGLAQRGNLAGTDTWLANPALPQDILQ 315
Score = 147 bits (371), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/120 (61%), Positives = 91/120 (75%), Gaps = 2/120 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M I+ L V+FPYE+IYPEQY YMV+LK+ LDA+GHCLLEMP+GTGKT +LLSLI +YM
Sbjct: 1 MKFKIEGLTVYFPYEFIYPEQYDYMVDLKRTLDARGHCLLEMPTGTGKTITLLSLITSYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+P V KL+YC+RTV E+EKV+EEL +L Y K + M L LSSRKNLCIH +
Sbjct: 61 LANP-SVGKLIYCTRTVHEMEKVLEELRKLQAYQEKALGKAAKMLALGLSSRKNLCIHPQ 119
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 67/103 (65%), Gaps = 1/103 (0%)
Query: 551 VIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDG 610
VI N ++ + C+ P V+ + L + + F+ R D V+RNYG+LL+++ VPDG
Sbjct: 475 VISNSYKMTLTRDCLCP-MVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMVTAVPDG 533
Query: 611 VVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+VCFF SY Y++ +V SW + GI+ + + KL+FIETQD +++
Sbjct: 534 IVCFFVSYSYMDGIVNSWNEMGILQEVMQHKLVFIETQDVVET 576
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 7/116 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ +E D + + V +++ K DYG+MIFADKR+ R DKRSKL
Sbjct: 634 ARL-EYLRETFQIKENDFLTFDAVRQAAQCVGRVIRSKADYGMMIFADKRYNRHDKRSKL 692
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDM-LGVALLSLDQLLEKE 930
P WI +L + NLST+ +V +++ +LR+MAQP+ + L LLS L + E
Sbjct: 693 PGWILSHLREAHLNLSTDMSVHIAREFLRRMAQPYDKTGKGLNATLLSQADLEKME 748
>gi|58258935|ref|XP_566880.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans JEC21]
gi|134107057|ref|XP_777841.1| hypothetical protein CNBA5380 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260539|gb|EAL23194.1| hypothetical protein CNBA5380 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223017|gb|AAW41061.1| general RNA polymerase II transcription factor, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 799
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/419 (46%), Positives = 273/419 (65%), Gaps = 45/419 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITK 59
VSKE+ GKIVD RC LTS+ ++ +A ++P+C F+E+ + + PGVY++
Sbjct: 120 VSKEKKGKIVDSRCRDLTSAFACEKGRADPGSVPLCSFHEELNNYEPGNLIPPGVYTLDD 179
Query: 60 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
+K+ G+E G+CPYF R+ + +++YS+HYLLDPK+A VS E+++ S+V+FDEAHNI
Sbjct: 180 VKKYGQEKGVCPYFTIRRMLPFLDVMIYSFHYLLDPKVAEQVSAEMSKESIVIFDEAHNI 239
Query: 120 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 179
DNVC++SLS+ + R ++ A ++ L + E+KE D+ KL +EYA+LVEGL++A
Sbjct: 240 DNVCIESLSIDLTRPMLDSAARSVNKLSDKIAEIKETDAKKLEDEYAKLVEGLQEANERV 299
Query: 180 ETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLK 239
E D +L +PVL +++ E +PGNIR AEHF+ FLKRFIEYLKTR+RV VV E+P +FL
Sbjct: 300 EDDDMLVSPVLSKDMVDEAIPGNIRKAEHFIAFLKRFIEYLKTRMRVLHVVAETPQSFL- 358
Query: 240 DISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFC 299
LK+I+ I+++PL+F
Sbjct: 359 ----------------------------------------AHLKEIT---YIDQRPLKFA 375
Query: 300 AERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYF 359
+ERL L+RTLE+TNL + S+L + TLV++Y KGF +I+EP+ + TVPNP+ +F
Sbjct: 376 SERLTCLVRTLELTNLEEHSALQKVAGFGTLVATYEKGFLLILEPYETEHATVPNPIFHF 435
Query: 360 CCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD SLAI PVFDRF +VVITSGT+SPLDMYPK+L FQPV+ S+ MTL R LPMV
Sbjct: 436 TCLDPSLAIAPVFDRFASVVITSGTISPLDMYPKMLQFQPVMEQSYPMTLTRNAFLPMV 494
Score = 182 bits (462), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 135/196 (68%), Gaps = 1/196 (0%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITK 714
VSKE+ GKIVD RC LTS+ ++ +A ++P+C F+E+ + + PGVY++
Sbjct: 120 VSKEKKGKIVDSRCRDLTSAFACEKGRADPGSVPLCSFHEELNNYEPGNLIPPGVYTLDD 179
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+K+ G+E G+CPYF R+ + +++YS+HYLLDPK+A VS E+++ S+V+FDEAHNI
Sbjct: 180 VKKYGQEKGVCPYFTIRRMLPFLDVMIYSFHYLLDPKVAEQVSAEMSKESIVIFDEAHNI 239
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + R ++ A ++ L + E+KE D+ KL +EYA+LVEGL++A
Sbjct: 240 DNVCIESLSIDLTRPMLDSAARSVNKLSDKIAEIKETDAKKLEDEYAKLVEGLQEANERV 299
Query: 835 ETDVVLANPVLPDEIL 850
E D +L +PVL +++
Sbjct: 300 EDDDMLVSPVLSKDMV 315
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/120 (60%), Positives = 89/120 (74%), Gaps = 2/120 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M M+ DLPV FPY+ +YPEQY+YM +LK LDA GHC+LEMPSGTGKT SLLSLI+AYM
Sbjct: 1 MKFMLGDLPVLFPYDRLYPEQYSYMADLKTTLDAGGHCVLEMPSGTGKTVSLLSLIIAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN-EEINMTGLVLSSRKNLCIHSE 542
+P + KL+YCSRTVPEIEK + EL RL Y + + + GL L+SR+NLC+H E
Sbjct: 61 QFYP-NKRKLIYCSRTVPEIEKALAELKRLMMYRAEMGANDGDFRGLGLTSRRNLCLHPE 119
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 82/123 (66%), Gaps = 7/123 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GKTD+G+M+FADKRFAR DKR+KL
Sbjct: 635 ARL-EFLRDNHRIRENDYLTFDAMRHAAQCVGRVLRGKTDWGLMVFADKRFARQDKRAKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI Y+T+ +NLST+ AV L+K+++RQ++QPF G++L +L+ + E++ +
Sbjct: 694 PKWINSYITEAHSNLSTDVAVSLAKKFIRQISQPFDHTQT-GISLWTLEDIEERQRRDKD 752
Query: 936 EEE 938
E E
Sbjct: 753 EAE 755
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +L+++A VPDGVV FF SYLY+ES+V++WYD GI+ + K
Sbjct: 504 ISSRFEVRNDPAVVRNFGSILIEMARTVPDGVVAFFPSYLYMESIVSAWYDMGILSEVWK 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KLLF+ET DA+++ + +GR L S + R K E I
Sbjct: 564 HKLLFVETPDAMETSIALRNYREACNNGRGAVLLSVA---RGKVSEGI 608
>gi|354544295|emb|CCE41018.1| hypothetical protein CPAR2_300070 [Candida parapsilosis]
Length = 794
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 212/516 (41%), Positives = 300/516 (58%), Gaps = 87/516 (16%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAG-----------ENIPVCDFYEKFDAVGREAP 49
+S+E+ G +VD C +T+ ++++ + G +C F+EK +
Sbjct: 120 ISREKKGNVVDEMCRRVTNGQLKEKIEKGVVTEEDQIQDPAKYSLCSFHEKLYDLDPHDL 179
Query: 50 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 109
+ GVYS L +E+G CPYF AR+ I I++YSYHYLLDPKIA+ VS+EL++ S
Sbjct: 180 IPQGVYSFDALIRYCKEMGTCPYFTARRMIPFCNIIIYSYHYLLDPKIADRVSRELSKDS 239
Query: 110 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 169
+++FDEAHNIDNVC++SLS+ + +++A L +++MK DS KL+ EY +LV
Sbjct: 240 IIIFDEAHNIDNVCIESLSLDLTEDVLKRATRGANKLADAVEDMKAQDSEKLQNEYEQLV 299
Query: 170 EGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQV 229
EGLR A+ RE ++ ++NP+LP ++L E +PGNIR EHFV FLKRFIEYLKTR++V V
Sbjct: 300 EGLRQAEVEREQEMFMSNPILPQDLLDEAIPGNIRKGEHFVAFLKRFIEYLKTRMKVLHV 359
Query: 230 VQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKV 289
+ E+P +FL +HLK
Sbjct: 360 ISETPTSFL-----------------------QHLK---------------------ELT 375
Query: 290 CIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKA 349
I++KPL+FC+ERL+ L++TLE+T + DF++L I ATLVS+Y GF +I+EPF +
Sbjct: 376 YIDKKPLKFCSERLSLLVKTLELTEIEDFNALKDIATFATLVSTYDTGFQLILEPFETEG 435
Query: 350 PTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTL 409
TVPNP+L+F CLD+S+AIKPVF+RF +V+ITSGT+SPLDMYPK+LNFQ VI S++MTL
Sbjct: 436 STVPNPMLHFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPKMLNFQTVIQESYAMTL 495
Query: 410 ARPCLLPM----------------------VRENYAMGLMI-------DDLPVFFPYEYI 440
AR LPM V NY L+I D + VFFP Y+
Sbjct: 496 ARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYG-SLLIEFAKITPDGMVVFFP-SYL 553
Query: 441 YPEQYAYMVELKKALD-AKGHCLLEMPSGTGKTTSL 475
Y E M + LD H L+ + + + TSL
Sbjct: 554 YMESIISMWQTMGVLDEVWKHKLILVETPDAQETSL 589
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 129/206 (62%), Gaps = 11/206 (5%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAG-----------ENIPVCDFYEKFDAVGREAP 704
+S+E+ G +VD C +T+ ++++ + G +C F+EK +
Sbjct: 120 ISREKKGNVVDEMCRRVTNGQLKEKIEKGVVTEEDQIQDPAKYSLCSFHEKLYDLDPHDL 179
Query: 705 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 764
+ GVYS L +E+G CPYF AR+ I I++YSYHYLLDPKIA+ VS+EL++ S
Sbjct: 180 IPQGVYSFDALIRYCKEMGTCPYFTARRMIPFCNIIIYSYHYLLDPKIADRVSRELSKDS 239
Query: 765 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 824
+++FDEAHNIDNVC++SLS+ + +++A L +++MK DS KL+ EY +LV
Sbjct: 240 IIIFDEAHNIDNVCIESLSLDLTEDVLKRATRGANKLADAVEDMKAQDSEKLQNEYEQLV 299
Query: 825 EGLRDAQSARETDVVLANPVLPDEIL 850
EGLR A+ RE ++ ++NP+LP ++L
Sbjct: 300 EGLRQAEVEREQEMFMSNPILPQDLL 325
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/118 (55%), Positives = 84/118 (71%), Gaps = 2/118 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM ++KK LD G+C+LEMPSGTGKT SLLSL VAY
Sbjct: 1 MKFYIDDLPVLFPYPRIYPEQYAYMSDIKKTLDVGGNCILEMPSGTGKTISLLSLTVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL +L ++ + + GL L+SRKNLC++
Sbjct: 61 MHYP-EHRKIVYCSRTMSEIEKALIELHKLMEFRASELGYVEDFRGLGLTSRKNLCLN 117
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D SV+RNYG LL++ A + PDG+V FF SYLY+ES+++ W G++D + K
Sbjct: 514 ISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLYMESIISMWQTMGVLDEVWK 573
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 574 HKLILVETPDAQETSLALETYRKACSNGRGAVLLSVA---RGKVSEGI 618
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%), Gaps = 2/78 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYGIM+ AD+RFAR K+++LPKWI + L D+ TNLST+ A+ +K++LR +AQ
Sbjct: 677 VLRGKDDYGIMVLADRRFAR--KKAQLPKWIAQALNDSDTNLSTDMALATAKKFLRSLAQ 734
Query: 909 PFTREDMLGVALLSLDQL 926
P +D GV++ +DQL
Sbjct: 735 PTNPKDQEGVSVWDIDQL 752
>gi|448115115|ref|XP_004202752.1| Piso0_001608 [Millerozyma farinosa CBS 7064]
gi|359383620|emb|CCE79536.1| Piso0_001608 [Millerozyma farinosa CBS 7064]
Length = 795
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/429 (44%), Positives = 273/429 (63%), Gaps = 55/429 (12%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVR-----------DRHKAGENIPVCDFYEKFDAVGREAP 49
VSKE G +VD +C +T+ ++ D+ + E +C ++E+ + + +
Sbjct: 120 VSKEPKGVVVDEKCRRITNGQLKQQIENGKVSEEDQKRHPETKQLCSYHEELNDMEQHNL 179
Query: 50 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 109
+ GVYS L + G CPYF R+ I + I++YSYHYLLDPKIA VSK+++R S
Sbjct: 180 IPAGVYSFDALTNYCKARGTCPYFTVRRMIPYCNIIIYSYHYLLDPKIAERVSKDISRDS 239
Query: 110 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 169
+++FDEAHNIDNVC++SLS+ + T+++A L + +MK DS KL+ EY +LV
Sbjct: 240 IIIFDEAHNIDNVCIESLSLDLTDDTLQRATRGATKLGDAIDDMKSQDSEKLQNEYEKLV 299
Query: 170 EGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQV 229
EGLR ++ RE ++ ++NP+LP ++L E VPGNIR EHF+ FLKRFIEYLKTR++V V
Sbjct: 300 EGLRQSEIEREEELFMSNPILPKDLLDEAVPGNIRKGEHFISFLKRFIEYLKTRMKVLHV 359
Query: 230 VQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKV 289
+ E+P +FL +HLK TF
Sbjct: 360 ISETPTSFL-----------------------QHLKD------------LTF-------- 376
Query: 290 CIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKA 349
I+RKPLRFC+ERL+ L+RTLE+T + DF++L I ATLVS+Y GF +I+EPF +
Sbjct: 377 -IDRKPLRFCSERLSLLVRTLELTEIEDFTALKDIATFATLVSTYETGFQLILEPFETEG 435
Query: 350 PTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTL 409
+VPNP+L+F CLD+S+AIKPVFDRF +V+ITSGT+SPLDMYP++LNFQ VI S+++TL
Sbjct: 436 SSVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPRMLNFQTVIQESYTITL 495
Query: 410 ARPCLLPMV 418
AR LPM+
Sbjct: 496 ARRSFLPMI 504
Score = 172 bits (436), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 129/207 (62%), Gaps = 11/207 (5%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVR-----------DRHKAGENIPVCDFYEKFDAVGREA 703
SVSKE G +VD +C +T+ ++ D+ + E +C ++E+ + + +
Sbjct: 119 SVSKEPKGVVVDEKCRRITNGQLKQQIENGKVSEEDQKRHPETKQLCSYHEELNDMEQHN 178
Query: 704 PLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARS 763
+ GVYS L + G CPYF R+ I + I++YSYHYLLDPKIA VSK+++R
Sbjct: 179 LIPAGVYSFDALTNYCKARGTCPYFTVRRMIPYCNIIIYSYHYLLDPKIAERVSKDISRD 238
Query: 764 SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARL 823
S+++FDEAHNIDNVC++SLS+ + T+++A L + +MK DS KL+ EY +L
Sbjct: 239 SIIIFDEAHNIDNVCIESLSLDLTDDTLQRATRGATKLGDAIDDMKSQDSEKLQNEYEKL 298
Query: 824 VEGLRDAQSARETDVVLANPVLPDEIL 850
VEGLR ++ RE ++ ++NP+LP ++L
Sbjct: 299 VEGLRQSEIEREEELFMSNPILPKDLL 325
Score = 129 bits (325), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/120 (55%), Positives = 84/120 (70%), Gaps = 6/120 (5%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLP+ FPY IYPEQY+YM ++K+ LD G+C+LEMPSGTGKT SLLS+ VAY
Sbjct: 1 MKFYIDDLPILFPYPKIYPEQYSYMCDIKRTLDVGGNCILEMPSGTGKTISLLSITVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY---YIKHNEEINMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL L Y + + EE GL L+SRKNLC+H
Sbjct: 61 MHYP-EHRKVVYCSRTMSEIEKALIELHNLMKYRAEQLGYVEEFR--GLGLTSRKNLCLH 117
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 75/115 (65%), Gaps = 8/115 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GK DYGIM+ AD+RF+R K+S+L
Sbjct: 645 ARL-EFLRDHFQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFSR--KKSQL 701
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKE 930
PKWI + L D+ TNLST+ A+ +K++LR +AQP +D GV++ + +QLL+ +
Sbjct: 702 PKWIAQALLDSDTNLSTDMALANAKKFLRSLAQPTNPKDQEGVSVWNYEQLLKHQ 756
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D SV+RNYG L+++ + + PDG+V FF SYLY+ES+++ W + G++D + K
Sbjct: 514 ISSRFEIRNDPSVVRNYGSLVIEFSKITPDGMVVFFPSYLYMESIISMWQNMGVLDEVWK 573
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 574 YKLILVETPDAQETSLALETFRKACSNGRGAVLLSVA---RGKVSEGI 618
>gi|356559661|ref|XP_003548117.1| PREDICTED: DNA repair helicase UVH6-like [Glycine max]
Length = 758
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/417 (45%), Positives = 262/417 (62%), Gaps = 46/417 (11%)
Query: 2 SKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLK 61
++ RD VD C LT+S VR +P C+F+E+++ G A L PGVY++ L+
Sbjct: 124 AENRDS--VDAGCRKLTASWVRAVAAENPGVPTCEFFEQYERAGSSAVLPPGVYTLQDLR 181
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121
G+E G CPY+LAR + A +VVYSY YLLDPK+A ++SKE+ + SVVVFDEAHNIDN
Sbjct: 182 VYGKEKGWCPYYLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDN 241
Query: 122 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARET 181
VC+++LSV + R+TIE A N+ + + + K D+ +LR EY RLVEGL T
Sbjct: 242 VCIEALSVSVRRQTIEGARRNLNRMRQEIDKFKATDAGRLRAEYNRLVEGLALRGDLPAT 301
Query: 182 DVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDI 241
D LANP LPD+IL+E VPGNIR AEHF+ L+R ++YL+ RL + V +ESP +F+ I
Sbjct: 302 DAWLANPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKESPVSFVVSI 361
Query: 242 SSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAE 301
+ I++K L+FC +
Sbjct: 362 LNHAG--------------------------------------------IDQKALKFCYD 377
Query: 302 RLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCC 361
RL SL+ TLEIT+ +F + I ATLV +Y +GF+II+EPF ++ P +P+PVL CC
Sbjct: 378 RLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEPFDERMPHIPDPVLQLCC 437
Query: 362 LDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
D+SLAIKPVF+RFQ+VVITSGTLSP+D+YP++LNF PV+ SF+M+L R C+ PMV
Sbjct: 438 HDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRSFTMSLTRDCICPMV 494
Score = 196 bits (498), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 94/195 (48%), Positives = 128/195 (65%), Gaps = 2/195 (1%)
Query: 657 SKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLK 716
++ RD VD C LT+S VR +P C+F+E+++ G A L PGVY++ L+
Sbjct: 124 AENRDS--VDAGCRKLTASWVRAVAAENPGVPTCEFFEQYERAGSSAVLPPGVYTLQDLR 181
Query: 717 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 776
G+E G CPY+LAR + A +VVYSY YLLDPK+A ++SKE+ + SVVVFDEAHNIDN
Sbjct: 182 VYGKEKGWCPYYLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDN 241
Query: 777 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARET 836
VC+++LSV + R+TIE A N+ + + + K D+ +LR EY RLVEGL T
Sbjct: 242 VCIEALSVSVRRQTIEGARRNLNRMRQEIDKFKATDAGRLRAEYNRLVEGLALRGDLPAT 301
Query: 837 DVVLANPVLPDEILQ 851
D LANP LPD+IL+
Sbjct: 302 DAWLANPALPDDILK 316
Score = 145 bits (366), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 93/130 (71%), Gaps = 4/130 (3%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M I+D+ V+FPY+ IYPEQY+YMVELK+ALDAKGHCLLEMP+GTGKT +LLSLI +Y+
Sbjct: 1 MKFEIEDITVYFPYDNIYPEQYSYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+ P KLLYC+RTV E+EK + EL L DY ++H + L LSSRKNLC++
Sbjct: 61 LSKPHSPLKLLYCTRTVHEMEKTLAELRLLHDYQLRHLGPAAKILALGLSSRKNLCVNPR 120
Query: 543 F---ETRDDI 549
E RD +
Sbjct: 121 VLAAENRDSV 130
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ + L + + F+ R D+ V+RNYG+LL+++A VVPDG+VCFF SY Y++
Sbjct: 489 CICP-MVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMASVVPDGIVCFFVSYSYMDG 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+V +W + GI+ + + KL+FIETQD +++
Sbjct: 548 IVNTWNENGILKEIMQHKLVFIETQDVVET 577
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 69/114 (60%), Gaps = 6/114 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD +E D + + + +++ K DYG+MIFADKR++R DKRSKL
Sbjct: 635 ARL-EYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEK 929
P WI +L D NLST+ A+ +++ +LR+MAQP+ + G L + LEK
Sbjct: 694 PSWILSHLHDAHLNLSTDMALHIAREFLRKMAQPYDKTGGTGRKTLLSQEDLEK 747
>gi|356499550|ref|XP_003518602.1| PREDICTED: DNA repair helicase UVH6-like [Glycine max]
Length = 758
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/417 (45%), Positives = 263/417 (63%), Gaps = 46/417 (11%)
Query: 2 SKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLK 61
++ RD VD C LT+S VR ++P C+F+E+++ G A L PGVY++ L+
Sbjct: 124 AENRDS--VDAGCRKLTASWVRAVAAENPSVPSCEFFEQYERAGSSAVLPPGVYTLQDLR 181
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121
G+E G CPY+LAR + A +VVYSY YLLDPK+A ++SKE+ + SVVVFDEAHNIDN
Sbjct: 182 AYGKEKGWCPYYLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDN 241
Query: 122 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARET 181
VC+++LSV + R+TIE A N+ + + + K D+ +LR EY RLVEGL T
Sbjct: 242 VCIEALSVSVRRQTIEGARRNLSRMRQEIDKFKATDAGRLRAEYNRLVEGLALRGDLPAT 301
Query: 182 DVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDI 241
D LANP LPD+IL+E VPGNIR AEHF+ L+R ++YL+ RL + V +ESP +F+ I
Sbjct: 302 DAWLANPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKESPVSFVVSI 361
Query: 242 SSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAE 301
+ I++K L+FC +
Sbjct: 362 LNHAG--------------------------------------------IDQKSLKFCYD 377
Query: 302 RLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCC 361
RL SL+ TLEIT+ +F + I ATLV +Y +GF+II+EPF ++ P +P+PVL CC
Sbjct: 378 RLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEPFDERMPHIPDPVLQLCC 437
Query: 362 LDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
D+SLAIKPVF+RFQ+VVITSGTLSP+D+YP++LNF PV+ SF+M+L R C+ PMV
Sbjct: 438 HDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRSFTMSLTRDCICPMV 494
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 94/195 (48%), Positives = 129/195 (66%), Gaps = 2/195 (1%)
Query: 657 SKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLK 716
++ RD VD C LT+S VR ++P C+F+E+++ G A L PGVY++ L+
Sbjct: 124 AENRDS--VDAGCRKLTASWVRAVAAENPSVPSCEFFEQYERAGSSAVLPPGVYTLQDLR 181
Query: 717 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 776
G+E G CPY+LAR + A +VVYSY YLLDPK+A ++SKE+ + SVVVFDEAHNIDN
Sbjct: 182 AYGKEKGWCPYYLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDN 241
Query: 777 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARET 836
VC+++LSV + R+TIE A N+ + + + K D+ +LR EY RLVEGL T
Sbjct: 242 VCIEALSVSVRRQTIEGARRNLSRMRQEIDKFKATDAGRLRAEYNRLVEGLALRGDLPAT 301
Query: 837 DVVLANPVLPDEILQ 851
D LANP LPD+IL+
Sbjct: 302 DAWLANPALPDDILK 316
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 93/130 (71%), Gaps = 4/130 (3%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L I+D+ V+FPY+ IYPEQY+YMVELK+ALDAKGHCLLEMP+GTGKT +LLSLI +Y+
Sbjct: 1 MKLEIEDITVYFPYDKIYPEQYSYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+ P KLLYC+RTV E+EK + EL L Y ++H + L LSSRKNLC++
Sbjct: 61 LSKPHSPLKLLYCTRTVHEMEKTLAELRLLHHYQLRHLGPAAKILALGLSSRKNLCVNPR 120
Query: 543 F---ETRDDI 549
E RD +
Sbjct: 121 VLAAENRDSV 130
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ + L + + F+ R D+ V+RNYG+LL+++A VVPDG+VCFF SY Y++
Sbjct: 489 CICP-MVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMASVVPDGIVCFFVSYSYMDG 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+V +W + GI+ + + KL+FIETQD +++
Sbjct: 548 IVNTWNENGILKEIMQHKLVFIETQDVVET 577
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 69/114 (60%), Gaps = 6/114 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD +E D + + + +++ K DYG+MIFADKR++R DKRSKL
Sbjct: 635 ARL-EYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEK 929
P WI +L D NLST+ A+ +++ +LR+MAQP+ + G L + LEK
Sbjct: 694 PSWILSHLHDAHLNLSTDMALHVARDFLRKMAQPYDKTGGTGRKTLLSQEDLEK 747
>gi|392575737|gb|EIW68869.1| hypothetical protein TREMEDRAFT_30972 [Tremella mesenterica DSM
1558]
Length = 796
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/419 (45%), Positives = 272/419 (64%), Gaps = 45/419 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITK 59
VSKE+ GKIVD RC LTS+ ++ +A ++P+C ++E+ + + PGVY++
Sbjct: 120 VSKEKKGKIVDSRCRDLTSAFACEKGRAEPGSVPLCSYHEELNNYETGNLIPPGVYTLDD 179
Query: 60 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
+K+ G+E G CPYF R+ + I++YS+HYLLDPK+A VS E+++ S+VVFDEAHNI
Sbjct: 180 VKKWGQEKGTCPYFTIRRMMPFVDIIIYSFHYLLDPKVAENVSAEMSKESIVVFDEAHNI 239
Query: 120 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 179
DNVC++SLS+ + R ++ A ++ + ++EMK D+ KL++EY +LV GL++A R
Sbjct: 240 DNVCIESLSIDLTRPMLDSAARSVNKISDKIEEMKRTDATKLQDEYEKLVAGLQEANERR 299
Query: 180 ETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLK 239
E + +LA+PVL ++L+E +PGNIR AEHF+ FLKRFIEY+KTR+RV VV E+P +FL
Sbjct: 300 EDEDMLASPVLSTDLLEEAMPGNIRKAEHFIAFLKRFIEYMKTRMRVLHVVAETPQSFLA 359
Query: 240 DISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFC 299
HLK TF IER+PL+F
Sbjct: 360 -----------------------HLKE------------ITF---------IERRPLKFA 375
Query: 300 AERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYF 359
AERL +L+RTLE+TN+ + +L + TLV++Y KGF +I+EP+ + TVPNP+ +
Sbjct: 376 AERLTNLVRTLELTNIDEHYALQKVAGFGTLVATYEKGFLLILEPYETEHATVPNPIFHM 435
Query: 360 CCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD SLAI PVF+RF +VVITSGT+SPLDMYPKIL FQP ++ S+ MTL R PMV
Sbjct: 436 TCLDPSLAIAPVFERFSSVVITSGTISPLDMYPKILQFQPTLIQSYPMTLTRNAFFPMV 494
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 136/197 (69%), Gaps = 1/197 (0%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITK 714
VSKE+ GKIVD RC LTS+ ++ +A ++P+C ++E+ + + PGVY++
Sbjct: 120 VSKEKKGKIVDSRCRDLTSAFACEKGRAEPGSVPLCSYHEELNNYETGNLIPPGVYTLDD 179
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+K+ G+E G CPYF R+ + I++YS+HYLLDPK+A VS E+++ S+VVFDEAHNI
Sbjct: 180 VKKWGQEKGTCPYFTIRRMMPFVDIIIYSFHYLLDPKVAENVSAEMSKESIVVFDEAHNI 239
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + R ++ A ++ + ++EMK D+ KL++EY +LV GL++A R
Sbjct: 240 DNVCIESLSIDLTRPMLDSAARSVNKISDKIEEMKRTDATKLQDEYEKLVAGLQEANERR 299
Query: 835 ETDVVLANPVLPDEILQ 851
E + +LA+PVL ++L+
Sbjct: 300 EDEDMLASPVLSTDLLE 316
Score = 159 bits (401), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 94/120 (78%), Gaps = 2/120 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M MIDDLPV FPY+ IYPEQY+YM +LKK LDA GHC+LEMPSGTGKT SLLSLIV+YM
Sbjct: 1 MKFMIDDLPVLFPYDRIYPEQYSYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIVSYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN-EEINMTGLVLSSRKNLCIHSE 542
+P+ KL+YCSRTVPEIEK + EL RL +Y ++ ++ + GL L+SR+NLC+H E
Sbjct: 61 QFYPVK-RKLIYCSRTVPEIEKALAELKRLMEYRVEMGAKDEDFRGLGLTSRRNLCLHPE 119
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 81/123 (65%), Gaps = 7/123 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GKTD+G+M+FADKRFAR DKR+KL
Sbjct: 635 ARL-EFLRDNHRIRENDYLTFDAMRHAAQCVGRVLRGKTDWGLMVFADKRFARQDKRAKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
P WI +Y+T +NLST+ A+ L+K+++RQ++QP+ G++L +L+ + E++ E
Sbjct: 694 PLWINQYITGAHSNLSTDMAIVLAKKFIRQISQPWDHTQT-GISLWTLEDIEERQRKAEE 752
Query: 936 EEE 938
E E
Sbjct: 753 EAE 755
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +L+D++ VPDG+V FF SYLY+ES+V++WYD GI+ + K
Sbjct: 504 ISSRFEVRNDPAVVRNFGSILIDMSKTVPDGIVAFFPSYLYMESIVSAWYDMGILSEVWK 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KLLF+ET DA+++ K +GR + S + R K E I
Sbjct: 564 HKLLFVETPDAMETSVALKNYREACNNGRGAVMLSVA---RGKVSEGI 608
>gi|239607217|gb|EEQ84204.1| DNA repair helicase RAD3 [Ajellomyces dermatitidis ER-3]
Length = 779
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/418 (47%), Positives = 267/418 (63%), Gaps = 62/418 (14%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT AG N+ D E + V PGV+++ +
Sbjct: 120 VKREKSGAVVDARCRSLT---------AGFNL---DLLEPSNLV------PPGVFTLDDI 161
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G + CPYF R+ + +++YSYHYLLDPKIA VS+EL++ S+VVFDEAHNID
Sbjct: 162 IKYGEQHKQCPYFSIRRMMPFCNVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNID 221
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA LE ++EMK +D+ KL+ EY +LVEGLR+A AR+
Sbjct: 222 NVCIESLSIDLTEDSLRKASRGATNLERKIEEMKSSDAEKLQNEYQKLVEGLREADEARQ 281
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ ++ANP LPD++L+E VPGNIR AEHFV FLKRFIEYLKTR+++ + E+P +FL
Sbjct: 282 EEQLMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKITHTISETPLSFL-- 339
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
LKD++ IERKPLRFCA
Sbjct: 340 ---------------------------------------AHLKDLT---FIERKPLRFCA 357
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERLASL+RTLE+ NL D+ L + ATL ++Y KGF +I+EPF + TVPNP+L+F
Sbjct: 358 ERLASLVRTLELMNLEDYQPLQQVAAFATLAATYEKGFLLILEPFESETATVPNPILHFT 417
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V++TSGTLSPL+MYPK+L F V+ S++MTLAR LPMV
Sbjct: 418 CLDAAIAIKPVFDRFSSVIVTSGTLSPLEMYPKMLKFTTVLQESYTMTLARRSFLPMV 475
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 127/197 (64%), Gaps = 18/197 (9%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT AG N+ D E + V PGV+++
Sbjct: 119 SVKREKSGAVVDARCRSLT---------AGFNL---DLLEPSNLV------PPGVFTLDD 160
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ + G + CPYF R+ + +++YSYHYLLDPKIA VS+EL++ S+VVFDEAHNI
Sbjct: 161 IIKYGEQHKQCPYFSIRRMMPFCNVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNI 220
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA LE ++EMK +D+ KL+ EY +LVEGLR+A AR
Sbjct: 221 DNVCIESLSIDLTEDSLRKASRGATNLERKIEEMKSSDAEKLQNEYQKLVEGLREADEAR 280
Query: 835 ETDVVLANPVLPDEILQ 851
+ + ++ANP LPD++L+
Sbjct: 281 QEEQLMANPALPDDLLK 297
Score = 145 bits (366), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 78/142 (54%), Positives = 90/142 (63%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT SLLSLI+AY
Sbjct: 1 MQFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIIAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
P + KL+YCSRT+ EIEK + EL L Y + + GL L+SRKNLC+H
Sbjct: 61 QHRP-EQRKLIYCSRTMSEIEKALAELKALMKYRTRQLGYAEDFRGLGLTSRKNLCLHP- 118
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 -------SVKREKSGAVVDARC 133
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 75/123 (60%), Gaps = 10/123 (8%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +++GK DYG+M+ AD+RF + +RS+L
Sbjct: 616 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVIRGKDDYGVMVLADRRFQK--RRSQL 672
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + ++ TNLST+ AV +K +LR MAQPF D G++ SL L + H + +
Sbjct: 673 PKWISQAMLESETNLSTDMAVATAKSFLRTMAQPFKSRDQEGISTWSLADL--ELHVKKQ 730
Query: 936 EEE 938
+EE
Sbjct: 731 KEE 733
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 52/74 (70%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG LL++ + + PDG+V FF SYLY+ES+++ W GI+D +
Sbjct: 485 ISSSFQIRNDPGVVRNYGNLLLEFSRITPDGIVVFFPSYLYMESIISMWQGMGILDLVWN 544
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ +S
Sbjct: 545 YKLILVETPDSQES 558
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISV---IRN 595
I S F+ R+D V+RNYG LL++ + + PDG+V FF SYLY+ES+ + + + N
Sbjct: 485 ISSSFQIRNDPGVVRNYGNLLLEFSRITPDGIVVFFPSYLYMESIISMWQGMGILDLVWN 544
Query: 596 YGQLLVD 602
Y +LV+
Sbjct: 545 YKLILVE 551
>gi|384253341|gb|EIE26816.1| DNA repair helicase [Coccomyxa subellipsoidea C-169]
Length = 771
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/433 (45%), Positives = 274/433 (63%), Gaps = 59/433 (13%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS+E + D +C LT+S VR+ H +I C FYE +A G E + PGVY++ +
Sbjct: 124 VSEEGSRESCDSQCRKLTASWVREAHVTNPDIETCTFYEGLEAAGAEGVMEPGVYTLQDM 183
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPK---------IANVVSKELARSSVV 111
+E GR+ G CPYF AR + A ++VY+Y Y+LDPK ++N+VS+EL + VV
Sbjct: 184 REYGRKKGWCPYFTARHMLAFANVMVYNYQYMLDPKASNAATLPPVSNMVSRELEKECVV 243
Query: 112 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEG 171
VFDEAHNIDNVC+++LSV + R+T++ A+ N+ L+ + + K D +L+ EY RL+ G
Sbjct: 244 VFDEAHNIDNVCIEALSVTLRRQTLDSAMRNVGKLKAAVDKCKATDEQRLKAEYQRLIGG 303
Query: 172 LRDAQS---ARET---DVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLR 225
L++ + R T + LANP LP++IL+E VPGNIR AEHF FLKR +E+LK R+
Sbjct: 304 LQERGALPRGRPTPGGEDWLANPALPEDILREAVPGNIRRAEHFCAFLKRLVEHLKGRIS 363
Query: 226 VQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDI 285
VQ V QES TFL +QES A
Sbjct: 364 VQAVEQESCTTFLA---------------------------------TLQESMA------ 384
Query: 286 SSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPF 345
++ K LRFC +RL+SLL+TLEIT++ DF+ + ++ ATLV +Y KGFAIIVEP+
Sbjct: 385 -----VDGKTLRFCYDRLSSLLKTLEITDMDDFTPIHLVADFATLVGTYAKGFAIIVEPY 439
Query: 346 SDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSF 405
D+ P+VP+PV+ CLD+SLA++PVF +FQTVVITSGTLSP+D+YP+ILNF PV + SF
Sbjct: 440 DDRLPSVPDPVIQLSCLDASLAVRPVFQKFQTVVITSGTLSPIDLYPRILNFNPVAIQSF 499
Query: 406 SMTLARPCLLPMV 418
+MTL R C+ P+V
Sbjct: 500 AMTLTRDCMCPVV 512
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 133/211 (63%), Gaps = 15/211 (7%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS+E + D +C LT+S VR+ H +I C FYE +A G E + PGVY++ +
Sbjct: 124 VSEEGSRESCDSQCRKLTASWVREAHVTNPDIETCTFYEGLEAAGAEGVMEPGVYTLQDM 183
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPK---------IANVVSKELARSSVV 766
+E GR+ G CPYF AR + A ++VY+Y Y+LDPK ++N+VS+EL + VV
Sbjct: 184 REYGRKKGWCPYFTARHMLAFANVMVYNYQYMLDPKASNAATLPPVSNMVSRELEKECVV 243
Query: 767 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEG 826
VFDEAHNIDNVC+++LSV + R+T++ A+ N+ L+ + + K D +L+ EY RL+ G
Sbjct: 244 VFDEAHNIDNVCIEALSVTLRRQTLDSAMRNVGKLKAAVDKCKATDEQRLKAEYQRLIGG 303
Query: 827 LRDAQS---ARET---DVVLANPVLPDEILQ 851
L++ + R T + LANP LP++IL+
Sbjct: 304 LQERGALPRGRPTPGGEDWLANPALPEDILR 334
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/122 (60%), Positives = 91/122 (74%), Gaps = 6/122 (4%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M +I+ L V+FPY+YIYPEQ+ YM+ELK ALDAKGHCLLEMP+GTGKT +LLSLI +Y
Sbjct: 1 MRFVIEGLTVYFPYDYIYPEQFQYMLELKHALDAKGHCLLEMPTGTGKTITLLSLITSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMT-----GLVLSSRKNLC 538
AHP +V KL+YC+RTVPE+EKV+ EL L Y ++ E M L LSSRKNLC
Sbjct: 61 LAHP-EVGKLIYCTRTVPEMEKVLAELKELVHYRDRYFHEPGMEPPKILALGLSSRKNLC 119
Query: 539 IH 540
+H
Sbjct: 120 VH 121
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 56/74 (75%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ + F+ R+D +VIRNYG++LV++A +PDG+VCFF SY Y++ +V+ W D GI+ +L
Sbjct: 522 VSTAFDMREDENVIRNYGRMLVELAAAIPDGIVCFFVSYSYMDKIVSKWNDMGILQDLMA 581
Query: 640 RKLLFIETQDALDS 653
KL+FIET D +++
Sbjct: 582 HKLVFIETVDVVET 595
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 60/95 (63%), Gaps = 6/95 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ +E+D + + V +++ K DYG+M+FADKR+ R+DKR KL
Sbjct: 653 ARL-EYLRETFQIKESDYLSFDAVRQAAQCVGRVIRSKADYGLMVFADKRYQRADKRDKL 711
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPF 910
P WI +L D NLST+ + +++ ++R MAQP+
Sbjct: 712 PGWITTHLKDAHLNLSTDMLMHIAREFMRAMAQPY 746
>gi|406605469|emb|CCH43113.1| DNA excision repair protein [Wickerhamomyces ciferrii]
Length = 781
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/420 (45%), Positives = 275/420 (65%), Gaps = 46/420 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE--NIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKE+ G IVD +C +TS + + ++GE N+ +C+F+E + + + PGVYS
Sbjct: 120 VSKEKKGSIVDEKCRRMTSGLAKRKIESGETENVDLCEFHENLYELEPDNLVPPGVYSFD 179
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
L ++ CPYF R+ I I++YSYHYLLDPKI+ VSKEL++ S+++FDEAHN
Sbjct: 180 SLTNYCKDQKTCPYFTVRRMIPFCNIIIYSYHYLLDPKISERVSKELSKDSIIIFDEAHN 239
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ +N ++KA +L ++E+K+ DS KL++EY +LV GL A
Sbjct: 240 IDNVCIESLSLDLNNDVLKKASKGANSLSKRIEEVKKTDSKKLQDEYEKLVSGLSAADII 299
Query: 179 RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL 238
++ PVL +++L+E +PGNIR AEHFV FLKRFIEYLKTR++V V+ E+P +FL
Sbjct: 300 NNEQQMMETPVLSEDLLKEAIPGNIRRAEHFVSFLKRFIEYLKTRMKVLHVISETPTSFL 359
Query: 239 KDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRF 298
+H+K TF IERKPLRF
Sbjct: 360 -----------------------QHVKQ------------LTF---------IERKPLRF 375
Query: 299 CAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLY 358
C+ERL+ L+RTLEIT++ D+++L + ATLVS+Y +GFA+I+EP+ + TVPNP+L
Sbjct: 376 CSERLSLLVRTLEITDVEDYNALKDVATFATLVSTYEQGFALILEPYETENATVPNPILR 435
Query: 359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
F CLD+S+AIKP+F+RF +V+ITSGT+SPLDMYP++LNF+ VI S+SMTLA+ LP+V
Sbjct: 436 FTCLDASIAIKPIFERFSSVIITSGTISPLDMYPRMLNFETVIQESYSMTLAKRSFLPLV 495
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 128/199 (64%), Gaps = 2/199 (1%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGE--NIPVCDFYEKFDAVGREAPLAPGVYSI 712
+VSKE+ G IVD +C +TS + + ++GE N+ +C+F+E + + + PGVYS
Sbjct: 119 TVSKEKKGSIVDEKCRRMTSGLAKRKIESGETENVDLCEFHENLYELEPDNLVPPGVYSF 178
Query: 713 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAH 772
L ++ CPYF R+ I I++YSYHYLLDPKI+ VSKEL++ S+++FDEAH
Sbjct: 179 DSLTNYCKDQKTCPYFTVRRMIPFCNIIIYSYHYLLDPKISERVSKELSKDSIIIFDEAH 238
Query: 773 NIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS 832
NIDNVC++SLS+ +N ++KA +L ++E+K+ DS KL++EY +LV GL A
Sbjct: 239 NIDNVCIESLSLDLNNDVLKKASKGANSLSKRIEEVKKTDSKKLQDEYEKLVSGLSAADI 298
Query: 833 ARETDVVLANPVLPDEILQ 851
++ PVL +++L+
Sbjct: 299 INNEQQMMETPVLSEDLLK 317
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/118 (56%), Positives = 82/118 (69%), Gaps = 2/118 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM ++KK LD G+ +LEMPSGTGKT SLLSL +AY
Sbjct: 1 MKFYIDDLPVLFPYPRIYPEQYAYMSDIKKTLDVGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL L Y K + + GL L+SRKNLC+H
Sbjct: 61 MHYP-EHRKIVYCSRTMSEIEKALIELHNLMTYRAKELGYVEDFRGLGLTSRKNLCLH 117
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 71/111 (63%), Gaps = 8/111 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GK DYG+MI AD+RF R KR++L
Sbjct: 636 ARL-EFLRDHYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMILADRRFGR--KRNQL 692
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
PKWIQ+ L D TNLST+ AV +K++LR MAQP +D GV++ L+QL
Sbjct: 693 PKWIQQALLDADTNLSTDMAVANAKQFLRTMAQPTNPKDQEGVSVWDLEQL 743
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D S++RNYG LL++ + + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 505 ISSRFEIRNDPSIVRNYGSLLIEFSKITPDGMVVFFPSYLYMESIISMWQTMGILDEVWK 564
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 565 YKLILVETPDAQETALALETYRTACSNGRGAILLSVA---RGKVSEGI 609
>gi|170087262|ref|XP_001874854.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650054|gb|EDR14295.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 759
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 280/423 (66%), Gaps = 50/423 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAG-ENIPVCDFYEKFDAVGREAPLAPGVYSITK 59
+SKE+ G++VD RC LT+++V ++ +A +++ +C ++E+ + + G++++
Sbjct: 126 ISKEKKGRVVDARCRDLTNAAVCEKGRADPDSVELCSWHEELGKLEPGNLIPQGIWTLAD 185
Query: 60 LKEMGRELGLCPYFLARQ--AIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAH 117
+ E GR+ G+CPYF R+ ++ A +++YS+HYLLDPK+A VSKE+++ ++VVFDEAH
Sbjct: 186 ILEYGRDKGVCPYFAVRRMASMAFADVIIYSFHYLLDPKVAEQVSKEMSKDAIVVFDEAH 245
Query: 118 NIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE--MKEADSAKLREEYARLVEGLRDA 175
NIDNVC++SLS+ + R ++ A ++ L ++E +K D+AKL++EYA+LVEGL++
Sbjct: 246 NIDNVCIESLSIDLTRPMLDSATRSVVKLGEKIEEQVIKITDAAKLQDEYAKLVEGLQEP 305
Query: 176 QSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPA 235
+ D + NP+LP+++L E VPGNIR AEHFV FLKRF+EYLKTR+RV VV E+P
Sbjct: 306 -GGEDGDAFMGNPLLPEDLLNEAVPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAETPL 364
Query: 236 TFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKP 295
+FL+ LKDI+ IER+P
Sbjct: 365 SFLQH-----------------------------------------LKDITY---IERRP 380
Query: 296 LRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNP 355
LRFCAERL SL+RTLE+ L +++SL + ATLVS+Y KGF +I+EPF TVPNP
Sbjct: 381 LRFCAERLQSLIRTLELNRLDEYASLQKVASFATLVSTYEKGFLLILEPFETDNATVPNP 440
Query: 356 VLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLL 415
+ +F CLD SLAIKPVF+RF +VVITSGTLSPLDMYPK+L F PV+ ++ MTL R L
Sbjct: 441 IFHFTCLDPSLAIKPVFERFSSVVITSGTLSPLDMYPKMLQFTPVVQETYPMTLTRNAFL 500
Query: 416 PMV 418
P+V
Sbjct: 501 PLV 503
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 140/201 (69%), Gaps = 6/201 (2%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAG-ENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
+SKE+ G++VD RC LT+++V ++ +A +++ +C ++E+ + + G++++
Sbjct: 126 ISKEKKGRVVDARCRDLTNAAVCEKGRADPDSVELCSWHEELGKLEPGNLIPQGIWTLAD 185
Query: 715 LKEMGRELGLCPYFLARQ--AIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAH 772
+ E GR+ G+CPYF R+ ++ A +++YS+HYLLDPK+A VSKE+++ ++VVFDEAH
Sbjct: 186 ILEYGRDKGVCPYFAVRRMASMAFADVIIYSFHYLLDPKVAEQVSKEMSKDAIVVFDEAH 245
Query: 773 NIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE--MKEADSAKLREEYARLVEGLRDA 830
NIDNVC++SLS+ + R ++ A ++ L ++E +K D+AKL++EYA+LVEGL++
Sbjct: 246 NIDNVCIESLSIDLTRPMLDSATRSVVKLGEKIEEQVIKITDAAKLQDEYAKLVEGLQEP 305
Query: 831 QSARETDVVLANPVLPDEILQ 851
+ D + NP+LP+++L
Sbjct: 306 -GGEDGDAFMGNPLLPEDLLN 325
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/126 (61%), Positives = 90/126 (71%), Gaps = 8/126 (6%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID+LP+ FPY+ IYPEQYAYM +LK+ LDA GHC+LEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFFIDNLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNE-------EINMTGLVLSSRKN 536
+P KL+YCSRTVPEIEK + EL RL Y I H E E + G+ L+SRKN
Sbjct: 61 QFYPTR-RKLVYCSRTVPEIEKALAELKRLMAYRISHAETPEEKEKERSFMGMGLTSRKN 119
Query: 537 LCIHSE 542
LCIH E
Sbjct: 120 LCIHPE 125
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 76/111 (68%), Gaps = 7/111 (6%)
Query: 821 ARLVEGLRDAQSARET-----DVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRDA RE+ D + +L+GKTD+G+MIFADKRFAR+DKR+KL
Sbjct: 644 ARL-EYLRDAYRIRESEFLGFDAMRNAAQCVGRVLRGKTDWGLMIFADKRFARADKRAKL 702
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
P+WI +Y+T+ +NLST+ A+ LSK ++R ++Q E+ GV+L SL+ L
Sbjct: 703 PRWINQYITETASNLSTDMALTLSKLFMRTISQN-PNENSTGVSLWSLEDL 752
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 72/109 (66%), Gaps = 5/109 (4%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +L++ + +VPDG+V FF SYLY+ES+VA+W D GI++ + K
Sbjct: 513 ISSRFEVRNDPAVVRNFGSILIEYSKIVPDGIVAFFPSYLYMESIVAAWNDMGILNEVWK 572
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENI 687
KL+F+ET DA + S++ E + D GR L S + R K E I
Sbjct: 573 NKLIFVETPDA-NETSIALENYRRACDNGRGAVLLSVA---RGKVSEGI 617
>gi|400593003|gb|EJP61017.1| DNA repair helicase RAD3 [Beauveria bassiana ARSEF 2860]
Length = 749
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/418 (45%), Positives = 267/418 (63%), Gaps = 47/418 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GEN+ +C +++ D + + GV++ +
Sbjct: 79 VKREKSGSVVDARCRSLTAGFVKEKKERGENVDLCVYHDNLDLLESHNLIPNGVWTFDGI 138
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
G E CPYF AR+ + + +V++SYHYLLDPKIA V+K+ ++ +VVFDEAHNID
Sbjct: 139 LRYGEEHKQCPYFTARRMMQYCNVVIFSYHYLLDPKIAERVTKDFSKDCIVVFDEAHNID 198
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I ++ +A Q L+ + +M+E D +L+ EY +LV+GLR+A AR+
Sbjct: 199 NVCIESLSTDITEDSLRRATRGAQNLKQKIADMRETDQEQLQNEYEKLVQGLREADEARQ 258
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANPVLP+E+L+E VPGNIR AEHFV FL+RFIEYLK V+ E+P +FL
Sbjct: 259 EDAFMANPVLPEELLREAVPGNIRRAEHFVSFLQRFIEYLKAG---APVISETPPSFLA- 314
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPL FCA
Sbjct: 315 ----------------------HLKEH------------TF---------IEKKPLGFCA 331
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EP+ VPNP+L+F
Sbjct: 332 ERLTSLVRTLELTNIDDYQPLQEVATFATLVATYDKGFLLILEPYESDTAEVPNPILHFT 391
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AI+PVFDRF +V+ITSGT+SPL+MYPK+L+F VI S+SMTLAR LPM+
Sbjct: 392 CLDAAIAIRPVFDRFYSVIITSGTISPLEMYPKMLDFSTVIQESYSMTLARRSFLPMI 449
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 132/197 (67%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GEN+ +C +++ D + + GV++
Sbjct: 78 SVKREKSGSVVDARCRSLTAGFVKEKKERGENVDLCVYHDNLDLLESHNLIPNGVWTFDG 137
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ G E CPYF AR+ + + +V++SYHYLLDPKIA V+K+ ++ +VVFDEAHNI
Sbjct: 138 ILRYGEEHKQCPYFTARRMMQYCNVVIFSYHYLLDPKIAERVTKDFSKDCIVVFDEAHNI 197
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I ++ +A Q L+ + +M+E D +L+ EY +LV+GLR+A AR
Sbjct: 198 DNVCIESLSTDITEDSLRRATRGAQNLKQKIADMRETDQEQLQNEYEKLVQGLREADEAR 257
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANPVLP+E+L+
Sbjct: 258 QEDAFMANPVLPEELLR 274
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ + F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 459 ISTSFQVRNEPSVVRNYGNLLTEFAKITPDGLVVFFPSYLYMESIISMWQGMGILDEVWK 518
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 519 YKLILVETPDAQET 532
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 465 MPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEE 523
MPSGTGKT SLLSLIVAY + P + KL+YCSRT+ EIEK + EL L Y + E
Sbjct: 1 MPSGTGKTVSLLSLIVAYQQSMP-EKRKLIYCSRTMSEIEKALMELEALMKYRTEQLGHE 59
Query: 524 INMTGLVLSSRKNLCIHSEFETRDDISVI 552
+ GL L+SRKNLC+H + SV+
Sbjct: 60 EDFRGLGLTSRKNLCLHPSVKREKSGSVV 88
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYGIM+ AD+RF + KR +LPKWI + L D NLST+ AV ++R+L+ MAQ
Sbjct: 622 VLRGKDDYGIMVLADRRFQK--KRPQLPKWINQGLMDVDVNLSTDMAVSSARRFLKTMAQ 679
Query: 909 PFTREDMLGVALLSLDQLLEK 929
PF ++ G++ + L K
Sbjct: 680 PFRAKEQEGISTWGYEDLERK 700
>gi|212531953|ref|XP_002146133.1| TFIIH complex helicase Rad3, putative [Talaromyces marneffei ATCC
18224]
gi|210071497|gb|EEA25586.1| TFIIH complex helicase Rad3, putative [Talaromyces marneffei ATCC
18224]
Length = 794
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/418 (44%), Positives = 269/418 (64%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+S V + + GE++ C +++ D + + PGV++ L
Sbjct: 120 VKREKSGAVVDARCRSLTASFVVQKKERGEDVETCTYHDNLDLLEPHNLIEPGVFTFGDL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+E CPYF R+ + + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNID
Sbjct: 180 LRYCQEKVTCPYFTVRRMLPYCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NV ++SLS+ + ++ KA + LE ++EMK +D+ KL+ EY +LVEGL+ + AR+
Sbjct: 240 NVAIESLSIDLTEDSLRKASRGAKNLERKIEEMKSSDAEKLQSEYTKLVEGLKATEEARD 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D++++NPVLP ++L E VPGNIR AEHF+ FL+RFI+YL TR++V + E+ +FL
Sbjct: 300 EDLIMSNPVLPQDLLSEAVPGNIRRAEHFIAFLQRFIQYLMTRMKVTHTISETTPSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+HL+ V IE KPLRFC+
Sbjct: 358 ---------------------QHLR---------------------ELVFIEAKPLRFCS 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ D+ L + ATLVS+Y +GF +I+EPF +A TVPNPVL+
Sbjct: 376 ERLTSLVRTLELMNIEDYQPLQEVAMFATLVSTYDRGFLLILEPFESEAATVPNPVLHLA 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++A +PV +RF ++V+TSGTL+PLDM+PK+LNF PV+ S++MTLAR LPM+
Sbjct: 436 CLDAAIAFRPVVERFSSIVVTSGTLTPLDMFPKMLNFTPVLQESYTMTLARRSFLPMI 493
Score = 186 bits (471), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 132/196 (67%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+S V + + GE++ C +++ D + + PGV++
Sbjct: 119 SVKREKSGAVVDARCRSLTASFVVQKKERGEDVETCTYHDNLDLLEPHNLIEPGVFTFGD 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L +E CPYF R+ + + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNI
Sbjct: 179 LLRYCQEKVTCPYFTVRRMLPYCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNV ++SLS+ + ++ KA + LE ++EMK +D+ KL+ EY +LVEGL+ + AR
Sbjct: 239 DNVAIESLSIDLTEDSLRKASRGAKNLERKIEEMKSSDAEKLQSEYTKLVEGLKATEEAR 298
Query: 835 ETDVVLANPVLPDEIL 850
+ D++++NPVLP ++L
Sbjct: 299 DEDLIMSNPVLPQDLL 314
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/144 (53%), Positives = 91/144 (63%), Gaps = 14/144 (9%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID+L V FPY IYPEQ+ YM +LKKALDA GHC+LEMPSGTGKT +LLSLIVAY
Sbjct: 1 MRFKIDELEVLFPYPKIYPEQWQYMCDLKKALDASGHCVLEMPSGTGKTVTLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY---YIKHNEEINMTGLVLSSRKNLCIH 540
H D KL+YCSRT+ EI+K + EL L Y + + E+ GL LSSRKNLC+H
Sbjct: 61 QHHG-DSRKLIYCSRTMSEIDKALHELKALMKYRASQLGYTEDFR--GLGLSSRKNLCLH 117
Query: 541 SEFETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 118 P--------SVKREKSGAVVDARC 133
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 71/114 (62%), Gaps = 8/114 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +++GK DYGIM+ ADKRFAR KRS+L
Sbjct: 634 ARL-EFLRENYGIRENDFLSFDAMRHASQCLGRVIRGKDDYGIMVLADKRFAR--KRSQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEK 929
PKWI + + ++ NLST+ AV +K +LR MAQPF +D G++ + QL E+
Sbjct: 691 PKWISQNILESEVNLSTDMAVATAKNFLRTMAQPFRAKDHEGISSWTPAQLEEQ 744
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+TR+D S +RN+G LL+D A +VPDG+V FF SYLY+ES + W GI+D +
Sbjct: 503 ISSSFQTRNDPSNLRNFGSLLLDFAKIVPDGIVVFFPSYLYMESTLHVWSGMGILDMIWN 562
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA +S + +GR L S + R K E +
Sbjct: 563 YKLILVETPDAQESSLALETYRTACCNGRGAILMSVA---RGKVAEGV 607
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISV---IRN 595
I S F+TR+D S +RN+G LL+D A +VPDG+V FF SYLY+ES + + I N
Sbjct: 503 ISSSFQTRNDPSNLRNFGSLLLDFAKIVPDGIVVFFPSYLYMESTLHVWSGMGILDMIWN 562
Query: 596 YGQLLVD 602
Y +LV+
Sbjct: 563 YKLILVE 569
>gi|448112560|ref|XP_004202128.1| Piso0_001608 [Millerozyma farinosa CBS 7064]
gi|359465117|emb|CCE88822.1| Piso0_001608 [Millerozyma farinosa CBS 7064]
Length = 795
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/429 (44%), Positives = 272/429 (63%), Gaps = 55/429 (12%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVR-----------DRHKAGENIPVCDFYEKFDAVGREAP 49
+SKE G +VD +C +T+ ++ D+ + E +C ++E+ + +
Sbjct: 120 ISKEPKGVVVDEKCRRITNGQLKQQIENGKVSEEDQKRHPETKQLCSYHEELYDMEQHNL 179
Query: 50 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 109
+ GVYS L + G CPYF R+ I + I++YSYHYLLDPKIA VSK+++R S
Sbjct: 180 IPAGVYSFDALINYCKARGTCPYFTVRRMIPYCNIIIYSYHYLLDPKIAERVSKDISRDS 239
Query: 110 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 169
+++FDEAHNIDNVC++SLS+ + T+++A L + +MK DS KL+ EY +LV
Sbjct: 240 IIIFDEAHNIDNVCIESLSLDLTDDTLQRATRGATKLGDAIDDMKSQDSEKLQNEYEKLV 299
Query: 170 EGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQV 229
EGLR ++ RE ++ ++NP+LP ++L E VPGNIR EHF+ FLKRFIEYLKTR++V V
Sbjct: 300 EGLRQSEIEREEELFMSNPILPKDLLDEAVPGNIRKGEHFISFLKRFIEYLKTRMKVLHV 359
Query: 230 VQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKV 289
+ E+P +FL +HLK TF
Sbjct: 360 ISETPTSFL-----------------------QHLKD------------LTF-------- 376
Query: 290 CIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKA 349
I+RKPLRFC+ERL+ L+RTLE+T + DF++L I ATLVS+Y GF +I+EPF +
Sbjct: 377 -IDRKPLRFCSERLSLLVRTLELTEIEDFTALKDIATFATLVSTYETGFQLILEPFETEG 435
Query: 350 PTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTL 409
+VPNP+L+F CLD+S+AIKPVFDRF +V+ITSGT+SPLDMYP++LNFQ VI S+++TL
Sbjct: 436 SSVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPRMLNFQTVIQESYTITL 495
Query: 410 ARPCLLPMV 418
AR LPM+
Sbjct: 496 ARRSFLPMI 504
Score = 169 bits (428), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 128/207 (61%), Gaps = 11/207 (5%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVR-----------DRHKAGENIPVCDFYEKFDAVGREA 703
S+SKE G +VD +C +T+ ++ D+ + E +C ++E+ + +
Sbjct: 119 SISKEPKGVVVDEKCRRITNGQLKQQIENGKVSEEDQKRHPETKQLCSYHEELYDMEQHN 178
Query: 704 PLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARS 763
+ GVYS L + G CPYF R+ I + I++YSYHYLLDPKIA VSK+++R
Sbjct: 179 LIPAGVYSFDALINYCKARGTCPYFTVRRMIPYCNIIIYSYHYLLDPKIAERVSKDISRD 238
Query: 764 SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARL 823
S+++FDEAHNIDNVC++SLS+ + T+++A L + +MK DS KL+ EY +L
Sbjct: 239 SIIIFDEAHNIDNVCIESLSLDLTDDTLQRATRGATKLGDAIDDMKSQDSEKLQNEYEKL 298
Query: 824 VEGLRDAQSARETDVVLANPVLPDEIL 850
VEGLR ++ RE ++ ++NP+LP ++L
Sbjct: 299 VEGLRQSEIEREEELFMSNPILPKDLL 325
Score = 129 bits (324), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/120 (55%), Positives = 84/120 (70%), Gaps = 6/120 (5%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLP+ FPY IYPEQY+YM ++K+ LD G+C+LEMPSGTGKT SLLS+ VAY
Sbjct: 1 MKFYIDDLPILFPYPKIYPEQYSYMCDIKRTLDVGGNCILEMPSGTGKTISLLSITVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY---YIKHNEEINMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL L Y + + EE GL L+SRKNLC+H
Sbjct: 61 MHYP-EHRKVVYCSRTMSEIEKALIELHNLMKYRAEQLGYVEEFR--GLGLTSRKNLCLH 117
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 76/118 (64%), Gaps = 8/118 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GK DYGIM+ AD+RF+R K+S+L
Sbjct: 645 ARL-EFLRDHFQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFSR--KKSQL 701
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHAR 933
PKWI + L D+ TNLST+ A+ +K++LR +AQP +D GV++ + +QLL+ + +
Sbjct: 702 PKWIAQALLDSDTNLSTDMALANAKKFLRSLAQPTNPKDQEGVSVWNYEQLLKHQQEQ 759
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D SV+RNYG LL++ + + PDG+V FF SYLY+ES+++ W + G++D + K
Sbjct: 514 ISSRFEIRNDPSVVRNYGSLLIEFSKITPDGMVVFFPSYLYMESIISMWQNMGVLDEVWK 573
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 574 YKLILVETPDAQETSLALETFRKACSNGRGAVLLSVA---RGKVSEGI 618
>gi|388580610|gb|EIM20923.1| DNA repair helicase [Wallemia sebi CBS 633.66]
Length = 776
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/432 (43%), Positives = 277/432 (64%), Gaps = 59/432 (13%)
Query: 1 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
+S+ER GK VD RC LTS+ + R G + +C ++E V + PG+++I
Sbjct: 81 ISQERRGKAVDARCRDLTSAHAVQKGRSDPGSH-ELCSYHEGLSEVAPGEIVPPGIWTIE 139
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+K+ G++ G CPYF R+ + ++YS+HYLLDPK+A +VS+E+++ ++VVFDEAHN
Sbjct: 140 DVKKFGQQKGYCPYFSVRRMVPFCNTIIYSFHYLLDPKVAEMVSREMSKDAIVVFDEAHN 199
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + R +E A ++ L + E+KE D+ +L++EYA+LVEG++DA
Sbjct: 200 IDNVCIESLSIDLTRPMLESASRSVDKLSEKIAEVKENDAQRLQDEYAKLVEGMQDADQP 259
Query: 179 ------------RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRV 226
R+ + VL+NPVLP ++L+E +PGNIR AEHFV FLKRF+EYLKTR+RV
Sbjct: 260 PPAANDEMAMIRRQDEDVLSNPVLPADLLKEAIPGNIRKAEHFVSFLKRFVEYLKTRMRV 319
Query: 227 QQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDIS 286
VV E+P +FL+ L+DI+
Sbjct: 320 LHVVAETPLSFLQ-----------------------------------------HLRDIT 338
Query: 287 SKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFS 346
IERKPLRFC++RL++L++TLE+ L ++S+L + ATLVS+Y KGF +I+EPF
Sbjct: 339 ---YIERKPLRFCSDRLSNLIKTLELERLDEYSALQSVAAFATLVSTYEKGFLLILEPFE 395
Query: 347 DKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFS 406
+ T+PNP+ + C D+S+AI PVF+RF +V+ITSGT+SPLDMYPK+LNF ++ S+
Sbjct: 396 SETATIPNPIFHLTCQDASIAIAPVFERFSSVIITSGTISPLDMYPKMLNFNAIVQESYP 455
Query: 407 MTLARPCLLPMV 418
MTL+R C +PMV
Sbjct: 456 MTLSRNCFIPMV 467
Score = 176 bits (446), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 136/211 (64%), Gaps = 15/211 (7%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSI 712
S+S+ER GK VD RC LTS+ + R G + +C ++E V + PG+++I
Sbjct: 80 SISQERRGKAVDARCRDLTSAHAVQKGRSDPGSH-ELCSYHEGLSEVAPGEIVPPGIWTI 138
Query: 713 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAH 772
+K+ G++ G CPYF R+ + ++YS+HYLLDPK+A +VS+E+++ ++VVFDEAH
Sbjct: 139 EDVKKFGQQKGYCPYFSVRRMVPFCNTIIYSFHYLLDPKVAEMVSREMSKDAIVVFDEAH 198
Query: 773 NIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS 832
NIDNVC++SLS+ + R +E A ++ L + E+KE D+ +L++EYA+LVEG++DA
Sbjct: 199 NIDNVCIESLSIDLTRPMLESASRSVDKLSEKIAEVKENDAQRLQDEYAKLVEGMQDADQ 258
Query: 833 A------------RETDVVLANPVLPDEILQ 851
R+ + VL+NPVLP ++L+
Sbjct: 259 PPPAANDEMAMIRRQDEDVLSNPVLPADLLK 289
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 84/122 (68%), Gaps = 7/122 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE+D + + + +L+GK+DYG+MIFADKRFARSDKR+KL
Sbjct: 608 ARL-EYLRDNHRIRESDFLTFDAMRHAAQCVGRVLRGKSDYGLMIFADKRFARSDKRAKL 666
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
P+WI +Y+++ +NLST+ A+ L+KR++R MAQPF GV+L ++D +LE++ E
Sbjct: 667 PRWINQYISETSSNLSTDMAISLAKRFVRTMAQPFDHSQT-GVSLWTMDHVLERQRLDKE 725
Query: 936 EE 937
+
Sbjct: 726 SD 727
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 83/134 (61%), Gaps = 9/134 (6%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C +P V+ + + + S FE R+D +V+RNYGQ+L++ + V+PDG+V FF SYLY+ES
Sbjct: 462 CFIP-MVITRGSDQVAVSSRFEVRNDPAVVRNYGQMLIEYSKVIPDGIVAFFPSYLYMES 520
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHK 682
+V++W + I+D + K KL+F+ET DA ++ S++ E K D GR + S + R K
Sbjct: 521 IVSAWNEMQILDEVWKHKLIFVETPDAPET-SIALENFRKACDNGRGAVMLSVA---RGK 576
Query: 683 AGENIPVCDFYEKF 696
E I DF F
Sbjct: 577 VSEGI---DFDHHF 587
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 53/79 (67%), Gaps = 4/79 (5%)
Query: 465 MPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN--- 521
MPSGTGKT SLLSLIVAY + D KL+YCSRTVPEIEK + EL RL Y
Sbjct: 1 MPSGTGKTVSLLSLIVAYQQHYDAD-RKLVYCSRTVPEIEKALAELKRLMAYRADQGYAA 59
Query: 522 EEINMTGLVLSSRKNLCIH 540
++ GL LSSRKNLC+H
Sbjct: 60 KDSGYIGLGLSSRKNLCLH 78
>gi|346976950|gb|EGY20402.1| DNA repair helicase RAD3 [Verticillium dahliae VdLs.17]
Length = 772
Score = 384 bits (987), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/407 (47%), Positives = 261/407 (64%), Gaps = 47/407 (11%)
Query: 12 GRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCP 71
G+ LT+ V+++ GEN+ VC +++ D + + GV++ L G + CP
Sbjct: 116 GQEEDLTAGFVKEKKDKGENVDVCVYHDNLDLLEPHNLIPNGVWTFDGLLRYGEQHKQCP 175
Query: 72 YFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
YF +R+ + + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNIDNVC++SLS I
Sbjct: 176 YFTSRRMMQYCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNIDNVCIESLSTDI 235
Query: 132 NRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLP 191
++ KA Q L+ + EMK+ D +L+ EY +LVEGLRDA AR+ D +AN P
Sbjct: 236 TEDSLRKAARGAQNLDRKIAEMKQTDQEQLQNEYLKLVEGLRDAGEARQEDAFMAN---P 292
Query: 192 DEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMIS 251
D++L E VPGNIR AEHFV FLKRFIEYLKTR++V+ + E+P +FL
Sbjct: 293 DDLLNEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVRNTISETPPSFLA------------ 340
Query: 252 EAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLE 311
HLK TF IE+KPL+FCAERL SL+RTLE
Sbjct: 341 -----------HLKE------------FTF---------IEKKPLKFCAERLTSLVRTLE 368
Query: 312 ITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPV 371
+TN+ D+ L + ATLV++Y KGF +I+EPF +A VPNPVL+F CLD+++AIKPV
Sbjct: 369 LTNIEDYQPLQEVATFATLVATYEKGFLLILEPFESEAAEVPNPVLHFTCLDAAIAIKPV 428
Query: 372 FDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
FDRF +V+ITSGT+SPL+MYPK+L F V+ S+SMTLAR LPM+
Sbjct: 429 FDRFSSVIITSGTISPLEMYPKMLGFSTVVQESYSMTLARRSFLPMI 475
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 131/212 (61%), Gaps = 8/212 (3%)
Query: 638 QKRKLLFI-----ETQDAL-DSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCD 691
+ RKL++ E + AL + R + K R ++ G+ LT+ V+++ GEN+ VC
Sbjct: 83 EHRKLIYCSRTMSEIEKALAELRELMKYRTEQL--GQEEDLTAGFVKEKKDKGENVDVCV 140
Query: 692 FYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPK 751
+++ D + + GV++ L G + CPYF +R+ + + +++YSYHYLLDPK
Sbjct: 141 YHDNLDLLEPHNLIPNGVWTFDGLLRYGEQHKQCPYFTSRRMMQYCNVIIYSYHYLLDPK 200
Query: 752 IANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEA 811
IA VS+EL++ +VVFDEAHNIDNVC++SLS I ++ KA Q L+ + EMK+
Sbjct: 201 IAERVSRELSKDCIVVFDEAHNIDNVCIESLSTDITEDSLRKAARGAQNLDRKIAEMKQT 260
Query: 812 DSAKLREEYARLVEGLRDAQSARETDVVLANP 843
D +L+ EY +LVEGLRDA AR+ D +ANP
Sbjct: 261 DQEQLQNEYLKLVEGLRDAGEARQEDAFMANP 292
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 97/175 (55%), Gaps = 39/175 (22%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELK------------------KALDAKGHCLLEM 465
M IDDLPV FPY IYPEQYAYM +LK + LDA GHC+LEM
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKSRSSMAETSPCQYADTALETLDAGGHCVLEM 60
Query: 466 PSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEI 524
PSGTGKT SLLSLIVAY +P + KL+YCSRT+ EIEK + EL L Y + +E
Sbjct: 61 PSGTGKTVSLLSLIVAYQQHYP-EHRKLIYCSRTMSEIEKALAELRELMKYRTEQLGQEE 119
Query: 525 NMTGLVLSSRK------NLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCF 573
++T + +K ++C++ D++ ++ + ++P+GV F
Sbjct: 120 DLTAGFVKEKKDKGENVDVCVY-----HDNLDLLEPHN--------LIPNGVWTF 161
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 70/112 (62%), Gaps = 8/112 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR +L
Sbjct: 616 ARL-EFLRETYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFQK--KRVQL 672
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLL 927
PKWI + L D TNLST+ AV ++R+L+QMAQPF +D GV+ S + L+
Sbjct: 673 PKWINQGLLDADTNLSTDMAVSSARRFLKQMAQPFRAKDQEGVSTWSYEDLM 724
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 51/70 (72%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W GI+D + K KL+
Sbjct: 489 FQVRNEPSVVRNYGSLLTEFAKITPDGMVVFFPSYLYMESIISMWQGMGILDEVWKYKLI 548
Query: 644 FIETQDALDS 653
+ET DA ++
Sbjct: 549 LVETPDAQET 558
>gi|119577746|gb|EAW57342.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 (xeroderma pigmentosum D),
isoform CRA_b [Homo sapiens]
Length = 429
Score = 384 bits (987), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/339 (56%), Positives = 239/339 (70%), Gaps = 44/339 (12%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FDA GRE PL G+Y++ L
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARE
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 358 -----------------------------------------LSGLAQRVCIQRKPLRFCA 376
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFA 339
ERL SLL TLEIT+L DFS L ++ + ATLVS+Y KG A
Sbjct: 377 ERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGQA 415
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 170/229 (74%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 88 RKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 147
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FDA GRE PL G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 148 HDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVY 207
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ GN++TL+
Sbjct: 208 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQ 267
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 268 KTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 316
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
>gi|30584019|gb|AAP36258.1| Homo sapiens excision repair cross-complementing rodent repair
deficiency, complementation group 2 (xeroderma
pigmentosum D) [synthetic construct]
Length = 406
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/339 (56%), Positives = 239/339 (70%), Gaps = 44/339 (12%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FDA GRE PL G+Y++ L
Sbjct: 97 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 156
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 157 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 216
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARE
Sbjct: 217 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 276
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 277 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 333
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 334 -----------------------------------------LSGLAQRVCIQRKPLRFCA 352
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFA 339
ERL SLL TLEIT+L DFS L ++ + ATLVS+Y KG A
Sbjct: 353 ERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGQA 391
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 170/229 (74%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 64 RKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 123
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FDA GRE PL G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 124 HDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVY 183
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ GN++TL+
Sbjct: 184 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQ 243
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 244 KTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 292
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/96 (68%), Positives = 79/96 (82%), Gaps = 1/96 (1%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY A+PL+VTKL+YCSRTVPEIEKV+
Sbjct: 1 MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 60
Query: 508 EELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 61 EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 96
>gi|195947407|ref|NP_001124339.1| TFIIH basal transcription factor complex helicase XPD subunit
isoform 2 [Homo sapiens]
gi|30582605|gb|AAP35529.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 (xeroderma pigmentosum D) [Homo
sapiens]
Length = 405
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/339 (56%), Positives = 239/339 (70%), Gaps = 44/339 (12%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FDA GRE PL G+Y++ L
Sbjct: 97 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 156
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 157 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 216
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ GN++TL+ T+ +KE D +LR+EY RLVEGLR+A +ARE
Sbjct: 217 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 276
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
TD LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP F
Sbjct: 277 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF--- 333
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L ++ +VCI+RKPLRFCA
Sbjct: 334 -----------------------------------------LSGLAQRVCIQRKPLRFCA 352
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFA 339
ERL SLL TLEIT+L DFS L ++ + ATLVS+Y KG A
Sbjct: 353 ERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGQA 391
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 170/229 (74%), Gaps = 17/229 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 64 RKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 123
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FDA GRE PL G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 124 HDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVY 183
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ GN++TL+
Sbjct: 184 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQ 243
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
T+ +KE D +LR+EY RLVEGLR+A +ARETD LANPVLPDE+LQ
Sbjct: 244 KTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 292
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/96 (68%), Positives = 79/96 (82%), Gaps = 1/96 (1%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY A+PL+VTKL+YCSRTVPEIEKV+
Sbjct: 1 MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 60
Query: 508 EELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 61 EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 96
>gi|358338885|dbj|GAA57512.1| DNA excision repair protein ERCC-2, partial [Clonorchis sinensis]
Length = 731
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/405 (47%), Positives = 261/405 (64%), Gaps = 83/405 (20%)
Query: 14 CHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYF 73
C LT+S VR +H + + P C FYE
Sbjct: 100 CFRLTASFVRKKHASDASTPSCKFYE---------------------------------- 125
Query: 74 LARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINR 133
I+HA I+VYSY YLLDPKIAN+VS++L ++SV+VFDEAHNIDNVC++S+S + R
Sbjct: 126 -----IMHANIIVYSYFYLLDPKIANLVSRDLPKNSVIVFDEAHNIDNVCIESMSCVLTR 180
Query: 134 RTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDE 193
R++EKA ++ L +K++K+ ++ +L+EEY RLVEGLR AQ A+ETD VLANP+LPDE
Sbjct: 181 RSLEKATTSLNRLTDRVKDVKQHNAERLKEEYRRLVEGLRQAQVAKETDQVLANPILPDE 240
Query: 194 ILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEA 253
IL+E VPG++R+A+ F+ FL+RF+EY+
Sbjct: 241 ILREAVPGSLRSADSFLAFLRRFLEYV--------------------------------- 267
Query: 254 YRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEIT 313
K RLR+ VV E+P FL+D KVC++R+PL+FCAERL SLL TLE+
Sbjct: 268 -----------KLRLRIAHVVHETPVAFLRDCLEKVCVDRRPLQFCAERLRSLLNTLELA 316
Query: 314 NLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFD 373
+ +FSSL ++ + ATLV++YT+GF +I+EPF +++PTV NPVLYF C+D+SL I+PVF
Sbjct: 317 DYAEFSSLTLLCNFATLVATYTRGFCLIIEPFDERSPTVINPVLYFYCMDASLPIRPVFS 376
Query: 374 RFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
RF +V+ITSGTLSPLDMYP+IL+F PV SF+MTLAR C+LPM+
Sbjct: 377 RFASVIITSGTLSPLDMYPRILDFHPVNSASFTMTLARSCVLPMI 421
Score = 165 bits (418), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 128/215 (59%), Gaps = 46/215 (21%)
Query: 637 LQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKF 696
L RK L IE R V + DG VD C LT+S VR +H + + P C FYE
Sbjct: 75 LSSRKNLCIE-------RDVRRAGDGAAVDAACFRLTASFVRKKHASDASTPSCKFYE-- 125
Query: 697 DAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVV 756
I+HA I+VYSY YLLDPKIAN+V
Sbjct: 126 -------------------------------------IMHANIIVYSYFYLLDPKIANLV 148
Query: 757 SKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKL 816
S++L ++SV+VFDEAHNIDNVC++S+S + RR++EKA ++ L +K++K+ ++ +L
Sbjct: 149 SRDLPKNSVIVFDEAHNIDNVCIESMSCVLTRRSLEKATTSLNRLTDRVKDVKQHNAERL 208
Query: 817 REEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
+EEY RLVEGLR AQ A+ETD VLANP+LPDEIL+
Sbjct: 209 KEEYRRLVEGLRQAQVAKETDQVLANPILPDEILR 243
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 62/77 (80%)
Query: 850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQP 909
++GK+DYG+MI ADKR+AR+DKRSKLP WIQ L D NLSTEEAVQ S+R+LR M QP
Sbjct: 595 IRGKSDYGVMILADKRYARADKRSKLPGWIQSQLQDAFVNLSTEEAVQASRRFLRLMGQP 654
Query: 910 FTREDMLGVALLSLDQL 926
F +ED LG+ALL+ + +
Sbjct: 655 FNKEDQLGLALLTREHV 671
Score = 105 bits (263), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/83 (65%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 459 GHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYI 518
GH +LEMPSGTGKT SLLSLIVAYM A P + K +YCSRTVPEIEKVVEEL L YY
Sbjct: 1 GHGVLEMPSGTGKTVSLLSLIVAYMKARPGAIEKFIYCSRTVPEIEKVVEELKVLHKYYA 60
Query: 519 KHNEE--INMTGLVLSSRKNLCI 539
E + + LSSRKNLCI
Sbjct: 61 AETNEDGCGLLAIALSSRKNLCI 83
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 65/88 (73%), Gaps = 1/88 (1%)
Query: 563 ACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLE 622
+CV+P +V + + + FE+R+D++V+RNYG LL +A VVPDG+V FF SY YLE
Sbjct: 415 SCVLP-MIVSKGNDQVPMTTKFESREDMAVVRNYGHLLAQLASVVPDGIVAFFPSYHYLE 473
Query: 623 SVVASWYDQGIIDNLQKRKLLFIETQDA 650
S A+WY+Q +I+ +Q+ KLLF+ETQDA
Sbjct: 474 STFATWYEQHLIEQIQRHKLLFVETQDA 501
>gi|449462346|ref|XP_004148902.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair helicase UVH6-like
[Cucumis sativus]
Length = 919
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/417 (45%), Positives = 262/417 (62%), Gaps = 46/417 (11%)
Query: 2 SKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLK 61
S+ RD VD C LT+S VR ++P C+F+E+++ G A L PGVY++ L+
Sbjct: 285 SESRDS--VDAGCRKLTASWVRAMAAENPDVPTCEFFEQYEKAGSSAVLPPGVYTLQDLR 342
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121
G + G CPYFLAR + A +VVYSY YLLDPK+A+++SKE+ R SVVVFDEAHNIDN
Sbjct: 343 AFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNIDN 402
Query: 122 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARET 181
VC+++LSV + R+TIE A N+ + ++ KE D+ +LR EY RLVEGL + +
Sbjct: 403 VCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPIS 462
Query: 182 DVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDI 241
D L+NP LPD+IL+E VPGNIR AEHF+ L+R ++Y
Sbjct: 463 DTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQY---------------------- 500
Query: 242 SSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAE 301
L+ RL + V +E TF+ I S+ I++K L+FC +
Sbjct: 501 ----------------------LEGRLDTENVEKEGLVTFVGSIGSQAGIDQKTLKFCYD 538
Query: 302 RLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCC 361
RL SL+ TLEIT+ +F + I ATLV +Y +GF+II+EP ++ P +P+PVL C
Sbjct: 539 RLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEPVDERMPHIPDPVLQLSC 598
Query: 362 LDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
D+SLAIKPVF+RFQ+VVITSGTLSP+D+YP++LNF PV+ SF+M+L R C+ PMV
Sbjct: 599 HDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRSFTMSLTRDCICPMV 655
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 95/195 (48%), Positives = 131/195 (67%), Gaps = 2/195 (1%)
Query: 657 SKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLK 716
S+ RD VD C LT+S VR ++P C+F+E+++ G A L PGVY++ L+
Sbjct: 285 SESRDS--VDAGCRKLTASWVRAMAAENPDVPTCEFFEQYEKAGSSAVLPPGVYTLQDLR 342
Query: 717 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 776
G + G CPYFLAR + A +VVYSY YLLDPK+A+++SKE+ R SVVVFDEAHNIDN
Sbjct: 343 AFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNIDN 402
Query: 777 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARET 836
VC+++LSV + R+TIE A N+ + ++ KE D+ +LR EY RLVEGL + +
Sbjct: 403 VCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPIS 462
Query: 837 DVVLANPVLPDEILQ 851
D L+NP LPD+IL+
Sbjct: 463 DTWLSNPALPDDILK 477
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 7/157 (4%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
I ++ F ++ I+P++Y Y++++ KALDAKGHCLLEMP+GTGKT +LLSLI +Y + P
Sbjct: 166 IXNITKLFXFDIIFPQRYHYLIQINKALDAKGHCLLEMPTGTGKTIALLSLITSYALSKP 225
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSEF--- 543
+ KL+YC+RTV E+EK + EL L DY ++ + + LSSRKNLC++
Sbjct: 226 QNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPNVLAS 285
Query: 544 ETRD--DISVIRNYGQLLVDIACVVPDGVVC-FFTSY 577
E+RD D + + +A PD C FF Y
Sbjct: 286 ESRDSVDAGCRKLTASWVRAMAAENPDVPTCEFFEQY 322
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ + L + + F+ R D+ V+RNYG+LL+++ VPDG+VCFF SY Y++
Sbjct: 650 CICP-MVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFVSYSYMDG 708
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
++ SW + GI+ + + KL+FIETQD +++
Sbjct: 709 IINSWNETGILKEIMQHKLVFIETQDVVET 738
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 56/81 (69%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+MIFADKR++R DKRSKLP WI +L D NLST+ A+ +++ +LR+MAQ
Sbjct: 828 VIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREFLRKMAQ 887
Query: 909 PFTREDMLGVALLSLDQLLEK 929
P+ + G L + LEK
Sbjct: 888 PYDKAGSSGRKTLLSQEDLEK 908
>gi|448537080|ref|XP_003871257.1| Rad3 protein [Candida orthopsilosis Co 90-125]
gi|380355614|emb|CCG25132.1| Rad3 protein [Candida orthopsilosis]
Length = 792
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 208/516 (40%), Positives = 299/516 (57%), Gaps = 87/516 (16%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAG-----------ENIPVCDFYEKFDAVGREAP 49
+S+E+ G +VD C +T+ ++++ + G +C ++EK +
Sbjct: 120 ISREKKGNVVDEMCRRVTNGQLKEKIEKGVVTEEDQVRDPAKYSLCSYHEKLYDLDPHEL 179
Query: 50 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 109
+ GVYS L +E+G CPYF R+ I I++YSYHYLLDPKIA+ VS+EL++ S
Sbjct: 180 VPSGVYSFDALIRYCKEMGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIADRVSRELSKDS 239
Query: 110 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 169
+++FDEAHNIDNVC++SLS+ + +++A L +++MK DS KL+ EY +LV
Sbjct: 240 IIIFDEAHNIDNVCIESLSLDLTEDVLKRATRGANKLAEAVEDMKAKDSEKLQNEYEQLV 299
Query: 170 EGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQV 229
+GLR A+ RE ++ ++NP+LP ++L E +PGNIR EHF+ FLKRFIEYLKTR++V V
Sbjct: 300 DGLRQAEVEREQEMFMSNPILPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHV 359
Query: 230 VQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKV 289
+ E+P +FL +HLK
Sbjct: 360 ISETPTSFL-----------------------QHLK---------------------ELT 375
Query: 290 CIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKA 349
I++KPL+FC+ERL+ L++TLE+T + DF++L I ATLVS+Y GF +I+EPF +
Sbjct: 376 YIDKKPLKFCSERLSLLVKTLELTEIEDFNALKDIATFATLVSTYDTGFQLILEPFETEG 435
Query: 350 PTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTL 409
TVPNP+L+F CLD+S+AIKPVF+RF +V+ITSGT+SPLDMYPK+LNFQ VI S++MTL
Sbjct: 436 STVPNPMLHFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPKMLNFQTVIQESYAMTL 495
Query: 410 ARPCLLPM----------------------VRENYAMGLMI-------DDLPVFFPYEYI 440
AR LPM V NY L+I D + VFFP Y+
Sbjct: 496 ARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYG-SLLIEFAKITPDGMVVFFP-SYL 553
Query: 441 YPEQYAYMVELKKALD-AKGHCLLEMPSGTGKTTSL 475
Y E M + LD H L+ + + + TSL
Sbjct: 554 YMESIISMWQTMGVLDEVWKHKLILVETPDAQETSL 589
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 128/206 (62%), Gaps = 11/206 (5%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAG-----------ENIPVCDFYEKFDAVGREAP 704
+S+E+ G +VD C +T+ ++++ + G +C ++EK +
Sbjct: 120 ISREKKGNVVDEMCRRVTNGQLKEKIEKGVVTEEDQVRDPAKYSLCSYHEKLYDLDPHEL 179
Query: 705 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 764
+ GVYS L +E+G CPYF R+ I I++YSYHYLLDPKIA+ VS+EL++ S
Sbjct: 180 VPSGVYSFDALIRYCKEMGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIADRVSRELSKDS 239
Query: 765 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 824
+++FDEAHNIDNVC++SLS+ + +++A L +++MK DS KL+ EY +LV
Sbjct: 240 IIIFDEAHNIDNVCIESLSLDLTEDVLKRATRGANKLAEAVEDMKAKDSEKLQNEYEQLV 299
Query: 825 EGLRDAQSARETDVVLANPVLPDEIL 850
+GLR A+ RE ++ ++NP+LP ++L
Sbjct: 300 DGLRQAEVEREQEMFMSNPILPQDLL 325
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/118 (55%), Positives = 84/118 (71%), Gaps = 2/118 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM ++KK LD G+C+LEMPSGTGKT SLLSL VAY
Sbjct: 1 MKFYIDDLPVLFPYPRIYPEQYAYMSDIKKTLDVGGNCILEMPSGTGKTISLLSLTVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL +L ++ + + GL L+SRKNLC++
Sbjct: 61 MHYP-EHRKIVYCSRTMSEIEKALIELHKLMEFRASELGYVEDFRGLGLTSRKNLCLN 117
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D SV+RNYG LL++ A + PDG+V FF SYLY+ES+++ W G++D + K
Sbjct: 514 ISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLYMESIISMWQTMGVLDEVWK 573
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 574 HKLILVETPDAQETSLALETYRKACSNGRGAVLLSVA---RGKVSEGI 618
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%), Gaps = 2/78 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYGIM+ AD+RFAR K+++LPKWI + L D+ TNLST+ A+ +K++LR +AQ
Sbjct: 677 VLRGKDDYGIMVLADRRFAR--KKAQLPKWIAQALNDSDTNLSTDMALATAKKFLRSLAQ 734
Query: 909 PFTREDMLGVALLSLDQL 926
P +D GV++ +DQL
Sbjct: 735 PTNPKDQEGVSVWDIDQL 752
>gi|242774370|ref|XP_002478428.1| TFIIH complex helicase Rad3, putative [Talaromyces stipitatus ATCC
10500]
gi|218722047|gb|EED21465.1| TFIIH complex helicase Rad3, putative [Talaromyces stipitatus ATCC
10500]
Length = 795
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/418 (43%), Positives = 270/418 (64%), Gaps = 44/418 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+S V + + GE++ C +++ D + + PGV++ + L
Sbjct: 120 VKREKSGTVVDARCRSLTASFVAQKKERGEDVETCTYHDNLDLLEPHNLIEPGVFTFSDL 179
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+E CPYF R+ + + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNID
Sbjct: 180 LRYCQEKVTCPYFTVRRMLPYCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NV ++SLS+ + ++ KA + LE ++EMK +D+ KL+ EY +LVEGL+ + AR+
Sbjct: 240 NVAIESLSIDLTEDSLRKASRGAKNLERKIEEMKTSDAEKLQSEYTKLVEGLKATEEARD 299
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D++++NPVLP ++L E VPGNIR AEHF+ FL+RFI+YL TR++V + E+ +FL
Sbjct: 300 EDLIMSNPVLPQDLLSEAVPGNIRRAEHFIAFLQRFIQYLMTRMKVTHTISETTPSFL-- 357
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+HL+ V IE KPL+FC+
Sbjct: 358 ---------------------QHLR---------------------ELVFIEAKPLKFCS 375
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ D+ L + ATLVS+Y +GF +I+EPF +A TVPNPVL+
Sbjct: 376 ERLTSLVRTLELMNIEDYQPLQEVAMFATLVSTYDRGFLLILEPFESEAATVPNPVLHLA 435
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++A +PV +RF ++V+TSGTL+PLDM+PK+LNF PV+ S++MTLAR LPM+
Sbjct: 436 CLDAAIAFRPVCERFSSIVVTSGTLTPLDMFPKMLNFTPVLQESYTMTLARRSFLPMI 493
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 133/196 (67%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+S V + + GE++ C +++ D + + PGV++ +
Sbjct: 119 SVKREKSGTVVDARCRSLTASFVAQKKERGEDVETCTYHDNLDLLEPHNLIEPGVFTFSD 178
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L +E CPYF R+ + + +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNI
Sbjct: 179 LLRYCQEKVTCPYFTVRRMLPYCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNI 238
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNV ++SLS+ + ++ KA + LE ++EMK +D+ KL+ EY +LVEGL+ + AR
Sbjct: 239 DNVAIESLSIDLTEDSLRKASRGAKNLERKIEEMKTSDAEKLQSEYTKLVEGLKATEEAR 298
Query: 835 ETDVVLANPVLPDEIL 850
+ D++++NPVLP ++L
Sbjct: 299 DEDLIMSNPVLPQDLL 314
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 77/144 (53%), Positives = 91/144 (63%), Gaps = 14/144 (9%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID++ V FPY IYPEQ+ YM +LKKALDA GHC+LEMPSGTGKT +LLSLIVAY
Sbjct: 1 MRFKIDEIEVLFPYPKIYPEQWQYMCDLKKALDAGGHCVLEMPSGTGKTVTLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYY---IKHNEEINMTGLVLSSRKNLCIH 540
H D KL+YCSRT+ EI+K + EL L Y + H E+ GL LSSRKNLC+H
Sbjct: 61 QHHG-DSRKLIYCSRTMSEIDKALHELKALMKYRALELGHTEDFR--GLGLSSRKNLCLH 117
Query: 541 SEFETRDDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 118 P--------SVKREKSGTVVDARC 133
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 8/123 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +++GK DYGIM+ ADKRFAR KR++L
Sbjct: 634 ARL-EFLRENYGIRENDFLSFDAMRHASQCLGRVIRGKDDYGIMVLADKRFAR--KRNQL 690
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + ++ NLST+ AV +K +LR MAQPF +D G++ + QL E+ R
Sbjct: 691 PKWINQTILESEVNLSTDMAVATAKNFLRTMAQPFKAKDHEGISSWTPAQLDEQIAKRKM 750
Query: 936 EEE 938
EEE
Sbjct: 751 EEE 753
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+TR+D S +RNYG LL+D A +VPDG+V FF SYLY+ES + W GI+D +
Sbjct: 503 ISSSFQTRNDPSNLRNYGTLLLDFAKIVPDGIVVFFPSYLYMESTLHVWSGMGILDMIWN 562
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA +S + +GR L S + R K E +
Sbjct: 563 YKLILVETPDAQESSLALETYRTACCNGRGAILMSVA---RGKVAEGV 607
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISV---IRN 595
I S F+TR+D S +RNYG LL+D A +VPDG+V FF SYLY+ES + + I N
Sbjct: 503 ISSSFQTRNDPSNLRNYGTLLLDFAKIVPDGIVVFFPSYLYMESTLHVWSGMGILDMIWN 562
Query: 596 YGQLLVD 602
Y +LV+
Sbjct: 563 YKLILVE 569
>gi|449491590|ref|XP_004158946.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair helicase UVH6-like
[Cucumis sativus]
Length = 598
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/417 (45%), Positives = 262/417 (62%), Gaps = 46/417 (11%)
Query: 2 SKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLK 61
S+ RD VD C LT+S VR ++P C+F+E+++ G A L PGVY++ L+
Sbjct: 124 SESRDS--VDAGCRKLTASWVRAMAAENPDVPTCEFFEQYEKAGSSAVLPPGVYTLQDLR 181
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121
G + G CPYFLAR + A +VVYSY YLLDPK+A+++SKE+ R SVVVFDEAHNIDN
Sbjct: 182 AFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNIDN 241
Query: 122 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARET 181
VC+++LSV + R+TIE A N+ + ++ KE D+ +LR EY RLVEGL + +
Sbjct: 242 VCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPIS 301
Query: 182 DVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDI 241
D L+NP LPD+IL+E VPGNIR AEHF+ L+R ++Y
Sbjct: 302 DTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQY---------------------- 339
Query: 242 SSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAE 301
L+ RL + V +E TF+ I S+ I++K L+FC +
Sbjct: 340 ----------------------LEGRLDTENVEKEGLVTFVGSIGSQAGIDQKTLKFCYD 377
Query: 302 RLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCC 361
RL SL+ TLEIT+ +F + I ATLV +Y +GF+II+EP ++ P +P+PVL C
Sbjct: 378 RLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEPVDERMPHIPDPVLQLSC 437
Query: 362 LDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
D+SLAIKPVF+RFQ+VVITSGTLSP+D+YP++LNF PV+ SF+M+L R C+ PMV
Sbjct: 438 HDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRSFTMSLTRDCICPMV 494
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 95/195 (48%), Positives = 131/195 (67%), Gaps = 2/195 (1%)
Query: 657 SKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLK 716
S+ RD VD C LT+S VR ++P C+F+E+++ G A L PGVY++ L+
Sbjct: 124 SESRDS--VDAGCRKLTASWVRAMAAENPDVPTCEFFEQYEKAGSSAVLPPGVYTLQDLR 181
Query: 717 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 776
G + G CPYFLAR + A +VVYSY YLLDPK+A+++SKE+ R SVVVFDEAHNIDN
Sbjct: 182 AFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNIDN 241
Query: 777 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARET 836
VC+++LSV + R+TIE A N+ + ++ KE D+ +LR EY RLVEGL + +
Sbjct: 242 VCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPIS 301
Query: 837 DVVLANPVLPDEILQ 851
D L+NP LPD+IL+
Sbjct: 302 DTWLSNPALPDDILK 316
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 103/161 (63%), Gaps = 7/161 (4%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ++D+ V+FPY++IYPEQYAYM+ELK+ALDAKGHCLLEMP+GTG T +LLSLI +Y
Sbjct: 1 MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGXTIALLSLITSYA 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+ P + KL+YC+RTV E+EK + EL L DY ++ + + LSSRKNLC++
Sbjct: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPN 120
Query: 543 F---ETRD--DISVIRNYGQLLVDIACVVPDGVVC-FFTSY 577
E+RD D + + +A PD C FF Y
Sbjct: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPDVPTCEFFEQY 161
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ + L + + F+ R D+ V+RNYG+LL+++ VPDG+VCFF SY Y++
Sbjct: 489 CICP-MVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFVSYSYMDG 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
++ SW + GI+ + + KL+FIETQD +++
Sbjct: 548 IINSWNETGILKEIMQHKLVFIETQDVVET 577
>gi|44889982|emb|CAF32100.1| DNA repair helicase, putative [Aspergillus fumigatus]
Length = 767
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/418 (46%), Positives = 266/418 (63%), Gaps = 71/418 (16%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C ++E V L
Sbjct: 120 VKREKSGTVVDARCRSLTAGFVKEKKERGEDVELCIYHEVCADV---------------L 164
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+++ ++ C +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNID
Sbjct: 165 RKLWVQMPYC------------NVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 212
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+++LS+ I ++ KA LE + EMK +D+ KL+ EY++LVEGLR+A+ AR+
Sbjct: 213 NVCIEALSIDITEDSLRKATRGANNLERKISEMKSSDAEKLQNEYSKLVEGLREAEQARD 272
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANPVLPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V + E+P +FL
Sbjct: 273 EDQFIANPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPPSFL-- 330
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
T +KD++ IERKPLRFCA
Sbjct: 331 ---------------------------------------THVKDLT---FIERKPLRFCA 348
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ N+ D+ L + ATLVS+Y KGF +I+EPF + TVPNPVL+F
Sbjct: 349 ERLTSLVRTLELINIEDYQPLQEVATFATLVSTYDKGFLLILEPFESETATVPNPVLHFT 408
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGTLSPL+MYPK+L F V+ S++MTLAR LPM+
Sbjct: 409 CLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFPTVLQESYTMTLARRSFLPMI 466
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 125/197 (63%), Gaps = 27/197 (13%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C ++E V
Sbjct: 119 SVKREKSGTVVDARCRSLTAGFVKEKKERGEDVELCIYHEVCADV--------------- 163
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L+++ ++ C +++YSYHYLLDPKIA VS+EL++ +VVFDEAHNI
Sbjct: 164 LRKLWVQMPYC------------NVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNI 211
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC+++LS+ I ++ KA LE + EMK +D+ KL+ EY++LVEGLR+A+ AR
Sbjct: 212 DNVCIEALSIDITEDSLRKATRGANNLERKISEMKSSDAEKLQNEYSKLVEGLREAEQAR 271
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANPVLPD++L+
Sbjct: 272 DEDQFIANPVLPDDLLK 288
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 89/138 (64%), Gaps = 14/138 (10%)
Query: 430 DLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLD 489
DLPV FPY IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT SLLSLI+AY +P +
Sbjct: 7 DLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVSLLSLIIAYQQHYP-E 65
Query: 490 VTKLLYCSRTVPEIEKVVEELARLFDY---YIKHNEEINMTGLVLSSRKNLCIHSEFETR 546
KL+YCSRT+ EIEK + EL L + + + E+ G L+SRKNLC+H
Sbjct: 66 HRKLIYCSRTMSEIEKALAELKELMKFRSQQLGYTEDFRALG--LTSRKNLCLHP----- 118
Query: 547 DDISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 119 ---SVKREKSGTVVDARC 133
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 76/128 (59%), Gaps = 16/128 (12%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYGIM+ AD+RF + KR++L
Sbjct: 607 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFQK--KRNQL 663
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSL--------DQLL 927
PKWI + + ++ TNLST+ AV +K +LR MAQPF +D G++ SL Q+L
Sbjct: 664 PKWISQAMLESETNLSTDMAVATAKNFLRTMAQPFKAKDQEGISTWSLADIERHREKQML 723
Query: 928 EKEHARAE 935
E+E R E
Sbjct: 724 EEERVRRE 731
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG ++++ + + PDG+V FF SYLY+ES+++ W GI+D++
Sbjct: 476 ISSSFQIRNDPGVVRNYGNIVLEFSRITPDGIVVFFPSYLYMESIISMWQGMGILDSIWN 535
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA +S
Sbjct: 536 YKLILVETPDAQES 549
>gi|392567211|gb|EIW60386.1| DNA repair helicase [Trametes versicolor FP-101664 SS1]
Length = 804
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/421 (45%), Positives = 276/421 (65%), Gaps = 50/421 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKE+ GK+VD RC LT+++ + R G ++ +CD++E+ + + PG++++
Sbjct: 126 VSKEKKGKVVDARCRDLTNAAACQKGRENPG-SVDLCDWHEELGKLEPGNLIPPGIWTLA 184
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+ + GR+ +CPYFL R+ + +++YS+HYLLDPK+A VSKE+ + ++VVFDEAHN
Sbjct: 185 DVLQHGRDNRVCPYFLVRRMMPFVDVIIYSFHYLLDPKVAEQVSKEITKDAIVVFDEAHN 244
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + R ++ A ++ L + E+K+ D++KL++EY RLVEGL++A A
Sbjct: 245 IDNVCIESLSIDLTRPMLDSAARSVVRLGDKIDEIKKTDASKLQDEYMRLVEGLQEANDA 304
Query: 179 RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL 238
D ++NPVLP+++L+E +PGNIR AEHFV FLKRF+EYLKTR+RV VV E+P +FL
Sbjct: 305 E--DAFVSNPVLPEDLLKEAIPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAETPLSFL 362
Query: 239 KDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRF 298
+ LKDI+ IER+PLRF
Sbjct: 363 Q-----------------------------------------HLKDITY---IERRPLRF 378
Query: 299 CAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKG-FAIIVEPFSDKAPTVPNPVL 357
CAERL SL+RTLE+ + +FSSL + ATLV++Y KG + P+ +A TVPNP+
Sbjct: 379 CAERLQSLVRTLEVNRVDEFSSLQKVASFATLVATYEKGTLYPLAFPYETEAATVPNPIF 438
Query: 358 YFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM 417
+ CLD ++AIKPVF+RF TVVITSGTLSPLDMYPK+L F PV+ +++M+L R LP+
Sbjct: 439 HLTCLDPAIAIKPVFERFSTVVITSGTLSPLDMYPKMLQFTPVVQETYAMSLTRNSFLPL 498
Query: 418 V 418
V
Sbjct: 499 V 499
Score = 179 bits (453), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 149/228 (65%), Gaps = 16/228 (7%)
Query: 626 ASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSV--RDRHKA 683
AS+Y G L RK L I + VSKE+ GK+VD RC LT+++ + R
Sbjct: 107 ASFYGIG----LTSRKNLCIHPE-------VSKEKKGKVVDARCRDLTNAAACQKGRENP 155
Query: 684 GENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYS 743
G ++ +CD++E+ + + PG++++ + + GR+ +CPYFL R+ + +++YS
Sbjct: 156 G-SVDLCDWHEELGKLEPGNLIPPGIWTLADVLQHGRDNRVCPYFLVRRMMPFVDVIIYS 214
Query: 744 YHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEG 803
+HYLLDPK+A VSKE+ + ++VVFDEAHNIDNVC++SLS+ + R ++ A ++ L
Sbjct: 215 FHYLLDPKVAEQVSKEITKDAIVVFDEAHNIDNVCIESLSIDLTRPMLDSAARSVVRLGD 274
Query: 804 TLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
+ E+K+ D++KL++EY RLVEGL++A A D ++NPVLP+++L+
Sbjct: 275 KIDEIKKTDASKLQDEYMRLVEGLQEANDAE--DAFVSNPVLPEDLLK 320
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 91/126 (72%), Gaps = 8/126 (6%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLP+ FPY+ IYPEQYAYM +LK+ LDA GHCLLEMPSGTGKT SLLSLIV+Y
Sbjct: 1 MKFFIDDLPIIFPYDRIYPEQYAYMCDLKRTLDATGHCLLEMPSGTGKTVSLLSLIVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNE-------EINMTGLVLSSRKN 536
+P KL+YCSRTVPEIEK + EL RL DY +H E E + G+ L+SRKN
Sbjct: 61 QFYPTK-RKLIYCSRTVPEIEKALAELKRLMDYRKEHAETEEQREKEASFYGIGLTSRKN 119
Query: 537 LCIHSE 542
LCIH E
Sbjct: 120 LCIHPE 125
Score = 95.9 bits (237), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 83/124 (66%), Gaps = 10/124 (8%)
Query: 821 ARLVEGLRDAQSARET-----DVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRDA RE+ D + +L+GKTD+G+M+FADKRFAR+DKR+KL
Sbjct: 640 ARL-EYLRDAYRIRESEFLGFDAMRNAAQCVGRVLRGKTDWGLMVFADKRFARADKRAKL 698
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
P+WI +Y+T+ NLST+ A+ LSK+++R ++Q E+ G++L +L + E A+A+
Sbjct: 699 PRWINQYITETAANLSTDMALTLSKQFMRVISQN-PNENQTGISLWTLADV---EKAQAK 754
Query: 936 EEEV 939
+ E+
Sbjct: 755 QREL 758
Score = 92.4 bits (228), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 72/109 (66%), Gaps = 5/109 (4%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +L++ + +VPDG+V FF SYLY+ES+VA+W D GI++ + K
Sbjct: 509 ISSRFEVRNDPAVVRNFGSILIEYSKIVPDGIVAFFPSYLYMESIVAAWNDMGILNEVWK 568
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENI 687
KL+F+ET DA + S++ E + D GR L S + R K E I
Sbjct: 569 HKLIFVETPDA-NETSIALENYRRACDNGRGAVLLSVA---RGKVSEGI 613
>gi|119186659|ref|XP_001243936.1| conserved hypothetical protein [Coccidioides immitis RS]
Length = 757
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/367 (51%), Positives = 246/367 (67%), Gaps = 44/367 (11%)
Query: 52 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 111
PGV+++ L G + CPYF AR+ + +++YSYHYLLDPKIA VSKEL++ +V
Sbjct: 133 PGVFTLDGLIRYGEQHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIV 192
Query: 112 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEG 171
VFDEAHNIDNVC++SLS+ I ++ KA L + EMK +D+AKL++EY +LVEG
Sbjct: 193 VFDEAHNIDNVCIESLSIDITEDSLRKAGRGANNLGHKIDEMKRSDAAKLQKEYEKLVEG 252
Query: 172 LRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQ 231
LR+A ARE D ++ANP LPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V +
Sbjct: 253 LREADQAREEDQLMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLHAIS 312
Query: 232 ESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCI 291
E+P +FL + LKD++ I
Sbjct: 313 ETPLSFL-----------------------------------------SHLKDLTY---I 328
Query: 292 ERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPT 351
ERKPLRFCAERL SL+RTLE+ N+ ++ L I ATLVS+Y KGF +I+EPF T
Sbjct: 329 ERKPLRFCAERLTSLVRTLELMNIEEYRPLQEIATFATLVSTYEKGFLLILEPFESDTAT 388
Query: 352 VPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLAR 411
VPNPVL+F CLD+++AIKPVF+RF +V+ITSGTLSPL+MYPK+L FQ V+ S+SMTLAR
Sbjct: 389 VPNPVLHFTCLDAAIAIKPVFERFGSVIITSGTLSPLEMYPKMLGFQTVLQESYSMTLAR 448
Query: 412 PCLLPMV 418
LPM+
Sbjct: 449 RSFLPMI 455
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 104/145 (71%)
Query: 707 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 766
PGV+++ L G + CPYF AR+ + +++YSYHYLLDPKIA VSKEL++ +V
Sbjct: 133 PGVFTLDGLIRYGEQHKQCPYFSARRMMPFCNVIIYSYHYLLDPKIAERVSKELSKDCIV 192
Query: 767 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEG 826
VFDEAHNIDNVC++SLS+ I ++ KA L + EMK +D+AKL++EY +LVEG
Sbjct: 193 VFDEAHNIDNVCIESLSIDITEDSLRKAGRGANNLGHKIDEMKRSDAAKLQKEYEKLVEG 252
Query: 827 LRDAQSARETDVVLANPVLPDEILQ 851
LR+A ARE D ++ANP LPD++L+
Sbjct: 253 LREADQAREEDQLMANPALPDDLLK 277
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/120 (58%), Positives = 83/120 (69%), Gaps = 6/120 (5%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAY+ +LKK LD GHC+LEMPSGTGKT SLLSLI+AY
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYICDLKKTLDVGGHCVLEMPSGTGKTVSLLSLIIAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY---YIKHNEEINMTGLVLSSRKNLCIH 540
+P KL+YCSRT+ EIEK + EL L Y + + E+ G L+SRKNLC+H
Sbjct: 61 QHYP-SHRKLIYCSRTMSEIEKALTELRELMKYREQQLGYTEDFRALG--LTSRKNLCLH 117
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 64/92 (69%), Gaps = 5/92 (5%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYGIM+ AD+RF + KR++LPKWI + + ++ TNLST+ AV +K +LR MAQ
Sbjct: 628 VLRGKDDYGIMVLADRRFQK--KRNQLPKWISQNILESETNLSTDMAVATAKSFLRTMAQ 685
Query: 909 PFTREDMLGVALLSLDQL---LEKEHARAEEE 937
PF +D G++ SL L LEK+ AE++
Sbjct: 686 PFKAKDQEGISTWSLADLERHLEKQKGEAEKK 717
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG LL++ + + PDG+V FF SYLY+ES+++ W GI+D++
Sbjct: 465 ISSAFKIRNDPGVVRNYGNLLLEFSRITPDGIVVFFPSYLYMESIISMWQGMGILDSIWN 524
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ +S
Sbjct: 525 YKLILVETPDSQES 538
>gi|224062561|ref|XP_002300852.1| predicted protein [Populus trichocarpa]
gi|222842578|gb|EEE80125.1| predicted protein [Populus trichocarpa]
Length = 758
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/409 (45%), Positives = 257/409 (62%), Gaps = 44/409 (10%)
Query: 10 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGL 69
VD C T+S VR N+ C+F+E ++ A L PGVY++ L+ G+E G
Sbjct: 130 VDAACRKRTASWVRALAAENPNVETCEFFENYERAASGAVLPPGVYTLQDLRAYGKEKGW 189
Query: 70 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 129
CPYFLAR + A +VVYSY YLLDPK+A ++SKE+ + SVVVFDEAHNIDNVC+++LSV
Sbjct: 190 CPYFLARHMVQLANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSV 249
Query: 130 RINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPV 189
+ R+T++ A NI +E + K D+ +LR+EY RLV GL + + +D L+NP
Sbjct: 250 SVRRQTLDGASRNISRIEQEINRFKATDANRLRDEYKRLVNGLALSGNLPGSDSWLSNPA 309
Query: 190 LPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSM 249
LPD+IL+E VPGNIR AEHF+ L+R ++YL RL + V +ESP +F+ I+++
Sbjct: 310 LPDDILREAVPGNIRRAEHFLHVLRRLLQYLTVRLDTENVEKESPISFVASINNQAG--- 366
Query: 250 ISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRT 309
I++K L+FC +RL SL+ T
Sbjct: 367 -----------------------------------------IDQKTLKFCYDRLHSLMLT 385
Query: 310 LEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIK 369
LEIT+ +F + I ATLV +Y++GF+II+EPF ++ P +P+PVL C D+SLAIK
Sbjct: 386 LEITDTDEFLHVQTICDFATLVGTYSRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAIK 445
Query: 370 PVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
PVFDRFQ+VVITSGTLSP+D+YP++LNF PV+ SF M+L R C+ PMV
Sbjct: 446 PVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMV 494
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/187 (47%), Positives = 123/187 (65%)
Query: 665 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGL 724
VD C T+S VR N+ C+F+E ++ A L PGVY++ L+ G+E G
Sbjct: 130 VDAACRKRTASWVRALAAENPNVETCEFFENYERAASGAVLPPGVYTLQDLRAYGKEKGW 189
Query: 725 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 784
CPYFLAR + A +VVYSY YLLDPK+A ++SKE+ + SVVVFDEAHNIDNVC+++LSV
Sbjct: 190 CPYFLARHMVQLANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSV 249
Query: 785 RINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPV 844
+ R+T++ A NI +E + K D+ +LR+EY RLV GL + + +D L+NP
Sbjct: 250 SVRRQTLDGASRNISRIEQEINRFKATDANRLRDEYKRLVNGLALSGNLPGSDSWLSNPA 309
Query: 845 LPDEILQ 851
LPD+IL+
Sbjct: 310 LPDDILR 316
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 105/161 (65%), Gaps = 7/161 (4%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M I+D+ V+FPY++IYPEQY+YMVELK+ALDAKGHCLLEMP+GTGKT +LLSLI +Y
Sbjct: 1 MKFQIEDVTVYFPYDHIYPEQYSYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYT 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHS- 541
+ P KL+YC+RTV E+EK + EL L +Y +KH + + LSSRKNLC++
Sbjct: 61 ISKPQGAIKLIYCTRTVHEMEKTLAELKLLHNYQVKHLGPAAKILAIGLSSRKNLCVNPN 120
Query: 542 --EFETRD--DISVIRNYGQLLVDIACVVPDGVVC-FFTSY 577
E RD D + + + +A P+ C FF +Y
Sbjct: 121 VLEANNRDSVDAACRKRTASWVRALAAENPNVETCEFFENY 161
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ + L + + F+ R D V+RNYG+LLV++ +VPDG+VCFF SY Y++
Sbjct: 489 CICP-MVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGIVCFFVSYSYMDG 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
++ +W + G++ + + KL+FIETQD +++
Sbjct: 548 IINTWNESGLLKEIMQHKLVFIETQDVVET 577
Score = 85.9 bits (211), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 69/114 (60%), Gaps = 6/114 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD +E D + + + +++ K DYG+MIFADKR++R DKRSKL
Sbjct: 635 ARL-EYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEK 929
P WI +L D NLST+ A+ +++ +LR+MAQP+ + G L + LEK
Sbjct: 694 PGWILSHLRDAHLNLSTDMALHIAREFLRKMAQPYDKTGSSGKKTLLSQEDLEK 747
>gi|357134709|ref|XP_003568958.1| PREDICTED: DNA repair helicase UVH6-like [Brachypodium distachyon]
Length = 758
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 205/490 (41%), Positives = 284/490 (57%), Gaps = 65/490 (13%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAG-ENIPVCDFYEKFDAVGREAPLA----PGVY 55
S RD VD C LT+S VRD+ + ++ P+CDF+E FD LA PGVY
Sbjct: 121 ASAARDS--VDTACRRLTASWVRDKAASDPDSTPLCDFFESFDRAAAAGDLASYMPPGVY 178
Query: 56 SITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDE 115
++ L+ +GRE +CPY+LARQ + +A +VVYSY YLLDPK+A++VS+E+ + VVVFDE
Sbjct: 179 TLADLRSLGRERRICPYYLARQMVKYANVVVYSYQYLLDPKVASIVSREMQKECVVVFDE 238
Query: 116 AHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDA 175
AHNIDNVC+++LSV I ++T+E A N++ + + K D+ +LR EY RLV+GL
Sbjct: 239 AHNIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLAQR 298
Query: 176 QSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPA 235
+ +D LANP LPD+IL+E VPGNIR AEHF+ LKR + +L RL + V E P
Sbjct: 299 GNLPISDAWLANPSLPDDILKEAVPGNIRRAEHFLAVLKRLVRFLDGRLETENVENEMPV 358
Query: 236 TFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKP 295
+F+ I S+ I+++
Sbjct: 359 SFVASIHSQAG--------------------------------------------IDQRM 374
Query: 296 LRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNP 355
LRFC +RL SLL TLEIT+ +F + I ATL+ +YT+GF+II+EP+ D+ P + +P
Sbjct: 375 LRFCYDRLQSLLLTLEITDTDEFMHIQTICDFATLIGTYTRGFSIIIEPYDDRMPEIRDP 434
Query: 356 VLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLL 415
V+ C D+SLAI+PVFDRFQTVVITSGTLSP+D+YP++LNF PVI SF+M+L R C+
Sbjct: 435 VIQLSCHDASLAIQPVFDRFQTVVITSGTLSPIDLYPRLLNFNPVISRSFTMSLTRDCIC 494
Query: 416 PMVRENYAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSL 475
PMV + D LPV ++ M + G LLEM S
Sbjct: 495 PMVLTRGS-----DQLPVSTKFD---------MRSDPGVVRNYGRLLLEMASAVPDGIVC 540
Query: 476 LSLIVAYMNA 485
+ +YM+
Sbjct: 541 FFVSYSYMDG 550
Score = 192 bits (488), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 141/221 (63%), Gaps = 12/221 (5%)
Query: 636 NLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAG-ENIPVCDFYE 694
L RK L + Q S S RD VD C LT+S VRD+ + ++ P+CDF+E
Sbjct: 106 GLSSRKNLCVHPQ-----ASASAARDS--VDTACRRLTASWVRDKAASDPDSTPLCDFFE 158
Query: 695 KFDAVGREAPLA----PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDP 750
FD LA PGVY++ L+ +GRE +CPY+LARQ + +A +VVYSY YLLDP
Sbjct: 159 SFDRAAAAGDLASYMPPGVYTLADLRSLGRERRICPYYLARQMVKYANVVVYSYQYLLDP 218
Query: 751 KIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKE 810
K+A++VS+E+ + VVVFDEAHNIDNVC+++LSV I ++T+E A N++ + + K
Sbjct: 219 KVASIVSREMQKECVVVFDEAHNIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRFKA 278
Query: 811 ADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
D+ +LR EY RLV+GL + +D LANP LPD+IL+
Sbjct: 279 TDANRLRAEYNRLVDGLAQRGNLPISDAWLANPSLPDDILK 319
Score = 126 bits (317), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 99/161 (61%), Gaps = 8/161 (4%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ++ L V FPY IYPEQ+AYM +LK+ALDA+GH LLEMP+GTGKT +L+SLI +Y
Sbjct: 1 MKFDLEGLTVHFPYAAIYPEQHAYMGDLKRALDARGHALLEMPTGTGKTAALISLITSYS 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIH--- 540
+P +LLYC+RTV E+EK + EL LF ++ ++ L LSSRKNLC+H
Sbjct: 61 LTNPSRPLRLLYCTRTVHEMEKTLAELRLLFS-HLPPAAARSLLALGLSSRKNLCVHPQA 119
Query: 541 SEFETRD--DISVIRNYGQLLVDIACVVPDGV-VC-FFTSY 577
S RD D + R + D A PD +C FF S+
Sbjct: 120 SASAARDSVDTACRRLTASWVRDKAASDPDSTPLCDFFESF 160
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ + L + + F+ R D V+RNYG+LL+++A VPDG+VCFF SY Y++
Sbjct: 492 CICP-MVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPDGIVCFFVSYSYMDG 550
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+V +W + GI+ ++ + KL+FIET D +++
Sbjct: 551 IVNNWNEMGILQDIMQHKLVFIETPDVVET 580
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 50/69 (72%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+MIFADKR++R DKRSKLP WI +L D NLST+ A+ ++ +LR+MAQ
Sbjct: 670 VIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHTAREFLRRMAQ 729
Query: 909 PFTREDMLG 917
P+ + G
Sbjct: 730 PYDKTGSGG 738
>gi|196006780|ref|XP_002113256.1| hypothetical protein TRIADDRAFT_50379 [Trichoplax adhaerens]
gi|190583660|gb|EDV23730.1| hypothetical protein TRIADDRAFT_50379 [Trichoplax adhaerens]
Length = 720
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 200/418 (47%), Positives = 272/418 (65%), Gaps = 85/418 (20%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
+SKERDGK+VDGRC LT+S VR H+ ++ VC F+EKFD GR++ L PGVY++ L
Sbjct: 121 ISKERDGKVVDGRCLGLTASYVRRNHQQDRSVEVCSFFEKFDTFGRDSVLPPGVYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K+ G + G CPYFLAR +I+HA +VVYSY+YLLDPKIA++VSKE+++ SVVVFDEAHNID
Sbjct: 181 KDFGAKQGWCPYFLARHSILHANVVVYSYYYLLDPKIADLVSKEMSKQSVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++S++V+I+R+TI++ + ++ +K++KE D KL+EEY RLVEG+
Sbjct: 241 NVCIESMTVKISRKTIDRCQTALDVMDKKVKKIKETDKKKLQEEYRRLVEGIY------- 293
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
++PD+ + ++ VQ VVQE+P +FL
Sbjct: 294 --------LIPDKTIALLI--------------------------VQHVVQETPMSFL-- 317
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
H+K VCI+RKPLRFC+
Sbjct: 318 ---------------------HHIK---------------------ETVCIDRKPLRFCS 335
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+ TLEI N ++F++L ATLVS+Y+KGF +I+EPF D+APT+P+PVL+F
Sbjct: 336 ERLQSLMHTLEIINNSEFAALAAAASFATLVSTYSKGFTLIIEPFDDRAPTIPDPVLHFS 395
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+S+AIKPVFDRFQ+VVITSGTLSPLDMYPKILNF+PV M S++MTLARP L P++
Sbjct: 396 CMDASIAIKPVFDRFQSVVITSGTLSPLDMYPKILNFRPVSMSSYTMTLARPSLCPLI 453
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 137/172 (79%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
+SKERDGK+VDGRC LT+S VR H+ ++ VC F+EKFD GR++ L PGVY++ L
Sbjct: 121 ISKERDGKVVDGRCLGLTASYVRRNHQQDRSVEVCSFFEKFDTFGRDSVLPPGVYNLDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K+ G + G CPYFLAR +I+HA +VVYSY+YLLDPKIA++VSKE+++ SVVVFDEAHNID
Sbjct: 181 KDFGAKQGWCPYFLARHSILHANVVVYSYYYLLDPKIADLVSKEMSKQSVVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL 827
NVC++S++V+I+R+TI++ + ++ +K++KE D KL+EEY RLVEG+
Sbjct: 241 NVCIESMTVKISRKTIDRCQTALDVMDKKVKKIKETDKKKLQEEYRRLVEGI 292
Score = 172 bits (437), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 84/130 (64%), Positives = 98/130 (75%), Gaps = 1/130 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L ID L V+FPY+YIYPEQY+YM ELK+ALDAKGHC LEMPSGTGKT SLLSLI+AY
Sbjct: 1 MKLNIDGLLVYFPYDYIYPEQYSYMCELKRALDAKGHCALEMPSGTGKTISLLSLIIAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+PL +TKL+YCSRTVPEIEK +EE+ L +YY K E+ GL LS+RKNLCIH E
Sbjct: 61 KVYPLHITKLIYCSRTVPEIEKALEEMKILLEYYEKQTGEKQKFLGLGLSARKNLCIHPE 120
Query: 543 FETRDDISVI 552
D V+
Sbjct: 121 ISKERDGKVV 130
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 89/129 (68%), Gaps = 11/129 (8%)
Query: 813 SAKLREEYARLVEGLRDAQSARETDVVL-------ANPVLPDEILQGKTDYGIMIFADKR 865
S KLR ARL + LR+ RE D + A ++GK+DYGIM+FADKR
Sbjct: 589 SRKLR---ARL-DYLRENYQIRENDFLTFDAMRHAAQASCVGRAIRGKSDYGIMVFADKR 644
Query: 866 FARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQ 925
++R DK+ KLPKWIQEYL D++ +L+T+EAVQ+SK++LRQMA PF +ED LG++LL+L+Q
Sbjct: 645 YSRLDKKGKLPKWIQEYLKDSVCDLTTDEAVQISKKFLRQMAAPFNKEDQLGLSLLTLEQ 704
Query: 926 LLEKEHARA 934
L +E A
Sbjct: 705 LESREGQEA 713
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 57/70 (81%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE+R+DI+V+RNYG LL ++ VPDGVVCFF SY Y+ESVV+ W DQGI++N+ +
Sbjct: 463 ISSKFESREDIAVMRNYGNLLAELTASVPDGVVCFFPSYTYMESVVSFWCDQGIMNNIIR 522
Query: 640 RKLLFIETQD 649
KLLFIETQD
Sbjct: 523 NKLLFIETQD 532
>gi|154276530|ref|XP_001539110.1| DNA repair helicase RAD3 [Ajellomyces capsulatus NAm1]
gi|150414183|gb|EDN09548.1| DNA repair helicase RAD3 [Ajellomyces capsulatus NAm1]
Length = 683
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/418 (45%), Positives = 260/418 (62%), Gaps = 83/418 (19%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ +C ++E
Sbjct: 45 VKREKSGAVVDARCRSLTAGFVKEKKEKGEDVELCIYHE--------------------- 83
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ C K+++YSYHYLLDPKIA VS+EL++ S+VVFDEAHNID
Sbjct: 84 ------MPFC------------KVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNID 125
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA LE ++EMK +D+ KL+ EY +LVEGLR+A AR+
Sbjct: 126 NVCIESLSIDLTEDSLRKASRGANNLERKIEEMKRSDAEKLQNEYQKLVEGLREADEARQ 185
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ ++ANP LPD++L+E VPGNIR AEHFV FLKRFIEYLKTR+++ + E+P +FL
Sbjct: 186 EEQLMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKITHTISETPLSFL-- 243
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
LKD++ IERKPLRFCA
Sbjct: 244 ---------------------------------------AHLKDLT---FIERKPLRFCA 261
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ NL D+ L + ATLV++Y KGF +I+EPF + TVPNP+L+F
Sbjct: 262 ERLTSLVRTLELMNLEDYQPLQQVAAFATLVATYEKGFLLILEPFESETATVPNPILHFT 321
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V++TSGTLSPL+MYPK+L F V+ S++MTLAR LPMV
Sbjct: 322 CLDAAIAIKPVFDRFSSVIVTSGTLSPLEMYPKMLKFTTVLQESYTMTLARRSFLPMV 379
Score = 159 bits (402), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 120/197 (60%), Gaps = 39/197 (19%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ +C ++E
Sbjct: 44 SVKREKSGAVVDARCRSLTAGFVKEKKEKGEDVELCIYHE-------------------- 83
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ C K+++YSYHYLLDPKIA VS+EL++ S+VVFDEAHNI
Sbjct: 84 -------MPFC------------KVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNI 124
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA LE ++EMK +D+ KL+ EY +LVEGLR+A AR
Sbjct: 125 DNVCIESLSIDLTEDSLRKASRGANNLERKIEEMKRSDAEKLQNEYQKLVEGLREADEAR 184
Query: 835 ETDVVLANPVLPDEILQ 851
+ + ++ANP LPD++L+
Sbjct: 185 QEEQLMANPALPDDLLK 201
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 75/123 (60%), Gaps = 10/123 (8%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +++GK DYG+MI AD+RF + +R++L
Sbjct: 520 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVIRGKDDYGVMILADRRFQK--RRTQL 576
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + ++ TNLST+ AV +K +LR MAQPF +D G++ SL L + H + +
Sbjct: 577 PKWISQAMLESETNLSTDMAVATAKSFLRTMAQPFKSKDQEGISTWSLTDL--EYHVKKQ 634
Query: 936 EEE 938
EE
Sbjct: 635 REE 637
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 52/74 (70%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F+ R+D V+RNYG LL++ + + PDGVV FF SYLY+ES+++ W GI+D +
Sbjct: 389 ISSSFQIRNDPGVVRNYGNLLLEFSRITPDGVVVFFPSYLYMESIISMWQGMGILDLVWN 448
Query: 640 RKLLFIETQDALDS 653
KL+ +ET D+ +S
Sbjct: 449 YKLILVETPDSQES 462
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISV---IRN 595
I S F+ R+D V+RNYG LL++ + + PDGVV FF SYLY+ES+ + + + N
Sbjct: 389 ISSSFQIRNDPGVVRNYGNLLLEFSRITPDGVVVFFPSYLYMESIISMWQGMGILDLVWN 448
Query: 596 YGQLLVD 602
Y +LV+
Sbjct: 449 YKLILVE 455
>gi|125550818|gb|EAY96527.1| hypothetical protein OsI_18432 [Oryza sativa Indica Group]
Length = 734
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/481 (41%), Positives = 281/481 (58%), Gaps = 63/481 (13%)
Query: 10 VDGRCHSLTSSSVRDRHKAG-ENIPVCDFYEKFDAVGREAPLA----PGVYSITKLKEMG 64
VD C LT+S VRDR + ++ P+CDF+E FD LA PGVY++ L+ +G
Sbjct: 104 VDTACRRLTASWVRDRAASDPDSTPLCDFFESFDRAAAAGDLASYMPPGVYTLADLRALG 163
Query: 65 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 124
R+ G+CPYFLARQ + +A +VVYSY YL+DPK+A++VS+E+ + VVVFDEAHNIDNVC+
Sbjct: 164 RDRGICPYFLARQMVKYANVVVYSYQYLIDPKVASIVSREMQKECVVVFDEAHNIDNVCI 223
Query: 125 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVV 184
++LSV I ++T+E A N++ + + K D+ +LR EY RLV+GL + +D
Sbjct: 224 EALSVSIRKQTLEGAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLAQRGNLPISDAW 283
Query: 185 LANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSK 244
LANP LP++IL+E VPGNIR AEHF+ L+R + +L RL + V E P F+ I S+
Sbjct: 284 LANPALPEDILKEAVPGNIRRAEHFLAVLRRLVRFLDGRLETENVENEMPVAFVASIHSQ 343
Query: 245 PAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLA 304
I++K LRFC +RL
Sbjct: 344 AG--------------------------------------------IDQKMLRFCYDRLH 359
Query: 305 SLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDS 364
SL+ TLEIT+ +F + I ATL+ +YT+GF+II+EP+ ++ P + +PV+ C D+
Sbjct: 360 SLMLTLEITDTDEFMHIQTICDFATLIGTYTRGFSIIIEPYDERMPDIRDPVIQLSCHDA 419
Query: 365 SLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMVRENYAM 424
SLAI+PVF+RFQTVVITSGTLSP+D+YP++LNF PVI SF+M+L R C+ PMV +
Sbjct: 420 SLAIQPVFERFQTVVITSGTLSPIDLYPRLLNFNPVISRSFTMSLTRDCICPMVLTRGS- 478
Query: 425 GLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN 484
D LPV ++ M + G LLEM S + +YM+
Sbjct: 479 ----DQLPVSTKFD---------MRSDPGVVRNYGRLLLEMASAVPDGIVCFFVSYSYMD 525
Query: 485 A 485
Sbjct: 526 G 526
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 142/221 (64%), Gaps = 12/221 (5%)
Query: 636 NLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAG-ENIPVCDFYE 694
L RK L + Q S + RD VD C LT+S VRDR + ++ P+CDF+E
Sbjct: 82 GLSSRKNLCVHPQ-----ASAAAARDS--VDTACRRLTASWVRDRAASDPDSTPLCDFFE 134
Query: 695 KFDAVGREAPLA----PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDP 750
FD LA PGVY++ L+ +GR+ G+CPYFLARQ + +A +VVYSY YL+DP
Sbjct: 135 SFDRAAAAGDLASYMPPGVYTLADLRALGRDRGICPYFLARQMVKYANVVVYSYQYLIDP 194
Query: 751 KIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKE 810
K+A++VS+E+ + VVVFDEAHNIDNVC+++LSV I ++T+E A N++ + + K
Sbjct: 195 KVASIVSREMQKECVVVFDEAHNIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRFKA 254
Query: 811 ADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
D+ +LR EY RLV+GL + +D LANP LP++IL+
Sbjct: 255 TDANRLRAEYNRLVDGLAQRGNLPISDAWLANPALPEDILK 295
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 83/137 (60%), Gaps = 8/137 (5%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M ELK+ALDA+GH LLEMP+GTGKT +L+SLI +Y A P +L+YC+RTV E+EK +
Sbjct: 1 MGELKRALDARGHALLEMPTGTGKTAALISLITSYSLASPSRPLRLIYCTRTVHEMEKTL 60
Query: 508 EELARLFDYYIKHNEEINMTGLVLSSRKNLCIH---SEFETRD--DISVIRNYGQLLVDI 562
EL LF ++ ++ L LSSRKNLC+H S RD D + R + D
Sbjct: 61 AELRLLF-AHLPAAASRSLLALGLSSRKNLCVHPQASAAAARDSVDTACRRLTASWVRDR 119
Query: 563 ACVVPDGV-VC-FFTSY 577
A PD +C FF S+
Sbjct: 120 AASDPDSTPLCDFFESF 136
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ + L + + F+ R D V+RNYG+LL+++A VPDG+VCFF SY Y++
Sbjct: 468 CICP-MVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPDGIVCFFVSYSYMDG 526
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+V SW + GI+ ++ + KL+FIET D +++
Sbjct: 527 IVNSWNEMGILQDIMQHKLVFIETPDVVET 556
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 58/88 (65%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+MIFADKR++R DKRSKLP WI +L D NLST+ A+ +++ +LR+MAQ
Sbjct: 646 VIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIAREFLRRMAQ 705
Query: 909 PFTREDMLGVALLSLDQLLEKEHARAEE 936
P+ + G L ++ L+ A E
Sbjct: 706 PYDKTGSGGNKTLLTEEDLQNMAQDAME 733
>gi|115462055|ref|NP_001054627.1| Os05g0144800 [Oryza sativa Japonica Group]
gi|51038192|gb|AAT93995.1| putative nucleotide excision repair protein XP-D [Oryza sativa
Japonica Group]
gi|113578178|dbj|BAF16541.1| Os05g0144800 [Oryza sativa Japonica Group]
gi|222630172|gb|EEE62304.1| hypothetical protein OsJ_17093 [Oryza sativa Japonica Group]
Length = 758
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/481 (41%), Positives = 281/481 (58%), Gaps = 63/481 (13%)
Query: 10 VDGRCHSLTSSSVRDRHKAG-ENIPVCDFYEKFDAVGREAPLA----PGVYSITKLKEMG 64
VD C LT+S VRDR + ++ P+CDF+E FD LA PGVY++ L+ +G
Sbjct: 128 VDTACRRLTASWVRDRAASDPDSTPLCDFFESFDRAAAAGDLASYMPPGVYTLADLRALG 187
Query: 65 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 124
R+ G+CPYFLARQ + +A +VVYSY YL+DPK+A++VS+E+ + VVVFDEAHNIDNVC+
Sbjct: 188 RDRGICPYFLARQMVKYANVVVYSYQYLIDPKVASIVSREMQKECVVVFDEAHNIDNVCI 247
Query: 125 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVV 184
++LSV I ++T+E A N++ + + K D+ +LR EY RLV+GL + +D
Sbjct: 248 EALSVSIRKQTLEGAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLAQRGNLPISDAW 307
Query: 185 LANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSK 244
LANP LP++IL+E VPGNIR AEHF+ L+R + +L RL + V E P F+ I S+
Sbjct: 308 LANPALPEDILKEAVPGNIRRAEHFLAVLRRLVRFLDGRLETENVENEMPVAFVASIHSQ 367
Query: 245 PAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLA 304
I++K LRFC +RL
Sbjct: 368 AG--------------------------------------------IDQKMLRFCYDRLH 383
Query: 305 SLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDS 364
SL+ TLEIT+ +F + I ATL+ +YT+GF+II+EP+ ++ P + +PV+ C D+
Sbjct: 384 SLMLTLEITDTDEFMHIQTICDFATLIGTYTRGFSIIIEPYDERMPDIRDPVIQLSCHDA 443
Query: 365 SLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMVRENYAM 424
SLAI+PVF+RFQTVVITSGTLSP+D+YP++LNF PVI SF+M+L R C+ PMV +
Sbjct: 444 SLAIQPVFERFQTVVITSGTLSPIDLYPRLLNFNPVISRSFTMSLTRDCICPMVLTRGS- 502
Query: 425 GLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN 484
D LPV ++ M + G LLEM S + +YM+
Sbjct: 503 ----DQLPVSTKFD---------MRSDPGVVRNYGRLLLEMASAVPDGIVCFFVSYSYMD 549
Query: 485 A 485
Sbjct: 550 G 550
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 142/221 (64%), Gaps = 12/221 (5%)
Query: 636 NLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAG-ENIPVCDFYE 694
L RK L + Q S + RD VD C LT+S VRDR + ++ P+CDF+E
Sbjct: 106 GLSSRKNLCVHPQ-----ASAAAARDS--VDTACRRLTASWVRDRAASDPDSTPLCDFFE 158
Query: 695 KFDAVGREAPLA----PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDP 750
FD LA PGVY++ L+ +GR+ G+CPYFLARQ + +A +VVYSY YL+DP
Sbjct: 159 SFDRAAAAGDLASYMPPGVYTLADLRALGRDRGICPYFLARQMVKYANVVVYSYQYLIDP 218
Query: 751 KIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKE 810
K+A++VS+E+ + VVVFDEAHNIDNVC+++LSV I ++T+E A N++ + + K
Sbjct: 219 KVASIVSREMQKECVVVFDEAHNIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRFKA 278
Query: 811 ADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
D+ +LR EY RLV+GL + +D LANP LP++IL+
Sbjct: 279 TDANRLRAEYNRLVDGLAQRGNLPISDAWLANPALPEDILK 319
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 100/161 (62%), Gaps = 8/161 (4%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ++ L V FPY IYPEQ+AYM ELK+ALDA+GH LLEMP+GTGKT++L+SLI +Y
Sbjct: 1 MKFDLEGLTVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPTGTGKTSALISLITSYS 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIH--- 540
A P +L+YC+RTV E+EK + EL LF ++ ++ L LSSRKNLC+H
Sbjct: 61 LASPSRPLRLIYCTRTVHEMEKTLAELRLLF-AHLPAAASRSLLALGLSSRKNLCVHPQA 119
Query: 541 SEFETRD--DISVIRNYGQLLVDIACVVPDGV-VC-FFTSY 577
S RD D + R + D A PD +C FF S+
Sbjct: 120 SAAAARDSVDTACRRLTASWVRDRAASDPDSTPLCDFFESF 160
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ + L + + F+ R D V+RNYG+LL+++A VPDG+VCFF SY Y++
Sbjct: 492 CICP-MVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPDGIVCFFVSYSYMDG 550
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+V SW + GI+ ++ + KL+FIET D +++
Sbjct: 551 IVNSWNEMGILQDIMQHKLVFIETPDVVET 580
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 58/88 (65%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+MIFADKR++R DKRSKLP WI +L D NLST+ A+ +++ +LR+MAQ
Sbjct: 670 VIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIAREFLRRMAQ 729
Query: 909 PFTREDMLGVALLSLDQLLEKEHARAEE 936
P+ + G L ++ L+ A E
Sbjct: 730 PYDKTGSGGNKTLLTEEDLQNMAQDAME 757
>gi|116204809|ref|XP_001228215.1| hypothetical protein CHGG_10288 [Chaetomium globosum CBS 148.51]
gi|88176416|gb|EAQ83884.1| hypothetical protein CHGG_10288 [Chaetomium globosum CBS 148.51]
Length = 732
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/418 (45%), Positives = 258/418 (61%), Gaps = 83/418 (19%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G +VD RC SLT+ V+++ + GE++ VC +++
Sbjct: 103 VRREKSGNVVDARCRSLTAGFVKEKKEKGEDVEVCVYHD--------------------- 141
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ + +++YSYHYLLDPKIA VSK+L++ +VVFDEAHNID
Sbjct: 142 ------------------MQYCNVIIYSYHYLLDPKIAERVSKDLSKDCIVVFDEAHNID 183
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS I ++ +A Q LE + EM+++D KL++EY +LVEGLR A R+
Sbjct: 184 NVCIESLSTDITDDSLRRATRGAQNLENKINEMRDSDKQKLQDEYEKLVEGLRGADDGRQ 243
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D +ANP LPD++L+E VPGNIR AEHFV FL+RFIEYLKTR++V+QV+ E+P +FL
Sbjct: 244 EDSFMANPTLPDDLLKEAVPGNIRRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLS- 302
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
HLK TF IE+KPLRFCA
Sbjct: 303 ----------------------HLKEH------------TF---------IEKKPLRFCA 319
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+TN+ D+ L + ATLV++Y KGF +I+EPF VPNPVL+F
Sbjct: 320 ERLTSLVRTLELTNIEDYQPLQEVATFATLVATYEKGFLLILEPFESDTAEVPNPVLHFT 379
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +VVITSGT+SPL+MYPK+L+F V+ S+SMTLAR LPM+
Sbjct: 380 CLDAAIAIKPVFDRFSSVVITSGTMSPLEMYPKMLDFPTVVQESYSMTLARRSFLPMI 437
Score = 156 bits (394), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 115/197 (58%), Gaps = 39/197 (19%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G +VD RC SLT+ V+++ + GE++ VC +++
Sbjct: 102 SVRREKSGNVVDARCRSLTAGFVKEKKEKGEDVEVCVYHD-------------------- 141
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ + +++YSYHYLLDPKIA VSK+L++ +VVFDEAHNI
Sbjct: 142 -------------------MQYCNVIIYSYHYLLDPKIAERVSKDLSKDCIVVFDEAHNI 182
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS I ++ +A Q LE + EM+++D KL++EY +LVEGLR A R
Sbjct: 183 DNVCIESLSTDITDDSLRRATRGAQNLENKINEMRDSDKQKLQDEYEKLVEGLRGADDGR 242
Query: 835 ETDVVLANPVLPDEILQ 851
+ D +ANP LPD++L+
Sbjct: 243 QEDSFMANPTLPDDLLK 259
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 76/121 (62%), Gaps = 14/121 (11%)
Query: 447 YMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKV 506
YMV+LKK LDA G+C+LEMPSGTGKT +LLSLIVAY +P KL+YCSRT+ EIEK
Sbjct: 7 YMVDLKKTLDAGGNCVLEMPSGTGKTVTLLSLIVAYQQYYP-SHRKLIYCSRTMSEIEKA 65
Query: 507 VEELARLFDY---YIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIA 563
+ EL L + + H EE GL L+SRKNLC+H SV R +VD
Sbjct: 66 LVELKALMKFRTERLGHEEEFR--GLGLTSRKNLCLHP--------SVRREKSGNVVDAR 115
Query: 564 C 564
C
Sbjct: 116 C 116
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 69/111 (62%), Gaps = 8/111 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR++L
Sbjct: 578 ARL-EFLRETYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGLMVLADRRFQK--KRAQL 634
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
PKWI + L D NLST+ AV ++R+LR MAQPF +D G++ S+D L
Sbjct: 635 PKWINQALLDADVNLSTDMAVSSARRFLRTMAQPFRAKDQEGISTWSMDDL 685
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 53/74 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ + F+ R++ SV+RNYG LL + A + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 447 ISTSFQVRNEPSVVRNYGSLLTEFAKITPDGLVVFFPSYLYMESIISMWQGMGILDEVWK 506
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 507 YKLILVETPDAQET 520
>gi|226496439|ref|NP_001152321.1| DNA repair helicase UVH6 [Zea mays]
gi|195655087|gb|ACG47011.1| DNA repair helicase UVH6 [Zea mays]
gi|413917667|gb|AFW57599.1| DNA repair helicase UVH6 [Zea mays]
Length = 758
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/481 (41%), Positives = 281/481 (58%), Gaps = 63/481 (13%)
Query: 10 VDGRCHSLTSSSVRDRHKAG-ENIPVCDFYEKFDAVGREAPLA----PGVYSITKLKEMG 64
VD C LT+S VR++ + ++ P+C+FYE FD LA PGVY++ L+ +G
Sbjct: 128 VDTACRRLTASWVREKASSDPDSTPLCEFYETFDRAAAAGDLASFMPPGVYTLADLRALG 187
Query: 65 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 124
RE +CPYFLARQ + +A +VVYSY YLLDPK+A++VS+E+ + VVVFDEAHNIDNVC+
Sbjct: 188 RERRVCPYFLARQMVKYANVVVYSYQYLLDPKVASIVSREMQKECVVVFDEAHNIDNVCI 247
Query: 125 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVV 184
++LSV I ++T+E A N++ + + K D+ +LR EY RLV+GL + +D
Sbjct: 248 EALSVSIRKQTLEGAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLAQRGNLPISDAW 307
Query: 185 LANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSK 244
LANP LPD+IL+E VPGNIR AEHF+ L+R + +L RL + V E P +F+ I S+
Sbjct: 308 LANPSLPDDILKEAVPGNIRRAEHFLAVLRRLVRFLDGRLETENVENEMPVSFVASIHSQ 367
Query: 245 PAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLA 304
I++K LRFC +RL
Sbjct: 368 AG--------------------------------------------IDQKMLRFCYDRLH 383
Query: 305 SLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDS 364
SL+ TLEIT+ +F + I ATL+ +YT+GF+II+EP+ D+ P + +PV+ C D+
Sbjct: 384 SLMMTLEITDTDEFMHIQTICDFATLIGTYTRGFSIIIEPYDDRMPDIRDPVIQLSCHDA 443
Query: 365 SLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMVRENYAM 424
SLAI+PVFDRF+TVVITSGTLSP+D+YP++LNF PVI SF+M+L R C+ PMV +
Sbjct: 444 SLAIRPVFDRFETVVITSGTLSPIDLYPRLLNFNPVISRSFTMSLTRDCICPMVLTRGS- 502
Query: 425 GLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN 484
D LPV ++ M + G LLEM S + +YM+
Sbjct: 503 ----DQLPVSTKFD---------MRSDPGVVRNYGRLLLEMASAVPDGIVCFFVSYSYMD 549
Query: 485 A 485
Sbjct: 550 G 550
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 141/221 (63%), Gaps = 12/221 (5%)
Query: 636 NLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAG-ENIPVCDFYE 694
L RK L I Q S + RD VD C LT+S VR++ + ++ P+C+FYE
Sbjct: 106 GLSSRKNLCIHPQ-----ASAAAARDS--VDTACRRLTASWVREKASSDPDSTPLCEFYE 158
Query: 695 KFDAVGREAPLA----PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDP 750
FD LA PGVY++ L+ +GRE +CPYFLARQ + +A +VVYSY YLLDP
Sbjct: 159 TFDRAAAAGDLASFMPPGVYTLADLRALGRERRVCPYFLARQMVKYANVVVYSYQYLLDP 218
Query: 751 KIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKE 810
K+A++VS+E+ + VVVFDEAHNIDNVC+++LSV I ++T+E A N++ + + K
Sbjct: 219 KVASIVSREMQKECVVVFDEAHNIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRFKA 278
Query: 811 ADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
D+ +LR EY RLV+GL + +D LANP LPD+IL+
Sbjct: 279 TDANRLRAEYNRLVDGLAQRGNLPISDAWLANPSLPDDILK 319
Score = 132 bits (332), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 85/119 (71%), Gaps = 1/119 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M +D LPV FPY IYPEQ+AYM ELK+ALDA+GH LLEMP+GTGKT +L+SLI +Y
Sbjct: 1 MRFDLDGLPVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPTGTGKTAALISLITSYS 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
A+P +L+YC+RTV E+EK + EL LF ++ ++ L LSSRKNLCIH +
Sbjct: 61 LANPARPLRLIYCTRTVHEMEKTLAELRLLF-AHLPPAASRSLLALGLSSRKNLCIHPQ 118
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ + L + + F+ R D V+RNYG+LL+++A VPDG+VCFF SY Y++
Sbjct: 492 CICP-MVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPDGIVCFFVSYSYMDG 550
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+V SW++ GI+ ++ + KL+FIET D +++
Sbjct: 551 IVNSWHEMGILQDIMQHKLVFIETPDVVET 580
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 56/81 (69%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+MIFADKR++R DKRSKLP WI +L D NLST+ A+ +++ +LR+MAQ
Sbjct: 670 VIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIAREFLRRMAQ 729
Query: 909 PFTREDMLGVALLSLDQLLEK 929
P+ + G L ++ LE
Sbjct: 730 PYDKAGSGGKKTLLTEEDLEN 750
>gi|15218736|ref|NP_171818.1| DNA repair helicase UVH6 [Arabidopsis thaliana]
gi|30678494|ref|NP_849584.1| DNA repair helicase UVH6 [Arabidopsis thaliana]
gi|57013122|sp|Q8W4M7.1|ERCC2_ARATH RecName: Full=DNA repair helicase UVH6; AltName: Full=ERCC2
homolog; AltName: Full=RAD3 homolog; Short=AtUVH6;
Short=AtXPD; AltName: Full=UV hypersensitive protein 6;
AltName: Full=XPD homolog
gi|17064790|gb|AAL32549.1| Strong similarity to nucleotide excision repair protein
[Arabidopsis thaliana]
gi|20258776|gb|AAM13910.1| putative DNA repair protein [Arabidopsis thaliana]
gi|22651570|gb|AAM10793.1| DNA repair/transcription factor protein [Arabidopsis thaliana]
gi|34098809|gb|AAQ56787.1| At1g03190 [Arabidopsis thaliana]
gi|332189421|gb|AEE27542.1| DNA repair helicase UVH6 [Arabidopsis thaliana]
gi|332189422|gb|AEE27543.1| DNA repair helicase UVH6 [Arabidopsis thaliana]
Length = 758
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/409 (44%), Positives = 249/409 (60%), Gaps = 44/409 (10%)
Query: 10 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGL 69
VD C T+S VR N+ +CDF+E ++ A L PGVY++ L+ G+ G
Sbjct: 130 VDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDLRAFGKNRGW 189
Query: 70 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 129
CPYFLAR I A ++VYSY YLLDPK+A +SKEL + SVVVFDEAHNIDNVC+++LSV
Sbjct: 190 CPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNIDNVCIEALSV 249
Query: 130 RINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPV 189
+ R T+E A N+ + + K D+ +LR EY RLVEGL D LANP
Sbjct: 250 SVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDLSGGDQWLANPA 309
Query: 190 LPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSM 249
LP +IL+E VPGNIR AEHFV L+R ++YL RL + V +ESP +F+ ++S+
Sbjct: 310 LPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFVSSLNSQAG--- 366
Query: 250 ISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRT 309
IE+K L+FC +RL SL+ T
Sbjct: 367 -----------------------------------------IEQKTLKFCYDRLQSLMLT 385
Query: 310 LEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIK 369
LEIT+ +F + + ATLV +Y +GF+II+EP+ ++ P +P+P+L C D+SLAIK
Sbjct: 386 LEITDTDEFLPIQTVCDFATLVGTYARGFSIIIEPYDERMPHIPDPILQLSCHDASLAIK 445
Query: 370 PVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
PVFDRFQ+VVITSGTLSP+D+YP++LNF PV+ SF M++ R C+ PMV
Sbjct: 446 PVFDRFQSVVITSGTLSPIDLYPRLLNFTPVVSRSFKMSMTRDCICPMV 494
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/187 (47%), Positives = 116/187 (62%)
Query: 665 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGL 724
VD C T+S VR N+ +CDF+E ++ A L PGVY++ L+ G+ G
Sbjct: 130 VDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDLRAFGKNRGW 189
Query: 725 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 784
CPYFLAR I A ++VYSY YLLDPK+A +SKEL + SVVVFDEAHNIDNVC+++LSV
Sbjct: 190 CPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNIDNVCIEALSV 249
Query: 785 RINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPV 844
+ R T+E A N+ + + K D+ +LR EY RLVEGL D LANP
Sbjct: 250 SVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDLSGGDQWLANPA 309
Query: 845 LPDEILQ 851
LP +IL+
Sbjct: 310 LPHDILK 316
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 94/130 (72%), Gaps = 4/130 (3%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M I+D+ V+FPY+ IYPEQY YMVELK+ALDAKGHCLLEMP+GTGKT +LLSLI +Y
Sbjct: 1 MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+ P KL+YC+RTV E+EK + EL L DY ++H + + L LSSRKNLC++++
Sbjct: 61 LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTK 120
Query: 543 F---ETRDDI 549
E RD +
Sbjct: 121 VLAAENRDSV 130
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ + L + + F+ R D V+RNYG+LLV++ +VPDGVVCFF SY Y++
Sbjct: 489 CICP-MVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFVSYSYMDG 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
++A+W + GI+ + ++KL+FIETQD +++
Sbjct: 548 IIATWNETGILKEIMQQKLVFIETQDVVET 577
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 57/81 (70%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+MIFADKR++R DKRSKLP WI +L D NLST+ A+ +++ +LR+MAQ
Sbjct: 667 VIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIAREFLRKMAQ 726
Query: 909 PFTREDMLGVALLSLDQLLEK 929
P+ + +G L + LEK
Sbjct: 727 PYDKAGTMGRKTLLTQEDLEK 747
>gi|6503086|gb|AAF14582.1|AF188623_1 nucleotide excision repair protein XP-D homolog [Arabidopsis
thaliana]
Length = 758
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/409 (44%), Positives = 249/409 (60%), Gaps = 44/409 (10%)
Query: 10 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGL 69
VD C T+S VR N+ +CDF+E ++ A L PGVY++ L+ G+ G
Sbjct: 130 VDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDLRAFGKNRGW 189
Query: 70 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 129
CPYFLAR I A ++VYSY YLLDPK+A +SKEL + SVVVFDEAHNIDNVC+++LSV
Sbjct: 190 CPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNIDNVCIEALSV 249
Query: 130 RINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPV 189
+ R T+E A N+ + + K D+ +LR EY RLVEGL D LANP
Sbjct: 250 SVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDLSGGDQWLANPA 309
Query: 190 LPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSM 249
LP +IL+E VPGNIR AEHFV L+R ++YL RL + V +ESP +F+ ++S+
Sbjct: 310 LPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFVSSLNSQAG--- 366
Query: 250 ISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRT 309
IE+K L+FC +RL SL+ T
Sbjct: 367 -----------------------------------------IEQKTLKFCYDRLQSLMLT 385
Query: 310 LEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIK 369
LEIT+ +F + + ATLV +Y +GF+II+EP+ ++ P +P+P+L C D+SLAIK
Sbjct: 386 LEITDTDEFLPIQTVCDFATLVGTYARGFSIIIEPYDERMPHIPDPILQLSCHDASLAIK 445
Query: 370 PVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
PVFDRFQ+VVITSGTLSP+D+YP++LNF PV+ SF M++ R C+ PMV
Sbjct: 446 PVFDRFQSVVITSGTLSPIDLYPRLLNFTPVVSRSFKMSMTRDCICPMV 494
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/187 (47%), Positives = 116/187 (62%)
Query: 665 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGL 724
VD C T+S VR N+ +CDF+E ++ A L PGVY++ L+ G+ G
Sbjct: 130 VDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDLRAFGKNRGW 189
Query: 725 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 784
CPYFLAR I A ++VYSY YLLDPK+A +SKEL + SVVVFDEAHNIDNVC+++LSV
Sbjct: 190 CPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNIDNVCIEALSV 249
Query: 785 RINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPV 844
+ R T+E A N+ + + K D+ +LR EY RLVEGL D LANP
Sbjct: 250 SVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDLSGGDQWLANPA 309
Query: 845 LPDEILQ 851
LP +IL+
Sbjct: 310 LPHDILK 316
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 94/130 (72%), Gaps = 4/130 (3%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M I+D+ V+FPY+ IYPEQY YMVELK+ALDAKGHCLLEMP+GTGKT +LLSLI +Y
Sbjct: 1 MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+ P KL+YC+RTV E+EK + EL L DY ++H + + L LSSRKNLC++++
Sbjct: 61 LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTK 120
Query: 543 F---ETRDDI 549
E RD +
Sbjct: 121 VLAAENRDSV 130
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ + L + + F+ R D V+RNYG+LLV++ +VPDGVVCFF SY Y++
Sbjct: 489 CICP-MVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFVSYSYMDG 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
++A+W + GI++ + ++KL+FIETQD +++
Sbjct: 548 IIATWNETGILEEIMQQKLVFIETQDVVET 577
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 57/81 (70%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+MIFADKR++R DKRSKLP WI +L D NLST+ A+ +++ +LR+MAQ
Sbjct: 667 VIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIAREFLRKMAQ 726
Query: 909 PFTREDMLGVALLSLDQLLEK 929
P+ + +G L + LEK
Sbjct: 727 PYDKAGTMGRKTLLTQEDLEK 747
>gi|145353086|ref|XP_001420860.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581095|gb|ABO99153.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 788
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/427 (44%), Positives = 264/427 (61%), Gaps = 64/427 (14%)
Query: 10 VDGRCHSLTSSSVRDRH------KAGENIPV--------CDFYEKFDAVGREAPLAPGVY 55
VDG+C LT+S VR++ A EN V C+F+E F++ G +A L PGVY
Sbjct: 130 VDGKCRRLTASWVREKRLEREARGASENENVEDGGEGNCCEFFEDFESAGEKAVLPPGVY 189
Query: 56 SITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDE 115
++ L+ GR CPYFLAR I A +VVY+Y Y+LDPK+A++VS L + +VVFDE
Sbjct: 190 TLHDLRAFGRTKKWCPYFLARNMISFANVVVYNYQYMLDPKVASLVSSSLEKECIVVFDE 249
Query: 116 AHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRD- 174
AHNIDNVC+++LSV + ++T+E A +I +L + K+ D +LR+EY RLV GL
Sbjct: 250 AHNIDNVCIEALSVNLRQQTLENAGRSITSLNTRIDRAKQTDERRLRQEYERLVNGLAQQ 309
Query: 175 ---AQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQ 231
A+ E VL NP++PD+IL+E VPGNIR AEHFV LKRF+EYL RLR QV Q
Sbjct: 310 GVLARGGGED--VLMNPIIPDDILREAVPGNIRRAEHFVAVLKRFVEYLNMRLRSTQVEQ 367
Query: 232 ESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCI 291
E+P FL+ ++ I
Sbjct: 368 ETPTAFLQHCAANAG--------------------------------------------I 383
Query: 292 ERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPT 351
+ K L+FC +RL SLL+TLE+ ++ +F++L ++ + A LV +Y+ GFA+I+EP+ ++ P
Sbjct: 384 DGKTLKFCYDRLTSLLKTLEVVDMDEFNALSLVANFAALVGTYSNGFALILEPYDERYPN 443
Query: 352 VPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLAR 411
+P+PVL CLD+SLAIKPVF+RFQ+V ITSGTLSP+D+YPK+L F PV + S +MTL R
Sbjct: 444 IPDPVLQLACLDASLAIKPVFERFQSVFITSGTLSPIDLYPKLLGFNPVSVRSLAMTLTR 503
Query: 412 PCLLPMV 418
CL PMV
Sbjct: 504 DCLCPMV 510
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 129/205 (62%), Gaps = 20/205 (9%)
Query: 665 VDGRCHSLTSSSVRDRH------KAGENIPV--------CDFYEKFDAVGREAPLAPGVY 710
VDG+C LT+S VR++ A EN V C+F+E F++ G +A L PGVY
Sbjct: 130 VDGKCRRLTASWVREKRLEREARGASENENVEDGGEGNCCEFFEDFESAGEKAVLPPGVY 189
Query: 711 SITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDE 770
++ L+ GR CPYFLAR I A +VVY+Y Y+LDPK+A++VS L + +VVFDE
Sbjct: 190 TLHDLRAFGRTKKWCPYFLARNMISFANVVVYNYQYMLDPKVASLVSSSLEKECIVVFDE 249
Query: 771 AHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRD- 829
AHNIDNVC+++LSV + ++T+E A +I +L + K+ D +LR+EY RLV GL
Sbjct: 250 AHNIDNVCIEALSVNLRQQTLENAGRSITSLNTRIDRAKQTDERRLRQEYERLVNGLAQQ 309
Query: 830 ---AQSARETDVVLANPVLPDEILQ 851
A+ E VL NP++PD+IL+
Sbjct: 310 GVLARGGGED--VLMNPIIPDDILR 332
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/120 (51%), Positives = 85/120 (70%), Gaps = 5/120 (4%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ++ L VFFPY IYPEQ A M E K++LDA+GH +EMP+GTGKT ++LSL V+Y
Sbjct: 1 MDFNLEGLRVFFPYPQIYPEQLAMMTEFKRSLDARGHGAIEMPTGTGKTITVLSLCVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYI--KHNEEI-NMTGLVLSSRKNLCIH 540
AHP + KL+YC+RTVPE+EKV+ E R + +I + E++ M L LSSRKN+C++
Sbjct: 61 IAHP-ECGKLIYCTRTVPEMEKVLAE-CRTLERFIAARAGEDVAAMLALGLSSRKNMCVN 118
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 54/70 (77%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
F+ RDD +VI+NYG++L+ +A VPDG+V FF SY Y+E++V+ W++ GI+ + + KL+
Sbjct: 524 FDMRDDPNVIQNYGRILIGLAQTVPDGIVAFFVSYSYMENIVSKWHETGILREIMQHKLV 583
Query: 644 FIETQDALDS 653
FIET D +++
Sbjct: 584 FIETTDVVET 593
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 64/99 (64%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ +E+D + + V +++ K DYG+M+FADKR+ DKR KL
Sbjct: 651 ARL-EYLRETFQIKESDFLAFDAVRQAAQCVGRVIRSKKDYGLMVFADKRYNSQDKRGKL 709
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P WI +L + + NLST+ A+Q+++ ++R M+QPF+ ++
Sbjct: 710 PGWITTHLREEVLNLSTDMAMQVARTFMRSMSQPFSHDE 748
>gi|242089495|ref|XP_002440580.1| hypothetical protein SORBIDRAFT_09g003450 [Sorghum bicolor]
gi|241945865|gb|EES19010.1| hypothetical protein SORBIDRAFT_09g003450 [Sorghum bicolor]
Length = 758
Score = 374 bits (961), Expect = e-100, Method: Compositional matrix adjust.
Identities = 200/481 (41%), Positives = 281/481 (58%), Gaps = 63/481 (13%)
Query: 10 VDGRCHSLTSSSVRDRHKAG-ENIPVCDFYEKFDAVGREAPLA----PGVYSITKLKEMG 64
VD C LT+S VR++ + E+ P+C+FYE FD LA PGVY++ L+ +G
Sbjct: 128 VDTACRRLTASWVREKAASDPESTPLCEFYETFDRAAAAGDLASFMPPGVYTLADLRALG 187
Query: 65 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 124
RE +CPYFLARQ + +A +VVYSY YLLDPK+A++VS+E+ + VVVFDEAHNIDNVC+
Sbjct: 188 RERRVCPYFLARQMVKYANVVVYSYQYLLDPKVASIVSREMQKECVVVFDEAHNIDNVCI 247
Query: 125 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVV 184
++LSV I ++T+E A N++ + + K D+ +LR EY RLV+GL + +D
Sbjct: 248 EALSVSIRKQTLEGAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLAQRGNLPISDAW 307
Query: 185 LANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSK 244
LANP LPD+IL+E VPGNIR AEHF+ L+R + +L RL + V E P +F+ I S+
Sbjct: 308 LANPALPDDILKEAVPGNIRRAEHFLAVLRRLVRFLDGRLETENVENEMPVSFVASIHSQ 367
Query: 245 PAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLA 304
I++K LRFC +RL
Sbjct: 368 AG--------------------------------------------IDQKMLRFCYDRLH 383
Query: 305 SLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDS 364
SL+ TLEIT+ +F + I ATL+ +YT+GF+II+EP+ ++ P + +PV+ C D+
Sbjct: 384 SLMMTLEITDTDEFMHIQTICDFATLIGTYTRGFSIIIEPYDERMPDIRDPVIQLSCHDA 443
Query: 365 SLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMVRENYAM 424
SLAI+PVFDRF+TVVITSGTLSP+D+YP++LNF PVI SF+M+L R C+ PMV +
Sbjct: 444 SLAIRPVFDRFETVVITSGTLSPIDLYPRLLNFNPVISRSFTMSLTRDCICPMVLTRGS- 502
Query: 425 GLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN 484
D LPV ++ M + G LLEM S + +YM+
Sbjct: 503 ----DQLPVSTKFD---------MRSDPGVVRNYGRLLLEMASAVPDGIVCFFVSYSYMD 549
Query: 485 A 485
Sbjct: 550 G 550
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 141/221 (63%), Gaps = 12/221 (5%)
Query: 636 NLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAG-ENIPVCDFYE 694
L RK L + Q S + RD VD C LT+S VR++ + E+ P+C+FYE
Sbjct: 106 GLSSRKNLCVHPQ-----ASAAAARDS--VDTACRRLTASWVREKAASDPESTPLCEFYE 158
Query: 695 KFDAVGREAPLA----PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDP 750
FD LA PGVY++ L+ +GRE +CPYFLARQ + +A +VVYSY YLLDP
Sbjct: 159 TFDRAAAAGDLASFMPPGVYTLADLRALGRERRVCPYFLARQMVKYANVVVYSYQYLLDP 218
Query: 751 KIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKE 810
K+A++VS+E+ + VVVFDEAHNIDNVC+++LSV I ++T+E A N++ + + K
Sbjct: 219 KVASIVSREMQKECVVVFDEAHNIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRFKA 278
Query: 811 ADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
D+ +LR EY RLV+GL + +D LANP LPD+IL+
Sbjct: 279 TDANRLRAEYNRLVDGLAQRGNLPISDAWLANPALPDDILK 319
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/119 (54%), Positives = 85/119 (71%), Gaps = 1/119 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M +D LPV FPY IYPEQ+AYM ELK+ALDA+GH LLEMP+GTGKT +L+SLI +Y
Sbjct: 1 MRFDLDGLPVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPTGTGKTAALISLITSYS 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
A+P +L+YC+RTV E+EK + EL LF ++ ++ L LSSRKNLC+H +
Sbjct: 61 LANPSRPLRLIYCTRTVHEMEKTLAELRLLF-AHLPPPAARSLLALGLSSRKNLCVHPQ 118
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ + L + + F+ R D V+RNYG+LL+++A VPDG+VCFF SY Y++
Sbjct: 492 CICP-MVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPDGIVCFFVSYSYMDG 550
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+V SW++ GI+ ++ + KL+FIET D +++
Sbjct: 551 IVNSWHEMGILQDIMQHKLVFIETPDVVET 580
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 56/81 (69%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+MIFADKR++R DKRSKLP WI +L D NLST+ A+ +++ +LR+MAQ
Sbjct: 670 VIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIAREFLRRMAQ 729
Query: 909 PFTREDMLGVALLSLDQLLEK 929
P+ + G L ++ L+
Sbjct: 730 PYDKTGSGGKKTLLTEEDLQN 750
>gi|301097762|ref|XP_002897975.1| TFIIH basal transcription factor complex helicase subunit
[Phytophthora infestans T30-4]
gi|262106420|gb|EEY64472.1| TFIIH basal transcription factor complex helicase subunit
[Phytophthora infestans T30-4]
Length = 763
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/429 (44%), Positives = 266/429 (62%), Gaps = 71/429 (16%)
Query: 6 DGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDA-VGREAPLAPGVYSITKLKEMG 64
DG+ VDG+C +T+S V C FYE +DA + L PGVYS+ LKE+G
Sbjct: 125 DGEDVDGQCRKMTASWVE----------TCSFYENYDARKSNDTVLPPGVYSVDDLKELG 174
Query: 65 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 124
+ G CPYFL R + A +VVY+Y Y+LDPK++ +VS+ + S+VVFDEAHNIDNVC+
Sbjct: 175 VKKGWCPYFLTRYVVTFADVVVYNYQYMLDPKVSQLVSRSFEKESIVVFDEAHNIDNVCI 234
Query: 125 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA------ 178
++LSV ++RR++++A N+ TL G + ++K+AD ++L EY RLVEGLR + +
Sbjct: 235 EALSVDLDRRSLDRASRNLTTLSGQVNKLKQADKSRLDAEYRRLVEGLRSSNAVVAPSYT 294
Query: 179 ---------RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQV 229
D+++ANPVLPD++L E +PGNIR AEHFV F++R IEYL+ R+RV+QV
Sbjct: 295 DPATNQAIDTSNDIMIANPVLPDDVLDEAIPGNIRRAEHFVAFMRRLIEYLRQRIRVRQV 354
Query: 230 VQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKV 289
E+P FL HL +
Sbjct: 355 ESETPQAFL-----------------------HHLH---------------------QAI 370
Query: 290 CIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKA 349
+E KP++FC RL SLLRTLE+TNL +++SL + ATLV++Y +GF +I+EPF D A
Sbjct: 371 NMEIKPMKFCYTRLNSLLRTLEVTNLEEYNSLTDVADFATLVATYAEGFMLIIEPF-DSA 429
Query: 350 PTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTL 409
V +PVL CLD+SLAI+PVF+RF +VVITSGTLSP+D+YP++LNF PVI S M++
Sbjct: 430 SGVHDPVLQLSCLDASLAIRPVFERFSSVVITSGTLSPIDLYPRLLNFNPVIRESLPMSV 489
Query: 410 ARPCLLPMV 418
R + P+V
Sbjct: 490 YRSSICPLV 498
Score = 186 bits (472), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 90/206 (43%), Positives = 132/206 (64%), Gaps = 26/206 (12%)
Query: 661 DGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDA-VGREAPLAPGVYSITKLKEMG 719
DG+ VDG+C +T+S V C FYE +DA + L PGVYS+ LKE+G
Sbjct: 125 DGEDVDGQCRKMTASWVE----------TCSFYENYDARKSNDTVLPPGVYSVDDLKELG 174
Query: 720 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 779
+ G CPYFL R + A +VVY+Y Y+LDPK++ +VS+ + S+VVFDEAHNIDNVC+
Sbjct: 175 VKKGWCPYFLTRYVVTFADVVVYNYQYMLDPKVSQLVSRSFEKESIVVFDEAHNIDNVCI 234
Query: 780 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA------ 833
++LSV ++RR++++A N+ TL G + ++K+AD ++L EY RLVEGLR + +
Sbjct: 235 EALSVDLDRRSLDRASRNLTTLSGQVNKLKQADKSRLDAEYRRLVEGLRSSNAVVAPSYT 294
Query: 834 ---------RETDVVLANPVLPDEIL 850
D+++ANPVLPD++L
Sbjct: 295 DPATNQAIDTSNDIMIANPVLPDDVL 320
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/118 (55%), Positives = 87/118 (73%), Gaps = 2/118 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + ID L V FPYE +Y EQ YM ELK+ALDA+GHC+LEMP+GTGKT SLLSL++AY
Sbjct: 1 MKVDIDGLEVVFPYERMYSEQLQYMRELKRALDAQGHCMLEMPTGTGKTVSLLSLVLAYK 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK-HNEEINMTGLVLSSRKNLCIH 540
AHP KL+YC+RTVPE+ K VEE+ +L Y + ++ +T + LSSR+N+C+H
Sbjct: 61 AAHP-TAGKLVYCTRTVPEMAKCVEEIKKLIKYREHYYGDKAQVTAVCLSSRRNMCVH 117
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 52/70 (74%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
F+ RDD+SV+RNYG LL+++A PDG+VCFF SYLY+E ++ W G++ + KLL
Sbjct: 512 FDLRDDLSVVRNYGTLLLEMAACTPDGMVCFFPSYLYMEKIIGQWDSLGVLKRVLSSKLL 571
Query: 644 FIETQDALDS 653
FIET+D +++
Sbjct: 572 FIETKDIVET 581
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 1/148 (0%)
Query: 791 IEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEIL 850
++ G L G + +++ + R EY R +R+ D + +L
Sbjct: 614 FDRHYGRAVILFGIPFQYTLSNTLRARLEYLRYTHQIREGDFL-TFDALRQAAQCAGRVL 672
Query: 851 QGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPF 910
+ KTDYG++IFAD R+ R+DKR+KLP WI ++L ++ NLS + AV ++K++L MAQP
Sbjct: 673 RSKTDYGLVIFADSRYNRADKRTKLPPWILQFLVNSHLNLSVDMAVFMAKKYLSLMAQPV 732
Query: 911 TREDMLGVALLSLDQLLEKEHARAEEEE 938
+ LL D + + +E+E
Sbjct: 733 DESTSVNSILLDADGVAKWLGKHPKEDE 760
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 42/56 (75%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIR 594
+ ++F+ RDD+SV+RNYG LL+++A PDG+VCFF SYLY+E + D + V++
Sbjct: 508 VSTKFDLRDDLSVVRNYGTLLLEMAACTPDGMVCFFPSYLYMEKIIGQWDSLGVLK 563
>gi|226289058|gb|EEH44570.1| DNA repair helicase RAD3 [Paracoccidioides brasiliensis Pb18]
Length = 791
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/418 (45%), Positives = 256/418 (61%), Gaps = 83/418 (19%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E+ G IVD RC SLT+ V+++ + GE++ +C ++E
Sbjct: 168 VKREKSGTIVDARCRSLTAGFVKEKKERGEDVELCIYHE--------------------- 206
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ C +++YSYHYLLDPKIA VS+EL++ S+VVFDEAHNID
Sbjct: 207 ------MPFC------------NVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNID 248
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++SLS+ + ++ KA LE + EMK +D+ KL+ EY +LVEGLR+A AR+
Sbjct: 249 NVCIESLSIDLTEDSLRKASRGANNLERRIDEMKSSDAEKLQNEYQKLVEGLREADEARQ 308
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ ++ANP LPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V + E+P +FL
Sbjct: 309 EEQLMANPALPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPPSFL-- 366
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
LKD++ IERKPLRFCA
Sbjct: 367 ---------------------------------------AHLKDLT---FIERKPLRFCA 384
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SL+RTLE+ NL D+ L + ATL ++Y KGF +I+EPF TVPNP+L+F
Sbjct: 385 ERLTSLVRTLELMNLEDYQPLQQVAAFATLAATYEKGFLLILEPFESDTATVPNPILHFT 444
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+++AIKPVFDRF +V+ITSGTLSPL+MYPK+L F V+ S+SMTLAR LPM+
Sbjct: 445 CLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLGFTTVLQESYSMTLARRSFLPMI 502
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 118/197 (59%), Gaps = 39/197 (19%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV +E+ G IVD RC SLT+ V+++ + GE++ +C ++E
Sbjct: 167 SVKREKSGTIVDARCRSLTAGFVKEKKERGEDVELCIYHE-------------------- 206
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
+ C +++YSYHYLLDPKIA VS+EL++ S+VVFDEAHNI
Sbjct: 207 -------MPFC------------NVIIYSYHYLLDPKIAERVSQELSKDSIVVFDEAHNI 247
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++SLS+ + ++ KA LE + EMK +D+ KL+ EY +LVEGLR+A AR
Sbjct: 248 DNVCIESLSIDLTEDSLRKASRGANNLERRIDEMKSSDAEKLQNEYQKLVEGLREADEAR 307
Query: 835 ETDVVLANPVLPDEILQ 851
+ + ++ANP LPD++L+
Sbjct: 308 QEEQLMANPALPDDLLK 324
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 86/136 (63%), Gaps = 10/136 (7%)
Query: 430 DLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLD 489
DLPV FPY IYPEQYAYM +LKK LD GHC+LEMPSGTGKT SLLSLI+AY P +
Sbjct: 55 DLPVLFPYPRIYPEQYAYMCDLKKTLDTGGHCVLEMPSGTGKTVSLLSLIIAYQQHKP-E 113
Query: 490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSEFETRDD 548
KL+YCSRT+ EIEK + EL L Y + + GL L+SRKNLC+H
Sbjct: 114 QRKLIYCSRTMSEIEKALAELKALMKYRAQQLGYTEDFRGLGLTSRKNLCLHP------- 166
Query: 549 ISVIRNYGQLLVDIAC 564
SV R +VD C
Sbjct: 167 -SVKREKSGTIVDARC 181
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 76/126 (60%), Gaps = 9/126 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF + KR++L
Sbjct: 628 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFQK--KRAQL 684
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + + ++ TNLST+ A+ +K +LR MAQPF +D G++ S+ LE+ +
Sbjct: 685 PKWISQAMLESETNLSTDMAMATAKSFLRTMAQPFKSKDQEGISTWSIAD-LERHVKKQR 743
Query: 936 EEEVPR 941
EEE R
Sbjct: 744 EEESKR 749
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 37/49 (75%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW 628
+ S F+ R+D V+RNYG LL++ + + PDG+V FF SYLY+ES+++ W
Sbjct: 512 ISSSFQIRNDPGVVRNYGNLLLEFSRITPDGIVVFFPSYLYMESIISMW 560
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
I S F+ R+D V+RNYG LL++ + + PDG+V FF SYLY+ES+
Sbjct: 512 ISSSFQIRNDPGVVRNYGNLLLEFSRITPDGIVVFFPSYLYMESI 556
>gi|297843126|ref|XP_002889444.1| hypothetical protein ARALYDRAFT_470299 [Arabidopsis lyrata subsp.
lyrata]
gi|297335286|gb|EFH65703.1| hypothetical protein ARALYDRAFT_470299 [Arabidopsis lyrata subsp.
lyrata]
Length = 758
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/417 (43%), Positives = 255/417 (61%), Gaps = 46/417 (11%)
Query: 2 SKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLK 61
++ RD VD C T+S VR N+ +CD++E ++ A L PGVY++ L+
Sbjct: 124 AENRDS--VDAACRKRTASWVRALSTENPNVELCDYFENYEKAADNALLPPGVYTLEDLR 181
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121
G+ G CPYFLAR + A ++VYSY YLLDPK+A ++SKEL + SVVVFDEAHNIDN
Sbjct: 182 AFGKNRGWCPYFLARHMVQFANVIVYSYQYLLDPKVAGIISKELQKESVVVFDEAHNIDN 241
Query: 122 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARET 181
VC+++LSV + R T+E A N+ + + K D+ +LR EY RLVEGL +
Sbjct: 242 VCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDLSGS 301
Query: 182 DVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDI 241
D LANP LP +IL+E VPGNIR AEHFV L+R ++YL RL + V +ESP +F+ +
Sbjct: 302 DQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFVSSL 361
Query: 242 SSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAE 301
+S+ IE+K L+FC +
Sbjct: 362 NSQAG--------------------------------------------IEQKTLKFCYD 377
Query: 302 RLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCC 361
RL SL+ TLEIT+ +F + + ATLV +Y +GF+II+EP+ ++ P +P+P+L C
Sbjct: 378 RLQSLMLTLEITDTDEFLPIQTVCDFATLVGTYARGFSIIIEPYDERMPHIPDPILQLSC 437
Query: 362 LDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
D+SLAIKPVFDRFQ+VVITSGTLSP+D+YP++L+F PV+ SF M++ R C+ PMV
Sbjct: 438 HDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLSFTPVVSRSFKMSMTRDCICPMV 494
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/195 (45%), Positives = 122/195 (62%), Gaps = 2/195 (1%)
Query: 657 SKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLK 716
++ RD VD C T+S VR N+ +CD++E ++ A L PGVY++ L+
Sbjct: 124 AENRDS--VDAACRKRTASWVRALSTENPNVELCDYFENYEKAADNALLPPGVYTLEDLR 181
Query: 717 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 776
G+ G CPYFLAR + A ++VYSY YLLDPK+A ++SKEL + SVVVFDEAHNIDN
Sbjct: 182 AFGKNRGWCPYFLARHMVQFANVIVYSYQYLLDPKVAGIISKELQKESVVVFDEAHNIDN 241
Query: 777 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARET 836
VC+++LSV + R T+E A N+ + + K D+ +LR EY RLVEGL +
Sbjct: 242 VCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDLSGS 301
Query: 837 DVVLANPVLPDEILQ 851
D LANP LP +IL+
Sbjct: 302 DQWLANPALPHDILK 316
Score = 143 bits (361), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/130 (54%), Positives = 94/130 (72%), Gaps = 4/130 (3%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M I+D+ V+FPY+ IYPEQY YMVELK+ALDAKGHCLLEMP+GTGKT +LLSLI +Y
Sbjct: 1 MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+ P KL+YC+RTV E+EK + EL L DY ++H + + + LSSRKNLC++++
Sbjct: 61 LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGAQAMILAIGLSSRKNLCVNTK 120
Query: 543 F---ETRDDI 549
E RD +
Sbjct: 121 VLAAENRDSV 130
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ + L + + F+ R D V+RNYG+LLV++ +VPDGVVCFF SY Y++
Sbjct: 489 CICP-MVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFVSYSYMDG 547
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
++A+W + GI+ + ++KL+FIETQD +++
Sbjct: 548 IIATWNETGILKEIMQQKLVFIETQDVVET 577
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 57/81 (70%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+MIFADKR++R DKRSKLP WI +L D NLST+ A+ +++ +LR+MAQ
Sbjct: 667 VIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIAREFLRKMAQ 726
Query: 909 PFTREDMLGVALLSLDQLLEK 929
P+ + +G L + LEK
Sbjct: 727 PYDKAGTMGRKTLLTQEDLEK 747
>gi|326508038|dbj|BAJ86762.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 758
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/423 (44%), Positives = 265/423 (62%), Gaps = 51/423 (12%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAG-ENIPVCDFYEKFDAVGREAPLA----PGVY 55
S RD VD C LT+S VRD+ + E+ P+C+F+E FD L+ PGVY
Sbjct: 121 ASAARDS--VDTACRRLTASWVRDKAASDPESTPLCEFFESFDRAAAAGDLSSFMPPGVY 178
Query: 56 SITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDE 115
++ L+ +GRE +CPYFLARQ + +A +VVYSY YLLDPK+A++VS+E+ + VVVFDE
Sbjct: 179 TLADLRSLGRERRICPYFLARQMVKYANVVVYSYQYLLDPKVASIVSREMQKECVVVFDE 238
Query: 116 AHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDA 175
AHNIDNVC+++LSV + ++T++ A N++ + + K D+ +LR EY RLV+GL
Sbjct: 239 AHNIDNVCIEALSVSVRKQTLDGAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLAQR 298
Query: 176 QSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPA 235
+ +D LANP LPD+IL+E VPGNIR AEHF+ LKR +++L RL + V E P
Sbjct: 299 GNLPISDAWLANPSLPDDILKEAVPGNIRKAEHFLAVLKRLVKFLDGRLETENVENEMPV 358
Query: 236 TFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKP 295
+F+ I S+ I+++
Sbjct: 359 SFVASIHSQAG--------------------------------------------IDQRM 374
Query: 296 LRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNP 355
LRFC +RL SLL TLEIT+ +F + I ATL+ +Y++GF+II+EP+ D+ P + +P
Sbjct: 375 LRFCYDRLHSLLLTLEITDTDEFMHIQTICDFATLIGTYSRGFSIIIEPYDDRMPEIRDP 434
Query: 356 VLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLL 415
V+ C D+SLAI+PVF+RFQTVVITSGTLSP+ +YP++LNFQPVI SF+M+L R C+
Sbjct: 435 VIQLSCHDASLAIQPVFERFQTVVITSGTLSPITLYPRLLNFQPVISRSFTMSLTRDCIC 494
Query: 416 PMV 418
PMV
Sbjct: 495 PMV 497
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 141/221 (63%), Gaps = 12/221 (5%)
Query: 636 NLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAG-ENIPVCDFYE 694
L RK L + Q S S RD VD C LT+S VRD+ + E+ P+C+F+E
Sbjct: 106 GLSSRKNLCVHPQ-----ASASAARDS--VDTACRRLTASWVRDKAASDPESTPLCEFFE 158
Query: 695 KFDAVGREAPLA----PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDP 750
FD L+ PGVY++ L+ +GRE +CPYFLARQ + +A +VVYSY YLLDP
Sbjct: 159 SFDRAAAAGDLSSFMPPGVYTLADLRSLGRERRICPYFLARQMVKYANVVVYSYQYLLDP 218
Query: 751 KIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKE 810
K+A++VS+E+ + VVVFDEAHNIDNVC+++LSV + ++T++ A N++ + + K
Sbjct: 219 KVASIVSREMQKECVVVFDEAHNIDNVCIEALSVSVRKQTLDGAERNLRRISQEIDRFKA 278
Query: 811 ADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
D+ +LR EY RLV+GL + +D LANP LPD+IL+
Sbjct: 279 TDANRLRAEYNRLVDGLAQRGNLPISDAWLANPSLPDDILK 319
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 100/161 (62%), Gaps = 8/161 (4%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ++ L V FPY IYPEQ+AYM ELK+ALDA+GH LLEMP+GTGKT +L+SLI +Y
Sbjct: 1 MKFDLEGLTVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPTGTGKTAALISLITSYS 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIH--- 540
A+P +L+YC+RTV E+EK + EL LF ++ ++ L LSSRKNLC+H
Sbjct: 61 LANPSRPLRLIYCTRTVHEMEKTLAELRLLFS-HLPPEASRSLLALGLSSRKNLCVHPQA 119
Query: 541 SEFETRD--DISVIRNYGQLLVDIACVVPDGV-VC-FFTSY 577
S RD D + R + D A P+ +C FF S+
Sbjct: 120 SASAARDSVDTACRRLTASWVRDKAASDPESTPLCEFFESF 160
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ + L + + F+ R D V+RNYG+LL+++A VPDG+VCFF SY Y++
Sbjct: 492 CICP-MVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASSVPDGIVCFFVSYSYMDG 550
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+V SW + GI+ ++ + KL+FIET D +++
Sbjct: 551 IVNSWNEMGILQDIMQHKLVFIETPDVVET 580
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+MIFADKR++R DKRSKLP WI +L + NLST+ A+ ++ +LR+MAQ
Sbjct: 670 VIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHEAHLNLSTDMALHTAREFLRRMAQ 729
Query: 909 PFTREDMLGVALLSLDQLLEKEHARAEEE 937
P+ + G L ++ L+ + RA E
Sbjct: 730 PYDKAGSGGAKTLLTEEDLQ-DMGRAPME 757
>gi|71994598|ref|NP_497182.2| Protein Y50D7A.2 [Caenorhabditis elegans]
gi|351059416|emb|CCD73788.1| Protein Y50D7A.2 [Caenorhabditis elegans]
Length = 606
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/359 (51%), Positives = 246/359 (68%), Gaps = 48/359 (13%)
Query: 60 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
L+ +GRE +CPYF ARQAI A IVVYSYHY+LDPKIA +VSK+ +R SVVVFDEAHNI
Sbjct: 29 LRSLGREKKICPYFTARQAINRAHIVVYSYHYILDPKIAELVSKDFSRKSVVVFDEAHNI 88
Query: 120 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 179
DNVC++S+SV I+++ ++A+ +Q+LEG + MK ++S KL+ EY +LVEGL+ + R
Sbjct: 89 DNVCIESMSVAISQKNADRALQELQSLEGVVNRMKSSNSEKLQSEYDKLVEGLKRTERER 148
Query: 180 ETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLK 239
D LANPVLPD+IL E VPGNIR A HF+ FLKRF+EY++ RLR QV+ ESPA F+K
Sbjct: 149 ANDERLANPVLPDQILHEAVPGNIRQANHFLLFLKRFVEYIRHRLRTHQVLIESPAAFMK 208
Query: 240 DISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFC 299
D I ++CIERKP+RFC
Sbjct: 209 D--------------------------------------------ILDRMCIERKPMRFC 224
Query: 300 AERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYF 359
AERL++L++TLEIT+ D +L +T L TLVS+Y+KGF++IVEP D + V+
Sbjct: 225 AERLSNLVKTLEITDNGDVWALSQVTTLCTLVSTYSKGFSVIVEP-QDGSQLA---VITL 280
Query: 360 CCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C D+S+AI+PV RFQ+V+ITSGTLSPL+MYPK+L+F P ++ SF+MTLARPCL P+V
Sbjct: 281 SCHDASIAIRPVMSRFQSVIITSGTLSPLEMYPKVLDFDPSVIASFTMTLARPCLSPLV 339
Score = 172 bits (436), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/137 (58%), Positives = 106/137 (77%)
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L+ +GRE +CPYF ARQAI A IVVYSYHY+LDPKIA +VSK+ +R SVVVFDEAHNI
Sbjct: 29 LRSLGREKKICPYFTARQAINRAHIVVYSYHYILDPKIAELVSKDFSRKSVVVFDEAHNI 88
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
DNVC++S+SV I+++ ++A+ +Q+LEG + MK ++S KL+ EY +LVEGL+ + R
Sbjct: 89 DNVCIESMSVAISQKNADRALQELQSLEGVVNRMKSSNSEKLQSEYDKLVEGLKRTERER 148
Query: 835 ETDVVLANPVLPDEILQ 851
D LANPVLPD+IL
Sbjct: 149 ANDERLANPVLPDQILH 165
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 72/106 (67%), Gaps = 6/106 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD +E D + + + L+ KTDYG+M+FADKRF+R+DKR KL
Sbjct: 480 ARL-EYLRDQFGIKENDFLTFDAMRHTAQCMGRALRSKTDYGLMVFADKRFSRNDKRGKL 538
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALL 921
P+W+QEYL TNLS +EA Q+++RWL MAQPF +E LGV+LL
Sbjct: 539 PRWMQEYLEPACTNLSIDEAAQVARRWLTLMAQPFEKEHQLGVSLL 584
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 85/140 (60%), Gaps = 5/140 (3%)
Query: 548 DISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVV 607
D SVI ++ L C+ P VV + + S FE R D++VIRNYG L++++A +V
Sbjct: 319 DPSVIASFTMTLAR-PCLSP-LVVARGNDQVAMTSRFEQRADVAVIRNYGNLVLEMASLV 376
Query: 608 PDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDG 667
PDG+V FFTSYLY+E+V+ WY+Q IID L K KLLFIET DAL++ + ++ G
Sbjct: 377 PDGMVVFFTSYLYMENVIGVWYEQHIIDELMKYKLLFIETNDALETSAALEKYVEACDSG 436
Query: 668 RCHSLTSSSVRDRHKAGENI 687
R L S + R K E I
Sbjct: 437 RGAVLFSVA---RGKVSEGI 453
>gi|255072415|ref|XP_002499882.1| predicted protein [Micromonas sp. RCC299]
gi|226515144|gb|ACO61140.1| predicted protein [Micromonas sp. RCC299]
Length = 797
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/431 (43%), Positives = 262/431 (60%), Gaps = 59/431 (13%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAG---------ENIPVCDFYEKFDAVGREAPLA 51
V+ E + VD C LT+S VRD+H A +C+F+E ++ G A L
Sbjct: 120 VADEGSRESVDANCRRLTASWVRDKHMAALANEEEAPENAPELCEFFEDYEKEGPNAILP 179
Query: 52 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 111
PGVY++ L++ GR+ G CPYFLAR I A +VVY+Y YLLDPK+AN+VS+EL R VV
Sbjct: 180 PGVYTLADLRDFGRKKGWCPYFLARHMISFANVVVYNYQYLLDPKVANMVSRELERECVV 239
Query: 112 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEG 171
VFDEAHNIDNVC+++LSV + ++T++ A NI L ++ +K D +LREEY RLV G
Sbjct: 240 VFDEAHNIDNVCIEALSVNLRQQTLDGASRNIAQLTQRIEHVKAHDEQRLREEYTRLVNG 299
Query: 172 LRDAQSA----RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQ 227
L AQ +D ++ANPV+ ++IL+E VPGNIR AEHF+ FL+RF+E
Sbjct: 300 L--AQQGVLDRARSDQLIANPVISEDILREAVPGNIRRAEHFIAFLRRFVE--------- 348
Query: 228 QVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISS 287
+LK R+R V QE+P FL +
Sbjct: 349 -----------------------------------YLKQRMRGGSVEQETPIAFLAHLQQ 373
Query: 288 KVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSD 347
I+ K L+FC +R+ SLL+TLE+ + DFS++ +I ATLV +Y KGFA+I+EP+ +
Sbjct: 374 TAAIDGKTLKFCYDRITSLLKTLEVVDTEDFSAISLICDFATLVGTYEKGFALILEPYDE 433
Query: 348 KAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSM 407
+ P +P+PV CLD+S AI PVFD+F +V ITSGTLSP+++YP++L F+PV + M
Sbjct: 434 RYPNIPDPVFQLTCLDASYAIAPVFDKFNSVFITSGTLSPINLYPQLLGFKPVCSAALDM 493
Query: 408 TLARPCLLPMV 418
TL R CL PMV
Sbjct: 494 TLTRECLCPMV 504
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/209 (45%), Positives = 134/209 (64%), Gaps = 15/209 (7%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAG---------ENIPVCDFYEKFDAVGREAPLA 706
V+ E + VD C LT+S VRD+H A +C+F+E ++ G A L
Sbjct: 120 VADEGSRESVDANCRRLTASWVRDKHMAALANEEEAPENAPELCEFFEDYEKEGPNAILP 179
Query: 707 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 766
PGVY++ L++ GR+ G CPYFLAR I A +VVY+Y YLLDPK+AN+VS+EL R VV
Sbjct: 180 PGVYTLADLRDFGRKKGWCPYFLARHMISFANVVVYNYQYLLDPKVANMVSRELERECVV 239
Query: 767 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEG 826
VFDEAHNIDNVC+++LSV + ++T++ A NI L ++ +K D +LREEY RLV G
Sbjct: 240 VFDEAHNIDNVCIEALSVNLRQQTLDGASRNIAQLTQRIEHVKAHDEQRLREEYTRLVNG 299
Query: 827 LRDAQSA----RETDVVLANPVLPDEILQ 851
L AQ +D ++ANPV+ ++IL+
Sbjct: 300 L--AQQGVLDRARSDQLIANPVISEDILR 326
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/118 (57%), Positives = 86/118 (72%), Gaps = 2/118 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ++ L V+FPYEY+YPEQY YM+ELK+ALDAKGH LEMP+GTGKT + LSLI +Y
Sbjct: 1 MIFNLEGLTVYFPYEYLYPEQYRYMLELKRALDAKGHGCLEMPTGTGKTITCLSLITSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIH 540
+P + KL+YC+RTVPE+EKV+ EL L Y KH + + L LSSRKN+CIH
Sbjct: 61 LQNP-ECGKLIYCTRTVPEMEKVLAELRNLQAYREKHVGKASQIMALGLSSRKNMCIH 117
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 54/70 (77%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
F+ RDD VI+NYG++L+D+ VPDG+V FF SY Y+E +++ W++ G++ + +RKL+
Sbjct: 518 FDMRDDPGVIQNYGRVLIDLCSCVPDGIVAFFVSYSYMEQIISKWHETGVLQQVMRRKLV 577
Query: 644 FIETQDALDS 653
F+ETQD +++
Sbjct: 578 FLETQDVVET 587
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 6/106 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ +E D + + V +++ K DYG+M+F DKR+ DKR KL
Sbjct: 645 ARL-EYLRETFQIKEADFLSFDAVRQAAQCVGRVIRSKADYGLMVFCDKRYNSHDKRGKL 703
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALL 921
PKWI +L + NLST+ AV ++++++R MAQP+ R +G +LL
Sbjct: 704 PKWITSHLHEQQLNLSTDMAVAIARQFMRDMAQPYDRAGQMGKSLL 749
>gi|320583366|gb|EFW97581.1| DNA repair helicase RAD3 [Ogataea parapolymorpha DL-1]
Length = 1061
Score = 371 bits (952), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 188/420 (44%), Positives = 267/420 (63%), Gaps = 47/420 (11%)
Query: 2 SKERDGKIVDGRCHSLTSSSVRDRHKAGE--NIPVCDFYEKFDAVGREAPLAPGVYSITK 59
S+ER G +VD C +T+ ++ R + G+ +C F+EK + PGVYS +
Sbjct: 417 SRERKGVVVDEMCRRMTNGQLKARIEQGQASTDQLCSFHEKLYEKDPANLVPPGVYSFEQ 476
Query: 60 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
L + + G CPYF R+ + I++YSYHYLLDPKIA VSKEL+R S+++FDEAHNI
Sbjct: 477 LMKYCKMEGTCPYFTIRRMMPFCNIIIYSYHYLLDPKIAERVSKELSRDSIIIFDEAHNI 536
Query: 120 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQ-SA 178
DNVC++SLS+ + + +A L ++E+K+ DS +L++EY +LVEGLR+++
Sbjct: 537 DNVCIESLSLDLTEDVLRRASKGANALARKVEEVKKTDSKRLQDEYEKLVEGLRESEIYH 596
Query: 179 RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL 238
+ D + NPVLPD++L E VPG+IR AEHF+ FLKRFIEYLKTR++V V+ E+P +FL
Sbjct: 597 TDEDAFMVNPVLPDDVLTEAVPGSIRRAEHFISFLKRFIEYLKTRMKVLHVISETPVSFL 656
Query: 239 KDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRF 298
+HLK TF I+RKPLRF
Sbjct: 657 -----------------------QHLKQ------------LTF---------IDRKPLRF 672
Query: 299 CAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLY 358
C+ERL+ L+RTLE+ + +F +L I TLVS+Y GF +I+EP+ + TVPNP+L
Sbjct: 673 CSERLSLLVRTLEVVEIEEFMALKDIATFGTLVSTYDTGFVLILEPYETENATVPNPILR 732
Query: 359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
F CLD+S+A+KP+F+RF +V+ITSGT+SPLDMYP++LNF+ V+ S++MTL R LPMV
Sbjct: 733 FACLDASIAMKPIFERFSSVIITSGTISPLDMYPRMLNFETVVQESYTMTLDRRSFLPMV 792
Score = 169 bits (427), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 126/197 (63%), Gaps = 3/197 (1%)
Query: 657 SKERDGKIVDGRCHSLTSSSVRDRHKAGE--NIPVCDFYEKFDAVGREAPLAPGVYSITK 714
S+ER G +VD C +T+ ++ R + G+ +C F+EK + PGVYS +
Sbjct: 417 SRERKGVVVDEMCRRMTNGQLKARIEQGQASTDQLCSFHEKLYEKDPANLVPPGVYSFEQ 476
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L + + G CPYF R+ + I++YSYHYLLDPKIA VSKEL+R S+++FDEAHNI
Sbjct: 477 LMKYCKMEGTCPYFTIRRMMPFCNIIIYSYHYLLDPKIAERVSKELSRDSIIIFDEAHNI 536
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQ-SA 833
DNVC++SLS+ + + +A L ++E+K+ DS +L++EY +LVEGLR+++
Sbjct: 537 DNVCIESLSLDLTEDVLRRASKGANALARKVEEVKKTDSKRLQDEYEKLVEGLRESEIYH 596
Query: 834 RETDVVLANPVLPDEIL 850
+ D + NPVLPD++L
Sbjct: 597 TDEDAFMVNPVLPDDVL 613
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/116 (57%), Positives = 84/116 (72%), Gaps = 2/116 (1%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
IDDLPV FPY IYPEQYAYM ++K+ LD G+C+LEMPSGTGKT SLLSL VAY
Sbjct: 299 FFIDDLPVLFPYPKIYPEQYAYMCDIKRTLDVGGNCILEMPSGTGKTISLLSLTVAYQMH 358
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL +L +Y K + + GL L+SRKNLC+H
Sbjct: 359 YP-EHRKIVYCSRTMSEIEKALIELHKLMEYRSKELGFVEDFRGLGLTSRKNLCLH 413
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D SV+RNYG LL++ + + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 802 ISSRFEIRNDPSVVRNYGTLLIEFSKITPDGMVVFFPSYLYMESIISQWQTMGILDEVWK 861
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 862 YKLILVETPDAQETSLALETYRKACSNGRGAVLLSVA---RGKVSEGI 906
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 78/124 (62%), Gaps = 12/124 (9%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GK DYG+M+ AD+RFA+ K+S+L
Sbjct: 933 ARL-EFLRDHYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFAK--KKSQL 989
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDM-LGVALLSLDQLLEKEHARA 934
PKWI + L+D NLST+ A+ +K++LR +AQP ++D GV++ +LDQL E +
Sbjct: 990 PKWIAQALSDADINLSTDMAIASAKKFLRTLAQPIEQKDQEQGVSVWTLDQL---EKYQK 1046
Query: 935 EEEE 938
E+ E
Sbjct: 1047 EQNE 1050
>gi|366997945|ref|XP_003683709.1| hypothetical protein TPHA_0A01920 [Tetrapisispora phaffii CBS 4417]
gi|357522004|emb|CCE61275.1| hypothetical protein TPHA_0A01920 [Tetrapisispora phaffii CBS 4417]
Length = 773
Score = 370 bits (951), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 208/507 (41%), Positives = 297/507 (58%), Gaps = 77/507 (15%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKA--GENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
V+KER G +VD +C +T+ + +A N +CD++E + + L GV+S
Sbjct: 120 VNKERKGTVVDEKCRRMTNGQAKRAIEADPNANAELCDYHENLYKLEVDDYLPNGVFSFE 179
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
KL + + LCPYF+ R+ I I++YSYHYLLDPKIA VS E+++ S+V+FDEAHN
Sbjct: 180 KLIKYCNDKTLCPYFIVRRMISMCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + ++KA TL ++++K+ DS KL++EY +LV+GL +++
Sbjct: 240 IDNVCIESLSLDLTNDILKKATKGANTLANKIEDVKKVDSKKLQDEYDKLVQGLHLSENE 299
Query: 179 RETD-VVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATF 237
E D + NPVL ++IL+E +PGNIR AEHF+ FLKR IEYLKTR++V V+ E+P +F
Sbjct: 300 NEDDEPFVENPVLSEDILKEAIPGNIRRAEHFISFLKRLIEYLKTRMKVLHVISETPKSF 359
Query: 238 LKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLR 297
L +HLK TF I++KPLR
Sbjct: 360 L-----------------------QHLKQ------------LTF---------IDKKPLR 375
Query: 298 FCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVL 357
FCAERL+ L+RTLE+T++ DF++L I ATLVS+Y GF +I+EPF + VPNP+L
Sbjct: 376 FCAERLSLLVRTLEVTDVEDFAALKDIATFATLVSTYEDGFLLIIEPFELENAAVPNPIL 435
Query: 358 YFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM 417
F CLD+S+AIKPVF+RF +V+ITSGT+SPLDMYP++LNF V+ S++MTL + LPM
Sbjct: 436 RFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFTTVLQKSYTMTLTKKTFLPM 495
Query: 418 ----------------------VRENYAMGLM------IDDLPVFFPYEYIYPEQYAYMV 449
+ NY L+ D + VFFP Y+Y E M
Sbjct: 496 IITKGSDQVAISSRFEIRNDPSIVRNYGSMLIEFAKITPDGMVVFFP-SYLYMESIISMW 554
Query: 450 ELKKALD-AKGHCLLEMPSGTGKTTSL 475
+ LD H L+ + + + TSL
Sbjct: 555 QTMGILDEVWKHKLILVETPDAQETSL 581
Score = 162 bits (410), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 128/199 (64%), Gaps = 3/199 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKA--GENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
V+KER G +VD +C +T+ + +A N +CD++E + + L GV+S
Sbjct: 120 VNKERKGTVVDEKCRRMTNGQAKRAIEADPNANAELCDYHENLYKLEVDDYLPNGVFSFE 179
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
KL + + LCPYF+ R+ I I++YSYHYLLDPKIA VS E+++ S+V+FDEAHN
Sbjct: 180 KLIKYCNDKTLCPYFIVRRMISMCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC++SLS+ + ++KA TL ++++K+ DS KL++EY +LV+GL +++
Sbjct: 240 IDNVCIESLSLDLTNDILKKATKGANTLANKIEDVKKVDSKKLQDEYDKLVQGLHLSENE 299
Query: 834 RETD-VVLANPVLPDEILQ 851
E D + NPVL ++IL+
Sbjct: 300 NEDDEPFVENPVLSEDILK 318
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 83/120 (69%), Gaps = 6/120 (5%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQY YM ++K+ LDA G+ +LEMPSGTGKT SLLSL VAY
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYHYMCDIKRTLDAGGNSILEMPSGTGKTVSLLSLTVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH---NEEINMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL L DY K EE GL LSSRKNLC+H
Sbjct: 61 MHYP-EHRKIIYCSRTMSEIEKALVELENLMDYRTKELGFKEEFR--GLGLSSRKNLCLH 117
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D S++RNYG +L++ A + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 506 ISSRFEIRNDPSIVRNYGSMLIEFAKITPDGMVVFFPSYLYMESIISMWQTMGILDEVWK 565
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 566 HKLILVETPDAQETSLALETYRKACSNGRGAILFSVA---RGKVSEGI 610
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 73/115 (63%), Gaps = 8/115 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF+R +R++L
Sbjct: 637 ARL-EFLRENYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFSR--RRNQL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKE 930
PKWI + L+D NLST+ AV +K++LR MAQP D GV++ + ++L++ +
Sbjct: 694 PKWIAQGLSDANLNLSTDMAVSNTKKFLRTMAQPTNPNDQEGVSVWNHEELVKHQ 748
>gi|255718745|ref|XP_002555653.1| KLTH0G14300p [Lachancea thermotolerans]
gi|238937037|emb|CAR25216.1| KLTH0G14300p [Lachancea thermotolerans CBS 6340]
Length = 782
Score = 370 bits (950), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 189/422 (44%), Positives = 267/422 (63%), Gaps = 50/422 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
V KER G +VD +C +T+ + NI +CDF+E + + E + GVYS
Sbjct: 120 VRKERKGTVVDEKCRRMTNGQAARKAEQDPTANIELCDFHENLNTMDPENYVPVGVYSFE 179
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
KL + E +CPYF R+ I I++YSYHYLLDPKI+ VSKE++R ++V+FDEAHN
Sbjct: 180 KLIKYCEERTMCPYFTVRRMIAMCDIMIYSYHYLLDPKISERVSKEVSRDAIVIFDEAHN 239
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR--DAQ 176
IDNVC++SLS+ + +++A L ++E+++ DS +L++EY +LV GLR D
Sbjct: 240 IDNVCIESLSLDLTNDVLKRATKGANNLNEKIQEVRQVDSQRLQDEYEKLVNGLRAPDML 299
Query: 177 SARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPAT 236
A E V +PVL ++L E +PGNIR AEHFV FLKRFIEYLKTR++V V+ E+P +
Sbjct: 300 GAEEPPV--ESPVLSQDLLSEAIPGNIRRAEHFVSFLKRFIEYLKTRMKVLHVISETPNS 357
Query: 237 FLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPL 296
FL +HLK TF IERKPL
Sbjct: 358 FL-----------------------QHLKQ------------LTF---------IERKPL 373
Query: 297 RFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPV 356
RFC+ERL+ L+RTLE++ + +F++L I ATL+S+Y +GF +I+EP+ + VPNP+
Sbjct: 374 RFCSERLSLLVRTLEVSEIEEFTALKDIATFATLISTYEEGFVLIIEPYEIENAAVPNPI 433
Query: 357 LYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLP 416
+ F CLD+S+AIKPVFD+F +V+ITSGT+SPLDMYPK+LNF+ V+ S++MTLA+ LP
Sbjct: 434 MRFTCLDASIAIKPVFDKFSSVIITSGTISPLDMYPKMLNFETVLQESYAMTLAKKSFLP 493
Query: 417 MV 418
M+
Sbjct: 494 MI 495
Score = 159 bits (403), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 122/199 (61%), Gaps = 6/199 (3%)
Query: 656 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
V KER G +VD +C +T+ + NI +CDF+E + + E + GVYS
Sbjct: 120 VRKERKGTVVDEKCRRMTNGQAARKAEQDPTANIELCDFHENLNTMDPENYVPVGVYSFE 179
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
KL + E +CPYF R+ I I++YSYHYLLDPKI+ VSKE++R ++V+FDEAHN
Sbjct: 180 KLIKYCEERTMCPYFTVRRMIAMCDIMIYSYHYLLDPKISERVSKEVSRDAIVIFDEAHN 239
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR--DAQ 831
IDNVC++SLS+ + +++A L ++E+++ DS +L++EY +LV GLR D
Sbjct: 240 IDNVCIESLSLDLTNDVLKRATKGANNLNEKIQEVRQVDSQRLQDEYEKLVNGLRAPDML 299
Query: 832 SARETDVVLANPVLPDEIL 850
A E V +PVL ++L
Sbjct: 300 GAEEPPV--ESPVLSQDLL 316
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 83/120 (69%), Gaps = 6/120 (5%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQY YM ++KK LDA G+ +LEMPSGTGKT SLLSL VAY
Sbjct: 1 MKFYIDDLPVIFPYPKIYPEQYQYMCDIKKTLDAGGNSILEMPSGTGKTVSLLSLAVAY- 59
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK---HNEEINMTGLVLSSRKNLCIH 540
H + K++YCSRT+ EIEK + EL L DY K H E + GL L+SRKNLC+H
Sbjct: 60 QTHYAEHRKIIYCSRTMSEIEKALVELESLMDYRSKELGHKE--HFRGLGLTSRKNLCLH 117
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D S++RNYG +LV+ A + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 505 ISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFPSYLYMESIISMWQTMGILDEVWK 564
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKF 696
KL+ +ET DA ++ + +GR L S + R K E I DF F
Sbjct: 565 YKLILVETPDAQETSLALETYRKACSNGRGAILLSVA---RGKVSEGI---DFDHHF 615
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 78/122 (63%), Gaps = 8/122 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RFAR K+ +L
Sbjct: 636 ARL-EFLREHYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFAR--KKGQL 692
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + L+D NLST+ A+ +K++LR MAQP +D GV+L + DQL++ ++ + +
Sbjct: 693 PKWIAQGLSDADLNLSTDMAIANTKQFLRTMAQPTDPKDQEGVSLWNFDQLIQFQNEQKK 752
Query: 936 EE 937
++
Sbjct: 753 KK 754
>gi|385302835|gb|EIF46944.1| dna repair helicase rad3 [Dekkera bruxellensis AWRI1499]
Length = 803
Score = 369 bits (948), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 198/487 (40%), Positives = 289/487 (59%), Gaps = 76/487 (15%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP--VCDFYEKFDAVGREAPLAPGVYSIT 58
V KE+ G +VD C LT+ + ++ +AGE +C ++EK + PGVYS
Sbjct: 120 VGKEKKGTVVDEMCRRLTNGQLGEKVRAGEANADELCSWHEKLYEKDPANLIPPGVYSFQ 179
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+L + ++ G CPYF R+ + IV+YSYHY++DPK+A VSK+L++ S+V+FDEAHN
Sbjct: 180 QLLDYCKQEGTCPYFTVRRMMPLCNIVIYSYHYIIDPKVAVRVSKDLSKDSIVIFDEAHN 239
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC+++LS+ I+ +++A L + ++K+ DS++L++EY +LV GLR++
Sbjct: 240 IDNVCIEALSMDIDEDMLQRATRGANDLSRKVDQVKKVDSSRLQDEYEKLVAGLRESDML 299
Query: 179 RET-DVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATF 237
+E+ + + NP+LP ++LQE +PG+IR AEHF+ F+KRFIEYLKTR++V V+ E+P +F
Sbjct: 300 KESEEPFMENPILPSDVLQEAIPGSIRRAEHFISFMKRFIEYLKTRMKVLHVISETPTSF 359
Query: 238 LKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLR 297
L +HLK I+RKPLR
Sbjct: 360 L-----------------------QHLK---------------------QLTYIDRKPLR 375
Query: 298 FCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVL 357
FC+ERL+ L+RTLE+ ++ +F+SL I ATLVS+Y GF +I+EP+ + TVPNP+L
Sbjct: 376 FCSERLSMLVRTLEVXDIEEFTSLKDIATFATLVSTYENGFMLILEPYETENATVPNPIL 435
Query: 358 YFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM 417
F C+D+S+AIKPVFDRF +VVITSGT+SPLDMYP++LNF V+ S++MTL R LP+
Sbjct: 436 RFTCMDASIAIKPVFDRFPSVVITSGTISPLDMYPRMLNFDTVVQESYAMTLDRRAFLPL 495
Query: 418 ----------------------VRENYAMGLM------IDDLPVFFPYEYIYPEQYAYMV 449
V NY LM D + VFFP Y+Y E M
Sbjct: 496 IVTKGSDQVAISSRFEIRNDPSVVRNYGTLLMEFVKITPDGMVVFFP-SYLYMESIISMW 554
Query: 450 ELKKALD 456
+ LD
Sbjct: 555 QGMGILD 561
Score = 162 bits (411), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 130/199 (65%), Gaps = 3/199 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP--VCDFYEKFDAVGREAPLAPGVYSIT 713
V KE+ G +VD C LT+ + ++ +AGE +C ++EK + PGVYS
Sbjct: 120 VGKEKKGTVVDEMCRRLTNGQLGEKVRAGEANADELCSWHEKLYEKDPANLIPPGVYSFQ 179
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
+L + ++ G CPYF R+ + IV+YSYHY++DPK+A VSK+L++ S+V+FDEAHN
Sbjct: 180 QLLDYCKQEGTCPYFTVRRMMPLCNIVIYSYHYIIDPKVAVRVSKDLSKDSIVIFDEAHN 239
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC+++LS+ I+ +++A L + ++K+ DS++L++EY +LV GLR++
Sbjct: 240 IDNVCIEALSMDIDEDMLQRATRGANDLSRKVDQVKKVDSSRLQDEYEKLVAGLRESDML 299
Query: 834 RET-DVVLANPVLPDEILQ 851
+E+ + + NP+LP ++LQ
Sbjct: 300 KESEEPFMENPILPSDVLQ 318
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/118 (55%), Positives = 83/118 (70%), Gaps = 2/118 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLP+ FPY IYPEQYAYM ++KK +D G+ +LEMPSGTGKT +LL+L VAY
Sbjct: 1 MKFFIDDLPILFPYPKIYPEQYAYMCDVKKCIDVGGNGVLEMPSGTGKTIALLALSVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL L DY K + N GL L+SRKNLC+H
Sbjct: 61 MYYP-EHRKIIYCSRTMSEIEKALIELEXLMDYRAKELGHVENFRGLGLTSRKNLCLH 117
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D SV+RNYG LL++ + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 506 ISSRFEIRNDPSVVRNYGTLLMEFVKITPDGMVVFFPSYLYMESIISMWQGMGILDEVWK 565
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KL+ +ET DA ++ + ++GR L S + R K E I +Y +
Sbjct: 566 YKLILVETPDAQETALALETYRKACLNGRGAVLLSVA---RGKVSEGIDFDHYYGR 618
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 69/112 (61%), Gaps = 9/112 (8%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GK DYG+M+ AD+RF R KRS+L
Sbjct: 637 ARL-EFLRDNYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFLR--KRSQL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDM-LGVALLSLDQL 926
PKWI + L D NLST+ A+ +K++LR AQP +D GV++ +++QL
Sbjct: 694 PKWIAQGLLDANVNLSTDMAIAAAKKFLRTAAQPLNPKDQEKGVSVWNIEQL 745
>gi|50306065|ref|XP_452994.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642127|emb|CAH01845.1| KLLA0C17776p [Kluyveromyces lactis]
Length = 778
Score = 369 bits (946), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 187/421 (44%), Positives = 269/421 (63%), Gaps = 47/421 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAG--ENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKER G +VD +C +T+ R + + N+ +CD++E L PGV+S
Sbjct: 120 VSKERKGNVVDEKCRRMTNGQARKKKEENPDANVELCDYHENMYNYDVADYLPPGVFSFE 179
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+L E +CPYF R+ I I++YSYHYLLDPKIA VSKE+++ ++V+FDEAHN
Sbjct: 180 RLIRFCEEKRMCPYFTVRRMISMCNIIIYSYHYLLDPKIAERVSKEVSKDAIVIFDEAHN 239
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQ-S 177
IDNVC++SLS+ + + ++KA L+ ++EMK+ DS KL++EY +LV GLR +
Sbjct: 240 IDNVCIESLSLDLTKDLLKKATKGANALDRKVEEMKKVDSQKLQDEYEKLVHGLRASDIL 299
Query: 178 ARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATF 237
E + ++ PVL ++IL+E +PGNIR A HF+ FLKRFIEYLKTR++V V+ E+P +F
Sbjct: 300 EPEEEPLVETPVLSNDILKEAIPGNIRRATHFISFLKRFIEYLKTRMKVLHVISETPNSF 359
Query: 238 LKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLR 297
L L ++Q+ TF IERKPLR
Sbjct: 360 L-----------------------------LHLKQL------TF---------IERKPLR 375
Query: 298 FCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVL 357
FC+ERL+ L+RTLE+ + +F++L I ATL+S+Y GF +I+EP+ + VPNP++
Sbjct: 376 FCSERLSLLVRTLEVEEVEEFNALKDIATFATLISTYEDGFLLIIEPYEIENAAVPNPIV 435
Query: 358 YFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM 417
F CLD+S+AIKP+F+RF +V+ITSGT+SPLDMYPK+LNF+ V+ S+SMTLA+ LPM
Sbjct: 436 RFTCLDASIAIKPIFERFSSVIITSGTISPLDMYPKMLNFETVLQQSYSMTLAKKSFLPM 495
Query: 418 V 418
+
Sbjct: 496 I 496
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 126/199 (63%), Gaps = 3/199 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAG--ENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
VSKER G +VD +C +T+ R + + N+ +CD++E L PGV+S
Sbjct: 120 VSKERKGNVVDEKCRRMTNGQARKKKEENPDANVELCDYHENMYNYDVADYLPPGVFSFE 179
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
+L E +CPYF R+ I I++YSYHYLLDPKIA VSKE+++ ++V+FDEAHN
Sbjct: 180 RLIRFCEEKRMCPYFTVRRMISMCNIIIYSYHYLLDPKIAERVSKEVSKDAIVIFDEAHN 239
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQ-S 832
IDNVC++SLS+ + + ++KA L+ ++EMK+ DS KL++EY +LV GLR +
Sbjct: 240 IDNVCIESLSLDLTKDLLKKATKGANALDRKVEEMKKVDSQKLQDEYEKLVHGLRASDIL 299
Query: 833 ARETDVVLANPVLPDEILQ 851
E + ++ PVL ++IL+
Sbjct: 300 EPEEEPLVETPVLSNDILK 318
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/118 (58%), Positives = 83/118 (70%), Gaps = 2/118 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQY YM ++KK LDA G+ +LEMPSGTGKT SLLSL VAY
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYQYMCDIKKTLDAGGNSILEMPSGTGKTVSLLSLTVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL L DY K + + GL L+SRKNLC+H
Sbjct: 61 MHYP-EHRKIIYCSRTMSEIEKALVELESLMDYRSKELGFVEDFRGLGLTSRKNLCLH 117
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D S++RNYG +LV+ A + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 506 ISSRFEIRNDPSIVRNYGSMLVEFAKITPDGLVVFFPSYLYMESIISMWQTMGILDEVWK 565
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 566 YKLILVETPDAQETALALETYRKACSNGRGAILLSVA---RGKVSEGI 610
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 73/117 (62%), Gaps = 8/117 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RFAR K+S+L
Sbjct: 637 ARL-EFLRENYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFAR--KKSQL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHA 932
PKWI + L+D NLST+ A+ +K++LR MAQP +D GV++ S QLL + +
Sbjct: 694 PKWIAQGLSDADMNLSTDMAIANTKQFLRTMAQPTDPKDQEGVSVWSHAQLLAHQES 750
>gi|401625969|gb|EJS43941.1| rad3p [Saccharomyces arboricola H-6]
Length = 777
Score = 367 bits (943), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 205/507 (40%), Positives = 292/507 (57%), Gaps = 77/507 (15%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDR--HKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKER G +VD +C +T+ + + + N+ +C+++E + E L GV+S
Sbjct: 120 VSKERKGTVVDEKCRRMTNGQAKRKLEEDSNANVELCEYHENLYNIEVEDYLPKGVFSFE 179
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
KL E LCPYF+ R+ I I++YSYHYLLDPKIA VS E+++ S+V+FDEAHN
Sbjct: 180 KLLRYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + + +A L+ + E+++ DS KL++EY +LV+GL A
Sbjct: 240 IDNVCIESLSLDLTTDALRRATRGANALDERISEVRKVDSQKLQDEYEKLVQGLHSADIL 299
Query: 179 RET-DVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATF 237
E + + PVLP ++L E +PGNIR AEHFV FLKR IEYLKTR++V V+ E+P +F
Sbjct: 300 TEQEEPFVETPVLPQDLLTEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSF 359
Query: 238 LKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLR 297
L +HLK TF IERKPLR
Sbjct: 360 L-----------------------QHLKQ------------LTF---------IERKPLR 375
Query: 298 FCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVL 357
FC+ERL+ L+RTLE+ + DF++L I ATL+S+Y +GF +I+EP+ + VPNP++
Sbjct: 376 FCSERLSLLVRTLEVAEVEDFTALKDIATFATLISTYEEGFLLIIEPYEIENAAVPNPIM 435
Query: 358 YFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM 417
F CLD+S+AIKPVF+RF +V+ITSGT+SPLDMYP++LNF+ V+ S++MTLA+ LPM
Sbjct: 436 RFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFKTVLQKSYAMTLAKKSFLPM 495
Query: 418 ----------------------VRENYAMGLM------IDDLPVFFPYEYIYPEQYAYMV 449
+ NY L+ D + VFFP Y+Y E M
Sbjct: 496 IITKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFP-SYLYMESIVSMW 554
Query: 450 ELKKALD-AKGHCLLEMPSGTGKTTSL 475
+ LD H L+ + + + TSL
Sbjct: 555 QTMGILDEVWKHKLILVETPDAQETSL 581
Score = 159 bits (402), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 122/198 (61%), Gaps = 3/198 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDR--HKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
VSKER G +VD +C +T+ + + + N+ +C+++E + E L GV+S
Sbjct: 120 VSKERKGTVVDEKCRRMTNGQAKRKLEEDSNANVELCEYHENLYNIEVEDYLPKGVFSFE 179
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
KL E LCPYF+ R+ I I++YSYHYLLDPKIA VS E+++ S+V+FDEAHN
Sbjct: 180 KLLRYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC++SLS+ + + +A L+ + E+++ DS KL++EY +LV+GL A
Sbjct: 240 IDNVCIESLSLDLTTDALRRATRGANALDERISEVRKVDSQKLQDEYEKLVQGLHSADIL 299
Query: 834 RET-DVVLANPVLPDEIL 850
E + + PVLP ++L
Sbjct: 300 TEQEEPFVETPVLPQDLL 317
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/120 (55%), Positives = 83/120 (69%), Gaps = 2/120 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQY YM ++K+ LD G+ +LEMPSGTGKT SLLSL +AY
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYNYMCDIKRTLDVGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+P + K++YCSRT+ EIEK + EL L DY K + + GL L+SRKNLC+H E
Sbjct: 61 MHYP-EHRKIIYCSRTMSEIEKALVELENLMDYRTKELGYQEDFRGLGLTSRKNLCLHPE 119
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D S++RNYG +LV+ A + PDG+V FF SYLY+ES+V+ W GI+D + K
Sbjct: 506 ISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFPSYLYMESIVSMWQTMGILDEVWK 565
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 566 HKLILVETPDAQETSLALETYRKACSNGRGAILLSVA---RGKVSEGI 610
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 65/88 (73%), Gaps = 2/88 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYG+M+ AD+RF+R KRS+LPKWI + L+D NLST+ A+ +K++LR MAQ
Sbjct: 669 VLRGKDDYGVMVLADRRFSR--KRSQLPKWIAQGLSDADLNLSTDMAISNTKQFLRTMAQ 726
Query: 909 PFTREDMLGVALLSLDQLLEKEHARAEE 936
P +D GV++ S D L++ ++++ ++
Sbjct: 727 PTDPKDQEGVSVWSYDDLIKHQNSKKDQ 754
>gi|424513271|emb|CCO66855.1| predicted protein [Bathycoccus prasinos]
Length = 770
Score = 367 bits (943), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 188/440 (42%), Positives = 272/440 (61%), Gaps = 66/440 (15%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHK--------AGENIP------------VCDFYEK 40
VS+E + VD RC +LT+S VRD+ K G I +C+FYE
Sbjct: 101 VSEEGSRESVDARCRNLTASWVRDKAKEEAEEGDQKGTKIKTVLENEKIRKSNLCEFYED 160
Query: 41 FDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANV 100
+A+G EA + GVY++ L+E GRE CPYFLARQ + A +VVY+Y YLLDPK+A +
Sbjct: 161 LEALGAEAEVPKGVYTLQDLREFGREKRWCPYFLARQTLQRANVVVYNYQYLLDPKVAGL 220
Query: 101 VSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAK 160
VS+E +++VVFDEAHNIDNVC+++LSV + +T++ A NI TL + E+K+ D +
Sbjct: 221 VSREFEDNAIVVFDEAHNIDNVCIEALSVNLRSQTLDAAQRNITTLNTRITEVKKTDRKR 280
Query: 161 LREEYARLVEGL--RDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIE 218
L++EY RLV GL + A S + + ++ANPV+ ++++QEV+PGNIR AEHFV ++RF+E
Sbjct: 281 LQDEYERLVSGLANQGAISRQRGEDLMANPVISEDVVQEVIPGNIRRAEHFVAIMRRFVE 340
Query: 219 YLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESP 278
+L+ LR VVQ +P F +Q+S
Sbjct: 341 FLRHELRAPSVVQTAPRMF------------------------------------IQKSE 364
Query: 279 ATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGF 338
A ++ K L+FC +RL SLL+TLEI + +F +L + ATL+ +Y +GF
Sbjct: 365 AGG--------GVDAKTLKFCYDRLTSLLKTLEIVDTEEFGALSSVADFATLIGTYDQGF 416
Query: 339 AIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQ 398
II+EP+ ++ P +P+PVL CLD+SLA+KPVF+++Q+V ITSGTLSP+D+YP++L F+
Sbjct: 417 TIIMEPYDERYPHIPDPVLQLACLDASLAVKPVFEKYQSVFITSGTLSPIDLYPRLLKFR 476
Query: 399 PVIMHSFSMTLARPCLLPMV 418
P +M S MTL R CL PMV
Sbjct: 477 PNVMKSLMMTLTRKCLCPMV 496
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 140/218 (64%), Gaps = 22/218 (10%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHK--------AGENIP------------VCDFYEK 695
VS+E + VD RC +LT+S VRD+ K G I +C+FYE
Sbjct: 101 VSEEGSRESVDARCRNLTASWVRDKAKEEAEEGDQKGTKIKTVLENEKIRKSNLCEFYED 160
Query: 696 FDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANV 755
+A+G EA + GVY++ L+E GRE CPYFLARQ + A +VVY+Y YLLDPK+A +
Sbjct: 161 LEALGAEAEVPKGVYTLQDLREFGREKRWCPYFLARQTLQRANVVVYNYQYLLDPKVAGL 220
Query: 756 VSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAK 815
VS+E +++VVFDEAHNIDNVC+++LSV + +T++ A NI TL + E+K+ D +
Sbjct: 221 VSREFEDNAIVVFDEAHNIDNVCIEALSVNLRSQTLDAAQRNITTLNTRITEVKKTDRKR 280
Query: 816 LREEYARLVEGL--RDAQSARETDVVLANPVLPDEILQ 851
L++EY RLV GL + A S + + ++ANPV+ ++++Q
Sbjct: 281 LQDEYERLVSGLANQGAISRQRGEDLMANPVISEDVVQ 318
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 75/110 (68%), Gaps = 8/110 (7%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M+ELK ALDAKGH LEMP+GTGKT +LLSLI +Y +P KL+YC+RTVPE+EKV+
Sbjct: 1 MIELKHALDAKGHGALEMPTGTGKTITLLSLITSYQLQYPHSCGKLIYCTRTVPEMEKVL 60
Query: 508 EELARLFDYYIKH-----NEEINMTGLVLSSRKNLCIH---SEFETRDDI 549
EL L Y +H EE ++ L LSSRKNLC++ SE +R+ +
Sbjct: 61 AELKVLQKYREEHVEKGKEEETHILALGLSSRKNLCVNPKVSEEGSRESV 110
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ ++ S F+ R+D +VI+NYG++LV +A +PDG+V FF SY Y+E+
Sbjct: 491 CLCP-MVITRGADQQHISSKFDMREDPNVIQNYGKVLVGLAQSIPDGIVAFFVSYSYMEN 549
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+++ W+D GI+ + + KL+F+ETQD +++
Sbjct: 550 IISKWHDTGILREIMQHKLIFMETQDVVET 579
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 63/96 (65%), Gaps = 6/96 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ +E D + + + +++ K DYG+M+FADKR+ DKRSKL
Sbjct: 637 ARL-EYLRETLQIKEQDFLTFDAIRQASQCIGRVIRSKADYGLMVFADKRYNSHDKRSKL 695
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFT 911
PKWI ++T+ L NLST+ A+ +S+ ++R M+QPF+
Sbjct: 696 PKWISNHMTEELLNLSTDMALTVSRAFMRHMSQPFS 731
>gi|190405726|gb|EDV08993.1| DNA repair helicase RAD3 [Saccharomyces cerevisiae RM11-1a]
gi|207345787|gb|EDZ72494.1| YER171Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 780
Score = 367 bits (942), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 205/507 (40%), Positives = 293/507 (57%), Gaps = 77/507 (15%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDR--HKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKER G +VD +C +T+ + + N+ +C+++E + E L GV+S
Sbjct: 120 VSKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHENLYNIEVEDYLPKGVFSFE 179
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
KL + E LCPYF+ R+ I I++YSYHYLLDPKIA VS E+++ S+V+FDEAHN
Sbjct: 180 KLLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS- 177
IDNVC++SLS+ + + +A L+ + E+++ DS KL++EY +LV+GL A
Sbjct: 240 IDNVCIESLSLDLTTDALRRATRGANALDERISEVRKVDSQKLQDEYEKLVQGLHSADIL 299
Query: 178 ARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATF 237
+ + + PVLP ++L E +PGNIR AEHFV FLKR IEYLKTR++V V+ E+P +F
Sbjct: 300 TDQEEPFVETPVLPQDLLTEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSF 359
Query: 238 LKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLR 297
L +HLK TF IERKPLR
Sbjct: 360 L-----------------------QHLKQ------------LTF---------IERKPLR 375
Query: 298 FCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVL 357
FC+ERL+ L+RTLE+T + DF++L I ATL+S+Y +GF +I+EP+ + VPNP++
Sbjct: 376 FCSERLSLLVRTLEVTEVEDFTALKDIATFATLISTYEEGFLLIIEPYEIENAAVPNPIM 435
Query: 358 YFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM 417
F CLD+S+AIKPVF+RF +V+ITSGT+SPLDMYP++LNF+ V+ S++MTLA+ LPM
Sbjct: 436 RFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFKTVLQKSYAMTLAKKSFLPM 495
Query: 418 ----------------------VRENYAMGLM------IDDLPVFFPYEYIYPEQYAYMV 449
+ NY L+ D + VFFP Y+Y E M
Sbjct: 496 IITKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFP-SYLYMESIVSMW 554
Query: 450 ELKKALD-AKGHCLLEMPSGTGKTTSL 475
+ LD H L+ + + + TSL
Sbjct: 555 QTMGILDEVWKHKLILVETPDAQETSL 581
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 122/198 (61%), Gaps = 3/198 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDR--HKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
VSKER G +VD +C +T+ + + N+ +C+++E + E L GV+S
Sbjct: 120 VSKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHENLYNIEVEDYLPKGVFSFE 179
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
KL + E LCPYF+ R+ I I++YSYHYLLDPKIA VS E+++ S+V+FDEAHN
Sbjct: 180 KLLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS- 832
IDNVC++SLS+ + + +A L+ + E+++ DS KL++EY +LV+GL A
Sbjct: 240 IDNVCIESLSLDLTTDALRRATRGANALDERISEVRKVDSQKLQDEYEKLVQGLHSADIL 299
Query: 833 ARETDVVLANPVLPDEIL 850
+ + + PVLP ++L
Sbjct: 300 TDQEEPFVETPVLPQDLL 317
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/120 (56%), Positives = 83/120 (69%), Gaps = 2/120 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQY YM ++KK LD G+ +LEMPSGTGKT SLLSL +AY
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYNYMCDIKKTLDVGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+P + K++YCSRT+ EIEK + EL L DY K + + GL L+SRKNLC+H E
Sbjct: 61 MHYP-EHRKIIYCSRTMSEIEKALVELENLMDYRTKELGYQEDFRGLGLTSRKNLCLHPE 119
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D S++RNYG +LV+ A + PDG+V FF SYLY+ES+V+ W GI+D + K
Sbjct: 506 ISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFPSYLYMESIVSMWQTMGILDEVWK 565
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 566 HKLILVETPDAQETSLALETYRKACSNGRGAILLSVA---RGKVSEGI 610
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 65/88 (73%), Gaps = 2/88 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYG+M+ AD+RF+R KRS+LPKWI + L+D NLST+ A+ +K++LR MAQ
Sbjct: 669 VLRGKDDYGVMVLADRRFSR--KRSQLPKWIAQGLSDADLNLSTDMAISNTKQFLRTMAQ 726
Query: 909 PFTREDMLGVALLSLDQLLEKEHARAEE 936
P +D GV++ S + L++ +++R ++
Sbjct: 727 PTDPKDQEGVSVWSYEDLIKHQNSRKDQ 754
>gi|398365073|ref|NP_011098.3| Rad3p [Saccharomyces cerevisiae S288c]
gi|131812|sp|P06839.1|RAD3_YEAST RecName: Full=DNA repair helicase RAD3; AltName: Full=General
transcription and DNA repair factor IIH subunit RAD3;
Short=TFIIH subunit RAD3
gi|4269|emb|CAA26215.1| unnamed protein product [Saccharomyces cerevisiae]
gi|172331|gb|AAA34943.1| RAD3 protein [Saccharomyces cerevisiae]
gi|603412|gb|AAB64698.1| Rad3p: DNA repair helicase component of transcription factor b
[Saccharomyces cerevisiae]
gi|151944888|gb|EDN63147.1| transcription initiation factor TFIIH subunit [Saccharomyces
cerevisiae YJM789]
gi|256271309|gb|EEU06379.1| Rad3p [Saccharomyces cerevisiae JAY291]
gi|259146100|emb|CAY79360.1| Rad3p [Saccharomyces cerevisiae EC1118]
gi|285811805|tpg|DAA07833.1| TPA: Rad3p [Saccharomyces cerevisiae S288c]
gi|323305313|gb|EGA59060.1| Rad3p [Saccharomyces cerevisiae FostersB]
gi|323355348|gb|EGA87173.1| Rad3p [Saccharomyces cerevisiae VL3]
gi|349577832|dbj|GAA23000.1| K7_Rad3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392299876|gb|EIW10968.1| Rad3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 778
Score = 367 bits (942), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 205/507 (40%), Positives = 293/507 (57%), Gaps = 77/507 (15%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDR--HKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKER G +VD +C +T+ + + N+ +C+++E + E L GV+S
Sbjct: 120 VSKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHENLYNIEVEDYLPKGVFSFE 179
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
KL + E LCPYF+ R+ I I++YSYHYLLDPKIA VS E+++ S+V+FDEAHN
Sbjct: 180 KLLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS- 177
IDNVC++SLS+ + + +A L+ + E+++ DS KL++EY +LV+GL A
Sbjct: 240 IDNVCIESLSLDLTTDALRRATRGANALDERISEVRKVDSQKLQDEYEKLVQGLHSADIL 299
Query: 178 ARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATF 237
+ + + PVLP ++L E +PGNIR AEHFV FLKR IEYLKTR++V V+ E+P +F
Sbjct: 300 TDQEEPFVETPVLPQDLLTEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSF 359
Query: 238 LKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLR 297
L +HLK TF IERKPLR
Sbjct: 360 L-----------------------QHLKQ------------LTF---------IERKPLR 375
Query: 298 FCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVL 357
FC+ERL+ L+RTLE+T + DF++L I ATL+S+Y +GF +I+EP+ + VPNP++
Sbjct: 376 FCSERLSLLVRTLEVTEVEDFTALKDIATFATLISTYEEGFLLIIEPYEIENAAVPNPIM 435
Query: 358 YFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM 417
F CLD+S+AIKPVF+RF +V+ITSGT+SPLDMYP++LNF+ V+ S++MTLA+ LPM
Sbjct: 436 RFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFKTVLQKSYAMTLAKKSFLPM 495
Query: 418 ----------------------VRENYAMGLM------IDDLPVFFPYEYIYPEQYAYMV 449
+ NY L+ D + VFFP Y+Y E M
Sbjct: 496 IITKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFP-SYLYMESIVSMW 554
Query: 450 ELKKALD-AKGHCLLEMPSGTGKTTSL 475
+ LD H L+ + + + TSL
Sbjct: 555 QTMGILDEVWKHKLILVETPDAQETSL 581
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 122/198 (61%), Gaps = 3/198 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDR--HKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
VSKER G +VD +C +T+ + + N+ +C+++E + E L GV+S
Sbjct: 120 VSKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHENLYNIEVEDYLPKGVFSFE 179
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
KL + E LCPYF+ R+ I I++YSYHYLLDPKIA VS E+++ S+V+FDEAHN
Sbjct: 180 KLLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS- 832
IDNVC++SLS+ + + +A L+ + E+++ DS KL++EY +LV+GL A
Sbjct: 240 IDNVCIESLSLDLTTDALRRATRGANALDERISEVRKVDSQKLQDEYEKLVQGLHSADIL 299
Query: 833 ARETDVVLANPVLPDEIL 850
+ + + PVLP ++L
Sbjct: 300 TDQEEPFVETPVLPQDLL 317
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/120 (56%), Positives = 83/120 (69%), Gaps = 2/120 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQY YM ++KK LD G+ +LEMPSGTGKT SLLSL +AY
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYNYMCDIKKTLDVGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+P + K++YCSRT+ EIEK + EL L DY K + + GL L+SRKNLC+H E
Sbjct: 61 MHYP-EHRKIIYCSRTMSEIEKALVELENLMDYRTKELGYQEDFRGLGLTSRKNLCLHPE 119
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D S++RNYG +LV+ A + PDG+V FF SYLY+ES+V+ W GI+D + K
Sbjct: 506 ISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFPSYLYMESIVSMWQTMGILDEVWK 565
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 566 HKLILVETPDAQETSLALETYRKACSNGRGAILLSVA---RGKVSEGI 610
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 65/88 (73%), Gaps = 2/88 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYG+M+ AD+RF+R KRS+LPKWI + L+D NLST+ A+ +K++LR MAQ
Sbjct: 669 VLRGKDDYGVMVLADRRFSR--KRSQLPKWIAQGLSDADLNLSTDMAISNTKQFLRTMAQ 726
Query: 909 PFTREDMLGVALLSLDQLLEKEHARAEE 936
P +D GV++ S + L++ +++R ++
Sbjct: 727 PTDPKDQEGVSVWSYEDLIKHQNSRKDQ 754
>gi|325186971|emb|CCA21515.1| predicted protein putative [Albugo laibachii Nc14]
Length = 801
Score = 366 bits (940), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 188/437 (43%), Positives = 272/437 (62%), Gaps = 69/437 (15%)
Query: 6 DGKIVDGRCHSLTSSSVRDR------HKAGEN--IPVCDFYEKFDAVGREAPL-APGVYS 56
DG+ VD +C +T+S VR R +A N I +C +YE+++A ++ L PGVYS
Sbjct: 128 DGESVDSQCRKMTASWVRARAIETPIEQAVSNNGIDLCSYYEQYEARKQDQQLLPPGVYS 187
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
+ LK +G+E G CPYFL R + A ++VY+Y Y+LDPK++ +VS+ + S++VFDEA
Sbjct: 188 LDDLKRLGKEKGWCPYFLTRHVVNFADVIVYNYQYMLDPKVSQLVSRAFEKESIIVFDEA 247
Query: 117 HNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR--- 173
HNIDNVC+++LSV +NRR++++A N+ ++ ++ +K+AD ++L EY RLVEGLR
Sbjct: 248 HNIDNVCIEALSVDLNRRSLDRASRNLGSISTQVQRLKQADRSRLDAEYRRLVEGLRASN 307
Query: 174 -----------DAQSARET-DVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLK 221
QS T D++ +NPVLPD++L+E +PGNIR AEHF+ F++R IEYL+
Sbjct: 308 NILAPTYQNRATGQSIDTTNDILTSNPVLPDDVLEEAIPGNIRRAEHFIAFMRRLIEYLR 367
Query: 222 TRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATF 281
TRLRV V E+P FL HL QV+
Sbjct: 368 TRLRVGNVESETPQAFL-----------------------HHLN------QVIS------ 392
Query: 282 LKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAII 341
+E KP++FC RL SLLRTLEIT L +F +L + + ATL+++Y GF +I
Sbjct: 393 ---------METKPMKFCYTRLNSLLRTLEITKLEEFQALTDVANFATLLATYADGFMLI 443
Query: 342 VEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVI 401
V+P D A P+PVL+ CLD+SLAI+PV +RF +V+ITSGTLSP+D+YP++LNF PVI
Sbjct: 444 VDPL-DNASGAPDPVLHLACLDASLAIRPVLERFSSVIITSGTLSPIDLYPRLLNFSPVI 502
Query: 402 MHSFSMTLARPCLLPMV 418
S M++ R C+ P+
Sbjct: 503 RESLPMSVYRSCICPLT 519
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 140/215 (65%), Gaps = 24/215 (11%)
Query: 661 DGKIVDGRCHSLTSSSVRDR------HKAGEN--IPVCDFYEKFDAVGREAPL-APGVYS 711
DG+ VD +C +T+S VR R +A N I +C +YE+++A ++ L PGVYS
Sbjct: 128 DGESVDSQCRKMTASWVRARAIETPIEQAVSNNGIDLCSYYEQYEARKQDQQLLPPGVYS 187
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
+ LK +G+E G CPYFL R + A ++VY+Y Y+LDPK++ +VS+ + S++VFDEA
Sbjct: 188 LDDLKRLGKEKGWCPYFLTRHVVNFADVIVYNYQYMLDPKVSQLVSRAFEKESIIVFDEA 247
Query: 772 HNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR--- 828
HNIDNVC+++LSV +NRR++++A N+ ++ ++ +K+AD ++L EY RLVEGLR
Sbjct: 248 HNIDNVCIEALSVDLNRRSLDRASRNLGSISTQVQRLKQADRSRLDAEYRRLVEGLRASN 307
Query: 829 -----------DAQSARET-DVVLANPVLPDEILQ 851
QS T D++ +NPVLPD++L+
Sbjct: 308 NILAPTYQNRATGQSIDTTNDILTSNPVLPDDVLE 342
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 67/121 (55%), Positives = 86/121 (71%), Gaps = 2/121 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + ID L V FPY+ +Y EQ YM ELK+ALDA GHC+LEMP+GTGKT SLL+L++AY
Sbjct: 1 MKVDIDGLQVLFPYDRMYAEQLQYMRELKRALDAHGHCMLEMPTGTGKTISLLALVLAYR 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY--YIKHNEEINMTGLVLSSRKNLCIHS 541
+AHP KL+YC+RTV E+ K VEEL L +Y I E +T + LSSR+N+CIH
Sbjct: 61 HAHPSTCGKLVYCTRTVTEMAKCVEELKSLMEYRTQILSTEATQITAVCLSSRRNMCIHE 120
Query: 542 E 542
+
Sbjct: 121 K 121
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Query: 551 VIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDG 610
VIR + V +C+ P + + + + + F+ RDD+SV+RNYG LL+++A PDG
Sbjct: 501 VIRESLPMSVYRSCICP-LTITRGSDQMPVSTKFDLRDDLSVVRNYGTLLLEMAAHCPDG 559
Query: 611 VVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+VCFF SYLY+E ++ W G++ + + KLLFIET D +++
Sbjct: 560 MVCFFPSYLYMEKIIGQWDQLGVLKRVLQFKLLFIETTDIVET 602
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 9/102 (8%)
Query: 813 SAKLREEYARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFA 867
S KLR ARL E LR RE D + + + +L+ KTDYG+++FAD R+
Sbjct: 655 SHKLR---ARL-EYLRYTHQIREADFLTFDALRQAAQCAGRVLRSKTDYGLILFADSRYN 710
Query: 868 RSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQP 909
R+DKRSKLP WI++++ ++ NLS + AV L+KR+L MAQP
Sbjct: 711 RADKRSKLPPWIKQFMVESYLNLSVDMAVHLAKRYLALMAQP 752
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 43/61 (70%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQ 598
+ ++F+ RDD+SV+RNYG LL+++A PDG+VCFF SYLY+E + D + V++ Q
Sbjct: 529 VSTKFDLRDDLSVVRNYGTLLLEMAAHCPDGMVCFFPSYLYMEKIIGQWDQLGVLKRVLQ 588
Query: 599 L 599
Sbjct: 589 F 589
>gi|422296028|gb|EKU23327.1| DNA excision repair protein ERCC-2, partial [Nannochloropsis
gaditana CCMP526]
Length = 937
Score = 366 bits (940), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 190/430 (44%), Positives = 263/430 (61%), Gaps = 56/430 (13%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E D + VD C S+T+S VR R N+ +C +YE+++ G +A +A G+YS+ L
Sbjct: 122 VMEESDREAVDSACRSMTASWVRQRGATSANVELCQYYEEYEKNGTDAGIAHGIYSLDDL 181
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE+G++ G CPYFLAR I HA I++Y+Y Y+LDPK+A +VSKEL S+VVFDEAHNID
Sbjct: 182 KELGKDRGWCPYFLARHIINHANILIYNYQYVLDPKVAGLVSKELEAESIVVFDEAHNID 241
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL-------- 172
NVC+++LSV ++ R+++KA + L + +MK+ D+ KL EEY RLV GL
Sbjct: 242 NVCIEALSVELDERSLDKATRCLGKLSTEVSKMKQKDANKLNEEYQRLVRGLAESGALGG 301
Query: 173 --RDAQSARETDVVLANPV--LPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQ 228
+A D +LANPV LPD + QE VPGNIR AEHF+ F+K+ +E+LKT LRV
Sbjct: 302 AAGAGSAASPADAMLANPVPRLPDALAQEAVPGNIRRAEHFLTFMKKVVEHLKTLLRVDS 361
Query: 229 VVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSK 288
++SP FL + +K A
Sbjct: 362 TQKQSPLAFLHYLQTKTA------------------------------------------ 379
Query: 289 VCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDK 348
+E KPLRF RL SLLRTLE+T+L +F+ L + ATLV++Y +GF +I EP
Sbjct: 380 --LEVKPLRFTYSRLNSLLRTLEVTHLDEFNPLQDVADFATLVATYAEGFTVITEPQGSS 437
Query: 349 APTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMT 408
P + PVL CLD+SLAIKPVF+RF++V+ITSGTLSPLD+YP +L+F PV+ S M+
Sbjct: 438 IPGLRQPVLQLSCLDASLAIKPVFERFKSVIITSGTLSPLDLYPTLLSFTPVVRQSMDMS 497
Query: 409 LARPCLLPMV 418
+ R + P+V
Sbjct: 498 MFRKSICPLV 507
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/208 (46%), Positives = 136/208 (65%), Gaps = 12/208 (5%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
V +E D + VD C S+T+S VR R N+ +C +YE+++ G +A +A G+YS+ L
Sbjct: 122 VMEESDREAVDSACRSMTASWVRQRGATSANVELCQYYEEYEKNGTDAGIAHGIYSLDDL 181
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE+G++ G CPYFLAR I HA I++Y+Y Y+LDPK+A +VSKEL S+VVFDEAHNID
Sbjct: 182 KELGKDRGWCPYFLARHIINHANILIYNYQYVLDPKVAGLVSKELEAESIVVFDEAHNID 241
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL-------- 827
NVC+++LSV ++ R+++KA + L + +MK+ D+ KL EEY RLV GL
Sbjct: 242 NVCIEALSVELDERSLDKATRCLGKLSTEVSKMKQKDANKLNEEYQRLVRGLAESGALGG 301
Query: 828 --RDAQSARETDVVLANPV--LPDEILQ 851
+A D +LANPV LPD + Q
Sbjct: 302 AAGAGSAASPADAMLANPVPRLPDALAQ 329
Score = 143 bits (360), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 88/115 (76%), Gaps = 3/115 (2%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
+D L +FFPY+ +Y EQY YM+ELK+ALDAKGHCLLEMP+GTGKT L+SLI +Y AHP
Sbjct: 6 LDGLDLFFPYDRLYEEQYNYMLELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFAHP 65
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYIK--HNEEINMTGLVLSSRKNLCIH 540
+V KL+YC+RTVPE+ K VEE+ ++ DY +K E + + LSSR+NLCIH
Sbjct: 66 -EVGKLIYCTRTVPEMVKCVEEVRKVIDYRVKCIGAEGGKVLAVCLSSRRNLCIH 119
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 55/70 (78%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
FE RDD SV R+YG+LLV+IA VPDGVVCFFTSY Y+E VV W D GI+ + +RKL+
Sbjct: 521 FEKRDDPSVTRDYGELLVEIATHVPDGVVCFFTSYSYMERVVQEWEDGGILRQILERKLI 580
Query: 644 FIETQDALDS 653
FIET+D +++
Sbjct: 581 FIETKDVVET 590
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 51/72 (70%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+MIFAD R+ R DKR+KLPKWI + + N +LST +A+ +R+L++MAQ
Sbjct: 680 VIRSKLDYGLMIFADSRYNRYDKRTKLPKWILDCMGTNHLDLSTGDAMDKVRRFLKEMAQ 739
Query: 909 PFTREDMLGVAL 920
P +++ + L
Sbjct: 740 PMDGKELQKILL 751
>gi|3850576|gb|AAC72116.1| Strong similarity to gb|U04968 nucleotide excision repair protein
(ERCC2) from Cricetulus grisseus [Arabidopsis thaliana]
Length = 735
Score = 365 bits (938), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 186/430 (43%), Positives = 253/430 (58%), Gaps = 59/430 (13%)
Query: 2 SKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLK 61
++ RD VD C T+S VR N+ +CDF+E ++ A L PGVY++ L+
Sbjct: 124 AENRDS--VDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDLR 181
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121
G+ G CPYFLAR I A ++VYSY YLLDPK+A +SKEL + SVVVFDEAHNIDN
Sbjct: 182 AFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNIDN 241
Query: 122 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKE-------------MKEADSAKLREEYARL 168
VC+++LSV + R T+E A N+ + + K D+ +LR EY RL
Sbjct: 242 VCIEALSVSVRRVTLEGANRNLNKIRQEIDSSYYIIEIVQLVGRFKATDAGRLRAEYNRL 301
Query: 169 VEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQ 228
VEGL D LANP LP +IL+E VPGNIR AEHFV L+R ++YL RL +
Sbjct: 302 VEGLALRGDLSGGDQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTEN 361
Query: 229 VVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSK 288
V +ESP +F+ ++S+
Sbjct: 362 VEKESPVSFVSSLNSQAG------------------------------------------ 379
Query: 289 VCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDK 348
IE+K L+FC +RL SL+ TLEIT+ +F + + ATLV +Y +GF+II+EP+ ++
Sbjct: 380 --IEQKTLKFCYDRLQSLMLTLEITDTDEFLPIQTVCDFATLVGTYARGFSIIIEPYDER 437
Query: 349 APTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMT 408
P +P+P+L C D+SLAIKPVFDRFQ+VVITSGTLSP+D+YP++LNF PV+ SF M+
Sbjct: 438 MPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFTPVVSRSFKMS 497
Query: 409 LARPCLLPMV 418
+ R C+ PMV
Sbjct: 498 MTRDCICPMV 507
Score = 175 bits (444), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 120/208 (57%), Gaps = 15/208 (7%)
Query: 657 SKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLK 716
++ RD VD C T+S VR N+ +CDF+E ++ A L PGVY++ L+
Sbjct: 124 AENRDS--VDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDLR 181
Query: 717 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 776
G+ G CPYFLAR I A ++VYSY YLLDPK+A +SKEL + SVVVFDEAHNIDN
Sbjct: 182 AFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNIDN 241
Query: 777 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKE-------------MKEADSAKLREEYARL 823
VC+++LSV + R T+E A N+ + + K D+ +LR EY RL
Sbjct: 242 VCIEALSVSVRRVTLEGANRNLNKIRQEIDSSYYIIEIVQLVGRFKATDAGRLRAEYNRL 301
Query: 824 VEGLRDAQSARETDVVLANPVLPDEILQ 851
VEGL D LANP LP +IL+
Sbjct: 302 VEGLALRGDLSGGDQWLANPALPHDILK 329
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 94/130 (72%), Gaps = 4/130 (3%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M I+D+ V+FPY+ IYPEQY YMVELK+ALDAKGHCLLEMP+GTGKT +LLSLI +Y
Sbjct: 1 MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+ P KL+YC+RTV E+EK + EL L DY ++H + + L LSSRKNLC++++
Sbjct: 61 LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTK 120
Query: 543 F---ETRDDI 549
E RD +
Sbjct: 121 VLAAENRDSV 130
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ + L + + F+ R D V+RNYG+LLV++ +VPDGVVCFF SY Y++
Sbjct: 502 CICP-MVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFVSYSYMDG 560
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
++A+W + GI+ + ++KL+FIETQD +++
Sbjct: 561 IIATWNETGILKEIMQQKLVFIETQDVVET 590
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSK 900
+++ K DYG+MIFADKR++R DKRSKLP WI +L D NLST+ A+ +++
Sbjct: 680 VIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIAR 731
>gi|50293749|ref|XP_449286.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528599|emb|CAG62260.1| unnamed protein product [Candida glabrata]
Length = 775
Score = 365 bits (938), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 205/507 (40%), Positives = 292/507 (57%), Gaps = 77/507 (15%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDR--HKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKER G IVD +C +T+ + + N+ +CD++E + E L GV+S
Sbjct: 120 VSKERSGTIVDEKCRRMTNGQAKKKLEEDPEANVELCDYHENLYQLDVENYLPNGVFSFE 179
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
KL + + LCPYF+ R+ I I++YSYHYLLDPKIA VS E+++ S+V+FDEAHN
Sbjct: 180 KLIKYCEQKVLCPYFIVRRMISMCNIIIYSYHYLLDPKIAERVSHEVSKDSIVIFDEAHN 239
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + + KA TL + E ++ D+ KL++EY +LV+GL
Sbjct: 240 IDNVCIESLSLDLTNDVLRKATKGANTLNERIAEARQVDARKLQDEYEKLVQGLHAEDIM 299
Query: 179 RET-DVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATF 237
+T + + PVLP ++L+E +PGNIR AEHF+ FLKR IEYLKTR++V V+ E+P +F
Sbjct: 300 TQTEEPFVETPVLPQDLLKEAIPGNIRRAEHFISFLKRLIEYLKTRMKVLHVISETPRSF 359
Query: 238 LKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLR 297
L +HLK TF I+RKPLR
Sbjct: 360 L-----------------------QHLKQ------------LTF---------IDRKPLR 375
Query: 298 FCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVL 357
FC+ERL+ L+RTLEI ++ +F++L I ATLVS+Y GF +I+EP+ + VPNP++
Sbjct: 376 FCSERLSLLVRTLEIEDVEEFAALKDIATFATLVSTYEDGFTLIIEPYEIENAAVPNPIM 435
Query: 358 YFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM 417
F CLD+S+AIKPVF+RF +V+ITSGT+SPLDMYP++LNF+ V+ S+SM+LA+ LPM
Sbjct: 436 RFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFETVLQKSYSMSLAKKSFLPM 495
Query: 418 ----------------------VRENYAMGLM------IDDLPVFFPYEYIYPEQYAYMV 449
+ NY L+ D + VFFP Y+Y E M
Sbjct: 496 IVTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFP-SYLYMESIVSMW 554
Query: 450 ELKKALD-AKGHCLLEMPSGTGKTTSL 475
+ LD H L+ + + + TSL
Sbjct: 555 QTMGILDEVWKHKLILVETPDAQETSL 581
Score = 159 bits (403), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 122/199 (61%), Gaps = 3/199 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDR--HKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
VSKER G IVD +C +T+ + + N+ +CD++E + E L GV+S
Sbjct: 120 VSKERSGTIVDEKCRRMTNGQAKKKLEEDPEANVELCDYHENLYQLDVENYLPNGVFSFE 179
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
KL + + LCPYF+ R+ I I++YSYHYLLDPKIA VS E+++ S+V+FDEAHN
Sbjct: 180 KLIKYCEQKVLCPYFIVRRMISMCNIIIYSYHYLLDPKIAERVSHEVSKDSIVIFDEAHN 239
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC++SLS+ + + KA TL + E ++ D+ KL++EY +LV+GL
Sbjct: 240 IDNVCIESLSLDLTNDVLRKATKGANTLNERIAEARQVDARKLQDEYEKLVQGLHAEDIM 299
Query: 834 RET-DVVLANPVLPDEILQ 851
+T + + PVLP ++L+
Sbjct: 300 TQTEEPFVETPVLPQDLLK 318
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/122 (57%), Positives = 84/122 (68%), Gaps = 6/122 (4%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQY YM ++K+ LDA G+ +LEMPSGTGKT SLLSL +AY
Sbjct: 1 MKFFIDDLPVLFPYPKIYPEQYQYMRDIKRTLDAGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH---NEEINMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL L DY K EE GL L+SRKNLC+H
Sbjct: 61 MHYP-EHRKIIYCSRTMSEIEKALVELENLMDYRAKELGFKEEFR--GLGLTSRKNLCLH 117
Query: 541 SE 542
E
Sbjct: 118 PE 119
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D S++RNYG +LV+ A + PDG+V FF SYLY+ES+V+ W GI+D + K
Sbjct: 506 ISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFPSYLYMESIVSMWQTMGILDEVWK 565
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 566 HKLILVETPDAQETSLALETYRKACSNGRGAILLSVA---RGKVSEGI 610
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 61/83 (73%), Gaps = 2/83 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYG+MI AD+RF+R KR++LPKWI + L++ NLST+ A+ +K++LR MAQ
Sbjct: 669 VLRGKDDYGVMILADRRFSR--KRNQLPKWIAQGLSEADLNLSTDMAISNAKQFLRTMAQ 726
Query: 909 PFTREDMLGVALLSLDQLLEKEH 931
P +D GV++ S + L++ ++
Sbjct: 727 PTDPKDQQGVSVWSYNDLIKYQN 749
>gi|444320679|ref|XP_004180996.1| hypothetical protein TBLA_0E04230 [Tetrapisispora blattae CBS 6284]
gi|387514039|emb|CCH61477.1| hypothetical protein TBLA_0E04230 [Tetrapisispora blattae CBS 6284]
Length = 779
Score = 365 bits (938), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 212/511 (41%), Positives = 295/511 (57%), Gaps = 85/511 (16%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP-----VCDFYEKFDAVGREAPLAPGVY 55
+SKE+ G +VD +C LT+ + + EN P +CD++E + E L GV+
Sbjct: 120 ISKEKKGTVVDEKCRRLTNGQNK---RILENDPDAKVELCDYHENLYKLDVENYLPNGVF 176
Query: 56 SITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDE 115
S KL E LCPYF+ R+ I I++YSYHYLLDPKIA VSKE+++ S+V+FDE
Sbjct: 177 SFEKLIRYCEERTLCPYFIVRRMISMCNIIIYSYHYLLDPKIAERVSKEVSKDSIVIFDE 236
Query: 116 AHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR-- 173
AHNIDNVC++SLS+ + + KA TL ++E++E DS+KL++EY +LV+GL
Sbjct: 237 AHNIDNVCIESLSLDLTNDVLRKASKGATTLAEKIEEVREIDSSKLQDEYEKLVKGLHAS 296
Query: 174 DAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQES 233
D +A E VV PVL +++L E +PGNIR AEHFV FLKR IEYLKTR++V V+ E+
Sbjct: 297 DILNAEEEPVV-ETPVLSEDLLTEAIPGNIRRAEHFVAFLKRLIEYLKTRMKVLHVISET 355
Query: 234 PATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIER 293
P +FL +HLK TF I+R
Sbjct: 356 PKSFL-----------------------QHLKQ------------LTF---------IDR 371
Query: 294 KPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVP 353
KPLRFC+ERL+ L+RTLE+T + DF++L I ATL+S+Y +GF +I+EP+ + VP
Sbjct: 372 KPLRFCSERLSLLVRTLEVTEIEDFNALKDIATFATLISTYEEGFLLIIEPYEIENAAVP 431
Query: 354 NPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPC 413
NP++ F CLD+S+AIKPVF+RF +V+ITSGT+SPLDMYP++LNF + S+SMTL +
Sbjct: 432 NPIMRFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFTTTLQKSYSMTLTKKS 491
Query: 414 LLPM----------------------VRENYAMGLM------IDDLPVFFPYEYIYPEQY 445
LPM + NY L+ D + VFFP Y+Y E
Sbjct: 492 FLPMIITKGSDQVAISSRFEIRSDPSIVRNYGSMLVEFAKITPDGMVVFFP-SYLYMESI 550
Query: 446 AYMVELKKALD-AKGHCLLEMPSGTGKTTSL 475
M + LD H L+ + + + TSL
Sbjct: 551 ISMWQTMGILDEVWKHKLILVETPDAQETSL 581
Score = 159 bits (403), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 88/202 (43%), Positives = 127/202 (62%), Gaps = 11/202 (5%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP-----VCDFYEKFDAVGREAPLAPGVY 710
+SKE+ G +VD +C LT+ + + EN P +CD++E + E L GV+
Sbjct: 120 ISKEKKGTVVDEKCRRLTNGQNK---RILENDPDAKVELCDYHENLYKLDVENYLPNGVF 176
Query: 711 SITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDE 770
S KL E LCPYF+ R+ I I++YSYHYLLDPKIA VSKE+++ S+V+FDE
Sbjct: 177 SFEKLIRYCEERTLCPYFIVRRMISMCNIIIYSYHYLLDPKIAERVSKEVSKDSIVIFDE 236
Query: 771 AHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR-- 828
AHNIDNVC++SLS+ + + KA TL ++E++E DS+KL++EY +LV+GL
Sbjct: 237 AHNIDNVCIESLSLDLTNDVLRKASKGATTLAEKIEEVREIDSSKLQDEYEKLVKGLHAS 296
Query: 829 DAQSARETDVVLANPVLPDEIL 850
D +A E VV PVL +++L
Sbjct: 297 DILNAEEEPVV-ETPVLSEDLL 317
Score = 132 bits (332), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 86/132 (65%), Gaps = 6/132 (4%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQY YM ++KK LD G+ +LEMPSGTGKT SLLSL +AY
Sbjct: 1 MKFFIDDLPVLFPYPKIYPEQYQYMCDIKKTLDVGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH---NEEINMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL L DY K EE GL L+SRKNLC+H
Sbjct: 61 MHYP-EHRKIIYCSRTMSEIEKALVELENLMDYREKELGVKEEFR--GLGLTSRKNLCLH 117
Query: 541 SEFETRDDISVI 552
+ +V+
Sbjct: 118 PQISKEKKGTVV 129
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R D S++RNYG +LV+ A + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 506 ISSRFEIRSDPSIVRNYGSMLVEFAKITPDGMVVFFPSYLYMESIISMWQTMGILDEVWK 565
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 566 HKLILVETPDAQETSLALETYRKACSNGRGAILLSVA---RGKVSEGI 610
Score = 79.3 bits (194), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 72/112 (64%), Gaps = 8/112 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF+R +R++L
Sbjct: 637 ARL-EFLRENYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFSR--RRNQL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLL 927
PKWI + L+D NLST+ A+ +K++LR MAQP +D GV++ + ++L+
Sbjct: 694 PKWISQGLSDADLNLSTDMAIANTKQFLRAMAQPTDPKDQEGVSVWNNEELV 745
>gi|348678980|gb|EGZ18797.1| hypothetical protein PHYSODRAFT_354695 [Phytophthora sojae]
Length = 791
Score = 365 bits (937), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 188/446 (42%), Positives = 269/446 (60%), Gaps = 78/446 (17%)
Query: 6 DGKIVDGRCHSLTSSSVR-----------------DRHKAGENIPVCDFYEKFDA-VGRE 47
DG+ VDG+C +T+S VR D + + C FYE +DA +
Sbjct: 126 DGEDVDGQCRKMTASWVRARAAKAREAAASGDVPMDGGEQVREVETCSFYENYDARKSDD 185
Query: 48 APLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELAR 107
L PG+YS+ LKE+G + G CPYFL R + A +VVY+Y Y+LDPK++ +VS+ +
Sbjct: 186 TVLPPGIYSVDDLKEIGAKKGWCPYFLTRYVVTFADVVVYNYQYMLDPKVSQLVSRSFEK 245
Query: 108 SSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYAR 167
S+VVFDEAHNIDNVC+++LSV ++RR++++A N+ TL + ++K+AD A+L EY R
Sbjct: 246 ESIVVFDEAHNIDNVCIEALSVDLDRRSLDRASRNLTTLSSQVNKLKQADKARLDAEYRR 305
Query: 168 LVEGLRDAQSA---------------RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGF 212
LV+GLR + + D+++ANPVLPD++L E +PGNIR AEHFV F
Sbjct: 306 LVDGLRSSNAVVAPSYSDPATNRNIDTSNDIMIANPVLPDDVLDEAIPGNIRRAEHFVAF 365
Query: 213 LKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQ 272
++R IEYL+ R+RV+QV E+P FL HL
Sbjct: 366 MRRLIEYLRQRIRVRQVESETPQAFL-----------------------HHLH------- 395
Query: 273 VVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVS 332
+ +E KP++FC RL SLLRTLE+TNL ++++L + ATLV+
Sbjct: 396 --------------QAINMEIKPMKFCYTRLNSLLRTLEVTNLEEYNALTDVADFATLVA 441
Query: 333 SYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYP 392
+Y +GF +I+EPF D A V +PVL CLD+SLAI+PVF+RF +V+ITSGTLSP+D+YP
Sbjct: 442 TYAEGFMLIIEPF-DSASGVHDPVLQLSCLDASLAIRPVFERFSSVIITSGTLSPIDLYP 500
Query: 393 KILNFQPVIMHSFSMTLARPCLLPMV 418
++LNF PVI S M++ R + P+V
Sbjct: 501 RLLNFNPVIRESLPMSVYRSSICPLV 526
Score = 179 bits (453), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 135/223 (60%), Gaps = 33/223 (14%)
Query: 661 DGKIVDGRCHSLTSSSVR-----------------DRHKAGENIPVCDFYEKFDA-VGRE 702
DG+ VDG+C +T+S VR D + + C FYE +DA +
Sbjct: 126 DGEDVDGQCRKMTASWVRARAAKAREAAASGDVPMDGGEQVREVETCSFYENYDARKSDD 185
Query: 703 APLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELAR 762
L PG+YS+ LKE+G + G CPYFL R + A +VVY+Y Y+LDPK++ +VS+ +
Sbjct: 186 TVLPPGIYSVDDLKEIGAKKGWCPYFLTRYVVTFADVVVYNYQYMLDPKVSQLVSRSFEK 245
Query: 763 SSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYAR 822
S+VVFDEAHNIDNVC+++LSV ++RR++++A N+ TL + ++K+AD A+L EY R
Sbjct: 246 ESIVVFDEAHNIDNVCIEALSVDLDRRSLDRASRNLTTLSSQVNKLKQADKARLDAEYRR 305
Query: 823 LVEGLRDAQSA---------------RETDVVLANPVLPDEIL 850
LV+GLR + + D+++ANPVLPD++L
Sbjct: 306 LVDGLRSSNAVVAPSYSDPATNRNIDTSNDIMIANPVLPDDVL 348
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 88/119 (73%), Gaps = 3/119 (2%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + ID L V FPYE +Y EQ YM ELK+ALDA+GHC+LEMP+GTGKT SLL+L++AY
Sbjct: 1 MKVDIDGLEVLFPYERMYSEQLQYMRELKRALDAQGHCMLEMPTGTGKTVSLLALVLAYK 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH--NEEINMTGLVLSSRKNLCIH 540
+AHP KL+YC+RTVPE+ K VEE+ +L Y H ++ +T + LSSR+N+C+H
Sbjct: 61 HAHPT-AGKLVYCTRTVPEMAKCVEEIKKLAQYRTAHYGADKAQLTAVCLSSRRNMCVH 118
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 52/70 (74%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
F+ RDD+SV+RNYG LL+++A PDG+VCFF SYLY+E ++ W G++ + KLL
Sbjct: 540 FDLRDDMSVVRNYGTLLLEMASCTPDGMVCFFPSYLYMEKIIGQWDSLGVLKRVLSSKLL 599
Query: 644 FIETQDALDS 653
FIET+D +++
Sbjct: 600 FIETKDIVET 609
Score = 79.7 bits (195), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 1/148 (0%)
Query: 791 IEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEIL 850
++ G L G + +++ + R EY R +R+ D + +L
Sbjct: 642 FDRHYGRAVILFGIPFQYTLSNTLRARLEYLRYTHQIREGDFL-TFDALRQAAQCAGRVL 700
Query: 851 QGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPF 910
+ KTDYG++IFAD R+ R+DKR+KLP WI ++L D+ NLS + AV ++K++L MAQP
Sbjct: 701 RSKTDYGLVIFADSRYNRADKRTKLPPWITQFLVDSHLNLSVDMAVFMAKKYLSLMAQPV 760
Query: 911 TREDMLGVALLSLDQLLEKEHARAEEEE 938
+ LL + + + +E+E
Sbjct: 761 DESTNVNSILLDAEGVAKWLGKHPKEDE 788
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 42/56 (75%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIR 594
+ ++F+ RDD+SV+RNYG LL+++A PDG+VCFF SYLY+E + D + V++
Sbjct: 536 VSTKFDLRDDMSVVRNYGTLLLEMASCTPDGMVCFFPSYLYMEKIIGQWDSLGVLK 591
>gi|367008340|ref|XP_003678670.1| hypothetical protein TDEL_0A01270 [Torulaspora delbrueckii]
gi|359746327|emb|CCE89459.1| hypothetical protein TDEL_0A01270 [Torulaspora delbrueckii]
Length = 775
Score = 363 bits (933), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 202/507 (39%), Positives = 292/507 (57%), Gaps = 77/507 (15%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGEN--IPVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKER G +VD +C +T+ + + + + + +C+++E + E L GVYS
Sbjct: 120 VSKERKGTVVDEKCRRMTNGQAKQKLETDPDSKVELCEYHENLYNIEVEDYLPKGVYSFE 179
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+L + E LCPYF+ R+ I I++YSYHYLLDPKIA VS+E+++ +V+FDEAHN
Sbjct: 180 RLIKYCEERKLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSREMSKDGIVIFDEAHN 239
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + +++A LE ++E++ D+ KL++EY +LV+GL A+
Sbjct: 240 IDNVCIESLSLDLTNDVLKRATKGANALENRIEEVRRVDAQKLQDEYDKLVQGLHTAEIL 299
Query: 179 R-ETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATF 237
E + L PVL ++L E +PGNIR AEHFV FLKR IEYLKTR++V V+ E+P +F
Sbjct: 300 EPEEESALETPVLSQDLLTEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSF 359
Query: 238 LKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLR 297
L +HLK TF I+RKPLR
Sbjct: 360 L-----------------------QHLKQ------------LTF---------IDRKPLR 375
Query: 298 FCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVL 357
FC+ERL+ L+RTLE++ + DF +L I ATL+S+Y GF +I+EP+ + VPNP++
Sbjct: 376 FCSERLSLLVRTLEVSEIEDFMALKDIATFATLISTYETGFLLIIEPYEIENAAVPNPIM 435
Query: 358 YFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM 417
F CLD+S+AIKPVF+RF +V+ITSGT+SPLDMYP++LNF V+ S++MTLA+ LPM
Sbjct: 436 RFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFNTVLQKSYAMTLAKKSFLPM 495
Query: 418 ----------------------VRENYAMGLM------IDDLPVFFPYEYIYPEQYAYMV 449
+ NY L+ D + VFFP Y+Y E M
Sbjct: 496 IVTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFSKITPDGMVVFFP-SYLYMESIISMW 554
Query: 450 ELKKALD-AKGHCLLEMPSGTGKTTSL 475
+ LD H L+ + + + TSL
Sbjct: 555 QTMGILDEVWKHKLILVETPDAQETSL 581
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 124/198 (62%), Gaps = 3/198 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGEN--IPVCDFYEKFDAVGREAPLAPGVYSIT 713
VSKER G +VD +C +T+ + + + + + +C+++E + E L GVYS
Sbjct: 120 VSKERKGTVVDEKCRRMTNGQAKQKLETDPDSKVELCEYHENLYNIEVEDYLPKGVYSFE 179
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
+L + E LCPYF+ R+ I I++YSYHYLLDPKIA VS+E+++ +V+FDEAHN
Sbjct: 180 RLIKYCEERKLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSREMSKDGIVIFDEAHN 239
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC++SLS+ + +++A LE ++E++ D+ KL++EY +LV+GL A+
Sbjct: 240 IDNVCIESLSLDLTNDVLKRATKGANALENRIEEVRRVDAQKLQDEYDKLVQGLHTAEIL 299
Query: 834 R-ETDVVLANPVLPDEIL 850
E + L PVL ++L
Sbjct: 300 EPEEESALETPVLSQDLL 317
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/118 (56%), Positives = 82/118 (69%), Gaps = 2/118 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQY YM ++KK LDA G+ +LEMPSGTGKT SLLSL +AY
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYKYMCDIKKTLDAGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL L DY + + GL L+SRKNLC+H
Sbjct: 61 LHYP-EHRKIIYCSRTMSEIEKALVELENLMDYRSRELGVHEDFRGLGLTSRKNLCLH 117
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D S++RNYG +LV+ + + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 506 ISSRFEIRNDPSIVRNYGSMLVEFSKITPDGMVVFFPSYLYMESIISMWQTMGILDEVWK 565
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 566 HKLILVETPDAQETSLALETYRKACSNGRGAILLSVA---RGKVSEGI 610
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 8/105 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF+R KR++L
Sbjct: 637 ARL-EFLRENYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFSR--KRNQL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVAL 920
PKWI + L+D NLST+ A+ +K++LR MAQP +D GV++
Sbjct: 694 PKWISQGLSDADLNLSTDMAIANAKQFLRTMAQPTDPKDQEGVSV 738
>gi|410076214|ref|XP_003955689.1| hypothetical protein KAFR_0B02570 [Kazachstania africana CBS 2517]
gi|372462272|emb|CCF56554.1| hypothetical protein KAFR_0B02570 [Kazachstania africana CBS 2517]
Length = 779
Score = 363 bits (932), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 208/511 (40%), Positives = 295/511 (57%), Gaps = 84/511 (16%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGEN-----IPVCDFYEKFDAVGREAPLAPGVY 55
VSKER G +VD +C LT+ ++ K EN +C+++E + E L GV+
Sbjct: 120 VSKERKGTVVDEKCRRLTNGV--NKRKLQENPDATDAELCEYHENLYDMEVENYLPKGVF 177
Query: 56 SITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDE 115
S KL + E +CPYF+ R+ I I+VYSYHYLLDPKIA VS E+++ S+V+FDE
Sbjct: 178 SFEKLIKYAEEKTICPYFIVRRMISLCNIIVYSYHYLLDPKIAERVSNEVSKDSIVIFDE 237
Query: 116 AHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR-- 173
AHNIDNVC++SLS+ + + +A LEG ++E+++ADS KL++EY +LV+GL
Sbjct: 238 AHNIDNVCIESLSLDLTNDVLRRATKGANALEGRIEEVRKADSKKLQDEYDKLVQGLHAD 297
Query: 174 DAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQES 233
D + E V PVL ++L+E +PGNIR AEHF+ FLKR IEYLKTR++V V+ E+
Sbjct: 298 DILTVAEEPFV-ETPVLSQDLLKEAIPGNIRRAEHFISFLKRLIEYLKTRMKVLHVISET 356
Query: 234 PATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIER 293
P +FL +HLK TF I+R
Sbjct: 357 PKSFL-----------------------QHLKQ------------LTF---------IDR 372
Query: 294 KPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVP 353
KPLRFC+ERL+ L+RTLE+T + DF++L I ATL+S+Y GF +I+EP+ + VP
Sbjct: 373 KPLRFCSERLSLLVRTLEVTEVEDFTALKDIATFATLISTYEDGFTLIIEPYEIENAAVP 432
Query: 354 NPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPC 413
NP++ F CLD+S+AIKPVF++F +V+ITSGT+SPLDMYP++LNF+ ++ S+SMTL +
Sbjct: 433 NPIMRFSCLDASIAIKPVFEKFSSVIITSGTISPLDMYPRMLNFETILQKSYSMTLDKKS 492
Query: 414 LLPM----------------------VRENYAMGLM------IDDLPVFFPYEYIYPEQY 445
LPM + NY L+ D + VFFP Y+Y E
Sbjct: 493 FLPMIITKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFP-SYLYMESI 551
Query: 446 AYMVELKKALD-AKGHCLLEMPSGTGKTTSL 475
M + LD H L+ + + + TSL
Sbjct: 552 VSMWQTMGILDEVWKHKLILVETPDAQETSL 582
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 126/203 (62%), Gaps = 10/203 (4%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGEN-----IPVCDFYEKFDAVGREAPLAPGVY 710
VSKER G +VD +C LT+ ++ K EN +C+++E + E L GV+
Sbjct: 120 VSKERKGTVVDEKCRRLTNGV--NKRKLQENPDATDAELCEYHENLYDMEVENYLPKGVF 177
Query: 711 SITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDE 770
S KL + E +CPYF+ R+ I I+VYSYHYLLDPKIA VS E+++ S+V+FDE
Sbjct: 178 SFEKLIKYAEEKTICPYFIVRRMISLCNIIVYSYHYLLDPKIAERVSNEVSKDSIVIFDE 237
Query: 771 AHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR-- 828
AHNIDNVC++SLS+ + + +A LEG ++E+++ADS KL++EY +LV+GL
Sbjct: 238 AHNIDNVCIESLSLDLTNDVLRRATKGANALEGRIEEVRKADSKKLQDEYDKLVQGLHAD 297
Query: 829 DAQSARETDVVLANPVLPDEILQ 851
D + E V PVL ++L+
Sbjct: 298 DILTVAEEPFV-ETPVLSQDLLK 319
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/120 (58%), Positives = 84/120 (70%), Gaps = 6/120 (5%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQY YM ++KK LDA G+ +LEMPSGTGKT SLLSL VAY
Sbjct: 1 MKFFIDDLPVLFPYPKIYPEQYQYMCDIKKTLDAGGNSILEMPSGTGKTVSLLSLSVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYY---IKHNEEINMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL L DY + + EE GL L+SRKNLC+H
Sbjct: 61 MHYP-EHRKIIYCSRTMSEIEKTLVELENLMDYRSRELGYVEEFR--GLGLTSRKNLCLH 117
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D S++RNYG +LV+ A + PDG+V FF SYLY+ES+V+ W GI+D + K
Sbjct: 507 ISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFPSYLYMESIVSMWQTMGILDEVWK 566
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 567 HKLILVETPDAQETSLALETYRKACSNGRGAILLSVA---RGKVSEGI 611
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 76/121 (62%), Gaps = 8/121 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF+R K+++L
Sbjct: 638 ARL-EFLRENYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFSR--KKNQL 694
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + L+D NLST+ A+ +K++LR MAQP +D GV++ SLD L + + + +
Sbjct: 695 PKWIAQGLSDADLNLSTDMAISNTKQFLRTMAQPTNPKDQEGVSVWSLDDLTKFQQSHQQ 754
Query: 936 E 936
+
Sbjct: 755 K 755
>gi|365760988|gb|EHN02666.1| Rad3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 775
Score = 363 bits (931), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 203/507 (40%), Positives = 293/507 (57%), Gaps = 77/507 (15%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDR--HKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKER G +VD +C +T+ + + N+ +C+++E + E L GV+S
Sbjct: 120 VSKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHENLYDIEVEDYLPKGVFSFE 179
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
KL + E LCPYF+ R+ I I++YSYHYLLDPKIA VS E+++ S+V+FDEAHN
Sbjct: 180 KLLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS- 177
IDNVC++SLS+ + + +A L+ + E+++ DS KL++EY +LV+GL A
Sbjct: 240 IDNVCIESLSLDLTTDALRRATRGANALDERITEVRKVDSQKLQDEYEKLVQGLHSADIL 299
Query: 178 ARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATF 237
+ + + PVLP ++L+E +PGNIR AEHFV FLKR IEYLKTR++V V+ E+P +F
Sbjct: 300 TDQEEPFVETPVLPLDLLKEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSF 359
Query: 238 LKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLR 297
L +HLK TF IERKPLR
Sbjct: 360 L-----------------------QHLKQ------------LTF---------IERKPLR 375
Query: 298 FCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVL 357
FC+ERL+ L+RTLE+ + DF++L I ATL+S+Y +GF +I+EP+ + VPNP++
Sbjct: 376 FCSERLSLLVRTLEVAEVEDFNALKDIATFATLISTYEEGFLLIIEPYEIENAAVPNPIM 435
Query: 358 YFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM 417
F CLD+S+AIKPVF++F +V+ITSGT+SPLDMYP++LNF+ V+ S++MTLA+ LPM
Sbjct: 436 RFTCLDASIAIKPVFEKFSSVIITSGTISPLDMYPRMLNFKTVLQKSYAMTLAKKSFLPM 495
Query: 418 ----------------------VRENYAMGLM------IDDLPVFFPYEYIYPEQYAYMV 449
+ NY L+ D + VFFP Y+Y E M
Sbjct: 496 IITKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFP-SYLYMESIVSMW 554
Query: 450 ELKKALD-AKGHCLLEMPSGTGKTTSL 475
+ LD H L+ + + + TSL
Sbjct: 555 QTMGILDEVWKHKLILVETPDAQETSL 581
Score = 156 bits (394), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 123/199 (61%), Gaps = 3/199 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDR--HKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
VSKER G +VD +C +T+ + + N+ +C+++E + E L GV+S
Sbjct: 120 VSKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHENLYDIEVEDYLPKGVFSFE 179
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
KL + E LCPYF+ R+ I I++YSYHYLLDPKIA VS E+++ S+V+FDEAHN
Sbjct: 180 KLLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS- 832
IDNVC++SLS+ + + +A L+ + E+++ DS KL++EY +LV+GL A
Sbjct: 240 IDNVCIESLSLDLTTDALRRATRGANALDERITEVRKVDSQKLQDEYEKLVQGLHSADIL 299
Query: 833 ARETDVVLANPVLPDEILQ 851
+ + + PVLP ++L+
Sbjct: 300 TDQEEPFVETPVLPLDLLK 318
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/120 (55%), Positives = 83/120 (69%), Gaps = 2/120 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQY YM ++K+ LD G+ +LEMPSGTGKT SLLSL +AY
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYKYMCDIKRTLDVGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+P + K++YCSRT+ EIEK + EL L DY K + + GL L+SRKNLC+H E
Sbjct: 61 MHYP-EHRKIIYCSRTMSEIEKALVELENLMDYRTKELGYQEDFRGLGLTSRKNLCLHPE 119
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D S++RNYG +LV+ A + PDG+V FF SYLY+ES+V+ W GI+D + K
Sbjct: 506 ISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFPSYLYMESIVSMWQTMGILDEVWK 565
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 566 HKLILVETPDAQETSLALETYRKACSNGRGAILLSVA---RGKVSEGI 610
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 65/88 (73%), Gaps = 2/88 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYG+M+ AD+RF+R KRS+LPKWI + L+D NLST+ A+ +K++LR MAQ
Sbjct: 669 VLRGKDDYGVMVLADRRFSR--KRSQLPKWIAQGLSDADLNLSTDMAISSTKQFLRTMAQ 726
Query: 909 PFTREDMLGVALLSLDQLLEKEHARAEE 936
P +D GV++ S D L++ ++++ ++
Sbjct: 727 PTDPKDQEGVSVWSYDDLIKHQNSKKDK 754
>gi|45201210|ref|NP_986780.1| AGR114Cp [Ashbya gossypii ATCC 10895]
gi|44986064|gb|AAS54604.1| AGR114Cp [Ashbya gossypii ATCC 10895]
gi|374110029|gb|AEY98934.1| FAGR114Cp [Ashbya gossypii FDAG1]
Length = 774
Score = 363 bits (931), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 187/421 (44%), Positives = 265/421 (62%), Gaps = 47/421 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAG--ENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKER G +VD +C +T+ R R + N+ +C+++E E L GVYS
Sbjct: 120 VSKERKGTVVDEKCRRMTNGQARARKQQDPEANVELCNYHENMYNYSPEEYLPLGVYSFE 179
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
KL + LCPYF R+ I I++YSYHYLLDPKI VS+E+++ ++V+FDEAHN
Sbjct: 180 KLIRYCEDKTLCPYFTVRRMISMCNIIIYSYHYLLDPKIEERVSREVSKDAIVIFDEAHN 239
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + + +++A L ++E++ D+ KL++EY +LV+GLR
Sbjct: 240 IDNVCIESLSLDLTKDLLKRASKGASVLGKKVEEVRRVDTKKLQDEYDKLVQGLRANDIM 299
Query: 179 RETDVVLA-NPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATF 237
E + L +PVLP +IL++ VPGNIR AEHFV FLKRFIEYLKTR++V V+ E+P +F
Sbjct: 300 EENEEPLVESPVLPADILKDAVPGNIRRAEHFVAFLKRFIEYLKTRMKVLHVISETPNSF 359
Query: 238 LKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLR 297
L +HLK TF I+RKPLR
Sbjct: 360 L-----------------------QHLKQ------------LTF---------IDRKPLR 375
Query: 298 FCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVL 357
+CAERL+ L RTLEI + +F++L I ATL+S+Y GF +I+EP+ + VPNP++
Sbjct: 376 YCAERLSLLARTLEIDEVEEFNALKDIATFATLISTYESGFLLIIEPYEIENAAVPNPIM 435
Query: 358 YFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM 417
F CLD+S+AIKPVF++F +V+ITSGT+SPLDMYP++LNF+ V+ S+SMTLA+ LPM
Sbjct: 436 RFTCLDASIAIKPVFEKFSSVIITSGTISPLDMYPRMLNFETVLQKSYSMTLAQKSFLPM 495
Query: 418 V 418
+
Sbjct: 496 I 496
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 123/199 (61%), Gaps = 3/199 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAG--ENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
VSKER G +VD +C +T+ R R + N+ +C+++E E L GVYS
Sbjct: 120 VSKERKGTVVDEKCRRMTNGQARARKQQDPEANVELCNYHENMYNYSPEEYLPLGVYSFE 179
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
KL + LCPYF R+ I I++YSYHYLLDPKI VS+E+++ ++V+FDEAHN
Sbjct: 180 KLIRYCEDKTLCPYFTVRRMISMCNIIIYSYHYLLDPKIEERVSREVSKDAIVIFDEAHN 239
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC++SLS+ + + +++A L ++E++ D+ KL++EY +LV+GLR
Sbjct: 240 IDNVCIESLSLDLTKDLLKRASKGASVLGKKVEEVRRVDTKKLQDEYDKLVQGLRANDIM 299
Query: 834 RETDVVLA-NPVLPDEILQ 851
E + L +PVLP +IL+
Sbjct: 300 EENEEPLVESPVLPADILK 318
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/120 (58%), Positives = 83/120 (69%), Gaps = 6/120 (5%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQY YM ++KK LDA G+ +LEMPSGTGKT SLL+L VAY
Sbjct: 1 MKFFIDDLPVIFPYPKIYPEQYQYMCDIKKTLDAGGNSILEMPSGTGKTVSLLALTVAY- 59
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK---HNEEINMTGLVLSSRKNLCIH 540
H + K++YCSRT+ EIEK + EL L DY K + EE GL L+SRKNLC+H
Sbjct: 60 QMHYKEHRKIIYCSRTMSEIEKALVELESLMDYRAKELQYQEEFR--GLGLTSRKNLCLH 117
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D S++RNYG +LV+ A + PDG+V FF SYLY+ES++++W GI+D + K
Sbjct: 506 ISSRFEIRNDPSIVRNYGSILVEFAKITPDGMVVFFPSYLYMESIISTWQTMGILDEVWK 565
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 566 YKLILVETPDAQETSLALETYRKACSNGRGAILLSVA---RGKISEGI 610
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 75/120 (62%), Gaps = 10/120 (8%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF+R K+++L
Sbjct: 637 ARL-EFLRENYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFSR--KKNQL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLL--EKEHAR 933
PKWI + L+D NLST+ A+ +K++LR MAQ +D GV++ ++ QLL ++E R
Sbjct: 694 PKWIAQGLSDADLNLSTDMAIANTKQFLRTMAQATDPKDHEGVSVWNIKQLLAYQQEQKR 753
>gi|303271817|ref|XP_003055270.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463244|gb|EEH60522.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 741
Score = 362 bits (930), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 185/426 (43%), Positives = 261/426 (61%), Gaps = 52/426 (12%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKA----GE--NIPVCDFYEKFDAVGREAPLAPGV 54
V++E + VD RC LT+S VR++H + GE +C F+E ++ G +A L PGV
Sbjct: 120 VAEEGSRESVDARCRQLTASWVREKHNSALASGEEPTTELCQFFEDYEREGPDAVLPPGV 179
Query: 55 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 114
Y++ L++ GR G CPYF AR I + ++VY+Y YLLDPK++++VS+EL + VVVFD
Sbjct: 180 YTLADLRQFGRTKGWCPYFTARHMIKCSNVIVYNYQYLLDPKVSSLVSRELEKECVVVFD 239
Query: 115 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRD 174
EAHNIDNVC+++LSV + ++T++ A NI L ++ K+ D +LR EY LV GL +
Sbjct: 240 EAHNIDNVCIEALSVNLRQQTLDVAGRNITALSAKIERAKQTDERRLRAEYDALVNGLAN 299
Query: 175 AQ--SARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQE 232
+ +ANPV+P +IL+E VPGNIR AEHFV F++R +EYLK RL+ QV QE
Sbjct: 300 QGVLPRGGGEDAIANPVIPADILREAVPGNIRRAEHFVAFMRRLVEYLKQRLKATQVEQE 359
Query: 233 SPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIE 292
+P FL +S A I+
Sbjct: 360 TPMAFLAHLSQTAA--------------------------------------------ID 375
Query: 293 RKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTV 352
K L+FC +RL SLL+TLEI + +F+++ ++ TLV +Y KGFA+I+EP+ ++ P +
Sbjct: 376 GKTLKFCHDRLTSLLKTLEIVDTEEFNAVSLVADFGTLVGTYEKGFALILEPYDERYPNI 435
Query: 353 PNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARP 412
P+PVL CLD+SLAI PVF+RF V ITSGTLSP+D+YPK+L+F PV S MTL R
Sbjct: 436 PDPVLQLSCLDASLAIAPVFERFDNVFITSGTLSPIDLYPKLLSFNPVACISLPMTLTRD 495
Query: 413 CLLPMV 418
CL P+V
Sbjct: 496 CLCPIV 501
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 131/204 (64%), Gaps = 8/204 (3%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKA----GE--NIPVCDFYEKFDAVGREAPLAPGV 709
V++E + VD RC LT+S VR++H + GE +C F+E ++ G +A L PGV
Sbjct: 120 VAEEGSRESVDARCRQLTASWVREKHNSALASGEEPTTELCQFFEDYEREGPDAVLPPGV 179
Query: 710 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 769
Y++ L++ GR G CPYF AR I + ++VY+Y YLLDPK++++VS+EL + VVVFD
Sbjct: 180 YTLADLRQFGRTKGWCPYFTARHMIKCSNVIVYNYQYLLDPKVSSLVSRELEKECVVVFD 239
Query: 770 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRD 829
EAHNIDNVC+++LSV + ++T++ A NI L ++ K+ D +LR EY LV GL +
Sbjct: 240 EAHNIDNVCIEALSVNLRQQTLDVAGRNITALSAKIERAKQTDERRLRAEYDALVNGLAN 299
Query: 830 AQ--SARETDVVLANPVLPDEILQ 851
+ +ANPV+P +IL+
Sbjct: 300 QGVLPRGGGEDAIANPVIPADILR 323
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/118 (58%), Positives = 85/118 (72%), Gaps = 2/118 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ++ L V+FPYEY+YPEQY YM ELK+ LDAKGH LEMP+GTGKT + L+LI +Y
Sbjct: 1 MIFNLEGLTVYFPYEYLYPEQYKYMQELKRGLDAKGHGCLEMPTGTGKTITCLALITSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIH 540
AHP + KL+YC+RTVPE+EKV+ EL L Y KH E M L LSSRKN+C+H
Sbjct: 61 LAHP-ECGKLIYCTRTVPEMEKVLAELRVLQAYREKHVGEAAAMLALGLSSRKNMCVH 117
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 55/70 (78%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
F+ RDD VI+NYG++L+D+A VPDG+V FF SY Y+E +V+ W++ G++ N+ + KL+
Sbjct: 515 FDMRDDPGVIQNYGRILIDMAASVPDGLVAFFVSYSYMEQIVSKWHETGVLQNVMQHKLV 574
Query: 644 FIETQDALDS 653
FIETQD +++
Sbjct: 575 FIETQDVVET 584
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 60/97 (61%), Gaps = 6/97 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ +E D + + V +++ K DYG+M+FADKR+ DKR KL
Sbjct: 642 ARL-EYLRETFQIKEADFLAFDAVRQAAQCVGRVIRSKADYGLMVFADKRYNSHDKRGKL 700
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTR 912
P WI +L + NLST+ AV +++ ++R+MAQP+ R
Sbjct: 701 PGWITTHLKEERLNLSTDMAVHVARTFMREMAQPYDR 737
>gi|302836153|ref|XP_002949637.1| hypothetical protein VOLCADRAFT_59582 [Volvox carteri f.
nagariensis]
gi|300264996|gb|EFJ49189.1| hypothetical protein VOLCADRAFT_59582 [Volvox carteri f.
nagariensis]
Length = 780
Score = 361 bits (927), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 179/388 (46%), Positives = 257/388 (66%), Gaps = 44/388 (11%)
Query: 31 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 90
+I +CDF+E + G EA L PGVY+++ L++ GR+ G CPYFLAR + A +VVY+Y
Sbjct: 171 DIELCDFFEGHERAGVEALLPPGVYTLSDLRDFGRKRGWCPYFLARHMMAFANVVVYNYQ 230
Query: 91 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 150
Y++DPK++ +VS+EL + VVVFDEAHNIDNVC+++LSV + ++T+E A N+ L ++
Sbjct: 231 YMIDPKVSQMVSRELEKECVVVFDEAHNIDNVCIEALSVNLRKQTLEAAGRNLGKLSNSI 290
Query: 151 KEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFV 210
+ +EAD+A+L+ EY RLV GL + R + LANP LP++++QE VPGNIR AEHF+
Sbjct: 291 RRAREADAARLQGEYNRLVAGLVAQGALRGGEDWLANPALPEDVVQETVPGNIRRAEHFM 350
Query: 211 GFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRV 270
GFL RF+ +L+ ++ V ++P FL+++ RV
Sbjct: 351 GFLNRFLAFLREKMASPVVTSQTPQVFLQELQE-------------------------RV 385
Query: 271 QQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATL 330
Q ++ K L+FC +RL+SLL+TLEITN +F+ + ++ ATL
Sbjct: 386 Q-------------------VDAKTLKFCYDRLSSLLKTLEITNTDEFTPIQLVADFATL 426
Query: 331 VSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDM 390
V +Y KGFAII+EP+ ++ P VP+PVL CLD+SLA+KPVF +FQ+VVITSGTLSP+D+
Sbjct: 427 VGTYAKGFAIIMEPYDERLPQVPDPVLQLSCLDASLAMKPVFSKFQSVVITSGTLSPIDL 486
Query: 391 YPKILNFQPVIMHSFSMTLARPCLLPMV 418
YP+ILNF PV + SF MTL R CL P+V
Sbjct: 487 YPRILNFNPVAIQSFQMTLTRDCLCPVV 514
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 120/166 (72%)
Query: 686 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 745
+I +CDF+E + G EA L PGVY+++ L++ GR+ G CPYFLAR + A +VVY+Y
Sbjct: 171 DIELCDFFEGHERAGVEALLPPGVYTLSDLRDFGRKRGWCPYFLARHMMAFANVVVYNYQ 230
Query: 746 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 805
Y++DPK++ +VS+EL + VVVFDEAHNIDNVC+++LSV + ++T+E A N+ L ++
Sbjct: 231 YMIDPKVSQMVSRELEKECVVVFDEAHNIDNVCIEALSVNLRKQTLEAAGRNLGKLSNSI 290
Query: 806 KEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
+ +EAD+A+L+ EY RLV GL + R + LANP LP++++Q
Sbjct: 291 RRAREADAARLQGEYNRLVAGLVAQGALRGGEDWLANPALPEDVVQ 336
Score = 152 bits (383), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 92/121 (76%), Gaps = 5/121 (4%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ++ L V+FPYEYIYPEQY YM+ELK+ALDA+GHCLLEMP+GTGKT +LLSLI +Y
Sbjct: 1 MKFNLEGLTVYFPYEYIYPEQYRYMLELKRALDARGHCLLEMPTGTGKTITLLSLITSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY---YIKHNEEIN-MTGLVLSSRKNLCI 539
AH +V KL+YC+RTVPE+EKV+ ELA L DY Y+ N + L LSSRKNLCI
Sbjct: 61 LAHK-EVGKLIYCTRTVPEMEKVLAELAELIDYRAKYLGRGPGSNEILALGLSSRKNLCI 119
Query: 540 H 540
H
Sbjct: 120 H 120
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ + C+ P VV + + + FE R D V+RNYG+LLV+++ VVPDG+V FF
Sbjct: 502 QMTLTRDCLCPV-VVTRGADQMPMSTKFEMRGDPGVMRNYGRLLVELSAVVPDGIVAFFV 560
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
SY Y++ +++ W+D GI+ + + KL+FIETQD +++
Sbjct: 561 SYRYMDQIISKWHDMGILQEIMQHKLIFIETQDVVET 597
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 6/97 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ +E D + + V +++ K DYG+MIFADKR+ R DKR KL
Sbjct: 655 ARL-EYLRETFQIKENDYLAFDAVRQAAQCVGRVIRSKADYGMMIFADKRYQRHDKRDKL 713
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTR 912
P+WI +L + NLST+ V +++ +LR MAQP+ R
Sbjct: 714 PQWITRHLKEAHMNLSTDMMVHVAREFLRAMAQPYDR 750
>gi|403216750|emb|CCK71246.1| hypothetical protein KNAG_0G01890 [Kazachstania naganishii CBS
8797]
Length = 773
Score = 360 bits (923), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 204/509 (40%), Positives = 296/509 (58%), Gaps = 81/509 (15%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGEN--IPVCDFYEKFDAVGREAPLAPGVYSIT 58
V KER G +VD +C LT+ + + + N + +C ++E + E L GV+S
Sbjct: 120 VRKERKGTVVDEKCRRLTNGVNKRKLEEDPNAEVELCAYHENLYDLDVENYLPNGVFSFE 179
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
KL + E LCPYF+ R+ I I++YSYHYLLDPKIA VS+E+++ S+V+FDEAHN
Sbjct: 180 KLIKYCEEKTLCPYFIVRRMISMCNIIIYSYHYLLDPKIAERVSREVSKDSIVIFDEAHN 239
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR--DAQ 176
IDNVC++SLS+ + + +A +LE ++E++ D+ KL++EY++LV+GL D
Sbjct: 240 IDNVCIESLSLDLTNDVLRRAAKGANSLEEKVQEVRSVDATKLQDEYSKLVQGLHMVDIV 299
Query: 177 SARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPAT 236
A+E + + PVL +++L E +PGNIR AEHFV F+KR IEYLKTR++V V+ E+P +
Sbjct: 300 PAQE-ETFVETPVLSEDLLTEAIPGNIRRAEHFVSFMKRLIEYLKTRMKVLHVISETPKS 358
Query: 237 FLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPL 296
FL +HLK TF I+RKPL
Sbjct: 359 FL-----------------------QHLKH------------LTF---------IDRKPL 374
Query: 297 RFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPV 356
RFC+ERL+ L+RTLE+T + DF++L I ATL+S+Y GF +I+EP+ + VPNP+
Sbjct: 375 RFCSERLSLLVRTLEVTEVEDFTALKDIATFATLISTYEDGFQLIIEPYEIENAAVPNPI 434
Query: 357 LYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLP 416
+ F CLD+S+AIKPVF+ F +V+ITSGT+SPLDMYPK+LNF+ V+ S++MTLA+ LP
Sbjct: 435 MRFTCLDASIAIKPVFETFSSVIITSGTISPLDMYPKMLNFETVLQKSYAMTLAKKSFLP 494
Query: 417 M----------------------VRENYAMGLMI-------DDLPVFFPYEYIYPEQYAY 447
M + NY +M+ D + VFFP Y+Y E
Sbjct: 495 MIVTKGSDQVAISSRFEIRNDPSIVRNYG-SMMVEFAKITPDGMVVFFP-SYLYMESIVS 552
Query: 448 MVELKKALD-AKGHCLLEMPSGTGKTTSL 475
M + LD H L+ + + + TSL
Sbjct: 553 MWQTMGILDEVWKHKLILVETPDAQETSL 581
Score = 154 bits (388), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 126/199 (63%), Gaps = 5/199 (2%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGEN--IPVCDFYEKFDAVGREAPLAPGVYSIT 713
V KER G +VD +C LT+ + + + N + +C ++E + E L GV+S
Sbjct: 120 VRKERKGTVVDEKCRRLTNGVNKRKLEEDPNAEVELCAYHENLYDLDVENYLPNGVFSFE 179
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
KL + E LCPYF+ R+ I I++YSYHYLLDPKIA VS+E+++ S+V+FDEAHN
Sbjct: 180 KLIKYCEEKTLCPYFIVRRMISMCNIIIYSYHYLLDPKIAERVSREVSKDSIVIFDEAHN 239
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR--DAQ 831
IDNVC++SLS+ + + +A +LE ++E++ D+ KL++EY++LV+GL D
Sbjct: 240 IDNVCIESLSLDLTNDVLRRAAKGANSLEEKVQEVRSVDATKLQDEYSKLVQGLHMVDIV 299
Query: 832 SARETDVVLANPVLPDEIL 850
A+E + + PVL +++L
Sbjct: 300 PAQE-ETFVETPVLSEDLL 317
Score = 136 bits (342), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 84/120 (70%), Gaps = 6/120 (5%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQY YM ++K+ LDA G+ +LEMPSGTGKT SLLSL VAY
Sbjct: 1 MKFFIDDLPVLFPYPKIYPEQYHYMCDIKRTLDAGGNSILEMPSGTGKTVSLLSLTVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK---HNEEINMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL L DY K H EE GL L+SRKNLC+H
Sbjct: 61 MHYP-EHRKIIYCSRTMSEIEKALVELENLMDYRAKELGHAEEFR--GLGLTSRKNLCLH 117
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D S++RNYG ++V+ A + PDG+V FF SYLY+ES+V+ W GI+D + K
Sbjct: 506 ISSRFEIRNDPSIVRNYGSMMVEFAKITPDGMVVFFPSYLYMESIVSMWQTMGILDEVWK 565
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 566 HKLILVETPDAQETSLALETYRKACSNGRGAILMSVA---RGKVSEGI 610
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 58/78 (74%), Gaps = 2/78 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYG+M+ AD+RFAR K+S+LPKWI + L+D NLST+ A+ +K++LR MAQ
Sbjct: 669 VLRGKDDYGVMVLADRRFAR--KKSQLPKWIAQGLSDADMNLSTDMAIANAKQFLRTMAQ 726
Query: 909 PFTREDMLGVALLSLDQL 926
P +D GV++ +LD L
Sbjct: 727 PTDPKDQEGVSVWNLDDL 744
>gi|254578942|ref|XP_002495457.1| ZYRO0B11836p [Zygosaccharomyces rouxii]
gi|238938347|emb|CAR26524.1| ZYRO0B11836p [Zygosaccharomyces rouxii]
Length = 770
Score = 359 bits (922), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 183/421 (43%), Positives = 264/421 (62%), Gaps = 47/421 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGEN--IPVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKER+G +VD +C +T+ + + +A + + +CD++E E L GV+S
Sbjct: 120 VSKERNGTLVDEKCRRMTNGQAKHKQEADPDAKVELCDYHENLYNYQVEDYLPKGVFSFE 179
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
KL E LCPYF+ R+ I I++YSYHYLLDPKIA VS E+++ +V+FDEAHN
Sbjct: 180 KLIRYCEERTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDGIVIFDEAHN 239
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + +++A LE + E+++ D+ +L++EY +LV+ L A
Sbjct: 240 IDNVCIESLSLDLTNDVLKRATKGAYALENRIDEVRQVDARRLQDEYDKLVQDLHAADIL 299
Query: 179 -RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATF 237
+E + + PVL +++ E +PGNIR AEHFV FLKR IEYLKTR++V V+ E+P +F
Sbjct: 300 DQEEEPAVETPVLSQDLITEAMPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSF 359
Query: 238 LKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLR 297
L +HLK TF I+RKPLR
Sbjct: 360 L-----------------------QHLKQ------------LTF---------IDRKPLR 375
Query: 298 FCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVL 357
FCAERL+ L+RTLE+T + DF++L I ATL+S+Y GF +I+EP+ + VPNP++
Sbjct: 376 FCAERLSLLVRTLEVTEIEDFTALKDIATFATLISTYESGFLLIIEPYEIENAAVPNPIM 435
Query: 358 YFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM 417
F CLD+S+AIKPVF+RF +V+ITSGT+SPLDMYP++LNF V+ S++MTLA+ LPM
Sbjct: 436 RFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFDTVLQKSYAMTLAKKSFLPM 495
Query: 418 V 418
+
Sbjct: 496 I 496
Score = 152 bits (383), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 122/198 (61%), Gaps = 3/198 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGEN--IPVCDFYEKFDAVGREAPLAPGVYSIT 713
VSKER+G +VD +C +T+ + + +A + + +CD++E E L GV+S
Sbjct: 120 VSKERNGTLVDEKCRRMTNGQAKHKQEADPDAKVELCDYHENLYNYQVEDYLPKGVFSFE 179
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
KL E LCPYF+ R+ I I++YSYHYLLDPKIA VS E+++ +V+FDEAHN
Sbjct: 180 KLIRYCEERTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDGIVIFDEAHN 239
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC++SLS+ + +++A LE + E+++ D+ +L++EY +LV+ L A
Sbjct: 240 IDNVCIESLSLDLTNDVLKRATKGAYALENRIDEVRQVDARRLQDEYDKLVQDLHAADIL 299
Query: 834 -RETDVVLANPVLPDEIL 850
+E + + PVL +++
Sbjct: 300 DQEEEPAVETPVLSQDLI 317
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/120 (55%), Positives = 83/120 (69%), Gaps = 2/120 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQY YM +LK+ LD+ G+ +LEMPSGTGKT SLLSL +AY
Sbjct: 1 MKFFIDDLPVLFPYPKIYPEQYHYMCDLKRTLDSGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+P + K++YCSRT+ EIEK + EL L DY K + GL L+SRKNLC+H +
Sbjct: 61 MHYP-EHRKIIYCSRTMSEIEKALVELENLMDYRTKELGYREDFRGLGLTSRKNLCLHPQ 119
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 54/74 (72%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D S++RNYG +LV+ A + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 506 ISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFPSYLYMESIISMWQTMGILDEVWK 565
Query: 640 RKLLFIETQDALDS 653
KL+ +ET DA ++
Sbjct: 566 YKLILVETPDAQET 579
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 73/118 (61%), Gaps = 8/118 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+MI AD+RF+R KR++L
Sbjct: 637 ARL-EFLRENYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMILADRRFSR--KRNQL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHAR 933
PKWI + L+D NLST+ A+ +K++LR MAQ +D GV++ ++L++ + +
Sbjct: 694 PKWISQGLSDADLNLSTDMAIANAKQFLRTMAQSTDPKDQEGVSVWRHEELIKYQQEK 751
>gi|449018319|dbj|BAM81721.1| DNA excision repair protein ERCC2/XPD [Cyanidioschyzon merolae
strain 10D]
Length = 782
Score = 358 bits (920), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 178/434 (41%), Positives = 269/434 (61%), Gaps = 64/434 (14%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAG----------ENIP--VCDFYEKFDAVGREA 48
VSK + D C SLT+S VR+ H A E++P +C FYE + G +A
Sbjct: 126 VSKAESREEADSLCRSLTASWVRESHSAAIARFEKNPDLEDLPTTLCQFYEGYRREGNDA 185
Query: 49 PLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARS 108
L G+Y++ K+ ++GRE G CPY+ R + A ++VY+Y YLLDPKIA ++S+EL+R
Sbjct: 186 ILPSGIYTLEKVLQIGRERGWCPYYTVRHTMNFANVIVYNYQYLLDPKIAGLISRELSRE 245
Query: 109 SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARL 168
+VVFDEAHNIDNVC+D+LSV + + +A N+ +L ++E++ D +L EEY R+
Sbjct: 246 CIVVFDEAHNIDNVCIDALSVSLRLDDLRRAQANVVSLRNRIQEIRTHDERRLLEEYRRI 305
Query: 169 VEGLRDAQSARETDV----VLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRL 224
++G+R R DV + A+PV+P+++LQE +PGNIR EHF+ FL R I++ + R+
Sbjct: 306 LQGIR-----RPADVDAFTIEASPVIPEDVLQETIPGNIRRGEHFLLFLLRLIDFFRQRM 360
Query: 225 RVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKD 284
R QV Q++P FL + P+ + D
Sbjct: 361 RSTQVTQDTPRNFLHAL-----------------------------------MPSVQIPD 385
Query: 285 ISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEP 344
KPLRFC++RLASLL+TLEI+N+ DF SL + H ATL+ +Y++GF++I+EP
Sbjct: 386 --------SKPLRFCSDRLASLLQTLEISNVRDFVSLQKLAHFATLLGTYSQGFSVIMEP 437
Query: 345 FSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHS 404
+ ++AP VP+PVL CLD+S+ ++P+F RFQ+V++TSGT+SPLD+Y +IL F+P + HS
Sbjct: 438 YDERAPNVPDPVLQLSCLDASIGMRPIFTRFQSVILTSGTISPLDLYARILGFRPAVAHS 497
Query: 405 FSMTLARPCLLPMV 418
+++L R + PMV
Sbjct: 498 LNISLHRASICPMV 511
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 134/213 (62%), Gaps = 21/213 (9%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAG----------ENIP--VCDFYEKFDAVGRE 702
+VSK + D C SLT+S VR+ H A E++P +C FYE + G +
Sbjct: 125 AVSKAESREEADSLCRSLTASWVRESHSAAIARFEKNPDLEDLPTTLCQFYEGYRREGND 184
Query: 703 APLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELAR 762
A L G+Y++ K+ ++GRE G CPY+ R + A ++VY+Y YLLDPKIA ++S+EL+R
Sbjct: 185 AILPSGIYTLEKVLQIGRERGWCPYYTVRHTMNFANVIVYNYQYLLDPKIAGLISRELSR 244
Query: 763 SSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYAR 822
+VVFDEAHNIDNVC+D+LSV + + +A N+ +L ++E++ D +L EEY R
Sbjct: 245 ECIVVFDEAHNIDNVCIDALSVSLRLDDLRRAQANVVSLRNRIQEIRTHDERRLLEEYRR 304
Query: 823 LVEGLRDAQSARETDV----VLANPVLPDEILQ 851
+++G+R R DV + A+PV+P+++LQ
Sbjct: 305 ILQGIR-----RPADVDAFTIEASPVIPEDVLQ 332
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 88/125 (70%), Gaps = 8/125 (6%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ++++ V+FPY+Y+YPEQYAYM ELK+ALD+ GHC+LEMP+GTGKT +LLS I +Y
Sbjct: 1 MIFNVENVKVYFPYDYVYPEQYAYMRELKRALDSNGHCILEMPTGTGKTVTLLSFITSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY-------YIKHNEEINMTGLVLSSRKN 536
AH +V KL+YC+RTV E+EKV+ EL + Y K ++ + + L++R+N
Sbjct: 61 LAHR-EVRKLIYCTRTVGELEKVLSELEVVIRYRDAQLEKAGKRDQAAAVLAVGLTTRRN 119
Query: 537 LCIHS 541
LC+ S
Sbjct: 120 LCLQS 124
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 60/84 (71%)
Query: 570 VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWY 629
V+ + + + S +++R D SVIRNYG LLV++A VVPDGVV FFTSY+YLESVV W+
Sbjct: 511 VIARGSDQIAISSKYDSRRDPSVIRNYGALLVELASVVPDGVVGFFTSYIYLESVVQMWH 570
Query: 630 DQGIIDNLQKRKLLFIETQDALDS 653
GII L + KL+FIET D +S
Sbjct: 571 QMGIIQKLLEHKLVFIETPDIFES 594
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 6/106 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +++ K DYG+MI AD+R+ R+ RSKL
Sbjct: 652 ARL-EFLREHLQIREGDFLTFDAMRQAAQCMGRVIRSKVDYGLMILADRRYNRAQNRSKL 710
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALL 921
P WIQ +L + +LST+ A+ + + +L +MAQP R++M+G LL
Sbjct: 711 PLWIQSHLDEGKVDLSTDMALGIIQEFLIRMAQPLDRKEMIGTTLL 756
>gi|299470447|emb|CBN78439.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 824
Score = 358 bits (918), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 192/461 (41%), Positives = 258/461 (55%), Gaps = 87/461 (18%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V +E D + VDG C +T+S VR + +AG +C+F+E + A G +A + G+YS+ L
Sbjct: 121 VIEESDREAVDGACRDMTASWVRKKAEAGGGGELCEFFEGYSANGSDAAMPNGIYSLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE G+E G CPYFLAR I HA ++VY+Y Y+LDPK+A +VS+EL SVVVFDEAHNID
Sbjct: 181 KEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC ++LSV +++R+++ A + + + EMK D A+L EY RLV GL D+ R
Sbjct: 241 NVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRA 300
Query: 181 -------------------------------------TDVVLANPV------LPDEILQE 197
T+V A LP +ILQE
Sbjct: 301 SGGVAGSAAGAGGAAAAGGGGGGAAGAGASAGSGGGATEVAAAADAIPANPALPADILQE 360
Query: 198 VVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYI 257
VPGNIR AEHFV F+++ +E
Sbjct: 361 AVPGNIRRAEHFVSFMRKVVE--------------------------------------- 381
Query: 258 FSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTD 317
H KTR+RVQ V E+P F+ + +ERKPL+F RL SLLRTLE+T L D
Sbjct: 382 -----HFKTRVRVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDD 436
Query: 318 FSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQT 377
F LV + ATLV +YT+GFA+++EP P V PV+ CLD+SLAI+PVF+RF +
Sbjct: 437 FRPLVDVADFATLVGTYTEGFAVVIEPTGSVVPGVYEPVMRLACLDASLAIRPVFERFAS 496
Query: 378 VVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
VVITSGTLSPLD+YPK+L F PV+ + SM+ R C+ P+V
Sbjct: 497 VVITSGTLSPLDLYPKLLGFSPVVRTALSMSTVRKCICPLV 537
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/179 (48%), Positives = 121/179 (67%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
V +E D + VDG C +T+S VR + +AG +C+F+E + A G +A + G+YS+ L
Sbjct: 121 VIEESDREAVDGACRDMTASWVRKKAEAGGGGELCEFFEGYSANGSDAAMPNGIYSLDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE G+E G CPYFLAR I HA ++VY+Y Y+LDPK+A +VS+EL SVVVFDEAHNID
Sbjct: 181 KEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
NVC ++LSV +++R+++ A + + + EMK D A+L EY RLV GL D+ R
Sbjct: 241 NVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGR 299
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/143 (53%), Positives = 96/143 (67%), Gaps = 11/143 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L VFFPY+++YPEQY YM+ELK++LDAKGHCLLEMP+GTGKT L+SLI +Y
Sbjct: 1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH--NEEINMTGLVLSSRKNLCIHS 541
AHP +V KL+YC+RTVPE+ K +EEL R+ Y E + L LSSR+NLCIH
Sbjct: 61 FAHP-EVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKVLALCLSSRRNLCIHE 119
Query: 542 EFETRDDISVIRNYGQLLVDIAC 564
VI + VD AC
Sbjct: 120 R--------VIEESDREAVDGAC 134
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 66/90 (73%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P VV + L + + F+ RDD SV+RNYG L++++A +VPDGVVCFFTSY Y+E
Sbjct: 532 CICPL-VVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIELAAIVPDGVVCFFTSYSYMEM 590
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+V+ W + G++ + ++KL+FIET+D +++
Sbjct: 591 IVSKWDELGVLKRVLEKKLIFIETKDVVET 620
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 47/66 (71%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRD 588
+V L + ++F+ RDD SV+RNYG L++++A +VPDGVVCFFTSY Y+E + D
Sbjct: 537 VVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIELAAIVPDGVVCFFTSYSYMEMIVSKWD 596
Query: 589 DISVIR 594
++ V++
Sbjct: 597 ELGVLK 602
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 6/95 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR RE D + + + +++ KTDYG++I AD R+ R DKRSKL
Sbjct: 678 ARL-EYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKRSKL 736
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPF 910
P W+ ++L + N+S + A +++ +L+ MAQP
Sbjct: 737 PGWVLQFLDETHLNMSADNAAAMARMFLKDMAQPL 771
>gi|328871712|gb|EGG20082.1| transcription factor IIH component [Dictyostelium fasciculatum]
Length = 791
Score = 357 bits (917), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 183/420 (43%), Positives = 260/420 (61%), Gaps = 56/420 (13%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS ER+GK VD C LTS +RD +A + C F E F++ G+E L GVY+I L
Sbjct: 120 VSSEREGKTVDSLCRDLTSPWIRDNPQADK----CSFNENFESNGQEI-LLEGVYNIGDL 174
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE G + +CPYFL+R+ I A IV++SY Y+LDPKIA++++ +S+VVFDEAHNID
Sbjct: 175 KEFGLKNQMCPYFLSRRIINFANIVIFSYQYMLDPKIASLITASFDSNSIVVFDEAHNID 234
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL-RDAQSAR 179
NVC++SLSV I+ R +E NI + G + ++K D +L++EY+RL+ GL R S R
Sbjct: 235 NVCINSLSVNIDNRILEAGSRNITKITGQIDKVKAIDEKRLKDEYSRLLGGLARTGASNR 294
Query: 180 ETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLK 239
D ++ +PVLP ++++E VPGNIR AEH++ ++RF++YL RLR Q ++ ESP FL+
Sbjct: 295 --DELMTDPVLPADVIREAVPGNIRKAEHYLSLMRRFMDYLANRLRSQTLISESPMAFLQ 352
Query: 240 DISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFC 299
+ + I K LRFC
Sbjct: 353 SLYHTTS--------------------------------------------INAKTLRFC 368
Query: 300 AERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYF 359
++RL+SLLRTL+I+++ FS + VI LATL+ +Y KGF II+EPF ++P +PV F
Sbjct: 369 SQRLSSLLRTLQISDINQFSGIGVIADLATLIGTYNKGFLIIIEPFDQRSPNQFDPVFQF 428
Query: 360 CCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLAR----PCLL 415
CCLD+S+ +KP+FD+F+ VVITSGTLSPLD+Y KILN +P + M+L R PC+L
Sbjct: 429 CCLDASIGMKPIFDKFKNVVITSGTLSPLDIYTKILNIRPTTVERLPMSLIRDSICPCIL 488
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 131/197 (66%), Gaps = 8/197 (4%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS ER+GK VD C LTS +RD +A + C F E F++ G+E L GVY+I L
Sbjct: 120 VSSEREGKTVDSLCRDLTSPWIRDNPQADK----CSFNENFESNGQEI-LLEGVYNIGDL 174
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE G + +CPYFL+R+ I A IV++SY Y+LDPKIA++++ +S+VVFDEAHNID
Sbjct: 175 KEFGLKNQMCPYFLSRRIINFANIVIFSYQYMLDPKIASLITASFDSNSIVVFDEAHNID 234
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL-RDAQSAR 834
NVC++SLSV I+ R +E NI + G + ++K D +L++EY+RL+ GL R S R
Sbjct: 235 NVCINSLSVNIDNRILEAGSRNITKITGQIDKVKAIDEKRLKDEYSRLLGGLARTGASNR 294
Query: 835 ETDVVLANPVLPDEILQ 851
D ++ +PVLP ++++
Sbjct: 295 --DELMTDPVLPADVIR 309
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/122 (52%), Positives = 83/122 (68%), Gaps = 10/122 (8%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M +DDL V+FPY +IYPEQY YM+ LK++LD G C+LEMPSGTGKT SLL+LI +Y
Sbjct: 1 MKFYLDDLLVYFPYAFIYPEQYNYMLHLKRSLDNGGPCMLEMPSGTGKTVSLLALISSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTG-----LVLSSRKNLC 538
+P KL+YCSRTVPEIE+ VEE ++ Y N E+ + +SSR+NLC
Sbjct: 61 VKNP--NVKLIYCSRTVPEIEQAVEEARKVLAY---RNAELGDKAPKTLCMAMSSRRNLC 115
Query: 539 IH 540
+H
Sbjct: 116 VH 117
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 72/120 (60%), Gaps = 6/120 (5%)
Query: 821 ARLVEGLRDAQSARET-----DVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD +E+ D + +++GKTDYGIMIFADKRF R DKR+KL
Sbjct: 628 ARL-EFLRDQFQIKESEFLSFDAMRTASQCVGRVIRGKTDYGIMIFADKRFNRLDKRNKL 686
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
P+WI + NLST+ AV L +++LR MAQP R LG L S+ + ++E ++ +
Sbjct: 687 PQWINQSCKPEHLNLSTDMAVGLCRKFLRDMAQPIPRNQQLGKVLWSIKDVEKQEPSKNQ 746
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
F+ R D +VIRNYG LLV+++ +VPDG++CFFTSY Y+E +V+ W + G+++ + KL+
Sbjct: 501 FDVRSDTTVIRNYGSLLVEMSSIVPDGIICFFTSYSYMEQIVSVWNEMGLLNKVLSNKLI 560
Query: 644 FIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
F+ET D +S + +GR L S + R K E I
Sbjct: 561 FVETSDPAESALALQNYKKACDNGRGAVLLSVA---RGKVSEGI 601
>gi|365983344|ref|XP_003668505.1| hypothetical protein NDAI_0B02270 [Naumovozyma dairenensis CBS 421]
gi|343767272|emb|CCD23262.1| hypothetical protein NDAI_0B02270 [Naumovozyma dairenensis CBS 421]
Length = 771
Score = 357 bits (915), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 201/507 (39%), Positives = 292/507 (57%), Gaps = 77/507 (15%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENI--PVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKER G +VD +C +T+ + + + N +C+++E + + L GV+S
Sbjct: 120 VSKERKGSVVDEKCRRMTNGIAKRKLEQDPNADAELCEYHENLYKMEVDEYLPNGVFSFE 179
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
KL + E +CPYF+ R+ I I++YSYHYLLDPKIA VS E+++ S+V+FDEAHN
Sbjct: 180 KLIKYCEERTICPYFVVRRMISMCNIMIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + + +A LE + ++++ DS +L++EY +LVEGL +
Sbjct: 240 IDNVCIESLSLDLTNDVLRRATKGAHALEEKIDDVRKIDSQRLQDEYDKLVEGLHSSDIV 299
Query: 179 RET-DVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATF 237
E + + PVL ++L+E +PGNIR AEHFV FLKR IEYLKTR++V V+ E+P +F
Sbjct: 300 PEQEEPFVETPVLSKDLLKEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSF 359
Query: 238 LKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLR 297
L +HLK TF I+RKPLR
Sbjct: 360 L-----------------------QHLKQ------------LTF---------IDRKPLR 375
Query: 298 FCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVL 357
FC+ERL+ L+RTLE+ ++ DF+SL I ATL+S+Y GF +I+EP+ + VPNP++
Sbjct: 376 FCSERLSLLVRTLEVNDVEDFNSLKDIATFATLISTYEDGFLLIIEPYEIENAAVPNPIM 435
Query: 358 YFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM 417
F CLD+S+AIKPVF++F +V+ITSGT+SPLDMYP++LNF+ V+ S+SMTLA+ LPM
Sbjct: 436 RFTCLDASIAIKPVFEKFSSVIITSGTISPLDMYPRMLNFETVLQKSYSMTLAKKSFLPM 495
Query: 418 ----------------------VRENYAMGLM------IDDLPVFFPYEYIYPEQYAYMV 449
+ NY L+ D + VFFP Y+Y E M
Sbjct: 496 IVTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFP-SYLYMESIVSMW 554
Query: 450 ELKKALD-AKGHCLLEMPSGTGKTTSL 475
+ LD H L+ + + + TSL
Sbjct: 555 QTMGILDEVWKHKLILVETPDAQETSL 581
Score = 149 bits (375), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 122/199 (61%), Gaps = 3/199 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENI--PVCDFYEKFDAVGREAPLAPGVYSIT 713
VSKER G +VD +C +T+ + + + N +C+++E + + L GV+S
Sbjct: 120 VSKERKGSVVDEKCRRMTNGIAKRKLEQDPNADAELCEYHENLYKMEVDEYLPNGVFSFE 179
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
KL + E +CPYF+ R+ I I++YSYHYLLDPKIA VS E+++ S+V+FDEAHN
Sbjct: 180 KLIKYCEERTICPYFVVRRMISMCNIMIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC++SLS+ + + +A LE + ++++ DS +L++EY +LVEGL +
Sbjct: 240 IDNVCIESLSLDLTNDVLRRATKGAHALEEKIDDVRKIDSQRLQDEYDKLVEGLHSSDIV 299
Query: 834 RET-DVVLANPVLPDEILQ 851
E + + PVL ++L+
Sbjct: 300 PEQEEPFVETPVLSKDLLK 318
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/118 (56%), Positives = 81/118 (68%), Gaps = 2/118 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQY YM +LKK LDA G+ +LEMPSGTGKT SLLSL ++Y
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYHYMCDLKKTLDAGGNSILEMPSGTGKTVSLLSLTISYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL L Y K + GL L+SRKNLC+H
Sbjct: 61 MHYP-EHRKIIYCSRTMSEIEKALVELENLMAYRAKELGHVETFRGLGLTSRKNLCLH 117
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D S++RNYG +LV+ A + PDG+V FF SYLY+ES+V+ W GI+D + K
Sbjct: 506 ISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFPSYLYMESIVSMWQTMGILDEVWK 565
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 566 HKLILVETPDAQETSLALETYRKACSNGRGAILLSVA---RGKVSEGI 610
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 77/123 (62%), Gaps = 8/123 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF+R KR++L
Sbjct: 637 ARL-EFLRENYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFSR--KRTQL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + L+D NLST+ A+ +K++LR MAQP +D GV++ S + L + ++ + +
Sbjct: 694 PKWIAQGLSDADLNLSTDMAISNAKQFLRTMAQPTDPKDQEGVSVWSFEDLTKHQNEKKK 753
Query: 936 EEE 938
+ +
Sbjct: 754 KSQ 756
>gi|330841374|ref|XP_003292674.1| hypothetical protein DICPUDRAFT_50564 [Dictyostelium purpureum]
gi|325077069|gb|EGC30807.1| hypothetical protein DICPUDRAFT_50564 [Dictyostelium purpureum]
Length = 788
Score = 357 bits (915), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 181/418 (43%), Positives = 262/418 (62%), Gaps = 50/418 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS+ER+GKIVD C LTS R+ N C F+E F+ G+E L GVYS+ L
Sbjct: 120 VSEEREGKIVDSLCRELTSPWNRE----NPNSERCKFFENFEDKGKEI-LLEGVYSLEDL 174
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE G + +CPYFL R + A IV++SY YLLDPKIA++VS A +S+VVFDEAHNID
Sbjct: 175 KEYGLKNQMCPYFLDRHVLNFANIVIFSYQYLLDPKIASLVSSSFATNSIVVFDEAHNID 234
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+++LSV ++ + ++ ++ N+ + ++E+K+ D +L+EEY+RLV+GL + + R
Sbjct: 235 NVCINALSVNLDNKILDASLKNVTKINKQIEEIKKVDEKRLKEEYSRLVQGLARSGTNR- 293
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
T+ V A+PVLP++++QE VPGNIR AEHF+ +KR I+YLK+RL+ Q V+ ESP FL+
Sbjct: 294 TEEVSADPVLPNDVIQEAVPGNIRKAEHFMSLIKRVIDYLKSRLKSQMVISESPMAFLQG 353
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ A S+ S R FC+
Sbjct: 354 LYH--ATSITSRTLR------------------------------------------FCS 369
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
RL+SLLRTL+I ++ FS + +I ATLV +Y GF II+EP+ + + + FC
Sbjct: 370 ARLSSLLRTLKINDINAFSGISLIADFATLVGTYNNGFLIIIEPYYQRQNNTYDQIFQFC 429
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+S+ +KP+FDRF++V+ITSGTLSPLD+Y K+LNF+P ++ SM+L R C+ P +
Sbjct: 430 CLDASIGMKPIFDRFRSVIITSGTLSPLDIYTKMLNFRPKVIEKLSMSLNRNCICPCI 487
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/196 (46%), Positives = 135/196 (68%), Gaps = 6/196 (3%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS+ER+GKIVD C LTS R+ N C F+E F+ G+E L GVYS+ L
Sbjct: 120 VSEEREGKIVDSLCRELTSPWNRE----NPNSERCKFFENFEDKGKEI-LLEGVYSLEDL 174
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE G + +CPYFL R + A IV++SY YLLDPKIA++VS A +S+VVFDEAHNID
Sbjct: 175 KEYGLKNQMCPYFLDRHVLNFANIVIFSYQYLLDPKIASLVSSSFATNSIVVFDEAHNID 234
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+++LSV ++ + ++ ++ N+ + ++E+K+ D +L+EEY+RLV+GL + + R
Sbjct: 235 NVCINALSVNLDNKILDASLKNVTKINKQIEEIKKVDEKRLKEEYSRLVQGLARSGTNR- 293
Query: 836 TDVVLANPVLPDEILQ 851
T+ V A+PVLP++++Q
Sbjct: 294 TEEVSADPVLPNDVIQ 309
Score = 135 bits (340), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 82/122 (67%), Gaps = 10/122 (8%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDL V+FPY Y YPEQY YMV LKK+LD G C+LEMPSGTGKT SLL+LI +Y
Sbjct: 1 MKFFIDDLAVYFPYHYCYPEQYQYMVSLKKSLDEGGPCILEMPSGTGKTVSLLALISSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTG-----LVLSSRKNLC 538
+P KLLYCSRTVPEIE+ EE R+ +Y N ++ + +SSR+NLC
Sbjct: 61 LVNP--TVKLLYCSRTVPEIEQATEEARRVLNY---RNSQLGEKAPKTLCISMSSRRNLC 115
Query: 539 IH 540
IH
Sbjct: 116 IH 117
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 74/111 (66%), Gaps = 6/111 (5%)
Query: 821 ARLVEGLRDAQSARET-----DVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + +++GK+DYGIMIFADKR+ R DKR+KL
Sbjct: 628 ARL-EFLRDRYQIRENEFLTFDAMRTASQCVGRVIRGKSDYGIMIFADKRYNRLDKRNKL 686
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
P+WI ++ + NLST+ A+ LSK++LR+M QPFTRE+ LG +L S++ +
Sbjct: 687 PQWILQFCQNQHLNLSTDMAISLSKQFLREMGQPFTREEQLGKSLWSIEHI 737
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 62/93 (66%), Gaps = 7/93 (7%)
Query: 564 CVVPDGVVCFFT---SYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLY 620
C+ P C T + + + F+ R D +V+RNYG LLV+++ +VPDG++CFFTSY Y
Sbjct: 482 CICP----CILTRGSDQISISTKFDVRSDTAVVRNYGSLLVEVSAIVPDGIICFFTSYSY 537
Query: 621 LESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+E +V+ W + G+++N+ KL+F+ET D +S
Sbjct: 538 MEQIVSVWNEMGLLNNILTNKLIFVETSDPAES 570
>gi|357114542|ref|XP_003559059.1| PREDICTED: DNA repair helicase UVH6-like [Brachypodium distachyon]
Length = 752
Score = 356 bits (914), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 199/485 (41%), Positives = 271/485 (55%), Gaps = 70/485 (14%)
Query: 10 VDGRCHSLTSSSV-----RDRHKAGENIPVCDFYEKFDAVGREAPLA----PGVYSITKL 60
VD C LT+S V DR A P+CD++E FDA R+ LA PGVY++ L
Sbjct: 125 VDTGCRRLTASWVCEKAAYDRESA---TPLCDYFETFDAAARKGDLALYIQPGVYTLADL 181
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ +GRE +CPYFLAR + HA +VVYSY YLLDP++A++VS E+ + VVVFDE HNID
Sbjct: 182 RSLGRERRICPYFLARHMVKHANVVVYSYQYLLDPRVASIVSSEMQKDCVVVFDEVHNID 241
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+++LSV I ++TI+ A GN++ + + K D+++L EY RLV+GL +
Sbjct: 242 NVCIEALSVSIRKQTIQGAKGNLRHISQQIDRFKATDASRLNAEYRRLVDGLAQRGNLPI 301
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+D LAN LPD+IL+E VPGNIR AEHF+ L R + L R+ + VV E P +F
Sbjct: 302 SDAWLANLALPDDILKEAVPGNIRKAEHFLTVLWRLVRNLDERVDTENVVNERPVSFATS 361
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
I S IE LRF
Sbjct: 362 IYSLAG--------------------------------------------IETTTLRFLY 377
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
+RL SLL TLEIT+ +F + I ATL+ +Y +GF+II+EP+ D+ P + +PV+
Sbjct: 378 DRLQSLLLTLEITDTDEFMHIQKICDFATLIGTYKRGFSIIIEPYDDRMPDIRDPVIQLS 437
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMVRE 420
C D+SLAI+PVF+RFQTVVITSGTLSP+D+YP++LNF PVI SF+M+L R C+ PMV
Sbjct: 438 CHDASLAIQPVFNRFQTVVITSGTLSPIDLYPRLLNFNPVISRSFTMSLTRDCICPMVLT 497
Query: 421 NYAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIV 480
+ D LPV ++ M + G LLEM S +
Sbjct: 498 RGS-----DQLPVSTKFD---------MRSDPGVVRNYGRLLLEMASAVPDGIVCFFVSY 543
Query: 481 AYMNA 485
+YM+
Sbjct: 544 SYMDG 548
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 128/196 (65%), Gaps = 12/196 (6%)
Query: 665 VDGRCHSLTSSSV-----RDRHKAGENIPVCDFYEKFDAVGREAPLA----PGVYSITKL 715
VD C LT+S V DR A P+CD++E FDA R+ LA PGVY++ L
Sbjct: 125 VDTGCRRLTASWVCEKAAYDRESA---TPLCDYFETFDAAARKGDLALYIQPGVYTLADL 181
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
+ +GRE +CPYFLAR + HA +VVYSY YLLDP++A++VS E+ + VVVFDE HNID
Sbjct: 182 RSLGRERRICPYFLARHMVKHANVVVYSYQYLLDPRVASIVSSEMQKDCVVVFDEVHNID 241
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+++LSV I ++TI+ A GN++ + + K D+++L EY RLV+GL +
Sbjct: 242 NVCIEALSVSIRKQTIQGAKGNLRHISQQIDRFKATDASRLNAEYRRLVDGLAQRGNLPI 301
Query: 836 TDVVLANPVLPDEILQ 851
+D LAN LPD+IL+
Sbjct: 302 SDAWLANLALPDDILK 317
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 84/119 (70%), Gaps = 1/119 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M +D LPV FPY+ IYPEQ+ YM ELK+ALDA+GH LLEMP+GTGKT +L+SLI +Y
Sbjct: 1 MWFDLDGLPVCFPYDAIYPEQHEYMGELKRALDARGHALLEMPTGTGKTAALISLITSYA 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
A+P +L YC+RTV E+EK + EL LF ++ + + L LSSRKNLC+H +
Sbjct: 61 LANPSRPLRLFYCTRTVHEMEKTLAELRLLFS-HLPPADACRLLALGLSSRKNLCVHPQ 118
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ + L + + F+ R D V+RNYG+LL+++A VPDG+VCFF SY Y++
Sbjct: 490 CICP-MVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPDGIVCFFVSYSYMDG 548
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+V+SW D GI+ + + KL+FIET D +++
Sbjct: 549 IVSSWNDMGILQEIMQHKLVFIETPDVVET 578
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 51/69 (73%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+MIFADKR++R DKRSKLP WI+ +L D NLST+ A+ ++ +LR+MAQ
Sbjct: 668 VIRSKADYGMMIFADKRYSRHDKRSKLPGWIRSHLHDAHLNLSTDMALHTAREFLRRMAQ 727
Query: 909 PFTREDMLG 917
P+ + G
Sbjct: 728 PYDKAGSSG 736
>gi|290983090|ref|XP_002674262.1| DNA repair helicase UVH6 [Naegleria gruberi]
gi|284087851|gb|EFC41518.1| DNA repair helicase UVH6 [Naegleria gruberi]
Length = 753
Score = 355 bits (912), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 188/442 (42%), Positives = 266/442 (60%), Gaps = 73/442 (16%)
Query: 6 DGKIVDGRCHSLTSSSVRDRHKAG---------------------ENIPVCDFYEKF-DA 43
DG VD C LT+S +R K ++I +C+++E+F +A
Sbjct: 84 DGAQVDSVCRGLTASWLRAEAKEKVESSNGTIQPVISNNNATATVDDIELCNYFERFIEA 143
Query: 44 VGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSK 103
+ L GVY++ LK G++ G CPYFL+R+AI +A +VVYSY YLLDPKI++++SK
Sbjct: 144 NPTDTILPNGVYTMRDLKVFGKKKGWCPYFLSRRAIEYANVVVYSYSYLLDPKISSIISK 203
Query: 104 ELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLRE 163
L +S+VVFDEAHNIDNVC+++LS+ I+R + A N+ LE + M++ +S +L+E
Sbjct: 204 NLPANSIVVFDEAHNIDNVCIEALSINIDRDILGVAKSNLTKLEENIANMEKVNSQRLQE 263
Query: 164 EYARLVEGLRDAQSARETDVV------LANPVLPDEILQEVVPGNIRTAEHFVGFLKRFI 217
EY RLV+GL R +DV+ L+NPVLP +I+ E VPGNIR A HFV F+KRF
Sbjct: 264 EYRRLVDGLGAVGVGRSSDVIRSDDELLSNPVLPGDIMTEAVPGNIRKAHHFVKFMKRFA 323
Query: 218 EYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQES 277
++ RL+ Q+ V E+P FL +
Sbjct: 324 THVNKRLQTQKSVNETPEQFLNHV------------------------------------ 347
Query: 278 PATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKG 337
L++I I+ + LRFC+ERL SL+ TLEI N+ +F+ + +I ATL+ +Y +G
Sbjct: 348 ----LENID----IDSRSLRFCSERLLSLMNTLEIKNIYEFNGIKIIMDFATLIGTYQEG 399
Query: 338 FAIIVEPFSDKAPTVPNPVLYFCCLDSSLAI-KPVFDRFQTVVITSGTLSPLDMYPKILN 396
F II+EP + PT P+PVL F C+D+SLAI KP+F RF+TVV+TSGTLSPLDMYPK+L
Sbjct: 400 FVIIIEPHDPRTPTNPDPVLQFSCMDASLAISKPIFGRFKTVVLTSGTLSPLDMYPKLLK 459
Query: 397 FQPVIMHSFSMTLARPCLLPMV 418
F+P+I S MTL R C+ P+V
Sbjct: 460 FKPIISKSLEMTLTRECICPLV 481
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 137/225 (60%), Gaps = 28/225 (12%)
Query: 654 RSVSKERDGKIVDGRCHSLTSSSVRDRHKAG---------------------ENIPVCDF 692
+S S DG VD C LT+S +R K ++I +C++
Sbjct: 77 KSQSFLHDGAQVDSVCRGLTASWLRAEAKEKVESSNGTIQPVISNNNATATVDDIELCNY 136
Query: 693 YEKF-DAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPK 751
+E+F +A + L GVY++ LK G++ G CPYFL+R+AI +A +VVYSY YLLDPK
Sbjct: 137 FERFIEANPTDTILPNGVYTMRDLKVFGKKKGWCPYFLSRRAIEYANVVVYSYSYLLDPK 196
Query: 752 IANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEA 811
I++++SK L +S+VVFDEAHNIDNVC+++LS+ I+R + A N+ LE + M++
Sbjct: 197 ISSIISKNLPANSIVVFDEAHNIDNVCIEALSINIDRDILGVAKSNLTKLEENIANMEKV 256
Query: 812 DSAKLREEYARLVEGLRDAQSARETDVV------LANPVLPDEIL 850
+S +L+EEY RLV+GL R +DV+ L+NPVLP +I+
Sbjct: 257 NSQRLQEEYRRLVDGLGAVGVGRSSDVIRSDDELLSNPVLPGDIM 301
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 465 MPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI 524
MPSGTGKT SLLSLI +Y KL+YC+RTVPE+EKV+EEL L +Y K+ +
Sbjct: 1 MPSGTGKTISLLSLITSYQLTEEGKSRKLIYCTRTVPEMEKVLEELGSLIEYRKKYTDS- 59
Query: 525 NMTGLVLSSRKNLCIHSEFET 545
+ G+ LSSRKNLCIH + ++
Sbjct: 60 PIIGVGLSSRKNLCIHPKSQS 80
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 51/68 (75%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYGIM+ ADKR+ + DKR+KLPKWI + + D NLST+ + +++++L++MAQ
Sbjct: 654 VIRNKADYGIMVLADKRYNQPDKRNKLPKWIAKQIKDTYLNLSTDMIIGIARKYLKEMAQ 713
Query: 909 PFTREDML 916
P+T + L
Sbjct: 714 PYTATNQL 721
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 50/70 (71%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
+ R+D SV RNYG LL++++ +PDG+VCFFTSY Y+E +V+ W G++ ++ KL+
Sbjct: 495 YRFRNDASVQRNYGSLLLELSKYIPDGIVCFFTSYQYMEDIVSFWNSVGLLSSITNHKLV 554
Query: 644 FIETQDALDS 653
FIET + ++
Sbjct: 555 FIETPNTAET 564
>gi|363751190|ref|XP_003645812.1| hypothetical protein Ecym_3517 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889446|gb|AET38995.1| Hypothetical protein Ecym_3517 [Eremothecium cymbalariae
DBVPG#7215]
Length = 756
Score = 355 bits (911), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 185/422 (43%), Positives = 264/422 (62%), Gaps = 49/422 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAG--ENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKER G +VD +C +T+ + + + N+ +C+++E E L GVYS
Sbjct: 120 VSKERKGSVVDEKCRRMTNGQAKTKKEQDIEANVELCEYHENMYNYQPEEYLPLGVYSFE 179
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
KL + + +CPYF R+ I I++YSYHYLLDP+I VS+E++++++V+FDEAHN
Sbjct: 180 KLIKYCEDKTICPYFTVRRMISMCNIIIYSYHYLLDPRIEERVSREISQNAIVIFDEAHN 239
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
IDNVC++SLS+ + + +++A L + E+++ D+ KL++EY LV+GLR A
Sbjct: 240 IDNVCIESLSLDLTKDLLKRASRGANALGKKVDEVRKVDTMKLQQEYQDLVKGLR-ANDI 298
Query: 179 RETD--VVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPAT 236
+ D ++ PVL ++L+E VPGNIR AEHFV FLKRFIEYLKTR++V V+ E+P +
Sbjct: 299 LDPDEEPLIPTPVLSRDVLKEAVPGNIRRAEHFVSFLKRFIEYLKTRMKVLHVISETPNS 358
Query: 237 FLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPL 296
FL HLK TF IERKPL
Sbjct: 359 FL-----------------------HHLKQ------------LTF---------IERKPL 374
Query: 297 RFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPV 356
RFC+ERL+ L+RTLE+ + DF++L I ATL+S+Y GF +I+EP+ + VPNP+
Sbjct: 375 RFCSERLSLLVRTLEVDEIEDFNALKDIATFATLISTYESGFLLIIEPYEIENAAVPNPI 434
Query: 357 LYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLP 416
+ F CLD+S+AIKPVF+RF +V+ITSGT+SPLDMYPK+LNF V+ S+SMTLA LP
Sbjct: 435 MRFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPKMLNFGTVVQKSYSMTLAEKSFLP 494
Query: 417 MV 418
M+
Sbjct: 495 MI 496
Score = 146 bits (368), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 124/200 (62%), Gaps = 5/200 (2%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAG--ENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
VSKER G +VD +C +T+ + + + N+ +C+++E E L GVYS
Sbjct: 120 VSKERKGSVVDEKCRRMTNGQAKTKKEQDIEANVELCEYHENMYNYQPEEYLPLGVYSFE 179
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
KL + + +CPYF R+ I I++YSYHYLLDP+I VS+E++++++V+FDEAHN
Sbjct: 180 KLIKYCEDKTICPYFTVRRMISMCNIIIYSYHYLLDPRIEERVSREISQNAIVIFDEAHN 239
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
IDNVC++SLS+ + + +++A L + E+++ D+ KL++EY LV+GLR A
Sbjct: 240 IDNVCIESLSLDLTKDLLKRASRGANALGKKVDEVRKVDTMKLQQEYQDLVKGLR-ANDI 298
Query: 834 RETD--VVLANPVLPDEILQ 851
+ D ++ PVL ++L+
Sbjct: 299 LDPDEEPLIPTPVLSRDVLK 318
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/118 (59%), Positives = 82/118 (69%), Gaps = 2/118 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQY YM +LKK LD G+ +LEMPSGTGKT SLLSL VAY
Sbjct: 1 MKFYIDDLPVIFPYPKIYPEQYQYMCDLKKTLDIGGNSILEMPSGTGKTVSLLSLTVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNE-EINMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL L DY K E + GL L+SRKNLC+H
Sbjct: 61 MHYP-EHRKIVYCSRTMSEIEKALVELESLMDYRAKELEYQEEFRGLGLTSRKNLCLH 117
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D S++RNYG +LV+ A + PDG+V FF SYLY+ES++++W GI+D + K
Sbjct: 506 ISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFPSYLYMESIISTWQTMGILDEVWK 565
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 566 YKLILVETPDAQETSLALETYRKACSNGRGAILMSVA---RGKISEGI 610
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 72/112 (64%), Gaps = 8/112 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF+R K+S+L
Sbjct: 637 ARL-EFLRENYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFSR--KKSQL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLL 927
PKWI + L+D NLST+ A+ +K++LR MAQ +D GV++ +++QLL
Sbjct: 694 PKWILQGLSDADLNLSTDMAIANTKQFLRTMAQASDPKDHEGVSVWNINQLL 745
>gi|366990349|ref|XP_003674942.1| hypothetical protein NCAS_0B04860 [Naumovozyma castellii CBS 4309]
gi|342300806|emb|CCC68570.1| hypothetical protein NCAS_0B04860 [Naumovozyma castellii CBS 4309]
Length = 774
Score = 354 bits (909), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 201/507 (39%), Positives = 291/507 (57%), Gaps = 77/507 (15%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENI--PVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKER G +VD +C +T+ + + + N +C+++E + L GV+S
Sbjct: 120 VSKERKGTVVDEKCRRMTNGVAKRKLEQDPNADAELCEYHENLYKMEVGDYLPNGVFSFE 179
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
KL + E +CPYF+ R+ I I++YSYHYLLDPKIA VS E+++ S+V+FDEAHN
Sbjct: 180 KLIKYCEERTICPYFVVRRMISMCNIMIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS- 177
IDNVC++SLS+ + + +A LE + ++++ D+ KL++EY +LVEGL A
Sbjct: 240 IDNVCIESLSLDLTNDVLRRATKGANALEERIDDVRKVDAQKLQDEYDKLVEGLHTADIL 299
Query: 178 ARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATF 237
+ + + PVL ++L+E +PGNIR AEHFV FLKR IEYLKTR++V V+ E+P +F
Sbjct: 300 PVQEEPFVETPVLSKDLLKEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSF 359
Query: 238 LKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLR 297
L +HLK TF I+RKPLR
Sbjct: 360 L-----------------------QHLKQ------------LTF---------IDRKPLR 375
Query: 298 FCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVL 357
FC+ERL+ L+RTLE+T + DF++L I ATL+S+Y GF +I+EP+ + VPNP++
Sbjct: 376 FCSERLSLLVRTLEVTEVEDFTALKDIATFATLISTYEDGFLLIIEPYEIENAAVPNPIM 435
Query: 358 YFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM 417
F CLD+S+AIKPVF+RF +V+ITSGT+SPLDMYP++LNF+ V+ S++MTLA+ LPM
Sbjct: 436 RFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFETVLQKSYAMTLAKKSFLPM 495
Query: 418 ----------------------VRENYAMGLM------IDDLPVFFPYEYIYPEQYAYMV 449
+ NY L+ D + VFFP Y+Y E M
Sbjct: 496 IVTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFP-SYLYMESIVSMW 554
Query: 450 ELKKALD-AKGHCLLEMPSGTGKTTSL 475
+ LD H L+ + + + TSL
Sbjct: 555 QTMGILDEVWKHKLILVETPDAQETSL 581
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 121/199 (60%), Gaps = 3/199 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENI--PVCDFYEKFDAVGREAPLAPGVYSIT 713
VSKER G +VD +C +T+ + + + N +C+++E + L GV+S
Sbjct: 120 VSKERKGTVVDEKCRRMTNGVAKRKLEQDPNADAELCEYHENLYKMEVGDYLPNGVFSFE 179
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
KL + E +CPYF+ R+ I I++YSYHYLLDPKIA VS E+++ S+V+FDEAHN
Sbjct: 180 KLIKYCEERTICPYFVVRRMISMCNIMIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS- 832
IDNVC++SLS+ + + +A LE + ++++ D+ KL++EY +LVEGL A
Sbjct: 240 IDNVCIESLSLDLTNDVLRRATKGANALEERIDDVRKVDAQKLQDEYDKLVEGLHTADIL 299
Query: 833 ARETDVVLANPVLPDEILQ 851
+ + + PVL ++L+
Sbjct: 300 PVQEEPFVETPVLSKDLLK 318
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 84/120 (70%), Gaps = 6/120 (5%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQY YM +LKK LDA G+ +LEMPSGTGKT SLLSL +AY
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYHYMCDLKKTLDAGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK---HNEEINMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL L DY + H E N GL L+SRKNLC+H
Sbjct: 61 MHYP-EHRKIIYCSRTMSEIEKALVELENLMDYRARELGHRE--NFRGLGLTSRKNLCLH 117
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D S++RNYG +LV+ A + PDG+V FF SYLY+ES+V+ W GI+D + K
Sbjct: 506 ISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFPSYLYMESIVSMWQTMGILDEVWK 565
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 566 HKLILVETPDAQETSLALETYRKACSNGRGAILLSVA---RGKVSEGI 610
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 77/122 (63%), Gaps = 8/122 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF+R KR++L
Sbjct: 637 ARL-EFLRENYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFSR--KRTQL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
PKWI + L+D NLST+ A+ +K++LR MAQP +D GV++ S D L++ + R E
Sbjct: 694 PKWIAQGLSDADLNLSTDMAISNTKQFLRTMAQPDDPKDQEGVSVWSYDDLMKYQTERKE 753
Query: 936 EE 937
++
Sbjct: 754 KQ 755
>gi|403168572|ref|XP_003889745.1| DNA excision repair protein ERCC-2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375167558|gb|EHS63460.1| DNA excision repair protein ERCC-2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 784
Score = 351 bits (900), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 181/425 (42%), Positives = 265/425 (62%), Gaps = 55/425 (12%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITK 59
VS+E+ GK+VD RC LTS+ ++ +A ++P+CDF+EK + + GV+++ +
Sbjct: 194 VSREKKGKVVDARCRDLTSAWACEKGRADPGSVPLCDFHEKLGELEPGNLIPRGVWTLEE 253
Query: 60 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
+ G + G+CPYF R+ + HA I++YS+HYLLDPK+A VSKEL +S+VVFDEAHNI
Sbjct: 254 ITAYGHQHGICPYFAVRRMLAHADIIIYSFHYLLDPKVATQVSKELLPNSIVVFDEAHNI 313
Query: 120 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 179
DNVC++SLS+ + + ++ A +I L+ ++E+K D++KL+ EY RLV GL +++
Sbjct: 314 DNVCIESLSIDLTKGMLDNAGKSIGALDEKIREIKRTDASKLQNEYERLVRGLGQSENTF 373
Query: 180 ETD---VVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPAT 236
E++ +L NPVLP+++LQE VPGNIR AEHF FL RF+EYLKTR+RV VV E+P +
Sbjct: 374 ESEEEAAILGNPVLPEDLLQEAVPGNIRRAEHFTAFLTRFVEYLKTRMRVLHVVAETPPS 433
Query: 237 FLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPL 296
FL+ + KD++ I+RKPL
Sbjct: 434 FLQHV-----------------------------------------KDLTY---IDRKPL 449
Query: 297 RFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPV 356
RFCA+RL SL+RTLE+T+L +++L + ATLV++Y KGF +I+EPF + TVPNPV
Sbjct: 450 RFCADRLTSLIRTLELTDLDQYNALQKVASFATLVATYEKGFLLILEPFETENATVPNPV 509
Query: 357 LY----FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARP 412
+ F L L P F+ F +V+I G +SP +MYPK+L F + S+SMTL R
Sbjct: 510 FHSDVVFYVL---LGTNPFFEGFSSVIIPWGPISPREMYPKMLGFGATVRDSYSMTLPRN 566
Query: 413 CLLPM 417
LP+
Sbjct: 567 FFLPL 571
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 145/220 (65%), Gaps = 11/220 (5%)
Query: 636 NLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYE 694
L RK L I Q VS+E+ GK+VD RC LTS+ ++ +A ++P+CDF+E
Sbjct: 181 GLTSRKNLCIHPQ-------VSREKKGKVVDARCRDLTSAWACEKGRADPGSVPLCDFHE 233
Query: 695 KFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIAN 754
K + + GV+++ ++ G + G+CPYF R+ + HA I++YS+HYLLDPK+A
Sbjct: 234 KLGELEPGNLIPRGVWTLEEITAYGHQHGICPYFAVRRMLAHADIIIYSFHYLLDPKVAT 293
Query: 755 VVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSA 814
VSKEL +S+VVFDEAHNIDNVC++SLS+ + + ++ A +I L+ ++E+K D++
Sbjct: 294 QVSKELLPNSIVVFDEAHNIDNVCIESLSIDLTKGMLDNAGKSIGALDEKIREIKRTDAS 353
Query: 815 KLREEYARLVEGLRDAQSARETD---VVLANPVLPDEILQ 851
KL+ EY RLV GL +++ E++ +L NPVLP+++LQ
Sbjct: 354 KLQNEYERLVRGLGQSENTFESEEEAAILGNPVLPEDLLQ 393
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 87/132 (65%), Gaps = 14/132 (10%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDL + FPY+ IYPEQYAYM +LK+ LD GHC+LEMPSGTGKT SLLSLIVAY
Sbjct: 63 MIFTIDDLEILFPYDKIYPEQYAYMCDLKRTLDLGGHCVLEMPSGTGKTISLLSLIVAYQ 122
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN-------------EEINMTGLV 530
+P + KL+YCSRTVPEIEK + EL RL Y + E + G+
Sbjct: 123 LYYP-ERRKLVYCSRTVPEIEKALIELKRLMAYRAAQHRLRAGLTDNSAPTNEDDFLGVG 181
Query: 531 LSSRKNLCIHSE 542
L+SRKNLCIH +
Sbjct: 182 LTSRKNLCIHPQ 193
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
FE ++D SV+RN+G +L++ +VPDG+V FF SYLY+ES+VA+W+D GI+ + K KL+
Sbjct: 586 FEFQNDPSVVRNFGTILIEYCKIVPDGIVAFFPSYLYMESIVAAWHDMGILKEVWKYKLI 645
Query: 644 FIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAG 684
F+ET DA+++ S++ E + D ++ S R + G
Sbjct: 646 FVETPDAVET-SIALENYRRACDNGKGAVLLSVARGKVSEG 685
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 6/59 (10%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSK 874
ARL E LRD RE D + + + +L+GKTDYG+M+FADKRFAR+DKR++
Sbjct: 713 ARL-EFLRDNYRIRENDYLTFDAMRHAAQCVGRVLRGKTDYGLMVFADKRFARADKRAQ 770
>gi|156846864|ref|XP_001646318.1| hypothetical protein Kpol_1032p54 [Vanderwaltozyma polyspora DSM
70294]
gi|156116993|gb|EDO18460.1| hypothetical protein Kpol_1032p54 [Vanderwaltozyma polyspora DSM
70294]
Length = 776
Score = 350 bits (899), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 203/507 (40%), Positives = 293/507 (57%), Gaps = 77/507 (15%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAG--ENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKER G +VD +C +T+ + + ++ + +CD++E + E L GVYS
Sbjct: 120 VSKERKGTVVDEKCRRMTNGQAKRKLESDPEAKVELCDYHENLYDLEIEDYLPKGVYSFE 179
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+L + + LCPYF+ R+ I I++YSYHYLLDPKIA VS+E+++ S+V+FDEAHN
Sbjct: 180 RLLKYCEQKTLCPYFIVRRMISMCNIIIYSYHYLLDPKIAERVSREVSKDSIVIFDEAHN 239
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQ-S 177
IDNVC++SLS+ + +++A L ++E++E DS KL++EY +LV+GL A
Sbjct: 240 IDNVCIESLSLDLTNDMLKRATKGANALANKIEEVREVDSQKLQDEYEKLVKGLHTADIL 299
Query: 178 ARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATF 237
E + ++ PVL ++L E +PGNIR AEHFV FLKR IEYLKTR++V V+ E+P +F
Sbjct: 300 EEEEEPLVEVPVLSQDLLTEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSF 359
Query: 238 LKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLR 297
L +HLK TF I+RKPLR
Sbjct: 360 L-----------------------QHLKQ------------LTF---------IDRKPLR 375
Query: 298 FCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVL 357
FC+ERL+ L+RTLE++ + DF++L I ATLVS+Y GF +I+EP+ + VPNP+L
Sbjct: 376 FCSERLSLLVRTLEVSEIEDFNALKDIATFATLVSTYEDGFLLIIEPYEIENAAVPNPIL 435
Query: 358 YFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM 417
F CLD+S+AIKPVF++F +V+ITSGT+SPLDMYP++LNF V+ S++MTL + LPM
Sbjct: 436 RFTCLDASIAIKPVFEKFSSVIITSGTISPLDMYPRMLNFNTVLEKSYAMTLTKKSFLPM 495
Query: 418 ----------------------VRENYAMGLM------IDDLPVFFPYEYIYPEQYAYMV 449
+ NY L+ D + VFFP Y+Y E M
Sbjct: 496 IVTKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFP-SYLYMESIISMW 554
Query: 450 ELKKALD-AKGHCLLEMPSGTGKTTSL 475
+ LD H L+ + + + TSL
Sbjct: 555 QTMGILDEVWKHKLILVETPDAQETSL 581
Score = 154 bits (390), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 115/177 (64%), Gaps = 2/177 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAG--ENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
VSKER G +VD +C +T+ + + ++ + +CD++E + E L GVYS
Sbjct: 120 VSKERKGTVVDEKCRRMTNGQAKRKLESDPEAKVELCDYHENLYDLEIEDYLPKGVYSFE 179
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
+L + + LCPYF+ R+ I I++YSYHYLLDPKIA VS+E+++ S+V+FDEAHN
Sbjct: 180 RLLKYCEQKTLCPYFIVRRMISMCNIIIYSYHYLLDPKIAERVSREVSKDSIVIFDEAHN 239
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDA 830
IDNVC++SLS+ + +++A L ++E++E DS KL++EY +LV+GL A
Sbjct: 240 IDNVCIESLSLDLTNDMLKRATKGANALANKIEEVREVDSQKLQDEYEKLVKGLHTA 296
Score = 132 bits (332), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/120 (56%), Positives = 83/120 (69%), Gaps = 2/120 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQY YM ++KK LDA G+ +LEMPSGTGKT SLLSL VAY
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYHYMCDMKKTLDAGGNSILEMPSGTGKTVSLLSLTVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+P + K++YCSRT+ EIEK + EL L DY + + GL L+SRKNLC+H +
Sbjct: 61 MHYP-EHRKIIYCSRTMSEIEKALIELENLMDYRSRELGYAEDFRGLGLTSRKNLCLHPQ 119
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D S++RNYG +LV+ A + PDG+V FF SYLY+ES+++ W GI+D + K
Sbjct: 506 ISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFPSYLYMESIISMWQTMGILDEVWK 565
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 566 HKLILVETPDAQETSLALETYRKACSNGRGAILLSVA---RGKVSEGI 610
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 74/116 (63%), Gaps = 8/116 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + +L+GK DYG+M+ AD+RF+R +R++L
Sbjct: 637 ARL-EFLRENYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFSR--RRNQL 693
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEH 931
PKWI + L+D NLST+ A+ +K++LR MAQP +D GV++ + ++LL+ +
Sbjct: 694 PKWIAQGLSDADLNLSTDMAIANTKQFLRTMAQPTNPKDQQGVSVWNYEELLQHQQ 749
>gi|401882732|gb|EJT46976.1| general RNA polymerase II transcription factor [Trichosporon asahii
var. asahii CBS 2479]
Length = 794
Score = 350 bits (898), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 180/417 (43%), Positives = 258/417 (61%), Gaps = 64/417 (15%)
Query: 3 KERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITKLK 61
+E+ GK+VD RC +TSS ++ +A ++ +C ++E+ + + GV+++ +K
Sbjct: 141 EEKKGKVVDSRCRDMTSSFACEKGRADPGSVQLCSWHEELNNYEPGHLIPEGVWTLDDVK 200
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121
+ G+E G+CPYF R+ + + +++YS+HYLLDPK+A VS EL++ ++VVFDEAHNI
Sbjct: 201 KYGQEKGVCPYFTIRRMMPYVDVIIYSFHYLLDPKVAEQVSAELSKEAIVVFDEAHNI-- 258
Query: 122 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARET 181
A ++ + + E+K++D+ KL EY +LV+GL A RE
Sbjct: 259 -----------------AARSVAKIGDKIDEIKKSDAEKLNAEYQKLVDGLAAANDRREE 301
Query: 182 DVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDI 241
D +L+NPVL ++++QE +PGNIR AEHF+ FLKRFIEYLKTR+RV VV E+P +F+
Sbjct: 302 DDMLSNPVLSEDMIQEAIPGNIRKAEHFIAFLKRFIEYLKTRMRVLHVVAETPQSFMA-- 359
Query: 242 SSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAE 301
HLK TF IE++PL+FCAE
Sbjct: 360 ---------------------HLKE------------ITF---------IEKRPLQFCAE 377
Query: 302 RLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCC 361
RL SL+RTLE+TNL + +L I TLV++Y KGF +I+EP+ + TVPNP+ +F C
Sbjct: 378 RLTSLIRTLELTNLDEHFALQKIASFGTLVATYEKGFLLILEPYETEHATVPNPIFHFTC 437
Query: 362 LDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
LD SLA+ PVF+RF +V+ITSGT+SPLDMYPK+L FQPVI S+ MTL R LPMV
Sbjct: 438 LDPSLAMAPVFERFSSVIITSGTISPLDMYPKMLQFQPVIQESYPMTLTRNAFLPMV 494
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 119/195 (61%), Gaps = 20/195 (10%)
Query: 658 KERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITKLK 716
+E+ GK+VD RC +TSS ++ +A ++ +C ++E+ + + GV+++ +K
Sbjct: 141 EEKKGKVVDSRCRDMTSSFACEKGRADPGSVQLCSWHEELNNYEPGHLIPEGVWTLDDVK 200
Query: 717 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 776
+ G+E G+CPYF R+ + + +++YS+HYLLDPK+A VS EL++ ++VVFDEAHNI
Sbjct: 201 KYGQEKGVCPYFTIRRMMPYVDVIIYSFHYLLDPKVAEQVSAELSKEAIVVFDEAHNI-- 258
Query: 777 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARET 836
A ++ + + E+K++D+ KL EY +LV+GL A RE
Sbjct: 259 -----------------AARSVAKIGDKIDEIKKSDAEKLNAEYQKLVDGLAAANDRREE 301
Query: 837 DVVLANPVLPDEILQ 851
D +L+NPVL ++++Q
Sbjct: 302 DDMLSNPVLSEDMIQ 316
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 80/147 (54%), Gaps = 34/147 (23%)
Query: 424 MGLMIDDLPVFFPYEYI--------------------------YPEQYAYMVELKKALDA 457
M MIDDLPV FPYE + Y+YM +LKK LDA
Sbjct: 1 MKFMIDDLPVLFPYESLPHGLDLLAGLPMLPPRPVTIVVVHADKDHDYSYMCDLKKTLDA 60
Query: 458 KGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVT-KLLYCSRTVPEIEKVVEELARLFDY 516
MPSGTGKT SLLSLI++YM + + KL+YCSRTVPEIEK + EL RL +Y
Sbjct: 61 G------MPSGTGKTVSLLSLIISYMQFYGGEKKRKLIYCSRTVPEIEKALAELKRLMEY 114
Query: 517 YIKHN-EEINMTGLVLSSRKNLCIHSE 542
++ GL L+SRKNLC++ E
Sbjct: 115 REDMGAKDTGFRGLGLTSRKNLCLNPE 141
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +L+D+A VPDGVV FF SYLY+ES+V++WYD GI+ + K
Sbjct: 504 ISSRFEVRNDPAVVRNFGSILIDMAKTVPDGVVAFFPSYLYMESIVSAWYDMGILSEVWK 563
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KLLF+ET DA+++ K +GR L S + R K E I
Sbjct: 564 HKLLFVETPDAMETSIALKNYREACNNGRGAVLLSVA---RGKVSEGI 608
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 78/123 (63%), Gaps = 12/123 (9%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GKTD+G+M+FADK DKR+KL
Sbjct: 635 ARL-EFLRDNHRIRENDYLTFDAMRHAAQCVGRVLRGKTDWGLMVFADK-----DKRAKL 688
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
P+WI +Y+TD +NLST+ AV L+K+++R ++QPF G++L +L+ + E++ E
Sbjct: 689 PRWINQYITDAHSNLSTDMAVVLAKKFIRNISQPFDHTQT-GISLWTLEDIEERQRKDRE 747
Query: 936 EEE 938
E E
Sbjct: 748 EAE 750
>gi|428170235|gb|EKX39162.1| ERCC2/XPD/Rad3 nucleotide excision repair [Guillardia theta
CCMP2712]
Length = 703
Score = 348 bits (894), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 175/421 (41%), Positives = 271/421 (64%), Gaps = 46/421 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
+S+E D VD +C S+T+S VR R + NI VC F+E FD G ++ L PGVY++ L
Sbjct: 98 ISQESDRIAVDAQCRSITASWVRQRKEQDNNINVCSFFEGFDKHGSQSLLQPGVYTLDDL 157
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ MG+E G CPYF AR I +A ++VY+Y Y++DPKI+ +VS+++ + S++VFDEAHNID
Sbjct: 158 RNMGKEKGWCPYFTARHMIRYANVIVYNYAYVIDPKISLLVSRDVEKESILVFDEAHNID 217
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS--- 177
NVC+++LSV IN++ ++ A NI TL +++ KE ++ +LR+EY RLV GL+ + +
Sbjct: 218 NVCIEALSVNINKKNLDGASRNIATLSRAIEKSKEQNAEQLRQEYERLVAGLQGSGAITG 277
Query: 178 ARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATF 237
A +D +PV L++++PG+I A +F+ F+++ +++LK RLRV V+
Sbjct: 278 APLSDQFGGDPVGFANELEQLIPGDIIQAHNFISFMRKVVDFLKERLRVSNTVE------ 331
Query: 238 LKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLR 297
+++ ++ S L ++++Q E K LR
Sbjct: 332 ------------MTDNVPFVRS----LMQKMQLQ--------------------EPKSLR 355
Query: 298 FCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVL 357
F A+RL SLL TLE+ ++ ++ L ++ LVS+YT+GF II+EPF ++ P VP+P+L
Sbjct: 356 FSAQRLKSLLHTLEVVDVDTYTPLSLVADFCALVSTYTQGFKIIIEPFDERLPNVPDPIL 415
Query: 358 YFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM 417
+ CLD+SLAIKPVF+ FQ+VVITSGTLSP+D+YPKILNF P + +F M+L+R C+ PM
Sbjct: 416 HLACLDASLAIKPVFEHFQSVVITSGTLSPIDLYPKILNFVP-LTKTFEMSLSRQCICPM 474
Query: 418 V 418
+
Sbjct: 475 I 475
Score = 186 bits (471), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 140/216 (64%), Gaps = 12/216 (5%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
+S+E D VD +C S+T+S VR R + NI VC F+E FD G ++ L PGVY++ L
Sbjct: 98 ISQESDRIAVDAQCRSITASWVRQRKEQDNNINVCSFFEGFDKHGSQSLLQPGVYTLDDL 157
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
+ MG+E G CPYF AR I +A ++VY+Y Y++DPKI+ +VS+++ + S++VFDEAHNID
Sbjct: 158 RNMGKEKGWCPYFTARHMIRYANVIVYNYAYVIDPKISLLVSRDVEKESILVFDEAHNID 217
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS--- 832
NVC+++LSV IN++ ++ A NI TL +++ KE ++ +LR+EY RLV GL+ + +
Sbjct: 218 NVCIEALSVNINKKNLDGASRNIATLSRAIEKSKEQNAEQLRQEYERLVAGLQGSGAITG 277
Query: 833 ARETDVVLANPV---------LPDEILQGKTDYGIM 859
A +D +PV +P +I+Q M
Sbjct: 278 APLSDQFGGDPVGFANELEQLIPGDIIQAHNFISFM 313
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 63/116 (54%), Gaps = 15/116 (12%)
Query: 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLL 494
PY + PE+ M + A GTGKT +LLSLI +Y AHP +V KL+
Sbjct: 1 MPYMGLLPEKLPSMTSKRDA------------DGTGKTITLLSLITSYQLAHP-EVPKLV 47
Query: 495 YCSRTVPEIEKVVEELARLFDY--YIKHNEEINMTGLVLSSRKNLCIHSEFETRDD 548
YC+RTVPE+EK +EEL L Y I E + L LSSR+N+CIH E D
Sbjct: 48 YCTRTVPEMEKALEELRELIKYRTSILGAEGGKILALGLSSRRNMCIHPEISQESD 103
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P +V + + L + +++R D S+I NYG+L+V+++ VPDG+V FF SY Y+E
Sbjct: 470 CICP-MIVTRGSDQMPLNARYQSRSDRSIIHNYGRLIVELSSCVPDGMVVFFPSYRYMEE 528
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
VV +W + +++ + KLLFIETQD +++
Sbjct: 529 VVGAWANGKVLEQITTYKLLFIETQDVVET 558
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 864 KRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQP 909
+R+AR+DK+SKLP WI++Y D NLST+ AV +K +L +MA P
Sbjct: 640 QRYARNDKKSKLPSWIRQYTHDTHVNLSTDMAVNAAKEFLAKMAVP 685
>gi|440796100|gb|ELR17209.1| Nucleotide excision repair protein, putative [Acanthamoeba
castellanii str. Neff]
Length = 696
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 184/427 (43%), Positives = 265/427 (62%), Gaps = 64/427 (14%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVR---DRHKA-------GEN------IPVCDFYEKFDAV 44
VS+ G +VD +C LTSS VR D+++ G+ + +CDF+E+++
Sbjct: 80 VSQHTQGVVVDSKCRGLTSSWVRAEADKYRGLHEETTDGQGRRSVGPVELCDFFEEYEKN 139
Query: 45 GREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKE 104
GR+ L GVYS+ LK++GRE G CPYFLAR I + +V+YSY Y++DPKI+++VSKE
Sbjct: 140 GRDV-LLNGVYSLGDLKQIGRERGWCPYFLARHLINFSHVVIYSYQYIIDPKISDLVSKE 198
Query: 105 LARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREE 164
++S+VVFDEAHNIDNVC+D+LSV I++R + + +++ L + +K D+ KL++E
Sbjct: 199 FKKNSIVVFDEAHNIDNVCIDALSVNIDKRILGASARSVKNLSTNITRIKATDADKLKKE 258
Query: 165 YARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRL 224
Y RLVEGL + AR D A+PVLPD+++QEV+P NIR AE F+ LKRF++YL+ RL
Sbjct: 259 YNRLVEGL--SGIARIADEAKADPVLPDDVIQEVIPANIRKAEDFIDLLKRFLQYLQARL 316
Query: 225 RVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKD 284
+QV+ E P FL+ S +E K
Sbjct: 317 NTKQVISEPPLAFLQ-------------------SCQEATK------------------- 338
Query: 285 ISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEP 344
I K LRFCA RL+SLLR LEI++ ++ L V+ ATL+ +Y KGF++I+EP
Sbjct: 339 ------IVPKTLRFCAGRLSSLLRALEISDTAEYQPLGVVCDFATLLGTYQKGFSLIIEP 392
Query: 345 FSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHS 404
SD+ N +L + CLD+S+A++P+ RF++VVITSGTLSPLDMYP++LNF PV+
Sbjct: 393 RSDEE-VENNTILQYTCLDASIAMQPIIRRFRSVVITSGTLSPLDMYPRMLNFMPVVTER 451
Query: 405 FSMTLAR 411
M+L R
Sbjct: 452 LGMSLNR 458
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/251 (41%), Positives = 156/251 (62%), Gaps = 34/251 (13%)
Query: 625 VASWYDQGIIDN--------LQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSS 676
V ++ DQ + D+ L R+ L I Q VS+ G +VD +C LTSS
Sbjct: 48 VVAYRDQELGDDAPKFLGLALSARRNLCIHPQ-------VSQHTQGVVVDSKCRGLTSSW 100
Query: 677 VR---DRHKA-------GEN------IPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGR 720
VR D+++ G+ + +CDF+E+++ GR+ L GVYS+ LK++GR
Sbjct: 101 VRAEADKYRGLHEETTDGQGRRSVGPVELCDFFEEYEKNGRDV-LLNGVYSLGDLKQIGR 159
Query: 721 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVD 780
E G CPYFLAR I + +V+YSY Y++DPKI+++VSKE ++S+VVFDEAHNIDNVC+D
Sbjct: 160 ERGWCPYFLARHLINFSHVVIYSYQYIIDPKISDLVSKEFKKNSIVVFDEAHNIDNVCID 219
Query: 781 SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVL 840
+LSV I++R + + +++ L + +K D+ KL++EY RLVEGL + AR D
Sbjct: 220 ALSVNIDKRILGASARSVKNLSTNITRIKATDADKLKKEYNRLVEGL--SGIARIADEAK 277
Query: 841 ANPVLPDEILQ 851
A+PVLPD+++Q
Sbjct: 278 ADPVLPDDVIQ 288
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 58/80 (72%), Gaps = 3/80 (3%)
Query: 465 MPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH--NE 522
MPSGTGKT SLLSLI +Y AHP +V KL+YCSRTVPEIEK VEEL R+ Y + ++
Sbjct: 1 MPSGTGKTVSLLSLITSYQLAHP-EVGKLVYCSRTVPEIEKAVEELRRVVAYRDQELGDD 59
Query: 523 EINMTGLVLSSRKNLCIHSE 542
GL LS+R+NLCIH +
Sbjct: 60 APKFLGLALSARRNLCIHPQ 79
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++GK DYGIM++ADKR+ R DKRSK+P+W+ + L + NLSTE AV L++ +L++MAQ
Sbjct: 579 VIRGKKDYGIMVWADKRYNRLDKRSKMPQWVSDNLQHSHLNLSTEMAVSLARTFLKEMAQ 638
Query: 909 PFTREDMLGVALLSLDQLLEKE 930
PF+ LG AL +L +++EK+
Sbjct: 639 PFSLTAQLGKALWTL-EMVEKQ 659
Score = 43.5 bits (101), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 16/74 (21%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ + FE R D SV+RNYG LL+ V V+ W + GI+ + +
Sbjct: 463 ISTKFEGRRDPSVLRNYGALLLQFTTV----------------ETVSVWDEIGILRQVVQ 506
Query: 640 RKLLFIETQDALDS 653
KLLF+ET D+++S
Sbjct: 507 HKLLFVETPDSVES 520
>gi|2058510|gb|AAB62733.1| RepD [Dictyostelium discoideum]
Length = 776
Score = 342 bits (876), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 169/418 (40%), Positives = 255/418 (61%), Gaps = 50/418 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS+ERDGK+VD C LTSS R+ + + C F+E F++ G+E L GVYS+ L
Sbjct: 120 VSEERDGKVVDALCRELTSSWNRESPTSEK----CKFFENFESNGKEI-LLEGVYSLEDL 174
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE G + +CPYFL+R + A IV++SY YLLDPKIA+++S +S+VVFDEAHNID
Sbjct: 175 KEYGLKHQMCPYFLSRHMLNFANIVIFSYQYLLDPKIASLISSSFPSNSIVVFDEAHNID 234
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+++LS+ I+ + ++ + NI + ++++K+ D +L++EY RLV GL + S R
Sbjct: 235 NVCINALSINIDNKLLDTSSKNIAKINKQIEDIKKVDEKRLKDEYQRLVNGLARSGSTR- 293
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D ++PVLP++++QE VPGNIR F+ L+R ++YL
Sbjct: 294 ADETTSDPVLPNDVIQEAVPGNIRKPSIFISLLRRVVDYL-------------------- 333
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
K+RL+ Q ++ ESP FL+ + I + LRFC+
Sbjct: 334 ------------------------KSRLKSQMLLSESPLAFLQGLYHATQISSRTLRFCS 369
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
RL+SLLRTL I ++ FS + +I ATLV +Y GF II+EP+ + + + FC
Sbjct: 370 SRLSSLLRTLRINDVNQFSGISLIADFATLVGTYNNGFLIIIEPYYQRQNNTYDQIFQFC 429
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+S+ +KP+FD++++VVITSGTLSPLD+Y K+LNF+P ++ +M+L R C+ P +
Sbjct: 430 CLDASIGMKPIFDKYRSVVITSGTLSPLDIYTKMLNFRPTVVERLTMSLNRNCICPCI 487
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 133/196 (67%), Gaps = 6/196 (3%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS+ERDGK+VD C LTSS R+ + + C F+E F++ G+E L GVYS+ L
Sbjct: 120 VSEERDGKVVDALCRELTSSWNRESPTSEK----CKFFENFESNGKEI-LLEGVYSLEDL 174
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE G + +CPYFL+R + A IV++SY YLLDPKIA+++S +S+VVFDEAHNID
Sbjct: 175 KEYGLKHQMCPYFLSRHMLNFANIVIFSYQYLLDPKIASLISSSFPSNSIVVFDEAHNID 234
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+++LS+ I+ + ++ + NI + ++++K+ D +L++EY RLV GL + S R
Sbjct: 235 NVCINALSINIDNKLLDTSSKNIAKINKQIEDIKKVDEKRLKDEYQRLVNGLARSGSTR- 293
Query: 836 TDVVLANPVLPDEILQ 851
D ++PVLP++++Q
Sbjct: 294 ADETTSDPVLPNDVIQ 309
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/134 (51%), Positives = 85/134 (63%), Gaps = 10/134 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M I+DL V+FPY YIYPEQY+YMV LK++LD G C+LEMPSGTGKT SLLSLI +Y
Sbjct: 1 MKFYIEDLLVYFPYSYIYPEQYSYMVALKRSLDNGGPCILEMPSGTGKTVSLLSLISSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTG-----LVLSSRKNLC 538
+P KL+YCSRTVPEIE+ EE R+ Y N E+ + +SSR+NLC
Sbjct: 61 VKNP--SIKLIYCSRTVPEIEQATEEARRVLQY---RNSEMGEESPKTLCMSMSSRRNLC 115
Query: 539 IHSEFETRDDISVI 552
I D V+
Sbjct: 116 IQPRVSEERDGKVV 129
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 81/123 (65%), Gaps = 6/123 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE + + + + +++GK+DYGIMIFADKR+ R DKR+KL
Sbjct: 628 ARL-EFLRDRYQIRENEFLTFDAMRTASQCVGRVIRGKSDYGIMIFADKRYNRLDKRNKL 686
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
P+WI ++ NLST+ A+ LSK +LR+M QPF+RE+ LG +L SL+ + ++ ++
Sbjct: 687 PQWILQFCQPQHLNLSTDMAISLSKTFLREMGQPFSREEQLGKSLWSLEHVEKQSTSKPP 746
Query: 936 EEE 938
+++
Sbjct: 747 QQQ 749
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 62/93 (66%), Gaps = 7/93 (7%)
Query: 564 CVVPDGVVCFFT---SYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLY 620
C+ P C T + + + F+ R D +V+RNYG LLV+++ +VPDG++CFFTSY Y
Sbjct: 482 CICP----CILTRGSDQISISTKFDVRSDTAVVRNYGALLVEVSAIVPDGIICFFTSYSY 537
Query: 621 LESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+E +V+ W + G+++N+ KL+F+ET D +S
Sbjct: 538 MEQIVSVWNEMGLLNNILTNKLIFVETSDPAES 570
>gi|224001022|ref|XP_002290183.1| nucleotide excision repair protein ERCC2 [Thalassiosira pseudonana
CCMP1335]
gi|220973605|gb|EED91935.1| nucleotide excision repair protein ERCC2 [Thalassiosira pseudonana
CCMP1335]
Length = 770
Score = 334 bits (856), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 171/429 (39%), Positives = 257/429 (59%), Gaps = 50/429 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDR------HKAGENIPVCDFYEKFDAVGREAPLAPGV 54
V +E D + +D C S+T+ ++ ++ + + C++Y+ F + G + GV
Sbjct: 120 VLRESDREGIDAACRSMTAPWAIEKAQKARQQQSAQVVETCEYYDGFQSAGEATSMPSGV 179
Query: 55 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 114
Y + +L++ G+ CPY+L RQAI HA ++V++Y Y+LDPK+A +VSKEL S++VFD
Sbjct: 180 YDLEELRKWGKNKNWCPYYLTRQAINHASVLVFNYQYMLDPKVAKMVSKELESESIIVFD 239
Query: 115 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRD 174
EAHNID+VC+++LSV I+ R +E+A ++ L + +K +D A+L+ EY LV GL D
Sbjct: 240 EAHNIDSVCIEALSVDIHERNLEQATRSLGRLSSEVSRIKASDGARLQAEYQNLVNGLVD 299
Query: 175 AQ--SARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQE 232
A V L++ VL +++ E VPGNIR AEHF+ F+K+ +E+LKTRLR
Sbjct: 300 QGLLDAPAAAVGLSSNVLSPDVINEAVPGNIRRAEHFIAFMKKIVEHLKTRLRA------ 353
Query: 233 SPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIE 292
S P +IS E+P FL + + +E
Sbjct: 354 ---------VSGPRGGVIS------------------------ETPLAFLHRMITTTSLE 380
Query: 293 RKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKG---FAIIVEPFSDKA 349
KPL+F RL+SLLRTL++ NL DF++L + A+LV++Y +G FAII+EP
Sbjct: 381 AKPLKFAYSRLSSLLRTLQVPNLDDFNALTDVADFASLVATYAEGLPRFAIIMEPNGSSI 440
Query: 350 PTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTL 409
P +PV+ CLD+SLAI P+F RF +VVITSGTLSP+D+YPK+L F+P + SF+M+
Sbjct: 441 PGALDPVIQLACLDASLAIAPLFKRFGSVVITSGTLSPIDLYPKLLQFEPCVSESFNMST 500
Query: 410 ARPCLLPMV 418
RPC+ P+V
Sbjct: 501 FRPCIRPLV 509
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 115/180 (63%), Gaps = 6/180 (3%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDR------HKAGENIPVCDFYEKFDAVGREAPLAPGV 709
V +E D + +D C S+T+ ++ ++ + + C++Y+ F + G + GV
Sbjct: 120 VLRESDREGIDAACRSMTAPWAIEKAQKARQQQSAQVVETCEYYDGFQSAGEATSMPSGV 179
Query: 710 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 769
Y + +L++ G+ CPY+L RQAI HA ++V++Y Y+LDPK+A +VSKEL S++VFD
Sbjct: 180 YDLEELRKWGKNKNWCPYYLTRQAINHASVLVFNYQYMLDPKVAKMVSKELESESIIVFD 239
Query: 770 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRD 829
EAHNID+VC+++LSV I+ R +E+A ++ L + +K +D A+L+ EY LV GL D
Sbjct: 240 EAHNIDSVCIEALSVDIHERNLEQATRSLGRLSSEVSRIKASDGARLQAEYQNLVNGLVD 299
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/142 (47%), Positives = 88/142 (61%), Gaps = 10/142 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ++ L VFFPY+ IY EQY YM LK+ LDA GHCLLEMP+GTGKT LLSLI +Y
Sbjct: 1 MRFNLEGLDVFFPYDRIYLEQYQYMRALKQTLDAGGHCLLEMPTGTGKTVCLLSLITSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+P + KL+YC+RTVPE+ V+EEL + Y + + L LSSR+N+CIH
Sbjct: 61 LANP-NCGKLVYCTRTVPEMNSVMEELGTVLAYRSEQLGAGSGVLALCLSSRRNMCIHER 119
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
V+R + +D AC
Sbjct: 120 --------VLRESDREGIDAAC 133
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ + L + + F+ RDD+ V+RNYG +LV++ +PDGVV FFTSY Y+ES
Sbjct: 504 CIRPL-VITRGSDQLPVSTKFDDRDDMGVVRNYGSMLVELCSSIPDGVVAFFTSYSYMES 562
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+++ W GI+ L K KL+FIET+D +++
Sbjct: 563 IISEWDGMGILRQLTKSKLVFIETKDVVET 592
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+MIFAD R+ R DKRSKLPKWI ++L D NLST+ A+ K +LR MAQ
Sbjct: 682 VIRSKIDYGLMIFADSRYNRHDKRSKLPKWILQFLGDGQLNLSTDTAIAQVKHFLRVMAQ 741
Query: 909 PFTREDMLGVALLSLDQL 926
P ++ L LL+LD++
Sbjct: 742 P-VDQNALKEVLLTLDEV 758
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%)
Query: 536 NLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRN 595
L + ++F+ RDD+ V+RNYG +LV++ +PDGVV FFTSY Y+ES+ D + ++R
Sbjct: 516 QLPVSTKFDDRDDMGVVRNYGSMLVELCSSIPDGVVAFFTSYSYMESIISEWDGMGILRQ 575
>gi|452820568|gb|EME27609.1| DNA excision repair protein ERCC-2 [Galdieria sulphuraria]
Length = 751
Score = 329 bits (844), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 170/431 (39%), Positives = 260/431 (60%), Gaps = 52/431 (12%)
Query: 11 DGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLC 70
D +C SLT+S VR+ + + +C +YE G + PGVYS++ L G E G+C
Sbjct: 109 DSKCRSLTASWVREGITSRSSDSLCPYYENLQQKGELFQIPPGVYSMSSLNAFGEEQGIC 168
Query: 71 PYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVR 130
PYF AR+++ +A I+VY+YHYLLDPKI+ ++S EL R VVVFDEAHNID+VC++++SV
Sbjct: 169 PYFTARRSLQYASIIVYNYHYLLDPKISRMISTELERDCVVVFDEAHNIDDVCIETMSVH 228
Query: 131 INRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVL 190
+ + TI++ N+ L G +++ K+ ++ +L EEY R++ G ++ ETD +LA PVL
Sbjct: 229 LKKDTIQRCYQNLNHLSGLVQDAKQRNAQQLLEEYQRVLRGTPFLATS-ETDALLAAPVL 287
Query: 191 PDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMI 250
PD LQE +PGNIR AEHF+ FL+R +EY VQ V+Q + AT
Sbjct: 288 PDSALQETIPGNIRKAEHFLRFLRRILEY------VQNVMQRNVAT-------------- 327
Query: 251 SEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTL 310
QE FL+ ++S + + K L+F ++RL SL++TL
Sbjct: 328 ------------------------QEKTGAFLQSMASLLQSDFKALKFSSDRLQSLIQTL 363
Query: 311 EITNLTDFSSLVVITHLATLVSSYTKG--FAIIVEPFSDKAPTVPNPVLYFCCLDSSLAI 368
+IT+L +F + + T++ SY G F +I EP+ ++ P++P+P+L CLD+SLA+
Sbjct: 364 QITHLLEFQPIQTLADFVTILGSYPTGNAFVVIFEPYDERYPSIPDPLLQLACLDASLAM 423
Query: 369 KPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMVRENYAMGLMI 428
+PVF RF++V++TSGT+SP+++Y +IL F PV S +M+ R + PM+ A
Sbjct: 424 QPVFSRFRSVILTSGTISPIELYSRILMFTPVTAKSLTMSFQRRNVCPMIVTRGA----- 478
Query: 429 DDLPVFFPYEY 439
D LPV Y+Y
Sbjct: 479 DQLPVSSKYDY 489
Score = 176 bits (446), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 125/186 (67%), Gaps = 1/186 (0%)
Query: 666 DGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLC 725
D +C SLT+S VR+ + + +C +YE G + PGVYS++ L G E G+C
Sbjct: 109 DSKCRSLTASWVREGITSRSSDSLCPYYENLQQKGELFQIPPGVYSMSSLNAFGEEQGIC 168
Query: 726 PYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVR 785
PYF AR+++ +A I+VY+YHYLLDPKI+ ++S EL R VVVFDEAHNID+VC++++SV
Sbjct: 169 PYFTARRSLQYASIIVYNYHYLLDPKISRMISTELERDCVVVFDEAHNIDDVCIETMSVH 228
Query: 786 INRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVL 845
+ + TI++ N+ L G +++ K+ ++ +L EEY R++ G ++ ETD +LA PVL
Sbjct: 229 LKKDTIQRCYQNLNHLSGLVQDAKQRNAQQLLEEYQRVLRGTPFLATS-ETDALLAAPVL 287
Query: 846 PDEILQ 851
PD LQ
Sbjct: 288 PDSALQ 293
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 65/96 (67%), Gaps = 5/96 (5%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M ELKK LDA GHC+LEMP+GTGKT +LLS VAY A + KL+YC+RTV EI+KV+
Sbjct: 1 MKELKKTLDAGGHCILEMPTGTGKTVTLLSFFVAYRAARA-SIGKLIYCTRTVGEIDKVL 59
Query: 508 EELARLFDYYIKHN----EEINMTGLVLSSRKNLCI 539
EEL R+ Y N E + + L++R+NLC+
Sbjct: 60 EELERVLAYRRDCNVDVASENQLVAVGLTTRRNLCL 95
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 61/80 (76%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ KTDYGIM+FADKRF R DK++KLPKW+ ++L D +LS + A+ ++ +L+Q+AQ
Sbjct: 646 VIRSKTDYGIMVFADKRFNRPDKKNKLPKWVLQFLDDAHCDLSVDMAISIASAFLKQIAQ 705
Query: 909 PFTREDMLGVALLSLDQLLE 928
PF + G+AL+S +QLLE
Sbjct: 706 PFHADAGTGIALISEEQLLE 725
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 58/75 (77%)
Query: 578 LYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNL 637
L + S ++ R D SV+RNYG L++++A +VPDG+VCFFTSY+Y+E+++ W++ GII +
Sbjct: 481 LPVSSKYDYRHDPSVVRNYGTLVMEMARIVPDGIVCFFTSYIYMETMIQLWHEMGIIKKI 540
Query: 638 QKRKLLFIETQDALD 652
+ KL+FIET D L+
Sbjct: 541 SEYKLIFIETPDNLE 555
>gi|219112193|ref|XP_002177848.1| xeroderma pigmentosum group D complementing protein [Phaeodactylum
tricornutum CCAP 1055/1]
gi|217410733|gb|EEC50662.1| xeroderma pigmentosum group D complementing protein [Phaeodactylum
tricornutum CCAP 1055/1]
Length = 782
Score = 329 bits (844), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 176/429 (41%), Positives = 254/429 (59%), Gaps = 55/429 (12%)
Query: 1 VSKERDGKIVDGRCHSLTSSSV-RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 59
V E D + VD C SLT+S V + K +I C +Y+ F A G + GVY + +
Sbjct: 137 VMAESDREAVDAACRSLTASWVLEEAQKRPGSIETCSYYDNFHAAGESTSMPSGVYDLEE 196
Query: 60 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
L++ G+ G CPY+L RQAI HA I+V++Y Y+LDPK+A +VSKEL S+VVFDEAHNI
Sbjct: 197 LQKWGKRRGWCPYYLTRQAINHANILVFNYQYMLDPKVAKMVSKELEAESIVVFDEAHNI 256
Query: 120 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQ--S 177
D+VC+++LSV IN R +E+A ++ L + +K +D+ +L+ EY LV GL D
Sbjct: 257 DSVCIEALSVTINDRGLEQATRSLGRLSSEVSRLKASDNQRLQTEYQNLVNGLIDQGLLD 316
Query: 178 ARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRV-----QQVVQE 232
A D L + VL ++L E VPGNIR AEHF+GF+K+ +E+LK RLR V E
Sbjct: 317 APANDAGLTSNVLNPDVLNEAVPGNIRRAEHFIGFMKKVVEHLKARLRSVAGPNGGVRSE 376
Query: 233 SPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIE 292
+P FL +++ S+ ++ R+ +S
Sbjct: 377 TPLAFLHRMTN--GTSLEAKPLRFAYS--------------------------------- 401
Query: 293 RKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKG---FAIIVEPFSDKA 349
RL+SLLRTL+++NL DF+SL + ++L+++Y++G FAII+EP
Sbjct: 402 ---------RLSSLLRTLQVSNLDDFNSLTDVADFSSLLAAYSEGVAKFAIIMEPNGSSI 452
Query: 350 PTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTL 409
P +PV+ CLDSSLAI P+F RF +V+ITSGTLSP+D+YPK+L F+P + S SM+
Sbjct: 453 PGATDPVIQLVCLDSSLAIAPLFKRFGSVIITSGTLSPIDLYPKLLQFEPCVSESLSMST 512
Query: 410 ARPCLLPMV 418
RPC+ P+V
Sbjct: 513 FRPCIRPLV 521
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 123/199 (61%), Gaps = 3/199 (1%)
Query: 656 VSKERDGKIVDGRCHSLTSSSV-RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
V E D + VD C SLT+S V + K +I C +Y+ F A G + GVY + +
Sbjct: 137 VMAESDREAVDAACRSLTASWVLEEAQKRPGSIETCSYYDNFHAAGESTSMPSGVYDLEE 196
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L++ G+ G CPY+L RQAI HA I+V++Y Y+LDPK+A +VSKEL S+VVFDEAHNI
Sbjct: 197 LQKWGKRRGWCPYYLTRQAINHANILVFNYQYMLDPKVAKMVSKELEAESIVVFDEAHNI 256
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQ--S 832
D+VC+++LSV IN R +E+A ++ L + +K +D+ +L+ EY LV GL D
Sbjct: 257 DSVCIEALSVTINDRGLEQATRSLGRLSSEVSRLKASDNQRLQTEYQNLVNGLIDQGLLD 316
Query: 833 ARETDVVLANPVLPDEILQ 851
A D L + VL ++L
Sbjct: 317 APANDAGLTSNVLNPDVLN 335
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 91/159 (57%), Gaps = 27/159 (16%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M +D L VFFPY+ IY EQ+ YM LK++LDA GHCLLEMP+GTGKT LLSLI +Y
Sbjct: 1 MRFDLDGLDVFFPYDRIYLEQHQYMRALKQSLDAGGHCLLEMPTGTGKTVCLLSLITSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY----YIKHNEE----INMTG------- 528
A+P KL+YC+RTVPE+ V+EELA + Y +H EE ++ G
Sbjct: 61 FANP-SAGKLVYCTRTVPEMNHVMEELATVLAYRSQELQRHQEENILPMDTDGDIENVPV 119
Query: 529 ---LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
L LSSR+N+C+H D VD AC
Sbjct: 120 AGTLCLSSRRNMCVHERVMAESDREA--------VDAAC 150
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ KTDYG+MIFAD R+ R DKRSKLPKWIQ++++D+ NLST+ A+ K++LR M Q
Sbjct: 694 VIRSKTDYGLMIFADSRYNRHDKRSKLPKWIQQFMSDHFLNLSTDMALSHVKQFLRLMGQ 753
Query: 909 PFTREDMLGVALLSLDQLLEKEHARAEE 936
P +E L L SL + EK+ A E+
Sbjct: 754 PIDQE-ALQSNLPSLSVVPEKDRAHPEQ 780
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ + L + + +E R D+ VIRNYG +LV++ +PDGVV FFTSY Y+ES
Sbjct: 516 CIRP-LVITKGSDQLAVSTKYEDRGDMGVIRNYGTMLVELCSTIPDGVVAFFTSYSYMES 574
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+++ W GI+ L K KL+FIET+D +++
Sbjct: 575 LISEWDAIGILRELTKSKLVFIETKDVVET 604
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRD 588
++ L + +++E R D+ VIRNYG +LV++ +PDGVV FFTSY Y+ES+ D
Sbjct: 521 VITKGSDQLAVSTKYEDRGDMGVIRNYGTMLVELCSTIPDGVVAFFTSYSYMESLISEWD 580
Query: 589 DISVIR 594
I ++R
Sbjct: 581 AIGILR 586
>gi|66827895|ref|XP_647302.1| transcription factor IIH component [Dictyostelium discoideum AX4]
gi|74859460|sp|Q55G81.1|ERCC2_DICDI RecName: Full=TFIIH basal transcription factor complex helicase
repD subunit; AltName: Full=DNA excision repair
cross-complementing protein-2 homolog; AltName: Full=DNA
repair protein D
gi|60475224|gb|EAL73159.1| transcription factor IIH component [Dictyostelium discoideum AX4]
Length = 776
Score = 328 bits (842), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 167/418 (39%), Positives = 251/418 (60%), Gaps = 50/418 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS+ERDGK+VD C LTSS R+ + + C F+E F++ G+E L GVYS+ L
Sbjct: 120 VSEERDGKVVDALCRELTSSWNRESPTSEK----CKFFENFESNGKEI-LLEGVYSLEDL 174
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE G + +CPYFL+R + A IV++SY YLLDPKIA+++S +S+VVFDEAHNID
Sbjct: 175 KEYGLKHQMCPYFLSRHMLNFANIVIFSYQYLLDPKIASLISSSFPSNSIVVFDEAHNID 234
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+++LS+ I+ + ++ + NI + ++++K+ D +L++EY RLV GL + S R
Sbjct: 235 NVCINALSINIDNKLLDTSSKNIAKINKQIEDIKKVDEKRLKDEYQRLVNGLARSGSTR- 293
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D ++PVLP++++QE VPGNIR AEHF+ L+R ++YLK+RL+ Q ++ ESP FL+
Sbjct: 294 ADETTSDPVLPNDVIQEAVPGNIRKAEHFISLLRRVVDYLKSRLKSQMLLSESPLAFLQG 353
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ A + S R+ S L LR+ V Q
Sbjct: 354 LYH--ATQISSRTLRFCSSRLSSLLRTLRINDVNQ------------------------- 386
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
FS + +I ATLV +Y GF II+EP+ + + + FC
Sbjct: 387 -----------------FSGISLIADFATLVGTYNNGFLIIIEPYYQRQNNTYDQIFQFC 429
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+S+ +KP+FD++++VVITSGTLSPLD+Y K+LNF+P ++ +M+L R C+ P +
Sbjct: 430 CLDASIGMKPIFDKYRSVVITSGTLSPLDIYTKMLNFRPTVVERLTMSLNRNCICPCI 487
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 133/196 (67%), Gaps = 6/196 (3%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS+ERDGK+VD C LTSS R+ + + C F+E F++ G+E L GVYS+ L
Sbjct: 120 VSEERDGKVVDALCRELTSSWNRESPTSEK----CKFFENFESNGKEI-LLEGVYSLEDL 174
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
KE G + +CPYFL+R + A IV++SY YLLDPKIA+++S +S+VVFDEAHNID
Sbjct: 175 KEYGLKHQMCPYFLSRHMLNFANIVIFSYQYLLDPKIASLISSSFPSNSIVVFDEAHNID 234
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVC+++LS+ I+ + ++ + NI + ++++K+ D +L++EY RLV GL + S R
Sbjct: 235 NVCINALSINIDNKLLDTSSKNIAKINKQIEDIKKVDEKRLKDEYQRLVNGLARSGSTR- 293
Query: 836 TDVVLANPVLPDEILQ 851
D ++PVLP++++Q
Sbjct: 294 ADETTSDPVLPNDVIQ 309
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/134 (51%), Positives = 85/134 (63%), Gaps = 10/134 (7%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M I+DL V+FPY YIYPEQY+YMV LK++LD G C+LEMPSGTGKT SLLSLI +Y
Sbjct: 1 MKFYIEDLLVYFPYSYIYPEQYSYMVALKRSLDNGGPCILEMPSGTGKTVSLLSLISSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTG-----LVLSSRKNLC 538
+P KL+YCSRTVPEIE+ EE R+ Y N E+ + +SSR+NLC
Sbjct: 61 VKNP--SIKLIYCSRTVPEIEQATEEARRVLQY---RNSEMGEESPKTLCMSMSSRRNLC 115
Query: 539 IHSEFETRDDISVI 552
I D V+
Sbjct: 116 IQPRVSEERDGKVV 129
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 81/123 (65%), Gaps = 6/123 (4%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE + + + + +++GK+DYGIMIFADKR+ R DKR+KL
Sbjct: 628 ARL-EFLRDRYQIRENEFLTFDAMRTASQCVGRVIRGKSDYGIMIFADKRYNRLDKRNKL 686
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
P+WI ++ NLST+ A+ LSK +LR+M QPF+RE+ LG +L SL+ + ++ ++
Sbjct: 687 PQWILQFCQPQHLNLSTDMAISLSKTFLREMGQPFSREEQLGKSLWSLEHVEKQSTSKPP 746
Query: 936 EEE 938
+++
Sbjct: 747 QQQ 749
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 62/93 (66%), Gaps = 7/93 (7%)
Query: 564 CVVPDGVVCFFT---SYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLY 620
C+ P C T + + + F+ R D +V+RNYG LLV+++ +VPDG++CFFTSY Y
Sbjct: 482 CICP----CILTRGSDQISISTKFDVRSDTAVVRNYGALLVEVSAIVPDGIICFFTSYSY 537
Query: 621 LESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+E +V+ W + G+++N+ KL+F+ET D +S
Sbjct: 538 MEQIVSVWNEMGLLNNILTNKLIFVETSDPAES 570
>gi|397624872|gb|EJK67551.1| hypothetical protein THAOC_11394 [Thalassiosira oceanica]
Length = 797
Score = 326 bits (835), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 172/441 (39%), Positives = 255/441 (57%), Gaps = 66/441 (14%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHK------------------AGENIPVCDFYEKFD 42
V +E D + +D C SLT+S + K G++ C ++++F
Sbjct: 156 VLRESDREGIDSACRSLTASWALEARKKKSGRGGPPGGSGTAAARGGDDENCCTYFDQFR 215
Query: 43 AVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVS 102
G + G+Y + LKE G+ G CPY+L RQAI HA ++ ++Y Y+LDPK+A +VS
Sbjct: 216 EAGEAISMPSGIYDLESLKEWGKGRGWCPYYLTRQAINHANVLCFNYQYMLDPKVAKMVS 275
Query: 103 KELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLR 162
KEL S+VVFDEAHNID+VC+++ SV I+ R++E+A ++ L G + +K +D+++LR
Sbjct: 276 KELEAESIVVFDEAHNIDSVCIEAFSVSIHARSLEQATRSLGRLSGEINRVKASDASRLR 335
Query: 163 EEYARLVEGLRDAQ--SARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYL 220
EY LV+GL + +V L + VL ++++ E VPGNIR AEHFV F+K+ +E+L
Sbjct: 336 NEYQNLVQGLVEQGLLGGASDEVALESSVLSNDVISEAVPGNIRRAEHFVAFMKKVVEHL 395
Query: 221 KTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPAT 280
K RLR + P+ V E+P
Sbjct: 396 KARLR-----------------TVGGPT----------------------GGVSSETPLA 416
Query: 281 FLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKG--- 337
FL + + +E KPL+F RL+SLLRTL++T+L DF SL + LA+LV++Y +G
Sbjct: 417 FLHRMVTATGVEAKPLKFAYTRLSSLLRTLQVTSLDDFRSLTDVADLASLVATYAEGLPR 476
Query: 338 FAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNF 397
FAII+EP + P + CLDSSLAI P+F RF +V+ITSGTLSP+D+YPK+L F
Sbjct: 477 FAIIMEPVGQ----LSEPSIELACLDSSLAIAPLFKRFGSVIITSGTLSPIDLYPKLLQF 532
Query: 398 QPVIMHSFSMTLARPCLLPMV 418
+P + SFSM+ RPC+ P++
Sbjct: 533 EPCVSESFSMSTFRPCIRPLI 553
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 128/218 (58%), Gaps = 20/218 (9%)
Query: 653 SRSVSKERDGKIVDGRCHSLTSSSVRDRHK------------------AGENIPVCDFYE 694
++ V +E D + +D C SLT+S + K G++ C +++
Sbjct: 153 NKRVLRESDREGIDSACRSLTASWALEARKKKSGRGGPPGGSGTAAARGGDDENCCTYFD 212
Query: 695 KFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIAN 754
+F G + G+Y + LKE G+ G CPY+L RQAI HA ++ ++Y Y+LDPK+A
Sbjct: 213 QFREAGEAISMPSGIYDLESLKEWGKGRGWCPYYLTRQAINHANVLCFNYQYMLDPKVAK 272
Query: 755 VVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSA 814
+VSKEL S+VVFDEAHNID+VC+++ SV I+ R++E+A ++ L G + +K +D++
Sbjct: 273 MVSKELEAESIVVFDEAHNIDSVCIEAFSVSIHARSLEQATRSLGRLSGEINRVKASDAS 332
Query: 815 KLREEYARLVEGLRDAQ--SARETDVVLANPVLPDEIL 850
+LR EY LV+GL + +V L + VL ++++
Sbjct: 333 RLRNEYQNLVQGLVEQGLLGGASDEVALESSVLSNDVI 370
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P ++ + L + + F+ R D+ V+RNYG +LV++ VPDGVV FFTSY Y+ES
Sbjct: 548 CIRPL-IITRGSDQLPVSTKFQDRGDLGVVRNYGSMLVEVCAAVPDGVVAFFTSYAYMES 606
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+++ W GI+ L K KL+F+ET+D +++
Sbjct: 607 IISEWDGMGIMRRLAKSKLIFVETKDVVET 636
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M LK+ LDA GH LLEMP+GTGKT LLSLI +Y +A+P KL+YC+RTVPE++ V+
Sbjct: 1 MRALKRTLDAGGHSLLEMPTGTGKTVCLLSLITSYQHANP-GCGKLVYCTRTVPEMDSVM 59
Query: 508 EELARLFDY 516
+EL + Y
Sbjct: 60 QELGNVLGY 68
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRD 588
++ L + ++F+ R D+ V+RNYG +LV++ VPDGVV FFTSY Y+ES+ D
Sbjct: 553 IITRGSDQLPVSTKFQDRGDLGVVRNYGSMLVEVCAAVPDGVVAFFTSYAYMESIISEWD 612
Query: 589 DISVIR 594
+ ++R
Sbjct: 613 GMGIMR 618
>gi|323456743|gb|EGB12609.1| hypothetical protein AURANDRAFT_51952 [Aureococcus anophagefferens]
Length = 760
Score = 321 bits (822), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 171/418 (40%), Positives = 249/418 (59%), Gaps = 48/418 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V ++ D VD C +T+S R R A + C F+E +D G EA + GVY + L
Sbjct: 123 VVRDADRDRVDVECRKMTASWARSRDDAEK----CPFFEAWDEAGTEAEVPDGVYDVDDL 178
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ +G+ G CPYFLAR AI HA ++VY+Y Y+LDPK+A +VS+EL SVVVFDE HNID
Sbjct: 179 RVLGKAKGWCPYFLARHAIAHANVIVYNYQYMLDPKVAGLVSRELEAESVVVFDEGHNID 238
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
N+C+++LSV ++ R +++A + L ++ ++ +D+ ++R EY RLV GLR A S
Sbjct: 239 NICIEALSVELDARRLDQAQRCVARLARSVDALRASDAGRVRAEYDRLVSGLRAAGSLPG 298
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
++ A+PVLP ++L E VPGN+R AEHF+ L+ + +LK +L +V ESPA FL
Sbjct: 299 DELGGASPVLPQDVLDEAVPGNVRKAEHFLRLLRVLVLHLKKKLAGTRVAVESPAAFL-- 356
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
L +QQ ++ KPL+F
Sbjct: 357 ---------------------------LGLQQATG---------------LDAKPLKFFH 374
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
RL LLRT+E L D ++L + + A++VS+Y GF+++ +P S +P L
Sbjct: 375 TRLHQLLRTVEAAGLEDSAALGDVANFASIVSTYDDGFSVVADPTSRGPSGLPQARLDLA 434
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+SLAIKPV +RF++VVITSGTLSPL++YPK+LNF PV+ S M++ RPC+LP+V
Sbjct: 435 CLDASLAIKPVLERFRSVVITSGTLSPLELYPKLLNFSPVVRESLQMSIFRPCILPLV 492
Score = 173 bits (438), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 126/195 (64%), Gaps = 4/195 (2%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
V ++ D VD C +T+S R R A + C F+E +D G EA + GVY + L
Sbjct: 123 VVRDADRDRVDVECRKMTASWARSRDDAEK----CPFFEAWDEAGTEAEVPDGVYDVDDL 178
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
+ +G+ G CPYFLAR AI HA ++VY+Y Y+LDPK+A +VS+EL SVVVFDE HNID
Sbjct: 179 RVLGKAKGWCPYFLARHAIAHANVIVYNYQYMLDPKVAGLVSRELEAESVVVFDEGHNID 238
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
N+C+++LSV ++ R +++A + L ++ ++ +D+ ++R EY RLV GLR A S
Sbjct: 239 NICIEALSVELDARRLDQAQRCVARLARSVDALRASDAGRVRAEYDRLVSGLRAAGSLPG 298
Query: 836 TDVVLANPVLPDEIL 850
++ A+PVLP ++L
Sbjct: 299 DELGGASPVLPQDVL 313
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/145 (48%), Positives = 94/145 (64%), Gaps = 13/145 (8%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M +D+L VFFPY+ +YPEQ+ Y+ ELKKALDA+GH LLEMP+GTGKT LL+LI AY
Sbjct: 1 MRFQLDELDVFFPYDALYPEQFTYICELKKALDAEGHALLEMPTGTGKTACLLTLITAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN----EEINMTGLVLSSRKNLCI 539
AHP ++ KL+YC+RTVPE+EK + EL RL Y + L LSSR+N+C+
Sbjct: 61 YAHP-EMGKLIYCTRTVPEMEKCLAELKRLRAYRDAQRGVGASKAPFLALCLSSRRNMCV 119
Query: 540 HSEFETRDDISVIRNYGQLLVDIAC 564
H V+R+ + VD+ C
Sbjct: 120 HER--------VVRDADRDRVDVEC 136
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 52/67 (77%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ KTDYGI+I AD RFAR DKRSKLP W+Q+++TD NLS++ A+ +++ +L+QMAQ
Sbjct: 665 VIRSKTDYGIVILADARFARHDKRSKLPGWVQQFMTDANLNLSSDAALAITRTFLKQMAQ 724
Query: 909 PFTREDM 915
P D+
Sbjct: 725 PIDDRDL 731
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Query: 551 VIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDG 610
V+R Q+ + C++P VV + + FE+RDD SV+RN+GQLL + VPDG
Sbjct: 474 VVRESLQMSIFRPCILP-LVVTKGADQQPVSTRFESRDDASVVRNFGQLLAGLCGDVPDG 532
Query: 611 VVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+V FF SY Y+E V +W + G++ + + KLLF+ET+D +++
Sbjct: 533 MVVFFPSYSYMERTVTTWDELGVLRKVAEHKLLFVETKDVVET 575
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQ 598
+ + FE+RDD SV+RN+GQLL + VPDG+V FF SY Y+E T D++ V+R +
Sbjct: 502 VSTRFESRDDASVVRNFGQLLAGLCGDVPDGMVVFFPSYSYMERTVTTWDELGVLRKVAE 561
>gi|313247490|emb|CBY15705.1| unnamed protein product [Oikopleura dioica]
Length = 760
Score = 320 bits (820), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 166/415 (40%), Positives = 253/415 (60%), Gaps = 50/415 (12%)
Query: 7 GKI-VDGRCHSLTSSSVRDRHKAGENI--PVCDFYEKFDAVGREAPLAPGVYSITKLKEM 63
G+I VD C T++ R K N P C ++E + A L +Y++ +KE
Sbjct: 125 GRIEVDTECRRRTATFARRNAKMSPNAENPSCSYFENLENSTLSAKLPRTIYNLEDIKEF 184
Query: 64 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 123
G+E +CPYF+AR+AI A +V+YSY+YLLDPKI++VVSK L R+S+VVFDEAHNID+VC
Sbjct: 185 GKEETICPYFMAREAINLADVVIYSYNYLLDPKISSVVSKSLPRNSIVVFDEAHNIDSVC 244
Query: 124 VDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDV 183
+ SLSV+I +RTIE+A ++ L + E + +L +EY RLV GLR+A+ + +
Sbjct: 245 IKSLSVKITKRTIERASDGLEKLTARVDEFSISKKEELEDEYDRLVRGLREARQNEDAGL 304
Query: 184 VLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISS 243
P+LPD++L +PG+IR A F ++KR +EY RLR+QQ +QESP +FL+D
Sbjct: 305 G-GPPILPDDVLTTAIPGSIRKAPIFCKWVKRLLEYCGHRLRIQQAIQESPLSFLRD--- 360
Query: 244 KPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERL 303
I +VCI+RK LR ERL
Sbjct: 361 -----------------------------------------IEERVCIDRKSLRIAGERL 379
Query: 304 ASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLD 363
+L+ TLE+ +L+ + I ++A L ++YT+GFAI+ E ++ +P+P + CLD
Sbjct: 380 QNLIITLEMVDLSGLKEVNDIINMAALAATYTEGFAILFEAIDERG--IPDPRIQLACLD 437
Query: 364 SSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
+SL ++P+F ++Q+V+ITSGTLSP++MYP++L+FQPV+M S ++++AR + PM+
Sbjct: 438 ASLVMRPIFRKYQSVLITSGTLSPIEMYPRLLDFQPVVMTSLALSMARGAICPMI 492
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 116/356 (32%), Positives = 179/356 (50%), Gaps = 39/356 (10%)
Query: 571 VCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV--VCFFTSY-----LYLES 623
V F Y+Y E + R+ I N G L+++ C V + F +Y LE
Sbjct: 10 VLFPFDYVYPEQLAYMRELKYSIENRGHALIEMPCGTGKTVTILSFLLAYKKAHPASLEK 69
Query: 624 VVASWYD----QGIIDNLQKRKLLFIETQDALD--SRSVSKERD-----------GKI-V 665
++ +++ L+ + + LD S S+S ++ G+I V
Sbjct: 70 IIYCTRTVPELTKVVEELRDLVKFYADNDQHLDILSMSLSSRQNLCINSEVTSCGGRIEV 129
Query: 666 DGRCHSLTSSSVRDRHKAGENI--PVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELG 723
D C T++ R K N P C ++E + A L +Y++ +KE G+E
Sbjct: 130 DTECRRRTATFARRNAKMSPNAENPSCSYFENLENSTLSAKLPRTIYNLEDIKEFGKEET 189
Query: 724 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 783
+CPYF+AR+AI A +V+YSY+YLLDPKI++VVSK L R+S+VVFDEAHNID+VC+ SLS
Sbjct: 190 ICPYFMAREAINLADVVIYSYNYLLDPKISSVVSKSLPRNSIVVFDEAHNIDSVCIKSLS 249
Query: 784 VRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANP 843
V+I +RTIE+A ++ L + E + +L +EY RLV GLR+A+ + + P
Sbjct: 250 VKITKRTIERASDGLEKLTARVDEFSISKKEELEDEYDRLVRGLREARQNEDAGLG-GPP 308
Query: 844 VLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLS 899
+LPD++L I K KW++ L L ++A+Q S
Sbjct: 309 ILPDDVLTTAIPGSIR-----------KAPIFCKWVKRLLEYCGHRLRIQQAIQES 353
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 98/141 (69%), Gaps = 8/141 (5%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L I+ +PV FP++Y+YPEQ AYM ELK +++ +GH L+EMP GTGKT ++LS ++AY
Sbjct: 1 MHLDIEGIPVLFPFDYVYPEQLAYMRELKYSIENRGHALIEMPCGTGKTVTILSFLLAYK 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEF 543
AHP + K++YC+RTVPE+ KVVEEL L +Y +++ +++ + LSSR+NLCI+SE
Sbjct: 61 KAHPASLEKIIYCTRTVPELTKVVEELRDLVKFYADNDQHLDILSMSLSSRQNLCINSE- 119
Query: 544 ETRDDISVIRNYGQLLVDIAC 564
V G++ VD C
Sbjct: 120 -------VTSCGGRIEVDTEC 133
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 75/117 (64%), Gaps = 5/117 (4%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S F+ R+D SV+RNYG LLV+I VVPDGVV FFTSY YLE+VV+ W + GII+ +QK
Sbjct: 502 LSSKFDEREDPSVLRNYGNLLVEICGVVPDGVVVFFTSYSYLENVVSMWNETGIIEGIQK 561
Query: 640 RKLLFIETQDALD-SRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
K++F E+ D + S+++S+ R+ +GR L S + R K E I Y +
Sbjct: 562 NKIIFCESSDITETSQALSRYREA-CDEGRGAVLLSVA---RGKVSEGIDFSGHYGR 614
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 55/76 (72%)
Query: 850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQP 909
++ K+DYGIM+ AD RF K +KLPKW+ + L+ +LS E+++ LSK++LRQMAQP
Sbjct: 666 IRAKSDYGIMLLADVRFGTPGKYNKLPKWLTDSLSQGSLSLSIEDSIALSKKFLRQMAQP 725
Query: 910 FTREDMLGVALLSLDQ 925
F R LG++LL+ +Q
Sbjct: 726 FPRSAQLGISLLNAEQ 741
>gi|281204292|gb|EFA78488.1| transcription factor IIH component [Polysphondylium pallidum PN500]
Length = 694
Score = 317 bits (812), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 151/334 (45%), Positives = 220/334 (65%), Gaps = 49/334 (14%)
Query: 85 VVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 144
+++SY Y+LDPKI+++VS + A +S+VVFDEAHNIDNVC+++LS+ I+ +TIE A N+
Sbjct: 112 LIFSYQYMLDPKISSLVSSQFASNSIVVFDEAHNIDNVCINALSINIDNQTIENATKNLT 171
Query: 145 TLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIR 204
+ ++ +K+ D+ +L+ EY +LV+GL AR D + A+P+LP+E++ EVVPGNIR
Sbjct: 172 KINNGIENLKKVDAERLKNEYVKLVQGL-----ARSGDTMSADPLLPNEVINEVVPGNIR 226
Query: 205 TAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHL 264
AEHFV L+RFI+YL++RLR Q VV ESP +FL+ +S
Sbjct: 227 KAEHFVSVLRRFIDYLRSRLRTQMVVSESPLSFLRSLSQ--------------------- 265
Query: 265 KTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVI 324
L IS+K LRFC+ RL+SLLRTL+I++L FSS+ VI
Sbjct: 266 -----------------LTTISAKT------LRFCSSRLSSLLRTLQISDLNQFSSISVI 302
Query: 325 THLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGT 384
ATLV +Y GF II+EP+ K P +P+ FCCLD+S+ +KP+FD++++V+ITSGT
Sbjct: 303 ADFATLVGTYGNGFIIIIEPYDQKTPNQYDPIFQFCCLDASIGMKPIFDKYKSVIITSGT 362
Query: 385 LSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
LSP+D+Y KILNF+P ++ SM+L R C+ P +
Sbjct: 363 LSPIDIYQKILNFRPSLVEQLSMSLHRSCICPCI 396
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 70/93 (75%), Gaps = 2/93 (2%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID+L V+FPY YIYPEQY YMV LKKALDA G C+LEMPSGTGKT SLLSLI +Y
Sbjct: 1 MKFKIDELDVYFPYAYIYPEQYNYMVALKKALDAGGPCMLEMPSGTGKTVSLLSLISSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY 516
HP KL+YCSRTVPEIE+ +EE R+ Y
Sbjct: 61 VVHP--TAKLIYCSRTVPEIEQAMEEARRVLTY 91
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 83/112 (74%), Gaps = 5/112 (4%)
Query: 740 VVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 799
+++SY Y+LDPKI+++VS + A +S+VVFDEAHNIDNVC+++LS+ I+ +TIE A N+
Sbjct: 112 LIFSYQYMLDPKISSLVSSQFASNSIVVFDEAHNIDNVCINALSINIDNQTIENATKNLT 171
Query: 800 TLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
+ ++ +K+ D+ +L+ EY +LV+GL AR D + A+P+LP+E++
Sbjct: 172 KINNGIENLKKVDAERLKNEYVKLVQGL-----ARSGDTMSADPLLPNEVIN 218
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++GK+DYGIMIFADKR+ R DKR+KLP+WI ++ NLST+ AV LS+ +L+ MAQ
Sbjct: 569 VIRGKSDYGIMIFADKRYNRLDKRNKLPQWILQFCQPQHLNLSTDMAVALSRAFLKDMAQ 628
Query: 909 PFTREDMLGVALLSLDQLLEKEHAR 933
P++RE+ LG +L +L Q LEK +
Sbjct: 629 PYSREEQLGKSLWNL-QNLEKHQEK 652
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 10/128 (7%)
Query: 563 ACVVPDGVVCFFT---SYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYL 619
+C+ P C T + + + F+ R D +VIRNYG LLV+++ +VPDG++CFFTSY
Sbjct: 390 SCICP----CILTRGSDQISVSTKFDVRADTAVIRNYGALLVEMSAIVPDGIICFFTSYS 445
Query: 620 YLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRD 679
Y+E +V+ W + G+++N+ KL+F+ET DA +S + GR L S +
Sbjct: 446 YMEQIVSVWNEMGLLNNILNNKLIFVETSDAAESALALQNYKKACDSGRGAVLLSVA--- 502
Query: 680 RHKAGENI 687
R K E I
Sbjct: 503 RGKVSEGI 510
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 41/55 (74%)
Query: 537 LCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDIS 591
+ + ++F+ R D +VIRNYG LLV+++ +VPDG++CFFTSY Y+E + +++
Sbjct: 404 ISVSTKFDVRADTAVIRNYGALLVEMSAIVPDGIICFFTSYSYMEQIVSVWNEMG 458
>gi|406700501|gb|EKD03668.1| general RNA polymerase II transcription factor [Trichosporon asahii
var. asahii CBS 8904]
Length = 550
Score = 305 bits (782), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 155/339 (45%), Positives = 213/339 (62%), Gaps = 52/339 (15%)
Query: 81 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC-VDSLSVRINRRTIEKA 139
+ +++YS+HYLLDPK+A VS EL++ ++VVFDEAHNI + D R + R++ K
Sbjct: 3 YVDVIIYSFHYLLDPKVAEQVSAELSKEAIVVFDEAHNIGELSNADLADTRQSARSVAK- 61
Query: 140 VGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEVV 199
+G+ + E+K++D+ KL EY +LV+GL A RE D +L+NPVL ++++QE +
Sbjct: 62 IGD------KIDEIKKSDAEKLNAEYQKLVDGLAAANDRREEDDMLSNPVLSEDMIQEAI 115
Query: 200 PGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFS 259
PGNIR AEHF+ FLKRFIEY
Sbjct: 116 PGNIRKAEHFIAFLKRFIEY---------------------------------------- 135
Query: 260 TEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFS 319
LKTR+RV VV E+P +F+ + IE++PL+FCAERL SL+RTLE+TNL +
Sbjct: 136 ----LKTRMRVLHVVAETPQSFMAHLKEITFIEKRPLQFCAERLTSLIRTLELTNLDEHF 191
Query: 320 SLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVV 379
+L I TLV++Y KGF +I+EP+ + TVPNP+ +F CLD SLA+ PVF+RF +V+
Sbjct: 192 ALQKIASFGTLVATYEKGFLLILEPYETEHATVPNPIFHFTCLDPSLAMAPVFERFSSVI 251
Query: 380 ITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
ITSGT+SPLDMYPK+L FQPVI S+ MTL R LPMV
Sbjct: 252 ITSGTISPLDMYPKMLQFQPVIQESYPMTLTRNAFLPMV 290
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 79/124 (63%), Gaps = 6/124 (4%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D +V+RN+G +L+D+A VPDGVV FF SYLY+ES+V++WYD GI+ + K
Sbjct: 300 ISSRFEVRNDPAVVRNFGSILIDMAKTVPDGVVAFFPSYLYMESIVSAWYDMGILSEVWK 359
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAV 699
KLLF+ET DA+++ S++ + + + R +RD H+ EN Y FDA+
Sbjct: 360 HKLLFVETPDAMET-SIALKNYREYTESRILKARLEFLRDNHRIREND-----YLTFDAM 413
Query: 700 GREA 703
A
Sbjct: 414 RHAA 417
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 78/117 (66%), Gaps = 8/117 (6%)
Query: 736 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC-VDSLSVRINRRTIEKA 794
+ +++YS+HYLLDPK+A VS EL++ ++VVFDEAHNI + D R + R++ K
Sbjct: 3 YVDVIIYSFHYLLDPKVAEQVSAELSKEAIVVFDEAHNIGELSNADLADTRQSARSVAK- 61
Query: 795 VGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
+G+ + E+K++D+ KL EY +LV+GL A RE D +L+NPVL ++++Q
Sbjct: 62 IGD------KIDEIKKSDAEKLNAEYQKLVDGLAAANDRREEDDMLSNPVLSEDMIQ 112
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 78/123 (63%), Gaps = 12/123 (9%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + +L+GKTD+G+M+FADK DKR+KL
Sbjct: 391 ARL-EFLRDNHRIRENDYLTFDAMRHAAQCVGRVLRGKTDWGLMVFADK-----DKRAKL 444
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAE 935
P+WI +Y+TD +NLST+ AV L+K+++R ++QPF G++L +L+ + E++ E
Sbjct: 445 PRWINQYITDAHSNLSTDMAVVLAKKFIRNISQPFDHT-QTGISLWTLEDIEERQRKDRE 503
Query: 936 EEE 938
E E
Sbjct: 504 EAE 506
>gi|403338080|gb|EJY68268.1| hypothetical protein OXYTRI_11217 [Oxytricha trifallax]
Length = 779
Score = 305 bits (781), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 160/450 (35%), Positives = 263/450 (58%), Gaps = 77/450 (17%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRD---RHKAG-------------------------ENI 32
VSK+ D + VD +C LT+S VR+ + + G +N+
Sbjct: 120 VSKDDDRERVDSKCRQLTASWVREDALQQRGGSSVFLNNDTSSKIMTNVIPDIEDLHKNM 179
Query: 33 PVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYL 92
+C FYE F + + GVY++ L+ G++ +CPYFLAR ++ A I+VY+Y Y+
Sbjct: 180 KLCAFYETFWNRADQFTMPKGVYTLEDLRAFGKKHKMCPYFLARHFLLQANIIVYNYAYM 239
Query: 93 LDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE 152
LDPKI+N+VSKEL + +VVFDE HNIDN C+++ S+ I+R+T+E A N++ LE +KE
Sbjct: 240 LDPKISNLVSKELQKDCIVVFDECHNIDNACIEAFSLNISRKTLELASNNLRKLEDMVKE 299
Query: 153 MKEADSAKLREEYARLVEGLRDAQSARETDV----VLANPVLPDEILQEVVPGNIRTAEH 208
K + +++L++EY RLVEGL + + +L++P+L ++L+E VPG+IR AEH
Sbjct: 300 EKVSSTSRLQDEYKRLVEGLVLGGENKGIQLSEKELLSHPLLAQDVLKEAVPGSIRKAEH 359
Query: 209 FVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRL 268
F+ FL+R I LK L+ ++V ++P + Y F L
Sbjct: 360 FINFLRRIIVCLKEELKTREVKIQTPLQLI-----------------YTFQGNYFL---- 398
Query: 269 RVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLA 328
+++ L+F +RL+SL+ TL+I + +F+ + ++ A
Sbjct: 399 -----------------------DQRSLKFAHDRLSSLMNTLQIAAVDEFNPINIVADFA 435
Query: 329 TLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPL 388
TL+S+Y KGF++I+EP+ + + +P+L F CLD+S+A KPVF+RF+ V++TSGT+SP+
Sbjct: 436 TLLSTYYKGFSVIIEPYP-QDNLIYDPLLQFYCLDASIATKPVFNRFRNVIMTSGTISPI 494
Query: 389 DMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
++YPK+L+FQP M +F++ L R + P++
Sbjct: 495 EIYPKMLDFQPKTMRAFNIILPRNAVQPLI 524
Score = 162 bits (411), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 136/228 (59%), Gaps = 32/228 (14%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRD---RHKAG-------------------------ENI 687
VSK+ D + VD +C LT+S VR+ + + G +N+
Sbjct: 120 VSKDDDRERVDSKCRQLTASWVREDALQQRGGSSVFLNNDTSSKIMTNVIPDIEDLHKNM 179
Query: 688 PVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYL 747
+C FYE F + + GVY++ L+ G++ +CPYFLAR ++ A I+VY+Y Y+
Sbjct: 180 KLCAFYETFWNRADQFTMPKGVYTLEDLRAFGKKHKMCPYFLARHFLLQANIIVYNYAYM 239
Query: 748 LDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE 807
LDPKI+N+VSKEL + +VVFDE HNIDN C+++ S+ I+R+T+E A N++ LE +KE
Sbjct: 240 LDPKISNLVSKELQKDCIVVFDECHNIDNACIEAFSLNISRKTLELASNNLRKLEDMVKE 299
Query: 808 MKEADSAKLREEYARLVEGLRDAQSARETDV----VLANPVLPDEILQ 851
K + +++L++EY RLVEGL + + +L++P+L ++L+
Sbjct: 300 EKVSSTSRLQDEYKRLVEGLVLGGENKGIQLSEKELLSHPLLAQDVLK 347
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 73/126 (57%), Gaps = 26/126 (20%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M ELKK LD++GH +LEMP+GTGKT LLSLI++Y+ A + KL+YC+RT+ E+EK +
Sbjct: 1 MKELKKTLDSEGHAILEMPTGTGKTVCLLSLILSYIKAKKPNF-KLIYCTRTIVEMEKTL 59
Query: 508 EELARLFDYYIK-------HNEEI-NMT-----------------GLVLSSRKNLCIHSE 542
EEL + + K H ++ NMT L LSSR+NLCIH E
Sbjct: 60 EELKFVLEQREKDFPSDQSHQQQFQNMTLEESKNQQNQDLNSPILALCLSSRRNLCIHPE 119
Query: 543 FETRDD 548
DD
Sbjct: 120 VSKDDD 125
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 56/76 (73%)
Query: 578 LYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNL 637
L + S F+ R++ IRNYG LL++++ +VPDG+VCFFTSY Y+E ++ W + GI+ +
Sbjct: 532 LQISSKFDERENQGNIRNYGNLLIELSSIVPDGIVCFFTSYKYMEHIIIKWDEMGILQKV 591
Query: 638 QKRKLLFIETQDALDS 653
++ KL++IET+D ++
Sbjct: 592 RENKLIYIETKDNFET 607
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 53/82 (64%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+ K DYG+MIFADKR++RSDK+ K P WI+ L N+S + A+Q + + ++M Q
Sbjct: 697 VLRSKYDYGLMIFADKRYSRSDKQDKFPIWIRNQLEARNQNISIDIAIQTANTFFKEMGQ 756
Query: 909 PFTREDMLGVALLSLDQLLEKE 930
FT + + + L+QL +++
Sbjct: 757 AFTMPESMLYGIEKLNQLNQQK 778
>gi|78190773|gb|ABB29708.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH [Aphrocallistes vastus]
Length = 413
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 144/308 (46%), Positives = 199/308 (64%), Gaps = 46/308 (14%)
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVCV+S+SV++ R T+ A+ N+QTL ++ +K+ D+ KLR+EY RLV+GLR+A+ A+E
Sbjct: 1 NVCVESMSVKLTRTTLAGALKNLQTLSSEIERIKQEDANKLRQEYLRLVQGLREARIAKE 60
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D + +PVLPD IL+E VPGNIR AEHF+ F+KRF+EY
Sbjct: 61 ADQYIGSPVLPDAILEEAVPGNIRKAEHFLNFMKRFVEY--------------------- 99
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
LK+R+R +V+ E+P FL S VCIERKPL+FC
Sbjct: 100 -----------------------LKSRMRSTRVISETPPLFLTHASKTVCIERKPLKFCY 136
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL SLL +I N+TDFS L+ + + ATLV++Y KGF +++EP++D PT NPV++
Sbjct: 137 ERLKSLLSATDIYNITDFSHLIXVANFATLVATYEKGFMMLIEPYTDLNPTAHNPVMHLS 196
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV-- 418
CLD+S+A K +F RFQ+V++TSGTLSPLDMYPK+L F PV+ S SM+L+RPC P+V
Sbjct: 197 CLDASVASKSIFQRFQSVILTSGTLSPLDMYPKLLAFNPVLTISLSMSLSRPCACPLVIS 256
Query: 419 RENYAMGL 426
R N M +
Sbjct: 257 RGNDQMAI 264
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 59/71 (83%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
F R+D +V+RNYG LL +++ +VPDG+VCFFTSY Y+ESVVA+W +QGI+ +QK KL+
Sbjct: 268 FGDREDANVVRNYGNLLSELSHIVPDGMVCFFTSYTYMESVVAAWCEQGILSKIQKNKLI 327
Query: 644 FIETQDALDSR 654
FIETQ++ ++R
Sbjct: 328 FIETQNSNETR 338
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 58/76 (76%)
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
NVCV+S+SV++ R T+ A+ N+QTL ++ +K+ D+ KLR+EY RLV+GLR+A+ A+E
Sbjct: 1 NVCVESMSVKLTRTTLAGALKNLQTLSSEIERIKQEDANKLRQEYLRLVQGLREARIAKE 60
Query: 836 TDVVLANPVLPDEILQ 851
D + +PVLPD IL+
Sbjct: 61 ADQYIGSPVLPDAILE 76
>gi|452822467|gb|EME29486.1| DNA excision repair protein ERCC-2 [Galdieria sulphuraria]
Length = 747
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 164/429 (38%), Positives = 241/429 (56%), Gaps = 61/429 (14%)
Query: 6 DGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGR---EAPLAPGVYSITKLKE 62
+G +VDGRC SLT+S +R++ K IP C++ + E + GVYS+ L+
Sbjct: 127 EGFLVDGRCRSLTASWIREKAKNDPTIPKCNYMMTLWCNQKQVDEMIIPCGVYSLQDLRR 186
Query: 63 MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPK----IANVVSKELARSSVVVFDEAHN 118
G + G CPYF +R+ + A ++VYSYHYLLDPK ++ +VS+EL + ++VVFDEAHN
Sbjct: 187 WGEQNGCCPYFYSRRLLAFANLIVYSYHYLLDPKYRVEVSQLVSRELPQDAIVVFDEAHN 246
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEG------- 171
IDNVC+++LSV +NR TI+ A L + K A L++EY L G
Sbjct: 247 IDNVCIEALSVWVNRNTIDDANNAAMQLAHRVVHAKGQSLAMLQQEYQNLTRGQTIHHGL 306
Query: 172 LRDAQSARETDVVLANPVLPD--EILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQV 229
S ++ +A P + D + L+E VP +IR AEHF+ +L+ I Y+K L +
Sbjct: 307 TSSTLSVNWSEWEMAQPSIHDVHQTLEETVPPSIRKAEHFIAYLQSLIAYIKNLLNRPEA 366
Query: 230 VQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKV 289
++ + FL+D S +E P
Sbjct: 367 LEMTHNQFLQDFS--------------------------------KECP----------- 383
Query: 290 CIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKA 349
+E K RF ++RL+SLLRTLEI + + F SL + + T+ S+Y+ GFAII+EPF K
Sbjct: 384 -VEVKSFRFTSDRLSSLLRTLEIGDWSRFRSLASVAEMITIASTYSSGFAIILEPFETKT 442
Query: 350 PTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTL 409
+ +PVL CLD+SLA+ PV +F+ V+ITSGTLSPLD YP++LNF+ I SF+M+L
Sbjct: 443 -HIWSPVLQLACLDASLAMMPVTRKFRNVIITSGTLSPLDFYPRMLNFRAAITASFNMSL 501
Query: 410 ARPCLLPMV 418
R C+LP++
Sbjct: 502 NRRCVLPLI 510
Score = 145 bits (367), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 119/212 (56%), Gaps = 17/212 (8%)
Query: 622 ESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRH 681
+ VV W+ + L RK L + Q V +G +VDGRC SLT+S +R++
Sbjct: 98 KEVVDGWF---LCIGLASRKHLCLNEQ-------VVSCGEGFLVDGRCRSLTASWIREKA 147
Query: 682 KAGENIPVCDFYEKFDAVGR---EAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
K IP C++ + E + GVYS+ L+ G + G CPYF +R+ + A
Sbjct: 148 KNDPTIPKCNYMMTLWCNQKQVDEMIIPCGVYSLQDLRRWGEQNGCCPYFYSRRLLAFAN 207
Query: 739 IVVYSYHYLLDPK----IANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKA 794
++VYSYHYLLDPK ++ +VS+EL + ++VVFDEAHNIDNVC+++LSV +NR TI+ A
Sbjct: 208 LIVYSYHYLLDPKYRVEVSQLVSRELPQDAIVVFDEAHNIDNVCIEALSVWVNRNTIDDA 267
Query: 795 VGNIQTLEGTLKEMKEADSAKLREEYARLVEG 826
L + K A L++EY L G
Sbjct: 268 NNAAMQLAHRVVHAKGQSLAMLQQEYQNLTRG 299
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 85/121 (70%), Gaps = 2/121 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M +D L V+FPY ++YPEQ +YM +LKKALDAKGH +LEMPSGTGKT +LLSL+ +Y+
Sbjct: 1 MKFQLDGLNVYFPYAHVYPEQLSYMNQLKKALDAKGHAVLEMPSGTGKTITLLSLLTSYL 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLV--LSSRKNLCIHS 541
V K++YC+RTV E+EKV+EE L+ + E ++ L L+SRK+LC++
Sbjct: 61 LQTQPSVRKIIYCTRTVEEMEKVMEEANILYHCLQQEKEVVDGWFLCIGLASRKHLCLNE 120
Query: 542 E 542
+
Sbjct: 121 Q 121
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
CV+P ++ + + L S F R ++ V ++YG++L++I+ +VPDG+V FF SY Y+E
Sbjct: 505 CVLP-LIIGMGENRVLLTSKFNQRGELQVPKSYGRILIEISKLVPDGIVGFFPSYEYMEL 563
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+ W + ++D LQ KLLFIET D +S
Sbjct: 564 ALDVWKENNVLDELQAMKLLFIETSDGAES 593
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 45/59 (76%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMA 907
+++ K+DYGIM+FAD+R+AR DK +KLP+WI ++L+++ + + A+ K++L +MA
Sbjct: 683 VIRNKSDYGIMVFADRRYARYDKLTKLPRWILQFLSEDQIYIDIDTALTKIKQFLLEMA 741
>gi|260941790|ref|XP_002615061.1| hypothetical protein CLUG_05076 [Clavispora lusitaniae ATCC 42720]
gi|238851484|gb|EEQ40948.1| hypothetical protein CLUG_05076 [Clavispora lusitaniae ATCC 42720]
Length = 439
Score = 285 bits (729), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 151/356 (42%), Positives = 212/356 (59%), Gaps = 55/356 (15%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDR-----------HKAGENIPVCDFYEKFDAVGREAP 49
VSKER G +VD +C LT+ ++ + + +C F+EK +
Sbjct: 120 VSKERKGAVVDEKCRRLTNGQLKQKLEQQNVSQDEMRNHSDQYGLCSFHEKLYDYDQHDL 179
Query: 50 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 109
+ GVYS L + ++ G CPYF R+ + I++YSYHYLLDPKIA VS+EL++ S
Sbjct: 180 IPSGVYSFEALLDYCKQAGTCPYFTVRRMLSFCNIIIYSYHYLLDPKIAERVSRELSKDS 239
Query: 110 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 169
+V+FDEAHNIDNVC++SLS+ + T+++A L + EMK DSAKL++EY +LV
Sbjct: 240 IVIFDEAHNIDNVCIESLSLYLTDDTLKRAGRGANKLAEAVDEMKAQDSAKLQDEYEKLV 299
Query: 170 EGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQV 229
EGLR + AR+ ++ +ANP LP ++L+E VPGNIR AEHF+ FLKRFIEYLKTR++V V
Sbjct: 300 EGLRQNEIARDEELFMANPALPQDLLEEAVPGNIRKAEHFLSFLKRFIEYLKTRMKVLHV 359
Query: 230 VQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKV 289
+ E+P +FL +HLK TF
Sbjct: 360 ISETPVSFL-----------------------QHLKE------------LTF-------- 376
Query: 290 CIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPF 345
IERKPLRFC+ERL+ L+RTL++ ++ D ++L I ATLVS+Y GF +I+EPF
Sbjct: 377 -IERKPLRFCSERLSLLVRTLDLADVDDLNALKDIATFATLVSTYDTGFQLILEPF 431
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 129/208 (62%), Gaps = 11/208 (5%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDR-----------HKAGENIPVCDFYEKFDAVGREA 703
+VSKER G +VD +C LT+ ++ + + +C F+EK +
Sbjct: 119 TVSKERKGAVVDEKCRRLTNGQLKQKLEQQNVSQDEMRNHSDQYGLCSFHEKLYDYDQHD 178
Query: 704 PLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARS 763
+ GVYS L + ++ G CPYF R+ + I++YSYHYLLDPKIA VS+EL++
Sbjct: 179 LIPSGVYSFEALLDYCKQAGTCPYFTVRRMLSFCNIIIYSYHYLLDPKIAERVSRELSKD 238
Query: 764 SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARL 823
S+V+FDEAHNIDNVC++SLS+ + T+++A L + EMK DSAKL++EY +L
Sbjct: 239 SIVIFDEAHNIDNVCIESLSLYLTDDTLKRAGRGANKLAEAVDEMKAQDSAKLQDEYEKL 298
Query: 824 VEGLRDAQSARETDVVLANPVLPDEILQ 851
VEGLR + AR+ ++ +ANP LP ++L+
Sbjct: 299 VEGLRQNEIARDEELFMANPALPQDLLE 326
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/120 (58%), Positives = 85/120 (70%), Gaps = 6/120 (5%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM ++KK LD G+C+LEMPSGTGKT SLLSL VAY
Sbjct: 1 MKFYIDDLPVLFPYPRIYPEQYAYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYY---IKHNEEINMTGLVLSSRKNLCIH 540
+P + K++YCSRT+ EIEK + EL L +Y + + EE GL L+SRKNLC+H
Sbjct: 61 MHYP-EHRKIVYCSRTMSEIEKALVELHSLMEYRASELGYVEEFR--GLGLTSRKNLCLH 117
>gi|258563374|ref|XP_002582432.1| DNA repair helicase RAD3 [Uncinocarpus reesii 1704]
gi|237907939|gb|EEP82340.1| DNA repair helicase RAD3 [Uncinocarpus reesii 1704]
Length = 474
Score = 283 bits (723), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 145/307 (47%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 112 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEG 171
VFDEAHNIDNVC+++LS+ I ++ KA LE + EMK +D+ KL+ EY +LVEG
Sbjct: 10 VFDEAHNIDNVCIEALSIDITEDSLRKASRGANNLERKIDEMKRSDADKLQREYEKLVEG 69
Query: 172 LRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQ 231
LR+A ARE D ++ANP LPD++L+E VP NIR AEHFV FLKRFI
Sbjct: 70 LREADQAREEDQLMANPALPDDLLKEAVPRNIRRAEHFVAFLKRFI-------------- 115
Query: 232 ESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCI 291
E+LKTR++
Sbjct: 116 ------------------------------EYLKTRMK---------------------- 123
Query: 292 ERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPT 351
RKPLRFCAERL SL+RTLE+ N+ D+ L + ATL ++Y KGF +I+EPF +A T
Sbjct: 124 -RKPLRFCAERLTSLVRTLELMNIEDYQPLQEVATFATLTATYEKGFLLILEPFESEAAT 182
Query: 352 VPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLAR 411
VPNP+L+F CLD+++AIKPVFDRF +V+ITSGTLSPL+MYPK+L F V+ S+SMTLAR
Sbjct: 183 VPNPILHFTCLDAAIAIKPVFDRFSSVIITSGTLSPLEMYPKMLEFTTVLQESYSMTLAR 242
Query: 412 PCLLPMV 418
LPM+
Sbjct: 243 RSFLPMI 249
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 62/85 (72%)
Query: 767 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEG 826
VFDEAHNIDNVC+++LS+ I ++ KA LE + EMK +D+ KL+ EY +LVEG
Sbjct: 10 VFDEAHNIDNVCIEALSIDITEDSLRKASRGANNLERKIDEMKRSDADKLQREYEKLVEG 69
Query: 827 LRDAQSARETDVVLANPVLPDEILQ 851
LR+A ARE D ++ANP LPD++L+
Sbjct: 70 LREADQAREEDQLMANPALPDDLLK 94
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 4/59 (6%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYG 597
I S F+ R+D V+RNYG LL++ + + PDG+V FF SYLY+ES+ SV ++G
Sbjct: 259 ISSSFQIRNDPGVVRNYGNLLLEFSRITPDGIVVFFPSYLYMESIIRN----SVSESFG 313
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 35/46 (76%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVV 625
+ S F+ R+D V+RNYG LL++ + + PDG+V FF SYLY+ES++
Sbjct: 259 ISSSFQIRNDPGVVRNYGNLLLEFSRITPDGIVVFFPSYLYMESII 304
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 871 KRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKE 930
KR++LPKWI + + ++ TNLST+ AV +K +LR MAQPF +D G++ SL LE+
Sbjct: 364 KRNQLPKWIAQNMLESETNLSTDMAVATAKNFLRTMAQPFKNKDQEGISTWSLAD-LERH 422
Query: 931 HARAEEEEVPR 941
A+ + E R
Sbjct: 423 VAKQKGEAAKR 433
>gi|209879600|ref|XP_002141240.1| DNA repair helicase family protein [Cryptosporidium muris RN66]
gi|209556846|gb|EEA06891.1| DNA repair helicase family protein [Cryptosporidium muris RN66]
Length = 835
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 163/483 (33%), Positives = 246/483 (50%), Gaps = 120/483 (24%)
Query: 10 VDGRCHSLTSSSVR--------DRHKAGENI------------------PVCDFYEKFDA 43
+D C S+T+ VR D K+G + +C +YE FD
Sbjct: 151 IDAMCRSMTAPWVRAKKSSTRLDNDKSGTQVIDQSSLQDIEDIIQGNCTDLCPYYEIFDK 210
Query: 44 VGREAPLAPGVYSITKLKEMGREL---------GLCPYFLARQAIIHAKIVVYSYHYLLD 94
+ + GVY+I +L+ G+E CPY+ ++ I AK+VV +Y Y LD
Sbjct: 211 IWSSDTIPIGVYTIDELRRFGKEWEHPTLKKNTPFCPYYSTKRLIQVAKVVVLNYQYTLD 270
Query: 95 PKIA-----------------NVVSKELARS---------------SVVVFDEAHNIDNV 122
PK+A N+ K+ S S+VVFDEAHNIDN+
Sbjct: 271 PKVAQASLLGGTVSQGFSHGSNINGKQAGSSYAAALDPELLGSKEPSIVVFDEAHNIDNI 330
Query: 123 CVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETD 182
C ++LSV INR+ ++ A N+++L+ + ++ E D +L+EEY RLV GL+ E D
Sbjct: 331 CTEALSVNINRQVLDGASRNLKSLKNEINKLTEIDEKRLQEEYNRLVRGLKSTGQI-EDD 389
Query: 183 VVLAN----PVLPDEI---LQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPA 235
+VL PVLP E+ +E++PG+IR AEHF+ +K+ YL+ +RV E P
Sbjct: 390 LVLEELQRFPVLPAEVEKLKKELIPGSIRKAEHFLLIMKKITLYLQNYIRVFTPKIEGPL 449
Query: 236 TFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKP 295
TFL HL+ S I+
Sbjct: 450 TFLN-----------------------HLE---------------------SSCMIDVNI 465
Query: 296 LRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNP 355
+RFC ERL SL+ TL+I ++ +S + ++ T++ +Y+KGF IIV+P+ + + +P
Sbjct: 466 IRFCDERLRSLMNTLQIIDMDQYSPIELVCTFCTILGTYSKGFVIIVDPYPE-VTGLYDP 524
Query: 356 VLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLL 415
++ CLDSS+A+KP+ DR+Q++V+TSGTLSPLD+YPK+L F PV+ S SMTL R C+
Sbjct: 525 IIQLSCLDSSIAMKPILDRYQSIVLTSGTLSPLDLYPKLLGFDPVVSESLSMTLDRTCIC 584
Query: 416 PMV 418
PM+
Sbjct: 585 PMI 587
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 124/266 (46%), Gaps = 72/266 (27%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVR--------DRHKAGENI------------------P 688
SV D +D C S+T+ VR D K+G +
Sbjct: 141 SVISNSDRDKIDAMCRSMTAPWVRAKKSSTRLDNDKSGTQVIDQSSLQDIEDIIQGNCTD 200
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGREL---------GLCPYFLARQAIIHAKI 739
+C +YE FD + + GVY+I +L+ G+E CPY+ ++ I AK+
Sbjct: 201 LCPYYEIFDKIWSSDTIPIGVYTIDELRRFGKEWEHPTLKKNTPFCPYYSTKRLIQVAKV 260
Query: 740 VVYSYHYLLDPKIA-----------------NVVSKELARS---------------SVVV 767
VV +Y Y LDPK+A N+ K+ S S+VV
Sbjct: 261 VVLNYQYTLDPKVAQASLLGGTVSQGFSHGSNINGKQAGSSYAAALDPELLGSKEPSIVV 320
Query: 768 FDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL 827
FDEAHNIDN+C ++LSV INR+ ++ A N+++L+ + ++ E D +L+EEY RLV GL
Sbjct: 321 FDEAHNIDNICTEALSVNINRQVLDGASRNLKSLKNEINKLTEIDEKRLQEEYNRLVRGL 380
Query: 828 RDAQSARETDVVLAN----PVLPDEI 849
+ E D+VL PVLP E+
Sbjct: 381 KSTGQI-EDDLVLEELQRFPVLPAEV 405
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 92/161 (57%), Gaps = 31/161 (19%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
I+++ VFFPY+Y+YPEQ YM LK+ LDA H +LEMP+GTGKT +L S I +Y A
Sbjct: 4 FFIEEVEVFFPYDYVYPEQLEYMKYLKQILDAHSHGVLEMPTGTGKTVTLFSFITSYQLA 63
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK----------HNEEINMT-------- 527
HP ++ +L+YC+RTV E+EK + EL + +Y IK IN++
Sbjct: 64 HP-NLGRLIYCTRTVAEMEKALLELKTVINYRIKELQKDKLALQETNNINISTSENQILN 122
Query: 528 ----GLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
+ +S+R+NLCI+S SVI N + +D C
Sbjct: 123 GSILAIGMSARRNLCINS--------SVISNSDRDKIDAMC 155
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 66/96 (68%), Gaps = 1/96 (1%)
Query: 558 LLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTS 617
+ +D C+ P +V + + L S +E+R+D + +NYG+L+++I+ VPDG+VCFF S
Sbjct: 576 MTLDRTCICP-MIVTRGSDQVPLSSRYESREDSIIQQNYGKLVLEISKKVPDGIVCFFPS 634
Query: 618 YLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
YLY+E V+ WY+ GI+ + + KL+F+ET+D + +
Sbjct: 635 YLYMEQVLGQWYESGILAQIMEHKLVFVETKDIVST 670
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 48/65 (73%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
I++ K DYG+MI AD+R+++ DKR KLP WI +YL +LST+ AV ++ +L+QM+Q
Sbjct: 760 IIRSKADYGLMILADQRYSKKDKREKLPPWILKYLKQEYCSLSTDMAVNIALSFLKQMSQ 819
Query: 909 PFTRE 913
P+ ++
Sbjct: 820 PYKKQ 824
>gi|67601888|ref|XP_666434.1| DNA repair protein-related [Cryptosporidium hominis TU502]
gi|54657424|gb|EAL36199.1| DNA repair protein-related [Cryptosporidium hominis]
Length = 841
Score = 266 bits (679), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 161/496 (32%), Positives = 256/496 (51%), Gaps = 124/496 (25%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKA----------GEN------------------- 31
VS D +D C S+T+ VR +H+ G+
Sbjct: 147 VSVHADRDKIDSMCRSMTAPWVRAKHQMEARERNALSEGDTNSSKMTEIADIEEMLESGC 206
Query: 32 IPVCDFYEKFDAVGREAPLAPGVYSITKLKE---------MGRELGLCPYFLARQAIIHA 82
+C +YE ++ V + G+Y+I + K+ +G+++ CPYF +++ I A
Sbjct: 207 TTLCPYYEAYERVWSSDLVPTGIYTIDEFKDFSKNWEHPILGKKIQFCPYFASKRLIQTA 266
Query: 83 KIVVYSYHYLLDPKIA-------NVVSKELARS--------------------------S 109
K+VV +Y Y+LDPK+A VS+ + S
Sbjct: 267 KVVVLNYQYILDPKVAQASLLGGGTVSQGFSHGANPNGLSLGSKFAASLLPEQEGTKEPS 326
Query: 110 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 169
VVVFDEAHNIDNVC+++LSV +NR+ + A N++TL+ ++ + D +L++EY RL+
Sbjct: 327 VVVFDEAHNIDNVCIEALSVNMNRQILSGAARNLRTLKSEIESLSSLDEQRLQDEYTRLI 386
Query: 170 EGLRDAQSARETDVVLAN----PVLPDE---ILQEVVPGNIRTAEHFVGFLKRFIEYLKT 222
+GLR++ ++ + VL + PVLP+E I + ++PG+IR AEHF+ +K+ I YL+
Sbjct: 387 QGLRNSGQVQD-EAVLEDLERFPVLPEEMEKIKKGLIPGSIRRAEHFITIMKKLILYLQE 445
Query: 223 RLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFL 282
+RV TR+ E P TF+
Sbjct: 446 YIRV-------------------------------------YSTRI-------EGPLTFV 461
Query: 283 KDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIV 342
K I + I+ L+FC ERL SLL TL I + +SSL ++ T++ SY+KGF +IV
Sbjct: 462 KHIEASCYIQSGLLKFCDERLRSLLNTLRIVDSDQYSSLELVCTFFTILGSYSKGFIVIV 521
Query: 343 EPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIM 402
+P+ + + +PV+ CLDSS+A++P+ R+Q++V+TSGTLSPLD+YPK+L F PV+
Sbjct: 522 DPYPE-VSGLYDPVIQLSCLDSSIAMRPILKRYQSIVLTSGTLSPLDLYPKLLGFIPVVS 580
Query: 403 HSFSMTLARPCLLPMV 418
S +MTL R C+ P++
Sbjct: 581 QSLTMTLDRTCICPLI 596
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 146/474 (30%), Positives = 231/474 (48%), Gaps = 113/474 (23%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
I++L VFFPY+ +YPEQ YM LK+ LDA H +LEMP+GTGKT +LLS I +Y
Sbjct: 4 FFIEELEVFFPYDNVYPEQLEYMKYLKQILDAHSHGVLEMPTGTGKTVTLLSFITSYQLV 63
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK--HNEEINMTGLVLSSRKNLCIHSEF 543
HP ++ KL+YC+RTV E+EK ++EL + DY K N++I + L + S N S
Sbjct: 64 HP-NMGKLIYCTRTVAEMEKALQELKTVVDYCKKEIENDKIKLE-LEIKSENNSSFASVS 121
Query: 544 ETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDI 603
E+R + I G C+ P SV RD I D
Sbjct: 122 ESRLSAASILGIGMTARRNMCINPR------------VSVHADRDKI-----------DS 158
Query: 604 ACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGK 663
C S+ A W + + +++R ER+
Sbjct: 159 MC----------------RSMTAPW----------------VRAKHQMEAR----ERNA- 181
Query: 664 IVDGRCHSLTSSSVRDRHKAGEN--IPVCDFYEKFDAVGREAPLAPGVYSITKLKE---- 717
+ +G +S + + D + E+ +C +YE ++ V + G+Y+I + K+
Sbjct: 182 LSEGDTNSSKMTEIADIEEMLESGCTTLCPYYEAYERVWSSDLVPTGIYTIDEFKDFSKN 241
Query: 718 -----MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIA-------NVVSKELARS-- 763
+G+++ CPYF +++ I AK+VV +Y Y+LDPK+A VS+ +
Sbjct: 242 WEHPILGKKIQFCPYFASKRLIQTAKVVVLNYQYILDPKVAQASLLGGGTVSQGFSHGAN 301
Query: 764 ------------------------SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 799
SVVVFDEAHNIDNVC+++LSV +NR+ + A N++
Sbjct: 302 PNGLSLGSKFAASLLPEQEGTKEPSVVVFDEAHNIDNVCIEALSVNMNRQILSGAARNLR 361
Query: 800 TLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLAN----PVLPDEI 849
TL+ ++ + D +L++EY RL++GLR++ ++ + VL + PVLP+E+
Sbjct: 362 TLKSEIESLSSLDEQRLQDEYTRLIQGLRNSGQVQD-EAVLEDLERFPVLPEEM 414
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Query: 549 ISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVP 608
I V+ + +D C+ P +V + L S FE+R D+S+ +NYG+L+++I VP
Sbjct: 576 IPVVSQSLTMTLDRTCICPL-IVTRGSDQTPLSSKFESRADVSIQQNYGKLILEITKKVP 634
Query: 609 DGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
DGVVCFF+SYLY+E +++ WY+ G++ + + KL+F+ET+D + +
Sbjct: 635 DGVVCFFSSYLYMEQMLSQWYESGLLAQIMEHKLVFVETKDIVST 679
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 45/62 (72%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+MIFAD R+ + DKR K+P WI ++L + LST+ AV +S +L+QM+Q
Sbjct: 769 VIRSKADYGLMIFADLRYNKKDKREKIPPWILKHLKPEYSTLSTDMAVSISSNFLKQMSQ 828
Query: 909 PF 910
P+
Sbjct: 829 PY 830
>gi|66362610|ref|XP_628271.1| RAD3'DEXDc+HELICc protein' [Cryptosporidium parvum Iowa II]
gi|46229591|gb|EAK90409.1| RAD3'DEXDc+HELICc protein' [Cryptosporidium parvum Iowa II]
Length = 841
Score = 265 bits (678), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 162/496 (32%), Positives = 256/496 (51%), Gaps = 124/496 (25%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHK--AGEN--------------------------- 31
VS D +D C S+T+ VR +H+ A E
Sbjct: 147 VSVHADRDKIDSMCRSMTAPWVRAKHQMEARERSALSEGDANSSKMTEIADIEEMLESGC 206
Query: 32 IPVCDFYEKFDAVGREAPLAPGVYSITKLKE---------MGRELGLCPYFLARQAIIHA 82
+C +YE ++ V + G+Y+I + K+ +G+++ CPYF +++ I A
Sbjct: 207 TTLCPYYEAYERVWSSDLVPTGIYTIDEFKDFSKNWEHPILGKKIQFCPYFASKRLIQTA 266
Query: 83 KIVVYSYHYLLDPKIA-------NVVSKELARS--------------------------S 109
K+VV +Y Y+LDPK+A VS+ + S
Sbjct: 267 KVVVLNYQYILDPKVAQASLLGGGTVSQGFSHGANPNGLSLGSKFAASLLPEQEGTKEPS 326
Query: 110 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 169
VVVFDEAHNIDNVC+++LSV +NR+ + A N++TL+ ++ + D +L++EY RL+
Sbjct: 327 VVVFDEAHNIDNVCIEALSVNMNRQILSGAARNLRTLKSEIESLSSLDEQRLQDEYTRLI 386
Query: 170 EGLRDAQSARETDVVLAN----PVLPDE---ILQEVVPGNIRTAEHFVGFLKRFIEYLKT 222
+GLR++ ++ + VL + PVLP+E I + ++PG+IR AEHF+ +K+ I YL+
Sbjct: 387 QGLRNSGQVQD-EAVLEDLERFPVLPEEMEKIKKGLIPGSIRRAEHFITIMKKLILYLQE 445
Query: 223 RLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFL 282
+RV TR+ E P TF+
Sbjct: 446 YIRV-------------------------------------YSTRI-------EGPLTFV 461
Query: 283 KDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIV 342
K I + I+ L+FC ERL SLL TL I + +SSL ++ T++ SY+KGF +IV
Sbjct: 462 KHIEASCYIQSGLLKFCDERLRSLLNTLRIVDSDQYSSLELVCTFFTILGSYSKGFIVIV 521
Query: 343 EPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIM 402
+P+ + + +PV+ CLDSS+A++P+ R+Q++V+TSGTLSPLD+YPK+L F PV+
Sbjct: 522 DPYPE-VSGLYDPVIQLSCLDSSIAMRPILKRYQSIVLTSGTLSPLDLYPKLLGFIPVVS 580
Query: 403 HSFSMTLARPCLLPMV 418
S +MTL R C+ P++
Sbjct: 581 QSLTMTLDRTCICPLI 596
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 143/472 (30%), Positives = 225/472 (47%), Gaps = 109/472 (23%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
I++L VFFPY+ +YPEQ YM LK+ LDA H +LEMP+GTGKT +LLS I +Y
Sbjct: 4 FFIEELEVFFPYDNVYPEQLEYMKYLKQILDAHSHGVLEMPTGTGKTVTLLSFITSYQLV 63
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK--HNEEINMTGLVLSSRKNLCIHSEF 543
HP ++ KL+YC+RTV E+EK ++EL + DY K N++I + + S N + S
Sbjct: 64 HP-NMGKLIYCTRTVAEMEKALQELKTVVDYCKKEIENDKIKLEQEI-KSENNSSLASVS 121
Query: 544 ETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDI 603
E+R + I G C+ P SV RD I D
Sbjct: 122 ESRFSAASILGIGMTARRNMCINPR------------VSVHADRDKI-----------DS 158
Query: 604 ACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGK 663
C S+ A W + + +++R S +G
Sbjct: 159 MC----------------RSMTAPW----------------VRAKHQMEARERSALSEG- 185
Query: 664 IVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKE------ 717
D +T + + +C +YE ++ V + G+Y+I + K+
Sbjct: 186 --DANSSKMTEIADIEEMLESGCTTLCPYYEAYERVWSSDLVPTGIYTIDEFKDFSKNWE 243
Query: 718 ---MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIA-------NVVSKELARS---- 763
+G+++ CPYF +++ I AK+VV +Y Y+LDPK+A VS+ +
Sbjct: 244 HPILGKKIQFCPYFASKRLIQTAKVVVLNYQYILDPKVAQASLLGGGTVSQGFSHGANPN 303
Query: 764 ----------------------SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 801
SVVVFDEAHNIDNVC+++LSV +NR+ + A N++TL
Sbjct: 304 GLSLGSKFAASLLPEQEGTKEPSVVVFDEAHNIDNVCIEALSVNMNRQILSGAARNLRTL 363
Query: 802 EGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLAN----PVLPDEI 849
+ ++ + D +L++EY RL++GLR++ ++ + VL + PVLP+E+
Sbjct: 364 KSEIESLSSLDEQRLQDEYTRLIQGLRNSGQVQD-EAVLEDLERFPVLPEEM 414
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Query: 549 ISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVP 608
I V+ + +D C+ P +V + L S FE+R D+S+ +NYG+L+++I VP
Sbjct: 576 IPVVSQSLTMTLDRTCICPL-IVTRGSDQTPLSSKFESRADVSIQQNYGKLILEITKKVP 634
Query: 609 DGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
DGVVCFF+SYLY+E +++ WY+ G++ + + KL+F+ET+D + +
Sbjct: 635 DGVVCFFSSYLYMEQMLSQWYESGLLAQIMEHKLVFVETKDIVST 679
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 45/62 (72%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+MIFAD R+ + DKR K+P WI ++L + LST+ AV +S +L+QM+Q
Sbjct: 769 VIRSKADYGLMIFADLRYNKKDKREKIPPWILKHLKPEYSTLSTDMAVSISSNFLKQMSQ 828
Query: 909 PF 910
P+
Sbjct: 829 PY 830
>gi|156083623|ref|XP_001609295.1| DNA excision repair helicase [Babesia bovis T2Bo]
gi|154796546|gb|EDO05727.1| DNA excision repair helicase [Babesia bovis]
Length = 822
Score = 265 bits (678), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 154/417 (36%), Positives = 219/417 (52%), Gaps = 81/417 (19%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLKEM---------GRELGLCPYFLARQAIIHAKI 84
+C YE + V + GVY++ LKE G +CPYF AR+A+ A +
Sbjct: 189 LCGHYEYLERVWNPTMIPSGVYTLEGLKEYCSNFRHPLSGVSTPICPYFAARRALDIANV 248
Query: 85 VVYSYHYLLDPKIANVVSKELARS-----------------------SVVVFDEAHNIDN 121
VV +Y YLLDPK++ L + VVVFDEAHNIDN
Sbjct: 249 VVLNYQYLLDPKVSEAAFSNLYSTLPSSEKKEKDAPQKPAENKAKLPIVVVFDEAHNIDN 308
Query: 122 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARET 181
VC++++SV IN T+++A N+ L G + +E D +L EEY RL E + D+ E
Sbjct: 309 VCIEAMSVEINDDTLDEAYANLDILAGHVARQREKDERQLLEEYRRLAERIVDSSIDIEG 368
Query: 182 DVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDI 241
+PVLPD+++Q+ +PGNIR AEHF+ FL+ + YLK L+VQ+ E P FL
Sbjct: 369 ---YMSPVLPDDVIQKAIPGNIRRAEHFISFLRTVVGYLKQYLKVQEPRSEGPLMFLH-- 423
Query: 242 SSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAE 301
R +Q + I L++
Sbjct: 424 ---------------------------RFEQ---------------ETGIAYSTLQYTYN 441
Query: 302 RLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCC 361
R+ SLL TL IT L D SS+ ++ TLV +YT GF +IVEP+ ++ PV+ F C
Sbjct: 442 RMKSLLNTLSITALGDLSSIQLVADFCTLVGTYTTGFIVIVEPYPQG--SLYEPVIQFSC 499
Query: 362 LDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
LD+S+A++PV + FQ+V++TSGT+SPL+MYPKILNF PV+ S M+L R CL P++
Sbjct: 500 LDASIAMQPVVENFQSVILTSGTISPLEMYPKILNFTPVLTQSLPMSLDRDCLCPLI 556
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 99/195 (50%), Gaps = 35/195 (17%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLKEM---------GRELGLCPYFLARQAIIHAKI 739
+C YE + V + GVY++ LKE G +CPYF AR+A+ A +
Sbjct: 189 LCGHYEYLERVWNPTMIPSGVYTLEGLKEYCSNFRHPLSGVSTPICPYFAARRALDIANV 248
Query: 740 VVYSYHYLLDPKIANVVSKELARS-----------------------SVVVFDEAHNIDN 776
VV +Y YLLDPK++ L + VVVFDEAHNIDN
Sbjct: 249 VVLNYQYLLDPKVSEAAFSNLYSTLPSSEKKEKDAPQKPAENKAKLPIVVVFDEAHNIDN 308
Query: 777 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARET 836
VC++++SV IN T+++A N+ L G + +E D +L EEY RL E + D+ E
Sbjct: 309 VCIEAMSVEINDDTLDEAYANLDILAGHVARQREKDERQLLEEYRRLAERIVDSSIDIEG 368
Query: 837 DVVLANPVLPDEILQ 851
+PVLPD+++Q
Sbjct: 369 ---YMSPVLPDDVIQ 380
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
+D + VFFPY IYPEQ AY+ LK LDA+GH +LEMP+GTGKT +L SLI +Y A
Sbjct: 4 FWLDGIEVFFPYPQIYPEQLAYLRSLKSTLDAQGHAVLEMPTGTGKTVALFSLITSYQLA 63
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDY 516
P ++ +L+YC+RT+PE+EK + EL + Y
Sbjct: 64 RP-EMGRLIYCTRTIPEMEKSLLELKEVIKY 93
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
Query: 560 VDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYL 619
+D C+ P +V + L + + +E R+D++V+RNYG LL+++ +PDGVVCFF SY
Sbjct: 547 LDRDCLCP-LIVAKGANQLQMSTRYELRNDVTVLRNYGTLLIELCKHIPDGVVCFFPSYA 605
Query: 620 YLESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
Y+E +V+ WY+ GII ++ + KL+F+ET+D + +
Sbjct: 606 YMELIVSHWYECGIIASIMEHKLIFMETKDVVTT 639
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
I++ K+D+G+M+FAD R++R+DKRSKLP WI + L +L+TE AV +K LR +AQ
Sbjct: 729 IIRNKSDFGLMVFADSRYSRADKRSKLPPWILKNLEPGNMSLTTESAVTAAKVLLRNIAQ 788
Query: 909 PFTREDMLGVALLSLDQLLEKEHAR 933
D + L DQ + + A+
Sbjct: 789 -----DYVSSRLTRFDQDMLNDEAK 808
>gi|342182871|emb|CCC92351.1| putative DNA excision repair protein, Transcription factor II H
complex, XPD subunit [Trypanosoma congolense IL3000]
Length = 811
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 148/421 (35%), Positives = 234/421 (55%), Gaps = 66/421 (15%)
Query: 10 VDGRCHSLTSS-SVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELG 68
VD C SLT+ V R C +++ + G + P PG YS+ LK +GR+
Sbjct: 130 VDAGCRSLTAPWQVNQR---------CVYFDNLENNGFDLP--PGAYSVGDLKRLGRKHR 178
Query: 69 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 128
+CPY+LAR+A+ A IVV+S+ Y++DP +A V + + +++VV DEAHN+D+VCV+ +S
Sbjct: 179 VCPYYLARKALKIADIVVHSFLYIVDPIVAEVTKEYMNENTIVVMDEAHNVDDVCVEVMS 238
Query: 129 VRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR----ETDVV 184
+ I + +A N++ L + MK + KL+EEY RLV GL AQ AR T
Sbjct: 239 LVITKEDAAQAKENVKRLGDAVDRMKATNRQKLQEEYDRLVNGLAMAQMARAAGSNTTAS 298
Query: 185 LANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSK 244
+ P +P +I +E +PG++R A HF+ F++R +++ +VV T++ D
Sbjct: 299 VHVPAIPQDIAEEAIPGSLRQANHFLAFMQRLVDF------THRVVCRISRTYVAD---- 348
Query: 245 PAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLA 304
P TFL + + I+ + LR+ ERL
Sbjct: 349 ---------------------------------PLTFLTKVKEECSIDVRHLRYLTERLK 375
Query: 305 SLLRTLEITNLTDFSSLVVITHL-ATLVSSYTK------GFAIIVEPFSDKAPTVPNPVL 357
L+ TL+ITN ++ ++ +I H+ TL + YT GF ++ E P++P+PV+
Sbjct: 376 VLMNTLQITNSHNYRNVSLIAHMFMTLSTHYTDDRYEKPGFVVVCEASDPTRPSIPDPVV 435
Query: 358 YFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM 417
C+D+SLA++ VF ++++V++TSGTLSPLD+YPK+L F PVI SF MTL+R C+ P+
Sbjct: 436 RLVCVDASLALREVFSKYRSVILTSGTLSPLDIYPKMLGFSPVIAKSFQMTLSRKCIAPV 495
Query: 418 V 418
V
Sbjct: 496 V 496
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 87/123 (70%), Gaps = 1/123 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L I+D+PV FPYEYIYPEQ YM ELK+ LD GH +LEMPSGTGKTT+LLSL++AY+
Sbjct: 1 MKLFIEDVPVLFPYEYIYPEQLEYMTELKRGLDQGGHMVLEMPSGTGKTTTLLSLLIAYV 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYY-IKHNEEINMTGLVLSSRKNLCIHSE 542
+ H + K++YC+RTV E++K V EL+++ + + + G+ L+++KNLC
Sbjct: 61 HHHADEKRKVVYCTRTVGEVDKTVSELSKILKLWDAEGTASRPLRGVCLTAKKNLCTEPS 120
Query: 543 FET 545
E+
Sbjct: 121 VES 123
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 111/192 (57%), Gaps = 16/192 (8%)
Query: 665 VDGRCHSLTSS-SVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELG 723
VD C SLT+ V R C +++ + G + P PG YS+ LK +GR+
Sbjct: 130 VDAGCRSLTAPWQVNQR---------CVYFDNLENNGFDLP--PGAYSVGDLKRLGRKHR 178
Query: 724 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 783
+CPY+LAR+A+ A IVV+S+ Y++DP +A V + + +++VV DEAHN+D+VCV+ +S
Sbjct: 179 VCPYYLARKALKIADIVVHSFLYIVDPIVAEVTKEYMNENTIVVMDEAHNVDDVCVEVMS 238
Query: 784 VRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR----ETDVV 839
+ I + +A N++ L + MK + KL+EEY RLV GL AQ AR T
Sbjct: 239 LVITKEDAAQAKENVKRLGDAVDRMKATNRQKLQEEYDRLVNGLAMAQMARAAGSNTTAS 298
Query: 840 LANPVLPDEILQ 851
+ P +P +I +
Sbjct: 299 VHVPAIPQDIAE 310
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+ KTDYG+M+ D+RFA +DKR KLP WIQ+ L +N TNLS + AV +++ + ++MAQ
Sbjct: 678 VLRNKTDYGMMLLVDRRFALNDKRKKLPIWIQQCLKEN-TNLSVDAAVAVARGFFKEMAQ 736
Query: 909 PFTREDMLGVALLSLDQLLEKEHARAEEEEVPR 941
P+ + LG L S+D L K V R
Sbjct: 737 PWEYKKDLGTTLFSVDTLARKGFLEPSRSSVTR 769
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 582 SVFETRDD----ISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNL 637
S F R D +V Y LL +A VPDG+VCFFT Y Y+ V+ WY G + L
Sbjct: 513 SSFAVRKDPEAQATVSAAYEDLLRGLAVTVPDGIVCFFTGYQYMSEVLLVWYRSGFLKEL 572
Query: 638 QKRKLLFIETQDALDSRSVSKERDGKIVD-GR 668
KL+F+ETQ +++ SV+ E + D GR
Sbjct: 573 AHHKLIFVETQ-SVEETSVALENYRRACDIGR 603
>gi|426243940|ref|XP_004015798.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit [Ovis aries]
Length = 759
Score = 263 bits (673), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 132/230 (57%), Positives = 168/230 (73%), Gaps = 17/230 (7%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V+ R GK VDG+CHSLT+S VR +++
Sbjct: 128 RKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQ 187
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FD GR+ PL G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 188 RDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDLKAVGRRQGWCPYFLARYSILHANVVVY 247
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
SYHYLLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++ N++TL+
Sbjct: 248 SYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQANLETLQ 307
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQG 852
T+ KE D +LREEY RLVEGLR+A +ARETD LANPVLPDE+L+G
Sbjct: 308 KTVLRYKETDEQRLREEYRRLVEGLREASAARETDAHLANPVLPDEVLKG 357
Score = 261 bits (668), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 129/245 (52%), Positives = 174/245 (71%), Gaps = 3/245 (1%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FD GR+ PL G+Y++ L
Sbjct: 161 VTPLRFGKDVDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDL 220
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 221 KAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 280
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC+DS+SV + RRT+++ N++TL+ T+ KE D +LREEY RLVEGLR+A +ARE
Sbjct: 281 NVCIDSMSVNLTRRTLDRCQANLETLQKTVLRYKETDEQRLREEYRRLVEGLREASAARE 340
Query: 181 TDVVLANPVLPDEILQE--VVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL 238
TD LANPVLPDE+L+ + P + ++ +R L T L + + SP T L
Sbjct: 341 TDAHLANPVLPDEVLKGPLIAPQPLGRSQPLRFCAERLRSLLHT-LEISDLTDFSPLTLL 399
Query: 239 KDISS 243
+ ++
Sbjct: 400 ANFAT 404
Score = 195 bits (496), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 86/125 (68%), Positives = 108/125 (86%)
Query: 294 KPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVP 353
+PLRFCAERL SLL TLEI++LTDFS L ++ + ATLVS+Y KGF II+EPF D+ PT+
Sbjct: 369 QPLRFCAERLRSLLHTLEISDLTDFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIA 428
Query: 354 NPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPC 413
NP+L+F C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR C
Sbjct: 429 NPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVC 488
Query: 414 LLPMV 418
L PM+
Sbjct: 489 LCPMI 493
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/133 (63%), Positives = 104/133 (78%), Gaps = 4/133 (3%)
Query: 412 PCLLPMVREN-YAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTG 470
PC M +EN L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTG
Sbjct: 30 PC--TMEQENKLGTRLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTG 87
Query: 471 KTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGL 529
KT SLL+LI+AY A+PL+VTKL+YCSRTVPEIEKV+EEL +L +Y K E++ GL
Sbjct: 88 KTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGL 147
Query: 530 VLSSRKNLCIHSE 542
LSSRKNLCIH E
Sbjct: 148 ALSSRKNLCIHPE 160
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 503 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 562
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 563 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 615
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 70/99 (70%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 634 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 692
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 693 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 731
>gi|340506361|gb|EGR32513.1| tfiih basal transcription factor complex helicase subunit, putative
[Ichthyophthirius multifiliis]
Length = 809
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 142/418 (33%), Positives = 234/418 (55%), Gaps = 46/418 (11%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V ++ + +D C LT+ VR R + GE +C F+E F+ E G+Y+I L
Sbjct: 124 VQNQQKKEKIDDECLKLTAKWVRFRGEKGEQ-KLCTFFENFEEKKEEIEFKEGIYNIDDL 182
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE+G++ +CPYFLAR+ + + IVVY+Y YLL P++ ++++K L + +VVFDEAHNID
Sbjct: 183 KEIGKQKNICPYFLARKLVNDSNIVVYNYMYLLSPQMKDIINKSLQKDCIVVFDEAHNID 242
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
N+C+D +V IN+R ++ A N++ LE + MK L EY +L+ GL+ ++
Sbjct: 243 NICLDVFTVNINKRLLDSAYKNVEQLELKIDNMKNQSQQSLENEYKQLLNGLKKKILLQK 302
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ L + +E+ ++ +P IR A+ FV FLK+ + +LK +L+ + + + P FL D
Sbjct: 303 NNFYLLIKGVFEELAKQSIPLQIRLAKPFVLFLKKILMFLKNKLKEKNCINQDPPQFLSD 362
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+ + H I++ L+F
Sbjct: 363 M-----------------QIQNH---------------------------IDQTSLKFAE 378
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
ERL+ L +LEIT+ ++ ++ I +TL++ +GF II +P S ++ +P+L F
Sbjct: 379 ERLSQLFMSLEITDNDEYVAITTIAQFSTLLAMNQRGFKIIFQP-SPLDGSLSDPLLTFT 437
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSSLAI+ VF + +V++TSGT+SPLD+YPKILNF P ++ S + L+R + P++
Sbjct: 438 CLDSSLAIQNVFKEYASVILTSGTMSPLDIYPKILNFNPFMLKSIDIELSRNSINPII 495
Score = 142 bits (359), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 120/198 (60%), Gaps = 10/198 (5%)
Query: 638 QKRKLLFIETQDALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVC 690
+KR+ F+ T AL +RS V ++ + +D C LT+ VR R + GE +C
Sbjct: 101 EKREFKFLCT--ALSARSNLCINPLVQNQQKKEKIDDECLKLTAKWVRFRGEKGEQ-KLC 157
Query: 691 DFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDP 750
F+E F+ E G+Y+I LKE+G++ +CPYFLAR+ + + IVVY+Y YLL P
Sbjct: 158 TFFENFEEKKEEIEFKEGIYNIDDLKEIGKQKNICPYFLARKLVNDSNIVVYNYMYLLSP 217
Query: 751 KIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKE 810
++ ++++K L + +VVFDEAHNIDN+C+D +V IN+R ++ A N++ LE + MK
Sbjct: 218 QMKDIINKSLQKDCIVVFDEAHNIDNICLDVFTVNINKRLLDSAYKNVEQLELKIDNMKN 277
Query: 811 ADSAKLREEYARLVEGLR 828
L EY +L+ GL+
Sbjct: 278 QSQQSLENEYKQLLNGLK 295
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 78/121 (64%), Gaps = 4/121 (3%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M I+DLPV+FPY+ +Y EQ YM +LK LD +GH ++EMP+GTGKT LLSLI +Y+
Sbjct: 1 MKFYINDLPVYFPYQSLYKEQLEYMKDLKLILDNQGHGIIEMPTGTGKTVCLLSLISSYL 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFD----YYIKHNEEINMTGLVLSSRKNLCI 539
+ KLLYC+RTV E+EK +EEL + + Y ++ E LS+R NLCI
Sbjct: 61 LQNQGKFKKLLYCTRTVVEMEKTIEELKFVLENTKKYILEEKREFKFLCTALSARSNLCI 120
Query: 540 H 540
+
Sbjct: 121 N 121
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 50/71 (70%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S FE R +++V R++G LL+DI+ + PDG+V FF SY Y+E ++ W GI+D L+K
Sbjct: 505 LSSEFEARQNMTVTRSFGALLIDISKICPDGIVAFFPSYRYMEQIIFEWDQDGILDELRK 564
Query: 640 RKLLFIETQDA 650
KL++ E++D
Sbjct: 565 YKLVYFESKDV 575
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++GK DYG+MI A+KRFARS + KLP+WI++ + D ++S+E ++ + ++M Q
Sbjct: 668 VMRGKNDYGLMIMAEKRFARSLVKKKLPEWIKKQIKDYNVDISSEVVSAIAVNFFKEMGQ 727
Query: 909 PFTREDMLGVALLSLDQLLE 928
F D + + QLLE
Sbjct: 728 EFIMNDK---SFFNQQQLLE 744
>gi|312098951|ref|XP_003149208.1| TFIIH basal transcription factor complex helicase subunit [Loa loa]
Length = 347
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 126/242 (52%), Positives = 170/242 (70%), Gaps = 1/242 (0%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS R G +VDG C LT+S VR + K ++P C F+EK D + GVY++ L
Sbjct: 97 VSSLRQGSLVDGACQKLTASFVRAKRKLRPDLPCCTFFEKLDE-QEDFNHLDGVYNLQNL 155
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+++G++ G+CPYFL+R + A IVVYSYHY+LDPKIA +VSK +R S VVFDEAHNID
Sbjct: 156 RKLGQQNGICPYFLSRNVVDRAHIVVYSYHYILDPKIAELVSKNFSRHSCVVFDEAHNID 215
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
NVC++S+SV + + T+EKA + LE ++ ++E +S +LR EY RLVEGL+ + R
Sbjct: 216 NVCIESMSVSLTKTTVEKATQKLGILEEHVQRLREENSEQLRVEYDRLVEGLKRVEEERT 275
Query: 181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
D VLANPVLPD IL+E VPG IR A HF+ FL+RF EYLK R+R + V+ E+PA FL+D
Sbjct: 276 NDQVLANPVLPDMILKEAVPGTIRNALHFISFLRRFNEYLKHRMRTKTVLIENPAAFLRD 335
Query: 241 IS 242
I+
Sbjct: 336 IN 337
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/199 (50%), Positives = 137/199 (68%), Gaps = 1/199 (0%)
Query: 653 SRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSI 712
+ SVS R G +VDG C LT+S VR + K ++P C F+EK D + GVY++
Sbjct: 94 NESVSSLRQGSLVDGACQKLTASFVRAKRKLRPDLPCCTFFEKLDE-QEDFNHLDGVYNL 152
Query: 713 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAH 772
L+++G++ G+CPYFL+R + A IVVYSYHY+LDPKIA +VSK +R S VVFDEAH
Sbjct: 153 QNLRKLGQQNGICPYFLSRNVVDRAHIVVYSYHYILDPKIAELVSKNFSRHSCVVFDEAH 212
Query: 773 NIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS 832
NIDNVC++S+SV + + T+EKA + LE ++ ++E +S +LR EY RLVEGL+ +
Sbjct: 213 NIDNVCIESMSVSLTKTTVEKATQKLGILEEHVQRLREENSEQLRVEYDRLVEGLKRVEE 272
Query: 833 ARETDVVLANPVLPDEILQ 851
R D VLANPVLPD IL+
Sbjct: 273 ERTNDQVLANPVLPDMILK 291
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 97/166 (58%), Gaps = 22/166 (13%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M ELKK LDA+GHCLLEMPSGTGKT SLLSL+VAYM P + KL+YCSRT+PEIEK V
Sbjct: 1 MGELKKTLDAQGHCLLEMPSGTGKTVSLLSLVVAYMLRFPDHLDKLVYCSRTIPEIEKCV 60
Query: 508 EELARLFDYYIK-HNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC-- 564
EEL LF YY + + ++ + LS+RKNLCI+ + +S +R LVD AC
Sbjct: 61 EELRNLFKYYEQCDGKPPSLFAVALSARKNLCIN------ESVSSLRQGS--LVDGACQK 112
Query: 565 -----------VVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQL 599
+ PD C F L + F D + ++N +L
Sbjct: 113 LTASFVRAKRKLRPDLPCCTFFEKLDEQEDFNHLDGVYNLQNLRKL 158
>gi|336377405|gb|EGO18567.1| hypothetical protein SERLADRAFT_443905 [Serpula lacrymans var.
lacrymans S7.9]
Length = 239
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 132/278 (47%), Positives = 181/278 (65%), Gaps = 45/278 (16%)
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
+V+YS+HYLLDPK+A VSKEL++ ++VVFDEAHNIDNVC++SLS+ + R ++ A ++
Sbjct: 6 VVIYSFHYLLDPKVAEQVSKELSKDAIVVFDEAHNIDNVCIESLSIDLTRPMLDSAARSV 65
Query: 144 QTLEGTLKEMKEADSAKLREEYARLVEGLRD-AQSARETDVVLANPVLPDEILQEVVPGN 202
L ++E+K D+AKL++EYA+LVEGL + A A + D ++NPVLPD++L E +PGN
Sbjct: 66 TKLGEKIEEIKTTDAAKLQDEYAKLVEGLEEPASEAADEDNFMSNPVLPDDLLNEAIPGN 125
Query: 203 IRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEE 262
IR AEHFV FLKRF+EYLKTR+RV VV E+P +FL+
Sbjct: 126 IRKAEHFVAFLKRFVEYLKTRMRVLHVVAETPLSFLQH---------------------- 163
Query: 263 HLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLV 322
LKDI+ IER+PLRFCAERL S++RTLE+ L ++SSL
Sbjct: 164 -------------------LKDIT---YIERRPLRFCAERLQSMIRTLELNRLDEYSSLQ 201
Query: 323 VITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
+ ATLV++Y KGF +I+EPF TVPNP+ +F
Sbjct: 202 KVASFATLVATYEKGFLLILEPFETDNATVPNPIFHFT 239
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 88/114 (77%), Gaps = 1/114 (0%)
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
+V+YS+HYLLDPK+A VSKEL++ ++VVFDEAHNIDNVC++SLS+ + R ++ A ++
Sbjct: 6 VVIYSFHYLLDPKVAEQVSKELSKDAIVVFDEAHNIDNVCIESLSIDLTRPMLDSAARSV 65
Query: 799 QTLEGTLKEMKEADSAKLREEYARLVEGLRD-AQSARETDVVLANPVLPDEILQ 851
L ++E+K D+AKL++EYA+LVEGL + A A + D ++NPVLPD++L
Sbjct: 66 TKLGEKIEEIKTTDAAKLQDEYAKLVEGLEEPASEAADEDNFMSNPVLPDDLLN 119
>gi|71032081|ref|XP_765682.1| DNA repair protein Rad3 [Theileria parva strain Muguga]
gi|68352639|gb|EAN33399.1| DNA repair protein rad3, putative [Theileria parva]
Length = 894
Score = 259 bits (662), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 152/414 (36%), Positives = 222/414 (53%), Gaps = 58/414 (14%)
Query: 31 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKE---------MGRELGLCPYFLARQAIIH 81
++ +C +YE + + + GVY++ LKE GR +CPYF AR+AI +
Sbjct: 249 SMGLCGYYETMERIWNPTFIPSGVYTLEGLKEYCLKYKDSRTGRASPICPYFAARRAIDN 308
Query: 82 AKIVVYSYHYLLDPKIANVVSKELARSS-----------------VVVFDEAHNIDNVCV 124
A IVV +Y YL+DPK+++ V L + VVVFDEAHNIDNVC+
Sbjct: 309 ANIVVLNYQYLIDPKVSDAVFYHLCTENYLKEKREDKDSKPKLPIVVVFDEAHNIDNVCI 368
Query: 125 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVV 184
++LSV ++ T++ A ++ LE ++E++ D L EEY RLVE E
Sbjct: 369 EALSVELSTETLDNAYSDLSRLEDNVRELRLRDQELLLEEYRRLVETTDFGSIDIEG--- 425
Query: 185 LANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSK 244
NPVL +I+ +PG+IR AEHF+ FLK I YLK ++V++ E P FL
Sbjct: 426 YMNPVLRQDIVDRAIPGSIRKAEHFISFLKVVIGYLKKYIKVKEAKSEGPLMFL------ 479
Query: 245 PAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLA 304
Y F ++ K + + E D+ + R+
Sbjct: 480 -----------YRFESQCKFKHLHNLHTIKFEHETGINSDV----------MEHTYNRMK 518
Query: 305 SLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDS 364
SLL TL++T + D +SL ++ TLV +Y GF +IV+PF T +P+L F CLD+
Sbjct: 519 SLLNTLKMTAVGDLTSLHLVVDFCTLVGTYYNGFIVIVDPFP--KATSYDPLLQFSCLDA 576
Query: 365 SLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
S+A+K V D FQ+V++TSGT+SPL+ YPKILNF PV+M S M+L R CL P++
Sbjct: 577 SIAMKSVIDNFQSVILTSGTISPLEFYPKILNFTPVLMQSLPMSLDRDCLCPII 630
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 26/166 (15%)
Query: 686 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKE---------MGRELGLCPYFLARQAIIH 736
++ +C +YE + + + GVY++ LKE GR +CPYF AR+AI +
Sbjct: 249 SMGLCGYYETMERIWNPTFIPSGVYTLEGLKEYCLKYKDSRTGRASPICPYFAARRAIDN 308
Query: 737 AKIVVYSYHYLLDPKIANVVSKELARSS-----------------VVVFDEAHNIDNVCV 779
A IVV +Y YL+DPK+++ V L + VVVFDEAHNIDNVC+
Sbjct: 309 ANIVVLNYQYLIDPKVSDAVFYHLCTENYLKEKREDKDSKPKLPIVVVFDEAHNIDNVCI 368
Query: 780 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVE 825
++LSV ++ T++ A ++ LE ++E++ D L EEY RLVE
Sbjct: 369 EALSVELSTETLDNAYSDLSRLEDNVRELRLRDQELLLEEYRRLVE 414
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 70/101 (69%), Gaps = 4/101 (3%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
ID + VFFPY IYPEQ AYM LK ALD+KGH +LEMP+GTGKT +L S + +Y A
Sbjct: 4 FWIDGIEVFFPYPKIYPEQIAYMKSLKTALDSKGHAVLEMPTGTGKTVALFSFVSSYQLA 63
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINM 526
P ++ KL+YC+RT+ E+EK + EL+ + Y N ++N+
Sbjct: 64 RP-ELGKLVYCTRTIHEMEKALLELSEVISY---RNSQLNI 100
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 67/94 (71%), Gaps = 1/94 (1%)
Query: 560 VDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYL 619
+D C+ P +V + +++ + F+ R DI+V+RNYG L++D+ +PDGVVCFF SY
Sbjct: 621 LDRDCLCPI-IVSKGANQVHMSTKFDLRTDITVLRNYGSLVIDLCKHIPDGVVCFFPSYA 679
Query: 620 YLESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
Y+E +++ WY+ GI+ ++ + KL+F+ET+D++ +
Sbjct: 680 YMELILSHWYETGILASIMEHKLVFMETKDSVTT 713
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K D+G+M+FAD R+ R DK+SKLP WI + + + L+TE AV ++K + R M+Q
Sbjct: 803 VIRNKADFGLMVFADARYTRIDKKSKLPPWILKNMDPSNLFLTTETAVSVAKAFFRNMSQ 862
Query: 909 PF--TREDMLGVALLSLDQ 925
+ ++ +G +L+ +Q
Sbjct: 863 EYVPSKHTRMGQEILNDEQ 881
>gi|47221017|emb|CAG12711.1| unnamed protein product [Tetraodon nigroviridis]
Length = 759
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 127/241 (52%), Positives = 160/241 (66%), Gaps = 44/241 (18%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYE--------------------- 694
VS R GK VDG+CHSLT+S +R + + N+P C F+E
Sbjct: 120 VSALRFGKEVDGKCHSLTASYIRAQRHSDSNVPACRFFEVRPFLVSKTLTLEKCSQTVQT 179
Query: 695 -----------------------KFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLAR 731
FDAVGR+ PL G+Y++ LK+ GR G CPY+LAR
Sbjct: 180 EILLEKKGPNCSNLPPRGALCLQDFDAVGRQVPLPAGIYNLDDLKDFGRRKGWCPYYLAR 239
Query: 732 QAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTI 791
+I+HA IVVYSYHYLLDPKIA++VSKELA+ SVVVFDEAHNIDNVC+DS+SV I RRT+
Sbjct: 240 YSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNIDNVCIDSMSVNITRRTL 299
Query: 792 EKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
++ GN+ TL+ T+ ++KE D+AKL+EEY RLVEGL++A ARETDV L+NPVLPDEILQ
Sbjct: 300 DRCQGNVDTLQRTIHKIKETDAAKLKEEYRRLVEGLKEANIARETDVYLSNPVLPDEILQ 359
Query: 852 G 852
G
Sbjct: 360 G 360
Score = 252 bits (643), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 126/240 (52%), Positives = 159/240 (66%), Gaps = 44/240 (18%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYE--------------------- 39
VS R GK VDG+CHSLT+S +R + + N+P C F+E
Sbjct: 120 VSALRFGKEVDGKCHSLTASYIRAQRHSDSNVPACRFFEVRPFLVSKTLTLEKCSQTVQT 179
Query: 40 -----------------------KFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLAR 76
FDAVGR+ PL G+Y++ LK+ GR G CPY+LAR
Sbjct: 180 EILLEKKGPNCSNLPPRGALCLQDFDAVGRQVPLPAGIYNLDDLKDFGRRKGWCPYYLAR 239
Query: 77 QAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTI 136
+I+HA IVVYSYHYLLDPKIA++VSKELA+ SVVVFDEAHNIDNVC+DS+SV I RRT+
Sbjct: 240 YSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNIDNVCIDSMSVNITRRTL 299
Query: 137 EKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 196
++ GN+ TL+ T+ ++KE D+AKL+EEY RLVEGL++A ARETDV L+NPVLPDEILQ
Sbjct: 300 DRCQGNVDTLQRTIHKIKETDAAKLKEEYRRLVEGLKEANIARETDVYLSNPVLPDEILQ 359
Score = 175 bits (444), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 86/118 (72%), Positives = 96/118 (81%), Gaps = 1/118 (0%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
L ID L V+FPY+YIYPEQY+YM+ELK+ LDAKGH +LEMPSGTGKT SLLSLIVAY A
Sbjct: 2 LNIDGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQKA 61
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
PL+VTKL+YCSRTVPEIEKVVEEL +L +YY K E N L LSSRKNLCIH E
Sbjct: 62 FPLEVTKLIYCSRTVPEIEKVVEELRKLLEYYTKQTGENNNFLALALSSRKNLCIHPE 119
Score = 122 bits (306), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 83/115 (72%), Gaps = 6/115 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+MIFADKR+AR DKR KL
Sbjct: 634 ARL-EYLRDHFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMIFADKRYARMDKRGKL 692
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKE 930
P+WIQE+++D NL+ +EAVQLSK +LRQMAQPF +ED LG++LL+L+QL +E
Sbjct: 693 PRWIQEHISDGSLNLTLDEAVQLSKHFLRQMAQPFRQEDQLGLSLLTLEQLESEE 747
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 76/116 (65%), Gaps = 27/116 (23%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQ-------- 631
L S FETR+D +VIRNYG LL++++ +VPDG+V FFTSY+Y+E++VASWY+Q
Sbjct: 467 LSSKFETREDFAVIRNYGNLLLEMSSIVPDGIVAFFTSYVYMENIVASWYEQVSVHRRIS 526
Query: 632 -----------------GIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCH 670
GI++N+QK KL+FIET DA ++ S++ E+ ++ D RCH
Sbjct: 527 VCNTACTQIKAYFVFFKGILENIQKNKLIFIETPDAAET-SMALEKYQEVRD-RCH 580
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 384 TLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
TLSPLD+YPKIL+F+PV M SF+MTLAR CL P++
Sbjct: 423 TLSPLDIYPKILDFRPVTMASFTMTLARTCLCPLI 457
>gi|326429202|gb|EGD74772.1| TFIIH basal transcription factor complex helicase XPD subunit
[Salpingoeca sp. ATCC 50818]
Length = 523
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 127/248 (51%), Positives = 163/248 (65%), Gaps = 44/248 (17%)
Query: 171 GLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVV 230
GL+ + TD V+ANPVLP +++E VPGNIR AEHFV FLKRF+EY
Sbjct: 9 GLQTTRELNATDAVMANPVLPSHVVEEAVPGNIRKAEHFVSFLKRFVEY----------- 57
Query: 231 QESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVC 290
LK RL V VV E PA FL +S
Sbjct: 58 ---------------------------------LKKRLDVNHVVNEPPAVFLDQVSIDAA 84
Query: 291 IERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAP 350
I+RKPLRF +ERL+SLL+TLE+T+ DFSSL+ + ATLV++YT GF++I+EPF D+AP
Sbjct: 85 IDRKPLRFASERLSSLLQTLELTDYDDFSSLMRVATFATLVATYTDGFSLIIEPFDDRAP 144
Query: 351 TVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLA 410
T+ +PVL+F C+D+SLAI+PVF+RFQ+VVITSGTLSPL+MYPKILNF+PV + +F MTL+
Sbjct: 145 TIRDPVLHFSCMDASLAIRPVFERFQSVVITSGTLSPLEMYPKILNFRPVTVCTFDMTLS 204
Query: 411 RPCLLPMV 418
R LLPM+
Sbjct: 205 RTSLLPMI 212
Score = 102 bits (254), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 62/74 (83%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S +E+R+D SV RNYG LL+D+A VVPDG+VCFF SY YLES+V +W+DQGI+D +++
Sbjct: 222 ISSRYESREDNSVKRNYGHLLLDMARVVPDGIVCFFVSYEYLESMVTTWHDQGIMDKIKQ 281
Query: 640 RKLLFIETQDALDS 653
+KL+F ETQD +++
Sbjct: 282 KKLVFAETQDVVET 295
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 63/77 (81%), Gaps = 2/77 (2%)
Query: 850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQP 909
++GK+DYGIM FAD R+A DK+ KLPKWIQ+Y+T TNLST++AV+L+KR+LR+MAQP
Sbjct: 386 IRGKSDYGIMCFADSRYASEDKKGKLPKWIQKYITPGHTNLSTDDAVKLAKRFLREMAQP 445
Query: 910 FTREDMLGVALLSLDQL 926
+ E G++LLSL Q+
Sbjct: 446 Y--ESKPGLSLLSLQQV 460
>gi|72393255|ref|XP_847428.1| TFIIH basal transcription factor complex helicase subunit
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|62175150|gb|AAX69298.1| TFIIH basal transcription factor complex helicase subunit, putative
[Trypanosoma brucei]
gi|70803458|gb|AAZ13362.1| TFIIH basal transcription factor complex helicase subunit, putative
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
Length = 819
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 142/420 (33%), Positives = 232/420 (55%), Gaps = 64/420 (15%)
Query: 10 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGL 69
VD C SLT+ D+ C +++ + G + L PG YS++ LK +G E +
Sbjct: 146 VDAGCRSLTAPWQTDQR--------CVYFDTLENQGFD--LRPGAYSLSDLKRLGEENHV 195
Query: 70 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 129
CPY+LAR+A+ A IV++S+ Y++DP +A V + + +++VV DEAHN+D+VC++++S+
Sbjct: 196 CPYYLARKALKVADIVIHSFLYIVDPIVAEVTKEYMDENTIVVMDEAHNVDDVCIEAMSL 255
Query: 130 RINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPV 189
+ + +A N++ L + MK + KL+EEY RLV GL A+ AR + V
Sbjct: 256 IVTKDDAFQAKDNVKKLNEAVDRMKATNRQKLQEEYDRLVNGLAMAELARSGESTAGVSV 315
Query: 190 ----LPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKP 245
+P +I +E +PG++R A HF+ F++R +++ +VV T++ D
Sbjct: 316 QALNIPQDIAEEAIPGSLRQANHFLAFMQRLVDF------THRVVCRISRTYVAD----- 364
Query: 246 APSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLAS 305
P TFL + + ++ + LR+ ERL
Sbjct: 365 --------------------------------PLTFLTKVKEECSVDVRHLRYLTERLKV 392
Query: 306 LLRTLEITNLTDFSSLVVITHL-ATLVSSYTK------GFAIIVEPFSDKAPTVPNPVLY 358
LL TL+IT+ F ++ +I + TL + YT GF ++ E PT+P+PV+
Sbjct: 393 LLNTLQITSAHSFHNVSLIAQMFMTLSTHYTDDRYEKPGFVVVCEASDPTRPTIPDPVIR 452
Query: 359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLA++ VF ++++V++TSGTLSPLD+YPK+L F PVI SF MTL+R C+ P+V
Sbjct: 453 LVCVDASLALREVFAKYRSVILTSGTLSPLDIYPKMLGFSPVIAKSFQMTLSRKCIAPVV 512
Score = 136 bits (342), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 91/133 (68%), Gaps = 8/133 (6%)
Query: 423 AMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
M L I+D+PV FPYEYIYPEQ YM ELKK LD GH +LEMPSGTGKTT+LLSL++AY
Sbjct: 16 GMKLFIEDVPVLFPYEYIYPEQLEYMTELKKGLDQGGHMVLEMPSGTGKTTTLLSLLIAY 75
Query: 483 MNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN---MTGLVLSSRKNLCI 539
++ H + K++YC+RTV E++K EL ++ + EE+ + G+ L+++KNLCI
Sbjct: 76 LHHHADEKRKVVYCTRTVGEVDKTASELRKILGLW--ETEEVGSRPLRGVCLTAKKNLCI 133
Query: 540 HSEFETR---DDI 549
+R DD+
Sbjct: 134 EPSVVSRRHLDDV 146
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 107/180 (59%), Gaps = 10/180 (5%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV R VD C SLT+ D+ C +++ + G + L PG YS++
Sbjct: 136 SVVSRRHLDDVDAGCRSLTAPWQTDQR--------CVYFDTLENQGFD--LRPGAYSLSD 185
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
LK +G E +CPY+LAR+A+ A IV++S+ Y++DP +A V + + +++VV DEAHN+
Sbjct: 186 LKRLGEENHVCPYYLARKALKVADIVIHSFLYIVDPIVAEVTKEYMDENTIVVMDEAHNV 245
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
D+VC++++S+ + + +A N++ L + MK + KL+EEY RLV GL A+ AR
Sbjct: 246 DDVCIEAMSLIVTKDDAFQAKDNVKKLNEAVDRMKATNRQKLQEEYDRLVNGLAMAELAR 305
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+ KTDYG+M+ D+RFA +DKR KLP WIQ+ L +N TNLS + AV +++ + ++MAQ
Sbjct: 694 VLRNKTDYGMMLLVDRRFALNDKRKKLPIWIQQCLKEN-TNLSVDAAVAVARGFFKEMAQ 752
Query: 909 PFTREDMLGVALLSLDQLLEKEHARAEEEEVPR 941
P+ + LG L S++ L K + + V R
Sbjct: 753 PWEYKRDLGTTLFSVETLARKGFLKPSKSSVSR 785
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 596 YGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
Y LL +A VPDG+VCFFT Y Y+ V+ W+ G + L + KL+F+ETQ D+
Sbjct: 547 YEDLLRGLAKTVPDGIVCFFTGYQYMSEVLLGWHRSGFLKELSRHKLIFVETQSVDDT 604
>gi|118376302|ref|XP_001021333.1| DNA repair helicase [Tetrahymena thermophila]
gi|89303100|gb|EAS01088.1| DNA repair helicase [Tetrahymena thermophila SB210]
Length = 807
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 137/415 (33%), Positives = 223/415 (53%), Gaps = 61/415 (14%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDR----------------HKAGENIPVCDFYEKFDAV 44
VS+++ VD C LT+ VR + + + +C +E F+
Sbjct: 89 VSRQQSRDRVDAECKKLTAPWVRAQSFEKSSRDCLIILSKIQGDSDQLELCQLFENFEGK 148
Query: 45 GREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKE 104
E G+Y++ L++ G + +CPYFLAR+ + + I+VY+Y Y+LD K+ ++ KE
Sbjct: 149 KEELKFTEGIYNLEDLRQYGEKNNICPYFLARRLLNQSNIIVYNYMYMLDAKMTEILDKE 208
Query: 105 LARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREE 164
+ +VVFDEAHNIDNVC++ +V INR+ ++ A NI+ L + ++ + KL E
Sbjct: 209 FWKDCLVVFDEAHNIDNVCLEVFTVDINRKLLDMAYKNIEVLGTKVDRVETINHEKLESE 268
Query: 165 YARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRL 224
Y +L++GL++ + + + LP E+ E +P +I+ A+ F+ FLK+ + +LK RL
Sbjct: 269 YNQLLQGLKNKGVLNDNQLNENSKQLPSELTAESIPFHIKKAKPFIQFLKKIVIFLKNRL 328
Query: 225 RVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKD 284
+ + + P F+ D+ YI S HL +
Sbjct: 329 KEKNATTQDPPQFINDM--------------YISS---HLDSY----------------- 354
Query: 285 ISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEP 344
L+ ERL LL +LEIT +FS++ ITH +L++SY +GF II +P
Sbjct: 355 ----------SLKLAGERLNMLLNSLEITETDEFSAIDTITHFTSLLASYARGFKIIYQP 404
Query: 345 FSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQP 399
+ K ++ +P++ F CLD SLA+ VF +F++V++TSGT+SPLD+YPKILNF P
Sbjct: 405 -NPKDGSLNDPLMTFACLDCSLAMTHVFTQFKSVILTSGTMSPLDIYPKILNFNP 458
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 114/211 (54%), Gaps = 16/211 (7%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDR----------------HKAGENIPVCDFYEKFDA 698
+VS+++ VD C LT+ VR + + + +C +E F+
Sbjct: 88 NVSRQQSRDRVDAECKKLTAPWVRAQSFEKSSRDCLIILSKIQGDSDQLELCQLFENFEG 147
Query: 699 VGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSK 758
E G+Y++ L++ G + +CPYFLAR+ + + I+VY+Y Y+LD K+ ++ K
Sbjct: 148 KKEELKFTEGIYNLEDLRQYGEKNNICPYFLARRLLNQSNIIVYNYMYMLDAKMTEILDK 207
Query: 759 ELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLRE 818
E + +VVFDEAHNIDNVC++ +V INR+ ++ A NI+ L + ++ + KL
Sbjct: 208 EFWKDCLVVFDEAHNIDNVCLEVFTVDINRKLLDMAYKNIEVLGTKVDRVETINHEKLES 267
Query: 819 EYARLVEGLRDAQSARETDVVLANPVLPDEI 849
EY +L++GL++ + + + LP E+
Sbjct: 268 EYNQLLQGLKNKGVLNDNQLNENSKQLPSEL 298
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 53/73 (72%)
Query: 577 YLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDN 636
+ L S +E R +++V R+YG LL+D++ VPDG+V FF SY+Y+E ++ W +GI+D
Sbjct: 472 FTQLSSEYEARANMTVTRSYGSLLIDLSKFVPDGIVAFFPSYMYMEKIIYEWNQEGILDE 531
Query: 637 LQKRKLLFIETQD 649
++K KLL+ E++D
Sbjct: 532 MRKYKLLYFESKD 544
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 5/97 (5%)
Query: 458 KGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYY 517
KGH ++EMP+GTGKT SLL+LI +Y+ ++ KL+YC+RTV E+EK +EE+ + D
Sbjct: 2 KGHGIIEMPTGTGKTVSLLALITSYLESNQDKFKKLIYCTRTVVEMEKTIEEVKFILDNR 61
Query: 518 I--KHNEEINMTGLVLSSRKNLCIH---SEFETRDDI 549
K E+ LS+R NLCIH S ++RD +
Sbjct: 62 KQEKPEEQFKFLCTGLSARSNLCIHPNVSRQQSRDRV 98
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 8/90 (8%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++GKTDYGIMI A+KRFARS +SKLP WI++ + D ++S + L++++ ++M +
Sbjct: 638 VMRGKTDYGIMIMAEKRFARSLVKSKLPNWIKKQMPDCNVDISVDITSILTEQFFKKMGK 697
Query: 909 P--------FTREDMLGVALLSLDQLLEKE 930
FT+E + L+ D +E E
Sbjct: 698 AFELDRKSYFTQEQFEEIDKLNQDNKMEAE 727
>gi|429328706|gb|AFZ80466.1| DNA repair helicase rad3/xp-D, putative [Babesia equi]
Length = 851
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 143/404 (35%), Positives = 223/404 (55%), Gaps = 68/404 (16%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLKEM---------GRELGLCPYFLARQAIIHAKI 84
+C ++E + V + GVY++ LKE G+ +CPYF+AR+ I A I
Sbjct: 231 LCGYHENMENVWNRTLVPAGVYTLEGLKEHCNNFKNPTNGKPAPICPYFMARRCIEMANI 290
Query: 85 VVYSYHYLLDPKIANVVSKELARSS----------VVVFDEAHNIDNVCVDSLSVRINRR 134
VV +Y Y++DPK++ V + VVVFDEAHNIDNVC+++LSV +N
Sbjct: 291 VVLNYQYMIDPKVSESVFSHFSTDKSKQTKSKLPIVVVFDEAHNIDNVCIEALSVELNGE 350
Query: 135 TIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEI 194
T+++A ++ LE ++ ++E D L +EY +L+E L+ E +PVLPD+I
Sbjct: 351 TLDQAYTDLAHLEENIRVLREKDEDALLQEYNKLLENLKMDTLDIEG---YMSPVLPDDI 407
Query: 195 LQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAY 254
L + VPG+IR AEHF+ +LK I YLK ++V + E P FL Y
Sbjct: 408 LMKAVPGSIRKAEHFISYLKIIIGYLKKYIKVFEAKSEGPLMFL---------------Y 452
Query: 255 RYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITN 314
R+ T+ I + ++ R+ SLL TL++T+
Sbjct: 453 RFEHETD-----------------------------ILAETMQHTYNRMKSLLNTLKMTS 483
Query: 315 LTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDR 374
+ D SSL ++ TLV +Y+ GF +IV+P+ + ++ +P+L F CLD+S+A++PV +
Sbjct: 484 VGDISSLQLVVDFCTLVGTYSAGFIVIVDPYPNG--SIYDPLLQFSCLDASIAMRPVLEG 541
Query: 375 FQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
F++V++TSGT+SPL+ YPKILNF PV+ S M+ R CL P++
Sbjct: 542 FRSVILTSGTISPLEFYPKILNFTPVLTQSLPMSFDRDCLCPII 585
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 101/181 (55%), Gaps = 22/181 (12%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLKEM---------GRELGLCPYFLARQAIIHAKI 739
+C ++E + V + GVY++ LKE G+ +CPYF+AR+ I A I
Sbjct: 231 LCGYHENMENVWNRTLVPAGVYTLEGLKEHCNNFKNPTNGKPAPICPYFMARRCIEMANI 290
Query: 740 VVYSYHYLLDPKIANVVSKELARSS----------VVVFDEAHNIDNVCVDSLSVRINRR 789
VV +Y Y++DPK++ V + VVVFDEAHNIDNVC+++LSV +N
Sbjct: 291 VVLNYQYMIDPKVSESVFSHFSTDKSKQTKSKLPIVVVFDEAHNIDNVCIEALSVELNGE 350
Query: 790 TIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEI 849
T+++A ++ LE ++ ++E D L +EY +L+E L+ E +PVLPD+I
Sbjct: 351 TLDQAYTDLAHLEENIRVLREKDEDALLQEYNKLLENLKMDTLDIEG---YMSPVLPDDI 407
Query: 850 L 850
L
Sbjct: 408 L 408
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
+D + VFFPY IYPEQ AYM LK ALDA GH +LEMP+GTGKT +L S + +Y A
Sbjct: 4 FWVDGIEVFFPYPKIYPEQLAYMRSLKNALDAHGHAVLEMPTGTGKTVALFSFVASYQLA 63
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDY 516
P +V KL+YC+RT+ E+EK + EL + +Y
Sbjct: 64 RP-EVGKLIYCTRTIHEMEKSLLELKEVINY 93
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 56/74 (75%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ + F+ R D++V+RNYG LL+D +PDG+VCFF SY Y+E +++ WY+ GI+ ++ +
Sbjct: 595 MSTRFDLRTDVTVLRNYGSLLIDFCKHIPDGIVCFFPSYAYMELILSHWYECGILSSIME 654
Query: 640 RKLLFIETQDALDS 653
KL+F+ETQDA+ +
Sbjct: 655 HKLIFMETQDAVST 668
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
I++ K D+G+M+FAD R++R DKRSKLP WI + + + LSTE AV ++K + R MAQ
Sbjct: 758 IIRNKNDFGLMVFADARYSRIDKRSKLPPWILKNIEPSNLFLSTESAVAVAKAFFRNMAQ 817
Query: 909 PFT 911
+T
Sbjct: 818 DYT 820
>gi|261330675|emb|CBH13660.1| TFIIH basal transcription factor complex helicase subunit, putative
[Trypanosoma brucei gambiense DAL972]
Length = 819
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 141/420 (33%), Positives = 232/420 (55%), Gaps = 64/420 (15%)
Query: 10 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGL 69
VD C SLT+ D+ C +++ + G + L PG YS++ LK +G E +
Sbjct: 146 VDAGCRSLTAPWQTDQR--------CVYFDTLENQGFD--LRPGAYSLSDLKRLGEENHV 195
Query: 70 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 129
CPY+LAR+A+ A IV++S+ Y++DP +A V + + +++VV DEAHN+D+VC++++S+
Sbjct: 196 CPYYLARKALKVADIVIHSFLYIVDPIVAEVTKEYMDENTIVVMDEAHNVDDVCIEAMSL 255
Query: 130 RINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPV 189
+ + +A N++ L + MK + KL+EEY RLV GL A+ AR + V
Sbjct: 256 IVTKDDAFQAKDNVKKLNEAVDRMKATNRQKLQEEYDRLVNGLAMAELARSGESTAGVSV 315
Query: 190 ----LPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKP 245
+P +I +E +PG++R A HF+ F++R +++ +VV T++ D
Sbjct: 316 QALNIPQDIAEEAIPGSLRQANHFLAFMQRLVDF------THRVVCRISRTYVAD----- 364
Query: 246 APSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLAS 305
P TFL + + ++ + LR+ ERL
Sbjct: 365 --------------------------------PLTFLTKVKEECSVDVRHLRYLTERLKV 392
Query: 306 LLRTLEITNLTDFSSLVVITHL-ATLVSSYTK------GFAIIVEPFSDKAPTVPNPVLY 358
LL TL+IT+ F ++ +I + TL + YT GF ++ E P++P+PV+
Sbjct: 393 LLNTLQITSAHSFHNVSLIAQMFMTLSTHYTDDRYEKPGFVVVCEASDPTRPSIPDPVIR 452
Query: 359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLA++ VF ++++V++TSGTLSPLD+YPK+L F PVI SF MTL+R C+ P+V
Sbjct: 453 LVCVDASLALREVFAKYRSVILTSGTLSPLDIYPKMLGFSPVIAKSFQMTLSRKCIAPVV 512
Score = 136 bits (342), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 91/133 (68%), Gaps = 8/133 (6%)
Query: 423 AMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
M L I+D+PV FPYEYIYPEQ YM ELKK LD GH +LEMPSGTGKTT+LLSL++AY
Sbjct: 16 GMKLFIEDVPVLFPYEYIYPEQLEYMTELKKGLDQGGHMVLEMPSGTGKTTTLLSLLIAY 75
Query: 483 MNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN---MTGLVLSSRKNLCI 539
++ H + K++YC+RTV E++K EL ++ + EE+ + G+ L+++KNLCI
Sbjct: 76 LHHHADEKRKVVYCTRTVGEVDKTASELRKILGLW--ETEEVGSRPLRGVCLTAKKNLCI 133
Query: 540 HSEFETR---DDI 549
+R DD+
Sbjct: 134 EPSVVSRRHLDDV 146
Score = 122 bits (307), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 107/180 (59%), Gaps = 10/180 (5%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
SV R VD C SLT+ D+ C +++ + G + L PG YS++
Sbjct: 136 SVVSRRHLDDVDAGCRSLTAPWQTDQR--------CVYFDTLENQGFD--LRPGAYSLSD 185
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
LK +G E +CPY+LAR+A+ A IV++S+ Y++DP +A V + + +++VV DEAHN+
Sbjct: 186 LKRLGEENHVCPYYLARKALKVADIVIHSFLYIVDPIVAEVTKEYMDENTIVVMDEAHNV 245
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
D+VC++++S+ + + +A N++ L + MK + KL+EEY RLV GL A+ AR
Sbjct: 246 DDVCIEAMSLIVTKDDAFQAKDNVKKLNEAVDRMKATNRQKLQEEYDRLVNGLAMAELAR 305
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+ KTDYG+M+ D+RFA +DKR KLP WIQ+ L +N TNLS + AV +++ + ++MAQ
Sbjct: 694 VLRNKTDYGMMLLVDRRFALNDKRKKLPIWIQQCLKEN-TNLSVDAAVAVARGFFKEMAQ 752
Query: 909 PFTREDMLGVALLSLDQLLEKEHARAEEEEVPR 941
P+ + LG L S++ L K + + V R
Sbjct: 753 PWEYKRDLGTTLFSVETLARKGFLKPSKSSVSR 785
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 596 YGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
Y LL +A VPDG+VCFFT Y Y+ V+ W+ G + L + KL+F+ETQ D+
Sbjct: 547 YEDLLRGLAKTVPDGIVCFFTGYQYMSEVLLGWHRSGFLKELSRHKLIFVETQSVDDT 604
>gi|399216534|emb|CCF73221.1| unnamed protein product [Babesia microti strain RI]
Length = 790
Score = 253 bits (646), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 153/455 (33%), Positives = 235/455 (51%), Gaps = 83/455 (18%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVR-DRHKAG-----ENIP---------VCDFYEKFDAVG 45
VS DG VD C LT R D+ + IP +C ++E +
Sbjct: 121 VSLVADGNQVDDECRKLTVMWQRVDKINVTTCENVQEIPDIESLNNSGLCGYFEHVEQFW 180
Query: 46 REAPLAPGVYSITKLKE---------MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPK 96
L GVY++ KLKE G++ CPYF+AR+ + A I+V++Y YLLDPK
Sbjct: 181 LPEYLPKGVYTLEKLKEYSKNFVHPFTGKKCSPCPYFVARKCLERANILVFNYQYLLDPK 240
Query: 97 IANVVSKELARSS-------------VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
++ V L R VVVFDEAHNID+VC+++LSV +N +E A N+
Sbjct: 241 VSKTVLYNLIRFKDNFDNIKRDKEPFVVVFDEAHNIDDVCIEALSVELNLAILEGASRNL 300
Query: 144 QTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGNI 203
L ++ M+ D L+ EY LV + D + ++ PV ++L++ +PGNI
Sbjct: 301 LYLSQQIERMEREDMETLKSEYQMLVSEIVDKLDDFTLEDFMS-PVWTGQMLKKYMPGNI 359
Query: 204 RTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEH 263
R A HF+ F++ + YL
Sbjct: 360 RKATHFIKFMQSIVCYL------------------------------------------- 376
Query: 264 LKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVV 323
K ++V ++ + P TFL ++S+++ I+ FC RL L+ TL+ T++ D S L +
Sbjct: 377 -KEYIQVPEIKSQGPLTFLHNLSTEIGIDVSSFNFCYNRLKLLITTLKFTSINDLSPLFI 435
Query: 324 ITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSG 383
+ TL+ +Y+KGF +IVEPF + A + +P+L+ CLD+SLAIK VF+ F++V++TSG
Sbjct: 436 VADFCTLIVTYSKGFIVIVEPFPE-AVGIYDPILHLSCLDASLAIKHVFNTFKSVILTSG 494
Query: 384 TLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
T+SPL+ YPKIL+F PV+ SF M+L R C+ P++
Sbjct: 495 TISPLEFYPKILDFTPVLTESFPMSLDRKCICPII 529
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 80/116 (68%), Gaps = 2/116 (1%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
+D + VFFPY +YPEQ AY+ LK+ALDA GH +LEMP+GTGKT +L S I AY A
Sbjct: 4 FWVDGIQVFFPYSKVYPEQLAYLRCLKRALDAGGHAVLEMPTGTGKTVALFSFITAYQMA 63
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIH 540
HP KL+YC+RT+ E+EK + EL ++ +Y + N ++ + L+SR+NLCIH
Sbjct: 64 HP-QSPKLIYCTRTIQEMEKALMELEKVIEYRSQQLNTPTDILAIGLASRRNLCIH 118
Score = 106 bits (265), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 102/211 (48%), Gaps = 37/211 (17%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVR-DRHKAG-----ENIP---------VCDFYEKFDAVG 700
VS DG VD C LT R D+ + IP +C ++E +
Sbjct: 121 VSLVADGNQVDDECRKLTVMWQRVDKINVTTCENVQEIPDIESLNNSGLCGYFEHVEQFW 180
Query: 701 REAPLAPGVYSITKLKE---------MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPK 751
L GVY++ KLKE G++ CPYF+AR+ + A I+V++Y YLLDPK
Sbjct: 181 LPEYLPKGVYTLEKLKEYSKNFVHPFTGKKCSPCPYFVARKCLERANILVFNYQYLLDPK 240
Query: 752 IANVVSKELARSS-------------VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
++ V L R VVVFDEAHNID+VC+++LSV +N +E A N+
Sbjct: 241 VSKTVLYNLIRFKDNFDNIKRDKEPFVVVFDEAHNIDDVCIEALSVELNLAILEGASRNL 300
Query: 799 QTLEGTLKEMKEADSAKLREEYARLVEGLRD 829
L ++ M+ D L+ EY LV + D
Sbjct: 301 LYLSQQIERMEREDMETLKSEYQMLVSEIVD 331
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 69/94 (73%), Gaps = 1/94 (1%)
Query: 560 VDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYL 619
+D C+ P +V ++ + + + F+ RDD +V+R+YG L+VD++ VPDG+VCFF SYL
Sbjct: 520 LDRKCICPI-IVSRGSNQVPITTKFDARDDQNVLRSYGSLIVDLSKHVPDGMVCFFPSYL 578
Query: 620 YLESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
Y+E ++++WY+ GII N+ K KL+F+ET+D + +
Sbjct: 579 YMEHILSAWYESGIIANIMKNKLIFMETKDVVTT 612
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 8/105 (7%)
Query: 815 KLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSK 874
K R E+ R+ G+++++ D + I++ K+D+G++IFAD +RSD+R
Sbjct: 669 KARLEFMRIHYGIQESEFL-NFDAMRQAAQCVGRIIRNKSDFGLIIFAD--CSRSDRRMA 725
Query: 875 LPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQP-----FTRED 914
LP WI ++L + L+TE A+ ++K +LR MAQ FTR D
Sbjct: 726 LPPWILKHLDASSLCLNTEMAISVTKTFLRNMAQNYEPSRFTRLD 770
>gi|449016631|dbj|BAM80033.1| nucleotide excision repair protein XP-D [Cyanidioschyzon merolae
strain 10D]
Length = 746
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 150/438 (34%), Positives = 233/438 (53%), Gaps = 82/438 (18%)
Query: 10 VDGRCHSLTSSSVRDR------HKAGENIP--VCDFYEKFDAVGREAPLAPG--VYSITK 59
V+ C +LT+S VR+R H +IP +C FYE+F + + + P YSI+
Sbjct: 128 VESACRALTASWVRERAYQSTDHGHQVDIPPGLCPFYERFSSAASQNFILPAGAAYSISD 187
Query: 60 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
L+E G +G CPYFLARQ + A IVVYSY Y+LDP+++ VVS + +++VFDEAHNI
Sbjct: 188 LREFGARVGWCPYFLARQMVPFAHIVVYSYQYILDPRVSRVVSSDFGPDTIIVFDEAHNI 247
Query: 120 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEG-------- 171
DNVC ++ SV++N + ++ A N+ TL + EMK +L +EY RL G
Sbjct: 248 DNVCTEAFSVQLNDQLLQCAARNLNTLSSRVHEMKRRGVERLHQEYERLAWGISTADRES 307
Query: 172 -LRDAQ------SARETDVVLANP----VLPDEILQEVVPGNIRTAEHFVGFLKRFIEYL 220
LRD Q SA + VV + P ++PD++ + P I++ F+ FL++ + Y
Sbjct: 308 QLRDMQIAGLDPSALPSLVVESAPDASAMIPDQMRISLCP-EIQSTVGFLQFLRQILSY- 365
Query: 221 KTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPAT 280
VQ++V + +++E+
Sbjct: 366 -----VQELVDSN--------------------------------------LIMEETAQR 382
Query: 281 FLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAI 340
+ ++ ER+ L+ ++RL SLL LEI+++ FS L ++ TL+ +Y+ GF +
Sbjct: 383 MALAVCHRLSTERRALQLASDRLVSLLWALEISDVAAFSPLQKLSDFCTLLGTYSAGFVV 442
Query: 341 IVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPV 400
I +P + + CLD+SLA++PV RF++VVITSGTLSPL YP++L F+
Sbjct: 443 INDP--------EERIFHLACLDASLAMRPVLTRFKSVVITSGTLSPLWFYPRLLTFRAA 494
Query: 401 IMHSFSMTLARPCLLPMV 418
I SF M+L R CL P++
Sbjct: 495 IAESFPMSLERACLCPLI 512
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 122/210 (58%), Gaps = 14/210 (6%)
Query: 665 VDGRCHSLTSSSVRDR------HKAGENIP--VCDFYEKFDAVGREAPLAPG--VYSITK 714
V+ C +LT+S VR+R H +IP +C FYE+F + + + P YSI+
Sbjct: 128 VESACRALTASWVRERAYQSTDHGHQVDIPPGLCPFYERFSSAASQNFILPAGAAYSISD 187
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L+E G +G CPYFLARQ + A IVVYSY Y+LDP+++ VVS + +++VFDEAHNI
Sbjct: 188 LREFGARVGWCPYFLARQMVPFAHIVVYSYQYILDPRVSRVVSSDFGPDTIIVFDEAHNI 247
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDA---Q 831
DNVC ++ SV++N + ++ A N+ TL + EMK +L +EY RL G+ A
Sbjct: 248 DNVCTEAFSVQLNDQLLQCAARNLNTLSSRVHEMKRRGVERLHQEYERLAWGISTADRES 307
Query: 832 SARETDVVLANP-VLPDEILQGKTDYGIMI 860
R+ + +P LP +++ D MI
Sbjct: 308 QLRDMQIAGLDPSALPSLVVESAPDASAMI 337
Score = 110 bits (276), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
I+DL V FPY YPEQ YM LK+ALDA GH ++EMPSGTGKT S+LSL +Y++ P
Sbjct: 5 IEDLAVNFPYREPYPEQLQYMRSLKRALDAGGHAVIEMPSGTGKTVSILSLASSYISRWP 64
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLF-DYYIKHNEEINMTGLVLSSRKNLCIHSE 542
L KL+YC+RTV E+EKV+ E RLF + + + L++R +LC+ E
Sbjct: 65 LVYRKLVYCTRTVEEMEKVLAEAKRLFATMQANRGDPSELLCVGLAARSHLCVLEE 120
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 80/138 (57%), Gaps = 11/138 (7%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S + TR +IS+ RNYG+LL+++A +VPDGVVCFF SY ++ +V+ W + I+ LQK
Sbjct: 522 ISSQYSTRKEISIARNYGELLLNMADIVPDGVVCFFPSYEFMHDIVSQWVESDILQRLQK 581
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAV 699
KL F+ETQDA+++ K GR L S + R +A E I DF +
Sbjct: 582 LKLTFVETQDAVEAGLAIKHYRMACDAGRGAVLLSVA---RGRAAEGI---DFDNHY--- 632
Query: 700 GREAPL--APGVYSITKL 715
GR A L P YS ++L
Sbjct: 633 GRCALLFGVPFQYSESRL 650
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYGIMIFAD+R+AR KLP+WI ++L D L AV + +L QMAQ
Sbjct: 685 VIRNKQDYGIMIFADRRYARPALLQKLPRWIAQFLDDAYIGLDIGTAVNHAGHFLLQMAQ 744
Query: 909 PF 910
P
Sbjct: 745 PL 746
>gi|71410154|ref|XP_807386.1| TFIIH basal transcription factor complex helicase subunit
[Trypanosoma cruzi strain CL Brener]
gi|70871375|gb|EAN85535.1| TFIIH basal transcription factor complex helicase subunit, putative
[Trypanosoma cruzi]
Length = 804
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 140/428 (32%), Positives = 225/428 (52%), Gaps = 63/428 (14%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ +R + VD C SLT+ C +++ + + E P PG YS+ L
Sbjct: 122 VASQRYPEDVDAGCRSLTAPWQTSNR--------CAYFDNLERIPFELP--PGAYSVEDL 171
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K+ G LCPY+L R+A+ IVV+S+ Y++DP +A V +++VV DE HN+D
Sbjct: 172 KQFGEAHQLCPYYLVRKALRVVDIVVHSFLYIVDPIVAEVTKGYFNENAIVVMDEGHNVD 231
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
+VC++++S+ I + +A N++ L +K + +L++EY RLV GL + AR
Sbjct: 232 DVCIEAMSLIITKEDAAQAKENVKLLNAAADHLKATNRQQLQDEYDRLVNGLAMVEMARS 291
Query: 181 TDVVL---ANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATF 237
D ++ P +P EI +E +PG++R A HF+ F++R +++ +VV T+
Sbjct: 292 VDSMMMPVQAPSIPSEIAEEAIPGSLRQANHFLSFIQRLVDF------THRVVCRISRTY 345
Query: 238 LKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLR 297
+ D P TFL + + ++ + R
Sbjct: 346 VAD-------------------------------------PLTFLSKVRDECAVDIRHFR 368
Query: 298 FCAERLASLLRTLEITNLTDFSSLVVITHL-ATLVSSYTK------GFAIIVEPFSDKAP 350
+ ERL L+ TL+ITN F ++ +I + TL + YT GF ++ E P
Sbjct: 369 YLTERLKVLMNTLQITNSHKFRNVSLIAQMYMTLSTHYTDDRYEKPGFVVVCEAHDPTRP 428
Query: 351 TVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLA 410
VP+PV+ C+D+SLA++ F ++++VV+TSGTLSPLD+YPKIL F PVI SF MTL+
Sbjct: 429 AVPDPVIRLVCVDASLALREAFSKYRSVVLTSGTLSPLDIYPKILGFTPVIAKSFQMTLS 488
Query: 411 RPCLLPMV 418
R C+ P+V
Sbjct: 489 RKCIAPVV 496
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/122 (52%), Positives = 88/122 (72%), Gaps = 6/122 (4%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L I+D+ V FPYEYIYPEQ YM ELKK LD GH +LEMPSGTGKTT+LLSL++AY+
Sbjct: 1 MRLFIEDVLVLFPYEYIYPEQLEYMTELKKGLDQGGHIVLEMPSGTGKTTTLLSLLIAYI 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN----MTGLVLSSRKNLCI 539
+ H + K++YC+RTV E+ K + EL +L + + + +E+ + GL L+++KNLCI
Sbjct: 61 HYHADEKRKVIYCTRTVEEMTKTMGELRKLLELW--NTDELGSNRPLRGLCLTAKKNLCI 118
Query: 540 HS 541
S
Sbjct: 119 ES 120
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 118/234 (50%), Gaps = 13/234 (5%)
Query: 621 LESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDR 680
L ++ W + N R L ++ +V+ +R + VD C SLT+
Sbjct: 87 LRKLLELWNTDELGSNRPLRGLCLTAKKNLCIESTVASQRYPEDVDAGCRSLTAPWQTSN 146
Query: 681 HKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIV 740
C +++ + + E P PG YS+ LK+ G LCPY+L R+A+ IV
Sbjct: 147 R--------CAYFDNLERIPFELP--PGAYSVEDLKQFGEAHQLCPYYLVRKALRVVDIV 196
Query: 741 VYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 800
V+S+ Y++DP +A V +++VV DE HN+D+VC++++S+ I + +A N++
Sbjct: 197 VHSFLYIVDPIVAEVTKGYFNENAIVVMDEGHNVDDVCIEAMSLIITKEDAAQAKENVKL 256
Query: 801 LEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVL---ANPVLPDEILQ 851
L +K + +L++EY RLV GL + AR D ++ P +P EI +
Sbjct: 257 LNAAADHLKATNRQQLQDEYDRLVNGLAMVEMARSVDSMMMPVQAPSIPSEIAE 310
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+ KTDYG+M+ D+RFA +DKR KLP WIQ+ L +N TNLS + A+ +++ + ++MAQ
Sbjct: 678 VLRNKTDYGMMLLVDRRFALNDKRKKLPIWIQQCLKEN-TNLSVDAAIAVARGFFKEMAQ 736
Query: 909 PFTREDMLGVALLSLDQLLEKEHARAEEEEVP 940
P+ + LG L S + L K + + VP
Sbjct: 737 PWEHKRDLGTTLFSKETLALKGFLKPSKRSVP 768
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 596 YGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
Y LL + VPDG+VCFFT Y Y+ V+ W+ G + L + KL+FIETQ
Sbjct: 531 YEDLLRGLGKTVPDGIVCFFTGYQYMGEVLLGWHRSGFLKELAQYKLIFIETQ 583
>gi|407860924|gb|EKG07586.1| TFIIH basal transcription factor complex helicase subunit, putative
[Trypanosoma cruzi]
Length = 780
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 140/428 (32%), Positives = 225/428 (52%), Gaps = 63/428 (14%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ +R + VD C SLT+ + C +++ + + E P PG YS+ L
Sbjct: 98 VAAQRYPEDVDAGCRSLTAP--------WQTSNRCAYFDNLERIPFELP--PGAYSVEDL 147
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K G LCPY+L R+A+ IVV+S+ Y++DP +A V +++VV DE HN+D
Sbjct: 148 KRFGEAHQLCPYYLVRKALRVVDIVVHSFLYIVDPIVAEVTKGYFNENAIVVMDEGHNVD 207
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
+VC++++S+ I + +A N++ L +K + +L++EY RLV GL + AR
Sbjct: 208 DVCIEAMSLIITKEDAAQAKENVKQLNAAADHLKATNRQQLQDEYDRLVNGLAMVEMARS 267
Query: 181 TDVVLAN---PVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATF 237
D ++ P +P EI +E +PG++R A HF+ F++R +++ +VV T+
Sbjct: 268 VDSMMMTVQAPSIPSEIAEEAIPGSLRQANHFLSFIQRLVDF------THRVVCRISRTY 321
Query: 238 LKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLR 297
+ D P TFL + + ++ + R
Sbjct: 322 VAD-------------------------------------PLTFLSKVRDECAVDIRHFR 344
Query: 298 FCAERLASLLRTLEITNLTDFSSLVVITHL-ATLVSSYTK------GFAIIVEPFSDKAP 350
+ ERL L+ TL+ITN F ++ +I + TL + YT GF ++ E P
Sbjct: 345 YLTERLKVLMNTLQITNSHKFRNVSLIAQMYMTLSTHYTDDRYEKPGFVVVCEAHDPTRP 404
Query: 351 TVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLA 410
VP+PV+ C+D+SLA++ F ++++VV+TSGTLSPLD+YPKIL F PVI SF MTL+
Sbjct: 405 AVPDPVIRLVCVDASLALREAFSKYRSVVLTSGTLSPLDIYPKILGFTPVIAKSFQMTLS 464
Query: 411 RPCLLPMV 418
R C+ P+V
Sbjct: 465 RKCIAPVV 472
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 118/234 (50%), Gaps = 13/234 (5%)
Query: 621 LESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDR 680
L ++ W + N R L ++ +V+ +R + VD C SLT+
Sbjct: 63 LRKLLELWNTDELGSNRPLRGLCLTAKKNLCIESTVAAQRYPEDVDAGCRSLTAP----- 117
Query: 681 HKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIV 740
+ C +++ + + E P PG YS+ LK G LCPY+L R+A+ IV
Sbjct: 118 ---WQTSNRCAYFDNLERIPFELP--PGAYSVEDLKRFGEAHQLCPYYLVRKALRVVDIV 172
Query: 741 VYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 800
V+S+ Y++DP +A V +++VV DE HN+D+VC++++S+ I + +A N++
Sbjct: 173 VHSFLYIVDPIVAEVTKGYFNENAIVVMDEGHNVDDVCIEAMSLIITKEDAAQAKENVKQ 232
Query: 801 LEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLAN---PVLPDEILQ 851
L +K + +L++EY RLV GL + AR D ++ P +P EI +
Sbjct: 233 LNAAADHLKATNRQQLQDEYDRLVNGLAMVEMARSVDSMMMTVQAPSIPSEIAE 286
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 70/98 (71%), Gaps = 6/98 (6%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M ELKK LD GH +LEMPSGTGKTT+LLSL++AY++ H + K++YC+RTV E+ K +
Sbjct: 1 MTELKKGLDQGGHIVLEMPSGTGKTTTLLSLLIAYIHYHADEKRKVIYCTRTVEEMTKTM 60
Query: 508 EELARLFDYYIKHNEEIN----MTGLVLSSRKNLCIHS 541
EL +L + + + +E+ + GL L+++KNLCI S
Sbjct: 61 GELRKLLELW--NTDELGSNRPLRGLCLTAKKNLCIES 96
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+ KTDYG+M+ D+RFA +DKR KLP WIQ+ L +N TNLS + A+ +++ + ++MAQ
Sbjct: 654 VLRNKTDYGMMLLVDRRFALNDKRKKLPIWIQQCLKEN-TNLSVDAAIAVARGFFKEMAQ 712
Query: 909 PFTREDMLGVALLSLDQLLEKEHARAEEEEVP 940
P+ + LG L S + L K + + VP
Sbjct: 713 PWEHKRDLGTTLFSKETLALKGFLKPSKRSVP 744
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 596 YGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
Y LL + VPDG+VCFFT Y Y+ V+ W+ G + L + KL+FIETQ
Sbjct: 507 YEDLLRGLGKTVPDGIVCFFTGYQYMGEVLLGWHRSGFLKELAQYKLIFIETQ 559
>gi|407426334|gb|EKF39660.1| TFIIH basal transcription factor complex helicase subunit, putative
[Trypanosoma cruzi marinkellei]
Length = 780
Score = 249 bits (636), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 139/428 (32%), Positives = 226/428 (52%), Gaps = 63/428 (14%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ +R + VD C SLT+ + C +++ + + E P PG YS+ L
Sbjct: 98 VASQRYPEDVDAGCRSLTAP--------WQTSNRCAYFDNLECIPFELP--PGAYSVEDL 147
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K+ G LCPY+L R+A+ IVV+S+ Y++DP +A V +++VV DE HN+D
Sbjct: 148 KQFGESHQLCPYYLVRKALRVVDIVVHSFLYIVDPIVAEVTKGYFNENTIVVMDEGHNVD 207
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
+VC++++S+ I + +A N++ L +K + +L++EY RLV GL + AR
Sbjct: 208 DVCIEAMSLIITKEDAAQAKENVKQLNAAADHLKATNRQQLQDEYDRLVNGLAMVEMARS 267
Query: 181 TDVVL---ANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATF 237
D ++ P +P +I +E +PG++R A HF+ F++R +++ +VV T+
Sbjct: 268 VDGMMMPVQAPRIPSDIAEEAIPGSLRQANHFLSFIQRLVDF------THRVVCRISRTY 321
Query: 238 LKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLR 297
+ D P TFL + + ++ + R
Sbjct: 322 VAD-------------------------------------PLTFLSKVRDECAVDIRHFR 344
Query: 298 FCAERLASLLRTLEITNLTDFSSLVVITHL-ATLVSSYTK------GFAIIVEPFSDKAP 350
+ ERL L+ TL+ITN F ++ +I + TL + YT GF ++ E P
Sbjct: 345 YLTERLKVLMNTLQITNSHKFRNVALIAQMYMTLSTHYTDDRYEKPGFVVVCEAHDPTRP 404
Query: 351 TVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLA 410
VP+PV+ C+D+SLA++ F ++++VV+TSGTLSPLD+YPKIL F PVI SF MTL+
Sbjct: 405 AVPDPVIRLVCVDASLALREAFSKYRSVVLTSGTLSPLDIYPKILGFTPVIAKSFQMTLS 464
Query: 411 RPCLLPMV 418
R C+ P+V
Sbjct: 465 RKCIAPVV 472
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 119/234 (50%), Gaps = 13/234 (5%)
Query: 621 LESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDR 680
L ++ W + N R L ++ +V+ +R + VD C SLT+
Sbjct: 63 LRKLLELWNTDESVSNRPLRGLCLTAKKNLCIESTVASQRYPEDVDAGCRSLTAP----- 117
Query: 681 HKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIV 740
+ C +++ + + E P PG YS+ LK+ G LCPY+L R+A+ IV
Sbjct: 118 ---WQTSNRCAYFDNLECIPFELP--PGAYSVEDLKQFGESHQLCPYYLVRKALRVVDIV 172
Query: 741 VYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 800
V+S+ Y++DP +A V +++VV DE HN+D+VC++++S+ I + +A N++
Sbjct: 173 VHSFLYIVDPIVAEVTKGYFNENTIVVMDEGHNVDDVCIEAMSLIITKEDAAQAKENVKQ 232
Query: 801 LEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVL---ANPVLPDEILQ 851
L +K + +L++EY RLV GL + AR D ++ P +P +I +
Sbjct: 233 LNAAADHLKATNRQQLQDEYDRLVNGLAMVEMARSVDGMMMPVQAPRIPSDIAE 286
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 67/96 (69%), Gaps = 2/96 (2%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M ELKK LD GH +LEMPSGTGKTT+LLSL++AY++ H + K++YC+RTV E+ K +
Sbjct: 1 MTELKKGLDHGGHIVLEMPSGTGKTTTLLSLLIAYIHHHADEKRKVIYCTRTVEEMTKTM 60
Query: 508 EELARLFDYYIKHNEEIN--MTGLVLSSRKNLCIHS 541
EL +L + + N + GL L+++KNLCI S
Sbjct: 61 GELRKLLELWNTDESVSNRPLRGLCLTAKKNLCIES 96
Score = 82.8 bits (203), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+ KTDYG+M+ D+RFA +DKR KLP WIQ+ L +N TNLS + A+ +++ + ++MAQ
Sbjct: 654 VLRNKTDYGMMLLVDRRFALNDKRKKLPIWIQQCLKEN-TNLSVDAAIAVARGFFKEMAQ 712
Query: 909 PFTREDMLGVALLSLDQLLEKEHARAEEEEVP 940
P+ + LG L S + L K + + VP
Sbjct: 713 PWEHKRDLGTTLFSKETLALKGFLKPSKRSVP 744
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 596 YGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
Y LL ++ VPDG+VCFFT Y Y+ V+ W+ G + L + KL+FIETQ
Sbjct: 507 YEDLLRGLSKTVPDGIVCFFTGYQYMGEVLLGWHRSGFLKELAQYKLIFIETQ 559
>gi|303389494|ref|XP_003072979.1| Rad3/XPD DNA repair helicase [Encephalitozoon intestinalis ATCC
50506]
gi|303302123|gb|ADM11619.1| Rad3/XPD DNA repair helicase [Encephalitozoon intestinalis ATCC
50506]
Length = 743
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 148/387 (38%), Positives = 215/387 (55%), Gaps = 60/387 (15%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
CDF+E ++ E P+A VY ++LKE+G + G+CPY+L R++I ++Y Y+YL+D
Sbjct: 143 CDFFENLNSF-HEVPVA--VYDFSQLKEIGEKKGICPYYLVRRSIPVCDCIIYPYNYLID 199
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 154
P+I +VSKEL +SVV+FDEAHNID+ C++ +S+ I R +E A I+ LE LKE
Sbjct: 200 PRIYTIVSKELGPNSVVIFDEAHNIDSHCIEVMSIEIKRNILEGASRAIRNLENLLKEKG 259
Query: 155 EA---DSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVG 211
A +SA+ + +LVE + D+ + E E +PGN+R + HFV
Sbjct: 260 SAAGKESAQYEQMKEKLVEPVIDS---------IPYFYATGEGNYEFIPGNLRNSFHFVS 310
Query: 212 FLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQ 271
LKR E+ KT+L+ + ES +F K I
Sbjct: 311 ALKRIAEFFKTKLKTTHLTTESTESFCKSI------------------------------ 340
Query: 272 QVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLV 331
K++S +E+K LRFC++RL L ++L I + D L + +T+V
Sbjct: 341 -----------KELS---FVEKKALRFCSQRLGMLSQSLGIDD-EDMGHLKTVADFSTMV 385
Query: 332 SSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMY 391
S Y+KGF +I EPF +APTV NP L CLDSS+A+ VF RF+ V+ITSGT+SP+DMY
Sbjct: 386 SMYSKGFVVIFEPFDSQAPTVFNPTLRLACLDSSIAMSSVFRRFRNVIITSGTMSPIDMY 445
Query: 392 PKILNFQPVIMHSFSMTLARPCLLPMV 418
PKILNF P + TL R + P++
Sbjct: 446 PKILNFVPSRIAEIGATLDRNSISPLI 472
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 95/144 (65%), Gaps = 6/144 (4%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
CDF+E ++ E P+A VY ++LKE+G + G+CPY+L R++I ++Y Y+YL+D
Sbjct: 143 CDFFENLNSF-HEVPVA--VYDFSQLKEIGEKKGICPYYLVRRSIPVCDCIIYPYNYLID 199
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 809
P+I +VSKEL +SVV+FDEAHNID+ C++ +S+ I R +E A I+ LE LKE
Sbjct: 200 PRIYTIVSKELGPNSVVIFDEAHNIDSHCIEVMSIEIKRNILEGASRAIRNLENLLKEKG 259
Query: 810 EA---DSAKLREEYARLVEGLRDA 830
A +SA+ + +LVE + D+
Sbjct: 260 SAAGKESAQYEQMKEKLVEPVIDS 283
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 85/120 (70%), Gaps = 5/120 (4%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVA-- 481
M + ID++ V+FPY+ +YPEQ YM E+K++LD GHCL+EMPSGTGKT +LLS+ ++
Sbjct: 1 MKIQIDEVLVYFPYDSVYPEQLKYMREVKRSLDNNGHCLIEMPSGTGKTVALLSMTISYQ 60
Query: 482 -YMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIH 540
YM + + K++YCSRTV E+EK ++EL + YIK + GL L+SRKNLC++
Sbjct: 61 LYMKSKNTNF-KIIYCSRTVSEVEKALKELDGVVG-YIKKHRPFEFLGLGLTSRKNLCLN 118
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L + F R D SV+RNYG L+V+++ VVPDG+VCFF SY+Y+E +V+ W + II + K
Sbjct: 500 LTTSFSLRSDPSVVRNYGHLMVELSKVVPDGIVCFFPSYMYMEEIVSLWAETNIISEISK 559
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK-FDA 698
KL+F+ET D ++ +GR L S + R K E + D Y +
Sbjct: 560 NKLVFVETPDGRETEMALANYKRACNNGRGGMLFSVA---RGKVSEGVDFEDGYGRCVVM 616
Query: 699 VGREAPLAPGVYSITKLKEMGRELGLCPY-FLARQAIIHA 737
+G V +L + E G+ Y FL A+ HA
Sbjct: 617 LGVPFQYTESVRLKKRLDFLREEYGIKEYDFLTFDAMRHA 656
Score = 75.9 bits (185), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 46/60 (76%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+ K+DYG+MI AD+RF R+DK+SKLPKWIQ + NLS + A+ +++R+ R+MAQ
Sbjct: 663 VLRNKSDYGLMILADERFERNDKKSKLPKWIQSCIDGGNCNLSVDMALSIARRFFREMAQ 722
>gi|403220542|dbj|BAM38675.1| DNA excision-repair helicase [Theileria orientalis strain Shintoku]
Length = 851
Score = 246 bits (628), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 149/427 (34%), Positives = 219/427 (51%), Gaps = 93/427 (21%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLKE---------MGRELGLCPYFLARQAIIHAKI 84
+C +YE + V + GVY++ LKE G+ +CPYF+AR++I HA I
Sbjct: 212 LCGYYETMERVWNPTMIPSGVYTLEGLKEYSKNFKNANTGKPSPICPYFMARRSIEHANI 271
Query: 85 VVYSYHYLLDPKIANVVSKELARSS--------------------------------VVV 112
VV +Y Y++DPK+++ V L S VVV
Sbjct: 272 VVLNYQYMIDPKVSDAVFSHLCTESYLNMTKENPFSKEELIVPLTTNLGKDKTKLPIVVV 331
Query: 113 FDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL 172
FDEAHNIDNVC+++LSV ++ T++ A ++ LE + E+++ D L EEY +LVE
Sbjct: 332 FDEAHNIDNVCIEALSVELSTETLDNAYSDLTRLEENVNELRQRDQQLLLEEYQKLVENT 391
Query: 173 RDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQE 232
E NPVL +IL + VPG+IR AEHF+
Sbjct: 392 NFDSIDIEG---YMNPVLRADILAKAVPGSIRKAEHFI---------------------- 426
Query: 233 SPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIE 292
+FLK + +LK ++VQ+ E P FL + I
Sbjct: 427 ---SFLKVVIG-------------------YLKKYIKVQEAKSEGPLMFLYRFEHETEIS 464
Query: 293 RKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTV 352
+ ++ R+ SLL TL++T++ D +SL ++ TLV +Y+ GF +IVEP+ PT
Sbjct: 465 SEVMQHTYNRMKSLLNTLKLTSIGDITSLQLVVDFCTLVGTYSNGFIVIVEPY----PTS 520
Query: 353 P-NPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLAR 411
+P+L F CLD+S+A+KPV D FQ+VV+TSGT+SPL+ YPKILNF PV+ S M+ R
Sbjct: 521 TYDPLLQFSCLDASIAMKPVLDNFQSVVLTSGTISPLEFYPKILNFTPVLTQSLPMSFDR 580
Query: 412 PCLLPMV 418
CL P++
Sbjct: 581 DCLCPII 587
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 100/203 (49%), Gaps = 44/203 (21%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLKE---------MGRELGLCPYFLARQAIIHAKI 739
+C +YE + V + GVY++ LKE G+ +CPYF+AR++I HA I
Sbjct: 212 LCGYYETMERVWNPTMIPSGVYTLEGLKEYSKNFKNANTGKPSPICPYFMARRSIEHANI 271
Query: 740 VVYSYHYLLDPKIANVVSKELARSS--------------------------------VVV 767
VV +Y Y++DPK+++ V L S VVV
Sbjct: 272 VVLNYQYMIDPKVSDAVFSHLCTESYLNMTKENPFSKEELIVPLTTNLGKDKTKLPIVVV 331
Query: 768 FDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL 827
FDEAHNIDNVC+++LSV ++ T++ A ++ LE + E+++ D L EEY +LVE
Sbjct: 332 FDEAHNIDNVCIEALSVELSTETLDNAYSDLTRLEENVNELRQRDQQLLLEEYQKLVENT 391
Query: 828 RDAQSARETDVVLANPVLPDEIL 850
E NPVL +IL
Sbjct: 392 NFDSIDIEG---YMNPVLRADIL 411
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 81/139 (58%), Gaps = 22/139 (15%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
I+ + V+FPY IYPEQ AYM LK ALDAKGH +LEMP+GTGKT +L S + +Y A P
Sbjct: 6 IEGIEVYFPYPKIYPEQIAYMRSLKNALDAKGHAVLEMPTGTGKTVALFSFVSSYQLAKP 65
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI------------------NMTGL 529
++ KL+YC+RT+ E+EK + EL + Y NE++ +
Sbjct: 66 -ELGKLVYCTRTIHEMEKSLLELREVIAY---RNEQMVKKEESEKESSENKKKNGYFLAV 121
Query: 530 VLSSRKNLCIHSEFETRDD 548
L SR+NLCIH E + D
Sbjct: 122 GLCSRRNLCIHPEVSSIAD 140
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 561 DIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLY 620
D C+ P +V + +++ + F+ R DI+V+RNYG LL+D +PDG+VCFF SY Y
Sbjct: 579 DRDCLCPI-IVSKGANQVHISTKFDLRTDITVLRNYGALLIDFCKHIPDGIVCFFPSYAY 637
Query: 621 LESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+E +++ WY+ GI+ ++ + KL+F+ET+D + +
Sbjct: 638 MELILSHWYESGILASIMEHKLIFMETKDPVTT 670
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 46/63 (73%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
I++ K D+G+M+FAD R++R+DK+SKLP WI + + + L+TE AV ++K + R MAQ
Sbjct: 760 IIRNKADFGLMVFADSRYSRADKKSKLPPWILKSIDPSHLFLTTESAVAVAKTFFRNMAQ 819
Query: 909 PFT 911
+T
Sbjct: 820 EYT 822
>gi|340055622|emb|CCC49943.1| TFIIH basal transcription factor, private [Trypanosoma vivax Y486]
Length = 889
Score = 246 bits (627), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 144/420 (34%), Positives = 227/420 (54%), Gaps = 64/420 (15%)
Query: 10 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGL 69
VD C SL + + C +++ D+ E P PG YS+ LK+ G +
Sbjct: 216 VDAGCRSLIAPWQTSQR--------CSYFDTLDSAEFELP--PGAYSVDDLKQFGETHHV 265
Query: 70 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 129
CPY+LAR+A+ A IVV+S+ Y++DP +A V + L +++VV DE HN+D+VC++++S+
Sbjct: 266 CPYYLARKALKAADIVVHSFLYIVDPIVAEVTKEYLNENTIVVMDEGHNVDDVCIEAMSL 325
Query: 130 RINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR----ETDVVL 185
I + +A +++ L + +K + +L++EY RLV GL A+ AR T +
Sbjct: 326 IITKDDAVQAKESLKQLNRAVDYIKATNRQRLQDEYDRLVNGLAMAEMARAAEPATFAPV 385
Query: 186 ANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKP 245
P +P +I +E VPG +R A HF+ F++R +++ +VV T++ D
Sbjct: 386 RTPSIPQDIAEEAVPGTLRQANHFLAFMQRLVDF------THRVVCRISRTYVAD----- 434
Query: 246 APSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLAS 305
P TFL + + ++ + LR+ ERL +
Sbjct: 435 --------------------------------PLTFLTKVREECSVDLRHLRYLTERLKA 462
Query: 306 LLRTLEITNLTDFSSLVVITHL-ATLVSSYTK------GFAIIVEPFSDKAPTVPNPVLY 358
L+ TL+ITN F ++V+I + TL + YT GF ++ E P VP+PV+
Sbjct: 463 LMNTLQITNTYGFRNIVLIAQMYMTLATHYTDDRYERPGFVVVCEAHDPTRPAVPDPVVR 522
Query: 359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLA++ VF R ++VV+TSGTLSPLD+YPKIL F PVI SF MTL+R C+ P+V
Sbjct: 523 LVCVDASLALRDVFSRHRSVVLTSGTLSPLDIYPKILGFSPVISKSFQMTLSRKCIAPVV 582
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/142 (47%), Positives = 90/142 (63%), Gaps = 9/142 (6%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M I+D+PV FPYEYIYPEQ YM ELKK LD GH +LEMPSGTGKTT+LLSL++AY+
Sbjct: 87 MKFFIEDVPVLFPYEYIYPEQLEYMTELKKGLDRGGHMVLEMPSGTGKTTTLLSLLLAYL 146
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNE-EINMTGLVLSSRKNLCIHSE 542
N H + K++YC+RTV E+ K + EL +L + + G+ L+++KNLCI
Sbjct: 147 NHHASERRKVVYCTRTVEEVVKTLGELRKLLRLWESEGTLSRPLHGVCLTAKKNLCI--- 203
Query: 543 FETRDDISVIRNYGQLLVDIAC 564
+ SV+ G VD C
Sbjct: 204 -----EPSVVNRRGLDEVDAGC 220
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 111/213 (52%), Gaps = 23/213 (10%)
Query: 621 LESVVASWYDQGIIDN------LQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTS 674
L ++ W +G + L +K L IE SV R VD C SL +
Sbjct: 173 LRKLLRLWESEGTLSRPLHGVCLTAKKNLCIEP-------SVVNRRGLDEVDAGCRSLIA 225
Query: 675 SSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAI 734
+ C +++ D+ E P PG YS+ LK+ G +CPY+LAR+A+
Sbjct: 226 PWQTSQR--------CSYFDTLDSAEFELP--PGAYSVDDLKQFGETHHVCPYYLARKAL 275
Query: 735 IHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKA 794
A IVV+S+ Y++DP +A V + L +++VV DE HN+D+VC++++S+ I + +A
Sbjct: 276 KAADIVVHSFLYIVDPIVAEVTKEYLNENTIVVMDEGHNVDDVCIEAMSLIITKDDAVQA 335
Query: 795 VGNIQTLEGTLKEMKEADSAKLREEYARLVEGL 827
+++ L + +K + +L++EY RLV GL
Sbjct: 336 KESLKQLNRAVDYIKATNRQRLQDEYDRLVNGL 368
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+ KTDYG+M+ D+RFA +DKR KLP WIQ+ L +N TNLS + A+ +++ + ++MAQ
Sbjct: 764 VLRNKTDYGMMLLVDRRFALNDKRKKLPIWIQQCLKEN-TNLSVDAAIAIARGFFKEMAQ 822
Query: 909 PFTREDMLGVALLSLDQLLEK 929
P+ + LG+ L S + L K
Sbjct: 823 PWEHKRDLGITLYSTETLARK 843
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%)
Query: 596 YGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
Y LL +A VPDG+VCFFT Y Y+ V+ WY G + L + KL+F+ETQ
Sbjct: 617 YEDLLRGLAKTVPDGIVCFFTGYQYMSEVLLGWYKSGFLKELAQHKLIFVETQ 669
>gi|401423118|ref|XP_003876046.1| putative DNA excision repair protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492286|emb|CBZ27561.1| putative DNA excision repair protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 813
Score = 245 bits (626), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 131/418 (31%), Positives = 222/418 (53%), Gaps = 62/418 (14%)
Query: 10 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGL 69
VD C S+T+ ++ C +Y+ E P PGVYS+ LK+ G + +
Sbjct: 130 VDAGCRSITAPWQQEGR--------CGYYDTLVQAPLELP--PGVYSLDDLKDFGEQHHV 179
Query: 70 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 129
CPY+L R+A+ I+V+SY Y++DP ++ V + L +++VV DE HN+D+VC++++S+
Sbjct: 180 CPYYLVRKALPVVDIIVHSYLYMVDPVVSEVTKEFLNENTIVVMDEGHNVDDVCIEAMSL 239
Query: 130 RINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR--ETDVVLAN 187
+ ++ A N++ L L +K + +L++EY RLV GL A+ AR E ++
Sbjct: 240 ILTKKDSLDAKQNMKDLSKELDHLKATNRQQLQDEYDRLVNGLAMAEMARDLEQRALVET 299
Query: 188 PVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAP 247
P +P + + +P ++R A HF+ F++R +++ ++V T++ D
Sbjct: 300 PAIPANVAEGAIPASLRQANHFLAFMQRLVDF------THRIVARITRTYVAD------- 346
Query: 248 SMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLL 307
P TFL + + +E R+ +ERL LL
Sbjct: 347 ------------------------------PLTFLTKLKEECALEISHFRYLSERLKVLL 376
Query: 308 RTLEITNLTDFSSLVVITHLATLVSSY-------TKGFAIIVEPFSDKAPTVPNPVLYFC 360
TL++TN + + +I + TL+S Y GF ++ E F P +P+PV+
Sbjct: 377 TTLQVTNAGKYRPVALIAQMYTLLSMYYTDDRYEKPGFVVVCEAFDPTRPQIPDPVIRTV 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLA++ F R+++V++TSGTLSP+D+YPKIL F P I SF MTL+R C+ P++
Sbjct: 437 CVDASLALRDTFSRYRSVILTSGTLSPMDIYPKILGFTPAISKSFQMTLSRKCIAPVI 494
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 86/119 (72%), Gaps = 1/119 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L ++D+ V FPYEYIYPEQ Y+ ELK+ LD GH +LEMPSGTGKT SLLS++VAY+
Sbjct: 1 MKLYVEDVLVVFPYEYIYPEQLDYITELKRGLDKGGHMVLEMPSGTGKTISLLSILVAYL 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN-MTGLVLSSRKNLCIHS 541
+ H + K++YC+RTV E+ K + E+ +L ++ E++ + GL L+++KNLCI +
Sbjct: 61 HHHAYEKRKVVYCTRTVEEMVKTMGEMRKLLKHWEAEGEQLRPLRGLCLTAKKNLCIET 119
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 108/190 (56%), Gaps = 12/190 (6%)
Query: 665 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGL 724
VD C S+T+ ++ C +Y+ E P PGVYS+ LK+ G + +
Sbjct: 130 VDAGCRSITAPWQQEGR--------CGYYDTLVQAPLELP--PGVYSLDDLKDFGEQHHV 179
Query: 725 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 784
CPY+L R+A+ I+V+SY Y++DP ++ V + L +++VV DE HN+D+VC++++S+
Sbjct: 180 CPYYLVRKALPVVDIIVHSYLYMVDPVVSEVTKEFLNENTIVVMDEGHNVDDVCIEAMSL 239
Query: 785 RINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR--ETDVVLAN 842
+ ++ A N++ L L +K + +L++EY RLV GL A+ AR E ++
Sbjct: 240 ILTKKDSLDAKQNMKDLSKELDHLKATNRQQLQDEYDRLVNGLAMAEMARDLEQRALVET 299
Query: 843 PVLPDEILQG 852
P +P + +G
Sbjct: 300 PAIPANVAEG 309
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+ KTDYG+M+ DKRFA +DK K+P+WI + L +N TNLS + AV +++ + ++MAQ
Sbjct: 676 VLRNKTDYGMMLLVDKRFALNDKIKKIPRWIVQCLKNN-TNLSVDAAVAVARGFFKEMAQ 734
Query: 909 PFTREDMLGVALLSLDQL 926
P+ E LG LLS + L
Sbjct: 735 PWEHEKDLGTTLLSKETL 752
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 592 VIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
V Y LL+++A VPDG+VCFFT Y Y+ V+ +W+ G + L K KL+F+ETQ
Sbjct: 525 VTSAYESLLLELAKTVPDGMVCFFTGYQYMGEVLLTWHSSGFLQKLAKHKLIFVETQ 581
>gi|398016273|ref|XP_003861325.1| TFIIH basal transcription factor complex helicase subunit, putative
[Leishmania donovani]
gi|322499550|emb|CBZ34624.1| TFIIH basal transcription factor complex helicase subunit, putative
[Leishmania donovani]
Length = 813
Score = 242 bits (617), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 130/418 (31%), Positives = 220/418 (52%), Gaps = 62/418 (14%)
Query: 10 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGL 69
VD C S+T+ ++ C +Y+ E P PGVYS+ LK+ G + +
Sbjct: 130 VDAGCRSITAPWQQEGR--------CGYYDTLAQAPLELP--PGVYSLDDLKDFGEQHHV 179
Query: 70 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 129
CPY+L R+A+ I+V+SY Y++DP ++ V + L +++VV DE HN+D+VC++++S+
Sbjct: 180 CPYYLVRKALPVVDIIVHSYLYMVDPVVSEVTKEFLNENTIVVMDEGHNVDDVCIEAMSL 239
Query: 130 RINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR--ETDVVLAN 187
+ ++ A N++ L L +K + L++EY RLV GL + AR E ++
Sbjct: 240 ILTKKDSLDAKQNMKDLSKELDHLKATNRQMLQDEYDRLVNGLAMTEMARDPEQRALVEA 299
Query: 188 PVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAP 247
P +P + + +P ++R A HF+ F++R +++ ++V T++ D
Sbjct: 300 PAIPANVAEGAIPASLRQANHFLAFMQRLVDF------THRIVARITRTYVAD------- 346
Query: 248 SMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLL 307
P TFL + + +E R+ +ERL LL
Sbjct: 347 ------------------------------PLTFLTKLKEECALEISHFRYLSERLKVLL 376
Query: 308 RTLEITNLTDFSSLVVITHLATLVSSY-------TKGFAIIVEPFSDKAPTVPNPVLYFC 360
TL++TN + + +I + TL+S Y GF ++ E F P +P+PV+
Sbjct: 377 TTLQVTNAGKYRPVALIAQMYTLLSMYYTDDRYEKPGFVVVCEAFDPTRPQIPDPVIRTV 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLA++ F R+++V++TSGTLSP+D+YPKIL F P I SF MTL+R C+ P++
Sbjct: 437 CVDASLALRDTFARYRSVILTSGTLSPMDIYPKILGFTPAISKSFQMTLSRKCIAPVI 494
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 86/119 (72%), Gaps = 1/119 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L ++D+ V FPYEYIYPEQ Y+ ELK+ LD GH +LEMPSGTGKT SLLS++VAY+
Sbjct: 1 MKLYVEDVLVVFPYEYIYPEQLDYITELKRGLDKGGHMVLEMPSGTGKTISLLSILVAYL 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN-MTGLVLSSRKNLCIHS 541
+ H + K++YC+RTV E+ K + E+ +L ++ E++ + GL L+++KNLCI +
Sbjct: 61 HHHAHEKRKVVYCTRTVEEMVKTMGEMRKLLKHWEAEGEQLRPLRGLCLTAKKNLCIET 119
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 106/190 (55%), Gaps = 12/190 (6%)
Query: 665 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGL 724
VD C S+T+ ++ C +Y+ E P PGVYS+ LK+ G + +
Sbjct: 130 VDAGCRSITAPWQQEGR--------CGYYDTLAQAPLELP--PGVYSLDDLKDFGEQHHV 179
Query: 725 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 784
CPY+L R+A+ I+V+SY Y++DP ++ V + L +++VV DE HN+D+VC++++S+
Sbjct: 180 CPYYLVRKALPVVDIIVHSYLYMVDPVVSEVTKEFLNENTIVVMDEGHNVDDVCIEAMSL 239
Query: 785 RINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR--ETDVVLAN 842
+ ++ A N++ L L +K + L++EY RLV GL + AR E ++
Sbjct: 240 ILTKKDSLDAKQNMKDLSKELDHLKATNRQMLQDEYDRLVNGLAMTEMARDPEQRALVEA 299
Query: 843 PVLPDEILQG 852
P +P + +G
Sbjct: 300 PAIPANVAEG 309
Score = 79.3 bits (194), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+ KTDYG+M+ DKRFA +DK K+P+WI + L +N TNLS + AV +++ + ++MAQ
Sbjct: 676 VLRNKTDYGMMLLVDKRFALNDKVKKIPRWIVQCLKNN-TNLSVDAAVAVARGFFKEMAQ 734
Query: 909 PFTREDMLGVALLSLDQL 926
P+ E LG LLS + L
Sbjct: 735 PWEHEKDLGTTLLSKETL 752
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 592 VIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
V Y LL+++A VPDG+VCFFT Y Y+ V+ +W+ G + L K KL+F+ETQ
Sbjct: 525 VTSAYESLLLELAKTVPDGMVCFFTGYQYMGEVLLAWHSSGFLQKLAKHKLIFVETQ 581
>gi|154338549|ref|XP_001565499.1| putative TFIIH basal transcription factor complex helicase subunit
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|134062548|emb|CAM42411.1| putative TFIIH basal transcription factor complex helicase subunit
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 813
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/418 (31%), Positives = 221/418 (52%), Gaps = 62/418 (14%)
Query: 10 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGL 69
VD C S+T+ ++ C +Y+ E P PGVYS+ LK+ G + +
Sbjct: 130 VDAGCRSITAPWQQEGR--------CGYYDTLIQGPLELP--PGVYSLDDLKDFGEQHHV 179
Query: 70 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 129
CPY+L R+A+ I+V+SY Y++DP ++ V L +++VV DE HN+D+VC++++S+
Sbjct: 180 CPYYLVRKALPIVDIIVHSYLYMVDPVVSEVTKAFLNENTIVVMDEGHNVDDVCIEAMSL 239
Query: 130 RINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR--ETDVVLAN 187
+ ++ A N++ L L +K + +L++EY RLV GL A+ AR E V+
Sbjct: 240 ILTKKDSLDAKQNMKDLNKELDHLKATNRQQLQDEYDRLVNGLAMAEMARIPEERAVVVV 299
Query: 188 PVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAP 247
P +P + + +P ++R A HF+ F++R +++ ++V T++ D
Sbjct: 300 PAIPANVAEGAIPASLRQANHFLVFMQRLVDF------THRIVARITRTYVAD------- 346
Query: 248 SMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLL 307
P TFL + + +E R+ +ERL LL
Sbjct: 347 ------------------------------PLTFLTKLKEECALEISHFRYLSERLKVLL 376
Query: 308 RTLEITNLTDFSSLVVITHLATLVSSY-------TKGFAIIVEPFSDKAPTVPNPVLYFC 360
TL++TN + + +I + TL+S Y GF ++ E F P +P+PV+
Sbjct: 377 TTLQVTNTGKYRPVALIAQMYTLLSMYYTDDRYEKPGFVVVCEAFDPTRPQIPDPVIRTV 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLA++ F R+++V++TSGTLSP+D+YPKIL F P + SF MTL+R C+ P++
Sbjct: 437 CVDASLALRDTFGRYRSVILTSGTLSPMDIYPKILGFAPAVSKSFQMTLSRKCIAPVI 494
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 85/117 (72%), Gaps = 1/117 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L ++D+ V FPYEYIYPEQ Y+ ELK+ LD GH +LEMPSGTGKT SLLS++VAY+
Sbjct: 1 MKLYVEDVLVVFPYEYIYPEQLDYITELKRGLDKGGHMVLEMPSGTGKTISLLSILVAYL 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN-MTGLVLSSRKNLCI 539
+ H + K++YC+RTV E+ K + E+ +L ++ E++ + GL L+++KNLCI
Sbjct: 61 HHHAHEKRKVVYCTRTVEEMVKTMGEMRKLLKHWEAEGEQLRPLRGLCLTAKKNLCI 117
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 107/190 (56%), Gaps = 12/190 (6%)
Query: 665 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGL 724
VD C S+T+ ++ C +Y+ E P PGVYS+ LK+ G + +
Sbjct: 130 VDAGCRSITAPWQQEGR--------CGYYDTLIQGPLELP--PGVYSLDDLKDFGEQHHV 179
Query: 725 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 784
CPY+L R+A+ I+V+SY Y++DP ++ V L +++VV DE HN+D+VC++++S+
Sbjct: 180 CPYYLVRKALPIVDIIVHSYLYMVDPVVSEVTKAFLNENTIVVMDEGHNVDDVCIEAMSL 239
Query: 785 RINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR--ETDVVLAN 842
+ ++ A N++ L L +K + +L++EY RLV GL A+ AR E V+
Sbjct: 240 ILTKKDSLDAKQNMKDLNKELDHLKATNRQQLQDEYDRLVNGLAMAEMARIPEERAVVVV 299
Query: 843 PVLPDEILQG 852
P +P + +G
Sbjct: 300 PAIPANVAEG 309
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+ KTDYG+M+ DKRFA +DK +K+P+WI + L +N TNLS + AV +++ + ++MAQ
Sbjct: 676 VLRNKTDYGMMLLVDKRFALNDKCNKIPRWIVQCLKNN-TNLSVDAAVAVARGFFKEMAQ 734
Query: 909 PFTREDMLGVALLSLDQL 926
P+ E LG LLS + L
Sbjct: 735 PWEHEKDLGTTLLSKETL 752
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%)
Query: 592 VIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
V Y LL ++A VPDG+VCFFT Y Y+ V+ +W+ G + L K KL+F+ETQ
Sbjct: 525 VTSAYESLLFELAKTVPDGMVCFFTGYQYMGEVLLAWHSSGFLQKLAKHKLIFVETQ 581
>gi|19074270|ref|NP_585776.1| DNA REPAIR HELICASE OF THE RAD3/XPD SUBFAMILY [Encephalitozoon
cuniculi GB-M1]
gi|19068912|emb|CAD25380.1| DNA REPAIR HELICASE OF THE RAD3/XPD SUBFAMILY [Encephalitozoon
cuniculi GB-M1]
Length = 742
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 153/393 (38%), Positives = 207/393 (52%), Gaps = 73/393 (18%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
CDFYE A RE P+A VY +LKEMG + G+CPY+L R++I ++Y Y+YL+D
Sbjct: 143 CDFYENL-ADFREVPVA--VYDFLQLKEMGEKKGICPYYLVRRSIPVCDCIIYPYNYLID 199
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 154
P+I +VS EL +SVV+FDEAHNID+ C++ LS+ I R +E A I LE LK K
Sbjct: 200 PRICAIVSSELGPNSVVIFDEAHNIDSHCIEVLSIEIRRNVLEGASRAIGNLENLLKRGK 259
Query: 155 EADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ---------EVVPGNIRT 205
A ++ E RE L PV P+ I E +PGN+R
Sbjct: 260 PASGVDIQYE------------KVREK---LVGPV-PESIPYYYASGEGNYEFLPGNLRN 303
Query: 206 AEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLK 265
+ HFV LKR E+ KT+L+ + ES TE
Sbjct: 304 SFHFVSALKRITEFFKTKLKTTHLTTES--------------------------TE---- 333
Query: 266 TRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVIT 325
+F K I +E+K LRFC++RL L ++L + + D L +
Sbjct: 334 --------------SFCKSIRELSFVEKKALRFCSQRLGMLSQSLGLDD-EDMGHLKTVA 378
Query: 326 HLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTL 385
+T+VS Y+KGF +I EPF +A TV NP L CLDSS+AI PVF RF+ V+ITSGT+
Sbjct: 379 DFSTMVSMYSKGFVVIFEPFDSQASTVFNPTLRLACLDSSIAISPVFARFRNVIITSGTM 438
Query: 386 SPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
SP+DMYPKILNF P + TL R + P++
Sbjct: 439 SPIDMYPKILNFVPSRIAEIGATLDRNSISPLI 471
Score = 129 bits (324), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 97/147 (65%), Gaps = 22/147 (14%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + ID++ V+FPY +YPEQ YM E+K++LD KGHCL+EMPSGTGKT +LLS+ ++Y
Sbjct: 1 MKIHIDEVLVYFPYSSVYPEQLKYMREVKRSLDNKGHCLIEMPSGTGKTVALLSMTISYQ 60
Query: 484 ------NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNL 537
N H K++YCSRTVPE+EK ++EL R+ + YIK + I GL L+ RKNL
Sbjct: 61 LHMKSKNVH----FKVVYCSRTVPEVEKALKELDRVVE-YIKKHRPIEFLGLGLTGRKNL 115
Query: 538 CIHSEFETRDDISVIRNYGQLLVDIAC 564
CI+ + ++++ VD+AC
Sbjct: 116 CINK--------AALKSFN---VDVAC 131
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 84/133 (63%), Gaps = 3/133 (2%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
CDFYE A RE P+A VY +LKEMG + G+CPY+L R++I ++Y Y+YL+D
Sbjct: 143 CDFYENL-ADFREVPVA--VYDFLQLKEMGEKKGICPYYLVRRSIPVCDCIIYPYNYLID 199
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 809
P+I +VS EL +SVV+FDEAHNID+ C++ LS+ I R +E A I LE LK K
Sbjct: 200 PRICAIVSSELGPNSVVIFDEAHNIDSHCIEVLSIEIRRNVLEGASRAIGNLENLLKRGK 259
Query: 810 EADSAKLREEYAR 822
A ++ E R
Sbjct: 260 PASGVDIQYEKVR 272
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 83/160 (51%), Gaps = 5/160 (3%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L + F R D SV+RNYG L+V+++ VVPDG+VCFF SY+Y+E +V+ W + II+ + K
Sbjct: 499 LTTSFSLRSDPSVVRNYGHLMVELSKVVPDGIVCFFPSYMYMEEIVSLWAETSIINEISK 558
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK-FDA 698
KL+F+ET D ++ +GR L S + R K E + D Y +
Sbjct: 559 NKLVFVETPDGRETELALANYKRACDNGRGGMLFSVA---RGKVSEGVDFEDGYGRCVVM 615
Query: 699 VGREAPLAPGVYSITKLKEMGRELGLCPY-FLARQAIIHA 737
+G V +L + E G+ Y FL A+ HA
Sbjct: 616 LGVPFQYTESVRLKKRLDFLREEYGIKEYDFLTFDAMRHA 655
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 47/63 (74%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+ K DYG+MI AD+RF R+DK+SKLPKWI+ + +NLS + A+ +++R+ R+MAQ
Sbjct: 662 VLRNKNDYGLMILADERFERNDKKSKLPKWIRNCIDGGNSNLSVDMALSIARRFFREMAQ 721
Query: 909 PFT 911
T
Sbjct: 722 ECT 724
>gi|449330281|gb|AGE96540.1| DNA repair helicase [Encephalitozoon cuniculi]
Length = 742
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 151/389 (38%), Positives = 205/389 (52%), Gaps = 65/389 (16%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
CDFYE A RE P+A VY +LKEMG + G+CPY+L R++I ++Y Y+YL+D
Sbjct: 143 CDFYENL-ADFREVPVA--VYDFLQLKEMGEKKGICPYYLVRRSIPVCDCIIYPYNYLID 199
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 154
P+I +VS EL +SVV+FDEAHNID+ C++ LS+ I R +E A I LE LK K
Sbjct: 200 PRICAIVSSELGPNSVVIFDEAHNIDSHCIEVLSIEIRRNVLEGASRAIGNLENLLKRGK 259
Query: 155 EADSAKLREEYARLVEGLRDAQSARETDVVLANPVLP-----DEILQEVVPGNIRTAEHF 209
A ++ E RE V +P E E +PGN+R + HF
Sbjct: 260 PASGVDIQYE------------KVREKLVGPVPESIPYYYASGEGNYEFLPGNLRNSFHF 307
Query: 210 VGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLR 269
V LKR E+ KT+L+ + ES TE
Sbjct: 308 VSALKRITEFFKTKLKTTHLTTES--------------------------TE-------- 333
Query: 270 VQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLAT 329
+F K I +E+K LRFC++RL L ++L + + D L + +T
Sbjct: 334 ----------SFCKSIRELSFVEKKALRFCSQRLGMLSQSLGLDD-EDMGHLKTVADFST 382
Query: 330 LVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLD 389
+VS Y+KGF +I EPF +A TV NP L CLDSS+AI PVF RF+ V+ITSGT+SP+D
Sbjct: 383 MVSMYSKGFVVIFEPFDSQASTVFNPTLRLACLDSSIAISPVFARFRNVIITSGTMSPID 442
Query: 390 MYPKILNFQPVIMHSFSMTLARPCLLPMV 418
MYPKILNF P + TL R + P++
Sbjct: 443 MYPKILNFVPSRIAEIGATLDRNSISPLI 471
Score = 129 bits (324), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 97/147 (65%), Gaps = 22/147 (14%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + ID++ V+FPY +YPEQ YM E+K++LD KGHCL+EMPSGTGKT +LLS+ ++Y
Sbjct: 1 MKIHIDEVLVYFPYSSVYPEQLKYMREVKRSLDNKGHCLIEMPSGTGKTVALLSMTISYQ 60
Query: 484 ------NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNL 537
N H K++YCSRTVPE+EK ++EL R+ + YIK + I GL L+ RKNL
Sbjct: 61 LHMKSKNVH----FKVVYCSRTVPEVEKALKELDRVVE-YIKKHRPIEFLGLGLTGRKNL 115
Query: 538 CIHSEFETRDDISVIRNYGQLLVDIAC 564
CI+ + ++++ VD+AC
Sbjct: 116 CINK--------AALKSFN---VDVAC 131
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 84/133 (63%), Gaps = 3/133 (2%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
CDFYE A RE P+A VY +LKEMG + G+CPY+L R++I ++Y Y+YL+D
Sbjct: 143 CDFYENL-ADFREVPVA--VYDFLQLKEMGEKKGICPYYLVRRSIPVCDCIIYPYNYLID 199
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 809
P+I +VS EL +SVV+FDEAHNID+ C++ LS+ I R +E A I LE LK K
Sbjct: 200 PRICAIVSSELGPNSVVIFDEAHNIDSHCIEVLSIEIRRNVLEGASRAIGNLENLLKRGK 259
Query: 810 EADSAKLREEYAR 822
A ++ E R
Sbjct: 260 PASGVDIQYEKVR 272
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L + F R D SV+RNYG L+V+++ VVPDG+VCFF SY+Y+E +V+ W + II+ + K
Sbjct: 499 LTTSFSLRSDPSVVRNYGHLMVELSKVVPDGIVCFFPSYMYMEEIVSLWAETSIINEISK 558
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KL+F+ET D ++ +GR L S + R K E + D Y +
Sbjct: 559 NKLVFVETPDGRETELALANYKRACDNGRGGMLFSVA---RGKVSEGVDFEDGYGR 611
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 47/63 (74%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+ K DYG+MI AD+RF R+DK+SKLPKWI+ + +NLS + A+ +++R+ R+MAQ
Sbjct: 662 VLRNKNDYGLMILADERFERNDKKSKLPKWIRNCIDGGNSNLSVDMALSIARRFFREMAQ 721
Query: 909 PFT 911
T
Sbjct: 722 ECT 724
>gi|396081490|gb|AFN83106.1| Rad3/XPD DNA repair helicase [Encephalitozoon romaleae SJ-2008]
Length = 743
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 144/386 (37%), Positives = 213/386 (55%), Gaps = 58/386 (15%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
CDFYE + E P+A VY ++LKE+G + G+CPY+L R++I ++Y Y+YL+D
Sbjct: 143 CDFYENLNNFN-EVPVA--VYDFSRLKEIGEKKGICPYYLVRRSIPVCDCIIYPYNYLID 199
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 154
P+I ++VSKEL +SVV+FDEAHNID+ C++ LS+ I R +E A I+ LE L++ K
Sbjct: 200 PRIYSIVSKELGPNSVVIFDEAHNIDSHCIEVLSIEIKRNILEGATRAIKNLENLLRQ-K 258
Query: 155 EADSAKLREEYARLVEGLRDAQSARETDVVLANPVL--PDEILQEVVPGNIRTAEHFVGF 212
+ + +Y ++ E +R+ V + P E E +PGN+R + HF+
Sbjct: 259 GPTTGEESAQYEKMKEKIREP-------VADSIPYFYATGEGSYEFIPGNLRNSYHFISA 311
Query: 213 LKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQ 272
LKR E+ KT+L+ + ES +F K I
Sbjct: 312 LKRITEFFKTKLKTTHLTTESTESFCKSI------------------------------- 340
Query: 273 VVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVS 332
K++S I +K LRFC++RL L ++L + + D + L + +T+VS
Sbjct: 341 ----------KELSF---IGKKALRFCSQRLGMLSQSLGLDD-EDMTHLKTVADFSTMVS 386
Query: 333 SYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYP 392
Y+KGF +I EPF +A TV NP L CLDSS+A+ VF RF+ V+ITSGT+SP+DMYP
Sbjct: 387 MYSKGFVVIFEPFDSQASTVFNPTLRLACLDSSIAMSSVFARFRNVIITSGTMSPIDMYP 446
Query: 393 KILNFQPVIMHSFSMTLARPCLLPMV 418
KILNF P TL R + P++
Sbjct: 447 KILNFVPSRTAEIGATLERNSISPLI 472
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 86/120 (71%), Gaps = 5/120 (4%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY- 482
M + ID++ V+FPY+ +YPEQ YM E+K++LD +GHCLLEMPSGTGKT +LLS+ ++Y
Sbjct: 1 MKIQIDEVLVYFPYDSVYPEQLKYMREIKRSLDNRGHCLLEMPSGTGKTVALLSMTISYQ 60
Query: 483 --MNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIH 540
M A D K++YCSRTVPE+EK + EL + YIK + I GL L+ RKNLCI+
Sbjct: 61 LHMKAKN-DHFKIVYCSRTVPEVEKALRELDGVVS-YIKKHRPIEFLGLGLTGRKNLCIN 118
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 93/140 (66%), Gaps = 4/140 (2%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
CDFYE + E P+A VY ++LKE+G + G+CPY+L R++I ++Y Y+YL+D
Sbjct: 143 CDFYENLNNFN-EVPVA--VYDFSRLKEIGEKKGICPYYLVRRSIPVCDCIIYPYNYLID 199
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 809
P+I ++VSKEL +SVV+FDEAHNID+ C++ LS+ I R +E A I+ LE L++ K
Sbjct: 200 PRIYSIVSKELGPNSVVIFDEAHNIDSHCIEVLSIEIKRNILEGATRAIKNLENLLRQ-K 258
Query: 810 EADSAKLREEYARLVEGLRD 829
+ + +Y ++ E +R+
Sbjct: 259 GPTTGEESAQYEKMKEKIRE 278
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 5/160 (3%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L + F R D SV+RNYG L+++++ VVPDG+VCFF SY+Y+E +V+ W + II+ + K
Sbjct: 500 LTTSFSLRSDPSVVRNYGHLMIELSRVVPDGIVCFFPSYMYMEEIVSLWAETNIINEINK 559
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK-FDA 698
KL+F+ET D ++ +GR L S + R K E + D Y +
Sbjct: 560 NKLVFVETPDGRETEMALSNYRRACDNGRGGMLFSVA---RGKVSEGVDFEDGYGRCVVM 616
Query: 699 VGREAPLAPGVYSITKLKEMGRELGLCPY-FLARQAIIHA 737
+G V +L + E G+ Y FL A+ HA
Sbjct: 617 LGVPFQYTESVRLRKRLDFLREEYGIKEYDFLTFDAMRHA 656
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+ K DYG+MI AD+RF R+DK+ KLPKWIQ + NLS + A+ +++R+ R+MAQ
Sbjct: 663 VLRNKNDYGLMILADERFERNDKKGKLPKWIQNCIDGGNCNLSVDMALSIARRFFREMAQ 722
>gi|146088245|ref|XP_001466027.1| TFIIH basal transcription factor complex helicase subunit
[Leishmania infantum JPCM5]
gi|134070128|emb|CAM68462.1| TFIIH basal transcription factor complex helicase subunit
[Leishmania infantum JPCM5]
Length = 813
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/418 (30%), Positives = 220/418 (52%), Gaps = 62/418 (14%)
Query: 10 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGL 69
VD C S+T+ ++ C +++ E P PGVYS+ LK+ G + +
Sbjct: 130 VDAGCRSITAPWQQEGR--------CGYFDTLAQAPLELP--PGVYSLDDLKDFGEQHHV 179
Query: 70 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 129
CPY+L R+A+ I+V+SY Y++DP ++ V + L +++VV DE HN+D+VC++++S+
Sbjct: 180 CPYYLVRKALPVVDIIVHSYLYMVDPVVSEVTKEFLNENTIVVMDEGHNVDDVCIEAMSL 239
Query: 130 RINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR--ETDVVLAN 187
+ ++ A N++ L L +K + L++EY RLV GL + AR E ++
Sbjct: 240 ILTKKDSLDAKQNMKDLSKELDHLKATNRQMLQDEYDRLVNGLAMTEMARDPEQRALVEA 299
Query: 188 PVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAP 247
P +P + + +P ++R A HF+ F++R +++ ++V T++ D
Sbjct: 300 PAIPANVAEGAIPASLRQANHFLAFMQRLVDF------THRIVARITRTYVAD------- 346
Query: 248 SMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLL 307
P TFL + + +E R+ +ERL LL
Sbjct: 347 ------------------------------PLTFLTKLKEECALEISHFRYLSERLKVLL 376
Query: 308 RTLEITNLTDFSSLVVITHLATLVSSY-------TKGFAIIVEPFSDKAPTVPNPVLYFC 360
TL++TN + + +I + TL+S Y GF ++ E F P +P+PV+
Sbjct: 377 TTLQVTNAGKYRPVALIAQMYTLLSMYYTDDRYEKPGFVVVCEAFDPTRPQIPDPVIRTV 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLA++ F R+++V++TSGTLSP+D+YPKIL F P I SF MTL+R C+ P++
Sbjct: 437 CVDASLALRDTFARYRSVILTSGTLSPMDIYPKILGFTPAISKSFQMTLSRKCIAPVI 494
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 86/119 (72%), Gaps = 1/119 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L ++D+ V FPYEYIYPEQ Y+ ELK+ LD GH +LEMPSGTGKT SLLS++VAY+
Sbjct: 1 MKLYVEDVLVVFPYEYIYPEQLDYITELKRGLDKGGHMVLEMPSGTGKTISLLSILVAYL 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN-MTGLVLSSRKNLCIHS 541
+ H + K++YC+RTV E+ K + E+ +L ++ E++ + GL L+++KNLCI +
Sbjct: 61 HHHAHEKRKVVYCTRTVEEMVKTMGEMRKLLKHWEAEGEQLRPLRGLCLTAKKNLCIET 119
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 106/190 (55%), Gaps = 12/190 (6%)
Query: 665 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGL 724
VD C S+T+ ++ C +++ E P PGVYS+ LK+ G + +
Sbjct: 130 VDAGCRSITAPWQQEGR--------CGYFDTLAQAPLELP--PGVYSLDDLKDFGEQHHV 179
Query: 725 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 784
CPY+L R+A+ I+V+SY Y++DP ++ V + L +++VV DE HN+D+VC++++S+
Sbjct: 180 CPYYLVRKALPVVDIIVHSYLYMVDPVVSEVTKEFLNENTIVVMDEGHNVDDVCIEAMSL 239
Query: 785 RINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR--ETDVVLAN 842
+ ++ A N++ L L +K + L++EY RLV GL + AR E ++
Sbjct: 240 ILTKKDSLDAKQNMKDLSKELDHLKATNRQMLQDEYDRLVNGLAMTEMARDPEQRALVEA 299
Query: 843 PVLPDEILQG 852
P +P + +G
Sbjct: 300 PAIPANVAEG 309
Score = 79.3 bits (194), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+ KTDYG+M+ DKRFA +DK K+P+WI + L +N TNLS + AV +++ + ++MAQ
Sbjct: 676 VLRNKTDYGMMLLVDKRFALNDKVKKIPRWIVQCLKNN-TNLSVDAAVAVARGFFKEMAQ 734
Query: 909 PFTREDMLGVALLSLDQL 926
P+ E LG LLS + L
Sbjct: 735 PWEHEKDLGTTLLSKETL 752
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 592 VIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
V Y LL+++A VPDG+VCFFT Y Y+ V+ +W+ G + L K KL+F+ETQ
Sbjct: 525 VTSAYESLLLELAKTVPDGMVCFFTGYQYMGEVLLAWHSSGFLQKLAKHKLIFVETQ 581
>gi|157870391|ref|XP_001683746.1| putative DNA excision repair protein [Leishmania major strain
Friedlin]
gi|68126812|emb|CAJ05417.1| putative DNA excision repair protein [Leishmania major strain
Friedlin]
Length = 813
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/418 (31%), Positives = 220/418 (52%), Gaps = 62/418 (14%)
Query: 10 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGL 69
VD C S+T+ ++R C +Y+ E P PGV+S+ LK+ G + +
Sbjct: 130 VDAGCRSITAPWQQERR--------CGYYDTLAQAPLELP--PGVHSLDDLKDFGEQHHV 179
Query: 70 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 129
CPY+L R+A+ I+V+SY Y++DP ++ V + L +++VV DE HN+D+VC++++S+
Sbjct: 180 CPYYLVRKALPIVDIIVHSYLYMVDPVVSEVTKEFLNENTIVVMDEGHNVDDVCIEAMSL 239
Query: 130 RINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR--ETDVVLAN 187
+ ++ A N++ L L +K + +L+ EY RLV GL A+ AR E ++
Sbjct: 240 ILTKKDSLDAKENMKDLNKELDHLKATNRQQLQNEYDRLVNGLAMAEMARDPEQRALVEA 299
Query: 188 PVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAP 247
P +P + + +P ++R A HF+ F++R +++ ++V T++ D
Sbjct: 300 PAIPANVAEGAIPASLRQANHFLAFMQRLVDF------THRIVARITRTYVAD------- 346
Query: 248 SMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLL 307
P TFL + + +E R+ + RL LL
Sbjct: 347 ------------------------------PLTFLTKLKEECALEISHFRYLSGRLKVLL 376
Query: 308 RTLEITNLTDFSSLVVITHLATLVS-SYTK------GFAIIVEPFSDKAPTVPNPVLYFC 360
TL+I N + + +I + TL+S YT GF ++ E F P +P+PV+
Sbjct: 377 TTLQIANAGKYRPVALIAQMYTLLSMHYTDDRYEKPGFVVVCEAFDPTRPQIPDPVIRTV 436
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
C+D+SLA++ F R ++V++TSGTLSP+D+YPKIL F P I SF MTL+R C+ P++
Sbjct: 437 CVDASLALRDTFARHRSVILTSGTLSPMDIYPKILGFTPAISKSFQMTLSRKCIAPVI 494
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 88/124 (70%), Gaps = 1/124 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L ++D+ V FPYEYIYPEQ Y+ ELK+ LD GH +LEMPSGTGKT SLLS++VAY+
Sbjct: 1 MKLYVEDVLVVFPYEYIYPEQLDYITELKRGLDKGGHMVLEMPSGTGKTISLLSILVAYL 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN-MTGLVLSSRKNLCIHSE 542
+ H + K++YC+RTV E+ K + E+ +L ++ E++ + GL LS++KNLCI +
Sbjct: 61 HHHAHEKRKVVYCTRTVEEMVKTMGEMRKLLKHWEAEGEQLRPLRGLCLSAKKNLCIETS 120
Query: 543 FETR 546
+R
Sbjct: 121 VASR 124
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 118/218 (54%), Gaps = 19/218 (8%)
Query: 637 LQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKF 696
L +K L IET SV+ VD C S+T+ ++R C +Y+
Sbjct: 109 LSAKKNLCIET-------SVASRIHPDEVDAGCRSITAPWQQERR--------CGYYDTL 153
Query: 697 DAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVV 756
E P PGV+S+ LK+ G + +CPY+L R+A+ I+V+SY Y++DP ++ V
Sbjct: 154 AQAPLELP--PGVHSLDDLKDFGEQHHVCPYYLVRKALPIVDIIVHSYLYMVDPVVSEVT 211
Query: 757 SKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKL 816
+ L +++VV DE HN+D+VC++++S+ + ++ A N++ L L +K + +L
Sbjct: 212 KEFLNENTIVVMDEGHNVDDVCIEAMSLILTKKDSLDAKENMKDLNKELDHLKATNRQQL 271
Query: 817 REEYARLVEGLRDAQSAR--ETDVVLANPVLPDEILQG 852
+ EY RLV GL A+ AR E ++ P +P + +G
Sbjct: 272 QNEYDRLVNGLAMAEMARDPEQRALVEAPAIPANVAEG 309
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+ KTDYG+M+ DKRFA +DK K+P+WI + L +N TNLS + AV +++ + ++MAQ
Sbjct: 676 VLRNKTDYGMMLLVDKRFALNDKVKKIPRWIAQCLKNN-TNLSVDAAVAVARGFFKEMAQ 734
Query: 909 PFTREDMLGVALLSLDQL 926
P+ E LG LLS + L
Sbjct: 735 PWEHEKDLGTTLLSKETL 752
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 592 VIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
V Y LL+++A VPDG+VCFFT Y Y+ V+ +W+ G + L K KL+F+ETQ
Sbjct: 525 VTSAYESLLLELAKTVPDGMVCFFTGYQYMGEVLLAWHSSGFLQKLAKHKLIFVETQ 581
>gi|401826548|ref|XP_003887367.1| Rad3-like DNA repair helicase [Encephalitozoon hellem ATCC 50504]
gi|395459885|gb|AFM98386.1| Rad3-like DNA repair helicase [Encephalitozoon hellem ATCC 50504]
Length = 742
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 145/386 (37%), Positives = 208/386 (53%), Gaps = 59/386 (15%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
CDFYE ++ E P+A VY ++LKEMG + G+CPY+L R++I ++Y Y+YL+D
Sbjct: 143 CDFYENLNSFN-EVPVA--VYDFSQLKEMGEKKGICPYYLVRRSIPVCDCIIYPYNYLID 199
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 154
P+I +VSKEL SVV+FDEAHNID+ C++ LS+ I R +E A I+ LE LK+
Sbjct: 200 PRIYAIVSKELGPDSVVIFDEAHNIDSHCIEVLSIEIKRNILEGATRAIKNLECLLKQRG 259
Query: 155 EADSAKLREEYARLVEGLRDAQSARETDVVLANPVL--PDEILQEVVPGNIRTAEHFVGF 212
A E + L E +++ D + P E E +PGN+R + HF+
Sbjct: 260 PAG------EESMLYEKMKEKVGEPVADSI---PYFYATGEGNYEFIPGNLRNSFHFISA 310
Query: 213 LKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQ 272
LKR E+ KT+L+ + ES +F K I
Sbjct: 311 LKRITEFFKTKLKTTHLTTESTESFCKSI------------------------------- 339
Query: 273 VVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVS 332
K++S +E+K LRFC++RL L ++L + + D L + +T+VS
Sbjct: 340 ----------KELSF---VEKKALRFCSQRLGMLSQSLGVDD-EDMGHLKTVADFSTMVS 385
Query: 333 SYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYP 392
Y+KGF +I EPF +A TV NP L CLDSS+A+ VF RF+ V+ITSGT+SP+DMYP
Sbjct: 386 MYSKGFVVIFEPFDSQASTVFNPTLRLACLDSSIAMSSVFGRFRNVIITSGTMSPIDMYP 445
Query: 393 KILNFQPVIMHSFSMTLARPCLLPMV 418
KILNF TL R + P++
Sbjct: 446 KILNFVSSRTVEIGATLDRNSISPLI 471
Score = 129 bits (324), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 88/123 (71%), Gaps = 11/123 (8%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + ID++ V+FPY+ +YPEQ YM E+K++LD KGHCL+EMPSGTGKT +LLS+ ++Y
Sbjct: 1 MKIQIDEVLVYFPYDSVYPEQLKYMREIKRSLDNKGHCLIEMPSGTGKTVALLSMTISYQ 60
Query: 484 ------NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNL 537
NAH K++YCSRTV E+EK ++EL R+ + YIK + I GL L+ RKNL
Sbjct: 61 LYMKAKNAH----FKIVYCSRTVQEVEKALKELDRVVE-YIKKHRPIEFLGLGLTGRKNL 115
Query: 538 CIH 540
CI+
Sbjct: 116 CIN 118
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 81/118 (68%), Gaps = 3/118 (2%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
CDFYE ++ E P+A VY ++LKEMG + G+CPY+L R++I ++Y Y+YL+D
Sbjct: 143 CDFYENLNSFN-EVPVA--VYDFSQLKEMGEKKGICPYYLVRRSIPVCDCIIYPYNYLID 199
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE 807
P+I +VSKEL SVV+FDEAHNID+ C++ LS+ I R +E A I+ LE LK+
Sbjct: 200 PRIYAIVSKELGPDSVVIFDEAHNIDSHCIEVLSIEIKRNILEGATRAIKNLECLLKQ 257
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 83/160 (51%), Gaps = 5/160 (3%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L + F R D SV+RNYG L+V+++ VVPDG+VCFF SY+Y+E +V+ W + II+ + K
Sbjct: 499 LTTSFSLRSDPSVVRNYGHLMVELSKVVPDGIVCFFPSYMYMEEIVSLWAETNIINEISK 558
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK-FDA 698
KL+F+ET D ++ +GR L S + R K E + D Y +
Sbjct: 559 NKLVFVETPDGRETEIALSNYKRACDNGRGGMLFSVA---RGKVSEGVDFEDGYGRCVVM 615
Query: 699 VGREAPLAPGVYSITKLKEMGRELGLCPY-FLARQAIIHA 737
+G V +L + E G+ Y FL A+ HA
Sbjct: 616 LGVPFQYTESVRLKKRLDFLREEYGIKEYDFLTFDAMRHA 655
Score = 76.3 bits (186), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+ K DYG+MI AD+RF R+DK+SKLPKWIQ + NLS + A+ +++R+ R+MAQ
Sbjct: 662 VLRNKNDYGLMILADERFERNDKKSKLPKWIQNCIDGGNCNLSVDMALSIARRFFREMAQ 721
Query: 909 PFTREDMLGVALLS 922
T G +LLS
Sbjct: 722 ECTGA---GNSLLS 732
>gi|296086736|emb|CBI32371.3| unnamed protein product [Vitis vinifera]
Length = 922
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 123/281 (43%), Positives = 166/281 (59%), Gaps = 49/281 (17%)
Query: 153 MKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGF 212
K D+ +LR EY RLVEGL + +D LANP LPD+IL+E VPGNIR AEHF+
Sbjct: 437 FKATDAGRLRAEYNRLVEGLAQRGNLPISDTWLANPALPDDILKEAVPGNIRRAEHFLSV 496
Query: 213 LKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQ 272
L+R ++YL RL +
Sbjct: 497 LRRLVQYLHG--------------------------------------------RLETEN 512
Query: 273 VVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVS 332
V +E P F+ I+S+ I++K L+FC +RL SL+ TLEIT+ +F + I ATLV
Sbjct: 513 VEKEGPVAFVASINSQAGIDQKMLKFCYDRLHSLMLTLEITDTDEFLHIQTICDFATLVG 572
Query: 333 SYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYP 392
+YT+GF+II+EPF ++ P +P+PVL C D+SLAIKPVF+RFQ+VVITSGTLSP+D+YP
Sbjct: 573 TYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYP 632
Query: 393 KILNFQPVIMHSFSMTLARPCLLPMVRENYAMGLMIDDLPV 433
++LNF PV+ SF+M+L R C+ PMV + D LPV
Sbjct: 633 RLLNFNPVVSRSFTMSLTRNCICPMVLTRGS-----DQLPV 668
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 85/116 (73%)
Query: 31 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 90
NIP C F+E ++ EA L PGVY++ L+ GR+ G CPYFLAR + A +VVYSY
Sbjct: 124 NIPTCQFFENYEKAASEAVLPPGVYTLQDLRAFGRDKGWCPYFLARHMVQFANVVVYSYQ 183
Query: 91 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 146
YLLDPK+A ++SKE+ R SVVVFDEAHNIDNVC+++LSV + R+T+E A N+ +
Sbjct: 184 YLLDPKVAGIISKEMQRESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSKM 239
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 85/116 (73%)
Query: 686 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 745
NIP C F+E ++ EA L PGVY++ L+ GR+ G CPYFLAR + A +VVYSY
Sbjct: 124 NIPTCQFFENYEKAASEAVLPPGVYTLQDLRAFGRDKGWCPYFLARHMVQFANVVVYSYQ 183
Query: 746 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 801
YLLDPK+A ++SKE+ R SVVVFDEAHNIDNVC+++LSV + R+T+E A N+ +
Sbjct: 184 YLLDPKVAGIISKEMQRESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSKM 239
Score = 139 bits (351), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/118 (58%), Positives = 87/118 (73%), Gaps = 1/118 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M I+D+ V+FPY+ IYPEQY+YMVELK+ALDAKGH LLEMP+GTGKT +LLSLI +Y
Sbjct: 1 MKFQIEDVTVYFPYDNIYPEQYSYMVELKRALDAKGHALLEMPTGTGKTIALLSLITSYA 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIH 540
+ P + KLLYC+RTV E+EK + EL L Y ++H + L LSSRKNLCI+
Sbjct: 61 LSKPSNPIKLLYCTRTVHEMEKTLAELRLLHQYQLRHLGPAARILALGLSSRKNLCIN 118
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ + L + + F+ R D V+RNYG+LL+++ VVPDG+VCFF SY Y++
Sbjct: 653 CICP-MVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMVSVVPDGIVCFFVSYSYMDG 711
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+V +W + GI+ + + KL+FIETQD +++
Sbjct: 712 IVNTWNESGILKEIMQHKLVFIETQDVVET 741
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 58/81 (71%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+MIFADKR++R DKRSKLP WI +L D NLST+ A+ +++ +LR+MAQ
Sbjct: 831 VIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREFLRKMAQ 890
Query: 909 PFTREDMLGVALLSLDQLLEK 929
P+ + + G L ++ LEK
Sbjct: 891 PYDKAGVSGRKTLLSEEDLEK 911
Score = 46.6 bits (109), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 808 MKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
K D+ +LR EY RLVEGL + +D LANP LPD+IL+
Sbjct: 437 FKATDAGRLRAEYNRLVEGLAQRGNLPISDTWLANPALPDDILK 480
>gi|429963255|gb|ELA42799.1| DNA repair helicase (rad3) [Vittaforma corneae ATCC 50505]
Length = 747
Score = 236 bits (602), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 133/384 (34%), Positives = 209/384 (54%), Gaps = 58/384 (15%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
CDFYE + + GVY T++KE+G ++G+CPYF R + ++Y Y+YL++
Sbjct: 143 CDFYE-----NKATSIPYGVYDFTEIKELGAKMGVCPYFFVRNHLPLFDCIIYPYNYLIE 197
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 154
P I +++SKEL + S VVFDEAHNID+ C+++LS+ I+R T+E A + +E +K K
Sbjct: 198 PSIFSIISKELPKDSFVVFDEAHNIDSHCIEALSIEISRNTLEAASRIMSVIESKIKSKK 257
Query: 155 EADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLK 214
+ +LR+EY + + + + T N P E+ PGN+R A HFV +K
Sbjct: 258 QEIDRRLRKEYELMFKTME--YTGENTIPHFFNTNKP-----ELAPGNLRNASHFVSVMK 310
Query: 215 RFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVV 274
R IE+LKT+L+ + ES +F++ I
Sbjct: 311 RLIEFLKTKLKTTHLTVESIKSFIQSIKE------------------------------- 339
Query: 275 QESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSY 334
TF I++K L F ++R+ ++++L + + + L+ I + T++S Y
Sbjct: 340 ----LTF---------IDKKTLSFVSQRMGIMVQSLGVED-DELYKLLSIANFGTMLSIY 385
Query: 335 TKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKI 394
+KGF++I EP+ D V NPVL CLD+S+A+ VF F+ V+ITSGTLSP++MYPKI
Sbjct: 386 SKGFSVIFEPY-DTMSGVFNPVLRLSCLDASIAMSHVFKNFRNVIITSGTLSPIEMYPKI 444
Query: 395 LNFQPVIMHSFSMTLARPCLLPMV 418
LNF P + +TL R P++
Sbjct: 445 LNFVPSSIVEIGITLCRNSTSPLI 468
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 85/131 (64%), Gaps = 5/131 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
CDFYE + + GVY T++KE+G ++G+CPYF R + ++Y Y+YL++
Sbjct: 143 CDFYE-----NKATSIPYGVYDFTEIKELGAKMGVCPYFFVRNHLPLFDCIIYPYNYLIE 197
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 809
P I +++SKEL + S VVFDEAHNID+ C+++LS+ I+R T+E A + +E +K K
Sbjct: 198 PSIFSIISKELPKDSFVVFDEAHNIDSHCIEALSIEISRNTLEAASRIMSVIESKIKSKK 257
Query: 810 EADSAKLREEY 820
+ +LR+EY
Sbjct: 258 QEIDRRLRKEY 268
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 82/122 (67%), Gaps = 5/122 (4%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY- 482
M +ID +P++FPYE IYPEQ Y+ L K++ GH L+EMPSGTGKT +LLS V+Y
Sbjct: 1 MRFLIDGVPIYFPYEKIYPEQLKYIKSLLKSIQTPGHVLIEMPSGTGKTVALLSCTVSYQ 60
Query: 483 --MNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIH 540
M A + K++YCSRT+PEI+K ++EL L + YIK + + G+ LS R N+CI+
Sbjct: 61 LHMKAKGVPF-KIVYCSRTLPEIDKALKELRSLVE-YIKKHVSFDFLGVGLSKRGNMCIN 118
Query: 541 SE 542
E
Sbjct: 119 KE 120
Score = 76.3 bits (186), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 17/162 (10%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
F R D SV+RNYG L+ ++ +VPD +V FF SY+Y+E V+ W + +++ + + KL+
Sbjct: 507 FALRADPSVVRNYGNLITSLSKIVPDNIVVFFPSYIYMEEVITLWSESNVMEEILQSKLV 566
Query: 644 FIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREA 703
FIET D ++ + + GR L S + R K E + DF + GR
Sbjct: 567 FIETPDFRETETALRNYRKACDMGRGAVLFSVA---RGKVSEGV---DFEHGY---GRAV 617
Query: 704 PL--APGVYSIT-----KLKEMGRELGLCPY-FLARQAIIHA 737
+ P +Y+ + +LK M +E G+ Y FL A+ HA
Sbjct: 618 VMLGVPFMYTESVRLKERLKYMRQEHGIKEYEFLVFDAMRHA 659
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+ KTDYG+MI AD+RF K SK+PKWIQE + LS + A+ ++K + ++MAQ
Sbjct: 666 VLRNKTDYGLMIMADQRFGAQSKISKMPKWIQERIEKGNCGLSIDMALSIAKMFYKEMAQ 725
Query: 909 PFTREDMLGVALL 921
P + + GVALL
Sbjct: 726 PVSGD---GVALL 735
>gi|84999674|ref|XP_954558.1| rad3-like DNA helicase-related [Theileria annulata]
gi|65305556|emb|CAI73881.1| rad3-like DNA helicase-related, putative [Theileria annulata]
Length = 894
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 147/415 (35%), Positives = 224/415 (53%), Gaps = 76/415 (18%)
Query: 30 ENIPVCDFYEKFDAVGREAPLAPGVYSITKLKE---------MGRELGLCPYFLARQAII 80
++ +C +YE + + + GVY++ LKE GR +CPYF AR+AI
Sbjct: 267 NSMGLCGYYETIERIWNPTFMPSGVYTLEGLKEYCLNFKDPRTGRPSPICPYFAARRAID 326
Query: 81 HAKIVVYSYHYLLDPKIANVVSKELARSS-----------------VVVFDEAHNIDNVC 123
A IVV +Y YL+DPK+++ V L S VVVFDEAHNIDNVC
Sbjct: 327 DANIVVLNYQYLIDPKVSDAVFYHLCTESYLKEKRDDKDSKPKLPIVVVFDEAHNIDNVC 386
Query: 124 VDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDV 183
+++LSV ++ T++ A ++ LE +++E++ D L EEY RLVE + E
Sbjct: 387 IEALSVELSTETLDNAYSDLSRLENSVRELRLRDEELLLEEYRRLVETTDFGSADIEG-- 444
Query: 184 VLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISS 243
NP+L +I+ V+PG+IR AEHF+ FLK I YLK ++V++ E P FL +
Sbjct: 445 -YMNPLLRQDIVDRVMPGSIRKAEHFISFLKVVIGYLKKYIKVKEPKSEGPLMFLYRFQN 503
Query: 244 KPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERL 303
+ +IS+ +++ ++ R
Sbjct: 504 ETG--IISDVFQHTYN------------------------------------------RF 519
Query: 304 ASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLD 363
SLL TL++T + + ++L ++ +LV +Y KGF IIV+PF A +PV+ F CLD
Sbjct: 520 KSLLNTLKMT-VGNLTALHLVIDFCSLVGTYYKGFIIIVDPFPKSAAY--DPVIQFSCLD 576
Query: 364 SSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
+S+A+KPV + FQ+V++TSGT+SPL+ YPKILNF P++ S M+L R CL P++
Sbjct: 577 ASVAMKPVLENFQSVILTSGTMSPLEFYPKILNFSPILTQSLPMSLDRECLCPII 631
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 69/101 (68%), Gaps = 4/101 (3%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
I+ + V+FPY IYPEQ AYM LK LD+KGH +LEMP+GTGKT +L S + +Y A
Sbjct: 4 FWIEGIEVYFPYPKIYPEQIAYMKSLKNVLDSKGHAVLEMPTGTGKTVALFSFVSSYQLA 63
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINM 526
P ++ KL+YC+RT+ E+EK + EL+ + Y N ++N+
Sbjct: 64 KP-ELGKLVYCTRTIHEMEKALNELSVVISY---RNSQLNI 100
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 26/147 (17%)
Query: 685 ENIPVCDFYEKFDAVGREAPLAPGVYSITKLKE---------MGRELGLCPYFLARQAII 735
++ +C +YE + + + GVY++ LKE GR +CPYF AR+AI
Sbjct: 267 NSMGLCGYYETIERIWNPTFMPSGVYTLEGLKEYCLNFKDPRTGRPSPICPYFAARRAID 326
Query: 736 HAKIVVYSYHYLLDPKIANVVSKELARSS-----------------VVVFDEAHNIDNVC 778
A IVV +Y YL+DPK+++ V L S VVVFDEAHNIDNVC
Sbjct: 327 DANIVVLNYQYLIDPKVSDAVFYHLCTESYLKEKRDDKDSKPKLPIVVVFDEAHNIDNVC 386
Query: 779 VDSLSVRINRRTIEKAVGNIQTLEGTL 805
+++LSV ++ T++ A ++ LE ++
Sbjct: 387 IEALSVELSTETLDNAYSDLSRLENSV 413
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
Query: 560 VDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYL 619
+D C+ P +V + +++ + F+ R DI+++RNYG L++++ +PDGVVCFF SY
Sbjct: 622 LDRECLCPI-IVSKGDNQVHMTTKFDLRKDITLLRNYGSLVIELCKSIPDGVVCFFPSYA 680
Query: 620 YLESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
Y+E +++ WY+ GI+ ++ KL+FIET++++ +
Sbjct: 681 YMELILSHWYETGILSSIMSHKLVFIETKESIST 714
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+M+ AD R+ R KRSKLP WI + L L+ E A + K ++R+M+Q
Sbjct: 804 VIRNKGDYGLMVLADSRYTRVGKRSKLPVWILKRLDLGNFYLTCESASSIGKAFIRRMSQ 863
Query: 909 PF--TREDMLGVALLSLDQL 926
+ T+ G L+ ++L
Sbjct: 864 EYISTKRTKFGQTTLNNEKL 883
>gi|209736390|gb|ACI69064.1| TFIIH basal transcription factor complex helicase subunit [Salmo
salar]
Length = 319
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 102/170 (60%), Positives = 139/170 (81%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VS R GK VDG+CHSLT+S +R + ++ ++P C FYE+FDA+G++ PL GVY++ L
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQRQSNPSLPSCRFYEEFDAMGKQVPLPAGVYNLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K+ GR G CPY+LAR +I+HA I+VYSYHYLLDPKIA++VSKEL++ SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYYLARYSILHANIIVYSYHYLLDPKIADLVSKELSKKSVVVFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVE 170
NVC+DS+SV I RRT++++ N++TL+ T+ ++KE D+AKL+EEY RLVE
Sbjct: 241 NVCIDSMSVNITRRTLDRSQANVETLQNTILKIKETDAAKLKEEYRRLVE 290
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 102/170 (60%), Positives = 139/170 (81%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VS R GK VDG+CHSLT+S +R + ++ ++P C FYE+FDA+G++ PL GVY++ L
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQRQSNPSLPSCRFYEEFDAMGKQVPLPAGVYNLDDL 180
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K+ GR G CPY+LAR +I+HA I+VYSYHYLLDPKIA++VSKEL++ SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYYLARYSILHANIIVYSYHYLLDPKIADLVSKELSKKSVVVFDEAHNID 240
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVE 825
NVC+DS+SV I RRT++++ N++TL+ T+ ++KE D+AKL+EEY RLVE
Sbjct: 241 NVCIDSMSVNITRRTLDRSQANVETLQNTILKIKETDAAKLKEEYRRLVE 290
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/123 (67%), Positives = 100/123 (81%), Gaps = 1/123 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L I+ L V+FPY+YIYPEQY+YM+ELK+ LDAKGH +LEMPSGTGKT SLLSLIVAY
Sbjct: 1 MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
+PL+VTKL+YCSRTVPEIEKVVEEL +L ++Y K E+ N+ L LSSRKNLC+H E
Sbjct: 61 REYPLEVTKLIYCSRTVPEIEKVVEELRKLVEFYSKETGEKNNILALALSSRKNLCVHPE 120
Query: 543 FET 545
+
Sbjct: 121 VSS 123
>gi|355686451|gb|AER98062.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 [Mustela putorius furo]
Length = 291
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 102/151 (67%), Positives = 126/151 (83%)
Query: 268 LRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHL 327
LRVQ VVQESP FL ++ +VCI+RKPLRFCAERL SLL TLEI +L DFS L ++ +
Sbjct: 1 LRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANF 60
Query: 328 ATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSP 387
ATLVS+Y KGF II+EPF D+ PT+ NP+L+F C+D+SLAIKPVF+RFQ+V+ITSGTLSP
Sbjct: 61 ATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSP 120
Query: 388 LDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
LD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 121 LDIYPKILDFHPVTMATFTMTLARVCLCPMI 151
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 161 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 220
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 221 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 273
>gi|300706996|ref|XP_002995725.1| hypothetical protein NCER_101303 [Nosema ceranae BRL01]
gi|239604928|gb|EEQ82054.1| hypothetical protein NCER_101303 [Nosema ceranae BRL01]
Length = 476
Score = 225 bits (574), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 130/382 (34%), Positives = 208/382 (54%), Gaps = 53/382 (13%)
Query: 16 SLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLA 75
+L+S ++ K ++ CDFY + ++ + GVY++ KL +G+ G+CPY++
Sbjct: 122 ALSSRNIDITCKKLRDLEKCDFYTN---LYKDFTIPQGVYTLDKLINIGKSKGICPYYMI 178
Query: 76 RQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRT 135
R + ++Y+Y+YL+DPKI +VSK+L + +++FDEAHNID+ C+++L+ I R T
Sbjct: 179 RNGLGMCDCIIYTYNYLIDPKIYGIVSKDLGENCIIIFDEAHNIDSHCIEALTFEIKRNT 238
Query: 136 IEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEIL 195
++ A ++T+ L+ K+ L +EY ++ L T+ + + +E
Sbjct: 239 LDNATRCLKTIIKLLENKKKEQHNILLKEYQKMKGTLNIY-----TEDTIPHFYAEEEQK 293
Query: 196 QEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYR 255
E VPGN+R + HFVG LKR +E+ KT+L+ + E+PA+F + I
Sbjct: 294 FEFVPGNLRDSAHFVGVLKRLVEFFKTKLKTTHLTTETPASFCQSIKD------------ 341
Query: 256 YIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNL 315
TFL +K L FC++RL L++TL+ +
Sbjct: 342 -----------------------LTFL---------NKKTLSFCSQRLGLLVQTLDFED- 368
Query: 316 TDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRF 375
+ L + T+VS Y+KGF++I EPF +A TV NP+L CLDSS+AI VF +F
Sbjct: 369 DNLYFLRRVADFGTMVSMYSKGFSVIFEPFDTQAHTVFNPILRLACLDSSIAISQVFTKF 428
Query: 376 QTVVITSGTLSPLDMYPKILNF 397
V+ITSGTLSP++MYPKI F
Sbjct: 429 NNVIITSGTLSPIEMYPKIFKF 450
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 94/153 (61%), Gaps = 3/153 (1%)
Query: 671 SLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLA 730
+L+S ++ K ++ CDFY + ++ + GVY++ KL +G+ G+CPY++
Sbjct: 122 ALSSRNIDITCKKLRDLEKCDFYTN---LYKDFTIPQGVYTLDKLINIGKSKGICPYYMI 178
Query: 731 RQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRT 790
R + ++Y+Y+YL+DPKI +VSK+L + +++FDEAHNID+ C+++L+ I R T
Sbjct: 179 RNGLGMCDCIIYTYNYLIDPKIYGIVSKDLGENCIIIFDEAHNIDSHCIEALTFEIKRNT 238
Query: 791 IEKAVGNIQTLEGTLKEMKEADSAKLREEYARL 823
++ A ++T+ L+ K+ L +EY ++
Sbjct: 239 LDNATRCLKTIIKLLENKKKEQHNILLKEYQKM 271
Score = 109 bits (273), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 83/131 (63%), Gaps = 4/131 (3%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY- 482
M + +D+L V+FPY IYPEQ Y+ ELK +D GH L+EMPSGTGKT +LLS+ V+Y
Sbjct: 1 MIIKLDNLDVYFPYSQIYPEQLQYIKELKSNIDTNGHILIEMPSGTGKTVALLSITVSYI 60
Query: 483 --MNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIH 540
M KL+YCSRTV EI+K + EL L + YIK + G+ L+++K LC++
Sbjct: 61 IHMKRFFNKKVKLVYCSRTVSEIDKALYELENLIN-YIKQYINFDFLGVGLTAKKILCVN 119
Query: 541 SEFETRDDISV 551
E + +I +
Sbjct: 120 DEALSSRNIDI 130
>gi|145498283|ref|XP_001435129.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402259|emb|CAK67732.1| unnamed protein product [Paramecium tetraurelia]
Length = 722
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 130/411 (31%), Positives = 214/411 (52%), Gaps = 59/411 (14%)
Query: 10 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGRE--APLAPGVYSITKLKEMGREL 67
VD C T+ V K G+N C FY+ ++ G+E A L VYS+ L++ G
Sbjct: 127 VDAECRKRTAEWV----KRGQN-ETCIFYDNYEKSGKETIANLPHDVYSLNDLRKNGAYS 181
Query: 68 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSL 127
CPYF AR+ + A IVVY+Y YL+DP +++ ++K+ + SVVVFDEAHNID+VC+++
Sbjct: 182 IQCPYFTAREMVKKANIVVYNYLYLIDPTVSSQLTKDQIKESVVVFDEAHNIDDVCIEAY 241
Query: 128 SVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLAN 187
+VR+N+ + +A+ N++ +E ++ +L EEY +L++ L
Sbjct: 242 TVRLNKPILAEAINNLKVVETQIQSETNEIQNRLNEEYKKLIKNLEKKPEG--------- 292
Query: 188 PVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAP 247
E+ Q V+PG IR A +F+ F+KR I L+ +L+
Sbjct: 293 -----ELNQLVIPGQIRKARNFIDFMKRVINSLRKKLKDN-------------------- 327
Query: 248 SMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLL 307
SEA L+ + + F ++I + ++ L+ C ERL LL
Sbjct: 328 ---SEA--------------LKTSHAILHNTKGFTEEIQKEGNLDIDSLKQCGERLNLLL 370
Query: 308 RTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLA 367
TL+I F L + + Y +GF +I + ++ T+ ++ C DSSLA
Sbjct: 371 NTLQIAETDKFRPLSSVAQFVMYLVQYQEGFKVIFQS-NNYEGTLNEKLMTLACFDSSLA 429
Query: 368 IKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
+K +F +FQ+V++TSGT+SP+++YPKIL+F+PV+ S + L R + P++
Sbjct: 430 MKNIFAQFQSVILTSGTMSPIEIYPKILDFKPVVAKSIDIELTRNSIQPII 480
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 83/125 (66%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M +IDDL V FPY+++Y EQ YM LK+ LD KGH +LEMP+GTGKT SLL+LI+AY+
Sbjct: 1 MKFVIDDLEVIFPYKFLYKEQLEYMQALKQTLDEKGHGILEMPTGTGKTVSLLALIIAYL 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEF 543
P V KL+YC+RTV E+EK +EE+ + N T + LSSRKNLCI+ +
Sbjct: 61 AQRPNTVKKLIYCTRTVVEMEKTLEEVRLVLKARKAEGLNDNFTAVGLSSRKNLCINPDV 120
Query: 544 ETRDD 548
+ D
Sbjct: 121 INQKD 125
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 127/234 (54%), Gaps = 25/234 (10%)
Query: 665 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGRE--APLAPGVYSITKLKEMGREL 722
VD C T+ V K G+N C FY+ ++ G+E A L VYS+ L++ G
Sbjct: 127 VDAECRKRTAEWV----KRGQN-ETCIFYDNYEKSGKETIANLPHDVYSLNDLRKNGAYS 181
Query: 723 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSL 782
CPYF AR+ + A IVVY+Y YL+DP +++ ++K+ + SVVVFDEAHNID+VC+++
Sbjct: 182 IQCPYFTAREMVKKANIVVYNYLYLIDPTVSSQLTKDQIKESVVVFDEAHNIDDVCIEAY 241
Query: 783 SVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLAN 842
+VR+N+ + +A+ N++ +E ++ +L EEY +L++ L ++ + L
Sbjct: 242 TVRLNKPILAEAINNLKVVETQIQSETNEIQNRLNEEYKKLIKNLE-----KKPEGELNQ 296
Query: 843 PVLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAV 896
V+P +I + + M KR S +++ L DN L T A+
Sbjct: 297 LVIPGQIRKARNFIDFM----KRVINS---------LRKKLKDNSEALKTSHAI 337
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDN-LTNLSTEEAVQLSKRWLRQMA 907
+L+GK DYGIMI ADKRFA+ K K+P+WI + L + N+++E A+ + + + RQMA
Sbjct: 647 VLRGKQDYGIMIMADKRFAQKSKLQKMPRWIYKQLDQSRCLNITSETAITVVRDFFRQMA 706
Query: 908 QPFTRED 914
QPF D
Sbjct: 707 QPFKIAD 713
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 23/154 (14%)
Query: 548 DISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVV 607
DI + RN Q + I + DG L S F R++ V RNYG L++++ V
Sbjct: 468 DIELTRNSIQPI--IVTMSEDGT--------ELTSEFTLRNNEDVSRNYGNFLLELSENV 517
Query: 608 PDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD-ALDSRSVSKERDGKIVD 666
PDG++ F SY +E + W + K K+LFIE++D A S+ + + R K D
Sbjct: 518 PDGLIVFMPSYSRMEEWASIW------NKFSKNKVLFIESKDVAETSQKLQQYR--KCCD 569
Query: 667 -GRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAV 699
GR +L S + R K E I Y + AV
Sbjct: 570 VGRGAALFSIA---RGKIAEGIDFEGHYGRCVAV 600
Score = 41.6 bits (96), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLE 581
+ SEF R++ V RNYG L++++ VPDG++ F SY +E
Sbjct: 490 LTSEFTLRNNEDVSRNYGNFLLELSENVPDGLIVFMPSYSRME 532
>gi|308810260|ref|XP_003082439.1| DNA repair/transcription factor protein (ISS) [Ostreococcus tauri]
gi|116060907|emb|CAL57385.1| DNA repair/transcription factor protein (ISS) [Ostreococcus tauri]
Length = 792
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 116/251 (46%), Positives = 160/251 (63%), Gaps = 25/251 (9%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRH----------------KAGEN---IPVCDFYEKF 41
V+ E + VDGRC LT+S VR+R G+N + CD++E+F
Sbjct: 146 VADEGSRESVDGRCRRLTASWVRERRLERQARDAGRTVAAEDGEGDNEGGVSCCDWFEEF 205
Query: 42 DAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVV 101
+ G +A L PGVY++ L++ GR CPYFLAR I A ++VY+Y Y+LDPK+A++V
Sbjct: 206 ETAGEKAVLPPGVYTLHDLRQFGRAKKWCPYFLARNMISFANVIVYNYQYMLDPKVASLV 265
Query: 102 SKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKL 161
S L + VVVFDEAHNIDNVC+++LSV + ++T+E A +I +L + + K+ D +L
Sbjct: 266 SSALEKECVVVFDEAHNIDNVCIEALSVNLRQQTLENAGRSITSLNARIDKAKQTDERRL 325
Query: 162 REEYARLVEGLRD----AQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFI 217
R+EY RLV GL A+ E +L NPV+PD+IL+E VPGNIR AEHFV LKRF+
Sbjct: 326 RQEYERLVNGLAQQGVLARGGGED--MLMNPVIPDDILREAVPGNIRRAEHFVAVLKRFV 383
Query: 218 EYLKTRLRVQQ 228
EYLK RL+ Q
Sbjct: 384 EYLKFRLQSTQ 394
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 136/220 (61%), Gaps = 25/220 (11%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRH----------------KAGEN---IPVCDFYEK 695
+V+ E + VDGRC LT+S VR+R G+N + CD++E+
Sbjct: 145 AVADEGSRESVDGRCRRLTASWVRERRLERQARDAGRTVAAEDGEGDNEGGVSCCDWFEE 204
Query: 696 FDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANV 755
F+ G +A L PGVY++ L++ GR CPYFLAR I A ++VY+Y Y+LDPK+A++
Sbjct: 205 FETAGEKAVLPPGVYTLHDLRQFGRAKKWCPYFLARNMISFANVIVYNYQYMLDPKVASL 264
Query: 756 VSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAK 815
VS L + VVVFDEAHNIDNVC+++LSV + ++T+E A +I +L + + K+ D +
Sbjct: 265 VSSALEKECVVVFDEAHNIDNVCIEALSVNLRQQTLENAGRSITSLNARIDKAKQTDERR 324
Query: 816 LREEYARLVEGLRD----AQSARETDVVLANPVLPDEILQ 851
LR+EY RLV GL A+ E +L NPV+PD+IL+
Sbjct: 325 LRQEYERLVNGLAQQGVLARGGGED--MLMNPVIPDDILR 362
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 88/144 (61%), Gaps = 28/144 (19%)
Query: 424 MGLMIDD-----LPVFFPYEYIYPEQYA--------------------YMVELKKALDAK 458
M IDD + VFFPY+ +YPEQ A YM E+K+ALDA+
Sbjct: 1 MRFTIDDGGSAPIEVFFPYDSVYPEQVALARTRRLTRSARVRSIAKVAYMREMKRALDAR 60
Query: 459 GHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYI 518
GH +EMP+GTGKT ++LS+ V+Y AHP +V K++YC+RTVPE+EKV+EE+ L Y
Sbjct: 61 GHGAVEMPTGTGKTITVLSMCVSYQLAHP-EVGKIIYCTRTVPEMEKVLEEMKALQAYIE 119
Query: 519 KH--NEEINMTGLVLSSRKNLCIH 540
K E M L LSSRKN+C++
Sbjct: 120 KELGAETARMLSLGLSSRKNMCVN 143
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 47/60 (78%)
Query: 359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD+SLAIKPVF+RFQ+V ITSGTLSP+D+YPK+L F PV S MTL R CL PMV
Sbjct: 456 LACLDASLAIKPVFERFQSVFITSGTLSPIDLYPKLLGFNPVCAKSLEMTLTRECLCPMV 515
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 54/70 (77%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
F+ RDD +VI+NYG++LV +A VPDG+V FF SY Y+E++V+ W++ GI+ + + KL+
Sbjct: 529 FDVRDDPNVIQNYGRILVGLAQTVPDGIVAFFVSYSYMENIVSKWHETGILREIMQHKLV 588
Query: 644 FIETQDALDS 653
FIET D +++
Sbjct: 589 FIETTDVVET 598
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 64/99 (64%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ +E+D + + V +++ K DYG+M+FADKR+ DKR KL
Sbjct: 656 ARL-EYLRETFQIKESDFLAFDAVRQAAQCVGRVIRSKKDYGLMVFADKRYNSQDKRGKL 714
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P WI +L + + NLST+ A+Q+++ ++R M+QPF+ +D
Sbjct: 715 PGWITSHLHEEVLNLSTDMAMQVARTFMRSMSQPFSHDD 753
>gi|395529687|ref|XP_003766940.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit [Sarcophilus harrisii]
Length = 539
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 102/166 (61%), Positives = 133/166 (80%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
V + ++FDA+GR+ P+ G+Y++ LK GR+ G CPYFLAR +I+HA ++VYSYHYLL
Sbjct: 142 VPEIEKEFDALGRQTPIPWGIYNLDDLKAFGRQKGWCPYFLARYSILHANVIVYSYHYLL 201
Query: 749 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEM 808
DPKIA++VSKELAR +VVVFDEAHNIDNVC+DSL + RRT+++ N++TL+ T+ ++
Sbjct: 202 DPKIADLVSKELARKAVVVFDEAHNIDNVCIDSLRGNLTRRTLDRCQSNLETLQRTVHKI 261
Query: 809 KEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQGKT 854
KE D +LREEY RLVEGLR+A ARETD LANPVLPDE+LQG T
Sbjct: 262 KETDEKRLREEYHRLVEGLREASLARETDAHLANPVLPDEVLQGFT 307
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/163 (61%), Positives = 131/163 (80%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
V + ++FDA+GR+ P+ G+Y++ LK GR+ G CPYFLAR +I+HA ++VYSYHYLL
Sbjct: 142 VPEIEKEFDALGRQTPIPWGIYNLDDLKAFGRQKGWCPYFLARYSILHANVIVYSYHYLL 201
Query: 94 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEM 153
DPKIA++VSKELAR +VVVFDEAHNIDNVC+DSL + RRT+++ N++TL+ T+ ++
Sbjct: 202 DPKIADLVSKELARKAVVVFDEAHNIDNVCIDSLRGNLTRRTLDRCQSNLETLQRTVHKI 261
Query: 154 KEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 196
KE D +LREEY RLVEGLR+A ARETD LANPVLPDE+LQ
Sbjct: 262 KETDEKRLREEYHRLVEGLREASLARETDAHLANPVLPDEVLQ 304
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 88/129 (68%), Gaps = 9/129 (6%)
Query: 292 ERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLAT--LVSSYTKGFAIIVEPFSDKA 349
+ K LR RL LR + TD HLA L +GF II+EPF ++
Sbjct: 265 DEKRLREEYHRLVEGLREASLARETD-------AHLANPVLPDEVLQGFTIIIEPFDERT 317
Query: 350 PTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTL 409
PT+ NPVL+F C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTL
Sbjct: 318 PTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTL 377
Query: 410 ARPCLLPMV 418
AR CL PM+
Sbjct: 378 ARVCLCPMI 386
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 70/99 (70%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+MIFADKRFAR+DKR KL
Sbjct: 414 ARL-EFLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMIFADKRFARADKRGKL 472
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 473 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 511
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 46/54 (85%)
Query: 459 GHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512
GH +LEMPSGTGKT SLL+LIVAY AHPL+VTKL+YCSRTVPEIEK + L R
Sbjct: 101 GHGVLEMPSGTGKTISLLALIVAYQRAHPLEVTKLIYCSRTVPEIEKEFDALGR 154
>gi|389583177|dbj|GAB65913.1| DNA excision-repair helicase, partial [Plasmodium cynomolgi strain
B]
Length = 738
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 119/418 (28%), Positives = 229/418 (54%), Gaps = 72/418 (17%)
Query: 18 TSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGR--------ELGL 69
TS+S+ + ++ G +C ++E + + + PGVY+I LK + + + +
Sbjct: 139 TSNSLEEYNEIG----LCGYFENYKKEFQFELIQPGVYTIEDLKILCKGYKNAQNVSVPI 194
Query: 70 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVV--------SKELARSSVVVFDEAHNIDN 121
CPYF A++ I AK++V +Y Y++DPK++ + L ++ ++VFDEAHNID+
Sbjct: 195 CPYFCAKKIIEVAKVIVLNYQYVIDPKVSKSLFIGRDVNNRVNLQKNDIIVFDEAHNIDS 254
Query: 122 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARET 181
VC+++LS+++ ++ E+ + + + + + + +S ++Y+ L + + +
Sbjct: 255 VCLEALSLKLLGQSTEQPITSEKKDQTAVSSLFPEES----KDYSLLTNS--NNEGGEDP 308
Query: 182 DVVLANPVLPDEILQEVV-PGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
+ +P+L ++I++ V+ PGNIR AEHF+ ++ + YLK
Sbjct: 309 TELHYSPLLMEDIVKNVIIPGNIRKAEHFLNLMRVVVMYLK------------------- 349
Query: 241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
+Y+ + ++ E P +FL + ++ +FC
Sbjct: 350 --------------KYV-----------NIYEITSEGPLSFLYKCERETKLDTSFFKFCF 384
Query: 301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFC 360
+RL +L L+I N+ D+S+L ++ + TL+ SY +GF II EP+ + A + +PV+ F
Sbjct: 385 DRLKGILNALQIVNVEDYSALNIVCNFCTLLGSYFQGFIIICEPYPE-ATGIYDPVIQFA 443
Query: 361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLDSS+A+K V ++++V++TSGT++PL++YPK+LNF+ V+ SF M+ R C+ P++
Sbjct: 444 CLDSSIAMKSVIKKYRSVILTSGTITPLELYPKLLNFKTVLTASFPMSFDRNCVCPLI 501
Score = 109 bits (273), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 81/126 (64%), Gaps = 9/126 (7%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
+DDL VFFPY+YIYPEQYAYM LKK LD++GHC+LEMP+GTGKT ++ SLI +Y
Sbjct: 4 FQLDDLEVFFPYDYIYPEQYAYMRYLKKTLDSEGHCVLEMPTGTGKTVAIFSLITSYQYG 63
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH----NEEINMTGLVLSSRKNLCIHS 541
D K ++C+RT E EK+ EE +L +I+ N++IN G S R + S
Sbjct: 64 KN-DEGKFIFCTRT-HEREKIDEECRKLTATFIREKKYINQKINKLGNAHSDRDRI---S 118
Query: 542 EFETRD 547
EF ++
Sbjct: 119 EFIVKN 124
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 55/74 (74%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S F R DI+VI+NYG LLV++ +PDG+V +F SY+Y+E V++SWY+ GII ++
Sbjct: 511 LSSQFSLRSDITVIKNYGMLLVEMCKTIPDGIVAYFPSYIYMEEVISSWYELGIITSILD 570
Query: 640 RKLLFIETQDALDS 653
KL+FIET+D + +
Sbjct: 571 HKLVFIETKDIVST 584
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 83/139 (59%), Gaps = 20/139 (14%)
Query: 673 TSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGR--------ELGL 724
TS+S+ + ++ G +C ++E + + + PGVY+I LK + + + +
Sbjct: 139 TSNSLEEYNEIG----LCGYFENYKKEFQFELIQPGVYTIEDLKILCKGYKNAQNVSVPI 194
Query: 725 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVV--------SKELARSSVVVFDEAHNIDN 776
CPYF A++ I AK++V +Y Y++DPK++ + L ++ ++VFDEAHNID+
Sbjct: 195 CPYFCAKKIIEVAKVIVLNYQYVIDPKVSKSLFIGRDVNNRVNLQKNDIIVFDEAHNIDS 254
Query: 777 VCVDSLSVRINRRTIEKAV 795
VC+++LS+++ ++ E+ +
Sbjct: 255 VCLEALSLKLLGQSTEQPI 273
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
I++ K DYGIMIFAD R+AR+DK+SKLP WI + + + NL+ AV +S+++L M+Q
Sbjct: 674 IIRNKKDYGIMIFADIRYARNDKKSKLPPWIIKCMDMSNVNLTVSTAVNISRKFLLNMSQ 733
Query: 909 PF 910
+
Sbjct: 734 EY 735
>gi|390367539|ref|XP_784080.2| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like, partial [Strongylocentrotus purpuratus]
Length = 272
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 100/179 (55%), Positives = 130/179 (72%), Gaps = 16/179 (8%)
Query: 639 KRKLLFIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
+R L +IE Q AL SR VSKER GK+VD +CHSLT+S +R+R K
Sbjct: 88 RRLLDYIEEQTGEKPNFVGLALSSRKNLCIHPEVSKERIGKVVDSKCHSLTASYIRERRK 147
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
+P+CDFYE+FDA GR++P+ PG YS+ LKE+GR+ G CPYFLAR I HA I+VY
Sbjct: 148 HDPAVPICDFYEEFDAAGRDSPIEPGAYSLDDLKEIGRQNGWCPYFLARYTITHANIIVY 207
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 801
SYHYLLDPKIA VSKEL++ S V+FDEAHNIDNVC++S+SV I+R+T++K+ N+ +L
Sbjct: 208 SYHYLLDPKIAEQVSKELSKQSAVIFDEAHNIDNVCIESMSVNISRKTLDKSNQNLDSL 266
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 91/146 (62%), Positives = 119/146 (81%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKER GK+VD +CHSLT+S +R+R K +P+CDFYE+FDA GR++P+ PG YS+ L
Sbjct: 121 VSKERIGKVVDSKCHSLTASYIRERRKHDPAVPICDFYEEFDAAGRDSPIEPGAYSLDDL 180
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
KE+GR+ G CPYFLAR I HA I+VYSYHYLLDPKIA VSKEL++ S V+FDEAHNID
Sbjct: 181 KEIGRQNGWCPYFLARYTITHANIIVYSYHYLLDPKIAEQVSKELSKQSAVIFDEAHNID 240
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTL 146
NVC++S+SV I+R+T++K+ N+ +L
Sbjct: 241 NVCIESMSVNISRKTLDKSNQNLDSL 266
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 82/120 (68%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + +D L V FPY+YIYPEQ+ YM+ELKK LDAKGH +LEMPSGTGKT SLL+LIVAY+
Sbjct: 1 MKVNVDGLLVHFPYDYIYPEQFMYMMELKKLLDAKGHGVLEMPSGTGKTVSLLALIVAYI 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+P ++TKL+YCSRTVPEIEK VEEL RL DY + E+ N GL LSSRKNLCIH E
Sbjct: 61 QANPHELTKLIYCSRTVPEIEKAVEELRRLLDYIEEQTGEKPNFVGLALSSRKNLCIHPE 120
>gi|145495232|ref|XP_001433609.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124400728|emb|CAK66212.1| unnamed protein product [Paramecium tetraurelia]
Length = 702
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 125/411 (30%), Positives = 202/411 (49%), Gaps = 85/411 (20%)
Query: 10 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGRE--APLAPGVYSITKLKEMGREL 67
VD C T+ V K G++ +C FY+ F+ ++ A L VYS++ L++ G
Sbjct: 127 VDSECRKRTAEWV----KRGQS-EICIFYDNFEKSAKDFIANLPNDVYSLSDLRKNGGFS 181
Query: 68 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSL 127
CPY+ AR+ + A IVVY+Y YL+DP I++++SK+ + SVVVFDEAHNID+VC+++
Sbjct: 182 MQCPYYTAREMVKKANIVVYNYLYLIDPGISSLLSKDYIKESVVVFDEAHNIDDVCIEAY 241
Query: 128 SVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLAN 187
+VR+N+ + +A+ N++ +E ++ +L EEY +L++ L
Sbjct: 242 TVRLNKPILAEAINNLKVVETQIQSETNEIQNRLNEEYKKLIKNLEKKPEG--------- 292
Query: 188 PVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAP 247
E+ Q V+PG IR A +F+ F+KR I+ + L + ++
Sbjct: 293 -----ELNQLVIPGQIRKARNFIDFMKRIIQKHQKHLMLFYII----------------- 330
Query: 248 SMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLL 307
P LK K ++ L+ C ERL LL
Sbjct: 331 ------------------------------PKALLKRYKRKGNLDIDSLKQCGERLNLLL 360
Query: 308 RTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLA 367
TL+I F L + F I ++ T+ ++ C DSSLA
Sbjct: 361 NTLQIAETDKFRPLSTVAQ-----------FVIRIQ------RTLNEKLMTLACFDSSLA 403
Query: 368 IKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
+K +F FQ+V++TSGT+SP+D+YPKIL+F+PV+ S + L R + P++
Sbjct: 404 MKNIFASFQSVILTSGTMSPIDIYPKILDFKPVVAKSIDIELTRNSIQPII 454
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 82/125 (65%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M +IDD+ V FPY+++Y EQ YM LK+ LD KGH +LEMP+GTGKT SLL+ I+AY+
Sbjct: 1 MKFIIDDIEVIFPYKFLYKEQLEYMQALKQTLDEKGHGILEMPTGTGKTVSLLAFILAYL 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEF 543
P + KL+YC+RTV E+EK +EE+ + N T + LSSR+NLCI+ +
Sbjct: 61 AQRPNTIKKLIYCTRTVVEMEKTLEEVRLVMKARKAEGLNDNFTAVGLSSRRNLCINPDV 120
Query: 544 ETRDD 548
+ D
Sbjct: 121 VNQKD 125
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 115/192 (59%), Gaps = 12/192 (6%)
Query: 665 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGRE--APLAPGVYSITKLKEMGREL 722
VD C T+ V K G++ +C FY+ F+ ++ A L VYS++ L++ G
Sbjct: 127 VDSECRKRTAEWV----KRGQS-EICIFYDNFEKSAKDFIANLPNDVYSLSDLRKNGGFS 181
Query: 723 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSL 782
CPY+ AR+ + A IVVY+Y YL+DP I++++SK+ + SVVVFDEAHNID+VC+++
Sbjct: 182 MQCPYYTAREMVKKANIVVYNYLYLIDPGISSLLSKDYIKESVVVFDEAHNIDDVCIEAY 241
Query: 783 SVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLAN 842
+VR+N+ + +A+ N++ +E ++ +L EEY +L++ L ++ + L
Sbjct: 242 TVRLNKPILAEAINNLKVVETQIQSETNEIQNRLNEEYKKLIKNLE-----KKPEGELNQ 296
Query: 843 PVLPDEILQGKT 854
V+P +I + +
Sbjct: 297 LVIPGQIRKARN 308
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDN-LTNLSTEEAVQLSKRWLRQMA 907
+L+GK DYGIMI ADKRFA+ K SK+P+WI + L + N+++E A+ + + + RQMA
Sbjct: 627 VLRGKQDYGIMIMADKRFAQKSKLSKMPRWIYKQLDQSRCLNITSETAITVVRDFFRQMA 686
Query: 908 QPFTRED 914
QPF D
Sbjct: 687 QPFKIAD 693
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 15/153 (9%)
Query: 548 DISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVV 607
DI + RN Q + I + DG L S F R++ V RNYG L++++ V
Sbjct: 442 DIELTRNSIQPI--IVTMSEDGT--------ELTSEFTFRNNEDVSRNYGNFLLELSENV 491
Query: 608 PDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVD- 666
PDG++ F SY +E W ++ + K K+L IE++D ++ S ++ K D
Sbjct: 492 PDGLIVFMPSYSRMEEWARQWQKDKYLEQISKNKVLLIESKD-VNETSQKLQQYRKCCDV 550
Query: 667 GRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAV 699
GR +L S + R K E I Y + AV
Sbjct: 551 GRGAALFSIA---RGKIAEGIDFEGHYGRCVAV 580
Score = 41.2 bits (95), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLE 581
+ SEF R++ V RNYG L++++ VPDG++ F SY +E
Sbjct: 464 LTSEFTFRNNEDVSRNYGNFLLELSENVPDGLIVFMPSYSRME 506
>gi|432108806|gb|ELK33414.1| TFIIH basal transcription factor complex helicase XPD subunit,
partial [Myotis davidii]
Length = 600
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 120/150 (80%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FD GR+ PL G+Y++ L
Sbjct: 62 VTPLRFGKDVDGKCHSLTASYVRAQYQRDPSLPHCRFYEEFDIHGRQVPLPAGIYNLDDL 121
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 122 KAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 181
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTL 150
NVC+DS+SV + RRT+++ GN++TL+ T+
Sbjct: 182 NVCIDSMSVNLTRRTLDRCQGNLETLQKTV 211
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 120/150 (80%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE+FD GR+ PL G+Y++ L
Sbjct: 62 VTPLRFGKDVDGKCHSLTASYVRAQYQRDPSLPHCRFYEEFDIHGRQVPLPAGIYNLDDL 121
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K +GR G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct: 122 KAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 181
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTL 805
NVC+DS+SV + RRT+++ GN++TL+ T+
Sbjct: 182 NVCIDSMSVNLTRRTLDRCQGNLETLQKTV 211
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 84/128 (65%), Positives = 107/128 (83%)
Query: 291 IERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAP 350
+++ LRFCAERL SLL TLEI +L DFS L ++ + ATLVS+Y KGF II+EPF D+ P
Sbjct: 207 LQKTVLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTP 266
Query: 351 TVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLA 410
T+ NP+L+F C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLA
Sbjct: 267 TITNPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLA 326
Query: 411 RPCLLPMV 418
R CL PM+
Sbjct: 327 RVCLCPMI 334
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/138 (46%), Positives = 89/138 (64%), Gaps = 11/138 (7%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 344 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 403
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAV 699
KLLFIETQD ++ ++ +GR L S + R K E I DF F
Sbjct: 404 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGI---DFVHHF--- 454
Query: 700 GREAPL--APGVYSITKL 715
GR + P VY+ +++
Sbjct: 455 GRAVIMFGVPYVYTQSRI 472
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 70/99 (70%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 475 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 533
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 534 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 572
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 54/67 (80%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 3 LNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRV 62
Query: 486 HPLDVTK 492
PL K
Sbjct: 63 TPLRFGK 69
>gi|387593145|gb|EIJ88169.1| TFIIH helicase [Nematocida parisii ERTm3]
Length = 730
Score = 196 bits (498), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 193/379 (50%), Gaps = 78/379 (20%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY+++ P GVY++ LKE+G + G C Y+ AR +I A +VY+Y+Y++D
Sbjct: 155 CSFYKEYLKTAEGMP--SGVYTLDDLKEIGNKKGTCAYYTARSSIFLADCIVYTYNYMID 212
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ---------- 144
P+I ++VS L + VVVFDEAHNID+VCV+ L+V INR ++KA ++
Sbjct: 213 PRINDLVSSGLGSNCVVVFDEAHNIDSVCVEVLTVHINRACLDKAWKSLSDISEYSVSKS 272
Query: 145 -TLEGTLKEMKEADSAK-LREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGN 202
+L KE + K +R +++ L+EG + ++ +VPG
Sbjct: 273 LSLNNRNKEKTAYNKGKGIRSDFSSLLEGHKSSRK-----------------FTSLVPGT 315
Query: 203 IRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEE 262
+R+ F+ KR IE+ KT+L+ + E+ F+K++ +
Sbjct: 316 LRSINGFISAAKRIIEFFKTKLKNVNLTTETTDVFIKNLEN------------------- 356
Query: 263 HLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITN-LTDFSSL 321
T D SS V + R RL ++ LE+ + D+S L
Sbjct: 357 -----------------TVYVDFSSIVHLSR--------RLREIMGELEMHGFIEDYSEL 391
Query: 322 VVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVIT 381
+ +L + KGF+++ EPF+ + +V PVL+ CLDSS+A+K VF + V+IT
Sbjct: 392 SRVCDFCSLCGQFKKGFSVVFEPFN--SYSVYEPVLHLSCLDSSIAMKHVFSGYNNVIIT 449
Query: 382 SGTLSPLDMYPKILNFQPV 400
SGTLSP+ +YP++L+F P+
Sbjct: 450 SGTLSPISIYPRLLDFTPI 468
Score = 109 bits (273), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 92/154 (59%), Gaps = 14/154 (9%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY+++ P GVY++ LKE+G + G C Y+ AR +I A +VY+Y+Y++D
Sbjct: 155 CSFYKEYLKTAEGMP--SGVYTLDDLKEIGNKKGTCAYYTARSSIFLADCIVYTYNYMID 212
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ---------- 799
P+I ++VS L + VVVFDEAHNID+VCV+ L+V INR ++KA ++
Sbjct: 213 PRINDLVSSGLGSNCVVVFDEAHNIDSVCVEVLTVHINRACLDKAWKSLSDISEYSVSKS 272
Query: 800 -TLEGTLKEMKEADSAK-LREEYARLVEGLRDAQ 831
+L KE + K +R +++ L+EG + ++
Sbjct: 273 LSLNNRNKEKTAYNKGKGIRSDFSSLLEGHKSSR 306
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 103/194 (53%), Gaps = 33/194 (17%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + + ++ VFFP IYPEQ Y+ EL + + AKGHCL+EMP+GTGKT LLS +V+Y
Sbjct: 1 MIIKMGNIEVFFPKNKIYPEQMQYIKELHEVVQAKGHCLIEMPTGTGKTIVLLSFLVSY- 59
Query: 484 NAHPL------------------DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN 525
H + + K++YC+RT EIEKV+EEL L++Y + +I
Sbjct: 60 QIHLMTKEEGYERIQKNGFKRKEGIFKIVYCTRTTAEIEKVLEELKELYEYIKTYIPDIE 119
Query: 526 MTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLY----LE 581
TGL L++R+ LC++ DI+ + + LV+ C F+ YL +
Sbjct: 120 YTGLGLAARRTLCLNP------DINAVSS----LVNRRCRQEKEECSFYKEYLKTAEGMP 169
Query: 582 SVFETRDDISVIRN 595
S T DD+ I N
Sbjct: 170 SGVYTLDDLKEIGN 183
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 57/91 (62%), Gaps = 8/91 (8%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S F R + +V+RNYG LL++++ VPDG+VCFF SY Y+E VA+W + GII + +
Sbjct: 503 LSSTFSLRAEPAVVRNYGNLLLEMSMSVPDGLVCFFPSYKYMEEAVAAWTESGIIKKIME 562
Query: 640 RKLLFI------ETQDALDS--RSVSKERDG 662
KL+F+ ET+ ALD R+ R G
Sbjct: 563 CKLIFVESFEHAETERALDGYKRACETGRGG 593
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 811 ADSAKLREEYARLVE--GLRDAQSARETDVVLANPVLPDEILQGKTDYGIMIFADKRFAR 868
+S +L++ L E G+R+++ D + +L+ TDYG+ + AD+RF
Sbjct: 627 TESPRLKKRLEFLAEEFGIRESEFL-SFDAMRQTAQCVGRVLRTSTDYGLAVLADRRFNV 685
Query: 869 SDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQ 905
+K+++LP+WIQ +L + NLS + ++ ++++ R+
Sbjct: 686 PEKKTQLPRWIQRHLEETSVNLSIDMSITQARQFFRR 722
>gi|387596142|gb|EIJ93764.1| TFIIH helicase [Nematocida parisii ERTm1]
Length = 730
Score = 196 bits (498), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 193/379 (50%), Gaps = 78/379 (20%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY+++ P GVY++ LKE+G + G C Y+ AR +I A +VY+Y+Y++D
Sbjct: 155 CSFYKEYLKTAEGMP--SGVYTLDDLKEIGNKKGTCAYYTARSSIFLADCIVYTYNYMID 212
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ---------- 144
P+I ++VS L + VVVFDEAHNID+VCV+ L+V INR ++KA ++
Sbjct: 213 PRINDLVSSGLGSNCVVVFDEAHNIDSVCVEVLTVHINRACLDKAWKSLSDISEYSVSKS 272
Query: 145 -TLEGTLKEMKEADSAK-LREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGN 202
+L KE + K +R +++ L+EG + ++ +VPG
Sbjct: 273 LSLNNRNKEKTAYNKGKGIRSDFSSLLEGHKSSRK-----------------FTSLVPGT 315
Query: 203 IRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEE 262
+R+ F+ KR IE+ KT+L+ + E+ F+K++ +
Sbjct: 316 LRSINGFISAAKRIIEFFKTKLKNVNLTTETTDVFIKNLEN------------------- 356
Query: 263 HLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITN-LTDFSSL 321
T D SS V + R RL ++ LE+ + D+S L
Sbjct: 357 -----------------TVYVDFSSIVHLSR--------RLREIMGELEMHGFIEDYSEL 391
Query: 322 VVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVIT 381
+ +L + KGF+++ EPF+ + +V PVL+ CLDSS+A+K VF + V+IT
Sbjct: 392 SRVCDFCSLCGQFKKGFSVVFEPFN--SYSVYEPVLHLSCLDSSIAMKHVFSGYNNVIIT 449
Query: 382 SGTLSPLDMYPKILNFQPV 400
SGTLSP+ +YP++L+F P+
Sbjct: 450 SGTLSPISIYPRLLDFTPI 468
Score = 109 bits (273), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 92/154 (59%), Gaps = 14/154 (9%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY+++ P GVY++ LKE+G + G C Y+ AR +I A +VY+Y+Y++D
Sbjct: 155 CSFYKEYLKTAEGMP--SGVYTLDDLKEIGNKKGTCAYYTARSSIFLADCIVYTYNYMID 212
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ---------- 799
P+I ++VS L + VVVFDEAHNID+VCV+ L+V INR ++KA ++
Sbjct: 213 PRINDLVSSGLGSNCVVVFDEAHNIDSVCVEVLTVHINRACLDKAWKSLSDISEYSVSKS 272
Query: 800 -TLEGTLKEMKEADSAK-LREEYARLVEGLRDAQ 831
+L KE + K +R +++ L+EG + ++
Sbjct: 273 LSLNNRNKEKTAYNKGKGIRSDFSSLLEGHKSSR 306
Score = 106 bits (264), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 102/194 (52%), Gaps = 33/194 (17%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + + ++ VFFP IYPEQ Y+ EL + + AKG CL+EMP+GTGKT LLS +V+Y
Sbjct: 1 MIIKMGNIEVFFPKNKIYPEQMQYIKELHEVVQAKGQCLIEMPTGTGKTIVLLSFLVSY- 59
Query: 484 NAHPL------------------DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN 525
H + + K++YC+RT EIEKV+EEL L++Y + +I
Sbjct: 60 QIHLMTKEEGYERIQKNGFKRKEGIFKIVYCTRTTAEIEKVLEELKELYEYIKTYIPDIE 119
Query: 526 MTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLY----LE 581
TGL L++R+ LC++ DI+ + + LV+ C F+ YL +
Sbjct: 120 YTGLGLAARRTLCLNP------DINAVSS----LVNRRCRQEKEECSFYKEYLKTAEGMP 169
Query: 582 SVFETRDDISVIRN 595
S T DD+ I N
Sbjct: 170 SGVYTLDDLKEIGN 183
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 57/91 (62%), Gaps = 8/91 (8%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S F R + +V+RNYG LL++++ VPDG+VCFF SY Y+E VA+W + GII + +
Sbjct: 503 LSSTFSLRAEPAVVRNYGNLLLEMSMSVPDGLVCFFPSYKYMEEAVAAWTESGIIKKIME 562
Query: 640 RKLLFI------ETQDALDS--RSVSKERDG 662
KL+F+ ET+ ALD R+ R G
Sbjct: 563 CKLIFVESFEHAETERALDGYKRACETGRGG 593
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 811 ADSAKLREEYARLVE--GLRDAQSARETDVVLANPVLPDEILQGKTDYGIMIFADKRFAR 868
+S +L++ L E G+R+++ D + +L+ TDYG+ + AD+RF
Sbjct: 627 TESPRLKKRLEFLAEEFGIRESEFL-SFDAMRQTAQCVGRVLRTSTDYGLAVLADRRFNV 685
Query: 869 SDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQ 905
+K+++LP+WIQ +L + NLS + ++ ++++ R+
Sbjct: 686 PEKKTQLPRWIQRHLEETSVNLSIDMSITQARQFFRR 722
>gi|402465654|gb|EJW01367.1| DNA repair helicase (rad3) [Edhazardia aedis USNM 41457]
Length = 942
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 124/401 (30%), Positives = 217/401 (54%), Gaps = 41/401 (10%)
Query: 53 GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVV 112
GVY++ L +G+ +CPYFLAR+ + + I++++Y+YL+DP+I ++V KE+ +S+V+
Sbjct: 282 GVYTLADLVTLGKTKNICPYFLARKILASSDIIIFTYNYLIDPRIKSIVLKEIGLNSIVI 341
Query: 113 FDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARL-VEG 171
FDEAHNIDN C++++SV I R +E A I+ LE +++ + LREE ++ E
Sbjct: 342 FDEAHNIDNACIEAMSVDIKRSDLENANKEIKALELEIQKARAESIEILREEAEKIKTEK 401
Query: 172 LRDAQSARETDVVLANPVLPDEILQEVVPG-NIRTAEH-----FVGF-----LKR----F 216
L + + V N L D +++ N++T ++ +GF +K
Sbjct: 402 LHYVEGS-----VPYNSNLLDSYYEKLCNSKNMKTEQNNKNKKHIGFDVNDDVKNDSILS 456
Query: 217 IEYLKTRLRVQQVVQESPATFLK----------------DISSKPAPSMISEAYRYIFST 260
I + L + + F +++ + AP I + ++ +
Sbjct: 457 INNNEKNLEINENKNNDKTNFYNINDEKNAKKQEGLDFFNLNYEFAPGNIRNSIHFLSTL 516
Query: 261 E---EHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTD 317
+ E+ KT+L+ + E+ ++F K I I++K L F + RL+ L+RTL + +
Sbjct: 517 KRLTEYFKTKLKTTHLTTETTSSFCKSIKDLTLIDKKTLSFLSTRLSLLIRTLNLNGKIE 576
Query: 318 FSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQT 377
S++ + ++ + Y GF+II EPF A TV +P+L C+D+S+A+K VF +++
Sbjct: 577 LSAIKKLCDFGSIAAQYQNGFSIIFEPFDSMAQTVFSPILRLYCMDASIALKSVFS-YRS 635
Query: 378 VVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
V+ITSGTLSP+D Y KIL+F PV + L R C+ P++
Sbjct: 636 VIITSGTLSPMDFYCKILDFIPVKHKEIGIRLKRNCIGPLI 676
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 80/116 (68%)
Query: 708 GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVV 767
GVY++ L +G+ +CPYFLAR+ + + I++++Y+YL+DP+I ++V KE+ +S+V+
Sbjct: 282 GVYTLADLVTLGKTKNICPYFLARKILASSDIIIFTYNYLIDPRIKSIVLKEIGLNSIVI 341
Query: 768 FDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARL 823
FDEAHNIDN C++++SV I R +E A I+ LE +++ + LREE ++
Sbjct: 342 FDEAHNIDNACIEAMSVDIKRSDLENANKEIKALELEIQKARAESIEILREEAEKI 397
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 67/183 (36%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY- 482
M ++I+++ V+FP+ +YPEQ+ Y+ E+ L +GHCLLEMPSGTGKT SLLS I++Y
Sbjct: 1 MKVVINEITVYFPFPTMYPEQHEYISEVLSLLKTQGHCLLEMPSGTGKTISLLSSIISYI 60
Query: 483 ----------------------------MNAHPLDVTKL-------LYC----------- 496
++ + D++ + +YC
Sbjct: 61 LHLKENFRTVQTECNTDITSSALNKRAKISKNKTDLSAVQNCYETEIYCEKNDFVTRNIS 120
Query: 497 ------SRTVP----------EIEKVVEELARLFDYYIKHNEEINMT---GLVLSSRKNL 537
SR +P EIEK +EEL L + YI++ +I+M+ G+ L+SR L
Sbjct: 121 NLDSSFSRAIPKIMYGSRTVGEIEKALEELKFLIN-YIENEYKIDMSDFLGVGLTSRNVL 179
Query: 538 CIH 540
C++
Sbjct: 180 CVN 182
Score = 75.9 bits (185), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 50/70 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S + R+D SVIRNYG L+++ + + PDG+V FF SY+++E +V+ W + II ++K
Sbjct: 717 VSSSYSLRNDPSVIRNYGLLIIEFSKITPDGLVVFFPSYIFMEEIVSCWSELNIITEIKK 776
Query: 640 RKLLFIETQD 649
KL+FIET D
Sbjct: 777 NKLIFIETPD 786
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 43/61 (70%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+ K DYG+MI AD RF + D++ KLPKWI + TNLS + AV ++KR+ R+MAQ
Sbjct: 880 VLRDKNDYGLMIMADYRFEKGDRKKKLPKWILNCIEGGNTNLSIDMAVCIAKRFYREMAQ 939
Query: 909 P 909
P
Sbjct: 940 P 940
>gi|378755713|gb|EHY65739.1| TFIIH helicase [Nematocida sp. 1 ERTm2]
Length = 627
Score = 192 bits (487), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 117/379 (30%), Positives = 191/379 (50%), Gaps = 78/379 (20%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY+++ + P G++++ LKE+G + C Y+ AR +I A VVY+Y+Y++D
Sbjct: 155 CTFYKEYLKMTENIP--SGIHTLDGLKEIGTQTNRCAYYTARSSIFLADCVVYTYNYMID 212
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL---- 150
P+I+ +VS + VVVFDEAHNID+VCV+ L+V INR ++KA ++ T+ +
Sbjct: 213 PRISELVSSGFGSNCVVVFDEAHNIDSVCVEVLTVHINRTCLDKAWKSLCTISDYMVSRN 272
Query: 151 -------KEMKEADSAK-LREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGN 202
+E + K ++ +YA L+EG + ++ +VPG
Sbjct: 273 ISLNRNERERSMYNRGKGIKSDYASLLEGHKSSRK-----------------FTSLVPGT 315
Query: 203 IRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEE 262
+R F+ KR IE+ KT+L+ + E+ F+K + +
Sbjct: 316 LRNISGFISATKRIIEFFKTKLKNVNLTTETTEVFVKTLEN------------------- 356
Query: 263 HLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLT-DFSSL 321
T D SS + + R RL ++ LE+ T D+S L
Sbjct: 357 -----------------TVFIDFSSLIHLSR--------RLREIMGELEMHGFTDDYSEL 391
Query: 322 VVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVIT 381
+ +L + KGF++I EPF+ + ++ PVL+ CLDSS+A+K VF + V+IT
Sbjct: 392 SRVCDFCSLSGQFKKGFSVIFEPFN--SYSIYEPVLHLSCLDSSIAMKRVFSGYNNVIIT 449
Query: 382 SGTLSPLDMYPKILNFQPV 400
SGTLSP+ +YP++L+F PV
Sbjct: 450 SGTLSPISIYPRLLDFTPV 468
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 92/154 (59%), Gaps = 14/154 (9%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY+++ + P G++++ LKE+G + C Y+ AR +I A VVY+Y+Y++D
Sbjct: 155 CTFYKEYLKMTENIP--SGIHTLDGLKEIGTQTNRCAYYTARSSIFLADCVVYTYNYMID 212
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL---- 805
P+I+ +VS + VVVFDEAHNID+VCV+ L+V INR ++KA ++ T+ +
Sbjct: 213 PRISELVSSGFGSNCVVVFDEAHNIDSVCVEVLTVHINRTCLDKAWKSLCTISDYMVSRN 272
Query: 806 -------KEMKEADSAK-LREEYARLVEGLRDAQ 831
+E + K ++ +YA L+EG + ++
Sbjct: 273 ISLNRNERERSMYNRGKGIKSDYASLLEGHKSSR 306
Score = 102 bits (255), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 81/135 (60%), Gaps = 19/135 (14%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + + ++ VFFP IY EQ Y+ EL + + KGHCL+EMP+GTGKT LLS +++Y
Sbjct: 1 MIIKMGNIEVFFPKNNIYQEQMQYIKELYEVVQDKGHCLIEMPTGTGKTIVLLSFLMSY- 59
Query: 484 NAHPL------------------DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN 525
H + V K++YC+RT EIEKV+EEL L+DY + +++
Sbjct: 60 QIHLMTKEEGYEKIREKGFKRREGVFKIIYCTRTTAEIEKVLEELKELYDYIKTYIPDLD 119
Query: 526 MTGLVLSSRKNLCIH 540
TGL L++R+ LC++
Sbjct: 120 YTGLGLAARRTLCLN 134
Score = 79.3 bits (194), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 50/70 (71%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S F R + +V+RNYG LL+++A VPDG+VCFF SY Y+E VA+W + GII + +
Sbjct: 503 ISSTFSLRAEPAVVRNYGNLLLEMAMSVPDGMVCFFPSYRYMEEAVAAWTESGIIKKIME 562
Query: 640 RKLLFIETQD 649
KL+F+E+ D
Sbjct: 563 CKLIFVESFD 572
>gi|156081706|ref|XP_001608346.1| DNA excision-repair helicase [Plasmodium vivax Sal-1]
gi|148800917|gb|EDL42322.1| DNA excision-repair helicase, putative [Plasmodium vivax]
Length = 1041
Score = 192 bits (487), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 135/437 (30%), Positives = 212/437 (48%), Gaps = 44/437 (10%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
+DDL VFFPY+YIYPEQYAYM LKK LD++GHC+LEMP+GTGKT ++ SLI +Y +
Sbjct: 4 FQLDDLEVFFPYDYIYPEQYAYMRYLKKTLDSEGHCVLEMPTGTGKTVAIFSLITSYQHG 63
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFET 545
D K ++C+RTV E+EK + EL ++ Y + ++G V R + +E E
Sbjct: 64 KN-DEGKFIFCTRTVAEMEKSLIELKKVIQYRVDTLRRRVVSGEVKGERADE--RAEDEM 120
Query: 546 RDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIAC 605
+D + + D + R G L DI
Sbjct: 121 KDQTG----------EQTTANDANDANDANQANDATTANHANDATAAQRRSGDLQGDILA 170
Query: 606 VVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSR-----SVSKER 660
+ C + E V+ + I + +K F+ + + R S +R
Sbjct: 171 IGISARRCMCVN----ERVLRKHEREKIDEECRKLTATFVREKKYISQRISKLGSTHSDR 226
Query: 661 DGK-IVDGRCH-----SLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
+ IV R H R+ + +I +C +YE + + PGVY+I
Sbjct: 227 VSEFIVKNRQHIDVEDYFDIYHTRNSLEEYNDIGLCGYYENYKKEFLFELIQPGVYTIED 286
Query: 715 LKEMGRE--------LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIAN--VVSKE----- 759
LK M + + +CPYF A++ I AK++V +Y Y++DPK++ + +E
Sbjct: 287 LKVMCKRYKNAQNETVPICPYFCAKKVIEVAKVIVLNYQYVIDPKVSKSLFIGREVNSRV 346
Query: 760 -LARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLRE 818
L + ++VFDEAHNID+VC+++LSV I+R + KA NI+ L ++ K + KLRE
Sbjct: 347 NLHKRDIIVFDEAHNIDSVCLEALSVNIDRNVLNKATANIKKLLSKIEASKVLNEEKLRE 406
Query: 819 EYARLVEGLRDAQSARE 835
E R++ +R+ + E
Sbjct: 407 ECTRILRRVREEKRGGE 423
Score = 142 bits (359), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 130/236 (55%), Gaps = 46/236 (19%)
Query: 187 NPVLPDEILQEVV-PGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKP 245
+P+L ++ ++ VV PGNIR +EHF+ ++ + YL+
Sbjct: 587 SPLLMEDAVKNVVLPGNIRKSEHFLNLMRIVVMYLR------------------------ 622
Query: 246 APSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLAS 305
+Y+ + +V E P +FL + ++ +FC +RL +
Sbjct: 623 ---------KYV-----------NIYEVTSEGPLSFLYKCERETKLDTSFFKFCFDRLKA 662
Query: 306 LLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSS 365
LL L+I + D+S+L V+ + TL+ SY +GF II EP+ + A + +PV+ F CLDSS
Sbjct: 663 LLNALQIVTVDDYSALNVVCNFCTLLGSYFQGFIIICEPYPE-ATGIYDPVIQFACLDSS 721
Query: 366 LAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMVREN 421
+A+K V ++++V++TSGT++PL++YPK+LNF+ V+ SF M+ R C+ P++ N
Sbjct: 722 IAMKAVIGKYRSVILTSGTITPLELYPKLLNFKTVLTASFPMSFDRNCVCPLIVTN 777
Score = 106 bits (264), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 96/166 (57%), Gaps = 16/166 (9%)
Query: 31 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRE--------LGLCPYFLARQAIIHA 82
+I +C +YE + + PGVY+I LK M + + +CPYF A++ I A
Sbjct: 258 DIGLCGYYENYKKEFLFELIQPGVYTIEDLKVMCKRYKNAQNETVPICPYFCAKKVIEVA 317
Query: 83 KIVVYSYHYLLDPKIAN--VVSKE------LARSSVVVFDEAHNIDNVCVDSLSVRINRR 134
K++V +Y Y++DPK++ + +E L + ++VFDEAHNID+VC+++LSV I+R
Sbjct: 318 KVIVLNYQYVIDPKVSKSLFIGREVNSRVNLHKRDIIVFDEAHNIDSVCLEALSVNIDRN 377
Query: 135 TIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
+ KA NI+ L ++ K + KLREE R++ +R+ + E
Sbjct: 378 VLNKATANIKKLLSKIEASKVLNEEKLREECTRILRRVREEKRGGE 423
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 561 DIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLY 620
D CV P +V + + L S F R D++VI+NYG LLV++ +PDG+V +F SY+Y
Sbjct: 766 DRNCVCPL-IVTNSSDLVPLSSQFSLRSDLTVIKNYGMLLVEMCKTIPDGIVAYFPSYIY 824
Query: 621 LESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+E V++SWY+ GII ++ + KL+FIET+D + +
Sbjct: 825 MEEVISSWYELGIITSILECKLIFIETKDIVST 857
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
I++ K DYGIMIFAD R+AR+DK+SKLP WI + + + NL+ AV +S+++L M+Q
Sbjct: 947 IIRNKKDYGIMIFADIRYARNDKKSKLPPWIIKCMELSNVNLTVSTAVNISRKFLLNMSQ 1006
Query: 909 PF 910
+
Sbjct: 1007 EY 1008
>gi|34527746|dbj|BAC85446.1| unnamed protein product [Homo sapiens]
Length = 453
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/124 (68%), Positives = 105/124 (84%)
Query: 295 PLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPN 354
P RFCAERL SLL TLEIT+L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ N
Sbjct: 64 PARFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIAN 123
Query: 355 PVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCL 414
P+L+F C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL
Sbjct: 124 PILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCL 183
Query: 415 LPMV 418
PM+
Sbjct: 184 CPMI 187
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 77/116 (66%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S ETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 197 ISSKLETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 256
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 257 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 309
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 69/99 (69%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR DKR KL
Sbjct: 328 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKL 386
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 387 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 425
>gi|441656294|ref|XP_004091106.1| PREDICTED: LOW QUALITY PROTEIN: TFIIH basal transcription factor
complex helicase XPD subunit [Nomascus leucogenys]
Length = 546
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/124 (68%), Positives = 105/124 (84%)
Query: 295 PLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPN 354
P RFCAERL SLL TLEIT+L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ N
Sbjct: 154 PTRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIAN 213
Query: 355 PVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCL 414
P+L+F C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL
Sbjct: 214 PILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCL 273
Query: 415 LPMV 418
PM+
Sbjct: 274 CPMI 277
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 78/121 (64%), Gaps = 27/121 (22%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM ELK+ LDAK
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAK------------------------- 35
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 36 -AYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 94
Query: 543 F 543
+
Sbjct: 95 W 95
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 287 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 346
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 347 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 399
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 68/98 (69%), Gaps = 6/98 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR DKR KL
Sbjct: 418 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKL 476
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRE 913
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF R+
Sbjct: 477 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRQ 514
>gi|294879226|ref|XP_002768609.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
gi|239871280|gb|EER01327.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
Length = 887
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 125/448 (27%), Positives = 217/448 (48%), Gaps = 108/448 (24%)
Query: 35 CDFYEKFD----AVGR---------------EAPLAPGVYSITKLKEMGRELGLCPYFLA 75
C F+E++D VG+ + + GVY++ L+ G G CPY+++
Sbjct: 193 CSFFEQYDELIGGVGKRYNNDSESASNEEKKKFAIPSGVYTLEDLRVAGGAEGWCPYYMS 252
Query: 76 RQAIIHAKIVVYSYHYLLDPKIAN-------------VVSKELARS-------------- 108
++ + HA ++V++Y Y+LDP+++ + LA+
Sbjct: 253 KRLLRHADVIVFNYQYVLDPRVSASALIAGEASGRGVMTHGALAKEGEERPAALGVDNND 312
Query: 109 -------SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKL 161
+VV+FDEAHNID++C+D+L+V ++R+TI++A N++ L+ + ++K+ D A+L
Sbjct: 313 DDQQFEPAVVIFDEAHNIDDICMDALTVTVDRKTIDRASSNVKRLQHEVTQLKKVDEARL 372
Query: 162 REEYARLVEGLRDAQSARETD-VVLANPVLPDEILQE-------VVPGNIRTAEHFVGFL 213
+ E L+ GL A E D + A P+E+ + V+PGN+R AEHF+G L
Sbjct: 373 KAEVENLMRGLAPASGMSEEDESISALRFGPNELKKAVSGVSHLVIPGNVRQAEHFLGVL 432
Query: 214 KRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQV 273
++ +L+ +RV + E P FL ++ S QQ
Sbjct: 433 QQVCAFLRAYIRVDKARAEGPLMFLHELES---------------------------QQF 465
Query: 274 VQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSS 333
IE + ++ RL SL+ TL+IT++ +FS L I L TL S
Sbjct: 466 -----------------IEARTMKAFDARLRSLMNTLKITDIDEFSPLTKICDLCTLASL 508
Query: 334 YTKGFAIIVEPFSDKAPTVP--NPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMY 391
++KGFA++ +P + + P V + + AI + ++V+TSGTLSPL MY
Sbjct: 509 HSKGFAVLTDPCPEAEVSQPVLREVAQYLVKNVKFAICSRREICFSLVLTSGTLSPLSMY 568
Query: 392 PKILNFQPVIM-HSFSMTLARPCLLPMV 418
K+L V++ + ++L R C+ P++
Sbjct: 569 SKLLGLDRVVVSEALDISLERDCIRPLI 596
Score = 112 bits (280), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 86/131 (65%), Gaps = 9/131 (6%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAK-GHCLLEMPSGTGKTTSLLSLIVAYMN 484
L ID L V FPY+ IYPEQ YM LK+ALDA G L+EMP+GTGKT +++SLI +Y
Sbjct: 6 LNIDGLRVLFPYDAIYPEQVQYMHYLKQALDASHGQGLIEMPTGTGKTVTIMSLITSYQL 65
Query: 485 AHPLDVTKLLYCSRTVPEIEKVVEELARLFDY--YIKHNEEIN-----MTGLVLSSRKNL 537
+HP + KL+YC+RTVPE+ + + EL + +Y + +E+ + G+ LS+R+N+
Sbjct: 66 SHP-QMGKLVYCTRTVPEMNQAIRELKLVIEYRERVLASEKPDEAPQKFLGIGLSARRNM 124
Query: 538 CIHSEFETRDD 548
CIH + + D
Sbjct: 125 CIHPDVANQAD 135
Score = 103 bits (256), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 103/201 (51%), Gaps = 53/201 (26%)
Query: 690 CDFYEKFD----AVGR---------------EAPLAPGVYSITKLKEMGRELGLCPYFLA 730
C F+E++D VG+ + + GVY++ L+ G G CPY+++
Sbjct: 193 CSFFEQYDELIGGVGKRYNNDSESASNEEKKKFAIPSGVYTLEDLRVAGGAEGWCPYYMS 252
Query: 731 RQAIIHAKIVVYSYHYLLDPKIAN-------------VVSKELARS-------------- 763
++ + HA ++V++Y Y+LDP+++ + LA+
Sbjct: 253 KRLLRHADVIVFNYQYVLDPRVSASALIAGEASGRGVMTHGALAKEGEERPAALGVDNND 312
Query: 764 -------SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKL 816
+VV+FDEAHNID++C+D+L+V ++R+TI++A N++ L+ + ++K+ D A+L
Sbjct: 313 DDQQFEPAVVIFDEAHNIDDICMDALTVTVDRKTIDRASSNVKRLQHEVTQLKKVDEARL 372
Query: 817 REEYARLVEGLRDAQSARETD 837
+ E L+ GL A E D
Sbjct: 373 KAEVENLMRGLAPASGMSEED 393
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 85/167 (50%), Gaps = 23/167 (13%)
Query: 501 PEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLL- 559
PE E L + Y +K+ + SR+ +C S T +S + Y +LL
Sbjct: 521 PEAEVSQPVLREVAQYLVKN------VKFAICSRREICF-SLVLTSGTLSPLSMYSKLLG 573
Query: 560 ---------VDIA----CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACV 606
+DI+ C+ P ++ ++ + L S F++R D V + YG LL ++ V
Sbjct: 574 LDRVVVSEALDISLERDCIRP--LIVTRSNDVVLSSSFQSRKDEEVSKCYGTLLEELVQV 631
Query: 607 VPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
VPDGVVCFFTS ++++ VV +WYD G + L K++F ET D + +
Sbjct: 632 VPDGVVCFFTSKVFMQQVVRTWYDSGTLARLSTHKVVFFETDDVVST 678
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 45/68 (66%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+ K DYG+M+ AD R+AR+DKR KLP WI ++L +NL+ + AV +K +L M+Q
Sbjct: 768 VLRSKQDYGLMVLADARYARADKRKKLPPWIGKFLIPAFSNLTVDMAVSSAKEFLLSMSQ 827
Query: 909 PFTREDML 916
P + L
Sbjct: 828 PMKHQAGL 835
>gi|331231040|ref|XP_003328184.1| TFIIH basal transcription factor complex helicase subunit [Puccinia
graminis f. sp. tritici CRL 75-36-700-3]
Length = 576
Score = 186 bits (472), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 149/244 (61%), Gaps = 23/244 (9%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPLAPGVYSITK 59
VS+E+ GK+VD RC LTS+ ++ +A ++P+CDF+EK + + GV+++ +
Sbjct: 91 VSREKKGKVVDARCRDLTSAWACEKGRADPGSVPLCDFHEKLGELEPGNLIPRGVWTLEE 150
Query: 60 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
+ G + G+CPYF R+ + A VSKEL +S+VVFDEAHNI
Sbjct: 151 ITAYGHQHGICPYFAVRRMV------------------ATQVSKELLPNSIVVFDEAHNI 192
Query: 120 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 179
DNVC++SLS+ + + ++ A +I L+ ++E+K D++KL+ EY RLV GL +++
Sbjct: 193 DNVCIESLSIDLTKGMLDNAGKSIGALDEKIREIKRTDASKLQNEYERLVRGLGQSENTF 252
Query: 180 ETD---VVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPAT 236
E++ +L NPVLP+++LQE VPGNIR AEHF FL RF+EYLK ++ + P
Sbjct: 253 ESEEEAAILGNPVLPEDLLQEAVPGNIRRAEHFTAFLTRFVEYLK-HVKDLTYIDRKPLR 311
Query: 237 FLKD 240
F D
Sbjct: 312 FCAD 315
Score = 146 bits (368), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 129/220 (58%), Gaps = 29/220 (13%)
Query: 636 NLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYE 694
L RK L I Q VS+E+ GK+VD RC LTS+ ++ +A ++P+CDF+E
Sbjct: 78 GLTSRKNLCIHPQ-------VSREKKGKVVDARCRDLTSAWACEKGRADPGSVPLCDFHE 130
Query: 695 KFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIAN 754
K + + GV+++ ++ G + G+CPYF R+ + A
Sbjct: 131 KLGELEPGNLIPRGVWTLEEITAYGHQHGICPYFAVRRMV------------------AT 172
Query: 755 VVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSA 814
VSKEL +S+VVFDEAHNIDNVC++SLS+ + + ++ A +I L+ ++E+K D++
Sbjct: 173 QVSKELLPNSIVVFDEAHNIDNVCIESLSIDLTKGMLDNAGKSIGALDEKIREIKRTDAS 232
Query: 815 KLREEYARLVEGLRDAQSARETD---VVLANPVLPDEILQ 851
KL+ EY RLV GL +++ E++ +L NPVLP+++LQ
Sbjct: 233 KLQNEYERLVRGLGQSENTFESEEEAAILGNPVLPEDLLQ 272
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Query: 591 SVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
SV+RN+G +L++ +VPDG+V FF SYLY+ES+VA+W+D GI+ + K KL+F+ET DA
Sbjct: 385 SVVRNFGTILIEYCKIVPDGIVAFFPSYLYMESIVAAWHDMGILKEVWKYKLIFVETPDA 444
Query: 651 LDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAG 684
+++ S++ E + D ++ S R + G
Sbjct: 445 VET-SIALENYRRACDNGKGAVLLSVARGKVSEG 477
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 56/91 (61%), Gaps = 14/91 (15%)
Query: 465 MPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN--- 521
MPSGTGKT SLLSLIVAY +P + KL+YCSRTVPEIEK + EL RL Y +
Sbjct: 1 MPSGTGKTISLLSLIVAYQLYYP-ERRKLVYCSRTVPEIEKALIELKRLMAYRAAQHRLR 59
Query: 522 ----------EEINMTGLVLSSRKNLCIHSE 542
E + G+ L+SRKNLCIH +
Sbjct: 60 AGLTDNSAPTNEDDFLGVGLTSRKNLCIHPQ 90
>gi|355686448|gb|AER98061.1| excision repair cross-complementing rodent repair deficiency,
complementation group 2 [Mustela putorius furo]
Length = 182
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/164 (56%), Positives = 115/164 (70%), Gaps = 17/164 (10%)
Query: 640 RKLL-FIETQD---------ALDSRS-------VSKERDGKIVDGRCHSLTSSSVRDRHK 682
RKLL F E Q+ AL SR V R GK VDG+CHSLT+S VR +++
Sbjct: 19 RKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVMPLRFGKDVDGKCHSLTASYVRAQYQ 78
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
++P C FYE+FD GR+ PL G+Y++ LK +GR G CPYFLAR +I+HA +VVY
Sbjct: 79 QDPSLPHCRFYEEFDVHGRQVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVY 138
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
SYHYLLDPKIA +VSKELAR +VVVFDEAHNIDNVC+DS+SV +
Sbjct: 139 SYHYLLDPKIAELVSKELARKAVVVFDEAHNIDNVCIDSMSVNL 182
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 102/127 (80%)
Query: 5 RDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMG 64
R GK VDG+CHSLT+S VR +++ ++P C FYE+FD GR+ PL G+Y++ LK +G
Sbjct: 56 RFGKDVDGKCHSLTASYVRAQYQQDPSLPHCRFYEEFDVHGRQVPLPAGIYNLDDLKALG 115
Query: 65 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 124
R G CPYFLAR +I+HA +VVYSYHYLLDPKIA +VSKELAR +VVVFDEAHNIDNVC+
Sbjct: 116 RRQGWCPYFLARYSILHANVVVYSYHYLLDPKIAELVSKELARKAVVVFDEAHNIDNVCI 175
Query: 125 DSLSVRI 131
DS+SV +
Sbjct: 176 DSMSVNL 182
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 40/51 (78%), Gaps = 1/51 (1%)
Query: 493 LLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
L+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 1 LIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 51
>gi|345319470|ref|XP_001519583.2| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like, partial [Ornithorhynchus anatinus]
Length = 226
Score = 179 bits (453), Expect = 8e-42, Method: Composition-based stats.
Identities = 97/184 (52%), Positives = 114/184 (61%), Gaps = 44/184 (23%)
Query: 153 MKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGF 212
+KE D +L EEY RLVEGLR+A +ARETD LANPVLPD ILQE VPG+IRTAEHFVGF
Sbjct: 87 IKETDEQRLHEEYRRLVEGLREAGAARETDAHLANPVLPDAILQEAVPGSIRTAEHFVGF 146
Query: 213 LKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQ 272
L+R +E+LK RLRVQ VQESPA F
Sbjct: 147 LRRLLEFLKWRLRVQHAVQESPAAF----------------------------------- 171
Query: 273 VVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVS 332
L ++ +VCI KPLRFCAERL SLL TLEI++LTDFS L ++ + ATLVS
Sbjct: 172 ---------LGGLAQRVCIPPKPLRFCAERLRSLLHTLEISDLTDFSPLTLLANFATLVS 222
Query: 333 SYTK 336
+YTK
Sbjct: 223 TYTK 226
Score = 65.5 bits (158), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/44 (70%), Positives = 35/44 (79%)
Query: 808 MKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
+KE D +L EEY RLVEGLR+A +ARETD LANPVLPD ILQ
Sbjct: 87 IKETDEQRLHEEYRRLVEGLREAGAARETDAHLANPVLPDAILQ 130
>gi|335310791|ref|XP_003362194.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit, partial [Sus scrofa]
Length = 308
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 81/147 (55%), Positives = 109/147 (74%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE GR+ PL G+Y++ L
Sbjct: 43 VTPLRFGKDVDGKCHSLTASYVRAQYQQDPSLPHCRFYEXXXVHGRQVPLPAGIYNLDDL 102
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
K +GR G CPYFLAR +I+HA +VVYSYHYLL ++VSKELAR +VVVFDEAHNID
Sbjct: 103 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLXXXXXDLVSKELARKAVVVFDEAHNID 162
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLE 147
NVC+DS+SV + RR +++ GN++TL+
Sbjct: 163 NVCIDSMSVNLTRRMLDRCQGNLETLQ 189
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 81/147 (55%), Positives = 109/147 (74%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
V+ R GK VDG+CHSLT+S VR +++ ++P C FYE GR+ PL G+Y++ L
Sbjct: 43 VTPLRFGKDVDGKCHSLTASYVRAQYQQDPSLPHCRFYEXXXVHGRQVPLPAGIYNLDDL 102
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
K +GR G CPYFLAR +I+HA +VVYSYHYLL ++VSKELAR +VVVFDEAHNID
Sbjct: 103 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLXXXXXDLVSKELARKAVVVFDEAHNID 162
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLE 802
NVC+DS+SV + RR +++ GN++TL+
Sbjct: 163 NVCIDSMSVNLTRRMLDRCQGNLETLQ 189
Score = 152 bits (383), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 90/119 (75%), Gaps = 10/119 (8%)
Query: 299 CAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLY 358
CAERL SLL TLEI +L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NPVL+
Sbjct: 200 CAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPVLH 259
Query: 359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM 417
F C+D+SLAIKPVF+RFQ+V+ITSG IL+F PV M +F+MTLAR CL PM
Sbjct: 260 FSCMDASLAIKPVFERFQSVIITSG----------ILDFHPVTMATFTMTLARVCLCPM 308
>gi|149239755|ref|XP_001525753.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449876|gb|EDK44132.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 325
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 132/206 (64%), Gaps = 11/206 (5%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAG-----------ENIPVCDFYEKFDAVGREAP 49
+S+ER G +VD C +T+ ++++ + G E +C F+E + + +
Sbjct: 120 ISRERKGNVVDEMCRRVTNGQLKEKIERGVVTEDMQERDPEKYSLCSFHENLNELDQHDL 179
Query: 50 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 109
+ GVYS L + +++G CPYF R+ I I++YSYHYLLDPKIA+ VS+EL++ S
Sbjct: 180 IPEGVYSFDALIKYCKQIGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIADRVSRELSKDS 239
Query: 110 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 169
+++FDEAHNIDNVC+++LS+ + +++A L + EMK+ DS KL+ EY +LV
Sbjct: 240 IIIFDEAHNIDNVCIEALSLDLTEDALKRATRGANKLADAVDEMKQQDSEKLQNEYEQLV 299
Query: 170 EGLRDAQSARETDVVLANPVLPDEIL 195
EGLR A+ ARE ++ ++NP+LP ++L
Sbjct: 300 EGLRQAEVAREEELFMSNPILPQDLL 325
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 132/206 (64%), Gaps = 11/206 (5%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAG-----------ENIPVCDFYEKFDAVGREAP 704
+S+ER G +VD C +T+ ++++ + G E +C F+E + + +
Sbjct: 120 ISRERKGNVVDEMCRRVTNGQLKEKIERGVVTEDMQERDPEKYSLCSFHENLNELDQHDL 179
Query: 705 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 764
+ GVYS L + +++G CPYF R+ I I++YSYHYLLDPKIA+ VS+EL++ S
Sbjct: 180 IPEGVYSFDALIKYCKQIGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIADRVSRELSKDS 239
Query: 765 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 824
+++FDEAHNIDNVC+++LS+ + +++A L + EMK+ DS KL+ EY +LV
Sbjct: 240 IIIFDEAHNIDNVCIEALSLDLTEDALKRATRGANKLADAVDEMKQQDSEKLQNEYEQLV 299
Query: 825 EGLRDAQSARETDVVLANPVLPDEIL 850
EGLR A+ ARE ++ ++NP+LP ++L
Sbjct: 300 EGLRQAEVAREEELFMSNPILPQDLL 325
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 86/123 (69%), Gaps = 12/123 (9%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M IDDLPV FPY IYPEQYAYM ++KK LD G+C+LEMPSGTGKT SLLSL VAY
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYAYMSDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY------YIKHNEEINMTGLVLSSRKNL 537
+P + K++YCSRT+ EIEK + EL +L ++ Y++ + GL L+SRKNL
Sbjct: 61 MHYP-EHRKIVYCSRTMSEIEKALIELHKLMEFRASALGYVE-----DFRGLGLTSRKNL 114
Query: 538 CIH 540
C++
Sbjct: 115 CLN 117
>gi|443695361|gb|ELT96293.1| hypothetical protein CAPTEDRAFT_129050, partial [Capitella teleta]
Length = 169
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 86/122 (70%), Positives = 97/122 (79%), Gaps = 1/122 (0%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
+D L V+FPY+YIYPEQYAYM ELK+ALDA+GHC LEMPSGTGKT SLLSLIVAYM P
Sbjct: 31 LDGLLVYFPYDYIYPEQYAYMQELKRALDAQGHCALEMPSGTGKTVSLLSLIVAYMKQRP 90
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSEFETR 546
LDVTKL+YCSRTVPE+EKVVEEL L +YY + E + GL LSSRKNLCIH E +
Sbjct: 91 LDVTKLIYCSRTVPELEKVVEELKNLIEYYERETGEPSTLVGLALSSRKNLCIHPELRGQ 150
Query: 547 DD 548
D
Sbjct: 151 RD 152
>gi|443926997|gb|ELU45534.1| DNA repair helicase RAD3 [Rhizoctonia solani AG-1 IA]
Length = 675
Score = 169 bits (429), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 139/439 (31%), Positives = 198/439 (45%), Gaps = 148/439 (33%)
Query: 1 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 58
VSKE+ GK+VD RC LTSS + R+ G N P+C ++E + + E L P
Sbjct: 102 VSKEKKGKVVDARCRDLTSSQAVEKGRNDPG-NHPLCAWHEGLNDM-EEGALIP------ 153
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
A IH +A++ + R++ F
Sbjct: 154 -------------------AGIHT--------------LADISNMGRERTTCPYFT---- 176
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEM-KEADSAKLREEYARLVEGLRDAQS 177
I R + +AV + L L + K D+ +L+EEY +LVEGL++ ++
Sbjct: 177 ------------IRRMKLRRAV--LHDLAKKLTSLIKATDANRLQEEYEKLVEGLQETEN 222
Query: 178 ARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATF 237
R DVV+ANP + ++ +R +G K F+ F
Sbjct: 223 DRAEDVVMANPGV-------LIVWGLRYT--LIGVRKSFL-----------------MIF 256
Query: 238 LKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLR 297
L+ + +TR+RV VV E+P +FL+ + IER+PLR
Sbjct: 257 LR----------------------KQFQTRMRVLHVVAETPLSFLQHLKDITYIERRPLR 294
Query: 298 --FCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKG----------------FA 339
FCAERL SL+RTLE+T + ++SSL + + ATLVS+Y KG F
Sbjct: 295 RVFCAERLQSLIRTLELTQIDEYSSLQKVANFATLVSTYEKGKHIQAALELRSSVNLGFL 354
Query: 340 IIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQP 399
+I+EPF + TVPNP+ +F CLD SLAIKPVF+RF +VVITS T YP
Sbjct: 355 LILEPFEGENTTVPNPIFHFTCLDPSLAIKPVFERFSSVVITSET------YP------- 401
Query: 400 VIMHSFSMTLARPCLLPMV 418
MTL R C LP+V
Sbjct: 402 -------MTLTRNCFLPLV 413
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 70/102 (68%), Gaps = 8/102 (7%)
Query: 448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
M +LK+ LDA GHC+LEMPSGTGKT SLLSLIV+Y +P KL+YCSRTVPEIEK +
Sbjct: 1 MCDLKRTLDATGHCVLEMPSGTGKTVSLLSLIVSYQQFYPTK-RKLIYCSRTVPEIEKAL 59
Query: 508 EELARLFDYYIKHNE-------EINMTGLVLSSRKNLCIHSE 542
EL RL Y I E E TGL L+SRKNLC++ E
Sbjct: 60 SELKRLMAYRISQAETPEQRIKEEAFTGLGLTSRKNLCLNPE 101
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 72/107 (67%), Gaps = 7/107 (6%)
Query: 821 ARLVEGLRDAQSARET-----DVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRDA RE+ D + +L+GKTD+G+MIFADKRFAR+DKRSKL
Sbjct: 523 ARL-EYLRDAYRIRESEFLGFDAMRNAAQCVGRVLRGKTDWGLMIFADKRFARADKRSKL 581
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLS 922
P+WI +Y+T++ +NLST+ A+ SK ++R ++Q E GV+L +
Sbjct: 582 PRWINQYITESASNLSTDMALVQSKLFMRTISQSHDVEQT-GVSLWT 627
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 536 NLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRN 595
+L I FE + + + + C +P V+ + + + S FE R+D SV+RN
Sbjct: 380 SLAIKPVFERFSSVVITSETYPMTLTRNCFLP-LVITRGSDQVAISSRFEVRNDPSVVRN 438
Query: 596 YGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYD 630
+G +L++ +VPDGVV FF SYLY+ES+VA+W+D
Sbjct: 439 FGSILIEYCKIVPDGVVAFFPSYLYMESIVAAWHD 473
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 11/101 (10%)
Query: 536 NLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRN 595
+ I S FE R+D SV+RN+G +L++ +VPDGVV FF SYLY+ES+ D++
Sbjct: 420 QVAISSRFEVRNDPSVVRNFGSILIEYCKIVPDGVVAFFPSYLYMESIVAAWHDMACDNG 479
Query: 596 YGQLLVDIA-CVVPDG----------VVCFFTSYLYLESVV 625
G +L+ +A V +G V+ F Y Y ES +
Sbjct: 480 RGAVLLSVARGKVSEGIDFDHNYGRAVIMFGIPYQYTESRI 520
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 8/88 (9%)
Query: 656 VSKERDGKIVDGRCHSLTSSSV--RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT 713
VSKE+ GK+VD RC LTSS + R+ G N P+C ++E + + A + G++++
Sbjct: 102 VSKEKKGKVVDARCRDLTSSQAVEKGRNDPG-NHPLCAWHEGLNDMEEGALIPAGIHTLA 160
Query: 714 KLKEMGRELGLCPYFLA-----RQAIIH 736
+ MGRE CPYF R+A++H
Sbjct: 161 DISNMGRERTTCPYFTIRRMKLRRAVLH 188
>gi|194382496|dbj|BAG64418.1| unnamed protein product [Homo sapiens]
Length = 127
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L +D L V+FPY+YIYPEQ++YM ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K E++ GL LSSRKNLCIH E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
>gi|312097463|ref|XP_003148983.1| TFIIH basal transcription factor complex helicase subunit [Loa loa]
Length = 374
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/121 (60%), Positives = 99/121 (81%)
Query: 298 FCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVL 357
FCAER ASL RTLE+ +++DFSSLV+IT+ ATLVS+Y +GF I++EP +K+ + L
Sbjct: 1 FCAERFASLTRTLELADISDFSSLVLITNFATLVSTYARGFTIVIEPLDEKSGIGHSCTL 60
Query: 358 YFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPM 417
+ C+D+S+AI+P+F R++TVVITSGTLSPLDMYPKIL+F P +M S SMTLARPC+ P+
Sbjct: 61 HLSCMDASVAIRPIFQRYRTVVITSGTLSPLDMYPKILDFDPAVMASLSMTLARPCIAPL 120
Query: 418 V 418
+
Sbjct: 121 I 121
Score = 106 bits (265), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 75/115 (65%), Gaps = 6/115 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ RE D + + + L+GK+DYG+MIFADKRF+R DK KL
Sbjct: 247 ARL-EYLREQLGIRENDFLTFDAMRQAAQCMGRALRGKSDYGLMIFADKRFSRKDKMGKL 305
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKE 930
P+WIQEY+T NLS EEA ++++W MAQ FT++ LG++LL+ + L EKE
Sbjct: 306 PRWIQEYITPGNVNLSIEEAAIIARKWFPLMAQSFTKDHQLGISLLTEEMLREKE 360
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 17/97 (17%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P +V + + S FE+R+D +VIRNYG L++++ +VPDGVV F
Sbjct: 116 CIAPL-IVSKGNDQVAMTSRFESREDAAVIRNYGSLVLELVSLVPDGVVVFL-------- 166
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKER 660
GIID L K KLLFIET DAL++ S++ E+
Sbjct: 167 -------PGIIDELLKYKLLFIETTDALET-SIALEK 195
Score = 48.1 bits (113), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 13/56 (23%)
Query: 519 KHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFF 574
K N+++ MT S FE+R+D +VIRNYG L++++ +VPDGVV F
Sbjct: 124 KGNDQVAMT-------------SRFESREDAAVIRNYGSLVLELVSLVPDGVVVFL 166
>gi|237843395|ref|XP_002370995.1| excision repair protein rad15, putative [Toxoplasma gondii ME49]
gi|211968659|gb|EEB03855.1| excision repair protein rad15, putative [Toxoplasma gondii ME49]
gi|221502303|gb|EEE28036.1| excision repair protein Rad15, putative [Toxoplasma gondii VEG]
Length = 1065
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 164/305 (53%), Gaps = 59/305 (19%)
Query: 144 QTLEGTLKEMKEADSAKLR--EEYARLVEGLRDAQS------ARETDVVLANPVLPDE-I 194
Q E T E SA +R +E R+ E ++++ A ET +LA+P+LPD+ +
Sbjct: 526 QETERTDGEEAGGGSACVRPEDEGERIREKRKESRDPGRIVVANETLDLLASPLLPDDAL 585
Query: 195 LQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAY 254
L++ VPG+IR AEHFV ++R + YL
Sbjct: 586 LEQAVPGSIRKAEHFVALMRRIVSYL---------------------------------- 611
Query: 255 RYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITN 314
K+ +++ ++ E P +FL + I+ L+F +RL SL TL+IT
Sbjct: 612 ----------KSYIKIYELKSEGPLSFLHMFEKETHIDASLLKFFYDRLKSLFNTLQITE 661
Query: 315 LTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDR 374
+ ++ L ++ TLV++Y +GF +I +P+ + A + +P+L CLD+SLA++PV R
Sbjct: 662 VESYAPLTLVADFCTLVATYCEGFILICDPYPE-AVGLYDPLLQLSCLDASLAMQPVLKR 720
Query: 375 FQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMVRENYAMGLMIDDLPVF 434
FQ++++TSGT+SPL++YPK+LNF PVI SF M+L R C+ P++ A G D +P+
Sbjct: 721 FQSLILTSGTISPLELYPKLLNFVPVITESFPMSLDRNCICPLI---VARG--SDQIPLT 775
Query: 435 FPYEY 439
+EY
Sbjct: 776 SKFEY 780
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 73/94 (77%), Gaps = 1/94 (1%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
ID++ V+FPY++IYPEQYAY+ LK LDAKGH +LEMP+GTGKT +LLSL+ +Y A
Sbjct: 4 FQIDEVTVYFPYDFIYPEQYAYIRALKHTLDAKGHAVLEMPTGTGKTVALLSLLTSYQLA 63
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK 519
HP + K+LYC+RTVPE+EK + EL + DY I+
Sbjct: 64 HP-RLGKILYCTRTVPEMEKALLELKGVIDYRIE 96
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 92/187 (49%), Gaps = 47/187 (25%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLK---------EMGRELGLCPYFLARQAIIHAKI 84
+C +YE D GVY+I +LK + R L CPYFLAR+ + A +
Sbjct: 298 LCAWYENLDRYFAPQFFPAGVYTIEELKIAAGNWRHPLLHRNLPFCPYFLARRLLHIANV 357
Query: 85 VVYSYHYLLDPKIANVV-----------------------SKELAR-------------- 107
VV +Y Y+LDPK++ S R
Sbjct: 358 VVLNYQYILDPKVSQAALLTPLPDGMSSSHTTGGQTRSTYSNPYQRRGFGGVSTPEEVQY 417
Query: 108 -SSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYA 166
SVVVFDEAHNIDNVC+++LSV INR +E A+ N+ L ++E+K+ D+ +LREEY
Sbjct: 418 EGSVVVFDEAHNIDNVCIEALSVNINRSVMEAALRNLSQLAEKIEEVKKEDAERLREEYE 477
Query: 167 RLVEGLR 173
LV G++
Sbjct: 478 NLVRGIK 484
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 92/187 (49%), Gaps = 47/187 (25%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLK---------EMGRELGLCPYFLARQAIIHAKI 739
+C +YE D GVY+I +LK + R L CPYFLAR+ + A +
Sbjct: 298 LCAWYENLDRYFAPQFFPAGVYTIEELKIAAGNWRHPLLHRNLPFCPYFLARRLLHIANV 357
Query: 740 VVYSYHYLLDPKIANVV-----------------------SKELAR-------------- 762
VV +Y Y+LDPK++ S R
Sbjct: 358 VVLNYQYILDPKVSQAALLTPLPDGMSSSHTTGGQTRSTYSNPYQRRGFGGVSTPEEVQY 417
Query: 763 -SSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYA 821
SVVVFDEAHNIDNVC+++LSV INR +E A+ N+ L ++E+K+ D+ +LREEY
Sbjct: 418 EGSVVVFDEAHNIDNVCIEALSVNINRSVMEAALRNLSQLAEKIEEVKKEDAERLREEYE 477
Query: 822 RLVEGLR 828
LV G++
Sbjct: 478 NLVRGIK 484
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 1/103 (0%)
Query: 549 ISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVP 608
+ VI + +D C+ P +V + + L S FE R D++V+RNY LL+D+ VP
Sbjct: 744 VPVITESFPMSLDRNCICPL-IVARGSDQIPLTSKFEYRHDMNVLRNYSNLLIDLCKHVP 802
Query: 609 DGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDAL 651
DG+VCFFTSY Y+ESV++SWY G++ + KL+FIET+D +
Sbjct: 803 DGLVCFFTSYSYMESVLSSWYHSGVLAQVLDYKLIFIETKDVV 845
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 45/60 (75%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+MIFAD R++R DKRSKLP WI ++L + L+TE A+ +++ +LR M+Q
Sbjct: 937 VIRSKNDYGLMIFADARYSRIDKRSKLPPWILKHLDNAHLALNTETAISVARTFLRHMSQ 996
>gi|76156607|gb|AAX27782.2| SJCHGC01374 protein [Schistosoma japonicum]
Length = 226
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/131 (61%), Positives = 96/131 (73%), Gaps = 2/131 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + ID L V+FPYEYIYPEQY YM+ELK+ LDAKGH +LEMPSGTGKT SLLSLIVAYM
Sbjct: 1 MKINIDGLLVYFPYEYIYPEQYHYMIELKRTLDAKGHGVLEMPSGTGKTVSLLSLIVAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEE--INMTGLVLSSRKNLCIHS 541
A P V K +YCSRTVPE+EKV++EL L YY E + G++LSSRKNLCIH
Sbjct: 61 KARPGIVEKFVYCSRTVPELEKVIDELKVLDKYYADETNEKGCGLLGIILSSRKNLCIHR 120
Query: 542 EFETRDDISVI 552
+ + D + +
Sbjct: 121 DVKHAGDGAAV 131
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 632 GIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCD 691
GII L RK L I R V DG VD C LT+S VR A N+ C
Sbjct: 107 GII--LSSRKNLCIH-------RDVKHAGDGAAVDSACFRLTASFVRKNRIADPNVAYCK 157
Query: 692 FYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLAR 731
+YE+FD GR+ P APG+YS+ +K + + + FL +
Sbjct: 158 YYEEFDLNGRDNPFAPGIYSMADIKAYAKNITIALTFLQK 197
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V DG VD C LT+S VR A N+ C +YE+FD GR+ P APG+YS+ +
Sbjct: 122 VKHAGDGAAVDSACFRLTASFVRKNRIADPNVAYCKYYEEFDLNGRDNPFAPGIYSMADI 181
Query: 61 KEMGRELGLCPYFLAR 76
K + + + FL +
Sbjct: 182 KAYAKNITIALTFLQK 197
>gi|221481803|gb|EEE20173.1| excision repair protein Rad15, putative [Toxoplasma gondii GT1]
Length = 1065
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 147/263 (55%), Gaps = 51/263 (19%)
Query: 178 ARETDVVLANPVLPDE-ILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPAT 236
A ET +LA+P+LPD+ +L++ VPG+IR AEHFV ++R + YL
Sbjct: 568 ANETLDLLASPLLPDDALLEQAVPGSIRKAEHFVALMRRIVSYL---------------- 611
Query: 237 FLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPL 296
K+ +++ ++ E P +FL + I+ L
Sbjct: 612 ----------------------------KSYIKIYELKSEGPLSFLHMFEKETHIDASLL 643
Query: 297 RFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPV 356
+F +RL SL TL+IT + ++ L ++ TLV++Y +GF +I +P+ + A + +P+
Sbjct: 644 KFFYDRLKSLFNTLQITEVESYAPLTLVADFCTLVATYCEGFILICDPYPE-AVGLYDPL 702
Query: 357 LYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLP 416
L CLD+SLA++PV RFQ++++TSGT+SPL++YPK+LNF PVI SF M+L R C+ P
Sbjct: 703 LQLSCLDASLAMQPVLKRFQSLILTSGTISPLELYPKLLNFVPVITESFPMSLDRNCICP 762
Query: 417 MVRENYAMGLMIDDLPVFFPYEY 439
++ A G D +P+ +EY
Sbjct: 763 LI---VARG--SDQIPLTSKFEY 780
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 73/94 (77%), Gaps = 1/94 (1%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
ID++ V+FPY++IYPEQYAY+ LK LDAKGH +LEMP+GTGKT +LLSL+ +Y A
Sbjct: 4 FQIDEVTVYFPYDFIYPEQYAYIRALKHTLDAKGHAVLEMPTGTGKTVALLSLLTSYQLA 63
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK 519
HP + K+LYC+RTVPE+EK + EL + DY I+
Sbjct: 64 HP-RLGKILYCTRTVPEMEKALLELKGVIDYRIE 96
Score = 106 bits (264), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 92/187 (49%), Gaps = 47/187 (25%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLK---------EMGRELGLCPYFLARQAIIHAKI 84
+C +YE D GVY+I +LK + R L CPYFLAR+ + A +
Sbjct: 298 LCAWYENLDRYFAPQFFPAGVYTIEELKIAAGNWRHPLLHRNLPFCPYFLARRLLHIANV 357
Query: 85 VVYSYHYLLDPKIANVV-----------------------SKELAR-------------- 107
VV +Y Y+LDPK++ S R
Sbjct: 358 VVLNYQYILDPKVSQAALLTPLPDGMSSSHTTGGQTRSTYSNPYQRRGFGGVSTPEEVQY 417
Query: 108 -SSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYA 166
SVVVFDEAHNIDNVC+++LSV INR +E A+ N+ L ++E+K+ D+ +LREEY
Sbjct: 418 EGSVVVFDEAHNIDNVCIEALSVNINRSVMEAALRNLSQLAEKIEEVKKEDAERLREEYE 477
Query: 167 RLVEGLR 173
LV G++
Sbjct: 478 NLVRGIK 484
Score = 106 bits (264), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 92/187 (49%), Gaps = 47/187 (25%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLK---------EMGRELGLCPYFLARQAIIHAKI 739
+C +YE D GVY+I +LK + R L CPYFLAR+ + A +
Sbjct: 298 LCAWYENLDRYFAPQFFPAGVYTIEELKIAAGNWRHPLLHRNLPFCPYFLARRLLHIANV 357
Query: 740 VVYSYHYLLDPKIANVV-----------------------SKELAR-------------- 762
VV +Y Y+LDPK++ S R
Sbjct: 358 VVLNYQYILDPKVSQAALLTPLPDGMSSSHTTGGQTRSTYSNPYQRRGFGGVSTPEEVQY 417
Query: 763 -SSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYA 821
SVVVFDEAHNIDNVC+++LSV INR +E A+ N+ L ++E+K+ D+ +LREEY
Sbjct: 418 EGSVVVFDEAHNIDNVCIEALSVNINRSVMEAALRNLSQLAEKIEEVKKEDAERLREEYE 477
Query: 822 RLVEGLR 828
LV G++
Sbjct: 478 NLVRGIK 484
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 1/103 (0%)
Query: 549 ISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVP 608
+ VI + +D C+ P +V + + L S FE R D++V+RNY LL+D+ VP
Sbjct: 744 VPVITESFPMSLDRNCICPL-IVARGSDQIPLTSKFEYRHDMNVLRNYSNLLIDLCKHVP 802
Query: 609 DGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDAL 651
DG+VCFFTSY Y+ESV++SWY G++ + KL+FIET+D +
Sbjct: 803 DGLVCFFTSYSYMESVLSSWYHSGVLAQVLDYKLIFIETKDVV 845
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 45/60 (75%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+MIFAD R++R DKRSKLP WI ++L + L+TE A+ +++ +LR M+Q
Sbjct: 937 VIRSKNDYGLMIFADARYSRIDKRSKLPPWILKHLDNAHLALNTETAISVARTFLRHMSQ 996
>gi|124507219|ref|XP_001352206.1| DNA excision-repair helicase, putative [Plasmodium falciparum 3D7]
gi|23505236|emb|CAD52016.1| DNA excision-repair helicase, putative [Plasmodium falciparum 3D7]
Length = 1056
Score = 154 bits (390), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 130/232 (56%), Gaps = 46/232 (19%)
Query: 188 PVLPDEILQEVV-PGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPA 246
P+L ++I++ VV PGNIR +EHF+ ++ + YLK + + + E P +FL
Sbjct: 603 PLLMEDIIKNVVIPGNIRKSEHFLNLMRIVVVYLKKYINIYDITSEGPLSFL-------- 654
Query: 247 PSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASL 306
Y F + L T ++C +RL SL
Sbjct: 655 ---------YKFEKDTKLDTSF---------------------------FKYCFDRLKSL 678
Query: 307 LRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSL 366
L L+I N+ D+SSL ++ + TL+ +Y KGF II EP+ + A + +P++ F CLDSS+
Sbjct: 679 LNNLQIVNIEDYSSLNIVCNFCTLLGNYFKGFIIICEPYPE-ATGIYDPLIQFACLDSSI 737
Query: 367 AIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
A+K V ++++++++TSGT++PL++YPK+LNF+ V+ SF M+ R C+ P++
Sbjct: 738 AMKTVINKYKSIILTSGTITPLELYPKLLNFKTVLTASFPMSFDRNCVCPLI 789
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
+DD+ +FFPY+YIYPEQYAYM LKK LD++GHC+LEMP+GTGKT ++ SLI +Y H
Sbjct: 6 LDDVEIFFPYDYIYPEQYAYMKYLKKTLDSEGHCVLEMPTGTGKTVAIFSLITSYQ-YHK 64
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYI 518
D K ++C+RTV E+EK + EL ++ Y I
Sbjct: 65 KDEGKFIFCTRTVAEMEKSLIELKKVIQYRI 95
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 103/178 (57%), Gaps = 17/178 (9%)
Query: 23 RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRE--------LGLCPYFL 74
R+ + +NI +C +YE + + PGVY+I LK + + + +CPYF
Sbjct: 259 RNSLEEYDNIGLCGYYENYKKEFLYDLIKPGVYTIEDLKVLCKNYKNKENVNVPICPYFC 318
Query: 75 ARQAIIHAKIVVYSYHYLLDPKIANVV--SKELARS-------SVVVFDEAHNIDNVCVD 125
A++ I +K+++ +Y Y++DPK++ + K++ ++ ++VFDEAHNID+VC++
Sbjct: 319 AKKIIEISKVIILNYQYVIDPKVSKALFSWKDMNKNVHLKNKNDIIVFDEAHNIDSVCLE 378
Query: 126 SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDV 183
+LSV I+R + KA NI L +++ K + KL+EE +++E ++ + + +V
Sbjct: 379 ALSVNIDRNILNKASMNITKLMKKIEQSKMLNEQKLKEECNKILEKIKLQKCNQSLNV 436
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 103/178 (57%), Gaps = 17/178 (9%)
Query: 678 RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRE--------LGLCPYFL 729
R+ + +NI +C +YE + + PGVY+I LK + + + +CPYF
Sbjct: 259 RNSLEEYDNIGLCGYYENYKKEFLYDLIKPGVYTIEDLKVLCKNYKNKENVNVPICPYFC 318
Query: 730 ARQAIIHAKIVVYSYHYLLDPKIANVV--SKELARS-------SVVVFDEAHNIDNVCVD 780
A++ I +K+++ +Y Y++DPK++ + K++ ++ ++VFDEAHNID+VC++
Sbjct: 319 AKKIIEISKVIILNYQYVIDPKVSKALFSWKDMNKNVHLKNKNDIIVFDEAHNIDSVCLE 378
Query: 781 SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDV 838
+LSV I+R + KA NI L +++ K + KL+EE +++E ++ + + +V
Sbjct: 379 ALSVNIDRNILNKASMNITKLMKKIEQSKMLNEQKLKEECNKILEKIKLQKCNQSLNV 436
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Query: 561 DIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLY 620
D CV P +V + + L S F R+D+SVI+NYG LLVD+ +PDG+V +F SY+Y
Sbjct: 781 DRNCVCP-LIVTKGSDLIPLSSQFSLRNDLSVIKNYGILLVDMCKCIPDGIVAYFPSYIY 839
Query: 621 LESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+E V++SWY+ G+I N+ + KL+FIET+D + +
Sbjct: 840 MEQVISSWYELGVIANILEYKLIFIETKDIVST 872
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
I++ K DYGIMIF+D R+A+ DK++KLP WI + + + NL+ AV +SK++L M+Q
Sbjct: 962 IIRNKKDYGIMIFSDIRYAKHDKKNKLPPWIIKCMDISNINLTVTTAVDISKQFLLNMSQ 1021
Query: 909 PFTREDMLGVALLSL 923
+ ++ L L
Sbjct: 1022 EYRETGQTKISPLML 1036
>gi|18026950|gb|AAL55708.1| RAD3-like DNA helicase [Plasmodium falciparum]
Length = 1056
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 130/232 (56%), Gaps = 46/232 (19%)
Query: 188 PVLPDEILQEVV-PGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPA 246
P+L ++I++ VV PGNIR +EHF+ ++ + YLK + + + E P +FL
Sbjct: 603 PLLMEDIIKNVVIPGNIRKSEHFLNLMRIVVVYLKKYINIYDITSEGPLSFL-------- 654
Query: 247 PSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASL 306
Y F + L T ++C +RL SL
Sbjct: 655 ---------YKFEKDTKLDTSF---------------------------FKYCFDRLKSL 678
Query: 307 LRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSL 366
L L+I N+ D+SSL ++ + TL+ +Y KGF II EP+ + A + +P++ F CLDSS+
Sbjct: 679 LNNLQIVNIEDYSSLNIVCNFCTLLGNYFKGFIIICEPYPE-ATGIYDPLIQFACLDSSI 737
Query: 367 AIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
A+K V ++++++++TSGT++PL++YPK+LNF+ V+ SF M+ R C+ P++
Sbjct: 738 AMKTVINKYKSIILTSGTITPLELYPKLLNFKTVLTASFPMSFDRNCVCPLI 789
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
+DD+ +FFPY+YIYPEQYAYM LKK LD++GHC+LEMP+GTGKT ++ SLI +Y H
Sbjct: 6 LDDVEIFFPYDYIYPEQYAYMKYLKKTLDSEGHCVLEMPTGTGKTVAIFSLITSYQ-YHK 64
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYI 518
D K ++C+RTV E+EK + EL ++ Y I
Sbjct: 65 KDEGKFIFCTRTVAEMEKSLIELKKVIQYRI 95
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 103/178 (57%), Gaps = 17/178 (9%)
Query: 23 RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRE--------LGLCPYFL 74
R+ + +NI +C +YE + + PGVY+I LK + + + +CPYF
Sbjct: 259 RNSLEEYDNIGLCGYYENYKKEFLYDLIKPGVYTIEDLKVLCKNYKNKENVNVPICPYFC 318
Query: 75 ARQAIIHAKIVVYSYHYLLDPKIANVV--SKELARS-------SVVVFDEAHNIDNVCVD 125
A++ I +K+++ +Y Y++DPK++ + K++ ++ ++VFDEAHNID+VC++
Sbjct: 319 AKKIIEISKVIILNYQYVIDPKVSKALFSWKDMNKNVHLKNKNDIIVFDEAHNIDSVCLE 378
Query: 126 SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDV 183
+LSV I+R + KA NI L +++ K + KL+EE +++E ++ + + +V
Sbjct: 379 ALSVNIDRNILNKASMNITKLMKKIEQSKMLNEQKLKEECNKILEKIKLQKCNQSLNV 436
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 103/178 (57%), Gaps = 17/178 (9%)
Query: 678 RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRE--------LGLCPYFL 729
R+ + +NI +C +YE + + PGVY+I LK + + + +CPYF
Sbjct: 259 RNSLEEYDNIGLCGYYENYKKEFLYDLIKPGVYTIEDLKVLCKNYKNKENVNVPICPYFC 318
Query: 730 ARQAIIHAKIVVYSYHYLLDPKIANVV--SKELARS-------SVVVFDEAHNIDNVCVD 780
A++ I +K+++ +Y Y++DPK++ + K++ ++ ++VFDEAHNID+VC++
Sbjct: 319 AKKIIEISKVIILNYQYVIDPKVSKALFSWKDMNKNVHLKNKNDIIVFDEAHNIDSVCLE 378
Query: 781 SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDV 838
+LSV I+R + KA NI L +++ K + KL+EE +++E ++ + + +V
Sbjct: 379 ALSVNIDRNILNKASMNITKLMKKIEQSKMLNEQKLKEECNKILEKIKLQKCNQSLNV 436
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Query: 561 DIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLY 620
D CV P +V + + L S F R+D+SVI+NYG LLVD+ +PDG+V +F SY+Y
Sbjct: 781 DRNCVCP-LIVTKGSDLIPLSSQFSLRNDLSVIKNYGILLVDMCKCIPDGIVAYFPSYIY 839
Query: 621 LESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+E V++SWY+ G+I N+ + KL+FIET+D + +
Sbjct: 840 MEQVISSWYELGVIANILEYKLIFIETKDIVST 872
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
I++ K DYGIMIF+D R+A+ DK++KLP WI + + + NL+ AV +SK++L M+Q
Sbjct: 962 IIRNKKDYGIMIFSDIRYAKHDKKNKLPPWIIKCMDISNINLTVTTAVDISKQFLLNMSQ 1021
Query: 909 PF 910
+
Sbjct: 1022 EY 1023
>gi|70952870|ref|XP_745573.1| DNA excision-repair helicase [Plasmodium chabaudi chabaudi]
gi|56525940|emb|CAH78123.1| DNA excision-repair helicase, putative [Plasmodium chabaudi
chabaudi]
Length = 970
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 129/232 (55%), Gaps = 46/232 (19%)
Query: 188 PVLPDEILQEVV-PGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPA 246
P+L ++I++ VV PGNIR +EHF+ ++ + YLK + + +V E P +FL
Sbjct: 518 PLLMEDIIKNVVMPGNIRKSEHFLNLMRIVVVYLKKYINIYEVTSEGPLSFL-------- 569
Query: 247 PSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASL 306
+ E+ K ++ ++ +RL SL
Sbjct: 570 -----------YKCEKDTK-------------------------LDTSFFKYSFDRLKSL 593
Query: 307 LRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSL 366
L L++ + D+S+L V+ + TL+ +Y KGF II EP+ + A + +PV+ F CLDSS+
Sbjct: 594 LNALQVVDTDDYSALNVVCNFCTLIGNYFKGFIIICEPYPE-ATGIYDPVIQFACLDSSI 652
Query: 367 AIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
A+K V +R+++VV+TSGT++PL++YPK+LNF V+ SF M+ R C+ P++
Sbjct: 653 AMKSVLNRYKSVVLTSGTITPLELYPKLLNFSTVLTASFPMSFDRNCVCPLI 704
Score = 109 bits (273), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 70/91 (76%), Gaps = 2/91 (2%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
+DDL +FFPY+YIYPEQYAYM LK LD++GHC+LEMP+GTGKT ++ SLI +Y +
Sbjct: 6 LDDLEIFFPYDYIYPEQYAYMKYLK-TLDSEGHCVLEMPTGTGKTVAIFSLITSYQ-YYK 63
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYI 518
D +K ++C+RTV E+EK + EL ++ +Y I
Sbjct: 64 NDDSKFIFCTRTVAEMEKSLIELKKVINYRI 94
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 97/162 (59%), Gaps = 16/162 (9%)
Query: 31 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELG--------LCPYFLARQAIIHA 82
++ +C ++E + + PGVY+I +LK + + +CPYF A++ I A
Sbjct: 231 DLGLCGYFENYKKDFVYELIEPGVYTIEELKTLCKNYKNRENMNAPICPYFCAKKIIEIA 290
Query: 83 KIVVYSYHYLLDPKIANVV--SKEL------ARSSVVVFDEAHNIDNVCVDSLSVRINRR 134
K++V +Y Y++DPK++ + K++ ++ ++VFDEAHNID+VC+++LSV I+R
Sbjct: 291 KVIVLNYQYIIDPKVSKSIFLGKDINNRVNYKKNDIIVFDEAHNIDSVCLEALSVNIDRS 350
Query: 135 TIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQ 176
+ KA NI TL +++ + + KLREE ++++ ++ +
Sbjct: 351 ILNKASMNITTLFKKIEKSRIVNEDKLREECYKILKKIKSGK 392
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 97/162 (59%), Gaps = 16/162 (9%)
Query: 686 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELG--------LCPYFLARQAIIHA 737
++ +C ++E + + PGVY+I +LK + + +CPYF A++ I A
Sbjct: 231 DLGLCGYFENYKKDFVYELIEPGVYTIEELKTLCKNYKNRENMNAPICPYFCAKKIIEIA 290
Query: 738 KIVVYSYHYLLDPKIANVV--SKEL------ARSSVVVFDEAHNIDNVCVDSLSVRINRR 789
K++V +Y Y++DPK++ + K++ ++ ++VFDEAHNID+VC+++LSV I+R
Sbjct: 291 KVIVLNYQYIIDPKVSKSIFLGKDINNRVNYKKNDIIVFDEAHNIDSVCLEALSVNIDRS 350
Query: 790 TIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQ 831
+ KA NI TL +++ + + KLREE ++++ ++ +
Sbjct: 351 ILNKASMNITTLFKKIEKSRIVNEDKLREECYKILKKIKSGK 392
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Query: 561 DIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLY 620
D CV P +V + + L S + R+D++VI+NYG LLV++ +PDG++ +F SY+Y
Sbjct: 696 DRNCVCP-LIVTKSSDLIPLSSQYSLRNDLNVIKNYGFLLVEMCKNIPDGIISYFPSYIY 754
Query: 621 LESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+E V+++WY+ GII N+ + KL+FIET+D + +
Sbjct: 755 MEHVMSTWYELGIISNILEYKLIFIETKDIVST 787
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
I++ K DYGIMIF+D R+AR+DK+ KLP WI + + + NL+ V +SK++L M+Q
Sbjct: 876 IIRNKKDYGIMIFSDIRYARNDKKGKLPPWIIKCMDVSNINLTIGAGVSISKKFLLNMSQ 935
Query: 909 PFTREDMLGVA 919
+ D ++
Sbjct: 936 EYKETDQTKIS 946
>gi|71994594|ref|NP_001022900.1| Protein Y50D7A.11 [Caenorhabditis elegans]
gi|351059426|emb|CCD73798.1| Protein Y50D7A.11 [Caenorhabditis elegans]
Length = 197
Score = 147 bits (371), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/118 (59%), Positives = 91/118 (77%), Gaps = 1/118 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M L ID L V FPY+Y+YPEQ YM E+KKALDA+GH LLEMPSGTGKT SLLSL++AYM
Sbjct: 1 MQLDIDGLKVLFPYDYVYPEQVLYMKEVKKALDARGHGLLEMPSGTGKTVSLLSLVLAYM 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIH 540
++P + KL+YCSRT+PEIEK VEE+ L+DY+ K + + + +S+RKNLC++
Sbjct: 61 ISYPDKLDKLVYCSRTIPEIEKCVEEMKVLYDYWEKETGQPVAKITVAMSARKNLCVN 118
Score = 46.2 bits (108), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
V+ R G VD C LT+SS R + + CD++E F+A + P+ GV+++ K+
Sbjct: 121 VAALRFGNTVDSACQKLTASSARQKRAEDPTLEACDYFENFEA--KSVPMQNGVWNLVKI 178
Query: 61 KEM 63
E
Sbjct: 179 CEF 181
Score = 46.2 bits (108), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
V+ R G VD C LT+SS R + + CD++E F+A + P+ GV+++ K+
Sbjct: 121 VAALRFGNTVDSACQKLTASSARQKRAEDPTLEACDYFENFEA--KSVPMQNGVWNLVKI 178
Query: 716 KEM 718
E
Sbjct: 179 CEF 181
>gi|297716208|ref|XP_002834429.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like, partial [Pongo abelii]
Length = 127
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/110 (61%), Positives = 88/110 (80%)
Query: 135 TIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEI 194
T+++ GN++TL+ T+ +KE D +LR+EY RLVEGLR+A ARETD LANPVLPDE+
Sbjct: 10 TLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASVARETDAHLANPVLPDEV 69
Query: 195 LQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSK 244
LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP FL ++ +
Sbjct: 70 LQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQR 119
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 49/62 (79%)
Query: 790 TIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEI 849
T+++ GN++TL+ T+ +KE D +LR+EY RLVEGLR+A ARETD LANPVLPDE+
Sbjct: 10 TLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASVARETDAHLANPVLPDEV 69
Query: 850 LQ 851
LQ
Sbjct: 70 LQ 71
>gi|68073281|ref|XP_678555.1| DNA excision-repair helicase [Plasmodium berghei strain ANKA]
gi|56499060|emb|CAH98515.1| DNA excision-repair helicase, putative [Plasmodium berghei]
Length = 528
Score = 147 bits (370), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 130/232 (56%), Gaps = 46/232 (19%)
Query: 188 PVLPDEILQEVV-PGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPA 246
P+L ++I++ VV PGNIR +EHF+ ++ + YLK + + +V E P +FL
Sbjct: 75 PLLMEDIIKNVVMPGNIRKSEHFLNLMRIIVVYLKKYINIYEVTSEGPLSFL-------- 126
Query: 247 PSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASL 306
+ E+ K ++ ++ +RL SL
Sbjct: 127 -----------YKCEKDTK-------------------------LDTSFFKYSFDRLKSL 150
Query: 307 LRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSL 366
L TL++ + D+S+L ++ + TL+ +Y KGF II EP+ + A + +PV+ F CLDSS+
Sbjct: 151 LNTLQVVDTDDYSALNIVCNFCTLIGNYFKGFIIICEPYPE-ATGIYDPVIQFACLDSSI 209
Query: 367 AIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
A+K V +R++++V+TSGT++PL++YPK+LNF V+ SF M+ R C+ P++
Sbjct: 210 AMKSVLNRYKSIVLTSGTITPLELYPKLLNFSTVLTASFPMSFDRTCVCPLI 261
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Query: 561 DIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLY 620
D CV P +V + + L S + R+D++VI+NYG LLV++ +PDG++ +F SY+Y
Sbjct: 253 DRTCVCP-LIVTKSSDLIPLSSQYSLRNDLNVIKNYGFLLVEMCKNIPDGIISYFPSYIY 311
Query: 621 LESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+E V+++WY+ GII N+ + KL+FIET+D + +
Sbjct: 312 MEHVMSTWYELGIISNILEYKLIFIETKDIVST 344
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 48/71 (67%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
I++ K DYGIMIF+D R+ R+DK+SKLP WI + + + TNL+ +V +SK++L M+Q
Sbjct: 434 IIRNKKDYGIMIFSDIRYTRNDKKSKLPPWIIKCMDISNTNLTIGASVNISKKFLLNMSQ 493
Query: 909 PFTREDMLGVA 919
+ D ++
Sbjct: 494 EYKETDQTKIS 504
>gi|82597077|ref|XP_726529.1| RAD3-like DNA helicase [Plasmodium yoelii yoelii 17XNL]
gi|23481970|gb|EAA18094.1| RAD3-like DNA helicase-related [Plasmodium yoelii yoelii]
Length = 1032
Score = 146 bits (368), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 128/232 (55%), Gaps = 46/232 (19%)
Query: 188 PVLPDEILQEVV-PGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPA 246
P+L ++I++ +V PGNIR +EHF+ ++ + YLK + + +V E P +FL
Sbjct: 579 PLLMEDIIKNIVMPGNIRKSEHFLNLMRIVVVYLKKYINIYEVTSEGPLSFL-------- 630
Query: 247 PSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASL 306
Y + L T ++ +RL +L
Sbjct: 631 ---------YKCEKDTKLDTSF---------------------------FKYSFDRLKNL 654
Query: 307 LRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSL 366
L TL++ + D+++L ++ + TL+ +Y KGF II EP+ + A + +PV+ F CLDSS+
Sbjct: 655 LNTLQVVDTDDYAALNIVCNFCTLIGNYFKGFIIICEPYPE-ATGIYDPVIQFACLDSSI 713
Query: 367 AIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
A+K V +R++++++TSGT++PL++YPK+LNF V+ SF M+ R C+ P++
Sbjct: 714 AMKSVLNRYKSIILTSGTITPLELYPKLLNFSTVLTASFPMSFDRNCVCPLI 765
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 71/91 (78%), Gaps = 1/91 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
+D+L +FFPY+YIYPEQYAYM LKK LD++GHC+LEMP+GTGKT ++ SLI +Y +
Sbjct: 6 LDNLEIFFPYDYIYPEQYAYMKYLKKTLDSEGHCVLEMPTGTGKTVAIFSLITSYQ-YYK 64
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYI 518
D +K ++C+RTV E+EK + EL ++ +Y I
Sbjct: 65 NDNSKFIFCTRTVAEMEKSLIELKKVINYRI 95
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 97/164 (59%), Gaps = 16/164 (9%)
Query: 31 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELG--------LCPYFLARQAIIHA 82
++ +C ++E + + PGVY+I +LKE+ + +CPYF A++ I A
Sbjct: 279 DLGLCGYFENYKKNFVYELIEPGVYTIEELKEICKNYKNSENINTPICPYFCAKKIIEIA 338
Query: 83 KIVVYSYHYLLDPKIANVV--SKEL------ARSSVVVFDEAHNIDNVCVDSLSVRINRR 134
K+VV +Y Y++DPK++ + K++ ++ ++VFDEAHNID+VC+++LSV I+R
Sbjct: 339 KVVVLNYQYIIDPKVSKSIFLGKDINNRVNYKKNDIIVFDEAHNIDSVCLEALSVNIDRS 398
Query: 135 TIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
+ KA NI TL +++ + + KL+EE ++ ++ + A
Sbjct: 399 ILNKATMNITTLFKKIEKSRIVNENKLKEECYNILNKIKSGKEA 442
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 97/164 (59%), Gaps = 16/164 (9%)
Query: 686 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELG--------LCPYFLARQAIIHA 737
++ +C ++E + + PGVY+I +LKE+ + +CPYF A++ I A
Sbjct: 279 DLGLCGYFENYKKNFVYELIEPGVYTIEELKEICKNYKNSENINTPICPYFCAKKIIEIA 338
Query: 738 KIVVYSYHYLLDPKIANVV--SKEL------ARSSVVVFDEAHNIDNVCVDSLSVRINRR 789
K+VV +Y Y++DPK++ + K++ ++ ++VFDEAHNID+VC+++LSV I+R
Sbjct: 339 KVVVLNYQYIIDPKVSKSIFLGKDINNRVNYKKNDIIVFDEAHNIDSVCLEALSVNIDRS 398
Query: 790 TIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
+ KA NI TL +++ + + KL+EE ++ ++ + A
Sbjct: 399 ILNKATMNITTLFKKIEKSRIVNENKLKEECYNILNKIKSGKEA 442
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Query: 561 DIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLY 620
D CV P +V + + L S + R+D++VI+NYG LLV++ +PDG++ +F SY+Y
Sbjct: 757 DRNCVCP-LIVTKSSDLIPLSSQYSLRNDLNVIKNYGFLLVEMCKNIPDGIISYFPSYIY 815
Query: 621 LESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+E V+++WY+ GII N+ + KL+FIET+D + +
Sbjct: 816 MEHVMSTWYELGIISNILEYKLIFIETKDIVST 848
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
I++ K DYGIMIF+D R+ R+DK+ KLP WI + + + TNL+ V +SK++L M+Q
Sbjct: 938 IIRNKKDYGIMIFSDIRYTRNDKKGKLPPWIIKCMDVSNTNLTIGAGVNISKKFLLNMSQ 997
Query: 909 PFTREDMLGVALLSL 923
+ D ++ + L
Sbjct: 998 EYKETDQTKISQIIL 1012
>gi|312283017|dbj|BAJ34374.1| unnamed protein product [Thellungiella halophila]
Length = 376
Score = 143 bits (360), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 90/125 (72%), Gaps = 5/125 (4%)
Query: 309 TLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAI 368
TLEIT+ DF + + ATLV +Y +GF+II+EP+ ++ P +P+P+L C D+SLAI
Sbjct: 3 TLEITDTDDFLPIQTVCDFATLVGTYARGFSIIIEPYDERMPHIPDPILQLSCHDASLAI 62
Query: 369 KPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMVRENYAMGLMI 428
KPVFDRFQ+VVITSGTLSP+D+YP++L+F PV+ SF M++ R C+ PMV +
Sbjct: 63 KPVFDRFQSVVITSGTLSPIDLYPRLLSFNPVVSRSFKMSMTRDCICPMVLTRGS----- 117
Query: 429 DDLPV 433
D LPV
Sbjct: 118 DQLPV 122
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 6/114 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD +E D + + + +++ K DYG+MIFADKR++R DKRSKL
Sbjct: 253 ARL-EYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKL 311
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEK 929
P WI +L D NLST+ A+ +++ +LR+MAQP+ + +G L + LEK
Sbjct: 312 PGWILSHLRDAHLNLSTDMAIHIAREFLRKMAQPYDKAGTMGRKTLLTQEDLEK 365
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C+ P V+ + L + + F+ R D V+RNYG+ LV++ +VPDGVVCFF SY Y++
Sbjct: 107 CICP-MVLTRGSDQLPVSTKFDMRSDPGVVRNYGKFLVEMVSIVPDGVVCFFVSYSYMDG 165
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
++A+W + GI+ + ++KL+FIETQD +++
Sbjct: 166 IIATWNETGILKEIMQQKLVFIETQDVVET 195
>gi|67466685|ref|XP_649489.1| DNA repair helicase [Entamoeba histolytica HM-1:IMSS]
gi|56465941|gb|EAL44103.1| DNA repair helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449708315|gb|EMD47798.1| DNA repair helicase rad3/xpD, putative [Entamoeba histolytica KU27]
Length = 788
Score = 143 bits (360), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 108/392 (27%), Positives = 185/392 (47%), Gaps = 73/392 (18%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
+C +Y + E P+ G I +L + G++ CPYF +R+ + +V +Y+Y+L
Sbjct: 142 LCPYYHDIED---EIPIVAG---IDELVQFGKQHRRCPYFCSRKNFYKSPFIVCTYNYIL 195
Query: 94 DPKIANVVSKELA--RSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLK 151
DPK NV ++ +++VFDEAHN+DN+ VD+ ++ ++ TIE A ++ L L
Sbjct: 196 DPKEENVTVGKMIDLDQTLLVFDEAHNVDNIVVDAQTLTLSLETIELATISLARLTKLLS 255
Query: 152 EMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ---------EVVPGN 202
EA L EY RLVEGLR +S ++ P +E + +V+PG
Sbjct: 256 --VEASKKPLENEYKRLVEGLR--RSELTNNIEEGEPYFYNEKKKTPEGDIDYDKVIPGT 311
Query: 203 IRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEE 262
R++ FV +KR + + + +L E+P
Sbjct: 312 FRSSSQFVLLMKRIVNFFREKL------HEAPT--------------------------- 338
Query: 263 HLKTRLRVQQVVQESPATFLKDISSKVC----IERKPLRFCAERLASLLRTL--EITNLT 316
+ QQ ++E + +KDI + +C + + ++F RL L++TL E
Sbjct: 339 ------KKQQRIKEQHSIQVKDIVTGLCDSSVLTPEIIKFIPNRLHLLIQTLGDEYGGRQ 392
Query: 317 D-------FSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIK 369
D + +L ++ A L+ S +GF+ + + + VL C+D++ AI+
Sbjct: 393 DVKGDSFYYDALYLVADFAALLCSSQEGFSYVPDVVKIDKDDYYHSVLNLVCVDAANAIQ 452
Query: 370 PVFDRFQTVVITSGTLSPLDMYPKILNFQPVI 401
P+ +RF ++V TSGTLSPL Y IL + V+
Sbjct: 453 PILNRFHSIVFTSGTLSPLKTYINILGLKNVV 484
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 82/145 (56%), Gaps = 10/145 (6%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
+C +Y + E P+ G I +L + G++ CPYF +R+ + +V +Y+Y+L
Sbjct: 142 LCPYYHDIED---EIPIVAG---IDELVQFGKQHRRCPYFCSRKNFYKSPFIVCTYNYIL 195
Query: 749 DPKIANVVSKELA--RSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLK 806
DPK NV ++ +++VFDEAHN+DN+ VD+ ++ ++ TIE A ++ L L
Sbjct: 196 DPKEENVTVGKMIDLDQTLLVFDEAHNVDNIVVDAQTLTLSLETIELATISLARLTKLLS 255
Query: 807 EMKEADSAKLREEYARLVEGLRDAQ 831
EA L EY RLVEGLR ++
Sbjct: 256 --VEASKKPLENEYKRLVEGLRRSE 278
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 70/122 (57%), Gaps = 16/122 (13%)
Query: 423 AMGLMIDDLPVFFPYEYIYPEQYAYMVELKKAL-DAKG----HCLLEMPSGTGKTTSLLS 477
A+ ++ + + FPY++IYPEQY ++ + + D K ++EM +G+GKT S+++
Sbjct: 10 ALDFSVNGIEIHFPYQFIYPEQYQFIKTVTSGVTDNKKPPHKQIIIEMGTGSGKTVSIIT 69
Query: 478 LIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNL 537
++ +++ +YC+RT+ EI+++ EL +L ++ +VL+SR +L
Sbjct: 70 AAKGLLDNQGSNISHTIYCTRTIDEIKRIFNELTKL-----------SIPSIVLASRAHL 118
Query: 538 CI 539
C+
Sbjct: 119 CL 120
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 52/76 (68%)
Query: 578 LYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNL 637
L L S F + D ++ +YG+L+V+++ VPDGV+CFF SY Y+ ++ W + I +++
Sbjct: 531 LILSSQFFYKADRLILHSYGKLIVELSKTVPDGVLCFFPSYAYMNICISYWNEMKIFESI 590
Query: 638 QKRKLLFIETQDALDS 653
+ KL+FIE+++A ++
Sbjct: 591 AQNKLIFIESKNAYET 606
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 56/87 (64%), Gaps = 6/87 (6%)
Query: 850 LQGKTDYGIMIFADKRFARSDK--RSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMA 907
L+GK DY ++I+ADKR+ +D+ ++ +P+WI + + +LS ++++ L+K +L +M+
Sbjct: 697 LRGKNDYTVVIYADKRYKINDRNVKASMPQWILDAIQKRYIDLSADQSIVLAKEFLMKMS 756
Query: 908 QPFTR----EDMLGVALLSLDQLLEKE 930
F E+M+G L +LD + +++
Sbjct: 757 YSFDTQFPIEEMIGKTLWTLDNIRKEQ 783
>gi|221054960|ref|XP_002258619.1| dna excision-repair helicase [Plasmodium knowlesi strain H]
gi|193808688|emb|CAQ39391.1| dna excision-repair helicase, putative [Plasmodium knowlesi strain
H]
Length = 1017
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 133/233 (57%), Gaps = 46/233 (19%)
Query: 187 NPVLPDEILQE-VVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKP 245
+P+L ++I++ V+PG+IR +EHF+ ++ + YLK
Sbjct: 563 SPILMEDIVRNAVIPGHIRKSEHFLNLMRIVVMYLK------------------------ 598
Query: 246 APSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLAS 305
+Y+ + ++ E P +FL + ++ +FC +RL S
Sbjct: 599 ---------KYV-----------NIYEITSEGPLSFLYKCERETKLDTSFFKFCFDRLKS 638
Query: 306 LLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSS 365
+L +L+I N+ ++S+L ++ + TL+ SY +GF II EP+ + A + +PV+ F CLDSS
Sbjct: 639 ILNSLQIVNVDEYSALNIVCNFCTLLGSYFQGFIIICEPYPE-ATGIYDPVIQFACLDSS 697
Query: 366 LAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
+A+K V +++++VV+TSGT++PL++YPK+LNF+ V+ SF ++ R C+ P++
Sbjct: 698 IAMKSVINKYKSVVLTSGTITPLELYPKLLNFKTVLTASFPISFDRNCVCPLI 750
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 67/89 (75%), Gaps = 1/89 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
+DDL VFFPY+YIYPEQYAYM LKK LD++GHC+LEMP+GTGKT ++ SLI +Y
Sbjct: 6 LDDLEVFFPYDYIYPEQYAYMRYLKKTLDSEGHCVLEMPTGTGKTVAIFSLITSYQYKKN 65
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLFDY 516
D K ++C+RTV E+EK + EL ++ Y
Sbjct: 66 -DDGKFIFCTRTVAEMEKSLIELKKVIQY 93
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 98/176 (55%), Gaps = 17/176 (9%)
Query: 21 SVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLK--------EMGRELGLCPY 72
+ R+ + I +C +YE + + PGVY+I LK E + +CPY
Sbjct: 254 NTRNSMEEYSEIGLCGYYENYKKEFLFDFIEPGVYTIEDLKVICKGYKNEKNENIPMCPY 313
Query: 73 FLARQAIIHAKIVVYSYHYLLDPKIANVV--------SKELARSSVVVFDEAHNIDNVCV 124
F A++ I AK++V +Y Y++DPK++ + L + ++VFDEAHNID+VC+
Sbjct: 314 FCAKKIIEVAKVIVLNYQYIIDPKVSKSLFIGRDMNNRVNLYKKDIIVFDEAHNIDSVCL 373
Query: 125 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
++LSV I+R + KA GNI+ L ++ K + KLRE+ R+++ LR AQ +
Sbjct: 374 EALSVNIDRNILNKATGNIKKLLEKIETSKIMNEEKLREDCRRILQELR-AQGGEQ 428
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 98/176 (55%), Gaps = 17/176 (9%)
Query: 676 SVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLK--------EMGRELGLCPY 727
+ R+ + I +C +YE + + PGVY+I LK E + +CPY
Sbjct: 254 NTRNSMEEYSEIGLCGYYENYKKEFLFDFIEPGVYTIEDLKVICKGYKNEKNENIPMCPY 313
Query: 728 FLARQAIIHAKIVVYSYHYLLDPKIANVV--------SKELARSSVVVFDEAHNIDNVCV 779
F A++ I AK++V +Y Y++DPK++ + L + ++VFDEAHNID+VC+
Sbjct: 314 FCAKKIIEVAKVIVLNYQYIIDPKVSKSLFIGRDMNNRVNLYKKDIIVFDEAHNIDSVCL 373
Query: 780 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
++LSV I+R + KA GNI+ L ++ K + KLRE+ R+++ LR AQ +
Sbjct: 374 EALSVNIDRNILNKATGNIKKLLEKIETSKIMNEEKLREDCRRILQELR-AQGGEQ 428
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 561 DIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLY 620
D CV P +V + + L S F R DI+VI+NYG LLV++ +PDG+V +F SY+Y
Sbjct: 742 DRNCVCP-LIVTKSSDLVPLSSQFSLRSDITVIKNYGMLLVEMCKTIPDGIVAYFPSYIY 800
Query: 621 LESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
+E V++SWY+ GII ++ + KL+FIET+D + +
Sbjct: 801 MEEVISSWYELGIITSILEYKLIFIETKDIVST 833
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
I++ K DYGIMIFAD R+AR+DK+SKLP WI + + + NL+ AV +S+++L M+Q
Sbjct: 923 IIRNKKDYGIMIFADIRYARNDKKSKLPPWIIKCMDISNVNLTVSTAVNISRKFLLNMSQ 982
Query: 909 PF 910
+
Sbjct: 983 EY 984
>gi|167539830|ref|XP_001741373.1| DNA repair helicase rad3/xp-D [Entamoeba dispar SAW760]
gi|165894074|gb|EDR22158.1| DNA repair helicase rad3/xp-D, putative [Entamoeba dispar SAW760]
Length = 788
Score = 142 bits (358), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 104/374 (27%), Positives = 177/374 (47%), Gaps = 67/374 (17%)
Query: 52 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA--RSS 109
P + I +L + G++ CPYF +R+ + +V +Y+Y+LDPK NV ++ +
Sbjct: 154 PTIAGIDELVQFGKQHRQCPYFCSRKNFYKSPFIVCTYNYILDPKEENVTIGKMIDLDQT 213
Query: 110 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 169
++VFDEAHN+DN+ VD+ ++ ++ TIE A ++ L L EA L EY RLV
Sbjct: 214 LLVFDEAHNVDNIVVDAQTLTLSLETIELATISLARLTKLLS--IEASKKPLENEYKRLV 271
Query: 170 EGLRDAQSARETDVVLANPVLPDEILQ---------EVVPGNIRTAEHFVGFLKRFIEYL 220
EGLR +S ++ P +E + +V+PG R + FV +KR + +
Sbjct: 272 EGLR--RSELTNNIEEGEPYFYNEKKKTSEGDVDYDKVIPGTFRNSSQFVLLMKRIVNFF 329
Query: 221 KTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPAT 280
+ +L E+P + QQ ++E +
Sbjct: 330 REKL------HEAPT---------------------------------KKQQRIKEQHSI 350
Query: 281 FLKDISSKVC----IERKPLRFCAERLASLLRTL--EITNLTD-------FSSLVVITHL 327
+KDI + +C + + ++F RL L++TL E D + +L ++
Sbjct: 351 QVKDIVTGLCDSSVLTPEIIKFIPNRLHLLIQTLGDEYGGRQDVKGDSFYYDALYLVADF 410
Query: 328 ATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSP 387
A L+ S +GF+ + + + VL C+D++ AI+P+ +RF ++V TSGTLSP
Sbjct: 411 AALLCSSQEGFSYVPDVVKIDKDDYYHSVLNLVCVDAANAIQPILNRFHSIVFTSGTLSP 470
Query: 388 LDMYPKILNFQPVI 401
L Y IL + V+
Sbjct: 471 LKTYINILGLKNVV 484
Score = 85.9 bits (211), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 75/127 (59%), Gaps = 4/127 (3%)
Query: 707 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA--RSS 764
P + I +L + G++ CPYF +R+ + +V +Y+Y+LDPK NV ++ +
Sbjct: 154 PTIAGIDELVQFGKQHRQCPYFCSRKNFYKSPFIVCTYNYILDPKEENVTIGKMIDLDQT 213
Query: 765 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 824
++VFDEAHN+DN+ VD+ ++ ++ TIE A ++ L L EA L EY RLV
Sbjct: 214 LLVFDEAHNVDNIVVDAQTLTLSLETIELATISLARLTKLLS--IEASKKPLENEYKRLV 271
Query: 825 EGLRDAQ 831
EGLR ++
Sbjct: 272 EGLRRSE 278
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 70/122 (57%), Gaps = 16/122 (13%)
Query: 423 AMGLMIDDLPVFFPYEYIYPEQYAYMVELKKAL-DAKG----HCLLEMPSGTGKTTSLLS 477
A+ ++ + + FPY++IYPEQY ++ + + D K ++EM SGTGKT S+++
Sbjct: 10 ALDFSVNGIEIHFPYQFIYPEQYQFIKTVTSGVTDNKKPPHKQIIIEMGSGTGKTVSIIT 69
Query: 478 LIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNL 537
++ +++ +YC+RT+ EI++V EL +L ++ +VL+SR +L
Sbjct: 70 AAKGLLDNQGSNISHTIYCTRTIDEIKRVFNELTKL-----------SIPSIVLASRTHL 118
Query: 538 CI 539
C+
Sbjct: 119 CL 120
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 52/76 (68%)
Query: 578 LYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNL 637
L L S F R D ++ +YG+L+V+++ VPDGV+CFF SY Y+ ++ W + I +++
Sbjct: 531 LILSSQFFYRADRLILHSYGKLIVELSKTVPDGVLCFFPSYAYMNICISYWNEMKIFESI 590
Query: 638 QKRKLLFIETQDALDS 653
+ KL+FIE+++A ++
Sbjct: 591 AQNKLVFIESKNAYET 606
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 58/87 (66%), Gaps = 6/87 (6%)
Query: 850 LQGKTDYGIMIFADKRFARSDK--RSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMA 907
L+GKTDY ++I+ADKR+ +D+ ++ +P+WI + + T+LS ++++ L+K +L +M+
Sbjct: 697 LRGKTDYTVVIYADKRYKLNDRNVKASMPQWILDAIQKRYTDLSADQSIVLAKEFLMKMS 756
Query: 908 QPFTRE----DMLGVALLSLDQLLEKE 930
F + +M+G L +LD + +++
Sbjct: 757 YSFDTQFPIKEMIGKTLWTLDDIRKEQ 783
>gi|440295138|gb|ELP88051.1| DNA repair helicase rad3/xp-D, putative [Entamoeba invadens IP1]
Length = 778
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 107/400 (26%), Positives = 187/400 (46%), Gaps = 71/400 (17%)
Query: 23 RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHA 82
++R ++G C +Y+ + + P + + L E G++ CPY+ +R+ +
Sbjct: 128 KERRESG----FCQYYQDIEDIN-----IPPIAGVDDLVEFGKKNRRCPYYCSRRNFFKS 178
Query: 83 KIVVYSYHYLLDPKIANVVSKELA--RSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 140
+V +Y+YL+DPK+ NV +++ +++VFDEAHNIDN VD+ ++ ++ TIE A
Sbjct: 179 PFIVCTYNYLVDPKVENVTIGKMSDLHRTLLVFDEAHNIDNAFVDAQTMSLSLETIELAT 238
Query: 141 GNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARET------DVVLANPVLPDEI 194
++ L L K +S L EY RLVEGLR +Q+ E + N D
Sbjct: 239 VSLTRLSKLLTAEKSKES--LEMEYNRLVEGLRRSQAIYEDGEPYFYNETKKNEAGEDVP 296
Query: 195 LQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAY 254
+V+PG+ R + FV LKR + + + RL Q ++
Sbjct: 297 YDKVLPGSFRNSSQFVAILKRVVNFFRERLHEAQSKKDQ--------------------- 335
Query: 255 RYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVC----IERKPLRFCAERLASLLRTL 310
RL+ Q Q +KDI + +C I + ++ RL L++TL
Sbjct: 336 ------------RLKGQHTAQ------VKDIVTLLCDVLVIPPEIIKSLPTRLRVLIKTL 377
Query: 311 -----EITNLTD----FSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCC 361
E ++T + +L ++ A L+ +GF+ + + + +P+LY C
Sbjct: 378 GDEGGERKDVTGDHFYYDALYLVADFAALLCIGQEGFSYVPDVVKNDEDNEVHPILYLVC 437
Query: 362 LDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVI 401
+D++ A + V + T + TSGTL+PLD + K+L V+
Sbjct: 438 VDAANAAQNVLTKMHTTLFTSGTLAPLDTFIKLLGMNNVV 477
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 90/160 (56%), Gaps = 13/160 (8%)
Query: 678 RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHA 737
++R ++G C +Y+ + + P + + L E G++ CPY+ +R+ +
Sbjct: 128 KERRESG----FCQYYQDIEDIN-----IPPIAGVDDLVEFGKKNRRCPYYCSRRNFFKS 178
Query: 738 KIVVYSYHYLLDPKIANVVSKELA--RSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 795
+V +Y+YL+DPK+ NV +++ +++VFDEAHNIDN VD+ ++ ++ TIE A
Sbjct: 179 PFIVCTYNYLVDPKVENVTIGKMSDLHRTLLVFDEAHNIDNAFVDAQTMSLSLETIELAT 238
Query: 796 GNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
++ L L K +S L EY RLVEGLR +Q+ E
Sbjct: 239 VSLTRLSKLLTAEKSKES--LEMEYNRLVEGLRRSQAIYE 276
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 15/120 (12%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKG----HCLLEMPSGTGKTTSLLSLI 479
+ I +P+ FPY+YIYPEQY+++ + + +K ++EM +GTGKT S+++
Sbjct: 5 INFTITGVPIHFPYKYIYPEQYSFIKTVVSGVTSKTPPHKQIVIEMGTGTGKTVSIITAG 64
Query: 480 VAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCI 539
+ +V ++YC+RTV E+ ++ +EL L N+ + L+SRK++C+
Sbjct: 65 KGLLGTTGSNVDHVIYCTRTVDEMRQIFKELKVL-----------NIPAVALASRKHMCL 113
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 48/67 (71%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
F R D ++ +YG+L+V+++ +VPDG++CFF SY+Y+ ++ W + +I N+ KLL
Sbjct: 528 FPFRADRLILHSYGKLIVELSKIVPDGILCFFPSYVYMNLCISHWDEMDVIGNILLNKLL 587
Query: 644 FIETQDA 650
FIE+++A
Sbjct: 588 FIESKNA 594
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 850 LQGKTDYGIMIFADKRFARSDKR--SKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMA 907
L+GK DY ++I+ADKR+ +D + + +P+WI + L +LS +++V ++K +L +M+
Sbjct: 688 LRGKMDYAVVIYADKRYKFNDAKILNTMPQWIIDALMKQNADLSADQSVVIAKDFLMKMS 747
Query: 908 ----QPFTREDMLGVALLSLDQLLEKE 930
F EDM+G L + +L ++
Sbjct: 748 FSFDSDFPLEDMVGKTLWTEKDVLNEQ 774
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 38/55 (69%)
Query: 541 SEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRN 595
++F R D ++ +YG+L+V+++ +VPDG++CFF SY+Y+ D++ VI N
Sbjct: 526 TQFPFRADRLILHSYGKLIVELSKIVPDGILCFFPSYVYMNLCISHWDEMDVIGN 580
>gi|159467054|ref|XP_001691713.1| hypothetical protein CHLREDRAFT_100548 [Chlamydomonas reinhardtii]
gi|158279059|gb|EDP04821.1| predicted protein [Chlamydomonas reinhardtii]
Length = 341
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/96 (62%), Positives = 77/96 (80%)
Query: 323 VITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITS 382
++ ATLV +Y KGFAII+EP+ ++ P VP+PVL CLD+SLA++PVF +FQTVVITS
Sbjct: 1 LVADFATLVGTYAKGFAIIMEPYDERLPQVPDPVLQLSCLDASLAMRPVFSKFQTVVITS 60
Query: 383 GTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
GTLSP+D+YP+ILNF PV + SF MTL R CL P+V
Sbjct: 61 GTLSPIDLYPRILNFNPVAIQSFQMTLTRDCLCPVV 96
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 55/74 (74%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L + FE R D V+RNYG+LLV++A VPDG+V FF SY Y++ +++ W+D GI+ + +
Sbjct: 106 LSTKFEMRSDPGVMRNYGRLLVELAATVPDGIVAFFVSYRYMDQIISKWHDMGILQEIMQ 165
Query: 640 RKLLFIETQDALDS 653
KL+FIETQD +++
Sbjct: 166 HKLIFIETQDVVET 179
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 66/107 (61%), Gaps = 7/107 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+ +E D + + V +++ K DYG+MIFADKR+ R DKR KL
Sbjct: 237 ARL-EYLRETFQIKEADYLAFDAVRQAAQCVGRVIRSKADYGMMIFADKRYQRHDKRDKL 295
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLS 922
P+WI +L + NLST+ V +++ +LR MAQP+ R +G +LLS
Sbjct: 296 PQWITRHLREAHMNLSTDMMVHVAREFLRTMAQPYDR-GAVGKSLLS 341
>gi|198461164|ref|XP_002138964.1| GA25101 [Drosophila pseudoobscura pseudoobscura]
gi|198137257|gb|EDY69522.1| GA25101 [Drosophila pseudoobscura pseudoobscura]
Length = 418
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/116 (57%), Positives = 84/116 (72%), Gaps = 5/116 (4%)
Query: 827 LRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQE 881
LRD RE D + + + L+GKTDYGIMIFADKRF+R DKRS+LPKWIQE
Sbjct: 289 LRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRQDKRSRLPKWIQE 348
Query: 882 YLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARAEEE 937
+L D+ NLSTEEAVQL++RWLR+MAQPF+RED LG++LL+L QL E + E +
Sbjct: 349 HLVDSFCNLSTEEAVQLARRWLRRMAQPFSREDQLGISLLTLAQLENMEQEKLERQ 404
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/76 (77%), Positives = 68/76 (89%)
Query: 343 EPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIM 402
EPF DK PTV NP+L+F CLDSS+A+ PVF RFQTVVITSGTLSP+DMYPKIL+F PV+M
Sbjct: 68 EPFDDKTPTVSNPILHFSCLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVM 127
Query: 403 HSFSMTLARPCLLPMV 418
SF+MTLARPCLLPM+
Sbjct: 128 SSFTMTLARPCLLPMI 143
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C++P +V + + S FETR+D +VIRNYGQLLV++A VPDGVVCFFTSYLYLES
Sbjct: 138 CLLP-MIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGVVCFFTSYLYLES 196
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQD 649
VVASWYDQGI+D L + KLLFIETQD
Sbjct: 197 VVASWYDQGIVDTLLRYKLLFIETQD 222
>gi|269860969|ref|XP_002650201.1| DNA repair helicase [Enterocytozoon bieneusi H348]
gi|220066375|gb|EED43859.1| DNA repair helicase [Enterocytozoon bieneusi H348]
Length = 728
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 164/343 (47%), Gaps = 54/343 (15%)
Query: 53 GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVV 112
GVY+ ++ E ++ + + + + H VV++Y+YLLDP + ++V L ++ V+
Sbjct: 139 GVYTFNEMLEFSQKNNIHWLTMFQTTLHHCDFVVFAYNYLLDPGLYSIVYHSLQSTANVI 198
Query: 113 FDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL 172
F+ +ID+ C ++++I R +E A +++ LE TL + S L + ++ V G+
Sbjct: 199 FENGWDIDHQCTKIINLKITRPLLESAYQSLEWLEMTLDRNESMLSDILLK--SQKVNGI 256
Query: 173 RDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQE 232
+ AN L E +PGN+R++ H V KR IE+L
Sbjct: 257 -----GKNEIPYYANN-LNSPFYYEYIPGNMRSSIHTVKLFKRLIEFL------------ 298
Query: 233 SPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIE 292
K +L+VQQ S F+ +++ V I+
Sbjct: 299 --------------------------------KIKLKVQQPYTMSLKEFINEMADLVFID 326
Query: 293 RKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTV 352
L+FC++RL +LR L + TD +L +++ ATL++ Y+ GF + +++ T
Sbjct: 327 AHSLKFCSQRLGIVLRDLHVAQ-TDMCNLKIVSRFATLIAIYSDGFQMAFNHYTE-YDTQ 384
Query: 353 PNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKIL 395
P++ C+D S ++P+F +F TV+IT G L D+Y KIL
Sbjct: 385 YTPIIQLFCIDPSKVLQPIFSKFHTVMITVGALVFSDIYLKIL 427
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%)
Query: 589 DISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
D S+IRNYG L+++++ VVPD ++ F SY ++ ++ W + G I NL + KL+F+ET
Sbjct: 495 DSSIIRNYGNLILNLSKVVPDNIIVIFPSYFHINKIINEWDETGFIRNLLENKLIFVETT 554
Query: 649 DALDSRSVSKERDGKIVDGRCHSLTSS 675
+ + + + +GR L S+
Sbjct: 555 NYKEKTVIMQNFKIACDNGRGAILFST 581
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 83/163 (50%), Gaps = 14/163 (8%)
Query: 652 DSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDA-------VGREAP 704
DS + S + K++ +++TS+ G +P+ + ++ +D V +
Sbjct: 79 DSDTSSIISNLKVLIAYINNITSTKF-----IGIELPINNIFDMWDVYENINIDVSNKFI 133
Query: 705 LAP--GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELAR 762
L GVY+ ++ E ++ + + + + H VV++Y+YLLDP + ++V L
Sbjct: 134 LDNFVGVYTFNEMLEFSQKNNIHWLTMFQTTLHHCDFVVFAYNYLLDPGLYSIVYHSLQS 193
Query: 763 SSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 805
++ V+F+ +ID+ C ++++I R +E A +++ LE TL
Sbjct: 194 TANVIFENGWDIDHQCTKIINLKITRPLLESAYQSLEWLEMTL 236
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M I+ +P++FPY I+P + Y+ + K H ++E+PS +T +LLS V+Y
Sbjct: 1 MIFEINSIPIYFPYASIHPSEIEYITTMLMQFQKKDHFIIEIPSEIYRTLALLSSAVSYS 60
Query: 484 -----NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY 516
N P K++YC R + ++ L L Y
Sbjct: 61 IYCKNNGRPY---KIIYCVRDDSDTSSIISNLKVLIAY 95
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 548 DISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRN 595
D S+IRNYG L+++++ VVPD ++ F SY ++ + D+ IRN
Sbjct: 495 DSSIIRNYGNLILNLSKVVPDNIIVIFPSYFHINKIINEWDETGFIRN 542
>gi|78190825|gb|ABB29734.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH [Monosiga brevicollis]
Length = 207
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 69/77 (89%)
Query: 342 VEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVI 401
+EP+ D+AP+VP+PVL F C+D+SLA+KPVFDRFQ+V+ITSGTLSPLDMYPKILNF+PV
Sbjct: 1 IEPYDDRAPSVPDPVLRFTCMDASLAVKPVFDRFQSVIITSGTLSPLDMYPKILNFRPVT 60
Query: 402 MHSFSMTLARPCLLPMV 418
M SF MTL+R LLP+V
Sbjct: 61 MCSFDMTLSRTSLLPIV 77
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L + +E R+ +V R YG LL+DI VPDGVVCFF SY YLES V++W DQGI+ +Q
Sbjct: 87 LSTRYEDREQSAVKRGYGHLLLDICSAVPDGVVCFFVSYEYLESAVSTWIDQGIMTQIQA 146
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
+KL+F+ETQD ++ +GR L S + R K E +
Sbjct: 147 KKLVFVETQDGAETSQALDSFQKACANGRGAVLLSVA---RGKVSEGL 191
>gi|167377495|ref|XP_001734418.1| DNA repair helicase rad3/xp-D [Entamoeba dispar SAW760]
gi|165904069|gb|EDR29430.1| DNA repair helicase rad3/xp-D, putative [Entamoeba dispar SAW760]
Length = 680
Score = 125 bits (315), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 106/400 (26%), Positives = 181/400 (45%), Gaps = 72/400 (18%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
+C +Y + E P+ G I +L + G++ CPYF +R + +V +Y+Y+L
Sbjct: 36 LCPYYHDIED---EIPIIAG---IDELVQFGKQYQRCPYFCSRNNFYKSPFIVCTYNYIL 89
Query: 94 DPKIANVVSKELA--RSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLK 151
DPK+ NV +++ +++VFDEAHN+DNV VD+ ++ ++ T+E A ++ L L
Sbjct: 90 DPKVENVTVGKMSDLHQTLLVFDEAHNVDNVVVDAQTLTLSLDTLELATISLNRLSKLLS 149
Query: 152 EMKEADSAKLREEYARLVEGLRDAQSARETD----VVLANPVLPDEILQEV-VPGNIRTA 206
EA L EY RLVEGL+ ++ +ET+ + +N I +E +P + T+
Sbjct: 150 --IEASKRPLENEYKRLVEGLKHSELTKETEEERQKLFSNKKTTKRIEEENDIPIDTITS 207
Query: 207 EHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKT 266
FV +K + + + +LR E+P
Sbjct: 208 IQFVILMKGIVNFFREKLR------EAP-------------------------------- 229
Query: 267 RLRVQQVVQESPATFLKDISSKVC----IERKPLRFCAERLASLLRTL--EITNLTD--- 317
+ +Q + E + +K + C + + + RL L++ L E D
Sbjct: 230 -IHKKQHINEHHSIPIKSVVDSFCDSLALTPEIVSLIPLRLHLLIKALGDEYGGRQDVKG 288
Query: 318 ----FSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFD 373
+ L ++ A L+ S +GF+ + + + VL C+D++ AI+P +
Sbjct: 289 DSFYYDDLYLVADFAALLCSCQEGFSYVPDVVKMDKDNCFHCVLNLICVDAANAIQPTLN 348
Query: 374 RFQTVVITSGTLSPLDMYPKILNFQPV-----IMHSFSMT 408
+F ++V TSGTLSPL Y IL V I SFS T
Sbjct: 349 KFHSIVFTSGTLSPLKTYINILGLNNVVEEKQITSSFSNT 388
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 87/151 (57%), Gaps = 10/151 (6%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
+C +Y + E P+ G I +L + G++ CPYF +R + +V +Y+Y+L
Sbjct: 36 LCPYYHDIED---EIPIIAG---IDELVQFGKQYQRCPYFCSRNNFYKSPFIVCTYNYIL 89
Query: 749 DPKIANVVSKELA--RSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLK 806
DPK+ NV +++ +++VFDEAHN+DNV VD+ ++ ++ T+E A ++ L L
Sbjct: 90 DPKVENVTVGKMSDLHQTLLVFDEAHNVDNVVVDAQTLTLSLDTLELATISLNRLSKLLS 149
Query: 807 EMKEADSAKLREEYARLVEGLRDAQSARETD 837
EA L EY RLVEGL+ ++ +ET+
Sbjct: 150 --IEASKRPLENEYKRLVEGLKHSELTKETE 178
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 47/73 (64%)
Query: 578 LYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNL 637
+ S + R + +I +YG+L+V+++ VPDG++CFF SY Y+ ++ W + II+++
Sbjct: 422 ILFSSQYTYRSNRLIIHSYGRLIVELSKTVPDGILCFFPSYSYMNICISYWDEMKIIESI 481
Query: 638 QKRKLLFIETQDA 650
KL+F+E+ D
Sbjct: 482 YLNKLIFVESNDG 494
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 850 LQGKTDYGIMIFADKRFARSDKR--SKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMA 907
++GK DY + I+ADKR+ +D + S +P+WI + L T++S +++++L+K +L M+
Sbjct: 588 IRGKNDYAVAIYADKRYRFNDSKIISSMPQWIVDALEKRFTDISADQSIKLTKEFLMNMS 647
Query: 908 QPFTRE 913
F +
Sbjct: 648 YLFNNQ 653
Score = 48.1 bits (113), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 541 SEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVI 593
S++ R + +I +YG+L+V+++ VPDG++CFF SY Y+ D++ +I
Sbjct: 426 SQYTYRSNRLIIHSYGRLIVELSKTVPDGILCFFPSYSYMNICISYWDEMKII 478
>gi|353442067|gb|AER00319.1| xeroderma pigmentosum group D, partial [Hydra vulgaris]
Length = 173
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 68/72 (94%)
Query: 347 DKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFS 406
D+ PT+PNP+++FCCLD+S+AIKPVF+RFQ+VVITSGTLSP+DMYPK+L+FQPV M +F+
Sbjct: 2 DQTPTIPNPIIHFCCLDASVAIKPVFERFQSVVITSGTLSPVDMYPKLLDFQPVNMSTFT 61
Query: 407 MTLARPCLLPMV 418
MTLAR C+LP++
Sbjct: 62 MTLARQCVLPII 73
Score = 111 bits (278), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 68/88 (77%), Gaps = 3/88 (3%)
Query: 564 CVVPDGVVCF-FTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLE 622
CV+P ++C + + S F+TRDD++VIRNYG LLV+++ VPDG+ CFF SYLY+E
Sbjct: 68 CVLP--IICSKGNDQVAISSSFQTRDDMAVIRNYGNLLVEMSASVPDGIACFFVSYLYME 125
Query: 623 SVVASWYDQGIIDNLQKRKLLFIETQDA 650
+VV+ W+DQGII N+QK KLLFIETQD
Sbjct: 126 TVVSIWHDQGIISNIQKNKLLFIETQDG 153
>gi|401412199|ref|XP_003885547.1| hypothetical protein NCLIV_059440 [Neospora caninum Liverpool]
gi|325119966|emb|CBZ55519.1| hypothetical protein NCLIV_059440 [Neospora caninum Liverpool]
Length = 1080
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 123/242 (50%), Gaps = 67/242 (27%)
Query: 178 ARETDVVLANPVLP-DEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPAT 236
A ET +LA+P+LP D +L++ VPG+IR AEHF+ ++R + YL
Sbjct: 611 ANETLDLLASPLLPEDALLEQAVPGSIRKAEHFIALMRRIVSYL---------------- 654
Query: 237 FLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPL 296
K+ +++ ++ E P +FL + I+ L
Sbjct: 655 ----------------------------KSYIKIYELKSEGPLSFLHMFEKETHIDASLL 686
Query: 297 RFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPV 356
+F +RL SL TL+IT + ++ L ++ TLV++Y +GF +I +P+ + A + +P+
Sbjct: 687 KFFYDRLKSLFNTLQITEVESYAPLTLVADFCTLVATYCEGFILICDPYPE-AVGLYDPL 745
Query: 357 LYFCCLDSSLAIKPVFDRF---------------------QTVVITSGTLSPLDMYPKIL 395
L CLD+SLA++PV RF Q++++TSGT+SPL++YPK+L
Sbjct: 746 LQLSCLDASLAMQPVLKRFQLLSASFVFAWRPRPLTPQLPQSLILTSGTISPLELYPKLL 805
Query: 396 NF 397
NF
Sbjct: 806 NF 807
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 73/94 (77%), Gaps = 1/94 (1%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
ID++ V+FPY++IYPEQYAY+ LK+ LDAKGH +LEMP+GTGKT +LLSL+ +Y
Sbjct: 4 FQIDEVTVYFPYDFIYPEQYAYIRALKQTLDAKGHAVLEMPTGTGKTVALLSLLTSYQLT 63
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIK 519
HP + K+LYC+RTVPE+EK + EL + DY I+
Sbjct: 64 HP-RLGKILYCTRTVPEMEKALLELKGVIDYRIE 96
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 97/192 (50%), Gaps = 47/192 (24%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLKE---------MGRELGLCPYFLARQAIIHAKI 84
+C +YE D GVY+I +LK + R+L CPYFLAR+ + A +
Sbjct: 302 LCAWYENLDRYFAPQFFPAGVYTIEELKVASANWRHPLLDRKLPFCPYFLARRLLHIANV 361
Query: 85 VVYSYHYLLDPKIANVV----------------------------SKELARS-------- 108
VV +Y Y+LDPK++ ++ L R
Sbjct: 362 VVLNYQYILDPKVSQAALLTPLPDGISSSHTAGAQSRSTYTNPYQNRGLGRGPGTEEVQY 421
Query: 109 --SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYA 166
SVVVFDEAHNIDNVC+++LSV INR +E A+ N+ L ++E+K+ D+ +LREEY
Sbjct: 422 EGSVVVFDEAHNIDNVCIEALSVNINRSVMEAALRNLSQLAEKIEEVKKEDAERLREEYE 481
Query: 167 RLVEGLRDAQSA 178
LV GL+ + A
Sbjct: 482 NLVRGLKRRREA 493
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 97/192 (50%), Gaps = 47/192 (24%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLKE---------MGRELGLCPYFLARQAIIHAKI 739
+C +YE D GVY+I +LK + R+L CPYFLAR+ + A +
Sbjct: 302 LCAWYENLDRYFAPQFFPAGVYTIEELKVASANWRHPLLDRKLPFCPYFLARRLLHIANV 361
Query: 740 VVYSYHYLLDPKIANVV----------------------------SKELARS-------- 763
VV +Y Y+LDPK++ ++ L R
Sbjct: 362 VVLNYQYILDPKVSQAALLTPLPDGISSSHTAGAQSRSTYTNPYQNRGLGRGPGTEEVQY 421
Query: 764 --SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYA 821
SVVVFDEAHNIDNVC+++LSV INR +E A+ N+ L ++E+K+ D+ +LREEY
Sbjct: 422 EGSVVVFDEAHNIDNVCIEALSVNINRSVMEAALRNLSQLAEKIEEVKKEDAERLREEYE 481
Query: 822 RLVEGLRDAQSA 833
LV GL+ + A
Sbjct: 482 NLVRGLKRRREA 493
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 45/60 (75%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+MIFAD R++R DKRSKLP WI ++L + L+TE A+ +++ +LR M+Q
Sbjct: 952 VIRSKNDYGLMIFADARYSRIDKRSKLPPWILKHLDNAHLALNTETAISVARTFLRHMSQ 1011
>gi|297705156|ref|XP_002829449.1| PREDICTED: TFIIH basal transcription factor complex helicase XPD
subunit-like, partial [Pongo abelii]
Length = 87
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 71/86 (82%), Gaps = 1/86 (1%)
Query: 458 KGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYY 517
+GH +LEMPSGTGKT SLL+LI+AY A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y
Sbjct: 2 QGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFY 61
Query: 518 IKH-NEEINMTGLVLSSRKNLCIHSE 542
K E++ GL LSSRKNLCIH E
Sbjct: 62 EKQEGEKLQFLGLALSSRKNLCIHPE 87
>gi|449701609|gb|EMD42397.1| DNA repair helicase rad3/xpD, putative [Entamoeba histolytica KU27]
Length = 770
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/402 (25%), Positives = 178/402 (44%), Gaps = 80/402 (19%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
+C +Y + E P+ G I +L + G++ CPYF +R + +V +Y+Y+L
Sbjct: 143 LCPYYHDIE---DEIPIVAG---IDELVQFGKQHQRCPYFCSRNNFYKSPFIVCTYNYIL 196
Query: 94 DPKIANVVSKELA--RSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLK 151
DPK+ NV +++ +++VFDEAHN+DNV VD+ ++ ++ T+E A ++ L L
Sbjct: 197 DPKVENVTVGKMSDLHQTLLVFDEAHNVDNVVVDAQTLTLSLDTLELATISLVRLTKLLS 256
Query: 152 EMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVG 211
E L+ EY RLVEGLR ++ + + + +P + T+ FV
Sbjct: 257 --IEESKKPLKNEYKRLVEGLRHSEPTKRIEE------------ENNIPIDTTTSIQFVV 302
Query: 212 FLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQ 271
+ + + + +LR E H+ +
Sbjct: 303 LMNDIVNFFREKLR-----------------------------------EAHIHKK---- 323
Query: 272 QVVQESPATFLKDISSKVC----IERKPLRFCAERLASLLRTL--EITNLTD-------F 318
Q + E + +K+I C + + + RL L++ L E D +
Sbjct: 324 QHINEHCSIPIKNIVDSFCNSLALTPEIVSLIPLRLHLLIKALGDEYGGRQDVKGDSFYY 383
Query: 319 SSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTV 378
L ++ A L+ S +GF+ + + + VL C+D++ AI+P+ ++F ++
Sbjct: 384 DDLYLVADFAALLCSCQEGFSYVPDVVKMDKDNCFHSVLNLICVDAAHAIQPILNKFHSI 443
Query: 379 VITSGTLSPLDMYPKILNFQPV-----IMHSFSMTLARPCLL 415
+ TSGTLSPL Y IL V I SFS ++ R C L
Sbjct: 444 IFTSGTLSPLKTYINILGLNNVVEEKQITSSFS-SMRRICPL 484
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 84/148 (56%), Gaps = 10/148 (6%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
+C +Y + E P+ G I +L + G++ CPYF +R + +V +Y+Y+L
Sbjct: 143 LCPYYHDIE---DEIPIVAG---IDELVQFGKQHQRCPYFCSRNNFYKSPFIVCTYNYIL 196
Query: 749 DPKIANVVSKELA--RSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLK 806
DPK+ NV +++ +++VFDEAHN+DNV VD+ ++ ++ T+E A ++ L L
Sbjct: 197 DPKVENVTVGKMSDLHQTLLVFDEAHNVDNVVVDAQTLTLSLDTLELATISLVRLTKLLS 256
Query: 807 EMKEADSAKLREEYARLVEGLRDAQSAR 834
E L+ EY RLVEGLR ++ +
Sbjct: 257 --IEESKKPLKNEYKRLVEGLRHSEPTK 282
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 70/126 (55%), Gaps = 16/126 (12%)
Query: 419 RENYAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKG-----HCLLEMPSGTGKTT 473
+E ++ ++ + + FPY++IYPEQY ++ + + ++EM +GTGKT
Sbjct: 7 KEQQSIIFTVNGIEIHFPYQFIYPEQYQFIKTVTSGVTNNKKPPHKQIIIEMGTGTGKTV 66
Query: 474 SLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSS 533
S+++ ++ +++ +YC+RT+ EI+++ EL +L ++ +VL+S
Sbjct: 67 SIITAAKGLLDNQGSNISHTIYCTRTIDEIKQIFNELTKL-----------SIPSVVLAS 115
Query: 534 RKNLCI 539
R +LC+
Sbjct: 116 RAHLCL 121
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 48/73 (65%)
Query: 578 LYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNL 637
+ S + R + +I +YG+L+++++ VPDG++CFF SY Y+ ++ W + II+++
Sbjct: 512 ILFSSQYAYRTNRLIIHSYGRLILELSKTVPDGILCFFPSYSYMNICISYWDEMKIIESI 571
Query: 638 QKRKLLFIETQDA 650
KL+F+E+ D+
Sbjct: 572 YFNKLIFVESNDS 584
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 850 LQGKTDYGIMIFADKRFARSDKR--SKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMA 907
++GK DY + I+ADKR+ +D + S +P+WI + L T++S ++++ L+K +L +M+
Sbjct: 678 IRGKNDYAVAIYADKRYKFNDNKIISSMPQWIVDALEKRFTDISADQSITLAKEFLMKMS 737
Query: 908 QPFTREDML 916
F + L
Sbjct: 738 YLFNNQTNL 746
Score = 46.6 bits (109), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 35/53 (66%)
Query: 541 SEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVI 593
S++ R + +I +YG+L+++++ VPDG++CFF SY Y+ D++ +I
Sbjct: 516 SQYAYRTNRLIIHSYGRLILELSKTVPDGILCFFPSYSYMNICISYWDEMKII 568
>gi|67469709|ref|XP_650832.1| DNA repair helicase [Entamoeba histolytica HM-1:IMSS]
gi|56467489|gb|EAL45446.1| DNA repair helicase, putative [Entamoeba histolytica HM-1:IMSS]
Length = 770
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/402 (25%), Positives = 178/402 (44%), Gaps = 80/402 (19%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
+C +Y + E P+ G I +L + G++ CPYF +R + +V +Y+Y+L
Sbjct: 143 LCPYYHDIE---DEIPIVAG---IDELVQFGKQHQRCPYFCSRNNFYKSPFIVCTYNYIL 196
Query: 94 DPKIANVVSKELA--RSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLK 151
DPK+ NV +++ +++VFDEAHN+DNV VD+ ++ ++ T+E A ++ L L
Sbjct: 197 DPKVENVTVGKMSDLHQTLLVFDEAHNVDNVVVDAQTLTLSLDTLELATISLVRLTKLLS 256
Query: 152 EMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVG 211
E L+ EY RLVEGLR ++ + + + +P + T+ FV
Sbjct: 257 --IEESKKPLKNEYKRLVEGLRHSEPTKRIEE------------ENNIPIDTTTSIQFVV 302
Query: 212 FLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQ 271
+ + + + +LR E H+ +
Sbjct: 303 LMNDIVNFFREKLR-----------------------------------EAHIHKK---- 323
Query: 272 QVVQESPATFLKDISSKVC----IERKPLRFCAERLASLLRTL--EITNLTD-------F 318
Q + E + +K+I C + + + RL L++ L E D +
Sbjct: 324 QHINEHCSIPIKNIVDSFCNSLALTPEIVSLIPLRLHLLIKALGDEYGGRQDVKGDSFYY 383
Query: 319 SSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTV 378
L ++ A L+ S +GF+ + + + VL C+D++ AI+P+ ++F ++
Sbjct: 384 DDLYLVADFAALLCSCQEGFSYVPDVVKMDKDNCFHSVLNLICVDAAHAIQPILNKFHSI 443
Query: 379 VITSGTLSPLDMYPKILNFQPV-----IMHSFSMTLARPCLL 415
+ TSGTLSPL Y IL V I SFS ++ R C L
Sbjct: 444 IFTSGTLSPLKTYINILGLNNVVEEKQITSSFS-SMRRICPL 484
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 84/148 (56%), Gaps = 10/148 (6%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
+C +Y + E P+ G I +L + G++ CPYF +R + +V +Y+Y+L
Sbjct: 143 LCPYYHDIE---DEIPIVAG---IDELVQFGKQHQRCPYFCSRNNFYKSPFIVCTYNYIL 196
Query: 749 DPKIANVVSKELA--RSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLK 806
DPK+ NV +++ +++VFDEAHN+DNV VD+ ++ ++ T+E A ++ L L
Sbjct: 197 DPKVENVTVGKMSDLHQTLLVFDEAHNVDNVVVDAQTLTLSLDTLELATISLVRLTKLLS 256
Query: 807 EMKEADSAKLREEYARLVEGLRDAQSAR 834
E L+ EY RLVEGLR ++ +
Sbjct: 257 --IEESKKPLKNEYKRLVEGLRHSEPTK 282
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 70/126 (55%), Gaps = 16/126 (12%)
Query: 419 RENYAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKG-----HCLLEMPSGTGKTT 473
+E ++ ++ + + FPY++IYPEQY ++ + + ++EM +GTGKT
Sbjct: 7 KEQQSIIFTVNGIEIHFPYQFIYPEQYQFIKTVTSGVTNNKKPPHKQIIIEMGTGTGKTV 66
Query: 474 SLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSS 533
S+++ ++ +++ +YC+RT+ EI+++ EL +L ++ +VL+S
Sbjct: 67 SIITAAKGLLDNQGSNISHTIYCTRTIDEIKQIFNELTKL-----------SIPSVVLAS 115
Query: 534 RKNLCI 539
R +LC+
Sbjct: 116 RAHLCL 121
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 48/73 (65%)
Query: 578 LYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNL 637
+ S + R + +I +YG+L+++++ VPDG++CFF SY Y+ ++ W + II+++
Sbjct: 512 ILFSSQYAYRTNRLIIHSYGRLILELSKTVPDGILCFFPSYSYMNICISYWDEMKIIESI 571
Query: 638 QKRKLLFIETQDA 650
KL+F+E+ D+
Sbjct: 572 YSNKLIFVESNDS 584
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 850 LQGKTDYGIMIFADKRFARSDKR--SKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMA 907
++GK DY + I+ADKR+ +D + S +P+WI + L T++S ++++ L+K +L +M+
Sbjct: 678 IRGKNDYAVAIYADKRYKFNDNKIISSMPQWIVDALEKRFTDISADQSITLAKEFLMKMS 737
Query: 908 QPFTREDML 916
F + L
Sbjct: 738 YLFNNQTNL 746
Score = 46.6 bits (109), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 35/53 (66%)
Query: 541 SEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVI 593
S++ R + +I +YG+L+++++ VPDG++CFF SY Y+ D++ +I
Sbjct: 516 SQYAYRTNRLIIHSYGRLILELSKTVPDGILCFFPSYSYMNICISYWDEMKII 568
>gi|71400429|ref|XP_803049.1| TFIIH basal transcription factor complex helicase subunit
[Trypanosoma cruzi strain CL Brener]
gi|70865619|gb|EAN81603.1| TFIIH basal transcription factor complex helicase subunit, putative
[Trypanosoma cruzi]
Length = 452
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 90/144 (62%), Gaps = 7/144 (4%)
Query: 282 LKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHL-ATLVSSYTK---- 336
L + + ++ + R+ ERL L+ TL+ITN F ++ +I + TL + YT
Sbjct: 1 LSKVRDECAVDIRHFRYLTERLKVLMNTLQITNSHKFRNVSLIAQMYMTLSTHYTDDRYE 60
Query: 337 --GFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKI 394
GF ++ E P VP+PV+ C+D+SLA++ F ++++VV+TSGTLSPLD+YPKI
Sbjct: 61 KPGFVVVCEAHDPTRPAVPDPVIRLVCVDASLALREAFSKYRSVVLTSGTLSPLDIYPKI 120
Query: 395 LNFQPVIMHSFSMTLARPCLLPMV 418
L F PVI SF MTL+R C+ P+V
Sbjct: 121 LGFTPVIAKSFQMTLSRKCIAPVV 144
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+ KTDYG+M+ D+RFA +DKR KLP WIQ+ L +N TNLS + A+ +++ + ++MAQ
Sbjct: 326 VLRNKTDYGMMLLVDRRFALNDKRKKLPIWIQQCLKEN-TNLSVDAAIAVARGFFKEMAQ 384
Query: 909 PFTREDMLGVALLSLDQLLEKEHARAEEEEVP 940
P+ + LG L S + L K + + P
Sbjct: 385 PWEHKKDLGTTLFSKETLALKGFLKPSKRSFP 416
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 596 YGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
Y LL + VPDG+VCFFT Y Y+ V+ W+ G + L + KL+FIETQ
Sbjct: 179 YEDLLRGLGKTVPDGIVCFFTGYQYMGEVLLGWHRSGFLKELAQYKLIFIETQ 231
>gi|429965815|gb|ELA47812.1| DNA repair helicase (rad3) [Vavraia culicis 'floridensis']
Length = 799
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 158/345 (45%), Gaps = 70/345 (20%)
Query: 53 GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVV 112
G+Y+ ++K+ G+ CPYFL R+A+ + ++ +Y+Y+LDPKI ++ L +++++
Sbjct: 222 GIYTFEQIKQKGQHFKFCPYFLTRKALSSSNFLILTYNYVLDPKIKEKIN--LPMNAILI 279
Query: 113 FDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL 172
FDEAHNIDN C+++ S I+R + ++ +E +K ++ + +
Sbjct: 280 FDEAHNIDNACLEAFSYEISRSVVNGCSKGLEVMEDMIK-TGSGNTVNACASHKEHADRT 338
Query: 173 RDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQE 232
D +S Q+ PGN+R H + LKR +E+L+ +L+ +
Sbjct: 339 HDIESL-------------STFSQKKWPGNLRKDVHVLSILKRILEFLRIKLKSTHLTIN 385
Query: 233 SPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIE 292
+P FL + E+L TF I
Sbjct: 386 TPQNFLCSL--------------------ENL---------------TF---------IS 401
Query: 293 RKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSY--TKGFAIIVEPFSDKAP 350
R+ L +R + +++ + L V+ + +S Y + F+++ EPF
Sbjct: 402 RRTLSCLKKR----FQMIKLPFDENVDKLNVLVDMMDTLSRYAGSNAFSVVFEPFLSNNS 457
Query: 351 TVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKIL 395
+P L C DS +A+ + +F++++ITSGTL+P D+Y ++L
Sbjct: 458 L--SPKLTLSCNDSRIAMSAL--KFKSIMITSGTLTPFDVYMRLL 498
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ID +P++FPY I PEQ +Y+ E + + +EMP+G+GKT +LS V+Y
Sbjct: 1 MMFKIDSIPIYFPYPTISPEQLSYIKETIASFTTTSNLFIEMPAGSGKTICILSAAVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
H D + +YC+RTV E EK + EL L Y+K + ++ GL L+SRK+LC++ E
Sbjct: 61 LYHMQDDIRFVYCTRTVQESEKTLFELQMLIS-YVKQHVKVRYLGLGLTSRKHLCVNEE 118
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 64/99 (64%), Gaps = 2/99 (2%)
Query: 708 GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVV 767
G+Y+ ++K+ G+ CPYFL R+A+ + ++ +Y+Y+LDPKI ++ L +++++
Sbjct: 222 GIYTFEQIKQKGQHFKFCPYFLTRKALSSSNFLILTYNYVLDPKIKEKIN--LPMNAILI 279
Query: 768 FDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLK 806
FDEAHNIDN C+++ S I+R + ++ +E +K
Sbjct: 280 FDEAHNIDNACLEAFSYEISRSVVNGCSKGLEVMEDMIK 318
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S ++ R S IRNY L+ D+ VVPDG++ FF SY+++ +++ + +I L
Sbjct: 570 LSSSYKLRASSSTIRNYATLIKDLCDVVPDGMIIFFPSYVFMHEIISKC--EFMIKKLH- 626
Query: 640 RKLLFIET 647
KL+FIET
Sbjct: 627 -KLIFIET 633
Score = 44.3 bits (103), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
+ S ++ R S IRNY L+ D+ VVPDG++ FF SY+++ +
Sbjct: 570 LSSSYKLRASSSTIRNYATLIKDLCDVVPDGMIIFFPSYVFMHEI 614
>gi|394994903|gb|AFN42926.1| XPD2 protein, partial [Plasmodium falciparum]
Length = 526
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
+DD+ +FFPY+YIYPEQYAYM LKK LD++GHC+LEMP+GTGKT ++ SLI +Y H
Sbjct: 6 LDDVEIFFPYDYIYPEQYAYMKYLKKTLDSEGHCVLEMPTGTGKTVAIFSLITSYQ-YHK 64
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYI 518
D K ++C+RTV E+EK + EL ++ Y I
Sbjct: 65 KDEGKFIFCTRTVAEMEKSLLELKKVIQYRI 95
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 96/161 (59%), Gaps = 17/161 (10%)
Query: 30 ENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRE--------LGLCPYFLARQAIIH 81
+NI +C +YE + + PGVY+I LK + + + +CPYF A++ I
Sbjct: 266 DNIGLCGYYENYKKEFLYDLIKPGVYTIEDLKVLCKNYKNKENVNVPICPYFCAKKIIEI 325
Query: 82 AKIVVYSYHYLLDPKIANV------VSKEL---ARSSVVVFDEAHNIDNVCVDSLSVRIN 132
+K+++ +Y Y++DPK++ ++K + ++ ++VFDEAHNID+VC+++LSV I+
Sbjct: 326 SKVIILNYQYVIDPKVSKALFSWKDMNKNVHLKNKNDIIVFDEAHNIDSVCLEALSVNID 385
Query: 133 RRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 173
R + KA NI L +++ K + KL+EE +++E ++
Sbjct: 386 RNILNKASMNITKLMKKIEQSKMLNEQKLKEECNKILEKIK 426
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 96/161 (59%), Gaps = 17/161 (10%)
Query: 685 ENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRE--------LGLCPYFLARQAIIH 736
+NI +C +YE + + PGVY+I LK + + + +CPYF A++ I
Sbjct: 266 DNIGLCGYYENYKKEFLYDLIKPGVYTIEDLKVLCKNYKNKENVNVPICPYFCAKKIIEI 325
Query: 737 AKIVVYSYHYLLDPKIANV------VSKEL---ARSSVVVFDEAHNIDNVCVDSLSVRIN 787
+K+++ +Y Y++DPK++ ++K + ++ ++VFDEAHNID+VC+++LSV I+
Sbjct: 326 SKVIILNYQYVIDPKVSKALFSWKDMNKNVHLKNKNDIIVFDEAHNIDSVCLEALSVNID 385
Query: 788 RRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 828
R + KA NI L +++ K + KL+EE +++E ++
Sbjct: 386 RNILNKASMNITKLMKKIEQSKMLNEQKLKEECNKILEKIK 426
>gi|394994901|gb|AFN42925.1| XPD1 protein, partial [Plasmodium falciparum]
Length = 437
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
+DD+ +FFPY+YIYPEQYAYM LKK LD++GHC+LEMP+GTGKT ++ SLI +Y H
Sbjct: 6 LDDVEIFFPYDYIYPEQYAYMKYLKKTLDSEGHCVLEMPTGTGKTVAIFSLITSYQ-YHK 64
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYI 518
D K ++C+RTV E+EK + EL ++ Y I
Sbjct: 65 KDEGKFIFCTRTVAEMEKSLIELKKVIQYRI 95
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 95/161 (59%), Gaps = 17/161 (10%)
Query: 30 ENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRE--------LGLCPYFLARQAIIH 81
+NI +C +YE + + PGVY+I LK + + + +CPYF A++ I
Sbjct: 266 DNIGLCGYYENYKKEFLYDLIKPGVYTIEDLKVLCKNYKNKENVNVPICPYFCAKKIIEI 325
Query: 82 AKIVVYSYHYLLDPKIANV------VSKEL---ARSSVVVFDEAHNIDNVCVDSLSVRIN 132
+K+++ +Y Y++ PK++ ++K + ++ ++VFDEAHNID+VC+++LSV I+
Sbjct: 326 SKVIILNYQYVIVPKVSKALFSWKDMNKNVHLKNKNDIIVFDEAHNIDSVCLEALSVNID 385
Query: 133 RRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 173
R + KA NI L +++ K + KL+EE +++E ++
Sbjct: 386 RNILNKASMNITKLMKKIEQSKMLNEQKLKEECNKILEKIK 426
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 95/161 (59%), Gaps = 17/161 (10%)
Query: 685 ENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRE--------LGLCPYFLARQAIIH 736
+NI +C +YE + + PGVY+I LK + + + +CPYF A++ I
Sbjct: 266 DNIGLCGYYENYKKEFLYDLIKPGVYTIEDLKVLCKNYKNKENVNVPICPYFCAKKIIEI 325
Query: 737 AKIVVYSYHYLLDPKIANV------VSKEL---ARSSVVVFDEAHNIDNVCVDSLSVRIN 787
+K+++ +Y Y++ PK++ ++K + ++ ++VFDEAHNID+VC+++LSV I+
Sbjct: 326 SKVIILNYQYVIVPKVSKALFSWKDMNKNVHLKNKNDIIVFDEAHNIDSVCLEALSVNID 385
Query: 788 RRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 828
R + KA NI L +++ K + KL+EE +++E ++
Sbjct: 386 RNILNKASMNITKLMKKIEQSKMLNEQKLKEECNKILEKIK 426
>gi|90075836|dbj|BAE87598.1| unnamed protein product [Macaca fascicularis]
Length = 323
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct: 67 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 126
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KLLFIETQD ++ ++ +GR L S + R K E I Y +
Sbjct: 127 NKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA---RGKVSEGIDFVHHYGR 179
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 69/99 (69%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR DKR KL
Sbjct: 198 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKL 256
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 257 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHRED 295
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 52/57 (91%)
Query: 362 LDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL PM+
Sbjct: 1 MDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMI 57
>gi|68069513|ref|XP_676668.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56496467|emb|CAH97769.1| hypothetical protein PB000523.02.0 [Plasmodium berghei]
Length = 363
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 71/93 (76%), Gaps = 1/93 (1%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
+D+L +FFPY+YIYPEQYAYM LKK LD++GHC+LEMP+GTGKT ++ SLI +Y
Sbjct: 4 FYLDNLEIFFPYDYIYPEQYAYMKYLKKTLDSEGHCVLEMPTGTGKTVAIFSLITSYQ-Y 62
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDYYI 518
+ D +K ++C+RTV E+EK + EL ++ +Y I
Sbjct: 63 YKNDNSKFIFCTRTVAEMEKSLIELKKVINYRI 95
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 77/125 (61%), Gaps = 16/125 (12%)
Query: 31 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELG--------LCPYFLARQAIIHA 82
++ +C ++E + + PGVY+I +LKE+ + +CPYF A++ I A
Sbjct: 239 DLGLCGYFENYKKDFVYELIEPGVYTIEELKELCKNYKNRENINTPICPYFCAKKIIEIA 298
Query: 83 KIVVYSYHYLLDPKIANVV--SKEL------ARSSVVVFDEAHNIDNVCVDSLSVRINRR 134
K++V +Y Y++DPK++ + K++ ++ ++VFDEAHNID+VC+++LSV I+R
Sbjct: 299 KVIVLNYQYIIDPKVSKSIFLGKDINNRVNYKKNDIIVFDEAHNIDSVCLEALSVNIDRS 358
Query: 135 TIEKA 139
+ KA
Sbjct: 359 ILNKA 363
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 77/125 (61%), Gaps = 16/125 (12%)
Query: 686 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELG--------LCPYFLARQAIIHA 737
++ +C ++E + + PGVY+I +LKE+ + +CPYF A++ I A
Sbjct: 239 DLGLCGYFENYKKDFVYELIEPGVYTIEELKELCKNYKNRENINTPICPYFCAKKIIEIA 298
Query: 738 KIVVYSYHYLLDPKIANVV--SKEL------ARSSVVVFDEAHNIDNVCVDSLSVRINRR 789
K++V +Y Y++DPK++ + K++ ++ ++VFDEAHNID+VC+++LSV I+R
Sbjct: 299 KVIVLNYQYIIDPKVSKSIFLGKDINNRVNYKKNDIIVFDEAHNIDSVCLEALSVNIDRS 358
Query: 790 TIEKA 794
+ KA
Sbjct: 359 ILNKA 363
>gi|239793449|dbj|BAH72839.1| ACYPI008186 [Acyrthosiphon pisum]
Length = 325
Score = 115 bits (287), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 64/77 (83%)
Query: 850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQP 909
++GK DYGIM+FADKRFAR DKRSKLPKWIQ YLTDN+ NL+ +EA Q++KRWLR +AQP
Sbjct: 236 IRGKMDYGIMVFADKRFARHDKRSKLPKWIQAYLTDNVCNLTVDEAAQMAKRWLRYIAQP 295
Query: 910 FTREDMLGVALLSLDQL 926
E+ +GV+LL ++ L
Sbjct: 296 DPIENQMGVSLLDVNGL 312
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 111/212 (52%), Gaps = 22/212 (10%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S +E+R+D SV RNYG LL+++ VVPDGVVCFF SYLY++SVVA+WYDQG+I+ +
Sbjct: 72 LTSKWESREDSSVARNYGHLLLEMVKVVPDGVVCFFPSYLYMKSVVAAWYDQGLIEKILD 131
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAV 699
KL+FIETQ+ + + K I G+ L S + R K E + DF +
Sbjct: 132 YKLIFIETQNIVVTNHAIKCYAEAIERGKGALLLSVA---RGKVSEGM---DFDHHY--- 182
Query: 700 GREAPL--APGVYSITKLKEMGRELGLCPY------FLARQAIIH-AKIVVYSYHYLLDP 750
GR + P VY+ ++ + E Y FL A+ H A+ V + +D
Sbjct: 183 GRAVIVLGMPYVYTQCRILKARMEYLCSQYQISEGDFLTFDAMRHTAQCVGRAIRGKMDY 242
Query: 751 KIANVVSKELA----RSSVVVFDEAHNIDNVC 778
I K A RS + + +A+ DNVC
Sbjct: 243 GIMVFADKRFARHDKRSKLPKWIQAYLTDNVC 274
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/62 (70%), Positives = 52/62 (83%)
Query: 357 LYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLP 416
++F CLD+S+AIKP+ D F TV+ITSGTLSPLDMYPKILN PVIM S +MTL+R C LP
Sbjct: 1 MHFSCLDASIAIKPILDYFNTVLITSGTLSPLDMYPKILNINPVIMTSLTMTLSRQCFLP 60
Query: 417 MV 418
MV
Sbjct: 61 MV 62
>gi|123399986|ref|XP_001301577.1| helicase [Trichomonas vaginalis G3]
gi|121882775|gb|EAX88647.1| helicase, putative [Trichomonas vaginalis G3]
Length = 546
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 154/296 (52%), Gaps = 27/296 (9%)
Query: 127 LSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQ-SARETDVVL 185
+S+ +++ T++ A + + +E++E + KL++ + ++ + L++ + ET +
Sbjct: 1 MSMYVDQPTLDLAAIGVDAAKERDREIREREKEKLQKAFDKMKDNLKNKDFVSPETLEIF 60
Query: 186 ANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKP 245
++ +P+ IL++ +P +IR + F+ ++ I +L + ++ E P I++K
Sbjct: 61 SHRNIPEHILKKALPSSIRDFDDFIDKSRKLIRFLTSFIQGS----ERPT-----ITTKA 111
Query: 246 APSMI---SEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAER 302
A +++ + A T E R SP + L I SK ++ L E+
Sbjct: 112 ADALMHGETNAVDAPLQTAEGETERY--------SPNSVLGLIYSKTGLDASTLIKMPEQ 163
Query: 303 LASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCL 362
L++ + ++ + +++LV + A+L+ + +GF + VE + PV+ CL
Sbjct: 164 LSNFIVGNKLPDYEKYAALVDVLEFASLIGEFDQGFTVFVENM------MQGPVMQMACL 217
Query: 363 DSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
D + KPV FQ VVITSGTLSPL YPK+L F+PV F+M+ +R CLLP++
Sbjct: 218 DPTFTFKPVVTHFQRVVITSGTLSPLSFYPKMLEFEPVTSAGFTMSFSRQCLLPII 273
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLS-TEEAVQLSKRWLRQMA 907
+L+ K DYG++I AD+R+AR + RS+LP WI E+L + N S T+EA+ ++ ++ QMA
Sbjct: 446 LLRSKKDYGVVIMADRRYARKEVRSQLPHWINEFLDNRAANGSNTDEAIDKTREFMLQMA 505
Query: 908 QPF 910
QPF
Sbjct: 506 QPF 508
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S ++ R + +V YG LL+++ VPDG+V +F SY+Y+ ++ W I+ ++ K
Sbjct: 283 LTSSYKQRSNPNVAIGYGLLLLEMCKTVPDGIVAYFPSYIYMHMLLKEWMSSEIMSDIMK 342
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
KL+FIET +A ++ + +GR L + R + E I D Y +
Sbjct: 343 YKLVFIETPNAEETDNTLANFRNSCDNGRGAVLLGVA---RGRVSEGIDFSDHYGR 395
>gi|55274867|gb|AAV49237.1| TFIIH helicase [Caenorhabditis remanei]
Length = 171
Score = 109 bits (273), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 78/115 (67%), Gaps = 6/115 (5%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + L+ KTDYG+M+FADKRF+R+DKR KL
Sbjct: 45 ARL-EYLRDTFGIRENDFLTFDAMRHTAQCMGRALRSKTDYGLMVFADKRFSRNDKRGKL 103
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKE 930
P+W+QEYL TNLS +EA Q+++RWL MAQPF +E LGV+LL+ + + +++
Sbjct: 104 PRWMQEYLEPASTNLSIDEAAQVARRWLTLMAQPFQKEHQLGVSLLNKEMVQDQQ 158
>gi|344249237|gb|EGW05341.1| TFIIH basal transcription factor complex helicase subunit
[Cricetulus griseus]
Length = 141
Score = 107 bits (267), Expect = 3e-20, Method: Composition-based stats.
Identities = 55/99 (55%), Positives = 71/99 (71%), Gaps = 6/99 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD RE D + + + ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct: 16 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 74
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
P+WIQE+LTD+ NL+ +E VQ++K +LRQMAQPF RED
Sbjct: 75 PRWIQEHLTDSNLNLTVDEGVQVAKYFLRQMAQPFHRED 113
>gi|307103171|gb|EFN51433.1| hypothetical protein CHLNCDRAFT_140146 [Chlorella variabilis]
Length = 121
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 64/83 (77%), Gaps = 5/83 (6%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M ++ L V+FPY +IYPEQ+ YM+EL DAKGHCLLEMP+G GKT +LLSLI +Y
Sbjct: 1 MRFQLEGLTVYFPYHFIYPEQHQYMLEL----DAKGHCLLEMPTGMGKTVTLLSLITSYQ 56
Query: 484 NAHPLDVTKLLYCSRTVPEIEKV 506
HP +V KL+YC+RTVPE+EKV
Sbjct: 57 LPHP-EVGKLIYCTRTVPEMEKV 78
Score = 45.1 bits (105), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 96 KIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVR 130
K++ + S E R VVVF EAHNIDNVC++ LS R
Sbjct: 77 KVSQMESCEFERECVVVFVEAHNIDNVCIEKLSGR 111
Score = 45.1 bits (105), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 751 KIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVR 785
K++ + S E R VVVF EAHNIDNVC++ LS R
Sbjct: 77 KVSQMESCEFERECVVVFVEAHNIDNVCIEKLSGR 111
>gi|300122782|emb|CBK23799.2| unnamed protein product [Blastocystis hominis]
Length = 155
Score = 104 bits (260), Expect = 2e-19, Method: Composition-based stats.
Identities = 57/124 (45%), Positives = 83/124 (66%), Gaps = 11/124 (8%)
Query: 437 YEYIYPEQYAYMVELKKALDA---KGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKL 493
YE IYPEQY YM +LK+ L+ KGH LLEMP+GTGKT + +L +A +++P D+ KL
Sbjct: 19 YESIYPEQYEYMQQLKQVLETSEQKGHALLEMPTGTGKTVCIFALYLAMKHSYP-DLGKL 77
Query: 494 LYCSRTVPEIEKVVEELARLFDYYIKHNE--EINMTGLVLSSRKNLCIHSEF-----ETR 546
+YC+RT+ E+++ +EEL R+ + E ++ G+ LSSR+NLCIH + +TR
Sbjct: 78 IYCTRTIAELKQCMEELKRVVAFRKSKLEYRYRSILGVCLSSRRNLCIHPKIDCINPDTR 137
Query: 547 DDIS 550
DIS
Sbjct: 138 VDIS 141
>gi|76156575|gb|AAX27759.2| SJCHGC09163 protein [Schistosoma japonicum]
Length = 331
Score = 103 bits (257), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 64/84 (76%), Gaps = 3/84 (3%)
Query: 850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQP 909
++GK+DYGIMI ADKR+AR+DKR KLP WIQ L D NLS EEAVQ S+R+LR M QP
Sbjct: 211 IRGKSDYGIMILADKRYARADKRFKLPGWIQSQLQDAFINLSIEEAVQASRRFLRLMGQP 270
Query: 910 FTREDMLGVALLS---LDQLLEKE 930
F ++D LG++LL+ +D+L+ +
Sbjct: 271 FDKDDQLGLSLLTREHVDKLIAQN 294
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
CV+P +V + + + FE+R+DI+VIRNYG LL ++ VVPDG+V FF SY YLES
Sbjct: 32 CVLP-MIVSKGNDQVPMTTKFESREDIAVIRNYGHLLTQLSAVVPDGIVAFFPSYHYLES 90
Query: 624 VVASWYDQGIIDNLQKRKLLFIETQDA 650
A+WY+Q I+D +Q+ KLLF+ETQDA
Sbjct: 91 TFATWYEQHIVDQIQRYKLLFVETQDA 117
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 382 SGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
SGTLSPL+MYP+IL+F PV SF+MTL+R C+LPM+
Sbjct: 1 SGTLSPLEMYPRILDFHPVNTVSFTMTLSRNCVLPMI 37
>gi|300175034|emb|CBK20345.2| unnamed protein product [Blastocystis hominis]
Length = 152
Score = 103 bits (256), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 84/128 (65%), Gaps = 11/128 (8%)
Query: 433 VFFPYEYIYPEQYAYMVELKKALDA---KGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLD 489
+ YE IYPEQY YM +LK+ L+ KGH LLEMP+GTGKT + +L +A +++P D
Sbjct: 12 IIHRYESIYPEQYEYMQQLKQVLETSEQKGHALLEMPTGTGKTVCIFALYLAMKHSYP-D 70
Query: 490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNE--EINMTGLVLSSRKNLCIHSEF---- 543
+ KL+YC+RT+ E+++ +EEL R+ + E ++ G+ LSSR+NLCIH +
Sbjct: 71 LGKLIYCTRTIAELKQCMEELKRVVAFRKSKLEYRYRSILGVCLSSRRNLCIHPKIDCIN 130
Query: 544 -ETRDDIS 550
+TR DIS
Sbjct: 131 PDTRVDIS 138
>gi|238584800|ref|XP_002390673.1| hypothetical protein MPER_10013 [Moniliophthora perniciosa FA553]
gi|215454360|gb|EEB91603.1| hypothetical protein MPER_10013 [Moniliophthora perniciosa FA553]
Length = 343
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 79/115 (68%), Gaps = 7/115 (6%)
Query: 821 ARLVEGLRDAQSARET-----DVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRDA RE+ D + +L+GKTD+G+M+FADKRFAR+DKR+KL
Sbjct: 165 ARL-EYLRDAYRIRESEFLGFDAMRNAAQCVGRVLRGKTDWGLMVFADKRFARADKRAKL 223
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKE 930
P+WI +Y+T+ +NLST+ A+ LSK ++R ++Q E+ GV+L +LD +L+ +
Sbjct: 224 PRWINQYITETASNLSTDMALTLSKLFMRTISQN-PNENQTGVSLWTLDDVLKAQ 277
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 72/107 (67%), Gaps = 5/107 (4%)
Query: 582 SVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRK 641
S FE R+D +V+RN+G +LV+ + +VPDG+V FF SYLY+ES+VA+W D GI++ + K K
Sbjct: 36 SRFEVRNDPAVVRNFGSILVEYSKIVPDGIVAFFPSYLYMESIVAAWNDMGILNEVWKHK 95
Query: 642 LLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENI 687
L+F+ET DA ++ S++ E + D GR L S + R K E I
Sbjct: 96 LIFVETPDANET-SIALENYRRACDNGRGAVLLSVA---RGKVSEGI 138
>gi|336377406|gb|EGO18568.1| hypothetical protein SERLADRAFT_443906 [Serpula lacrymans var.
lacrymans S7.9]
Length = 131
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 59/85 (69%), Gaps = 8/85 (9%)
Query: 465 MPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYI------ 518
MPSGTGKT SLLSLIV+Y +P KL+YCSRTVPEIEK + EL RL +Y I
Sbjct: 1 MPSGTGKTVSLLSLIVSYQQFYPTR-RKLIYCSRTVPEIEKALAELKRLVEYRISCAETP 59
Query: 519 -KHNEEINMTGLVLSSRKNLCIHSE 542
+ +E N TGL L+SRKNLCIH E
Sbjct: 60 EEKEKEQNFTGLGLTSRKNLCIHPE 84
>gi|123451564|ref|XP_001313959.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121895940|gb|EAY01107.1| hypothetical protein TVAG_442190 [Trichomonas vaginalis G3]
Length = 752
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 88/411 (21%), Positives = 170/411 (41%), Gaps = 73/411 (17%)
Query: 3 KERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKE 62
KE D ++ C + T S R N+P D Y++ + SI E
Sbjct: 130 KESDD--IEDLCFNNTCSWSRTHCDYFGNVP--DQYQRIN-------------SIDSFNE 172
Query: 63 MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNV 122
+E CPY+ +R + + K++ S LL+PK + + + L ++ +FD +H +D V
Sbjct: 173 FCKECNACPYYASRAILHNFKVIFISNSELLNPKSPSRILQRLPDTASFIFDNSHYLDKV 232
Query: 123 CVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR--------- 173
C D+LS + +E+A + L+ ++ K + K +++Y + +G++
Sbjct: 233 CCDNLSSYLTLPLLEQAKRELDNLKKRVESTK--NDQKSQDQYENVAKGIKIQDILDLGP 290
Query: 174 ----DAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQV 229
Q P++P + G + +HF+ + +++L V +
Sbjct: 291 KVKIPEQDGYVYSTKFMIPIVPSHQTNRNICGTLWNMDHFLFRVDYLLKFL-----VNLL 345
Query: 230 VQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKV 289
+S TF K S++ +++ Y+ IF+
Sbjct: 346 PCDSEQTFTKYSSTE----LLTLMYQEIFT------------------------------ 371
Query: 290 CIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKA 349
E L F RL+ + + I + +F+ L + + +L+++Y + +I+ + +
Sbjct: 372 --EPLALYFMGPRLSYYIASEGIDQVQEFAPLYAVFNFCSLLATYNESLSIVADFKNPIE 429
Query: 350 PTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPV 400
VP L C D+SLA + D+FQ ITS L +P +L F+P+
Sbjct: 430 AHVPIASLQLSCHDASLAFSMITDKFQNFFITSSALLVPGFFPVLLGFKPL 480
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 11/130 (8%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
+ I DL V FPY IY EQ + M ++K +LDA+G + E P G GK ++ S+ + Y++
Sbjct: 11 VQIVDLQVIFPYRMIYSEQKSLMEQIKLSLDARGPFVFETPPGIGKLIAVFSIYLEYLSK 70
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNE------EINMTGLVLSSRKNLCI 539
HP D+ ++Y + T + E F +K E ++T + L S+ CI
Sbjct: 71 HP-DIGPIVYSTDTYQSYLRAFEA----FQIVVKAREADPDPFNKSITAISLGSKHFQCI 125
Query: 540 HSEFETRDDI 549
+ + DDI
Sbjct: 126 NKTVKESDDI 135
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 19/171 (11%)
Query: 658 KERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKE 717
KE D ++ C + T S R N+P D Y++ + SI E
Sbjct: 130 KESDD--IEDLCFNNTCSWSRTHCDYFGNVP--DQYQRIN-------------SIDSFNE 172
Query: 718 MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNV 777
+E CPY+ +R + + K++ S LL+PK + + + L ++ +FD +H +D V
Sbjct: 173 FCKECNACPYYASRAILHNFKVIFISNSELLNPKSPSRILQRLPDTASFIFDNSHYLDKV 232
Query: 778 CVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 828
C D+LS + +E+A + L+ ++ K + K +++Y + +G++
Sbjct: 233 CCDNLSSYLTLPLLEQAKRELDNLKKRVESTK--NDQKSQDQYENVAKGIK 281
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 589 DISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
+I ++RN LL++ + PDG+V FF S+ L ++V W + +L KL+FIE
Sbjct: 522 NIGIVRNIMALLIESSKATPDGMVVFFPSFKVLNTIVTKWRNTNQQVDLLNNKLIFIEQP 581
Query: 649 DA------LDS--RSVSKERDG 662
D LDS RS+ R G
Sbjct: 582 DPMKASLLLDSFYRSLDNMRGG 603
Score = 43.5 bits (101), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 847 DEILQGKTDYGIMIFADKRFARSDKRSK-LPKWIQEYLTDNLTNLSTEEAVQLSKRWL 903
D IL K+D+ ++ ADKR++ S+ ++ LP W+Q+ LT + T EEA + +++
Sbjct: 674 DTILSSKSDFATILLADKRYSESEILNELLPAWMQKILTPDTTGQGVEEAKETMRKFF 731
>gi|440492759|gb|ELQ75300.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH [Trachipleistophora hominis]
Length = 267
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M I ++P++FPY I PEQ +Y+ E + + +EMP+G+GKT +LS V+Y
Sbjct: 1 MIFKISNIPIYFPYPTISPEQLSYIKETIASFTTTSNLFIEMPAGSGKTICILSAAVSYQ 60
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEF 543
H D + +YC+RTV E EK + EL L Y+K + ++ GL L+SRK+LC++ +
Sbjct: 61 LYHVEDDVRFVYCTRTVQESEKTLVELKTLIA-YVKQHVKVKYMGLGLTSRKHLCVNEDV 119
Query: 544 ETRDDIS 550
+ ++S
Sbjct: 120 QGNIEMS 126
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 53 GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKI 97
GVY+ ++K G+ CPYFL R+A+ + ++ +Y+Y+LDPKI
Sbjct: 220 GVYTFEQIKRKGQYFKFCPYFLTRKALSSSNFLILTYNYVLDPKI 264
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 708 GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKI 752
GVY+ ++K G+ CPYFL R+A+ + ++ +Y+Y+LDPKI
Sbjct: 220 GVYTFEQIKRKGQYFKFCPYFLTRKALSSSNFLILTYNYVLDPKI 264
>gi|340503511|gb|EGR30093.1| regulator of telomere elongation helicase 1, putative
[Ichthyophthirius multifiliis]
Length = 671
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 104/449 (23%), Positives = 203/449 (45%), Gaps = 70/449 (15%)
Query: 5 RDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMG 64
RD + +LT ++ + N C FY+K + E + + I +L++ G
Sbjct: 149 RDQYCLKKEYQNLTDWTLISYCQKAINEHSCKFYQK-NHENLEEIFSTDIMDIEELRQNG 207
Query: 65 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 124
++ G CPYF +R+ I+ Y+Y+ D + A+ + EL +S+++FDEAHNI +
Sbjct: 208 QKNGFCPYFHSRRVKDCVDIIFMPYNYIFDNQNASPFNIELT-NSILIFDEAHNIAKIAE 266
Query: 125 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREE-YARLVEGLR--DAQSARET 181
+S S I + +E I+ L ++ K+ ++ + ++E + + L+ D Q R +
Sbjct: 267 ESTSFSITIKNLEAIETEIKLLREIIQSYKDPNTFRQKKESHKNKINKLQEIDTQGLRSS 326
Query: 182 DVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDI 241
+ D ILQ ++P F +L++FIE +Q++P
Sbjct: 327 NQDC------DLILQHILP--------FKKYLQKFIEN----------IQKNPEN----- 357
Query: 242 SSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFC-- 299
+ ++IS+ R IF E+ +++Q + + T+ ++ ++ +++ L+
Sbjct: 358 ----SETIISKEGRDIFQILENNTIPIQLQ---ENTLDTYFQENNNTFQQKKEGLKITNL 410
Query: 300 AERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAI-IVEPFSDKAPTVPNPVLY 358
E + L+ +E + T L +S K + VEP ++++ +Y
Sbjct: 411 QEYIKKLVMAIEDLSTTQNYGL---DKWMLFLSKVQKLLCVEKVEPENEQSE------IY 461
Query: 359 FCCLDSSLAIKPV-FDRFQTVVITSGTLSPLDMY--------PKILNFQPVIMHSFSMTL 409
CLD S++ + ++++TSGTL+P D + P ILN Q VI + ++ L
Sbjct: 462 MQCLDPSVSFSFIKIKNPHSILLTSGTLAPFDSWELELKIPFPIILNNQHVIDNKKNL-L 520
Query: 410 ARPCL-------LPMVRENYAMGLMIDDL 431
A C+ L +N L++DD+
Sbjct: 521 AGICIKGPLEQELEFTYQNRQKNLILDDV 549
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 97/201 (48%), Gaps = 14/201 (6%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
+V RD + +LT ++ + N C FY+K + E + + I +
Sbjct: 144 TVLASRDQYCLKKEYQNLTDWTLISYCQKAINEHSCKFYQK-NHENLEEIFSTDIMDIEE 202
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L++ G++ G CPYF +R+ I+ Y+Y+ D + A+ + EL +S+++FDEAHNI
Sbjct: 203 LRQNGQKNGFCPYFHSRRVKDCVDIIFMPYNYIFDNQNASPFNIELT-NSILIFDEAHNI 261
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLE---------GTLKEMKEADSAKLREEYARLVE 825
+ +S S I + +E I+ L T ++ KE+ K+ + +
Sbjct: 262 AKIAEESTSFSITIKNLEAIETEIKLLREIIQSYKDPNTFRQKKESHKNKINKLQEIDTQ 321
Query: 826 GLRDAQSARETDVVLANPVLP 846
GLR S ++ D++L + +LP
Sbjct: 322 GLRS--SNQDCDLILQH-ILP 339
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 26/183 (14%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM-- 483
+ ID + ++FPY YP+Q YM ++ ++L+ + LL+ P+GTGKT LL +A++
Sbjct: 42 ITIDGIDIYFPYR-PYPQQIMYMSKVIQSLNQGNNSLLQSPTGTGKTLCLLCATIAWLKK 100
Query: 484 ----NAHPLDVT---KLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKN 536
N +D K++Y SRT +I++VV+EL + + I VL+SR
Sbjct: 101 YREQNQENIDNVPPKKIVYSSRTHSQIQQVVKELKQTI-----YRPRIT----VLASRDQ 151
Query: 537 LCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETR-DDISVIRN 595
C+ E++ D ++I + + + +C + ++ LE +F T DI +R
Sbjct: 152 YCLKKEYQNLTDWTLISYCQKAINEHSCKF------YQKNHENLEEIFSTDIMDIEELRQ 205
Query: 596 YGQ 598
GQ
Sbjct: 206 NGQ 208
>gi|123399989|ref|XP_001301578.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121882776|gb|EAX88648.1| hypothetical protein TVAG_023310 [Trichomonas vaginalis G3]
Length = 84
Score = 89.7 bits (221), Expect = 7e-15, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
IDD+ V FP+ YPEQ YM +LK +LDA G C+LEMPSGTGKT +SLI+AYM+
Sbjct: 4 FFIDDIEVCFPFPQAYPEQIEYMTQLKLSLDAGGPCVLEMPSGTGKTVLFVSLILAYMSQ 63
Query: 486 HPLDVTKLLYCSRTVPEI 503
+ L+YC+RT+P++
Sbjct: 64 RK-NACPLIYCTRTIPKM 80
>gi|260941788|ref|XP_002615060.1| hypothetical protein CLUG_05075 [Clavispora lusitaniae ATCC 42720]
gi|238851483|gb|EEQ40947.1| hypothetical protein CLUG_05075 [Clavispora lusitaniae ATCC 42720]
Length = 315
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+ S FE R+D SV+RNYG LL++ + + PDG+V FF SYLY+ES+++ W G++D + K
Sbjct: 39 ISSRFEIRNDPSVVRNYGSLLIEFSKITPDGMVVFFPSYLYMESIISMWQTMGVLDEVWK 98
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
KL+ +ET DA ++ + +GR L S + R K E I
Sbjct: 99 YKLILVETPDAQETALALETYRKACSNGRGAVLLSVA---RGKVSEGI 143
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 71/111 (63%), Gaps = 8/111 (7%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LRD +E D + + + +L+GK DYGIM+ AD+RF +K+++L
Sbjct: 170 ARL-EFLRDHYQIKENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRF--KNKKNQL 226
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
PKWI + L ++ NLST+ A+ +K++LR +AQP +D GV++ +L+QL
Sbjct: 227 PKWIAQALLESDLNLSTDMALAAAKKFLRTLAQPSNPKDQEGVSVWNLEQL 277
Score = 47.0 bits (110), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 42/96 (43%), Gaps = 31/96 (32%)
Query: 390 MYPKILNFQPVIMHSFSMTLARPCLLPM----------------------VRENYAMGLM 427
MYPK+LNFQ VI S++MTLAR LPM V NY L+
Sbjct: 1 MYPKMLNFQTVIQESYTMTLARRSFLPMIVTKGSDQTSISSRFEIRNDPSVVRNYG-SLL 59
Query: 428 I-------DDLPVFFPYEYIYPEQYAYMVELKKALD 456
I D + VFFP Y+Y E M + LD
Sbjct: 60 IEFSKITPDGMVVFFP-SYLYMESIISMWQTMGVLD 94
>gi|344249239|gb|EGW05343.1| TFIIH basal transcription factor complex helicase subunit
[Cricetulus griseus]
Length = 108
Score = 84.0 bits (206), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/67 (56%), Positives = 51/67 (76%)
Query: 127 LSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLA 186
+SV + RRT+++ N+ TL+ T+ +KE D +LR+EY RLVEGLR+A +ARETD LA
Sbjct: 1 MSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYQRLVEGLREASAARETDAHLA 60
Query: 187 NPVLPDE 193
NPVLPDE
Sbjct: 61 NPVLPDE 67
Score = 84.0 bits (206), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/67 (56%), Positives = 51/67 (76%)
Query: 782 LSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLA 841
+SV + RRT+++ N+ TL+ T+ +KE D +LR+EY RLVEGLR+A +ARETD LA
Sbjct: 1 MSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYQRLVEGLREASAARETDAHLA 60
Query: 842 NPVLPDE 848
NPVLPDE
Sbjct: 61 NPVLPDE 67
>gi|407039328|gb|EKE39586.1| DNA repair helicase, putative [Entamoeba nuttalli P19]
Length = 563
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 139/325 (42%), Gaps = 72/325 (22%)
Query: 109 SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARL 168
+++VFDEAHN+DNV VD+ ++ ++ T+E A ++ L L E L+ EY RL
Sbjct: 7 TLLVFDEAHNVDNVVVDAQTLTLSLDTLELATISLVRLTKLLS--IEESKKPLKNEYKRL 64
Query: 169 VEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQ 228
VEGLR ++ + + + +P + T+ FV +K + + + +LR
Sbjct: 65 VEGLRHSEPTKRIEE------------ENNIPIDTITSIQFVVLMKDIVNFFREKLR--- 109
Query: 229 VVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSK 288
E+P + +Q + E + +K++
Sbjct: 110 ---EAP---------------------------------IHKKQHINEHCSIPIKNVVDS 133
Query: 289 VC----IERKPLRFCAERLASLLRTL--EITNLTD-------FSSLVVITHLATLVSSYT 335
C + + + RL L++ L E D + L ++ A L+ S
Sbjct: 134 FCDSLALTPEVVTLIPLRLHLLIKALGDEYGGRQDVKGDSFYYDDLYLVADFAALLCSCQ 193
Query: 336 KGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKIL 395
+GF+ + + + VL C+D++ AI+P ++F ++V TSGTLSPL Y IL
Sbjct: 194 EGFSYVPDVVKMDKDNCFHSVLNLICVDAANAIQPTLNKFHSIVFTSGTLSPLKTYINIL 253
Query: 396 NFQPV-----IMHSFSMTLARPCLL 415
V I SFS ++ R C L
Sbjct: 254 GLNNVVEEKQITSSFS-SMRRICPL 277
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 48/73 (65%)
Query: 578 LYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNL 637
+ S + R + +I +YG+L+++++ VPDG++CFF SY Y+ ++ W + II+++
Sbjct: 305 ILFSSQYAYRSNRLIIHSYGRLILELSKTVPDGILCFFPSYSYMNICISYWDEMKIIESI 364
Query: 638 QKRKLLFIETQDA 650
KL+F+E+ D+
Sbjct: 365 YFNKLIFVESNDS 377
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 6/83 (7%)
Query: 850 LQGKTDYGIMIFADKRFARSDKR--SKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMA 907
++GK DY + I+ADKR+ +D + S +P+WI + L T++S ++++ L+K +L +M+
Sbjct: 471 IRGKNDYAVAIYADKRYKFNDNKIISSMPQWIVDALEKRFTDISADQSITLAKEFLMKMS 530
Query: 908 QPFTREDML----GVALLSLDQL 926
F + L G L +L+ +
Sbjct: 531 YLFNNQTNLKLQKGKTLWTLEDI 553
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 764 SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARL 823
+++VFDEAHN+DNV VD+ ++ ++ T+E A ++ L L E L+ EY RL
Sbjct: 7 TLLVFDEAHNVDNVVVDAQTLTLSLDTLELATISLVRLTKLLS--IEESKKPLKNEYKRL 64
Query: 824 VEGLRDAQSAR 834
VEGLR ++ +
Sbjct: 65 VEGLRHSEPTK 75
Score = 46.6 bits (109), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 35/53 (66%)
Query: 541 SEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVI 593
S++ R + +I +YG+L+++++ VPDG++CFF SY Y+ D++ +I
Sbjct: 309 SQYAYRSNRLIIHSYGRLILELSKTVPDGILCFFPSYSYMNICISYWDEMKII 361
>gi|70921532|ref|XP_734078.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56506478|emb|CAH82946.1| hypothetical protein PC300239.00.0 [Plasmodium chabaudi chabaudi]
Length = 209
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 57/74 (77%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S + R+D++VI+NYG LLV++ +PDG++ +F SY+Y+E V+++WY+ GII N+ +
Sbjct: 83 LSSQYSLRNDLNVIKNYGFLLVEMCKNIPDGIISYFPSYIYMEHVMSTWYELGIISNILE 142
Query: 640 RKLLFIETQDALDS 653
KL+FIET+D + +
Sbjct: 143 YKLIFIETKDIVST 156
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 55/71 (77%)
Query: 348 KAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSM 407
+A + +PV+ F CLDSS+A+K V +R+++VV+TSGT++PL++YPK+LNF V+ SF M
Sbjct: 3 EATGIYDPVIQFACLDSSIAMKSVLNRYKSVVLTSGTITPLELYPKLLNFSTVLTASFPM 62
Query: 408 TLARPCLLPMV 418
+ R C+ P++
Sbjct: 63 SFDRNCVCPLI 73
>gi|413917668|gb|AFW57600.1| hypothetical protein ZEAMMB73_931460 [Zea mays]
Length = 194
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 56/80 (70%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYG+MIFADKR++R DKRSKLP WI +L D NLST+ A+ +++ +LR+MAQ
Sbjct: 106 VIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIAREFLRRMAQ 165
Query: 909 PFTREDMLGVALLSLDQLLE 928
P+ + G L ++ LE
Sbjct: 166 PYDKAGSGGKKTLLTEEDLE 185
>gi|361125600|gb|EHK97634.1| putative DNA repair helicase RAD3 [Glarea lozoyensis 74030]
Length = 250
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+L+GK DYGIM+ ADKRF R KR++LPKWI E + D +LST+ AV +K++LR MAQ
Sbjct: 113 VLRGKDDYGIMVLADKRFLR--KRTQLPKWINEAILDAEVDLSTDMAVGTAKKFLRTMAQ 170
Query: 909 PFTREDMLGVALLSLDQLLEKEHARAEEEEV 939
PF D GV+ ++ LE + E E +
Sbjct: 171 PFPSLDQDGVSTWRIED-LEAHKEKMENESI 200
>gi|389585879|dbj|GAB68609.1| DNA repair helicase, partial [Plasmodium cynomolgi strain B]
Length = 1101
Score = 79.7 bits (195), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 56/215 (26%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM---- 483
I+D+ V+FPYE +Y QY YM+ + AL K + +LE P+GTGKT LL ++Y+
Sbjct: 23 INDVEVYFPYE-LYDCQYNYMLSVLNALKKKENAILESPTGTGKTLCLLCASISYLVDVM 81
Query: 484 -----------------------------------NAHPLDVTKLLYCSRTVPEIEKVVE 508
A P D K++Y SRT ++++V++
Sbjct: 82 EKKGAFSENINITENKKNISFDFKENENSKGSPAKVAPPSDFPKIIYASRTHSQLKQVIK 141
Query: 509 ELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNY-GQLLVDIACVVP 567
EL + Y+IK+NE+ + +L SR LC+H ++ NY G +L ++
Sbjct: 142 ELKNV--YFIKNNEKYKLLTTILGSRDQLCVH---------NINYNYKGTMLNNMCKRTR 190
Query: 568 DGVVCFFTS---YLY-LESVFETRDDISVIRNYGQ 598
C + + YLY L+ +F T D+ + G+
Sbjct: 191 KNGECMYHNGLKYLYKLKHLFTTPMDVETLSEIGK 225
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S +E R + + ++ G + D+ +P GV+ FF+SY + V +W I + +
Sbjct: 570 LLSTYENRSNDNYMKALGNCIFDLIICIPYGVLIFFSSYSSMTETVNAWKKFKIFEKINS 629
Query: 640 RKLLFI------ETQDALDSRS--VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVC 690
K +F+ E +D LD + K+R G I+ G C S + + + +C
Sbjct: 630 YKTIFVEPNKAAELKDILDQYENIIKKKRKGAILMGVCRGKISEGIDFKDDCCRGVIIC 688
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I K +G+ + CP++ R+ +++ Y+YL + ++ L +S+++ DE
Sbjct: 223 IGKGNSVGQNIHFCPFYATREIQNECHVILLPYNYLFEESTRKILKLNL-ENSIIIIDEG 281
Query: 117 HNIDNVCVDSLSVRI 131
HNI+ V +++S +I
Sbjct: 282 HNIETVAEEAVSFKI 296
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I K +G+ + CP++ R+ +++ Y+YL + ++ L +S+++ DE
Sbjct: 223 IGKGNSVGQNIHFCPFYATREIQNECHVILLPYNYLFEESTRKILKLNL-ENSIIIIDEG 281
Query: 772 HNIDNVCVDSLSVRI 786
HNI+ V +++S +I
Sbjct: 282 HNIETVAEEAVSFKI 296
>gi|156102350|ref|XP_001616868.1| DNA repair helicase [Plasmodium vivax Sal-1]
gi|148805742|gb|EDL47141.1| DNA repair helicase, putative [Plasmodium vivax]
Length = 1103
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 56/215 (26%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM---- 483
I+D+ V+FPYE +Y QY YM+ + AL K + +LE P+GTGKT LL ++Y+
Sbjct: 23 INDVEVYFPYE-LYDCQYNYMLSVLNALKRKENAILESPTGTGKTLCLLCASISYLVDVL 81
Query: 484 -----------------------------------NAHPLDVTKLLYCSRTVPEIEKVVE 508
A P D K++Y SRT ++++V++
Sbjct: 82 EKKGAFSENINITENKKNISFDFKENENSKGSPAKVAPPSDFPKIIYASRTHSQLKQVIK 141
Query: 509 ELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNY-GQLLVDIACVVP 567
EL + Y+IK+NE+ + +L SR LC+H ++ NY G +L ++
Sbjct: 142 ELKNV--YFIKNNEKYKLLTTILGSRDQLCVH---------NINYNYKGTMLNNMCKRTR 190
Query: 568 DGVVCFFTS---YLY-LESVFETRDDISVIRNYGQ 598
C + + YLY L+ +F T D+ + G+
Sbjct: 191 KNGECMYHNGLKYLYKLKHLFTTPMDVETLSEIGK 225
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S +E R + + ++ G + DI +P GV+ FF+SY + V +W I + +
Sbjct: 570 LLSTYENRSNDNYVKALGNCIFDIIICIPYGVLIFFSSYSSMTETVNAWKKFKIFEKINS 629
Query: 640 RKLLFI------ETQDALDSRS--VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVC 690
K +F+ E +D LD + K+R G I+ G C S + + + +C
Sbjct: 630 YKTIFVEPNKASELKDILDQYENIIKKKRKGAILMGVCRGKISEGIDFKDDCCRGVIIC 688
Score = 47.4 bits (111), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I K +G+ + CP++ R+ +++ Y+YL + ++ L +S+++ DE
Sbjct: 223 IGKGNSVGQNIHFCPFYATREIQNECHVILLPYNYLFEESTRKILKLNL-ENSIIIIDEG 281
Query: 117 HNIDNVCVDSLSVRI 131
HNI+NV +++S +I
Sbjct: 282 HNIENVAEEAVSFKI 296
Score = 47.4 bits (111), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I K +G+ + CP++ R+ +++ Y+YL + ++ L +S+++ DE
Sbjct: 223 IGKGNSVGQNIHFCPFYATREIQNECHVILLPYNYLFEESTRKILKLNL-ENSIIIIDEG 281
Query: 772 HNIDNVCVDSLSVRI 786
HNI+NV +++S +I
Sbjct: 282 HNIENVAEEAVSFKI 296
>gi|91080377|ref|XP_975038.1| PREDICTED: similar to fanconi anemia group J protein [Tribolium
castaneum]
Length = 750
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Query: 35 CDFYEKFDAVGREAPLAP-GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
C +Y++ + P++ + I + ++GRE CPY +AR+ + +V Y+YLL
Sbjct: 149 CKYYQRIERASHVPPVSDLNIIDIEDVVKLGRECDFCPYHMARELKNRSDVVFMPYNYLL 208
Query: 94 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 150
DP+ + + E+ ++++FDEAHNI+ +C DS+SV+I ++ AV +++++ L
Sbjct: 209 DPRTSKNMDVEIF-GNIIIFDEAHNIEKICEDSVSVQIKSSDVDSAVEDVESVNEVL 264
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Query: 690 CDFYEKFDAVGREAPLAP-GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
C +Y++ + P++ + I + ++GRE CPY +AR+ + +V Y+YLL
Sbjct: 149 CKYYQRIERASHVPPVSDLNIIDIEDVVKLGRECDFCPYHMARELKNRSDVVFMPYNYLL 208
Query: 749 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 805
DP+ + + E+ ++++FDEAHNI+ +C DS+SV+I ++ AV +++++ L
Sbjct: 209 DPRTSKNMDVEIF-GNIIIFDEAHNIEKICEDSVSVQIKSSDVDSAVEDVESVNEVL 264
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S FE R + +++ G ++ ++ V+PDGV+ FF SY+ ++ + W + G D++ +
Sbjct: 484 LNSNFENRSNPKYLQSLGLVISNLIRVIPDGVLIFFPSYVIMQKTIEHWQNDGTWDSINR 543
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVD 666
K ++IE +D ++ + E KI D
Sbjct: 544 TKPIYIEPKDKIEFATAMSEYYAKIQD 570
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 24/132 (18%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
+ I +PV FP+ Y Q YM ++ L+ + + +LE P+GTGKT SLL +A++ A
Sbjct: 4 ITIRGVPVKFPFA-PYDIQTKYMEKVIDCLENRQNGILESPTGTGKTLSLLCASLAWLEA 62
Query: 486 H---------------PLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLV 530
P+ + +++Y SRT ++ + ++E+ R ++K V
Sbjct: 63 RREKFAAQPKKCDDSPPITLPRIIYASRTHTQLSQAMQEMKRTAYNHLK--------ACV 114
Query: 531 LSSRKNLCIHSE 542
L SR +CI E
Sbjct: 115 LGSRDQMCIDPE 126
>gi|270006398|gb|EFA02846.1| regulator of telomere elongation helicase 1 [Tribolium castaneum]
Length = 1338
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Query: 35 CDFYEKFDAVGREAPLAP-GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
C +Y++ + P++ + I + ++GRE CPY +AR+ + +V Y+YLL
Sbjct: 737 CKYYQRIERASHVPPVSDLNIIDIEDVVKLGRECDFCPYHMARELKNRSDVVFMPYNYLL 796
Query: 94 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 150
DP+ + + E+ ++++FDEAHNI+ +C DS+SV+I ++ AV +++++ L
Sbjct: 797 DPRTSKNMDVEIF-GNIIIFDEAHNIEKICEDSVSVQIKSSDVDSAVEDVESVNEVL 852
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Query: 690 CDFYEKFDAVGREAPLAP-GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
C +Y++ + P++ + I + ++GRE CPY +AR+ + +V Y+YLL
Sbjct: 737 CKYYQRIERASHVPPVSDLNIIDIEDVVKLGRECDFCPYHMARELKNRSDVVFMPYNYLL 796
Query: 749 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 805
DP+ + + E+ ++++FDEAHNI+ +C DS+SV+I ++ AV +++++ L
Sbjct: 797 DPRTSKNMDVEIF-GNIIIFDEAHNIEKICEDSVSVQIKSSDVDSAVEDVESVNEVL 852
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S FE R + +++ G ++ ++ V+PDGV+ FF SY+ ++ + W + G D++ +
Sbjct: 1072 LNSNFENRSNPKYLQSLGLVISNLIRVIPDGVLIFFPSYVIMQKTIEHWQNDGTWDSINR 1131
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVD 666
K ++IE +D ++ + E KI D
Sbjct: 1132 TKPIYIEPKDKIEFATAMSEYYAKIQD 1158
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 17/130 (13%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V I PDG L ++ RD+ + + + GQ+++++ ++P GV+ FF
Sbjct: 253 QVCVKILTKGPDGEP--------LNCNYQNRDNPNYLMSLGQVVLNLIRIIPHGVLIFFP 304
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALD-----SRSVSKERD----GKIVDG 667
SY ++ W + GI D + K K +F+E +D S SK +D G I G
Sbjct: 305 SYPIMQKCQQYWQESGIWDGINKIKAIFVEPKDKNSFTFAMSEYYSKVKDPNYKGAIFMG 364
Query: 668 RCHSLTSSSV 677
C S +
Sbjct: 365 VCRGKVSEGL 374
>gi|307106006|gb|EFN54253.1| hypothetical protein CHLNCDRAFT_14687, partial [Chlorella
variabilis]
Length = 103
Score = 77.0 bits (188), Expect = 5e-11, Method: Composition-based stats.
Identities = 41/94 (43%), Positives = 60/94 (63%), Gaps = 6/94 (6%)
Query: 821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
ARL E LR+A RE D + + V +++ K DYG+M+FADKR+ R DKR KL
Sbjct: 11 ARL-EYLREAFQIRENDYLAFDAVRQAAQCVGRVIRSKADYGLMVFADKRYQRHDKRDKL 69
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQP 909
P WI ++L D+ NLST+ + +++ ++R MAQP
Sbjct: 70 PAWITQHLKDSHLNLSTDMLLCIARDFMRAMAQP 103
>gi|221060536|ref|XP_002260913.1| DNA-repair helicase [Plasmodium knowlesi strain H]
gi|193810987|emb|CAQ42885.1| DNA-repair helicase, putative [Plasmodium knowlesi strain H]
Length = 1106
Score = 76.3 bits (186), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 42/153 (27%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM---- 483
I+D+ V+FPYE +Y QY YM+ + AL K + +LE P+GTGKT LL ++Y+
Sbjct: 23 INDVEVYFPYE-LYDCQYNYMLSVLNALKKKENAILESPTGTGKTLCLLCASISYLVDVL 81
Query: 484 ----------------------------------NAHPL-DVTKLLYCSRTVPEIEKVVE 508
A P D K++Y SRT ++++V++
Sbjct: 82 EKKGAFSENINITENKKNISLDFKENENSRSSPPKASPANDFPKIIYASRTHSQLKQVIK 141
Query: 509 ELARLFDYYIKHNEEINMTGLVLSSRKNLCIHS 541
EL + Y+IK+NE+ + +L SR LC+H+
Sbjct: 142 ELKNV--YFIKNNEKYKLLTTILGSRDQLCVHN 172
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 8/119 (6%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S +E R + + I+ G + D+ +P GV+ FF+SY + V +W I + +
Sbjct: 570 LLSTYENRSNDNYIQALGNCIFDLIICIPYGVLIFFSSYSSMTETVNAWKKFKIFEKINS 629
Query: 640 RKLLFIETQDALDSRS--------VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVC 690
K +F+E A + + + K+R G I+ G C S + + + +C
Sbjct: 630 YKTIFVEPNKAAELKDILQQYEYIIKKKRKGAILMGVCRGKISEGIDFKDDCCRGVIIC 688
Score = 46.6 bits (109), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I K +G+ + CP++ R+ +++ Y+YL + ++ L +S+++ DE
Sbjct: 223 IGKGNSVGQNIHFCPFYATREIQNECHVILLPYNYLFEESTRKILKLNL-ENSIIIIDEG 281
Query: 117 HNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLRE 163
HNI+ V +++S +I + + I+ L ++K+ D ++RE
Sbjct: 282 HNIETVAEEAVSFKIKDSDLNLFLDGIKATLTVLDKVKDVD-KEMRE 327
Score = 46.6 bits (109), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I K +G+ + CP++ R+ +++ Y+YL + ++ L +S+++ DE
Sbjct: 223 IGKGNSVGQNIHFCPFYATREIQNECHVILLPYNYLFEESTRKILKLNL-ENSIIIIDEG 281
Query: 772 HNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLRE 818
HNI+ V +++S +I + + I+ L ++K+ D ++RE
Sbjct: 282 HNIETVAEEAVSFKIKDSDLNLFLDGIKATLTVLDKVKDVD-KEMRE 327
>gi|260789809|ref|XP_002589937.1| hypothetical protein BRAFLDRAFT_231064 [Branchiostoma floridae]
gi|229275123|gb|EEN45948.1| hypothetical protein BRAFLDRAFT_231064 [Branchiostoma floridae]
Length = 823
Score = 76.3 bits (186), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 3/128 (2%)
Query: 27 KAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVV 86
KA + +C FY D +E AP I L ++G++ +CPYF+AR+ A I+
Sbjct: 172 KAKTSSRLCTFYNNLDGNEKEFTEAP--LDIEDLVKVGKKHKVCPYFMARELKSSADIIF 229
Query: 87 YSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 146
Y+YLLDPK S +L +S +VVFDEAHN++ +C +S S + + V + L
Sbjct: 230 MPYNYLLDPKSRKAHSVDL-KSHIVVFDEAHNLEKMCEESSSFDLTSYDLASCVEELDNL 288
Query: 147 EGTLKEMK 154
++ E++
Sbjct: 289 HKSVAEIE 296
Score = 76.3 bits (186), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 3/128 (2%)
Query: 682 KAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVV 741
KA + +C FY D +E AP I L ++G++ +CPYF+AR+ A I+
Sbjct: 172 KAKTSSRLCTFYNNLDGNEKEFTEAP--LDIEDLVKVGKKHKVCPYFMARELKSSADIIF 229
Query: 742 YSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 801
Y+YLLDPK S +L +S +VVFDEAHN++ +C +S S + + V + L
Sbjct: 230 MPYNYLLDPKSRKAHSVDL-KSHIVVFDEAHNLEKMCEESSSFDLTSYDLASCVEELDNL 288
Query: 802 EGTLKEMK 809
++ E++
Sbjct: 289 HKSVAEIE 296
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ + + PDGV L S +E R+ I + G +V+ A +VP+G++ FF
Sbjct: 526 QVWLGMVTKGPDGV--------RLNSSYENRNSTDYINSLGNAIVNFARIVPNGLLVFFP 577
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY + + W D GI + + + K + +E
Sbjct: 578 SYPVMNKCLEVWQDSGISNRISQYKTMVVE 607
Score = 43.5 bits (101), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN----MTGLVLSSRKNLCIHSEFET 545
V ++ S T+ +E E+ F ++++ I G+V + ++S +E
Sbjct: 488 VRSIILTSGTLSPLESFTAEMHIDFPVHLENPHVIERHQVWLGMVTKGPDGVRLNSSYEN 547
Query: 546 RDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISV---IRNYGQLLVD 602
R+ I + G +V+ A +VP+G++ FF SY + E D + I Y ++V+
Sbjct: 548 RNSTDYINSLGNAIVNFARIVPNGLLVFFPSYPVMNKCLEVWQDSGISNRISQYKTMVVE 607
Score = 43.1 bits (100), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 825 EGLRDAQSARETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLT 884
+GL Q R+ N + +++ + DYG ++ D RF +D R++LP W++ Y T
Sbjct: 687 KGLTGRQWYRQQASRAVNQAI-GRVIRHRQDYGAILLCDHRFTYADARAQLPSWVRPYAT 745
Query: 885 D-NLTNLSTEEAVQLSKRWLRQMAQPFTR 912
N + ++ + K R + QP +
Sbjct: 746 TYNTFGHAIKDLISFFKTADRTLPQPVAK 774
>gi|294896832|ref|XP_002775733.1| helicase, putative [Perkinsus marinus ATCC 50983]
gi|239881998|gb|EER07549.1| helicase, putative [Perkinsus marinus ATCC 50983]
Length = 184
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S F++R D V + YG LL ++ VVPDGVVCFFTS ++++ VV +WYD G + L
Sbjct: 50 LSSSFQSRKDEEVSKCYGTLLEELVQVVPDGVVCFFTSKVFMQQVVRTWYDSGTLARLST 109
Query: 640 RKLLFIETQDALDS 653
K++F ET D + +
Sbjct: 110 HKVVFFETDDVVST 123
Score = 41.2 bits (95), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 379 VITSGTLSPLDMYPKILNFQPVIM-HSFSMTLARPCLLPMV 418
V+TSGTLSPL MY K+L V++ + ++L R C+ P++
Sbjct: 1 VLTSGTLSPLSMYSKLLGLDRVVVSEALDISLERDCIRPLI 41
>gi|380006443|gb|AFD29612.1| RTEL1 [Schmidtea mediterranea]
Length = 1057
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 1/124 (0%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY +F+ + I L +G++ +CPYFL+R+ A I Y+YLLD
Sbjct: 169 CFFYNQFEKAKEILSSETKIADIEDLLTIGKKKSVCPYFLSREMFDSADITFMPYNYLLD 228
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 154
KI + + L + ++V+FDEAHNI+ VC DS SV++ I + ++ L + ++
Sbjct: 229 SKIRRLYNINL-KGNIVIFDEAHNIEQVCEDSASVQLTSINIASCIEELKVLGEFIYSIQ 287
Query: 155 EADS 158
D+
Sbjct: 288 STDA 291
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 1/124 (0%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY +F+ + I L +G++ +CPYFL+R+ A I Y+YLLD
Sbjct: 169 CFFYNQFEKAKEILSSETKIADIEDLLTIGKKKSVCPYFLSREMFDSADITFMPYNYLLD 228
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 809
KI + + L + ++V+FDEAHNI+ VC DS SV++ I + ++ L + ++
Sbjct: 229 SKIRRLYNINL-KGNIVIFDEAHNIEQVCEDSASVQLTSINIASCIEELKVLGEFIYSIQ 287
Query: 810 EADS 813
D+
Sbjct: 288 STDA 291
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQ 598
I E E R+ S + N Q++V + DG L S + TR+ IS + G
Sbjct: 499 IKFEVELRN--SHVINADQMMVSVCTKGADGEP--------LNSSYLTREKISYTNSLGN 548
Query: 599 LLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+++++ ++P G++ F SY + + W I +++ + K L +E QD
Sbjct: 549 SILNLSKIIPRGLLVVFPSYGMMRKCIERWESCDIYNSMMQHKQLIVEPQD 599
>gi|321469304|gb|EFX80285.1| hypothetical protein DAPPUDRAFT_128417 [Daphnia pulex]
Length = 892
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 13/155 (8%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKE + + CH+ T++ C F+ DA E V I L
Sbjct: 147 VSKETNNAVKLHMCHARTTTRT------------CYFHTNLDAKKEEPDFKMDVLDIEDL 194
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+G++ CPYF+ ++ A I+ Y+YLLDPK+ + + EL + ++V+FDEAHN++
Sbjct: 195 VTLGKKHSACPYFMTKEIRKGADIIFMPYNYLLDPKVRKIHNIEL-QGNIVIFDEAHNVE 253
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKE 155
+C +S S+ + I V + L+ MK+
Sbjct: 254 KMCEESSSIELRSLDIALCVDEVTQRYFLLQVMKK 288
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 13/155 (8%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKE + + CH+ T++ C F+ DA E V I L
Sbjct: 147 VSKETNNAVKLHMCHARTTTRT------------CYFHTNLDAKKEEPDFKMDVLDIEDL 194
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
+G++ CPYF+ ++ A I+ Y+YLLDPK+ + + EL + ++V+FDEAHN++
Sbjct: 195 VTLGKKHSACPYFMTKEIRKGADIIFMPYNYLLDPKVRKIHNIEL-QGNIVIFDEAHNVE 253
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKE 810
+C +S S+ + I V + L+ MK+
Sbjct: 254 KMCEESSSIELRSLDIALCVDEVTQRYFLLQVMKK 288
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 27/144 (18%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+LV + PDG L+S ++ R + +++ G+ + A VVPDG++ FF
Sbjct: 506 QVLVGVVTHGPDGT--------QLDSSYKNRSNSQYVQSLGRTIRSTAQVVPDGLLVFFP 557
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIET------QDALD---SRSVSKERDGKIVDG 667
SY +++ +W G+ D + + K +F+E Q+A+ + S++R G
Sbjct: 558 SYPVMKACQEAWQLSGLWDAINQVKPIFVEPNSKEGFQEAMTGFYNAVASEDRKGACFMA 617
Query: 668 RCHSLTSSSVRDRHKAGENIPVCD 691
C R K E + CD
Sbjct: 618 VC----------RGKVSEGLDFCD 631
>gi|390361889|ref|XP_003730027.1| PREDICTED: regulator of telomere elongation helicase 1-like
[Strongylocentrotus purpuratus]
Length = 466
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 27 KAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVV 86
+A N +C F+ D E + G+ I L ++G +CPY++AR+ A I+
Sbjct: 178 RAKVNAKMCHFHNNLDNKKGEKAFSEGILDIEDLVKLGNAHKVCPYYMARELKTSADIIF 237
Query: 87 YSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 128
Y+YLLDPK + EL + ++++FDEAHN++ +C +S S
Sbjct: 238 MPYNYLLDPKSRRIHGIEL-QGNIIIFDEAHNVERMCEESAS 278
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 682 KAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVV 741
+A N +C F+ D E + G+ I L ++G +CPY++AR+ A I+
Sbjct: 178 RAKVNAKMCHFHNNLDNKKGEKAFSEGILDIEDLVKLGNAHKVCPYYMARELKTSADIIF 237
Query: 742 YSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 783
Y+YLLDPK + EL + ++++FDEAHN++ +C +S S
Sbjct: 238 MPYNYLLDPKSRRIHGIEL-QGNIIIFDEAHNVERMCEESAS 278
>gi|358341159|dbj|GAA28295.2| regulator of telomere elongation helicase 1 [Clonorchis sinensis]
Length = 1325
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 76/131 (58%), Gaps = 9/131 (6%)
Query: 651 LDSRSVS--KERDGKIVDGRCHSLTSSSVRDRHKAGE-NIPVCDFYEKFDAVGREAPL-- 705
+ SR+VS RD + +SL SSS + G CD+Y FD + R++ +
Sbjct: 84 IRSRNVSVIGSRDQLCLLPEVNSLDSSSAKIFACRGRVQTRTCDYYRNFD-MKRDSLMNT 142
Query: 706 --APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARS 763
A GV I L ++G+ G CPY+++R++ A+I+ Y+YLLDPKI + + EL ++
Sbjct: 143 IKAEGVVDIEDLVKLGKSTGCCPYYMSRESKTDAEIIFTPYNYLLDPKIRKLYNIEL-QN 201
Query: 764 SVVVFDEAHNI 774
+ V+FDEAHNI
Sbjct: 202 TAVIFDEAHNI 212
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 59/90 (65%), Gaps = 6/90 (6%)
Query: 34 VCDFYEKFDAVGREAPL----APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 89
CD+Y FD + R++ + A GV I L ++G+ G CPY+++R++ A+I+ Y
Sbjct: 125 TCDYYRNFD-MKRDSLMNTIKAEGVVDIEDLVKLGKSTGCCPYYMSRESKTDAEIIFTPY 183
Query: 90 HYLLDPKIANVVSKELARSSVVVFDEAHNI 119
+YLLDPKI + + EL +++ V+FDEAHNI
Sbjct: 184 NYLLDPKIRKLYNIEL-QNTAVIFDEAHNI 212
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S + TRD + G LV+I +VP G++ FFTSY + V +W ++ + D + +
Sbjct: 440 LNSSYATRDKPEYRTSLGLTLVEIIQIVPAGLLVFFTSYGMMSQCVDAWKNEQLYDKMLR 499
Query: 640 RKLLFIETQDALD-SRSVSKERD 661
K +F+E +D + ++ S RD
Sbjct: 500 YKRIFVEPRDKVQFAKVFSDYRD 522
>gi|124808195|ref|XP_001348254.1| DNA-repair helicase, putative [Plasmodium falciparum 3D7]
gi|23497145|gb|AAN36693.1| DNA-repair helicase, putative [Plasmodium falciparum 3D7]
Length = 1160
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 102/217 (47%), Gaps = 63/217 (29%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM---- 483
I+D+ V+FPYE +Y QY YM+ + AL + + +LE P+GTGKT LL ++Y+
Sbjct: 24 INDIEVYFPYE-LYDCQYNYMLSVLSALKKRENAILESPTGTGKTLCLLCASISYVVDIL 82
Query: 484 --NAH-------------------------PLDVT-----KLLYCSRTVPEIEKVVEELA 511
H P V K++Y SRT ++++V++EL
Sbjct: 83 EKKGHFNENINISENNKNISLEFGKSNESVPKKVVANEFPKIIYASRTHSQLKQVIKELK 142
Query: 512 RLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNY-GQLLVDIA------- 563
+ Y+IK+NE+ + +L SR LC+H ++ NY G LL ++
Sbjct: 143 NV--YFIKNNEKYKLLTTILGSRDQLCVH---------NINYNYKGTLLNNMCKRTRKNG 191
Query: 564 -CVVPDGVVCFFTSYLY-LESVFETRDDISVIRNYGQ 598
C+ +G+ YLY L+ +F T D+ + G+
Sbjct: 192 ECIYHNGL-----KYLYKLKHLFTTPMDVETLSEIGK 223
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S +E R + + IR+ G + DI +P GV+ FF+SY + V SW I D +
Sbjct: 613 LLSTYENRANENYIRSLGNCIFDIIVCIPYGVLIFFSSYSSMTETVNSWKKMKIYDKINT 672
Query: 640 RKLLFIETQDALDSRS--------VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVC 690
K +F+E A D + + K+R G I+ G C S + + + +C
Sbjct: 673 YKTIFVEPNKATDLKDILDQYEILIKKKRKGAILMGVCRGKISEGIDFKDDCCRAVIIC 731
Score = 47.4 bits (111), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 79/174 (45%), Gaps = 21/174 (12%)
Query: 621 LESVVASWYDQGIIDNLQKRKLL--FIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVR 678
L+ V+ + I N +K KLL + ++D L +++ G +++ C R
Sbjct: 134 LKQVIKELKNVYFIKNNEKYKLLTTILGSRDQLCVHNINYNYKGTLLNNMCK-------R 186
Query: 679 DRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGR------ELGLCPYFLARQ 732
R K GE C ++ + + L + L E+G+ + CP++ R+
Sbjct: 187 TR-KNGE----CIYHNGLKYLYKLKHLFTTPMDVETLSEIGKGNSVGQNIHFCPFYATRE 241
Query: 733 AIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
I++ Y+YL + ++ L +S+++ DE HNI+NV +++S ++
Sbjct: 242 IQNECHIILLPYNYLFEESTRKILKLNL-ENSIIIIDEGHNIENVAEEAVSFKL 294
Score = 46.2 bits (108), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I K +G+ + CP++ R+ I++ Y+YL + ++ L +S+++ DE
Sbjct: 221 IGKGNSVGQNIHFCPFYATREIQNECHIILLPYNYLFEESTRKILKLNL-ENSIIIIDEG 279
Query: 117 HNIDNVCVDSLSVRI 131
HNI+NV +++S ++
Sbjct: 280 HNIENVAEEAVSFKL 294
>gi|82752532|ref|XP_727340.1| DNA repair helicase [Plasmodium yoelii yoelii 17XNL]
gi|23483134|gb|EAA18905.1| DNA repair helicase, putative [Plasmodium yoelii yoelii]
Length = 1069
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 38/149 (25%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM---- 483
I+D+ V FPYE +Y QY YM+ + AL K + +LE P+GTGKT LL ++Y+
Sbjct: 23 INDVEVCFPYE-LYDCQYNYMLSVLNALKKKENAILESPTGTGKTLCLLCASISYLVNVL 81
Query: 484 -------------------------------NAHPLDVTKLLYCSRTVPEIEKVVEELAR 512
A D K++Y SRT ++++V++EL
Sbjct: 82 EKKGHFNESINIRENKSNVSFGFKENDNGPKKAIKADYPKIIYASRTHSQLKQVIKELKN 141
Query: 513 LFDYYIKHNEEINMTGLVLSSRKNLCIHS 541
+ Y+IK+NE+ + +L SR LC+H+
Sbjct: 142 V--YFIKNNEKYKLLTTILGSRDQLCVHN 168
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 569 GVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW 628
G + + + L L S +E R + + I+ G + DI +P GV+ FF+SY + VA+W
Sbjct: 558 GCMTHYNNQLLL-STYENRSNENYIKALGNCIFDIIACIPFGVLIFFSSYSSMTETVATW 616
Query: 629 YDQGIIDNLQKRKLLFIETQDALDSRS--------VSKERDGKIVDGRCHSLTSSSVRDR 680
I D + K +F+E A D + + K+R G I+ G C S + +
Sbjct: 617 KKLKIFDKINSYKTIFVEPNKAADLKDILFQYENIIKKKRKGAILMGVCRGKISEGIDFK 676
Query: 681 HKAGENIPVC 690
+ +C
Sbjct: 677 DDCCRGVIIC 686
Score = 47.8 bits (112), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 79/175 (45%), Gaps = 22/175 (12%)
Query: 621 LESVVASWYDQGIIDNLQKRKLL--FIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVR 678
L+ V+ + I N +K KLL + ++D L ++S G +++ C +
Sbjct: 132 LKQVIKELKNVYFIKNNEKYKLLTTILGSRDQLCVHNISYNCKGTMLNNMCKRV------ 185
Query: 679 DRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGR-------ELGLCPYFLAR 731
K+GE C ++ + + L + L E+G+ + CP++ R
Sbjct: 186 --RKSGE----CMYHNGLKHLYKYKHLFTTPMDVETLNEIGKGNNSVGQNIHFCPFYATR 239
Query: 732 QAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
+ +++ Y+YL + ++ +L + +++ DE HNI+NV +++S +I
Sbjct: 240 EIQNECHVILLPYNYLFEENTRRILKLDL-ENCIIIIDEGHNIENVAEEAVSFKI 293
Score = 44.3 bits (103), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 63 MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNV 122
+G+ + CP++ R+ +++ Y+YL + ++ +L + +++ DE HNI+NV
Sbjct: 226 VGQNIHFCPFYATREIQNECHVILLPYNYLFEENTRRILKLDL-ENCIIIIDEGHNIENV 284
Query: 123 CVDSLSVRI 131
+++S +I
Sbjct: 285 AEEAVSFKI 293
>gi|224076637|ref|XP_002196566.1| PREDICTED: Fanconi anemia group J protein homolog [Taeniopygia
guttata]
Length = 1249
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 29 GENIPVCDFYEKFDAVGREAPLAPGV-----YSITKLKEMGRELGLCPYFLARQAIIHAK 83
G++ C +Y + + L P + I L +GR+L CPYF AR+ ++ A
Sbjct: 316 GKHGKSCSYYHGVHKLSEQHALQPAAGLCQAWDIEDLVSLGRKLRACPYFAARELMVGAD 375
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKA 139
IV Y+YLLDP+I + + L + VV+ DEAHNI++ +S+S + R ++ A
Sbjct: 376 IVFCPYNYLLDPQIRDSMDINL-KDQVVILDEAHNIEDCARESVSYGVTERQLQAA 430
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 684 GENIPVCDFYEKFDAVGREAPLAPGV-----YSITKLKEMGRELGLCPYFLARQAIIHAK 738
G++ C +Y + + L P + I L +GR+L CPYF AR+ ++ A
Sbjct: 316 GKHGKSCSYYHGVHKLSEQHALQPAAGLCQAWDIEDLVSLGRKLRACPYFAARELMVGAD 375
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKA 794
IV Y+YLLDP+I + + L + VV+ DEAHNI++ +S+S + R ++ A
Sbjct: 376 IVFCPYNYLLDPQIRDSMDINL-KDQVVILDEAHNIEDCARESVSYGVTERQLQAA 430
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
I + + FP + YP Q A M + K L+++ HCLLE P+G+GK+ +LL +++ A
Sbjct: 10 IGGVKILFPCK-AYPSQLAMMNAIVKGLNSRQHCLLESPTGSGKSLALLCSALSWQQA 66
>gi|195470104|ref|XP_002099973.1| GE16425 [Drosophila yakuba]
gi|229891631|sp|B4PZB4.1|RTEL1_DROYA RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|194187497|gb|EDX01081.1| GE16425 [Drosophila yakuba]
Length = 985
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 112/234 (47%), Gaps = 33/234 (14%)
Query: 51 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 110
P + I L ++G+ L +CPYF +R+ + A I Y+YLLDPK EL +++
Sbjct: 190 GPSIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELG-NTI 248
Query: 111 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL-----EGTLKEMKEADSAKLR-EE 164
V+ DEAHNI+ +C +S SV+I + A+ ++ + G ++M + ++
Sbjct: 249 VILDEAHNIEKICEESASVQIKSSDVAMAIEDVTHIMQVFASGESQDMGGDEPKDFTLDD 308
Query: 165 YARLVEGLRDAQSARETDVVLANPV----LPDEILQEVVP------GNIRTAEHFVGFLK 214
L E L + + A + VV+ N V P ++ E++ GN+ T V L
Sbjct: 309 LTLLKEMLLEFEKAIDA-VVVENAVEGTTFPASMMYELLGKANFTYGNVAT---IVSLLD 364
Query: 215 RFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRL 268
+ ++YL + QQ+ TF +M+S+ +F+ +E + +++
Sbjct: 365 KLVQYL--LVASQQMTIRKGGTF----------TMLSDLLTIVFANKEDVMSKV 406
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 706 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 765
P + I L ++G+ L +CPYF +R+ + A I Y+YLLDPK EL +++
Sbjct: 190 GPSIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELG-NTI 248
Query: 766 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
V+ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 249 VILDEAHNIEKICEESASVQIKSSDVAMAIEDV 281
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 66/155 (42%), Gaps = 48/155 (30%)
Query: 427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM--- 483
+I +PV FP+E YP Q AYM ++ + L + +LE P+GTGKT SLL +A++
Sbjct: 5 LIAGIPVHFPFE-PYPVQRAYMEKVIQCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTR 63
Query: 484 ------------------------------------NAHPLDVTKLLYCSRTVPEIEKVV 507
A+ V K++Y SRT ++ + +
Sbjct: 64 QSEHQQQMVKMEKADFTGLGGGAAGGDLSELAKTMGRANNWGVPKVIYASRTHSQLTQAM 123
Query: 508 EELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
EL R NM +VL SR LCIH E
Sbjct: 124 RELKR--------TAYANMRSVVLGSRDQLCIHPE 150
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S + RD+ I + GQ +++++ +VPDG++ FF SY L V +W G+ ++
Sbjct: 526 LISNYANRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNKCVDAWQASGLWADISV 585
Query: 640 RKLLFIE 646
+K +F+E
Sbjct: 586 KKPIFLE 592
>gi|308163435|gb|EFO65772.1| TFIIH basal transcription factor complex helicase subunit [Giardia
lamblia P15]
Length = 841
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 145/335 (43%), Gaps = 49/335 (14%)
Query: 69 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 128
+CPYF R+ + A I+V SY+Y+LDPK A + L ++++++ DEAHN++ D++S
Sbjct: 219 VCPYFANRRLLHTADIIVGSYNYVLDPKCAGPLGAILDKNTLLIIDEAHNLEYAACDAMS 278
Query: 129 VRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANP 188
+ ++ + + +I + ++ + + L+ R ++ ++ +L +
Sbjct: 279 MHLSYKLVVDCEQSIHAMSASIAHSTRPPPPPFSPDRS-LLRKERAIKTVQQDSRLLFSG 337
Query: 189 VLPDEI--LQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPA 246
P ++ L +RT + F+ L R + LK +L + KD+ S P
Sbjct: 338 SAPADVLLLSSESYAAVRTPQQFLSGLLRIVRLLKEQLSDR---------LTKDVVSLPH 388
Query: 247 PSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASL 306
+++ R F TE L Q SP +L S CI + L L
Sbjct: 389 MDVLN-LVRLQFVTESFL----------QLSPE-YLHYYQSYYCIFDR-------NLPQL 429
Query: 307 LRTLEITNLTDFSSLVVITHLATLVS--SYTKGFAIIVEPFSDKAPT------------- 351
++ L + L F S+ + H T S SY K F +I +P +
Sbjct: 430 VQFLSL--LGYFGSVETLKHFRTYSSSLSYEKFFTVIQKPQTSMGDDDTLLAHTQQIFEH 487
Query: 352 VPNPVLY-FCCLDSSLAIKPVFDRFQTVVITSGTL 385
+ LY C D +A++PV+ F +++ S TL
Sbjct: 488 SKHQTLYRLVCQDPFIALRPVYQYFPLIMMMSATL 522
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 724 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 783
+CPYF R+ + A I+V SY+Y+LDPK A + L ++++++ DEAHN++ D++S
Sbjct: 219 VCPYFANRRLLHTADIIVGSYNYVLDPKCAGPLGAILDKNTLLIIDEAHNLEYAACDAMS 278
Query: 784 VRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANP 843
+ ++ + + +I + ++ + + L+ R ++ ++ +L +
Sbjct: 279 MHLSYKLVVDCEQSIHAMSASIAHSTRPPPPPFSPDRS-LLRKERAIKTVQQDSRLLFSG 337
Query: 844 VLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLT 888
P ++L ++ + ++F R + + ++E L+D LT
Sbjct: 338 SAPADVLLLSSESYAAVRTPQQFLSGLLR--IVRLLKEQLSDRLT 380
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 15/96 (15%)
Query: 428 IDDLPVFFPYEYIYPEQYAYM----------VELKKALDAKGHCLLEMPSGTGKTTSLLS 477
I L + +PY I +Q M +E ++AL LLE +G+GKT ++LS
Sbjct: 5 IGGLSIVYPYPTISKQQLQIMEHVCDVLRTGIEGRRALS-----LLEAKTGSGKTLAVLS 59
Query: 478 LIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513
++ +A+P ++++++ RT+P ++ V+ E+ L
Sbjct: 60 AAASFWDAYPTAISRIVFLCRTIPVVDHVLGEIFHL 95
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW--YDQGIIDNL 637
L + F R S ++NYG++L I+ DG++ FF SY ++E ++ W + +
Sbjct: 595 LTTQFFFRTTPSAVQNYGRILAQISSSTADGLIVFFPSYRFMEDLITLWNITSSNMFRVI 654
Query: 638 QKRKLLFIETQDALDS 653
KL+F ET D +++
Sbjct: 655 TNNKLVFFETPDPIET 670
>gi|159107698|ref|XP_001704126.1| TFIIH basal transcription factor complex helicase subunit [Giardia
lamblia ATCC 50803]
gi|157432178|gb|EDO76452.1| TFIIH basal transcription factor complex helicase subunit [Giardia
lamblia ATCC 50803]
Length = 840
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 88/368 (23%), Positives = 157/368 (42%), Gaps = 66/368 (17%)
Query: 43 AVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVS 102
++GRE+ P + + G +CPYF R+ + A I+V SY+Y+LDPK A +
Sbjct: 196 SIGRESYTIPEFINQCRTYNGGV---VCPYFANRRLLHTADIIVGSYNYVLDPKCAGPLG 252
Query: 103 KELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEA------ 156
L ++++++ DEAHN++ D++S+ ++ + + +I + ++
Sbjct: 253 AILDQNTLLIIDEAHNLEYAACDAMSMHLSYKLVVDCEQSIHAMSASIAHSARPPPPPFS 312
Query: 157 -DSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEI--LQEVVPGNIRTAEHFVGFL 213
D + LR+E R ++ ++ +L + P ++ L ++T + F+ L
Sbjct: 313 PDRSFLRKE--------RAIKTVQQDSRLLFSGSAPADVLLLSSESYAAVKTPQQFLSGL 364
Query: 214 KRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQV 273
R + LK +L + KD+ S P +++ R F TE L
Sbjct: 365 LRIVRLLKEQLSDR---------LTKDVVSLPHVDVLN-LVRLQFITESFL--------- 405
Query: 274 VQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVS- 332
Q SP +L S CI K L L++ L + L F S+ + H T S
Sbjct: 406 -QLSPE-YLHYYQSYYCIFDK-------NLPQLVQFLSL--LGYFGSVETLKHFRTYSSS 454
Query: 333 -SYTKGFAIIVEPFSDKA-------------PTVPNPVLY-FCCLDSSLAIKPVFDRFQT 377
SY K F +I +P + + LY C D +A++PV+ F
Sbjct: 455 LSYEKFFTVIQKPQTSMGDDDTLLAHTQQIFEHSKHQTLYRLVCQDPFIALRPVYQYFPL 514
Query: 378 VVITSGTL 385
+++ S TL
Sbjct: 515 IMMMSATL 522
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Query: 698 AVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVS 757
++GRE+ P + + G +CPYF R+ + A I+V SY+Y+LDPK A +
Sbjct: 196 SIGRESYTIPEFINQCRTYNGGV---VCPYFANRRLLHTADIIVGSYNYVLDPKCAGPLG 252
Query: 758 KELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 805
L ++++++ DEAHN++ D++S+ ++ + + +I + ++
Sbjct: 253 AILDQNTLLIIDEAHNLEYAACDAMSMHLSYKLVVDCEQSIHAMSASI 300
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW--YDQGIIDNL 637
L + F R S ++NYG++L I+ DG++ FF SY ++E ++ W + +
Sbjct: 595 LTTQFFFRTTPSAVQNYGRILAQISSSTADGLIVFFPSYRFMEDLITLWNITSSNMFRVI 654
Query: 638 QKRKLLFIETQDALDS 653
KL+F ET D +++
Sbjct: 655 TNNKLVFFETPDPIET 670
Score = 47.4 bits (111), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVE----LKKALDAK-GHCLLEMPSGTGKTTSLLSL 478
M + + L + +PY + +Q M L+ + K LLE +G+GKT ++LS
Sbjct: 1 MLIDVGGLSIVYPYPTVSKQQLQIMEHVCDVLRTGIGGKRALSLLEAKTGSGKTLAVLSA 60
Query: 479 IVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513
++ +A+P ++++++ RT+P ++ V+ E+ L
Sbjct: 61 AASFWDAYPTAISRIVFLCRTIPVVDHVLGEIFHL 95
>gi|298706777|emb|CBJ29700.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1061
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 52 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 111
P V+ + + MG+E CPY+ AR ++++A +V+ Y+YL+DP + ++ L +++VV
Sbjct: 319 PPVWDVEEAVRMGQENQACPYYTARASLVNADLVLCPYNYLVDPGVREIMGINL-KNAVV 377
Query: 112 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 146
+FDEAHN+++ ++ S +++ R + A G + L
Sbjct: 378 IFDEAHNLEDSAREAASAKLSLRALANAAGEMHRL 412
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 707 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 766
P V+ + + MG+E CPY+ AR ++++A +V+ Y+YL+DP + ++ L +++VV
Sbjct: 319 PPVWDVEEAVRMGQENQACPYYTARASLVNADLVLCPYNYLVDPGVREIMGINL-KNAVV 377
Query: 767 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 801
+FDEAHN+++ ++ S +++ R + A G + L
Sbjct: 378 IFDEAHNLEDSAREAASAKLSLRALANAAGEMHRL 412
>gi|194888991|ref|XP_001977003.1| GG18780 [Drosophila erecta]
gi|229891622|sp|B3NSW1.1|RTEL1_DROER RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|190648652|gb|EDV45930.1| GG18780 [Drosophila erecta]
Length = 985
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 51 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 110
P + I L ++G+ L +CPYF +R+ + A I Y+YLLDPK EL +++
Sbjct: 190 GPSIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELG-NTI 248
Query: 111 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
V+ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 249 VILDEAHNIEKICEESASVQIKSSDVAMAIEDV 281
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 706 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 765
P + I L ++G+ L +CPYF +R+ + A I Y+YLLDPK EL +++
Sbjct: 190 GPSIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELG-NTI 248
Query: 766 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
V+ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 249 VILDEAHNIEKICEESASVQIKSSDVAMAIEDV 281
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 66/155 (42%), Gaps = 48/155 (30%)
Query: 427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM--- 483
+I +PV FP+E YP Q AYM ++ + L + +LE P+GTGKT SLL +A++
Sbjct: 5 LIAGIPVHFPFE-PYPVQRAYMEKVIQCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTR 63
Query: 484 ------------------------------------NAHPLDVTKLLYCSRTVPEIEKVV 507
A+ V K++Y SRT ++ + +
Sbjct: 64 QSEHQQQMVKIEKADFSGLAGGATGGELSDLGKTMGRANNWGVPKVIYASRTHSQLTQAM 123
Query: 508 EELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
EL R NM +VL SR LCIH E
Sbjct: 124 RELKR--------TAYANMRSVVLGSRDQLCIHPE 150
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S + RD+ I + GQ +++++ +VPDG++ FF SY L V +W G+ ++
Sbjct: 526 LISNYANRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNKCVDAWQASGLWADISC 585
Query: 640 RKLLFIE 646
+K +F+E
Sbjct: 586 KKPIFLE 592
>gi|353232615|emb|CCD79969.1| putative regulator of telomere elongation helicase 1 rtel1
[Schistosoma mansoni]
Length = 1165
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 77/135 (57%), Gaps = 7/135 (5%)
Query: 34 VCDFYEKFDAVGREAPL----APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 89
C+++ FD+ R+ L + G+ I L G+++ CPYF++R+ + ++ Y
Sbjct: 175 TCEYFRNFDS-KRDEILTNLKSEGIVDIEDLSNYGQKIKCCPYFISRELKTDSSLIFMPY 233
Query: 90 HYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL-EG 148
+Y+LDP+I ++ + L ++ V+FDEAHNI+ VC D+ SV ++ + A+ +++ + E
Sbjct: 234 NYVLDPRIRSLYNINL-ENTTVIFDEAHNIEQVCEDASSVTLSSALLASAIEHVKCVCEV 292
Query: 149 TLKEMKEADSAKLRE 163
L KE +L +
Sbjct: 293 VLDHTKEQQEIELSD 307
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 77/135 (57%), Gaps = 7/135 (5%)
Query: 689 VCDFYEKFDAVGREAPL----APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 744
C+++ FD+ R+ L + G+ I L G+++ CPYF++R+ + ++ Y
Sbjct: 175 TCEYFRNFDS-KRDEILTNLKSEGIVDIEDLSNYGQKIKCCPYFISRELKTDSSLIFMPY 233
Query: 745 HYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL-EG 803
+Y+LDP+I ++ + L ++ V+FDEAHNI+ VC D+ SV ++ + A+ +++ + E
Sbjct: 234 NYVLDPRIRSLYNINL-ENTTVIFDEAHNIEQVCEDASSVTLSSALLASAIEHVKCVCEV 292
Query: 804 TLKEMKEADSAKLRE 818
L KE +L +
Sbjct: 293 VLDHTKEQQEIELSD 307
Score = 46.6 bits (109), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 554 NYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVC 613
N QL + I PDG L + + R+ + + G LL+ +A VVP G++
Sbjct: 538 NPDQLNLSIIPRGPDGE--------KLNATYSVRETSAYRNSLGLLLIQLADVVPAGLLI 589
Query: 614 FFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
FF SY ++ + W D + + L + K +FIE ++
Sbjct: 590 FFPSYSFMSQCIEYWKDGDVYEKLSRSKHIFIEPRE 625
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN 484
+ ID + + FPY+ Y Q+ YM ++ +L+ H +LE P+GTGKT LL +A+++
Sbjct: 4 IAIDGVEIDFPYQ-PYDCQFEYMTKVLLSLNEGKHAILESPTGTGKTLCLLCASLAWLD 61
>gi|449019202|dbj|BAM82604.1| probable DNA helicase required for mitotic chromosome segregation
CHL1 [Cyanidioschyzon merolae strain 10D]
Length = 1020
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 104/487 (21%), Positives = 195/487 (40%), Gaps = 93/487 (19%)
Query: 5 RDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMG 64
R V+ RCH L ++ V+ A E C FY+K + V + L +G
Sbjct: 389 RSAAAVNERCHELRNNQVKT--AAAEQQSQCPFYQKERIRNLANVMHQQVCDLEDLLALG 446
Query: 65 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 124
++ CPY+ AR ++ A+++V Y LL + + + ++V+ DEAHN+ V
Sbjct: 447 QQHQACPYYAARASLACAELIVMPYQTLLHETTRQSANVPVDQRTIVILDEAHNL----V 502
Query: 125 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKE--------ADSAKLREEYARLVEGLRDAQ 176
D+L+ T + ++ + +E T+ E E D + E+ RL+ LR
Sbjct: 503 DALN---EMHTTKLSIAEVTAMEATVSEFIEKQKTWKPDPDRSFHLEQLRRLLAALRQGM 559
Query: 177 -----SARETDVVLANPV--LPDE---ILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRV 226
S R +D P+ DE +++ +P R + V L F
Sbjct: 560 QPEDLSRRPSDPTRTRPLDKASDEHSPVVRSEIPEPGRDLQDDV-ILSEFC--------- 609
Query: 227 QQVVQESPATFLKDISSKPAPSMISEAYRYIFSTE-EHL-----KTRLRVQQVVQESPAT 280
++P+ F + K S+ RY+FST+ H+ ++R R ++ ++ S +
Sbjct: 610 -----QTPSDFCFQM--KIEQMNFSQLIRYLFSTKCMHMLQSLHESRRRTERSIESSAHS 662
Query: 281 FLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAI 340
L +++S V P TL T + +S + A
Sbjct: 663 VLSEVAS-VHSNESP-------------TLYGTGFYELASFL----------------AA 692
Query: 341 IVEPFS-DKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLD-MYPKILNFQ 398
+ EP + K T PN + + LD P++ + ++ GTL P + + P++ + +
Sbjct: 693 LCEPRACGKVLTAPNRHIRYVLLDPIPYFSPIYRTARATILAGGTLEPREALLPRLFDEE 752
Query: 399 PVIMHSFSMTLARPCLLPMVRENYAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAK 458
FS +V + + L++ P P E+ + ++ + +D
Sbjct: 753 TCKQVYFS------AFQHVVPQENVLALILGKGPTGLPLEFSFSQR-----QCMAQIDEL 801
Query: 459 GHCLLEM 465
GHC++ +
Sbjct: 802 GHCIVNL 808
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 22/198 (11%)
Query: 660 RDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMG 719
R V+ RCH L ++ V+ A E C FY+K + V + L +G
Sbjct: 389 RSAAAVNERCHELRNNQVKT--AAAEQQSQCPFYQKERIRNLANVMHQQVCDLEDLLALG 446
Query: 720 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 779
++ CPY+ AR ++ A+++V Y LL + + + ++V+ DEAHN+ V
Sbjct: 447 QQHQACPYYAARASLACAELIVMPYQTLLHETTRQSANVPVDQRTIVILDEAHNL----V 502
Query: 780 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKE--------ADSAKLREEYARLVEGLRDAQ 831
D+L+ T + ++ + +E T+ E E D + E+ RL+ LR
Sbjct: 503 DALN---EMHTTKLSIAEVTAMEATVSEFIEKQKTWKPDPDRSFHLEQLRRLLAALRQGM 559
Query: 832 -----SARETDVVLANPV 844
S R +D P+
Sbjct: 560 QPEDLSRRPSDPTRTRPL 577
>gi|384253151|gb|EIE26626.1| DNA repair helicase [Coccomyxa subellipsoidea C-169]
Length = 812
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 34 VCDFYEKFDAVGREAPLAPG-VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYL 92
C +Y K ++ R P A G I +L +G G CP++L+R A+IV Y+YL
Sbjct: 156 TCSWYNKVESWTRMHPDANGEALDIEELVRLGSSGGPCPFYLSRDMASTAQIVFMPYNYL 215
Query: 93 LDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 144
+D KI + ++V+VFDEAHN++ VC D+ S + + A+ ++Q
Sbjct: 216 VDAKIRGGIKMLSWDNAVLVFDEAHNVEGVCSDAASFDLTGALLGTALQDVQ 267
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 689 VCDFYEKFDAVGREAPLAPG-VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYL 747
C +Y K ++ R P A G I +L +G G CP++L+R A+IV Y+YL
Sbjct: 156 TCSWYNKVESWTRMHPDANGEALDIEELVRLGSSGGPCPFYLSRDMASTAQIVFMPYNYL 215
Query: 748 LDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 799
+D KI + ++V+VFDEAHN++ VC D+ S + + A+ ++Q
Sbjct: 216 VDAKIRGGIKMLSWDNAVLVFDEAHNVEGVCSDAASFDLTGALLGTALQDVQ 267
Score = 40.8 bits (94), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW 628
L S + TR + + + G L + A +VPDG++ FF SY LE+ + W
Sbjct: 480 LNSSYATRTSPAYMEDLGLALANWARIVPDGLLVFFASYTVLEACLRHW 528
Score = 39.7 bits (91), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 426 LMIDDLPV--FFPYEYIYPEQ-YAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
L ID+L + F+ + ++ Q YA K+ A G C E+P+ + VA
Sbjct: 364 LQIDELFLLTFYCSKSVFASQGYAICCLFWKSKWAHG-CGQEVPT---LSYWCFEPGVAM 419
Query: 483 MNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMT----GLVLSSRKNLC 538
L V +L S T+ ++ +EL+ F +++ +N + G+V K +
Sbjct: 420 AALCALKVRCILLTSGTLAPLDSFAQELSLDFPVTLENPHVVNTSQVWVGVVPVGPKGVV 479
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVF 584
++S + TR + + + G L + A +VPDG++ FF SY LE+
Sbjct: 480 LNSSYATRTSPAYMEDLGLALANWARIVPDGLLVFFASYTVLEACL 525
>gi|401825484|ref|XP_003886837.1| RAD3-like DNA-binding helicase [Encephalitozoon hellem ATCC 50504]
gi|392997993|gb|AFM97856.1| RAD3-like DNA-binding helicase [Encephalitozoon hellem ATCC 50504]
Length = 678
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 75/133 (56%), Gaps = 10/133 (7%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
++ I +LK GR G CPY+ +R A+++ Y+YL+DP+I L +SVV+
Sbjct: 169 IFDIEELKGEGRRCGGCPYYASRILNEDAEVIFAPYNYLIDPRIRGNTGISL-ENSVVIV 227
Query: 114 DEAHNIDNVCVDSLSVRINRRTIE----KAVGNIQTLEGTLKEMKEADSAKLREEYARLV 169
DEAHNI++VC S S+ + RTIE + +G ++ G L E+K D L + + +L
Sbjct: 228 DEAHNIEDVCRSSGSIELGSRTIEIIQNEILGAVKR-SGILGEVK-LDFINLMDFFKKLR 285
Query: 170 EGLRDAQSARETD 182
EG A+S E D
Sbjct: 286 EG---AESTDEFD 295
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 75/133 (56%), Gaps = 10/133 (7%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
++ I +LK GR G CPY+ +R A+++ Y+YL+DP+I L +SVV+
Sbjct: 169 IFDIEELKGEGRRCGGCPYYASRILNEDAEVIFAPYNYLIDPRIRGNTGISL-ENSVVIV 227
Query: 769 DEAHNIDNVCVDSLSVRINRRTIE----KAVGNIQTLEGTLKEMKEADSAKLREEYARLV 824
DEAHNI++VC S S+ + RTIE + +G ++ G L E+K D L + + +L
Sbjct: 228 DEAHNIEDVCRSSGSIELGSRTIEIIQNEILGAVKR-SGILGEVK-LDFINLMDFFKKLR 285
Query: 825 EGLRDAQSARETD 837
EG A+S E D
Sbjct: 286 EG---AESTDEFD 295
>gi|295123971|gb|ADF79587.1| CG4078 [Drosophila melanogaster]
Length = 235
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 51 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 110
P + I L ++G+ L +CPYF +R+ + A I Y+YLLDPK EL +++
Sbjct: 120 GPTIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELG-NTI 178
Query: 111 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
V+ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 179 VILDEAHNIEKICEESASVQIKSSDVAMAIEDV 211
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 706 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 765
P + I L ++G+ L +CPYF +R+ + A I Y+YLLDPK EL +++
Sbjct: 120 GPTIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELG-NTI 178
Query: 766 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
V+ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 179 VILDEAHNIEKICEESASVQIKSSDVAMAIEDV 211
>gi|159152216|gb|ABW92616.1| CG4078-PA [Drosophila melanogaster]
Length = 234
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 51 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 110
P + I L ++G+ L +CPYF +R+ + A I Y+YLLDPK EL +++
Sbjct: 120 GPTIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELG-NTI 178
Query: 111 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
V+ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 179 VILDEAHNIEKICEESASVQIKSSDVAMAIEDV 211
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 706 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 765
P + I L ++G+ L +CPYF +R+ + A I Y+YLLDPK EL +++
Sbjct: 120 GPTIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELG-NTI 178
Query: 766 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
V+ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 179 VILDEAHNIEKICEESASVQIKSSDVAMAIEDV 211
>gi|159152200|gb|ABW92608.1| CG4078-PA [Drosophila melanogaster]
gi|159152202|gb|ABW92609.1| CG4078-PA [Drosophila melanogaster]
gi|159152204|gb|ABW92610.1| CG4078-PA [Drosophila melanogaster]
gi|159152206|gb|ABW92611.1| CG4078-PA [Drosophila melanogaster]
gi|159152208|gb|ABW92612.1| CG4078-PA [Drosophila melanogaster]
gi|159152210|gb|ABW92613.1| CG4078-PA [Drosophila melanogaster]
gi|159152212|gb|ABW92614.1| CG4078-PA [Drosophila melanogaster]
gi|159152214|gb|ABW92615.1| CG4078-PA [Drosophila melanogaster]
gi|159152218|gb|ABW92617.1| CG4078-PA [Drosophila melanogaster]
gi|159152220|gb|ABW92618.1| CG4078-PA [Drosophila melanogaster]
gi|295123967|gb|ADF79585.1| CG4078 [Drosophila melanogaster]
gi|295123969|gb|ADF79586.1| CG4078 [Drosophila melanogaster]
gi|295123973|gb|ADF79588.1| CG4078 [Drosophila melanogaster]
gi|295123975|gb|ADF79589.1| CG4078 [Drosophila melanogaster]
gi|295123977|gb|ADF79590.1| CG4078 [Drosophila melanogaster]
gi|295123979|gb|ADF79591.1| CG4078 [Drosophila melanogaster]
gi|295123981|gb|ADF79592.1| CG4078 [Drosophila melanogaster]
gi|295123983|gb|ADF79593.1| CG4078 [Drosophila melanogaster]
gi|295123985|gb|ADF79594.1| CG4078 [Drosophila melanogaster]
gi|295123987|gb|ADF79595.1| CG4078 [Drosophila melanogaster]
Length = 235
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 51 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 110
P + I L ++G+ L +CPYF +R+ + A I Y+YLLDPK EL +++
Sbjct: 120 GPTIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELG-NTI 178
Query: 111 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
V+ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 179 VILDEAHNIEKICEESASVQIKSSDVAMAIEDV 211
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 706 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 765
P + I L ++G+ L +CPYF +R+ + A I Y+YLLDPK EL +++
Sbjct: 120 GPTIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELG-NTI 178
Query: 766 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
V+ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 179 VILDEAHNIEKICEESASVQIKSSDVAMAIEDV 211
>gi|440797062|gb|ELR18157.1| DNA repair helicase (rad3) subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 1026
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 26/131 (19%)
Query: 11 DGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPL------------APG-VYSI 57
D +C SL +S CD+Y + D + + L A G + I
Sbjct: 182 DHKCRSLVTSRR------------CDYYNRLDDLKKSEQLRGSCNGMFGEEVAEGEITDI 229
Query: 58 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAH 117
+L + GR+ GLC ++LAR+ A I+ Y+YL+DP I + +L R +V++FDEAH
Sbjct: 230 EELLQSGRDRGLCAFYLARELQYSADIIFAPYNYLIDPAIRRSLGVDL-RGAVIIFDEAH 288
Query: 118 NIDNVCVDSLS 128
N+++VC DS S
Sbjct: 289 NVESVCEDSAS 299
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 26/131 (19%)
Query: 666 DGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPL------------APG-VYSI 712
D +C SL +S CD+Y + D + + L A G + I
Sbjct: 182 DHKCRSLVTSRR------------CDYYNRLDDLKKSEQLRGSCNGMFGEEVAEGEITDI 229
Query: 713 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAH 772
+L + GR+ GLC ++LAR+ A I+ Y+YL+DP I + +L R +V++FDEAH
Sbjct: 230 EELLQSGRDRGLCAFYLARELQYSADIIFAPYNYLIDPAIRRSLGVDL-RGAVIIFDEAH 288
Query: 773 NIDNVCVDSLS 783
N+++VC DS S
Sbjct: 289 NVESVCEDSAS 299
>gi|295123965|gb|ADF79584.1| CG4078 [Drosophila melanogaster]
Length = 234
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 51 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 110
P + I L ++G+ L +CPYF +R+ + A I Y+YLLDPK EL +++
Sbjct: 120 GPTIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELG-NTI 178
Query: 111 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
V+ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 179 VILDEAHNIEKICEESASVQIKSSDVAMAIEDV 211
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 706 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 765
P + I L ++G+ L +CPYF +R+ + A I Y+YLLDPK EL +++
Sbjct: 120 GPTIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELG-NTI 178
Query: 766 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
V+ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 179 VILDEAHNIEKICEESASVQIKSSDVAMAIEDV 211
>gi|159152196|gb|ABW92606.1| CG4078-PA [Drosophila simulans]
Length = 235
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 51 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 110
P + I L ++G+ L +CPYF +R+ + A I Y+YLLDPK EL +++
Sbjct: 120 GPTIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELG-NTI 178
Query: 111 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
V+ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 179 VILDEAHNIEKICEESASVQIKSSDVAMAIEDV 211
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 706 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 765
P + I L ++G+ L +CPYF +R+ + A I Y+YLLDPK EL +++
Sbjct: 120 GPTIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELG-NTI 178
Query: 766 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
V+ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 179 VILDEAHNIEKICEESASVQIKSSDVAMAIEDV 211
>gi|302129716|ref|NP_001013328.2| regulator of telomere elongation helicase 1 [Danio rerio]
Length = 1177
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 8/130 (6%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY D + + + + L + G++ +CPY+L+R HA ++ Y+YLLD
Sbjct: 172 CIFYNNVDEKSTDKEIVNSILDVEDLVKTGKKQRVCPYYLSRSLKQHADVIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE-- 152
PK + EL + +VV+FDEAHN++ +C +S S + T + I+ ++ L+E
Sbjct: 232 PKSRRAHNIEL-KGAVVIFDEAHNVEKMCEESTSFDL---TPHDLISAIEAVDRLLREQA 287
Query: 153 --MKEADSAK 160
+ +ADSA+
Sbjct: 288 SDISKADSAE 297
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 8/130 (6%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY D + + + + L + G++ +CPY+L+R HA ++ Y+YLLD
Sbjct: 172 CIFYNNVDEKSTDKEIVNSILDVEDLVKTGKKQRVCPYYLSRSLKQHADVIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE-- 807
PK + EL + +VV+FDEAHN++ +C +S S + T + I+ ++ L+E
Sbjct: 232 PKSRRAHNIEL-KGAVVIFDEAHNVEKMCEESTSFDL---TPHDLISAIEAVDRLLREQA 287
Query: 808 --MKEADSAK 815
+ +ADSA+
Sbjct: 288 SDISKADSAE 297
Score = 48.1 bits (113), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V I PDGV L + F+ R + + G LV+++ VVP G++ FF
Sbjct: 509 QIFVSIIEKGPDGV--------QLSTAFDRRFVPENMSSMGNTLVNLSRVVPHGLLVFFP 560
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSS 676
SY ++ + W +G D ++ K +F+E + V GK+ D + +
Sbjct: 561 SYPVMDKTLEFWRAKGHADRIENVKPMFVEPRGKGTFTEVIDGYYGKVDDPNSSGGSFFA 620
Query: 677 VRDRHKAGENIPVCDFYEK 695
V R KA E + D Y +
Sbjct: 621 VC-RGKASEGLDFADTYGR 638
>gi|162462746|ref|NP_001104820.1| FancJ-like protein [Bombyx mori]
gi|161339205|dbj|BAF94023.1| FancJ-like protein [Bombyx mori]
Length = 851
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY+ ++ P + I L E G +L CPYF A+ AKI+ Y+YL++
Sbjct: 302 CKFYDNRMSLTHSN--LPPAFDIEDLVEAGAKLKACPYFAAKSMAARAKIIFCPYNYLIN 359
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 144
P I + LA ++VV DE HNI+++C D + I RR I +AV +Q
Sbjct: 360 PFIRERMRINLA-DNIVVIDEGHNIEDICRDEATCTIERRRISEAVDQLQ 408
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY+ ++ P + I L E G +L CPYF A+ AKI+ Y+YL++
Sbjct: 302 CKFYDNRMSLTHSN--LPPAFDIEDLVEAGAKLKACPYFAAKSMAARAKIIFCPYNYLIN 359
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 799
P I + LA ++VV DE HNI+++C D + I RR I +AV +Q
Sbjct: 360 PFIRERMRINLA-DNIVVIDEGHNIEDICRDEATCTIERRRISEAVDQLQ 408
Score = 44.3 bits (103), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 597 GQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSV 656
G+ ++ + V P GV+CF +SY + + W G+ D L K +F E+ + D +
Sbjct: 640 GKAILRVCDVTPHGVLCFHSSYTSMRLLHQRWQQTGLWDKLNSLKYIFKESDNTTDHDEI 699
Query: 657 SKE 659
KE
Sbjct: 700 MKE 702
>gi|24639946|ref|NP_572254.1| CG4078, isoform A [Drosophila melanogaster]
gi|442615242|ref|NP_001259262.1| CG4078, isoform B [Drosophila melanogaster]
gi|75027961|sp|Q9W484.1|RTEL1_DROME RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|7290625|gb|AAF46074.1| CG4078, isoform A [Drosophila melanogaster]
gi|60677863|gb|AAX33438.1| RE31401p [Drosophila melanogaster]
gi|220952186|gb|ACL88636.1| CG4078-PA [synthetic construct]
gi|440216460|gb|AGB95108.1| CG4078, isoform B [Drosophila melanogaster]
Length = 985
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 51 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 110
P + I L ++G+ L +CPYF +R+ + A I Y+YLLDPK EL +++
Sbjct: 190 GPTIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELG-NTI 248
Query: 111 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
V+ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 249 VILDEAHNIEKICEESASVQIKSSDVAMAIEDV 281
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 706 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 765
P + I L ++G+ L +CPYF +R+ + A I Y+YLLDPK EL +++
Sbjct: 190 GPTIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELG-NTI 248
Query: 766 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
V+ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 249 VILDEAHNIEKICEESASVQIKSSDVAMAIEDV 281
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 65/155 (41%), Gaps = 48/155 (30%)
Query: 427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM--- 483
+I +PV FP+E YP Q AYM ++ L + +LE P+GTGKT SLL +A++
Sbjct: 5 LIAGIPVHFPFE-PYPVQRAYMEKVIHCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTR 63
Query: 484 ------------------------------------NAHPLDVTKLLYCSRTVPEIEKVV 507
A+ V K++Y SRT ++ + +
Sbjct: 64 QSEHQKQMVKMEKADFSGLGGGAPGGDLSELAKTMGRANNWGVPKVIYASRTHSQLTQAM 123
Query: 508 EELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
EL R NM +VL SR LCIH E
Sbjct: 124 RELKR--------TAYANMRSVVLGSRDQLCIHPE 150
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S + RD+ I + GQ ++++A +VPDG++ FF SY L V +W G+ ++
Sbjct: 526 LISNYANRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKCVDAWQASGLWADISC 585
Query: 640 RKLLFIE 646
+K +F+E
Sbjct: 586 KKPIFLE 592
>gi|229891620|sp|P0C928.1|RTEL1_DANRE RecName: Full=Regulator of telomere elongation helicase 1
Length = 1177
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 8/130 (6%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY D + + + + L + G++ +CPY+L+R HA ++ Y+YLLD
Sbjct: 172 CIFYNNVDEKSTDKEIVNSILDVEDLVKTGKKQRVCPYYLSRSLKQHADVIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE-- 152
PK + EL + +VV+FDEAHN++ +C +S S + T + I+ ++ L+E
Sbjct: 232 PKSRRAHNIEL-KGAVVIFDEAHNVEKMCEESTSFDL---TPHDLISAIEAVDRLLREQA 287
Query: 153 --MKEADSAK 160
+ +ADSA+
Sbjct: 288 SDISKADSAE 297
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 8/130 (6%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY D + + + + L + G++ +CPY+L+R HA ++ Y+YLLD
Sbjct: 172 CIFYNNVDEKSTDKEIVNSILDVEDLVKTGKKQRVCPYYLSRSLKQHADVIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE-- 807
PK + EL + +VV+FDEAHN++ +C +S S + T + I+ ++ L+E
Sbjct: 232 PKSRRAHNIEL-KGAVVIFDEAHNVEKMCEESTSFDL---TPHDLISAIEAVDRLLREQA 287
Query: 808 --MKEADSAK 815
+ +ADSA+
Sbjct: 288 SDISKADSAE 297
Score = 48.1 bits (113), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V I PDGV L + F+ R + + G LV+++ VVP G++ FF
Sbjct: 509 QIFVSIIEKGPDGV--------QLSTAFDRRFVPENMSSMGNTLVNLSRVVPHGLLVFFP 560
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSS 676
SY ++ + W +G D ++ K +F+E + V GK+ D + +
Sbjct: 561 SYPVMDKTLEFWRAKGHADRIENVKPMFVEPRGKGTFTEVIDGYYGKVDDPNSSGGSFFA 620
Query: 677 VRDRHKAGENIPVCDFYEK 695
V R KA E + D Y +
Sbjct: 621 V-CRGKASEGLDFADTYGR 638
>gi|159152198|gb|ABW92607.1| CG4078-PA [Drosophila melanogaster]
Length = 234
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 51 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 110
P + I L ++G+ L +CPYF +R+ + A I Y+YLLDPK EL +++
Sbjct: 120 GPTIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELG-NTI 178
Query: 111 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
V+ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 179 VILDEAHNIEKICEESASVQIKSSDVAMAIEDV 211
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 706 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 765
P + I L ++G+ L +CPYF +R+ + A I Y+YLLDPK EL +++
Sbjct: 120 GPTIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELG-NTI 178
Query: 766 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
V+ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 179 VILDEAHNIEKICEESASVQIKSSDVAMAIEDV 211
>gi|443694244|gb|ELT95437.1| hypothetical protein CAPTEDRAFT_179377 [Capitella teleta]
Length = 837
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 34 VCDFYEKFD---AVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 90
C FY D + + + I L G+++ CPY++AR+ A I+ Y+
Sbjct: 173 TCHFYNNMDTEFSADAKHNFTNQLMDIEDLVVQGKKMNCCPYYVARELKNDADIIFLPYN 232
Query: 91 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 150
YLLDPK EL + ++V+FDEAHN++ +C DS S I A+ + ++ G L
Sbjct: 233 YLLDPKSRKAHGVEL-QGNIVIFDEAHNLEKMCEDSASFDFTSTDIASAMREVDSVAGRL 291
Query: 151 KEM 153
+E+
Sbjct: 292 QEL 294
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 689 VCDFYEKFD---AVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 745
C FY D + + + I L G+++ CPY++AR+ A I+ Y+
Sbjct: 173 TCHFYNNMDTEFSADAKHNFTNQLMDIEDLVVQGKKMNCCPYYVARELKNDADIIFLPYN 232
Query: 746 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 805
YLLDPK EL + ++V+FDEAHN++ +C DS S I A+ + ++ G L
Sbjct: 233 YLLDPKSRKAHGVEL-QGNIVIFDEAHNLEKMCEDSASFDFTSTDIASAMREVDSVAGRL 291
Query: 806 KEM 808
+E+
Sbjct: 292 QEL 294
Score = 44.3 bits (103), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S + TR S ++ G +V+ + +VP G++ FF SY ++ V +W + + +
Sbjct: 534 LCSDYNTRFKESYQKSLGNAVVNFSRIVPHGLLLFFPSYPVMDQCVTNWRSGTLWSRMDQ 593
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCD 691
K +++E ++ + + KI D C+ T ++V R K E + D
Sbjct: 594 MKSVYVEPRNKHEFNTTMAAYYDKINDDTCNGATFAAVC-RGKVSEGLDFAD 644
>gi|384246051|gb|EIE19542.1| DNA repair helicase [Coccomyxa subellipsoidea C-169]
Length = 1621
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 52 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 111
P V+ I L ++G+E+ CPYF+AR+ HA+++ Y+YL+DP I + + + + +V+
Sbjct: 168 PQVHDIEDLVQVGKEIKACPYFVARKIAEHAELLFCPYNYLIDPVIRSSMGINI-QHAVI 226
Query: 112 VFDEAHNIDNVCVDSLSVRINRRTI 136
+FDEAHNI+++ D+ SV + R ++
Sbjct: 227 IFDEAHNIEDISRDAASVEMERASM 251
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 707 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 766
P V+ I L ++G+E+ CPYF+AR+ HA+++ Y+YL+DP I + + + + +V+
Sbjct: 168 PQVHDIEDLVQVGKEIKACPYFVARKIAEHAELLFCPYNYLIDPVIRSSMGINI-QHAVI 226
Query: 767 VFDEAHNIDNVCVDSLSVRINRRTI 791
+FDEAHNI+++ D+ SV + R ++
Sbjct: 227 IFDEAHNIEDISRDAASVEMERASM 251
>gi|301094332|ref|XP_002896272.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262109667|gb|EEY67719.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 988
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 63/128 (49%), Gaps = 15/128 (11%)
Query: 5 RDGKIVDGRCH-SLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEM 63
RD VD +C +L SS C F+ K P V+ I L ++
Sbjct: 289 RDPSQVDEKCRLALEGSS-------------CSFFRKRKKTNDLKRSVPPVWDIEDLVKL 335
Query: 64 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 123
++ C YF AR+A+ HA IV Y+YLLDP I V L + +++V DEAHN+++ C
Sbjct: 336 AQKHRECAYFHAREALDHANIVFAPYNYLLDPTIRGAVGITL-KDAIIVLDEAHNVEDTC 394
Query: 124 VDSLSVRI 131
S SV +
Sbjct: 395 RSSASVEV 402
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 63/128 (49%), Gaps = 15/128 (11%)
Query: 660 RDGKIVDGRCH-SLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEM 718
RD VD +C +L SS C F+ K P V+ I L ++
Sbjct: 289 RDPSQVDEKCRLALEGSS-------------CSFFRKRKKTNDLKRSVPPVWDIEDLVKL 335
Query: 719 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 778
++ C YF AR+A+ HA IV Y+YLLDP I V L + +++V DEAHN+++ C
Sbjct: 336 AQKHRECAYFHAREALDHANIVFAPYNYLLDPTIRGAVGITL-KDAIIVLDEAHNVEDTC 394
Query: 779 VDSLSVRI 786
S SV +
Sbjct: 395 RSSASVEV 402
>gi|194764312|ref|XP_001964274.1| GF20802 [Drosophila ananassae]
gi|229891621|sp|B3MSG8.1|RTEL1_DROAN RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|190619199|gb|EDV34723.1| GF20802 [Drosophila ananassae]
Length = 994
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/355 (21%), Positives = 149/355 (41%), Gaps = 75/355 (21%)
Query: 51 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 110
P + I L ++G++L +CPY+ +++ + A I Y+YLLDPK EL +++
Sbjct: 190 GPSIMDIEDLIKVGQKLKMCPYYASKELVPQADITFMPYNYLLDPKARKANKIELG-NTI 248
Query: 111 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLR------EE 164
V+ DEAHNI+ +C +S SV+I + A+ ++ + D A ++
Sbjct: 249 VILDEAHNIEKICEESASVQIKSSDVAIAIEDVTHIMKAFASDSPQDMAGDEPKDFTIDD 308
Query: 165 YARLVEGLRDAQSARETDVVLANPV----LPDEILQEVVP------GNIRTAEHFVGFLK 214
L E L D + A + V + NP+ P ++ E++ GN+ T V L
Sbjct: 309 LMLLKEMLLDLEKAIDA-VAVDNPIDGATYPASMIYELLGKANFTYGNVAT---IVALLD 364
Query: 215 RFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVV 274
+ ++YL + QQ+ +F +++S+ +F+ +E + ++
Sbjct: 365 KLVQYLMVASQ-QQMSLRKGGSF----------TLLSDLLTIVFANKESVMGKVH----- 408
Query: 275 QESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSY 334
A+F + + + + + A++ L +TN
Sbjct: 409 ----ASFKVHVQVEESKQPQGKQAPAKQAGGWLSKASLTN------------------GS 446
Query: 335 TKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFD-RFQTVVITSGTLSPL 388
T A I+ F C + ++ + + + ++V++TSGTL+PL
Sbjct: 447 TGKVAKIIN---------------FWCFNPGFGMEQLLNTQVRSVILTSGTLAPL 486
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 706 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 765
P + I L ++G++L +CPY+ +++ + A I Y+YLLDPK EL +++
Sbjct: 190 GPSIMDIEDLIKVGQKLKMCPYYASKELVPQADITFMPYNYLLDPKARKANKIELG-NTI 248
Query: 766 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
V+ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 249 VILDEAHNIEKICEESASVQIKSSDVAIAIEDV 281
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 66/155 (42%), Gaps = 48/155 (30%)
Query: 427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM--- 483
+I +PV FP+E YP Q AYM ++ + L + +LE P+GTGKT SLL +A++
Sbjct: 5 LIAGIPVHFPFE-PYPVQRAYMEKVIQCLKDGTNGVLESPTGTGKTLSLLCSSLAWIRTR 63
Query: 484 ------------------------------------NAHPLDVTKLLYCSRTVPEIEKVV 507
A+ V K++Y SRT ++ + +
Sbjct: 64 QSEHQQQMIKLDKGADLLGGGAGGGPELSDLAKTMGKANNWGVPKVIYASRTHSQLTQAM 123
Query: 508 EELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
EL R NM +VL SR LCIH E
Sbjct: 124 RELKR--------TAYSNMRSVVLGSRDQLCIHPE 150
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S + RD+ I + GQ +++++ +VPDG++ FF SY L V +W G+ ++
Sbjct: 526 LISNYTNRDNPKYISSLGQTILNVSRLVPDGLLVFFPSYPMLNKCVDAWQASGLWADIAS 585
Query: 640 RKLLFIE 646
+K +F+E
Sbjct: 586 KKPIFLE 592
>gi|145525952|ref|XP_001448787.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416353|emb|CAK81390.1| unnamed protein product [Paramecium tetraurelia]
Length = 901
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 18/126 (14%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
LMID+ PV+FP++ Y Q AYM + +AL+ K + LLE P+GTGKT SLL +A++
Sbjct: 50 LMIDNTPVYFPHQ-PYEVQKAYMESVIQALNMKQNALLESPTGTGKTLSLLCASLAWLKK 108
Query: 486 HPLDVT--------KLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNL 537
+ D K++Y SRT ++++V EL + + ++M G SR
Sbjct: 109 NRQDQQSSDQPKNIKIIYSSRTHAQLKQVAMELKKTI-----YKPNVSMLG----SRDQY 159
Query: 538 CIHSEF 543
CI EF
Sbjct: 160 CIRGEF 165
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 16 SLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLA 75
+L + S R KA + C FY+K + + V S+ + ++ G + LCPY+
Sbjct: 171 TLLNQSCRKSVKANQ----CQFYKKEHLIVMAQSYSTLVSSLEEARQFGLKNKLCPYYFE 226
Query: 76 RQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN--- 132
RQ + A +++ Y+YLL+ +VV E +S+++FDEAHN+ + D S I
Sbjct: 227 RQRLDSADLILLPYNYLLEKDFQDVVQIE---NSILIFDEAHNVQSTAEDGSSFFITLNN 283
Query: 133 ----RRTIEKAVGNIQTLEGTLKEMK-EADSAKLREE 164
+ +EK + ++++ ++K + ++AK+ E
Sbjct: 284 IVEAEKDLEKWIDELESVAAFYDQLKTKLNAAKVSSE 320
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 671 SLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLA 730
+L + S R KA + C FY+K + + V S+ + ++ G + LCPY+
Sbjct: 171 TLLNQSCRKSVKANQ----CQFYKKEHLIVMAQSYSTLVSSLEEARQFGLKNKLCPYYFE 226
Query: 731 RQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN--- 787
RQ + A +++ Y+YLL+ +VV E +S+++FDEAHN+ + D S I
Sbjct: 227 RQRLDSADLILLPYNYLLEKDFQDVVQIE---NSILIFDEAHNVQSTAEDGSSFFITLNN 283
Query: 788 ----RRTIEKAVGNIQTLEGTLKEMK-EADSAKLREE 819
+ +EK + ++++ ++K + ++AK+ E
Sbjct: 284 IVEAEKDLEKWIDELESVAAFYDQLKTKLNAAKVSSE 320
>gi|38707228|gb|AAR27232.1| DEAH helicase isoform 6 [Mus spretus]
Length = 1128
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 154 KEADSAKLREEY 165
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 809 KEADSAKLREEY 820
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V I PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 505 IIDKNQLWVGIVPRGPDGV--------QLSSAYDKRFSEECLSSLGKALSNIARVVPHGL 556
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W QG+ ++ K LF+E ++
Sbjct: 557 LVFFPSYPVMEKSLEFWQVQGLARKVEALKPLFVEPRN 594
Score = 46.2 bits (108), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN- 484
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQH 62
Query: 485 --------------------AHPL------------------DVTKLLYCSRTVPEIEKV 506
+ L D+ K++Y SRT + +V
Sbjct: 63 LRDAISSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQPTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 123 IREL---------RNTAYRPKVCVLGSREQLCIHPEVKKQE 154
>gi|38707234|gb|AAR27235.1| DEAH helicase isoform 2 [Mus musculus]
Length = 1203
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 154 KEADSAKLREEY 165
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 809 KEADSAKLREEY 820
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V I PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 505 IIDKNQLWVGIVPRGPDGV--------QLSSAYDKRFSEECLSSLGKALSNIARVVPHGL 556
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W QG+ ++ K LF+E ++
Sbjct: 557 LVFFPSYPVMEKSLEFWQVQGLARKVEALKPLFVEPRN 594
Score = 47.8 bits (112), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN- 484
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQH 62
Query: 485 --------------------AHPL------------------DVTKLLYCSRTVPEIEKV 506
+ L D+ K++Y SRT ++ +V
Sbjct: 63 LRDAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 123 IREL---------RNTAYRPKVCVLGSREQLCIHPEVKKQE 154
>gi|81872267|sp|Q6H1L8.1|RTEL1_MUSSP RecName: Full=Regulator of telomere elongation helicase 1
gi|38707220|gb|AAR27228.1| DEAH helicase isoform 2 [Mus spretus]
Length = 1203
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 154 KEADSAKLREEY 165
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 809 KEADSAKLREEY 820
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V I PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 505 IIDKNQLWVGIVPRGPDGV--------QLSSAYDKRFSEECLSSLGKALSNIARVVPHGL 556
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W QG+ ++ K LF+E ++
Sbjct: 557 LVFFPSYPVMEKSLEFWQVQGLARKVEALKPLFVEPRN 594
Score = 46.2 bits (108), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN- 484
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQH 62
Query: 485 --------------------AHPL------------------DVTKLLYCSRTVPEIEKV 506
+ L D+ K++Y SRT + +V
Sbjct: 63 LRDAISSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQPTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 123 IREL---------RNTAYRPKVCVLGSREQLCIHPEVKKQE 154
>gi|38707240|gb|AAR27238.1| DEAH helicase isoform 6 [Mus musculus]
Length = 1128
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 154 KEADSAKLREEY 165
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 809 KEADSAKLREEY 820
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V I PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 505 IIDKNQLWVGIVPRGPDGV--------QLSSAYDKRFSEECLSSLGKALSNIARVVPHGL 556
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W QG+ ++ K LF+E ++
Sbjct: 557 LVFFPSYPVMEKSLEFWQVQGLARKVEALKPLFVEPRN 594
Score = 47.8 bits (112), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN- 484
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQH 62
Query: 485 --------------------AHPL------------------DVTKLLYCSRTVPEIEKV 506
+ L D+ K++Y SRT ++ +V
Sbjct: 63 LRDAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 123 IREL---------RNTAYRPKVCVLGSREQLCIHPEVKKQE 154
>gi|74203152|dbj|BAE26258.1| unnamed protein product [Mus musculus]
Length = 527
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 154 KEADSAKLREEY 165
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 809 KEADSAKLREEY 820
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 47.4 bits (111), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN- 484
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQH 62
Query: 485 --------------------AHPL------------------DVTKLLYCSRTVPEIEKV 506
+ L D+ K++Y SRT ++ +V
Sbjct: 63 LRDAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 123 IREL---------RNTAYRPKVCVLGSREQLCIHPEVKKQE 154
>gi|195396523|ref|XP_002056881.1| GJ16649 [Drosophila virilis]
gi|229891629|sp|B4M891.1|RTEL1_DROVI RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|194146648|gb|EDW62367.1| GJ16649 [Drosophila virilis]
Length = 1005
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 51 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 110
P + I L ++G+ L +CPYF +++ + A I Y+YLLDPK EL+ +++
Sbjct: 189 GPSIMDIEDLVKVGQRLKMCPYFASKELVNGADITFMPYNYLLDPKARKANKIELS-NTI 247
Query: 111 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
V+ DEAHNI+ +C +S SV+I + A+ +I
Sbjct: 248 VILDEAHNIEKICEESASVQIRSSDVAMAIEDI 280
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 706 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 765
P + I L ++G+ L +CPYF +++ + A I Y+YLLDPK EL+ +++
Sbjct: 189 GPSIMDIEDLVKVGQRLKMCPYFASKELVNGADITFMPYNYLLDPKARKANKIELS-NTI 247
Query: 766 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
V+ DEAHNI+ +C +S SV+I + A+ +I
Sbjct: 248 VILDEAHNIEKICEESASVQIRSSDVAMAIEDI 280
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 64/154 (41%), Gaps = 47/154 (30%)
Query: 427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM--- 483
+I +PV FP+E Y Q AYM ++ L + +LE P+GTGKT SLL +A++
Sbjct: 5 IIAGIPVHFPFE-PYEVQRAYMEKVIMCLRDGTNGVLESPTGTGKTLSLLCASLAWIRTR 63
Query: 484 -----------------------------------NAHPLDVTKLLYCSRTVPEIEKVVE 508
A+ V K++Y SRT ++ + +
Sbjct: 64 QSEQQQYMQKLQLDQQKQATGGAGAGVADLNAVMGKANNWGVPKVIYASRTHSQLSQAMR 123
Query: 509 ELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
EL R NM +VL SR LCIH +
Sbjct: 124 ELKR--------TAYANMKSVVLGSRDQLCIHPD 149
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S ++ RD+ I + GQ +++++ +VPDG++ FF SY L V +W G+ ++
Sbjct: 526 LISNYKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNQCVDAWQASGLWADISC 585
Query: 640 RKLLFIE 646
RK +F+E
Sbjct: 586 RKPIFLE 592
>gi|262263449|ref|NP_001160140.1| regulator of telomere elongation helicase 1 isoform 5 [Mus
musculus]
Length = 1128
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 154 KEADSAKLREEY 165
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 809 KEADSAKLREEY 820
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V I PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 505 IIDKNQLWVGIVPRGPDGV--------QLSSAYDKRFSEECLSSLGKALSNIARVVPHGL 556
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W QG+ ++ K LF+E ++
Sbjct: 557 LVFFPSYPVMEKSLEFWQVQGLARKVEALKPLFVEPRN 594
Score = 47.8 bits (112), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN- 484
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQH 62
Query: 485 --------------------AHPL------------------DVTKLLYCSRTVPEIEKV 506
+ L D+ K++Y SRT ++ +V
Sbjct: 63 LRDAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 123 IREL---------RNTAYRPKVCVLGSREQLCIHPEVKKQE 154
>gi|148675458|gb|EDL07405.1| regulator of telomere elongation helicase 1 [Mus musculus]
Length = 1273
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 154 KEADSAKLREEY 165
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 809 KEADSAKLREEY 820
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V I PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 492 IIDKNQLWVGIVPRGPDGV--------QLSSAYDKRFSEECLSSLGKALSNIARVVPHGL 543
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W QG+ ++ K LF+E ++
Sbjct: 544 LVFFPSYPVMEKSLEFWQVQGLARKVEALKPLFVEPRN 581
Score = 48.1 bits (113), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN- 484
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQH 62
Query: 485 --------------------AHPL------------------DVTKLLYCSRTVPEIEKV 506
+ L D+ K++Y SRT ++ +V
Sbjct: 63 LRDAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 123 IREL---------RNTAYRPKVCVLGSREQLCIHPEVKKQE 154
>gi|38707236|gb|AAR27236.1| DEAH helicase isoform 3 [Mus musculus]
Length = 1164
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 154 KEADSAKLREEY 165
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 809 KEADSAKLREEY 820
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V I PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 505 IIDKNQLWVGIVPRGPDGV--------QLSSAYDKRFSEECLSSLGKALSNIARVVPHGL 556
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W QG+ ++ K LF+E ++
Sbjct: 557 LVFFPSYPVMEKSLEFWQVQGLARKVEALKPLFVEPRN 594
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN- 484
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQH 62
Query: 485 --------------------AHPL------------------DVTKLLYCSRTVPEIEKV 506
+ L D+ K++Y SRT ++ +V
Sbjct: 63 LRDAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 123 IREL---------RNTAYRPKVCVLGSREQLCIHPEVKKQE 154
>gi|262263443|ref|NP_001160137.1| regulator of telomere elongation helicase 1 isoform 2 [Mus
musculus]
gi|229891754|sp|Q0VGM9.2|RTEL1_MOUSE RecName: Full=Regulator of telomere elongation helicase 1
gi|148878220|gb|AAI45659.1| Rtel1 protein [Mus musculus]
gi|219519260|gb|AAI44979.1| Rtel1 protein [Mus musculus]
Length = 1203
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 154 KEADSAKLREEY 165
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 809 KEADSAKLREEY 820
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V I PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 505 IIDKNQLWVGIVPRGPDGV--------QLSSAYDKRFSEECLSSLGKALSNIARVVPHGL 556
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W QG+ ++ K LF+E ++
Sbjct: 557 LVFFPSYPVMEKSLEFWQVQGLARKVEALKPLFVEPRN 594
Score = 47.8 bits (112), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN- 484
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQH 62
Query: 485 --------------------AHPL------------------DVTKLLYCSRTVPEIEKV 506
+ L D+ K++Y SRT ++ +V
Sbjct: 63 LRDAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 123 IREL---------RNTAYRPKVCVLGSREQLCIHPEVKKQE 154
>gi|262263447|ref|NP_001160139.1| regulator of telomere elongation helicase 1 isoform 4 [Mus
musculus]
gi|219521615|gb|AAI44978.1| Rtel1 protein [Mus musculus]
Length = 1164
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 154 KEADSAKLREEY 165
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 809 KEADSAKLREEY 820
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V I PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 505 IIDKNQLWVGIVPRGPDGV--------QLSSAYDKRFSEECLSSLGKALSNIARVVPHGL 556
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W QG+ ++ K LF+E ++
Sbjct: 557 LVFFPSYPVMEKSLEFWQVQGLARKVEALKPLFVEPRN 594
Score = 47.8 bits (112), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN- 484
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQH 62
Query: 485 --------------------AHPL------------------DVTKLLYCSRTVPEIEKV 506
+ L D+ K++Y SRT ++ +V
Sbjct: 63 LRDAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 123 IREL---------RNTAYRPKVCVLGSREQLCIHPEVKKQE 154
>gi|50510779|dbj|BAD32375.1| mKIAA1088 protein [Mus musculus]
Length = 1211
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 174 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 233
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 234 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 289
Query: 154 KEADSAKLREEY 165
+ +L++E+
Sbjct: 290 RVTQQGELQQEF 301
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 174 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 233
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 234 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 289
Query: 809 KEADSAKLREEY 820
+ +L++E+
Sbjct: 290 RVTQQGELQQEF 301
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V I PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 507 IIDKNQLWVGIVPRGPDGV--------QLSSAYDKRFSEECLSSLGKALSNIARVVPHGL 558
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W QG+ ++ K LF+E ++
Sbjct: 559 LVFFPSYPVMEKSLEFWQVQGLARKVEALKPLFVEPRN 596
Score = 47.8 bits (112), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN- 484
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 6 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQH 64
Query: 485 --------------------AHPL------------------DVTKLLYCSRTVPEIEKV 506
+ L D+ K++Y SRT ++ +V
Sbjct: 65 LRDAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQV 124
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 125 IREL---------RNTAYRPKVCVLGSREQLCIHPEVKKQE 156
>gi|262263441|ref|NP_001001882.3| regulator of telomere elongation helicase 1 isoform 1 [Mus
musculus]
Length = 1209
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 154 KEADSAKLREEY 165
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 809 KEADSAKLREEY 820
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V I PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 505 IIDKNQLWVGIVPRGPDGV--------QLSSAYDKRFSEECLSSLGKALSNIARVVPHGL 556
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W QG+ ++ K LF+E ++
Sbjct: 557 LVFFPSYPVMEKSLEFWQVQGLARKVEALKPLFVEPRN 594
Score = 47.8 bits (112), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN- 484
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQH 62
Query: 485 --------------------AHPL------------------DVTKLLYCSRTVPEIEKV 506
+ L D+ K++Y SRT ++ +V
Sbjct: 63 LRDAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 123 IREL---------RNTAYRPKVCVLGSREQLCIHPEVKKQE 154
>gi|46452191|gb|AAS98192.1| DEAH helicase isoform 1 [Mus spretus]
Length = 1209
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 154 KEADSAKLREEY 165
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 809 KEADSAKLREEY 820
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V I PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 505 IIDKNQLWVGIVPRGPDGV--------QLSSAYDKRFSEECLSSLGKALSNIARVVPHGL 556
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W QG+ ++ K LF+E ++
Sbjct: 557 LVFFPSYPVMEKSLEFWQVQGLARKVEALKPLFVEPRN 594
Score = 46.2 bits (108), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN- 484
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQH 62
Query: 485 --------------------AHPL------------------DVTKLLYCSRTVPEIEKV 506
+ L D+ K++Y SRT + +V
Sbjct: 63 LRDAISSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQPTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 123 IREL---------RNTAYRPKVCVLGSREQLCIHPEVKKQE 154
>gi|38707232|gb|AAR27234.1| DEAH helicase isoform 1 [Mus musculus]
Length = 1209
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 154 KEADSAKLREEY 165
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 809 KEADSAKLREEY 820
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V I PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 505 IIDKNQLWVGIVPRGPDGV--------QLSSAYDKRFSEECLSSLGKALSNIARVVPHGL 556
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W QG+ ++ K LF+E ++
Sbjct: 557 LVFFPSYPVMEKSLEFWQVQGLARKVEALKPLFVEPRN 594
Score = 47.8 bits (112), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN- 484
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQH 62
Query: 485 --------------------AHPL------------------DVTKLLYCSRTVPEIEKV 506
+ L D+ K++Y SRT ++ +V
Sbjct: 63 LRDAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 123 IREL---------RNTAYRPKVCVLGSREQLCIHPEVKKQE 154
>gi|38707224|gb|AAR27230.1| DEAH helicase isoform 4 [Mus spretus]
Length = 1165
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 154 KEADSAKLREEY 165
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 809 KEADSAKLREEY 820
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V I PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 505 IIDKNQLWVGIVPRGPDGV--------QLSSAYDKRFSEECLSSLGKALSNIARVVPHGL 556
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W QG+ ++ K LF+E ++
Sbjct: 557 LVFFPSYPVMEKSLEFWQVQGLARKVEALKPLFVEPRN 594
Score = 46.2 bits (108), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN- 484
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQH 62
Query: 485 --------------------AHPL------------------DVTKLLYCSRTVPEIEKV 506
+ L D+ K++Y SRT + +V
Sbjct: 63 LRDAISSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQPTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 123 IREL---------RNTAYRPKVCVLGSREQLCIHPEVKKQE 154
>gi|38707222|gb|AAR27229.1| DEAH helicase isoform 3 [Mus spretus]
Length = 1164
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 154 KEADSAKLREEY 165
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 809 KEADSAKLREEY 820
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V I PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 505 IIDKNQLWVGIVPRGPDGV--------QLSSAYDKRFSEECLSSLGKALSNIARVVPHGL 556
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W QG+ ++ K LF+E ++
Sbjct: 557 LVFFPSYPVMEKSLEFWQVQGLARKVEALKPLFVEPRN 594
Score = 46.2 bits (108), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN- 484
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQH 62
Query: 485 --------------------AHPL------------------DVTKLLYCSRTVPEIEKV 506
+ L D+ K++Y SRT + +V
Sbjct: 63 LRDAISSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQPTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 123 IREL---------RNTAYRPKVCVLGSREQLCIHPEVKKQE 154
>gi|38707238|gb|AAR27237.1| DEAH helicase isoform 5 [Mus musculus]
Length = 1170
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 154 KEADSAKLREEY 165
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 809 KEADSAKLREEY 820
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V I PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 505 IIDKNQLWVGIVPRGPDGV--------QLSSAYDKRFSEECLSSLGKALSNIARVVPHGL 556
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W QG+ ++ K LF+E ++
Sbjct: 557 LVFFPSYPVMEKSLEFWQVQGLARKVEALKPLFVEPRN 594
Score = 47.8 bits (112), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN- 484
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQH 62
Query: 485 --------------------AHPL------------------DVTKLLYCSRTVPEIEKV 506
+ L D+ K++Y SRT ++ +V
Sbjct: 63 LRDAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 123 IREL---------RNTAYRPKVCVLGSREQLCIHPEVKKQE 154
>gi|262263445|ref|NP_001160138.1| regulator of telomere elongation helicase 1 isoform 3 [Mus
musculus]
Length = 1170
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 154 KEADSAKLREEY 165
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 809 KEADSAKLREEY 820
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V I PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 505 IIDKNQLWVGIVPRGPDGV--------QLSSAYDKRFSEECLSSLGKALSNIARVVPHGL 556
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W QG+ ++ K LF+E ++
Sbjct: 557 LVFFPSYPVMEKSLEFWQVQGLARKVEALKPLFVEPRN 594
Score = 47.8 bits (112), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN- 484
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQH 62
Query: 485 --------------------AHPL------------------DVTKLLYCSRTVPEIEKV 506
+ L D+ K++Y SRT ++ +V
Sbjct: 63 LRDAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 123 IREL---------RNTAYRPKVCVLGSREQLCIHPEVKKQE 154
>gi|38707226|gb|AAR27231.1| DEAH helicase isoform 5 [Mus spretus]
Length = 1170
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 154 KEADSAKLREEY 165
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY +A E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 809 KEADSAKLREEY 820
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V I PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 505 IIDKNQLWVGIVPRGPDGV--------QLSSAYDKRFSEECLSSLGKALSNIARVVPHGL 556
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W QG+ ++ K LF+E ++
Sbjct: 557 LVFFPSYPVMEKSLEFWQVQGLARKVEALKPLFVEPRN 594
Score = 46.2 bits (108), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN- 484
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQH 62
Query: 485 --------------------AHPL------------------DVTKLLYCSRTVPEIEKV 506
+ L D+ K++Y SRT + +V
Sbjct: 63 LRDAISSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQPTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 123 IREL---------RNTAYRPKVCVLGSREQLCIHPEVKKQE 154
>gi|308499977|ref|XP_003112174.1| hypothetical protein CRE_29819 [Caenorhabditis remanei]
gi|308268655|gb|EFP12608.1| hypothetical protein CRE_29819 [Caenorhabditis remanei]
Length = 385
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 94/193 (48%), Gaps = 12/193 (6%)
Query: 34 VCDFYEKFDAVGREAP---LAPG-VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 89
C +Y KFDA+ + L G I ++G + LCPYF++RQ A++++ Y
Sbjct: 170 ACHYYNKFDAMTTDKMNEVLDKGDAMDIEDFVKLGTQNSLCPYFMSRQRSETAELILLPY 229
Query: 90 HYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL--- 146
+Y++DPK+ +L ++S+V+FDEAHN++++C + S ++ I + ++ +
Sbjct: 230 NYIIDPKMRRRYKLDL-KNSIVIFDEAHNLESICESNASAELSSTNIALCIEELKKVLAL 288
Query: 147 ----EGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGN 202
E T + + D+ + L + L + + VL L +E L ++ N
Sbjct: 289 LVDEEETARAEADMDTEAFGNQKIDLTKKLIENLRTEDLMAVLEKAFLLEEELDKLYESN 348
Query: 203 IRTAEHFVGFLKR 215
+ F ++++
Sbjct: 349 LLKVSPFHHWMEK 361
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 63/107 (58%), Gaps = 5/107 (4%)
Query: 689 VCDFYEKFDAVGREAP---LAPG-VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 744
C +Y KFDA+ + L G I ++G + LCPYF++RQ A++++ Y
Sbjct: 170 ACHYYNKFDAMTTDKMNEVLDKGDAMDIEDFVKLGTQNSLCPYFMSRQRSETAELILLPY 229
Query: 745 HYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTI 791
+Y++DPK+ +L ++S+V+FDEAHN++++C + S ++ I
Sbjct: 230 NYIIDPKMRRRYKLDL-KNSIVIFDEAHNLESICESNASAELSSTNI 275
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 36/135 (26%)
Query: 433 VFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAH----PL 488
V FP+E Y Q +M + LD K LE P+GTGKT SLL +A++ PL
Sbjct: 21 VKFPFE-PYECQRIFMKNVVDVLDRKLDAALESPTGTGKTLSLLCSTLAWVQKQKEIKPL 79
Query: 489 D-----------------------VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN 525
D + + Y SRT ++E+VV EL R ++K
Sbjct: 80 DFSTWQSSGAGGAEKTEEKLKNSFIPTIFYASRTHSQLEQVVHELNRTEYKWVK------ 133
Query: 526 MTGLVLSSRKNLCIH 540
+L SR++ CI+
Sbjct: 134 --TTILGSREHFCIN 146
>gi|326428226|gb|EGD73796.1| hypothetical protein PTSG_05489 [Salpingoeca sp. ATCC 50818]
Length = 1032
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 93/393 (23%), Positives = 151/393 (38%), Gaps = 81/393 (20%)
Query: 25 RHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKI 84
RHK C +Y + G++ G+ I L ++GR CPY+LAR + A++
Sbjct: 186 RHKVASQ--ECSYYFQVPK-GKKDLADHGIADIEDLVKIGRSASCCPYYLARDGLESAQL 242
Query: 85 VVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 144
V Y+Y+L+ + ++ +SVV+ DEAHNI++VC D+ S + + ++
Sbjct: 243 VFVPYNYILNSRTRRNQRIDV-ETSVVILDEAHNIESVCEDASSFDL-------STTDLA 294
Query: 145 TLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIR 204
L + AD+ L E A DA++ L VL E + +P I
Sbjct: 295 AFSNELARLSTADAEVLGELTA------DDAKA-------LHKLVLQIEEKLDALPVKIG 341
Query: 205 TAEHFVG-FLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEH 263
G F+ RF E L QV+ P ++A + S+ H
Sbjct: 342 APMQRSGDFIFRFFEGLNMTFETVQVIL-------------PKVEQAADAVGALKSSRCH 388
Query: 264 LKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVV 323
L + A +LR L D +++
Sbjct: 389 L------------------------------------SKFADILRLLFGAETKDNLAMIR 412
Query: 324 ITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVF-DRFQTVVITS 382
+ + S + ++ AP + F C SS A+K + D ++VV+TS
Sbjct: 413 QYYYVNVSESKRQQQQQQQSGWAVAAPAGNPRTISFWCFTSSFAMKSLIQDGVRSVVLTS 472
Query: 383 GTLSPLDMYPKILNFQPVIMHSFSMTLARPCLL 415
GTLSPLD F +M F + L P ++
Sbjct: 473 GTLSPLD------TFAAELMVDFPIRLENPHII 499
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 680 RHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKI 739
RHK C +Y + G++ G+ I L ++GR CPY+LAR + A++
Sbjct: 186 RHKVASQ--ECSYYFQVPK-GKKDLADHGIADIEDLVKIGRSASCCPYYLARDGLESAQL 242
Query: 740 VVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 783
V Y+Y+L+ + ++ +SVV+ DEAHNI++VC D+ S
Sbjct: 243 VFVPYNYILNSRTRRNQRIDV-ETSVVILDEAHNIESVCEDASS 285
>gi|145525869|ref|XP_001448751.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416306|emb|CAK81354.1| unnamed protein product [Paramecium tetraurelia]
Length = 913
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY K A + + ++ + K+ G +CPY+ R+ + +A +++ Y+YLLD
Sbjct: 172 CQFYNKDSLPNIAAQNSKLINTLEESKQFGHNNNVCPYYFERERLTNADLILLPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 154
+ +N+V+ E +S+++FDEAHN+ + + S IN +++A + LE LKE+
Sbjct: 232 REFSNIVNTE---NSIIIFDEAHNVPSAAENGQSFFINETIVQEAK---KELERWLKELY 285
Query: 155 E 155
E
Sbjct: 286 E 286
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY K A + + ++ + K+ G +CPY+ R+ + +A +++ Y+YLLD
Sbjct: 172 CQFYNKDSLPNIAAQNSKLINTLEESKQFGHNNNVCPYYFERERLTNADLILLPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 809
+ +N+V+ E +S+++FDEAHN+ + + S IN +++A + LE LKE+
Sbjct: 232 REFSNIVNTE---NSIIIFDEAHNVPSAAENGQSFFINETIVQEAK---KELERWLKELY 285
Query: 810 E 810
E
Sbjct: 286 E 286
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 9/100 (9%)
Query: 421 NYAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIV 480
N L I++ ++FP++ Y Q YM + + LD K + LLE P+GTGKT SLL +
Sbjct: 32 NIQEKLNIENTEIYFPHK-PYDVQVKYMESVVQILDKKCNGLLESPTGTGKTLSLLCSTM 90
Query: 481 AYMNAHPLDVT--------KLLYCSRTVPEIEKVVEELAR 512
+++ H + K++Y SRT ++++V +EL R
Sbjct: 91 GWLHKHRKEQQKSGASSNLKIIYASRTHAQLKQVAQELKR 130
>gi|170034957|ref|XP_001845338.1| fanconi anemia group J protein [Culex quinquefasciatus]
gi|229891619|sp|B0W9F4.1|RTEL1_CULQU RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|167876796|gb|EDS40179.1| fanconi anemia group J protein [Culex quinquefasciatus]
Length = 978
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 67/115 (58%), Gaps = 4/115 (3%)
Query: 34 VCDFYEKFDAVGREAPLAPG--VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 91
C FY + +A +E P G + I L + +L CP+F++++ I +A ++ Y+Y
Sbjct: 185 ACSFYSRVEAC-KERPEITGSTIMDIEDLVRVSTKLKACPFFMSKELIENADVLFMPYNY 243
Query: 92 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 146
LLDPK + ELA +++++ DEAHN+D +C +S S++I I + ++ ++
Sbjct: 244 LLDPKARKANNLELA-NTIIILDEAHNVDKMCEESASMQIRSSDIALCIDDVTSI 297
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 67/115 (58%), Gaps = 4/115 (3%)
Query: 689 VCDFYEKFDAVGREAPLAPG--VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
C FY + +A +E P G + I L + +L CP+F++++ I +A ++ Y+Y
Sbjct: 185 ACSFYSRVEAC-KERPEITGSTIMDIEDLVRVSTKLKACPFFMSKELIENADVLFMPYNY 243
Query: 747 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 801
LLDPK + ELA +++++ DEAHN+D +C +S S++I I + ++ ++
Sbjct: 244 LLDPKARKANNLELA-NTIIILDEAHNVDKMCEESASMQIRSSDIALCIDDVTSI 297
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S + RD+ I + G+ ++ ++P G++ FF SY L +W + GI + +
Sbjct: 536 LNSSYGNRDNPKYISSLGRTILSFCPIIPGGLLVFFPSYPLLNKCQEAWQETGIWAQISR 595
Query: 640 RKLLFIE 646
K +F+E
Sbjct: 596 TKPIFVE 602
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
+I+ +PV FP+E Y Q YM + + L + +LE P+GTGKT SLL +A++
Sbjct: 5 LINGIPVNFPFEP-YQVQRDYMARVIECLQNSSNGVLESPTGTGKTLSLLCSSLAWI 60
>gi|195162511|ref|XP_002022098.1| GL14463 [Drosophila persimilis]
gi|229891625|sp|B4GU19.1|RTEL1_DROPE RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|194103996|gb|EDW26039.1| GL14463 [Drosophila persimilis]
Length = 1009
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 51 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 110
P + I L +G++L +CPY+ +++ + A I Y+YLLDPK EL +++
Sbjct: 190 GPSIMDIEDLVRVGQKLKMCPYYASKELVAQADITFMPYNYLLDPKARKANKIELG-NTI 248
Query: 111 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
++ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 249 IILDEAHNIEKICEESASVQIRSSDVAMAIEDV 281
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 706 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 765
P + I L +G++L +CPY+ +++ + A I Y+YLLDPK EL +++
Sbjct: 190 GPSIMDIEDLVRVGQKLKMCPYYASKELVAQADITFMPYNYLLDPKARKANKIELG-NTI 248
Query: 766 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
++ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 249 IILDEAHNIEKICEESASVQIRSSDVAMAIEDV 281
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S F+ RD+ I + GQ ++++A +VPDG++ FF SY L V +W G+ ++
Sbjct: 527 LISNFKNRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKCVDAWQASGLWADISC 586
Query: 640 RKLLFIE 646
+K +F+E
Sbjct: 587 KKPIFVE 593
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 63/155 (40%), Gaps = 48/155 (30%)
Query: 427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM--- 483
+I +PV FP+E Y Q YM ++ L + +LE P+GTGKT SLL +A++
Sbjct: 5 VIAGIPVHFPFEP-YNVQRDYMEKVIICLRDGTNGVLESPTGTGKTLSLLCASLAWIRTR 63
Query: 484 ------------------------------------NAHPLDVTKLLYCSRTVPEIEKVV 507
A+ V K++Y SRT ++ + +
Sbjct: 64 QSEHQQQMIKLKATSKEGGPGSGPGGDLSELAMTVGQANNWGVPKVIYASRTHSQLNQAM 123
Query: 508 EELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
EL R NM +VL SR LCIH E
Sbjct: 124 RELKR--------TAYANMRSVVLGSRDQLCIHPE 150
Score = 43.5 bits (101), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 541 SEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLL 600
S F+ RD+ I + GQ ++++A +VPDG++ FF SY L + L
Sbjct: 529 SNFKNRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKCVDA-------WQASGLW 581
Query: 601 VDIACVVP 608
DI+C P
Sbjct: 582 ADISCKKP 589
>gi|198467617|ref|XP_001354453.2| GA17940 [Drosophila pseudoobscura pseudoobscura]
gi|229891755|sp|Q29FS3.2|RTEL1_DROPS RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|198149329|gb|EAL31506.2| GA17940 [Drosophila pseudoobscura pseudoobscura]
Length = 1009
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 51 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 110
P + I L +G++L +CPY+ +++ + A I Y+YLLDPK EL +++
Sbjct: 190 GPSIMDIEDLVRVGQKLKMCPYYASKELVAQADITFMPYNYLLDPKARKANKIELG-NTI 248
Query: 111 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
++ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 249 IILDEAHNIEKICEESASVQIRSSDVAMAIEDV 281
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 706 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 765
P + I L +G++L +CPY+ +++ + A I Y+YLLDPK EL +++
Sbjct: 190 GPSIMDIEDLVRVGQKLKMCPYYASKELVAQADITFMPYNYLLDPKARKANKIELG-NTI 248
Query: 766 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
++ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 249 IILDEAHNIEKICEESASVQIRSSDVAMAIEDV 281
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S F+ RD+ I + GQ ++++A +VPDG++ FF SY L V +W G+ ++
Sbjct: 527 LISNFKNRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKCVDAWQASGLWADISC 586
Query: 640 RKLLFIE 646
+K +F+E
Sbjct: 587 KKPIFVE 593
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 63/155 (40%), Gaps = 48/155 (30%)
Query: 427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM--- 483
+I +PV FP+E Y Q YM ++ L + +LE P+GTGKT SLL +A++
Sbjct: 5 VIAGIPVHFPFEP-YNVQRDYMEKVIICLRDGTNGVLESPTGTGKTLSLLCASLAWIRTR 63
Query: 484 ------------------------------------NAHPLDVTKLLYCSRTVPEIEKVV 507
A+ V K++Y SRT ++ + +
Sbjct: 64 QSEHQQQMIKLKATSKEGGPGSGPGGDLSELAMTVGQANNWGVPKVIYASRTHSQLNQAM 123
Query: 508 EELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
EL R NM +VL SR LCIH E
Sbjct: 124 RELKR--------TAYANMRSVVLGSRDQLCIHPE 150
Score = 43.1 bits (100), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 541 SEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLL 600
S F+ RD+ I + GQ ++++A +VPDG++ FF SY L + L
Sbjct: 529 SNFKNRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKCVDA-------WQASGLW 581
Query: 601 VDIACVVP 608
DI+C P
Sbjct: 582 ADISCKKP 589
>gi|195131929|ref|XP_002010396.1| GI15901 [Drosophila mojavensis]
gi|229891624|sp|B4L1Z2.1|RTEL1_DROMO RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|193908846|gb|EDW07713.1| GI15901 [Drosophila mojavensis]
Length = 1014
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Query: 51 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 110
P + I L ++G+ L +CPY+ +++ + A I Y+YLLDPK EL+ +++
Sbjct: 191 GPSIMDIEDLVKVGQRLKMCPYYASKELVSSADITFMPYNYLLDPKARKANKIELS-NTI 249
Query: 111 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLRE 163
V+ DEAHNI+ +C +S SV+I + A+ ++ + DS E
Sbjct: 250 VILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHIMKIFTSADSQDSGGPEE 302
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Query: 706 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 765
P + I L ++G+ L +CPY+ +++ + A I Y+YLLDPK EL+ +++
Sbjct: 191 GPSIMDIEDLVKVGQRLKMCPYYASKELVSSADITFMPYNYLLDPKARKANKIELS-NTI 249
Query: 766 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLRE 818
V+ DEAHNI+ +C +S SV+I + A+ ++ + DS E
Sbjct: 250 VILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHIMKIFTSADSQDSGGPEE 302
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S ++ RD+ I + GQ +++++ +VPDG++ FF SY L V +W G+ +L
Sbjct: 527 LISNYKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNQCVDAWQASGLWADLSS 586
Query: 640 RKLLFIE 646
RK +F+E
Sbjct: 587 RKPIFLE 593
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 64/156 (41%), Gaps = 49/156 (31%)
Query: 427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM--- 483
+I +PV FP+E Y Q A+M ++ L + +LE P+GTGKT SLL +A++
Sbjct: 5 IIAGIPVHFPFE-PYEVQRAFMEKVIMCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTR 63
Query: 484 -------------------------------------NAHPLDVTKLLYCSRTVPEIEKV 506
A+ V K++Y SRT ++ +
Sbjct: 64 QSEHQINMQKLQMEQQQRQATGGSATGAISDLALTMGKANNWGVPKVIYASRTHSQLTQA 123
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
+ EL R +M +VL SR LCIH +
Sbjct: 124 MRELKR--------TAYASMRSVVLGSRDQLCIHPD 151
>gi|348687642|gb|EGZ27456.1| hypothetical protein PHYSODRAFT_554000 [Phytophthora sojae]
Length = 1025
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C +++K P V+ I L ++ ++ C YF AR+A+ HA IV Y+YLLD
Sbjct: 340 CSYFKKRKKANDLRRHVPPVWDIEDLVKLAQKHRECAYFHAREALDHANIVFAPYNYLLD 399
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
P I V L + S++V DEAHN+++ C S SV +
Sbjct: 400 PSIREAVGITL-KDSIIVLDEAHNVEDTCRSSASVEV 435
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C +++K P V+ I L ++ ++ C YF AR+A+ HA IV Y+YLLD
Sbjct: 340 CSYFKKRKKANDLRRHVPPVWDIEDLVKLAQKHRECAYFHAREALDHANIVFAPYNYLLD 399
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
P I V L + S++V DEAHN+++ C S SV +
Sbjct: 400 PSIREAVGITL-KDSIIVLDEAHNVEDTCRSSASVEV 435
>gi|253744346|gb|EET00567.1| TFIIH basal transcription factor complex helicase subunit [Giardia
intestinalis ATCC 50581]
Length = 834
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 143/335 (42%), Gaps = 49/335 (14%)
Query: 69 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 128
+CPYF R+ + A I+V SY+Y+LDPK A + L R+++++ DEAHN++ D++S
Sbjct: 215 VCPYFANRRLLHTADIIVGSYNYILDPKCAGPLGAILDRNTLLIIDEAHNLEYAACDAMS 274
Query: 129 VRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANP 188
+ ++ + + +I+ + + + + L+ R ++ ++ +L +
Sbjct: 275 MHLSYKLVVDCEKSIRMMSDLIAHSTLPPPPPFSPDRS-LIRKERAIKTVQQDSRLLFSG 333
Query: 189 VLPDEI--LQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPA 246
P ++ L I+T + F+ L R + LK +L + KD+ S P
Sbjct: 334 SAPADVLLLSSTSYAAIKTPQQFLSGLLRIVRLLKEQLSDR---------LTKDVVSLPH 384
Query: 247 PSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASL 306
+++ L Q V ES FL+ + + R + L L
Sbjct: 385 MDVLN----------------LMRLQFVGES---FLQLSPEYLHYYQSYYRIFDKNLPQL 425
Query: 307 LRTLEITNLTDFSSLVVITHLATLVS--SYTKGFAIIVEPFSDKA-------------PT 351
++ L + L F S+ + H T S SY K F +I +P +
Sbjct: 426 VQFLSL--LGYFGSVETLKHFRTYSSSLSYEKFFTVIQKPQTSTGDDDTLLAHTQQIFEH 483
Query: 352 VPNPVLY-FCCLDSSLAIKPVFDRFQTVVITSGTL 385
+ LY C D +A++PV+ F +++ S TL
Sbjct: 484 NKHQTLYRLVCQDPFIALRPVYQYFPLIIMMSATL 518
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 46/68 (67%)
Query: 724 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 783
+CPYF R+ + A I+V SY+Y+LDPK A + L R+++++ DEAHN++ D++S
Sbjct: 215 VCPYFANRRLLHTADIIVGSYNYILDPKCAGPLGAILDRNTLLIIDEAHNLEYAACDAMS 274
Query: 784 VRINRRTI 791
+ ++ + +
Sbjct: 275 MHLSYKLV 282
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 15/93 (16%)
Query: 431 LPVFFPYEYIYPEQYAYM----------VELKKALDAKGHCLLEMPSGTGKTTSLLSLIV 480
LPV +PY + +Q M +E K+AL LLE +G+GKT ++LS +
Sbjct: 8 LPVVYPYPTVSKQQLQIMEHVHNVLRTGIEGKRALS-----LLEAKTGSGKTLAVLSTAI 62
Query: 481 AYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513
++ +A+P ++++++ RT+P ++ V+ E+ L
Sbjct: 63 SFWDAYPTAISRIVFLCRTIPVVDHVLNEIFHL 95
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW--YDQGIIDNL 637
L + F R S ++NYG++L I+ DG++ FF SY ++E ++ W + +
Sbjct: 591 LTTQFFFRTTPSAVQNYGRILAQISSSTSDGLIVFFPSYRFMEDLITLWNITSSNMFRTI 650
Query: 638 QKRKLLFIETQDALDS 653
KL+F ET D +++
Sbjct: 651 TSNKLVFFETPDPIET 666
>gi|403341333|gb|EJY69968.1| Regulator of telomere elongation helicase 1 [Oxytricha trifallax]
Length = 1216
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 74/130 (56%), Gaps = 6/130 (4%)
Query: 32 IPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 91
+ V F+EK ++ L VY I L ++G+ LCPY+LAR + + I V YHY
Sbjct: 501 LNVNPFFEKM----QQKILTQPVYDIEDLNKVGKMHSLCPYYLARSKLSNVDIAVIPYHY 556
Query: 92 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLK 151
+L P I + ++ +SV++FDEAHN++ +C + +S +++ + + +Q LE +
Sbjct: 557 ILTPSIRRKLPLKIE-NSVIIFDEAHNLERICEEIMSFKLSVDKLIQCEKILQKLETVYR 615
Query: 152 EMKEADSAKL 161
E K++ SA +
Sbjct: 616 E-KDSMSANV 624
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 74/130 (56%), Gaps = 6/130 (4%)
Query: 687 IPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
+ V F+EK ++ L VY I L ++G+ LCPY+LAR + + I V YHY
Sbjct: 501 LNVNPFFEKM----QQKILTQPVYDIEDLNKVGKMHSLCPYYLARSKLSNVDIAVIPYHY 556
Query: 747 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLK 806
+L P I + ++ +SV++FDEAHN++ +C + +S +++ + + +Q LE +
Sbjct: 557 ILTPSIRRKLPLKIE-NSVIIFDEAHNLERICEEIMSFKLSVDKLIQCEKILQKLETVYR 615
Query: 807 EMKEADSAKL 816
E K++ SA +
Sbjct: 616 E-KDSMSANV 624
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 431 LPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAH 486
+ V FPYE Y Q Y+ L KAL K + LLE P+GTGKT LLS + ++ A+
Sbjct: 175 IQVHFPYEKPYQCQENYIKSLVKALRKKQNALLESPTGTGKTLCLLSGTLGFLKAY 230
>gi|17506821|ref|NP_492769.1| Protein RTEL-1 [Caenorhabditis elegans]
gi|75018688|sp|Q93575.3|RTEL1_CAEEL RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|3876338|emb|CAB02102.1| Protein RTEL-1 [Caenorhabditis elegans]
Length = 994
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 62/107 (57%), Gaps = 5/107 (4%)
Query: 34 VCDFYEKFDAVGREAP---LAPG-VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 89
C +Y KFDA + L G I ++G + LCPYF++RQ A++++ Y
Sbjct: 168 ACHYYNKFDACTTDKMTEFLDKGEAMDIEDFVKLGTQNSLCPYFMSRQRSETAELILLPY 227
Query: 90 HYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTI 136
+Y++DPK+ +L ++S+V+FDEAHN++++C + S + +I
Sbjct: 228 NYIIDPKMRRRYKLDL-KNSIVIFDEAHNLESICESNASAELTSTSI 273
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 62/107 (57%), Gaps = 5/107 (4%)
Query: 689 VCDFYEKFDAVGREAP---LAPG-VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 744
C +Y KFDA + L G I ++G + LCPYF++RQ A++++ Y
Sbjct: 168 ACHYYNKFDACTTDKMTEFLDKGEAMDIEDFVKLGTQNSLCPYFMSRQRSETAELILLPY 227
Query: 745 HYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTI 791
+Y++DPK+ +L ++S+V+FDEAHN++++C + S + +I
Sbjct: 228 NYIIDPKMRRRYKLDL-KNSIVIFDEAHNLESICESNASAELTSTSI 273
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 36/139 (25%)
Query: 431 LPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN----AH 486
L V FP+E Y Q +M + LD K LE P+GTGKT SLL +A++
Sbjct: 17 LSVKFPFE-PYECQRIFMKNVVDVLDRKLDAALESPTGTGKTLSLLCSTLAWVQRQKETK 75
Query: 487 PLD-----------------------VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEE 523
PLD V + Y SRT ++E+VV EL R ++K
Sbjct: 76 PLDFATWQTSGAGGAEKTDEKLKSAYVPTIFYASRTHSQLEQVVHELNRTEYKWVKTT-- 133
Query: 524 INMTGLVLSSRKNLCIHSE 542
+L SR++ CI+ +
Sbjct: 134 ------ILGSREHFCINQK 146
>gi|123505191|ref|XP_001328927.1| helicase [Trichomonas vaginalis G3]
gi|121911876|gb|EAY16704.1| helicase, putative [Trichomonas vaginalis G3]
Length = 884
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 67/116 (57%), Gaps = 7/116 (6%)
Query: 55 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 114
+ I LK+ R+ CPYF++R+ ++ A IV Y+Y LDPKI + +L +++ D
Sbjct: 230 FEIEDLKDWCRKNKGCPYFISRKMMMAADIVFCPYNYFLDPKIKGQMQLDLTGVYLII-D 288
Query: 115 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVE 170
EAHNI+N C D S +R+ +E A+ ++ K +K++D LR+ + ++E
Sbjct: 289 EAHNIENSCRDGGSFHQSRKDLEWALMYLR------KSIKKSDIPSLRKAFMIVLE 338
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 67/116 (57%), Gaps = 7/116 (6%)
Query: 710 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 769
+ I LK+ R+ CPYF++R+ ++ A IV Y+Y LDPKI + +L +++ D
Sbjct: 230 FEIEDLKDWCRKNKGCPYFISRKMMMAADIVFCPYNYFLDPKIKGQMQLDLTGVYLII-D 288
Query: 770 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVE 825
EAHNI+N C D S +R+ +E A+ ++ K +K++D LR+ + ++E
Sbjct: 289 EAHNIENSCRDGGSFHQSRKDLEWALMYLR------KSIKKSDIPSLRKAFMIVLE 338
Score = 44.7 bits (104), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 13/96 (13%)
Query: 565 VVPDGVVCFFTS----------YLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCF 614
+ PD VV F + + YLES R+D+++ ++L+ I V+P+GV+ F
Sbjct: 503 ISPDQVVGFTITSCDNVTLSSRHQYLESQ-GMRNDVNL--KLAEILLHILPVIPNGVLFF 559
Query: 615 FTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
TS+ +L ++ +W G+ + + K K +F ET D+
Sbjct: 560 VTSHSFLMRMLDAWQKAGLYEKIDKIKKIFYETPDS 595
Score = 41.2 bits (95), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 423 AMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
A + + V FP+E Y Q A M + K++ + +LE P+GTGK+ +LLS +A+
Sbjct: 7 AHQFKVAGIEVPFPHEKPYAAQMALMAGVIKSMRTGQNAILESPTGTGKSIALLSAALAF 66
Query: 483 MNAH 486
+
Sbjct: 67 QKSQ 70
>gi|111493941|gb|AAI05579.1| Rtel1 protein [Mus musculus]
Length = 1203
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 5/132 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVETKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 154 KEADSAKLREEY 165
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 5/132 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVETKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287
Query: 809 KEADSAKLREEY 820
+ +L++E+
Sbjct: 288 RVTQQGELQQEF 299
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V I PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 505 IIDKNQLWVGIVPRGPDGV--------QLSSAYDKRFSEECLSSLGKALSNIARVVPHGL 556
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W QG+ ++ K LF+E ++
Sbjct: 557 LVFFPSYPVMEKSLEFWQVQGLARKVEALKPLFVEPRN 594
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN- 484
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQH 62
Query: 485 --------------------AHPL------------------DVTKLLYCSRTVPEIEKV 506
+ L D+ K++Y SRT ++ +V
Sbjct: 63 LRDAVSSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 123 IREL---------RNTAYRPKVCVLGSREQLCIHPEVKKQE 154
>gi|268566755|ref|XP_002639805.1| C. briggsae CBR-BCH-1 protein [Caenorhabditis briggsae]
gi|229891627|sp|A8WS58.1|RTEL1_CAEBR RecName: Full=Regulator of telomere elongation helicase 1 homolog
Length = 994
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 64/106 (60%), Gaps = 5/106 (4%)
Query: 35 CDFYEKFDAVGREAP---LAPG-VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 90
C +Y KFDA+ + L G I ++G + +CPYF++RQ A++++ Y+
Sbjct: 169 CHYYNKFDALTTDKANEILEKGEAMDIEDFVKIGTQNSICPYFMSRQRSETAELILLPYN 228
Query: 91 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTI 136
Y++DPK+ +L ++S+V+FDEAHN++++C + S ++ +I
Sbjct: 229 YIIDPKMRRRYKLDL-KNSIVIFDEAHNLESICESNASAELSSTSI 273
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 64/106 (60%), Gaps = 5/106 (4%)
Query: 690 CDFYEKFDAVGREAP---LAPG-VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 745
C +Y KFDA+ + L G I ++G + +CPYF++RQ A++++ Y+
Sbjct: 169 CHYYNKFDALTTDKANEILEKGEAMDIEDFVKIGTQNSICPYFMSRQRSETAELILLPYN 228
Query: 746 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTI 791
Y++DPK+ +L ++S+V+FDEAHN++++C + S ++ +I
Sbjct: 229 YIIDPKMRRRYKLDL-KNSIVIFDEAHNLESICESNASAELSSTSI 273
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 36/135 (26%)
Query: 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN----AHPLD- 489
FP+E Y Q +M + LD K LE P+GTGKT SLL +A++ + P+D
Sbjct: 21 FPFE-PYECQRIFMKNVIDVLDMKLDAALESPTGTGKTLSLLCSTLAWVQKLKESKPMDF 79
Query: 490 ----------------------VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMT 527
+ + Y SRT ++E+VV EL R ++K
Sbjct: 80 ATWQSSGAGGAEKTEDKLKNSFIPTIFYASRTHSQLEQVVHELNRTEYKWVKTT------ 133
Query: 528 GLVLSSRKNLCIHSE 542
+L SR++ CI+ +
Sbjct: 134 --ILGSREHFCINQK 146
>gi|149033944|gb|EDL88727.1| similar to helicase-like protein NHL isoform 2 [Rattus norvegicus]
Length = 1264
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHNIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEVINQVLE---EQA 287
Query: 154 KEADSAKLREEY 165
+ A +L++E+
Sbjct: 288 RVAQHGELQQEF 299
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHNIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEVINQVLE---EQA 287
Query: 809 KEADSAKLREEY 820
+ A +L++E+
Sbjct: 288 RVAQHGELQQEF 299
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V + PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 492 IIDKNQLWVGVIPRGPDGV--------QLSSAYDKRFSEECLSSLGKALGNIARVVPHGL 543
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W QG+ ++ K LF+E ++
Sbjct: 544 LVFFPSYPVMEKSLEFWQAQGMSKKVEALKPLFVEPRN 581
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY--- 482
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWREH 62
Query: 483 --------------------------------MNAHPL----DVTKLLYCSRTVPEIEKV 506
N + D+ K++Y SRT ++ +V
Sbjct: 63 LRDAVSSLKIAERVQGELFASRTLSSWRSAADANGDSIDCYTDIPKIIYASRTHSQLTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 123 IGEL---------RNTSYRPKVCVLGSREQLCIHPEVKKQE 154
>gi|300797873|ref|NP_001178786.1| regulator of telomere elongation helicase 1 [Rattus norvegicus]
gi|229891752|sp|Q5RJZ1.2|RTEL1_RAT RecName: Full=Regulator of telomere elongation helicase 1
Length = 1274
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHNIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEVINQVLE---EQA 287
Query: 154 KEADSAKLREEY 165
+ A +L++E+
Sbjct: 288 RVAQHGELQQEF 299
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 232 AKSRKAHNIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEVINQVLE---EQA 287
Query: 809 KEADSAKLREEY 820
+ A +L++E+
Sbjct: 288 RVAQHGELQQEF 299
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V + PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 505 IIDKNQLWVGVIPRGPDGV--------QLSSAYDKRFSEECLSSLGKALGNIARVVPHGL 556
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W QG+ ++ K LF+E ++
Sbjct: 557 LVFFPSYPVMEKSLEFWQAQGMSKKVEALKPLFVEPRN 594
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY--- 482
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWREH 62
Query: 483 --------------------------------MNAHPL----DVTKLLYCSRTVPEIEKV 506
N + D+ K++Y SRT ++ +V
Sbjct: 63 LRDAVSSLKIAERVQGELFASRTLSSWRSAADANGDSIDCYTDIPKIIYASRTHSQLTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 123 IGEL---------RNTSYRPKVCVLGSREQLCIHPEVKKQE 154
>gi|396080955|gb|AFN82575.1| Rad3/XPD ATP-dependent DNA-binding helicase [Encephalitozoon
romaleae SJ-2008]
Length = 678
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 7/122 (5%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V+ I +LK GR G CPY+ +R A+++ Y+YL+DP+I L +SVV+
Sbjct: 169 VFDIEELKGEGRRCGGCPYYASRILNEDAEVIFAPYNYLIDPRIRENTGIGL-ENSVVII 227
Query: 114 DEAHNIDNVCVDSLSVRINRRTIE----KAVGNIQTLEGTLKEMKEADSAKLREEYARLV 169
DEAHNI++VC S S+ + R IE + +G ++ G L E+K D L + + +L
Sbjct: 228 DEAHNIEDVCRSSGSIELGSRAIEIIQNEILGAVKR-SGILGEIK-LDFINLMDFFRKLR 285
Query: 170 EG 171
EG
Sbjct: 286 EG 287
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 7/122 (5%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V+ I +LK GR G CPY+ +R A+++ Y+YL+DP+I L +SVV+
Sbjct: 169 VFDIEELKGEGRRCGGCPYYASRILNEDAEVIFAPYNYLIDPRIRENTGIGL-ENSVVII 227
Query: 769 DEAHNIDNVCVDSLSVRINRRTIE----KAVGNIQTLEGTLKEMKEADSAKLREEYARLV 824
DEAHNI++VC S S+ + R IE + +G ++ G L E+K D L + + +L
Sbjct: 228 DEAHNIEDVCRSSGSIELGSRAIEIIQNEILGAVKR-SGILGEIK-LDFINLMDFFRKLR 285
Query: 825 EG 826
EG
Sbjct: 286 EG 287
>gi|261334932|emb|CBH17926.1| helicase-like protein, putative [Trypanosoma brucei gambiense
DAL972]
Length = 965
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 35 CDFYEKFDAVGREA---PLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
C+ + +G +A PL+ G V+ I L G + CPY+ AR + A I
Sbjct: 240 CEAVHGYGVLGSKAITHPLSQGRSDKVWDIEDLVTEGVGMECCPYYAARDLVFFAHINFA 299
Query: 88 SYHYLLDPKIANVVSKE--LARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 145
+Y YLLDP I + E L S+++FDEAHN+ VC D+LSV + T+ + I+
Sbjct: 300 TYQYLLDPLIRHECKMEAALKNHSIIIFDEAHNVPQVCQDALSVETSVDTLRLILNEIEP 359
Query: 146 L 146
L
Sbjct: 360 L 360
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 690 CDFYEKFDAVGREA---PLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
C+ + +G +A PL+ G V+ I L G + CPY+ AR + A I
Sbjct: 240 CEAVHGYGVLGSKAITHPLSQGRSDKVWDIEDLVTEGVGMECCPYYAARDLVFFAHINFA 299
Query: 743 SYHYLLDPKIANVVSKE--LARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 800
+Y YLLDP I + E L S+++FDEAHN+ VC D+LSV + T+ + I+
Sbjct: 300 TYQYLLDPLIRHECKMEAALKNHSIIIFDEAHNVPQVCQDALSVETSVDTLRLILNEIEP 359
Query: 801 L 801
L
Sbjct: 360 L 360
>gi|169806602|ref|XP_001828045.1| DNA repair helicase [Enterocytozoon bieneusi H348]
gi|161779173|gb|EDQ31197.1| DNA repair helicase [Enterocytozoon bieneusi H348]
Length = 670
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 43 AVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVS 102
V R +Y I +++ G++ G CPYF +R+ A+I+ Y+Y++DP I +
Sbjct: 159 GVSRLKKQISNIYDIEEIRNSGKKCGGCPYFASREIANEAEIIFAPYNYIIDPHIRKSLD 218
Query: 103 KELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIE 137
EL ++++V+ DEAHNI++ C S +N RT++
Sbjct: 219 IEL-KNAIVIIDEAHNIEDTCRSVGSFELNSRTLD 252
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 698 AVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVS 757
V R +Y I +++ G++ G CPYF +R+ A+I+ Y+Y++DP I +
Sbjct: 159 GVSRLKKQISNIYDIEEIRNSGKKCGGCPYFASREIANEAEIIFAPYNYIIDPHIRKSLD 218
Query: 758 KELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIE 792
EL ++++V+ DEAHNI++ C S +N RT++
Sbjct: 219 IEL-KNAIVIIDEAHNIEDTCRSVGSFELNSRTLD 252
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 49/204 (24%)
Query: 420 ENYAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLI 479
E Y +G V+FPY+ YP Q M + K+ + L+E P+GTGK+ ++L +
Sbjct: 2 ERYKIG----GYTVWFPYK-PYPAQIQTMETMLKSFGSSKCALIESPTGTGKSLAILCAV 56
Query: 480 VAYM------------------------NAHPLDVTKLLYCSRTVPEIEKVVEELARLFD 515
+ Y+ N + + + CSRT +I++++ +L +
Sbjct: 57 MGYLEKKDLNDIIDPKKRRIDNDTENFVNNNQIGNPTIYICSRTHKQIDQLINQLRK--- 113
Query: 516 YYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIA-CVVPDGVVCFF 574
K+N I+ +L SRK CI+S+ DI+ + L+D C+ GV
Sbjct: 114 --TKYNPRIS----ILGSRKQYCINSQLRRALDINTA---CKDLIDTKRCIYKSGVS--- 161
Query: 575 TSYLYLESVFETRDDISVIRNYGQ 598
L+ DI IRN G+
Sbjct: 162 ----RLKKQISNIYDIEEIRNSGK 181
>gi|154419164|ref|XP_001582599.1| helicase [Trichomonas vaginalis G3]
gi|121916835|gb|EAY21613.1| helicase, putative [Trichomonas vaginalis G3]
Length = 1428
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 68/121 (56%), Gaps = 12/121 (9%)
Query: 422 YAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVA 481
YA +M D V FPYE Y Q M + K + + + L+E P+GTGKT +LLS +A
Sbjct: 3 YAQKIMGID--VLFPYEKPYKSQEVVMEKTIKGIASNHNALIESPTGTGKTLALLSASLA 60
Query: 482 YMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHS 541
Y + P + ++Y SRT ++++V+ E RL ++ MT VL+SRK LCI+
Sbjct: 61 YQHVDP-KLDSIIYTSRTHTQLKQVISEYKRL-------PYKVQMT--VLASRKRLCIND 110
Query: 542 E 542
E
Sbjct: 111 E 111
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 55 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 114
+ + +L + G+ CPY+LA+ AKI+ Y+Y LD + S E +S+++FD
Sbjct: 163 FDLEELFQYGKRHAACPYYLAKNLKSSAKIIFSPYNYYLD----TIFSSEFLTNSILIFD 218
Query: 115 EAHNIDNVC 123
EAHNI+N
Sbjct: 219 EAHNIENAA 227
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 710 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 769
+ + +L + G+ CPY+LA+ AKI+ Y+Y LD + S E +S+++FD
Sbjct: 163 FDLEELFQYGKRHAACPYYLAKNLKSSAKIIFSPYNYYLD----TIFSSEFLTNSILIFD 218
Query: 770 EAHNIDNVC 778
EAHNI+N
Sbjct: 219 EAHNIENAA 227
>gi|71756165|ref|XP_828997.1| helicase [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|70834383|gb|EAN79885.1| helicase-like protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 1009
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 35 CDFYEKFDAVGREA---PLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
C+ + +G +A PL+ G V+ I L G + CPY+ AR + A I
Sbjct: 284 CEAVHGYGVLGSKAITHPLSQGRSDKVWDIEDLVTEGVGMECCPYYAARDLVFFAHINFA 343
Query: 88 SYHYLLDPKIANVVSKE--LARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 145
+Y YLLDP I + E L S+++FDEAHN+ VC D+LSV + T+ + I+
Sbjct: 344 TYQYLLDPLIRHECKMEAALKNHSIIIFDEAHNVPQVCQDALSVETSVDTLRLILNEIEP 403
Query: 146 L 146
L
Sbjct: 404 L 404
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 690 CDFYEKFDAVGREA---PLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
C+ + +G +A PL+ G V+ I L G + CPY+ AR + A I
Sbjct: 284 CEAVHGYGVLGSKAITHPLSQGRSDKVWDIEDLVTEGVGMECCPYYAARDLVFFAHINFA 343
Query: 743 SYHYLLDPKIANVVSKE--LARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 800
+Y YLLDP I + E L S+++FDEAHN+ VC D+LSV + T+ + I+
Sbjct: 344 TYQYLLDPLIRHECKMEAALKNHSIIIFDEAHNVPQVCQDALSVETSVDTLRLILNEIEP 403
Query: 801 L 801
L
Sbjct: 404 L 404
>gi|338719447|ref|XP_001492963.3| PREDICTED: regulator of telomere elongation helicase 1-like [Equus
caballus]
Length = 1344
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G LCPY+L+R A I+ Y+YLLD
Sbjct: 173 CHFYNNVEEKSLEQELAAPILDIEDLVKSGNRHKLCPYYLSRNLKQQADIIFMPYNYLLD 232
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 233 AKSRRAHSIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDVASGLDVIDQVLEEQTKVA 291
Query: 154 KEAD 157
++ D
Sbjct: 292 QQGD 295
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G LCPY+L+R A I+ Y+YLLD
Sbjct: 173 CHFYNNVEEKSLEQELAAPILDIEDLVKSGNRHKLCPYYLSRNLKQQADIIFMPYNYLLD 232
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 233 AKSRRAHSIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDVASGLDVIDQVLEEQTKVA 291
Query: 809 KEAD 812
++ D
Sbjct: 292 QQGD 295
Score = 47.4 bits (111), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + + G+ L +IA VVP G++ FF
Sbjct: 511 QIWVGVVPKGPDGA--------QLSSAFDKRFSDTCLASLGKALGNIARVVPHGLLVFFP 562
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W Q L+ K +F+E
Sbjct: 563 SYPVMEKSLEFWRAQDFARKLEALKPVFVE 592
>gi|407849947|gb|EKG04513.1| helicase, putative [Trypanosoma cruzi]
Length = 951
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 47/191 (24%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
+ I D+ V FP+ YP Q YM + AL+ + + LLE P+GTGKT LL +A++
Sbjct: 4 ISIADVGVSFPFN-PYPAQVEYMRAVIDALNGRCNALLESPTGTGKTLCLLCSALAWLEK 62
Query: 486 H-----------PLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSR 534
T+++YCSRT ++ +V+ EL R ++ + +M+ +L SR
Sbjct: 63 RRGMTQQRYQIEGAGRTRVIYCSRTHAQLRQVIRELKR-----TRYGDIFSMS--LLGSR 115
Query: 535 KNLCIHSE----------------------------FETRDDISVIRNYGQLLVDIACVV 566
+++C++S+ F+ R+D + G+ + D+ +V
Sbjct: 116 EHMCVNSQVLRLPTAQAQQSMCNTLREEKKCRFYRGFQARNDHNTAVKDGKWVHDMEDLV 175
Query: 567 PDGVVCFFTSY 577
DG C + Y
Sbjct: 176 SDGRKCGYCPY 186
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 35 CDFYEKFDAVG-REAPLAPG--VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 91
C FY F A + G V+ + L GR+ G CPY+ R+ A IV Y+Y
Sbjct: 146 CRFYRGFQARNDHNTAVKDGKWVHDMEDLVSDGRKCGYCPYYSEREEAKEADIVFLPYNY 205
Query: 92 LLDPKIANVVSKELARSSVVVFDEAHNIDNV 122
+ D I + L + S+++ DEAHN+ +V
Sbjct: 206 VFDLSIRKQLPFNL-KGSILIVDEAHNLPSV 235
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 690 CDFYEKFDAVG-REAPLAPG--VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
C FY F A + G V+ + L GR+ G CPY+ R+ A IV Y+Y
Sbjct: 146 CRFYRGFQARNDHNTAVKDGKWVHDMEDLVSDGRKCGYCPYYSEREEAKEADIVFLPYNY 205
Query: 747 LLDPKIANVVSKELARSSVVVFDEAHNIDNV 777
+ D I + L + S+++ DEAHN+ +V
Sbjct: 206 VFDLSIRKQLPFNL-KGSILIVDEAHNLPSV 235
>gi|156379412|ref|XP_001631451.1| predicted protein [Nematostella vectensis]
gi|156218492|gb|EDO39388.1| predicted protein [Nematostella vectensis]
Length = 1082
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
C FY + + I L +G++ +CPY++AR+ A I+ Y+YLL
Sbjct: 176 TCHFYNNLEGNKSNPAFTTEILDIEDLVRLGQKHKVCPYYMARELKTSADIIFMPYNYLL 235
Query: 94 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
DPK + +++ S+VVFDEAHN++ VC +++S + I V ++
Sbjct: 236 DPKSRKAHNLDIS-GSIVVFDEAHNLEKVCEETVSFDLTSFDIASCVEDV 284
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
C FY + + I L +G++ +CPY++AR+ A I+ Y+YLL
Sbjct: 176 TCHFYNNLEGNKSNPAFTTEILDIEDLVRLGQKHKVCPYYMARELKTSADIIFMPYNYLL 235
Query: 749 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
DPK + +++ S+VVFDEAHN++ VC +++S + I V ++
Sbjct: 236 DPKSRKAHNLDIS-GSIVVFDEAHNLEKVCEETVSFDLTSFDIASCVEDV 284
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 9/135 (6%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q++V + PDG L S +E R + G + + A +P+G++ FF
Sbjct: 511 QMMVAVVTKAPDGAT--------LNSSYEFRSTPGYMTGLGNTIANFARTIPNGLLVFFP 562
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSS 676
SY + + W + GI L + K +F E + D ++ KI D + T +
Sbjct: 563 SYPVMNKCLEHWQNTGIWARLSQYKPMFAEPRGKGDFVQTMEDFYAKINDPSLNGATFFA 622
Query: 677 VRDRHKAGENIPVCD 691
V R K E + D
Sbjct: 623 VC-RGKVSEGLDFSD 636
>gi|55925522|ref|NP_001007320.1| probable ATP-dependent RNA helicase DDX11 [Danio rerio]
gi|55250690|gb|AAH85645.1| Zgc:92172 [Danio rerio]
Length = 890
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 570 VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWY 629
V+C S LE F+TRD ++ G++L ++ +VP GVVCFF SY Y + ++ W
Sbjct: 645 VLCAGPSGQQLEFTFQTRDSPQMMEETGRVLSNLCNIVPGGVVCFFPSYEYEKRILGHWE 704
Query: 630 DQGIIDNLQKRKLLFIETQDA------LDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKA 683
GI+ LQ +K +F E + A L S +R I G+ +L S V +
Sbjct: 705 STGILQRLQSKKKIFQEPKKASQVEQVLSEYSKCIQRCSNIGGGQTGALLFSVVGGKMSE 764
Query: 684 GENI 687
G N
Sbjct: 765 GINF 768
Score = 45.1 bits (105), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V + +L + GRE CPY+ R +I A++VV Y LL +L + +V+
Sbjct: 313 VRDVEQLIQHGRETHTCPYYSTRMSIPAAQVVVLPYQSLLHASTRKASGIKL-KDQIVII 371
Query: 114 DEAHNI 119
DEAHN+
Sbjct: 372 DEAHNL 377
Score = 45.1 bits (105), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V + +L + GRE CPY+ R +I A++VV Y LL +L + +V+
Sbjct: 313 VRDVEQLIQHGRETHTCPYYSTRMSIPAAQVVVLPYQSLLHASTRKASGIKL-KDQIVII 371
Query: 769 DEAHNI 774
DEAHN+
Sbjct: 372 DEAHNL 377
>gi|307108093|gb|EFN56334.1| hypothetical protein CHLNCDRAFT_144794 [Chlorella variabilis]
Length = 1763
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 34 VCDFYEKFDAVGREAPLAPG-VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYL 92
C +Y + R+ P A V I L +G +CPY+LAR+ A IV Y+YL
Sbjct: 453 ACKWYNGVEKFVRQNPDANAEVLDIEDLGRIGESRTVCPYYLAREMAATADIVFMPYNYL 512
Query: 93 LDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 145
LD K + +S+V++FDEAHN++ VC DS+S + + A+ + T
Sbjct: 513 LDAKTRTGLGIAW-QSAVLIFDEAHNVEQVCSDSMSFDLPAAALASAIEELGT 564
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 689 VCDFYEKFDAVGREAPLAPG-VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYL 747
C +Y + R+ P A V I L +G +CPY+LAR+ A IV Y+YL
Sbjct: 453 ACKWYNGVEKFVRQNPDANAEVLDIEDLGRIGESRTVCPYYLAREMAATADIVFMPYNYL 512
Query: 748 LDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 800
LD K + +S+V++FDEAHN++ VC DS+S + + A+ + T
Sbjct: 513 LDAKTRTGLGIAW-QSAVLIFDEAHNVEQVCSDSMSFDLPAAALASAIEELGT 564
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 569 GVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW 628
GVV S L S ++ R++ + + GQ LV+ ++PDG++ FFTSY L+S VA+W
Sbjct: 829 GVVPTGPSGHALNSSYQNRENAAYRSDLGQALVNFCRIIPDGLLVFFTSYAQLQSCVATW 888
Query: 629 ------YDQGIIDNLQKRKLLFIETQDA 650
I + + K K IE +++
Sbjct: 889 KQVPSSGGPSIWERIAKSKQPVIEPRES 916
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 488 LDVTKLLYCSRTVPEIEKVVEELA-----RLFDYYIKHNEEIN--MTGLVLSSRKNLCIH 540
+ V +L S T+ ++ EL RL + ++ E+ + G+V + ++
Sbjct: 782 MKVRSILLTSGTLSPLDSFAHELGLPFPIRLENPHVIAKEQASGVWVGVVPTGPSGHALN 841
Query: 541 SEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDI 590
S ++ R++ + + GQ LV+ ++PDG++ FFTSY L+S T +
Sbjct: 842 SSYQNRENAAYRSDLGQALVNFCRIIPDGLLVFFTSYAQLQSCVATWKQV 891
Score = 46.2 bits (108), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 433 VFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
V FP+E YP Q YM ++ +AL H LLE P+GTGKT LL +A+
Sbjct: 286 VEFPFE-AYPCQLDYMTKVIQALQEGQHALLESPTGTGKTLCLLCATLAW 334
>gi|344254979|gb|EGW11083.1| Regulator of telomere elongation helicase 1 [Cricetulus griseus]
Length = 1225
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 169 CHFYNNVEEKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNMKQQADIIFMPYNYLLD 228
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 229 AKSRKAHNIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEAINQVLE---EQA 284
Query: 154 KEADSAKLREEYA 166
+ A +L+ E++
Sbjct: 285 RLAQQGELQLEFS 297
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 169 CHFYNNVEEKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNMKQQADIIFMPYNYLLD 228
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 229 AKSRKAHNIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEAINQVLE---EQA 284
Query: 809 KEADSAKLREEYA 821
+ A +L+ E++
Sbjct: 285 RLAQQGELQLEFS 297
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 46/158 (29%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY--- 482
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWREH 62
Query: 483 --------------------------MNAHP-------LDVTKLLYCSRTVPEIEKVVEE 509
NA D+ K++Y SRT ++ +V+ E
Sbjct: 63 LRDAVSSLKIAERVQGELFASRSLSSWNAADGDSIACYTDIPKIIYASRTHSQLTQVISE 122
Query: 510 LARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
L N VL SR+ LCIH E + ++
Sbjct: 123 L---------RNTSYRPKVCVLGSREQLCIHPEVKKQE 151
Score = 47.0 bits (110), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V + PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 502 IIDRNQLWVGVIPRGPDGV--------QLSSAYDKRFSEECLSSLGKALGNIARVVPHGL 553
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W Q + ++ K LF+E ++
Sbjct: 554 LVFFPSYPVMEKSLEFWRAQDLAKRVEVLKPLFVEPRN 591
>gi|354481991|ref|XP_003503184.1| PREDICTED: LOW QUALITY PROTEIN: regulator of telomere elongation
helicase 1-like [Cricetulus griseus]
Length = 1259
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 169 CHFYNNVEEKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNMKQQADIIFMPYNYLLD 228
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 229 AKSRKAHNIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEAINQVLE---EQA 284
Query: 154 KEADSAKLREEYA 166
+ A +L+ E++
Sbjct: 285 RLAQQGELQLEFS 297
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 169 CHFYNNVEEKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNMKQQADIIFMPYNYLLD 228
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + R + + I Q LE ++
Sbjct: 229 AKSRKAHNIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEAINQVLE---EQA 284
Query: 809 KEADSAKLREEYA 821
+ A +L+ E++
Sbjct: 285 RLAQQGELQLEFS 297
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 46/158 (29%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY--- 482
++++ + V FP++ YP Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 VVLNGVTVDFPFQ-PYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWREH 62
Query: 483 --------------------------MNAHP-------LDVTKLLYCSRTVPEIEKVVEE 509
NA D+ K++Y SRT ++ +V+ E
Sbjct: 63 LRDAVSSLKIAERVQGELFASRSLSSWNAADGDSIACYTDIPKIIYASRTHSQLTQVISE 122
Query: 510 LARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
L N VL SR+ LCIH E + ++
Sbjct: 123 L---------RNTSYRPKVCVLGSREQLCIHPEVKKQE 151
Score = 47.0 bits (110), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I + QL V + PDGV L S ++ R + + G+ L +IA VVP G+
Sbjct: 502 IIDRNQLWVGVIPRGPDGV--------QLSSAYDKRFSEECLSSLGKALGNIARVVPHGL 553
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
+ FF SY +E + W Q + ++ K LF+E ++
Sbjct: 554 LVFFPSYPVMEKSLEFWRAQDLAKRVEVLKPLFVEPRN 591
>gi|47204868|emb|CAF94395.1| unnamed protein product [Tetraodon nigroviridis]
Length = 529
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 89/388 (22%), Positives = 159/388 (40%), Gaps = 46/388 (11%)
Query: 35 CDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 89
C +Y +G + L + I L +G+ L C YF AR+ ++ A IV+ Y
Sbjct: 93 CHYYHGVQKMGEQYQLQRVHGLCEAWDIEDLVSLGKRLRSCSYFAARELMMDADIVLCPY 152
Query: 90 HYLLDPKIANVVSKELA---------RSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 140
+YLLDP I VS E ++V DEAHNI++ +S S +N ++ +
Sbjct: 153 NYLLDPLIRESVSLEEQLEEMMDINLSGQILVLDEAHNIEDCARESASFTLNYDSL---L 209
Query: 141 GNIQTLEGTLKEMKEADSAK-LREEYARLVEGLRDAQS-ARETDVVLANPVLPDEILQEV 198
+ LE ++ D + LR L+ ++++QS E A+ V + ++
Sbjct: 210 SSRDELESMIRNNIRPDKHEPLRAFCYSLINWIQESQSLLSERGYESASKVWSGRDMVDI 269
Query: 199 VPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIF 258
T+ F ++ + L+ R+ VV S P P + S+A+ + +
Sbjct: 270 FHNLGITSATFNILKQKLMAVLEKEERI-GVVNGREDLVQVPTQSAPLPPLSSKAFLWSW 328
Query: 259 STEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAE-RLASLLRTLEITNLTD 317
T + + DI+S++C RFC LA+ T+ + +
Sbjct: 329 ITSS------------ETAAGQTETDIASRLC------RFCQRVTLANNASTVSVRRFAE 370
Query: 318 -----FSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLY--FCCLDSSLAIKP 370
T+ + +GF ++ V + VL F CL+ ++A
Sbjct: 371 DYRVALQRSFAWTNQVPPDAPDAQGFFGRPHQRQRRSIRVKSEVLTVSFWCLNPAVAFSD 430
Query: 371 VFDRFQTVVITSGTLSPLDMYPKILNFQ 398
+ D +++V+TSGTLSP+ + L +
Sbjct: 431 LGDAVRSIVLTSGTLSPMASFSSELGVK 458
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 14/112 (12%)
Query: 690 CDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 744
C +Y +G + L + I L +G+ L C YF AR+ ++ A IV+ Y
Sbjct: 93 CHYYHGVQKMGEQYQLQRVHGLCEAWDIEDLVSLGKRLRSCSYFAARELMMDADIVLCPY 152
Query: 745 HYLLDPKIANVVSKELA---------RSSVVVFDEAHNIDNVCVDSLSVRIN 787
+YLLDP I VS E ++V DEAHNI++ +S S +N
Sbjct: 153 NYLLDPLIRESVSLEEQLEEMMDINLSGQILVLDEAHNIEDCARESASFTLN 204
>gi|303388455|ref|XP_003072462.1| Rad3/XPD ATP-dependent DNA-binding helicase [Encephalitozoon
intestinalis ATCC 50506]
gi|303301602|gb|ADM11102.1| Rad3/XPD ATP-dependent DNA-binding helicase [Encephalitozoon
intestinalis ATCC 50506]
Length = 678
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 77/141 (54%), Gaps = 9/141 (6%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C ++ D + + + ++ I +LK GR G CPY+ +R A+++ Y+YL+D
Sbjct: 152 CAYFTGKDRLAKR--VGDRIFDIEELKGEGRRCGGCPYYASRILNEDAEVIFAPYNYLID 209
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIE----KAVGNIQTLEGTL 150
+I L +SVV+ DEAHNI++VC S S+ ++ RTIE + +G I+ G L
Sbjct: 210 SRIRENTGISL-ENSVVIVDEAHNIEDVCRSSGSIELSSRTIEIIQNEILGAIRR-SGML 267
Query: 151 KEMKEADSAKLREEYARLVEG 171
E+K D L + + +L EG
Sbjct: 268 GEIK-LDFVNLMDFFRKLREG 287
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 77/141 (54%), Gaps = 9/141 (6%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C ++ D + + + ++ I +LK GR G CPY+ +R A+++ Y+YL+D
Sbjct: 152 CAYFTGKDRLAKR--VGDRIFDIEELKGEGRRCGGCPYYASRILNEDAEVIFAPYNYLID 209
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIE----KAVGNIQTLEGTL 805
+I L +SVV+ DEAHNI++VC S S+ ++ RTIE + +G I+ G L
Sbjct: 210 SRIRENTGISL-ENSVVIVDEAHNIEDVCRSSGSIELSSRTIEIIQNEILGAIRR-SGML 267
Query: 806 KEMKEADSAKLREEYARLVEG 826
E+K D L + + +L EG
Sbjct: 268 GEIK-LDFVNLMDFFRKLREG 287
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 32/136 (23%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY--- 482
+ I +P+ P+E YP Q M +L L L+E P+GTGK+ S++ ++ Y
Sbjct: 4 IKISGVPIEMPFE-PYPAQIVTMTKLISCLTTGTSGLVESPTGTGKSLSIICAVLGYSEY 62
Query: 483 --MNAHPLDVT-----------------KLLYCSRTVPEIEKVVEELARLFDYYIKHNEE 523
A ++V K++ CSRT ++++++E+L + +
Sbjct: 63 LKRGAKSINVKRREGGSLKGEEAKEEKLKIIICSRTHKQLDQLIEQLRK-----THYRPR 117
Query: 524 INMTGLVLSSRKNLCI 539
I+ +L+SR CI
Sbjct: 118 IS----ILASRSQYCI 129
>gi|340052773|emb|CCC47058.1| putative helicase [Trypanosoma vivax Y486]
Length = 968
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 21/129 (16%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM-- 483
++I + + FP++ YP Q YM + ALD + LLE P+GTGKT LL ++A++
Sbjct: 4 IVIRGVEISFPFD-PYPAQVEYMQAVMDALDNAANALLESPTGTGKTLCLLCAVLAWLEK 62
Query: 484 ----------NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSS 533
P VT+++YCSRT ++ V+ EL + ++ +M ++ S
Sbjct: 63 RQSISFSGGATGSP-GVTRVVYCSRTHTQLSHVIRELKK-----TSYSSAFSMA--IMGS 114
Query: 534 RKNLCIHSE 542
R+++C+HS+
Sbjct: 115 REHMCVHSQ 123
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 35 CDFYEKFDA-VGREAPLA--PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 91
C FY F + + R L+ V+ + L G + G CPY+ R+ + I+ Y+Y
Sbjct: 146 CHFYRGFQSRLARNEMLSKESCVHDMEDLFAEGYKCGFCPYYWERELAKESSIIFLPYNY 205
Query: 92 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLK 151
+ D + + +L + V++ DEAHN+ +V S V + + A+ + +
Sbjct: 206 IFDSTLRRQLPFDL-KDCVLIVDEAHNLPSVLGSSFCVNLQPLELANAIHDCSRAIAARR 264
Query: 152 EMKEA 156
MK++
Sbjct: 265 AMKDS 269
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 690 CDFYEKFDA-VGREAPLA--PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
C FY F + + R L+ V+ + L G + G CPY+ R+ + I+ Y+Y
Sbjct: 146 CHFYRGFQSRLARNEMLSKESCVHDMEDLFAEGYKCGFCPYYWERELAKESSIIFLPYNY 205
Query: 747 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLK 806
+ D + + +L + V++ DEAHN+ +V S V + + A+ + +
Sbjct: 206 IFDSTLRRQLPFDL-KDCVLIVDEAHNLPSVLGSSFCVNLQPLELANAIHDCSRAIAARR 264
Query: 807 EMKEA 811
MK++
Sbjct: 265 AMKDS 269
>gi|345789824|ref|XP_543101.3| PREDICTED: regulator of telomere elongation helicase 1 [Canis lupus
familiaris]
Length = 1689
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + LCPY+L+R A I+ Y+YLLD
Sbjct: 170 CHFYNNVEEKSLEQELATPILDIEDLVKSGNKHKLCPYYLSRNLKQQADIIFMPYNYLLD 229
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEM- 153
K S +L + +VV+FDEAHN++ +C ++ S + T + L+ L+E
Sbjct: 230 TKSRRAHSIDL-KGTVVIFDEAHNVEKMCEETASFDL---TPHDVASGLDVLDQVLEEQT 285
Query: 154 KEADSAKLREEYA 166
K A +LR E++
Sbjct: 286 KAAQQDELRSEFS 298
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + LCPY+L+R A I+ Y+YLLD
Sbjct: 170 CHFYNNVEEKSLEQELATPILDIEDLVKSGNKHKLCPYYLSRNLKQQADIIFMPYNYLLD 229
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEM- 808
K S +L + +VV+FDEAHN++ +C ++ S + T + L+ L+E
Sbjct: 230 TKSRRAHSIDL-KGTVVIFDEAHNVEKMCEETASFDL---TPHDVASGLDVLDQVLEEQT 285
Query: 809 KEADSAKLREEYA 821
K A +LR E++
Sbjct: 286 KAAQQDELRSEFS 298
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V I PDG L S F+ R + + + G+ L +IA VVP G++ FF
Sbjct: 508 QIWVGIVSRGPDGA--------QLSSAFDKRFSEACLSSLGKALGNIARVVPHGLLVFFP 559
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
SY LE + W L+ K +F+E ++
Sbjct: 560 SYPVLERSLQFWRTHDSAGKLEALKPVFVEPRN 592
>gi|195049134|ref|XP_001992658.1| GH24089 [Drosophila grimshawi]
gi|229891623|sp|B4JNS2.1|RTEL1_DROGR RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|193893499|gb|EDV92365.1| GH24089 [Drosophila grimshawi]
Length = 986
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 51 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 110
P + I L ++G+ L +CPYF +++ + A I Y+YLLDPK EL+ +++
Sbjct: 192 GPSIMDIEDLVKVGQRLKMCPYFASKELVNSADITFMPYNYLLDPKARKANKIELS-NAI 250
Query: 111 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
V+ DE HNI+ +C +S SV+I + A+ ++
Sbjct: 251 VILDEGHNIEKICEESASVQIRSSDVAIAIEDV 283
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 706 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 765
P + I L ++G+ L +CPYF +++ + A I Y+YLLDPK EL+ +++
Sbjct: 192 GPSIMDIEDLVKVGQRLKMCPYFASKELVNSADITFMPYNYLLDPKARKANKIELS-NAI 250
Query: 766 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
V+ DE HNI+ +C +S SV+I + A+ ++
Sbjct: 251 VILDEGHNIEKICEESASVQIRSSDVAIAIEDV 283
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 552 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
I N Q+ V I PD L S ++ RD+ I + GQ +++++ +VPDG+
Sbjct: 507 IVNEAQVYVKIIGTGPD--------REQLISNYKNRDNPKYISSLGQTILNVSRIVPDGL 558
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
+ FF SY L V +W G+ ++ RK +F+E
Sbjct: 559 LVFFPSYPMLNQCVDAWQASGLWADISSRKPIFLE 593
>gi|71660707|ref|XP_822069.1| helicase [Trypanosoma cruzi strain CL Brener]
gi|70887462|gb|EAO00218.1| helicase, putative [Trypanosoma cruzi]
Length = 951
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 47/189 (24%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAH- 486
I D+ V FP+ YP Q YM + AL + + LLE P+GTGKT LL +A++
Sbjct: 6 IGDVGVSFPFN-PYPAQVEYMRAVIDALKGRCNALLESPTGTGKTLCLLCSALAWLEKRN 64
Query: 487 ----------PLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKN 536
T+++YCSRT ++ +V+ EL R ++ + +M+ +L SR++
Sbjct: 65 GMTQQRYQIEGAGRTRVIYCSRTHAQLSQVIRELKR-----TRYGDIFSMS--LLGSREH 117
Query: 537 LCIHSE----------------------------FETRDDISVIRNYGQLLVDIACVVPD 568
+C++S+ F+ R+D + G+ + D+ +V D
Sbjct: 118 MCVNSQVLRLPTAQAQQSMCNTLREEKNCRFYRGFQARNDHNTAVKDGKWVHDMEDLVSD 177
Query: 569 GVVCFFTSY 577
G C + Y
Sbjct: 178 GRKCGYCPY 186
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 35 CDFYEKFDAVG-REAPLAPG--VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 91
C FY F A + G V+ + L GR+ G CPY+ R+ A IV Y+Y
Sbjct: 146 CRFYRGFQARNDHNTAVKDGKWVHDMEDLVSDGRKCGYCPYYSEREEAKEADIVFLPYNY 205
Query: 92 LLDPKIANVVSKELARSSVVVFDEAHNIDNV 122
+ D I + L + S+++ DEAHN+ +V
Sbjct: 206 VFDLSIRKQLPFNL-KGSILIVDEAHNLPSV 235
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 690 CDFYEKFDAVG-REAPLAPG--VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
C FY F A + G V+ + L GR+ G CPY+ R+ A IV Y+Y
Sbjct: 146 CRFYRGFQARNDHNTAVKDGKWVHDMEDLVSDGRKCGYCPYYSEREEAKEADIVFLPYNY 205
Query: 747 LLDPKIANVVSKELARSSVVVFDEAHNIDNV 777
+ D I + L + S+++ DEAHN+ +V
Sbjct: 206 VFDLSIRKQLPFNL-KGSILIVDEAHNLPSV 235
>gi|320165278|gb|EFW42177.1| DNA repair helicase [Capsaspora owczarzaki ATCC 30864]
Length = 1329
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 7/163 (4%)
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK---- 695
R++ ++ D+ D ++ R V +S +RDR C EK
Sbjct: 444 RRISYLTDSDSPDLMTILASRSKTCVHPLVNSGKPDEIRDRCNEAVQARRCSHREKTTTM 503
Query: 696 FDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANV 755
D+ R++ V+ I L + G CPYF R+ A IV+ Y+Y+LDP I
Sbjct: 504 VDSFRRKSEYI--VWEIEDLISFSDKSGGCPYFATREMAGFANIVLCPYNYVLDPVIRKN 561
Query: 756 VSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
+ +L+ +++V+ DEAHNI++VC DSLS+ +++ ++ V ++
Sbjct: 562 MEIDLS-NNIVIVDEAHNIEDVCRDSLSMCVSKSRLDYLVSSM 603
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V+ I L + G CPYF R+ A IV+ Y+Y+LDP I + +L+ +++V+
Sbjct: 515 VWEIEDLISFSDKSGGCPYFATREMAGFANIVLCPYNYVLDPVIRKNMEIDLS-NNIVIV 573
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
DEAHNI++VC DSLS+ +++ ++ V ++
Sbjct: 574 DEAHNIEDVCRDSLSMCVSKSRLDYLVSSM 603
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAH 486
MI + V FP+ YP Q M ++ +AL++K + LLE P+GTGK+ +LL +A+ ++
Sbjct: 106 MIGGVSVRFPFP-PYPTQLTMMQKVIQALESKQNALLESPTGTGKSLTLLCSALAWRRSY 164
>gi|195448955|ref|XP_002071885.1| GK24923 [Drosophila willistoni]
gi|229891630|sp|B4NDG5.1|RTEL1_DROWI RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|194167970|gb|EDW82871.1| GK24923 [Drosophila willistoni]
Length = 998
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 51 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 110
P + I L ++G++L +CPYF +++ + A I Y+YLLDP EL+ +++
Sbjct: 192 GPSIMDIEDLVKVGQKLKMCPYFASKELVNDADITFMPYNYLLDPMARKANKIELS-NTI 250
Query: 111 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
V+ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 251 VILDEAHNIEKICEESASVQIKSSDVAVAIEDV 283
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 706 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 765
P + I L ++G++L +CPYF +++ + A I Y+YLLDP EL+ +++
Sbjct: 192 GPSIMDIEDLVKVGQKLKMCPYFASKELVNDADITFMPYNYLLDPMARKANKIELS-NTI 250
Query: 766 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
V+ DEAHNI+ +C +S SV+I + A+ ++
Sbjct: 251 VILDEAHNIEKICEESASVQIKSSDVAVAIEDV 283
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S F+ RD+ I + GQ +++++ +VPDG++ FF SY L V +W G+ ++
Sbjct: 532 LISNFKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNKCVDAWQTSGLWADIAA 591
Query: 640 RKLLFIE 646
+K +F+E
Sbjct: 592 KKPIFLE 598
>gi|402881970|ref|XP_003904529.1| PREDICTED: regulator of telomere elongation helicase 1 [Papio
anubis]
Length = 1301
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + G E LA + I L + G + +CPY+L+R A IV Y+YLLD
Sbjct: 172 CHFYNNVEEKGLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIVFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 128
K S +L + +VV+FDEAHN++ +C +S S
Sbjct: 232 AKSRRAHSIDL-KGTVVIFDEAHNVEKMCEESAS 264
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + G E LA + I L + G + +CPY+L+R A IV Y+YLLD
Sbjct: 172 CHFYNNVEEKGLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIVFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 783
K S +L + +VV+FDEAHN++ +C +S S
Sbjct: 232 AKSRRAHSIDL-KGTVVIFDEAHNVEKMCEESAS 264
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 510 QIWVGVVPRGPDGA--------QLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + + ++ K LF+E
Sbjct: 562 SYPVMEKSLEFWRARDLARKMEALKPLFVE 591
>gi|123486053|ref|XP_001324631.1| helicase [Trichomonas vaginalis G3]
gi|121907517|gb|EAY12408.1| helicase, putative [Trichomonas vaginalis G3]
Length = 880
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 55 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 114
Y I L ++ RE CPYF+ R A+ ++ Y+Y+LD +I + ELA +SVV+FD
Sbjct: 178 YDIENLIDVCREEVKCPYFVTRNLAKRAEFILAPYNYILDGRIRGTMKIELA-NSVVIFD 236
Query: 115 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 146
E HNI+ +C D+ S+ ++ + + G I TL
Sbjct: 237 EGHNIEGICRDAASLSLDYKEVSYIQGYIATL 268
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 710 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 769
Y I L ++ RE CPYF+ R A+ ++ Y+Y+LD +I + ELA +SVV+FD
Sbjct: 178 YDIENLIDVCREEVKCPYFVTRNLAKRAEFILAPYNYILDGRIRGTMKIELA-NSVVIFD 236
Query: 770 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 801
E HNI+ +C D+ S+ ++ + + G I TL
Sbjct: 237 EGHNIEGICRDAASLSLDYKEVSYIQGYIATL 268
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 65/155 (41%), Gaps = 41/155 (26%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY- 482
MG+ +D FP+ YP Q A M + AL + LLE P+GTGKT SLL+ + Y
Sbjct: 1 MGIDVD-----FPFSTPYPAQKAIMAKTMVALKQSENALLESPTGTGKTLSLLASSLGYQ 55
Query: 483 ---MNAHP------------------LDVT-------KLLYCSRTVPEIEKVVEELARLF 514
+ P LD K+ Y SRT ++ +VV EL R
Sbjct: 56 TWLQSQKPEPPKKIDPAALYGEKYTELDPETEEEPQLKVYYTSRTHNQLSQVVSELKRKL 115
Query: 515 DYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDI 549
Y +L+SR+ LCI+ + DI
Sbjct: 116 PTY-------RPKMAILASRQQLCINDNVRNKPDI 143
>gi|297259357|ref|XP_001113864.2| PREDICTED: regulator of telomere elongation helicase 1-like [Macaca
mulatta]
Length = 1347
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + G E LA + I L + G + +CPY+L+R A IV Y+YLLD
Sbjct: 172 CHFYNNVEEKGLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIVFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 128
K S +L + +VV+FDEAHN++ +C +S S
Sbjct: 232 AKSRRAHSIDL-KGTVVIFDEAHNVEKMCEESAS 264
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + G E LA + I L + G + +CPY+L+R A IV Y+YLLD
Sbjct: 172 CHFYNNVEEKGLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIVFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 783
K S +L + +VV+FDEAHN++ +C +S S
Sbjct: 232 AKSRRAHSIDL-KGTVVIFDEAHNVEKMCEESAS 264
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 556 QIWVGVVPRGPDGA--------QLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFP 607
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + + ++ K LF+E
Sbjct: 608 SYPVMEKSLEFWRARDLARKMEALKPLFVE 637
>gi|452822263|gb|EME29284.1| putative DNA helicase required for mitotic chromosome segregation
CHL1 [Galdieria sulphuraria]
Length = 984
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V+ I L +G+ LCPYF +++ + A+++ Y YLLDP + N + EL+ +S+V+
Sbjct: 250 VWDIEDLVRIGKRHNLCPYFSSQELMKTAELIFCPYSYLLDPVVRNAMQVELS-NSIVIL 308
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 147
DEAHNI++VC ++ S + +E+ ++TL+
Sbjct: 309 DEAHNIEDVCREAASCEVFIEELEQVRTELETLD 342
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V+ I L +G+ LCPYF +++ + A+++ Y YLLDP + N + EL+ +S+V+
Sbjct: 250 VWDIEDLVRIGKRHNLCPYFSSQELMKTAELIFCPYSYLLDPVVRNAMQVELS-NSIVIL 308
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
DEAHNI++VC ++ S + +E+ ++TL+
Sbjct: 309 DEAHNIEDVCREAASCEVFIEELEQVRTELETLD 342
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%)
Query: 581 ESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKR 640
+S F I+ GQ +++ V+PDGV+CFF SY LESVV W G L+
Sbjct: 561 DSTFAASSSIAYHDCLGQSILEYCRVIPDGVICFFPSYRLLESVVRRWRQSGYWKELESC 620
Query: 641 KLLFIE 646
K +FIE
Sbjct: 621 KQVFIE 626
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + + FPYE YP Q+ +M ++ +A + + LLE P+GTGK+ +LL ++A+
Sbjct: 1 MPFQVYGTEIEFPYE-PYPVQFVFMEKILRACENSQNALLESPTGTGKSLALLCAVLAWQ 59
>gi|441670170|ref|XP_004092177.1| PREDICTED: probable ATP-dependent RNA helicase DDX11 [Nomascus
leucogenys]
Length = 970
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 644 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEAGRILCNLCGVVPGGV 703
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++D L RK +F E + A
Sbjct: 704 VCFFPSYEYLRQVHAHWEKGGLLDRLAARKKIFQEPKSA 742
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALA-DVKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTL 146
Y LL L + VV+ DEAHN+ + SV ++ + +A +Q +
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHSQLLQYM 426
Query: 147 EGTLKEMKEADSAKLRE 163
E K +K + L++
Sbjct: 427 ERYGKRLKAKNLMYLKQ 443
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALA-DVKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTL 801
Y LL L + VV+ DEAHN+ + SV ++ + +A +Q +
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHSQLLQYM 426
Query: 802 EGTLKEMKEADSAKLRE 818
E K +K + L++
Sbjct: 427 ERYGKRLKAKNLMYLKQ 443
>gi|441639260|ref|XP_004090200.1| PREDICTED: LOW QUALITY PROTEIN: regulator of telomere elongation
helicase 1 [Nomascus leucogenys]
Length = 1342
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + G E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 196 CHFYNNVEEKGLEQELASPILDIEDLVKNGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 255
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE ++
Sbjct: 256 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLE---EQT 311
Query: 154 KEADSAKLREEYA 166
K A K E++
Sbjct: 312 KMAQQGKPHPEFS 324
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + G E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 196 CHFYNNVEEKGLEQELASPILDIEDLVKNGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 255
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE ++
Sbjct: 256 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLE---EQT 311
Query: 809 KEADSAKLREEYA 821
K A K E++
Sbjct: 312 KMAQQGKPHPEFS 324
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 534 QIWVGVVPRGPDGA--------QLSSAFDRRFSEECLSSLGKALGNIARVVPCGLLIFFP 585
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + + ++ K LF+E
Sbjct: 586 SYPVMEKSLEFWRARDLARKMEALKPLFVE 615
>gi|332232623|ref|XP_003265503.1| PREDICTED: probable ATP-dependent RNA helicase DDX11 isoform 4
[Nomascus leucogenys]
Length = 880
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 618 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEAGRILCNLCGVVPGGV 677
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++D L RK +F E + A
Sbjct: 678 VCFFPSYEYLRQVHAHWEKGGLLDRLAARKKIFQEPKSA 716
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 284 EKQAACPFY-NHEQMGLLRDEALA-DVKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 341
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 132
Y LL L + VV+ DEAHN+ + SV ++
Sbjct: 342 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVS 385
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 284 EKQAACPFY-NHEQMGLLRDEALA-DVKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 341
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 787
Y LL L + VV+ DEAHN+ + SV ++
Sbjct: 342 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVS 385
>gi|332232617|ref|XP_003265500.1| PREDICTED: probable ATP-dependent RNA helicase DDX11 isoform 1
[Nomascus leucogenys]
Length = 906
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 644 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEAGRILCNLCGVVPGGV 703
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++D L RK +F E + A
Sbjct: 704 VCFFPSYEYLRQVHAHWEKGGLLDRLAARKKIFQEPKSA 742
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALA-DVKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 132
Y LL L + VV+ DEAHN+ + SV ++
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVS 411
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALA-DVKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 787
Y LL L + VV+ DEAHN+ + SV ++
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVS 411
>gi|322792265|gb|EFZ16249.1| hypothetical protein SINV_00648 [Solenopsis invicta]
Length = 599
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 12/163 (7%)
Query: 654 RSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI------PVCDFYEKFDAVGREAPL-- 705
R+ K + I+ R H+ + R+++ + C +Y + ++A +
Sbjct: 27 RTAYKHKRMTILSSRDHTCIQQTNRNKNDLCNELLDPHKNKTCPYYNEHSK--KKASIFG 84
Query: 706 -APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 764
P + I L +G +G CPYF AR + A I+ Y+Y+LDP I + L R
Sbjct: 85 SMPTPWDIEDLVSLGNSIGACPYFGARSLMTKADIIFCPYNYILDPAIRESMQIRL-RGD 143
Query: 765 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE 807
+V+ DEAHNI+++C ++ +V + I A+ + L ++
Sbjct: 144 IVILDEAHNIEDICREAANVILRDDEINTAIMDCHHLSAVYRD 186
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 52 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 111
P + I L +G +G CPYF AR + A I+ Y+Y+LDP I + L R +V
Sbjct: 87 PTPWDIEDLVSLGNSIGACPYFGARSLMTKADIIFCPYNYILDPAIRESMQIRL-RGDIV 145
Query: 112 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE 152
+ DEAHNI+++C ++ +V + I A+ + L ++
Sbjct: 146 ILDEAHNIEDICREAANVILRDDEINTAIMDCHHLSAVYRD 186
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKL 642
V+E + + N G L++ + VP GV+CFF+SY + ++ W + + D L K
Sbjct: 369 VYEEVNKWTFQDNLGNLVIQVCDAVPYGVLCFFSSYHVMNTICNRWKENKMWDKLSTLKT 428
Query: 643 LFIETQDALDSRSVSKE 659
+F+E +D ++ V +E
Sbjct: 429 IFMEPKDHRENHQVMEE 445
>gi|241623164|ref|XP_002407529.1| CHL1 protein, putative [Ixodes scapularis]
gi|215501004|gb|EEC10498.1| CHL1 protein, putative [Ixodes scapularis]
Length = 429
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 559 LVDIAC--VVPDGVVCFFT-----SYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
++ AC VVP +C S LE ++ R D+ IR G LL+++A VVP GV
Sbjct: 173 ILHFACGHVVPKSNLCALALSQGPSGKTLEFTYQNRADVETIRELGNLLINVARVVPGGV 232
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
VCFF SY Y + V W G+++ L RK +F E
Sbjct: 233 VCFFPSYEYEKVVSEKWKSSGLLEKLAARKPIFRE 267
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 525 NMTGLVLS-SRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
N+ L LS + ++ R D+ IR G LL+++A VVP GVVCFF SY Y + V
Sbjct: 186 NLCALALSQGPSGKTLEFTYQNRADVETIRELGNLLINVARVVPGGVVCFFPSYEYEKVV 245
Query: 584 FE 585
E
Sbjct: 246 SE 247
>gi|449269835|gb|EMC80576.1| Fanconi anemia group J protein like protein [Columba livia]
Length = 1261
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 14/174 (8%)
Query: 15 HSLTSSSVRDRHK------AGENIPVCDFYEKFDAVGREAPLAPG-----VYSITKLKEM 63
H + S+S +R++ G++ C +Y V L + I L +
Sbjct: 297 HPVVSNSGSNRNEMCVELLEGKHGKSCLYYHGVHKVSEHHGLQSAHNMSQAWDIEDLVHL 356
Query: 64 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 123
G++L CPYF AR+ ++ A IV Y+YLLDP+I + L + VV+ DEAHNI++
Sbjct: 357 GKKLRACPYFAARELMVGADIVFCPYNYLLDPQIRESMDINL-KGHVVILDEAHNIEDSA 415
Query: 124 VDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS 177
+S+S + + A + + +++ D LR L LR++ S
Sbjct: 416 RESVSYGVTENQLRAAQEELDFM--VNNNIRQMDHGPLRAVCCSLTNWLRESSS 467
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 14/174 (8%)
Query: 670 HSLTSSSVRDRHK------AGENIPVCDFYEKFDAVGREAPLAPG-----VYSITKLKEM 718
H + S+S +R++ G++ C +Y V L + I L +
Sbjct: 297 HPVVSNSGSNRNEMCVELLEGKHGKSCLYYHGVHKVSEHHGLQSAHNMSQAWDIEDLVHL 356
Query: 719 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 778
G++L CPYF AR+ ++ A IV Y+YLLDP+I + L + VV+ DEAHNI++
Sbjct: 357 GKKLRACPYFAARELMVGADIVFCPYNYLLDPQIRESMDINL-KGHVVILDEAHNIEDSA 415
Query: 779 VDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS 832
+S+S + + A + + +++ D LR L LR++ S
Sbjct: 416 RESVSYGVTENQLRAAQEELDFM--VNNNIRQMDHGPLRAVCCSLTNWLRESSS 467
Score = 46.2 bits (108), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
I + + FP + YP Q A M + K L+ + HCLLE P+G+GK+ +LL +++ +
Sbjct: 10 IGGVKIRFPCK-AYPSQLAMMNAIVKGLNNRQHCLLESPTGSGKSLALLCSALSWQQS 66
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 28/121 (23%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKL 642
FE +D++ G LL+ + V G++CF SY L+ + W G+ NL+ K
Sbjct: 682 TFEFQDEV------GALLLSVCQTVGQGILCFLPSYKLLDKLKDRWMHTGLWRNLELVKT 735
Query: 643 LFIETQDAL------------DSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVC 690
+ E Q D+ ERDG ++ C R K E + C
Sbjct: 736 VIAEPQGGAKSDFDELLKIYYDAIKCKGERDGALLIAVC----------RGKVSEGLDFC 785
Query: 691 D 691
D
Sbjct: 786 D 786
>gi|407036107|gb|EKE38006.1| DNA repair helicase, putative [Entamoeba nuttalli P19]
Length = 467
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 52/76 (68%)
Query: 578 LYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNL 637
L L S F R D ++ +YG+L+V+++ VPDGV+CFF SY Y+ ++ W + I +++
Sbjct: 210 LILSSQFFYRADRLILHSYGKLIVELSKTVPDGVLCFFPSYAYMNICISYWNEMKIFESI 269
Query: 638 QKRKLLFIETQDALDS 653
+ KL+FIE+++A ++
Sbjct: 270 AQNKLIFIESKNAYET 285
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 13/144 (9%)
Query: 271 QQVVQESPATFLKDISSKVC----IERKPLRFCAERLASLLRTL--EITNLTD------- 317
QQ ++E + +KDI + +C + + ++F RL L++TL E D
Sbjct: 20 QQRIKEQHSIQVKDIVTGLCDSSVLTPEIIKFIPNRLHLLIQTLGDEYGGRQDVKGDSFY 79
Query: 318 FSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQT 377
+ +L ++ A L+ S +GF+ + + + VL C+D++ AI+P+ +RF +
Sbjct: 80 YDALYLVADFAALLCSSQEGFSYVPDVVKIDKDDYYHSVLNLVCVDAANAIQPILNRFHS 139
Query: 378 VVITSGTLSPLDMYPKILNFQPVI 401
+V TSGTLSPL Y IL + V+
Sbjct: 140 IVFTSGTLSPLKTYINILGLKNVV 163
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 57/87 (65%), Gaps = 6/87 (6%)
Query: 850 LQGKTDYGIMIFADKRFARSDK--RSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMA 907
L+GK DY ++I+ADKR+ +D+ ++ +P+WI + + T+LS ++++ L+K +L +M+
Sbjct: 376 LRGKNDYTVVIYADKRYKLNDRNVKASMPQWILDAIQKRYTDLSADQSIVLAKEFLMKMS 435
Query: 908 QPFTR----EDMLGVALLSLDQLLEKE 930
F E+M+G L +LD + +++
Sbjct: 436 YSFDTQFPIEEMIGKTLWTLDNIRKEQ 462
>gi|345490538|ref|XP_001606129.2| PREDICTED: regulator of telomere elongation helicase 1 homolog
[Nasonia vitripennis]
Length = 1111
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C +Y + + + + I L + G++L CPYFL+++ +A I+ Y+YLLD
Sbjct: 181 CFYYNNVELRKDDPTIKDNILDIEDLVKTGQKLKCCPYFLSKELKQNADIIFMPYNYLLD 240
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTI 136
PK EL +++VV+ DEAHN++ +C D+ S++I+ I
Sbjct: 241 PKTRKNQGIEL-QNNVVLLDEAHNVEKMCEDAASLQISSTDI 281
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C +Y + + + + I L + G++L CPYFL+++ +A I+ Y+YLLD
Sbjct: 181 CFYYNNVELRKDDPTIKDNILDIEDLVKTGQKLKCCPYFLSKELKQNADIIFMPYNYLLD 240
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTI 791
PK EL +++VV+ DEAHN++ +C D+ S++I+ I
Sbjct: 241 PKTRKNQGIEL-QNNVVLLDEAHNVEKMCEDAASLQISSTDI 281
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S + TR+D I + G+ + ++C++P G++ FF SY ++ W G ++
Sbjct: 527 LNSSYNTRNDPKYIASLGETIKILSCILPHGMLIFFPSYPIMKKCQEEWQKMGKWSQIEA 586
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVD 666
K +F+E Q +V E KI D
Sbjct: 587 SKPIFVEPQSKEGFNNVMTEYYKKIHD 613
Score = 40.8 bits (94), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVV 566
+E A+L + +I N++I G++ + ++S + TR+D I + G+ + ++C++
Sbjct: 496 IEIGAQLENPHIVSNKQI-CVGIISNGYDGCSLNSSYNTRNDPKYIASLGETIKILSCIL 554
Query: 567 PDGVVCFFTSY 577
P G++ FF SY
Sbjct: 555 PHGMLIFFPSY 565
>gi|74271901|ref|NP_001028230.1| Fanconi anemia group J protein homolog [Gallus gallus]
gi|78099252|sp|Q3YK19.1|FANCJ_CHICK RecName: Full=Fanconi anemia group J protein homolog; Short=Protein
FACJ; AltName: Full=ATP-dependent RNA helicase BRIP1
gi|72199300|gb|AAZ66861.1| BRIP1 [Gallus gallus]
Length = 1252
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 14/174 (8%)
Query: 15 HSLTSSSVRDRHK------AGENIPVCDFYEKFDAVGREAPLAPG-----VYSITKLKEM 63
H + SSS +R++ G++ C +Y + L + I L +
Sbjct: 294 HPVVSSSNSNRNELCVELLEGKHGKSCLYYHGVHKLSEHYALQSAHNTYQAWDIEDLVSL 353
Query: 64 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 123
G++L CPYF AR+ ++ A IV Y+YLLDP+I + L + VV+ DEAHNI++
Sbjct: 354 GKKLRACPYFAARELMVGADIVFCPYNYLLDPQIRESMEINL-KGQVVILDEAHNIEDSA 412
Query: 124 VDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS 177
+++S + + A + + +++ D +LR L LR++ S
Sbjct: 413 REAVSYSVTESQLNAAREELDFMVNN--NIRQKDHEQLRAMCCSLTNWLRESSS 464
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 14/174 (8%)
Query: 670 HSLTSSSVRDRHK------AGENIPVCDFYEKFDAVGREAPLAPG-----VYSITKLKEM 718
H + SSS +R++ G++ C +Y + L + I L +
Sbjct: 294 HPVVSSSNSNRNELCVELLEGKHGKSCLYYHGVHKLSEHYALQSAHNTYQAWDIEDLVSL 353
Query: 719 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 778
G++L CPYF AR+ ++ A IV Y+YLLDP+I + L + VV+ DEAHNI++
Sbjct: 354 GKKLRACPYFAARELMVGADIVFCPYNYLLDPQIRESMEINL-KGQVVILDEAHNIEDSA 412
Query: 779 VDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS 832
+++S + + A + + +++ D +LR L LR++ S
Sbjct: 413 REAVSYSVTESQLNAAREELDFMVNN--NIRQKDHEQLRAMCCSLTNWLRESSS 464
Score = 47.0 bits (110), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
I + + FP + YP Q A M + K L+ + HCLLE P+G+GK+ +LL +++ +
Sbjct: 10 IGGVKIMFPCK-AYPSQLAMMNAIVKGLNNRQHCLLESPTGSGKSLALLCSALSWQQS 66
>gi|351703518|gb|EHB06437.1| Fanconi anemia group J protein [Heterocephalus glaber]
Length = 836
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 147/345 (42%), Gaps = 62/345 (17%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
+ I +L +GR+L CPY+ AR+ A I+ Y+YLLD +I + L + VV+
Sbjct: 4 AWDIEELVSLGRKLKACPYYTARELTEDADIIFCPYNYLLDAQIRESMDINL-KEQVVIL 62
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 173
DEAHNI++ +S S + + A + +L + +++ D LR L+ L
Sbjct: 63 DEAHNIEDCARESASYSVTEVQLRFARDELDSLVNS--NIRKKDHEPLRAVCCSLINWLE 120
Query: 174 -DAQSARETDVVLANPVLP-DEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQ 231
+ + E D + + +E+L + I TA + +L + L+ ++ V
Sbjct: 121 ANTEHLVERDYESSCKIWSGNEMLLNLYKMGITTATFPI-----LQGHLSSVLQKEEKV- 174
Query: 232 ESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCI 291
SP IF EE ++ ++ S LK + + +
Sbjct: 175 -SP----------------------IFGKEETIEV-----PIISASTQIMLKGLF--MVL 204
Query: 292 E---RKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDK 348
E R+ RF + ++ +T T+ TD S GF + P + K
Sbjct: 205 EYLFRQNSRFADDYKVAIQQTYSWTHHTDISD--------------KNGFFAV--PKNKK 248
Query: 349 APTVPNP--VLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMY 391
+ N VL F CL+ ++A + + +T+V+TSGTLSP+ +
Sbjct: 249 SSRQKNAVHVLNFWCLNPAVAFSDINGKVRTIVLTSGTLSPMKSF 293
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
+ I +L +GR+L CPY+ AR+ A I+ Y+YLLD +I + L + VV+
Sbjct: 4 AWDIEELVSLGRKLKACPYYTARELTEDADIIFCPYNYLLDAQIRESMDINL-KEQVVIL 62
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL 827
DEAHNI++ +S S + + A + +L + +++ D LR L+ L
Sbjct: 63 DEAHNIEDCARESASYSVTEVQLRFARDELDSLVNS--NIRKKDHEPLRAVCCSLINWL 119
Score = 40.8 bits (94), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 22/137 (16%)
Query: 554 NYGQLLVDIACVVPDG-VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVV 612
N Q+ V P G +C ++ + E+ FE +D++ G LL+ + V G++
Sbjct: 312 NNSQVWVGTIGSGPKGRNLC--ATFQHTET-FEFQDEV------GALLLSVCQTVSQGIL 362
Query: 613 CFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA------------LDSRSVSKER 660
CF SY LE + W G+ NL+ K + +E Q D+ E+
Sbjct: 363 CFLPSYKLLEKLKERWLYTGLWHNLELVKTVIVEPQGGEKTDFDELLQVYYDAVKYRGEK 422
Query: 661 DGKIVDGRCHSLTSSSV 677
DG ++ C S +
Sbjct: 423 DGALLVAVCRGKVSEGL 439
>gi|313233732|emb|CBY09902.1| unnamed protein product [Oikopleura dioica]
Length = 1145
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 9/158 (5%)
Query: 8 KIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGREL 67
KI DGR T S++ K C ++ D++ E L G+ I L +
Sbjct: 133 KIADGRLQQNTCSALCKAKK-------CHWFNTLDSMNEET-LPGGILDIEDLVTWSTKR 184
Query: 68 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSL 127
C Y+L R+ A+I++ Y+YLLDP++ E+A + +++FDEAHN++ VC D+
Sbjct: 185 VSCAYYLGRRLAEKAEIILLPYNYLLDPRLRTRHKLEVA-NKILIFDEAHNVEGVCEDAA 243
Query: 128 SVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEY 165
S + I A+ + +K++ + D ++Y
Sbjct: 244 SFELTSTEIALAMEECKVCLELIKDINQMDVPDESKDY 281
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 9/158 (5%)
Query: 663 KIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGREL 722
KI DGR T S++ K C ++ D++ E L G+ I L +
Sbjct: 133 KIADGRLQQNTCSALCKAKK-------CHWFNTLDSMNEET-LPGGILDIEDLVTWSTKR 184
Query: 723 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSL 782
C Y+L R+ A+I++ Y+YLLDP++ E+A + +++FDEAHN++ VC D+
Sbjct: 185 VSCAYYLGRRLAEKAEIILLPYNYLLDPRLRTRHKLEVA-NKILIFDEAHNVEGVCEDAA 243
Query: 783 SVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEY 820
S + I A+ + +K++ + D ++Y
Sbjct: 244 SFELTSTEIALAMEECKVCLELIKDINQMDVPDESKDY 281
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY--- 482
L+ ++ V FPYE YP Q +YM + +AL + H +LE P+GTGKT LL+ ++A+
Sbjct: 4 LVYHEITVRFPYE-PYPAQDSYMSKCIEALKSGCHAILESPTGTGKTLCLLASVLAFREH 62
Query: 483 -------------MNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513
AH V K++Y SRT ++ +VV EL +L
Sbjct: 63 YFAEMKKCVQSGVAGAHMGHVPKIIYSSRTHSQLSQVVSELKKL 106
>gi|157871788|ref|XP_001684443.1| helicase-like protein [Leishmania major strain Friedlin]
gi|68127512|emb|CAJ05491.1| helicase-like protein [Leishmania major strain Friedlin]
Length = 1127
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 31 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKEM------GRELGLCPYFLARQAIIHAKI 84
++ +C+ +K+D + A P + ++ +M G +CPY+ AR + +A +
Sbjct: 279 SLGLCEMVDKYDELSCSAIAGPVGHQRGQIWDMEDLVLEGTSRHMCPYYAARDLVFYADV 338
Query: 85 VVYSYHYLLDPKIANVVSKELA--RSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN 142
+Y YLLDP I + E A ++VVVFDEAHN+ VC D+LS+ R + +
Sbjct: 339 NFCTYPYLLDPLIRHETKMEAALKNNAVVVFDEAHNVAAVCQDALSLECPRDVLALILSE 398
Query: 143 IQTL 146
+Q L
Sbjct: 399 LQPL 402
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 686 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKEM------GRELGLCPYFLARQAIIHAKI 739
++ +C+ +K+D + A P + ++ +M G +CPY+ AR + +A +
Sbjct: 279 SLGLCEMVDKYDELSCSAIAGPVGHQRGQIWDMEDLVLEGTSRHMCPYYAARDLVFYADV 338
Query: 740 VVYSYHYLLDPKIANVVSKELA--RSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN 797
+Y YLLDP I + E A ++VVVFDEAHN+ VC D+LS+ R + +
Sbjct: 339 NFCTYPYLLDPLIRHETKMEAALKNNAVVVFDEAHNVAAVCQDALSLECPRDVLALILSE 398
Query: 798 IQTL 801
+Q L
Sbjct: 399 LQPL 402
>gi|320167785|gb|EFW44684.1| DEAH helicase isoform 6 [Capsaspora owczarzaki ATCC 30864]
Length = 1319
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + ++ V I L E +CPY+L+RQ +I+ Y+YLLD
Sbjct: 213 CSFYNNLERNKMSRDISNQVLDIEGLVE------VCPYYLSRQLQNRGEIIFMPYNYLLD 266
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 809
P + LA +S+++FDEAHN++++C DS S ++ I A+ Q+ + + K
Sbjct: 267 PTARKAANLNLA-NSIIIFDEAHNLESICEDSASFQLTSLDIAMAISEAQSCHDLVSDAK 325
Query: 810 EADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQGKTDYGIMIF 861
S + + LR + ET P+ P + G T +G IF
Sbjct: 326 YIGSIEPDDLLLLKKVLLRIESAIAET------PLHPQD---GFTAHGTFIF 368
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + ++ V I L E +CPY+L+RQ +I+ Y+YLLD
Sbjct: 213 CSFYNNLERNKMSRDISNQVLDIEGLVE------VCPYYLSRQLQNRGEIIFMPYNYLLD 266
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 154
P + LA +S+++FDEAHN++++C DS S ++ I A+ Q+ + + K
Sbjct: 267 PTARKAANLNLA-NSIIIFDEAHNLESICEDSASFQLTSLDIAMAISEAQSCHDLVSDAK 325
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 451 LKKALDAKGHCLLEMPSGTGKTTSL--LSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVE 508
+ KA G + PS G+T S S A + + V ++ S T+ +
Sbjct: 447 VTKASSGWGSTVHVAPSAAGRTLSFWCFSPGFAMRDLTKIGVRSIILTSGTLSPLASFGA 506
Query: 509 ELARLFDYYIKHNEEINMT----GLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
E+ F +++ I+ + G+V + N ++S F+TR D S + + G +V+ A
Sbjct: 507 EMQLPFPITLENPHVISKSQLWCGVVSTGPSNCNLNSSFKTRSDESYLTDLGSAIVNYAR 566
Query: 565 VVPDGVVCFFTSY 577
+VPDG++ FF SY
Sbjct: 567 IVPDGLLVFFPSY 579
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 569 GVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW 628
GVV S L S F+TR D S + + G +V+ A +VPDG++ FF SY + + W
Sbjct: 530 GVVSTGPSNCNLNSSFKTRSDESYLTDLGSAIVNYARIVPDGLLVFFPSYSVMTQCINHW 589
Query: 629 YD------QGIIDNLQKRKLLFIETQD 649
+ + + D L + K IE ++
Sbjct: 590 QNRSGTSAKNVWDMLHQHKHAVIEPRE 616
>gi|407410515|gb|EKF32919.1| helicase, putative [Trypanosoma cruzi marinkellei]
Length = 951
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 47/189 (24%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA-H 486
I D+ V FP+ YP Q YM + AL+ + + LLE P+GTGKT LL ++A++ H
Sbjct: 6 IGDVGVSFPFN-PYPAQVEYMRAVIDALNGRCNALLESPTGTGKTLCLLCSVLAWLEKRH 64
Query: 487 PL----------DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKN 536
+ T+++YCSRT ++ +V+ EL R ++ + +M+ +L SR++
Sbjct: 65 GMTQQRYQMEGAGRTRVIYCSRTHAQLSQVIRELKR-----TRYGDIFSMS--LLGSREH 117
Query: 537 LCIHSE----------------------------FETRDDISVIRNYGQLLVDIACVVPD 568
+C++ + F+ R+ + G+ + D+ +V D
Sbjct: 118 MCVNPQVLRLPTAQAQQSMCNTLREEKNCRFYRGFQARNGHNTAMKDGRWVHDMEDLVSD 177
Query: 569 GVVCFFTSY 577
G C + Y
Sbjct: 178 GRKCGYCPY 186
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 35 CDFYEKFDAV-GREAPLAPG--VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 91
C FY F A G + G V+ + L GR+ G CPY+ R+ A IV Y+Y
Sbjct: 146 CRFYRGFQARNGHNTAMKDGRWVHDMEDLVSDGRKCGYCPYYSEREEAKEADIVFLPYNY 205
Query: 92 LLDPKIANVVSKELARSSVVVFDEAHNIDNV 122
+ D I + +L + S+++ DEAHN+ +V
Sbjct: 206 VFDLSIRKQLPFDL-KGSILIVDEAHNLPSV 235
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 690 CDFYEKFDAV-GREAPLAPG--VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
C FY F A G + G V+ + L GR+ G CPY+ R+ A IV Y+Y
Sbjct: 146 CRFYRGFQARNGHNTAMKDGRWVHDMEDLVSDGRKCGYCPYYSEREEAKEADIVFLPYNY 205
Query: 747 LLDPKIANVVSKELARSSVVVFDEAHNIDNV 777
+ D I + +L + S+++ DEAHN+ +V
Sbjct: 206 VFDLSIRKQLPFDL-KGSILIVDEAHNLPSV 235
>gi|325191332|emb|CCA26115.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 957
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%)
Query: 651 LDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVY 710
++SR+ + D + VD +C +L S EN C FY ++P P V+
Sbjct: 276 INSRAKQNKHDNRSVDEKCQNLLS----------EN--KCSFYRLGRESNAQSPKIPHVW 323
Query: 711 SITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDE 770
I + + + C Y+ A + A IV Y YL+ P I + V K + ++VV DE
Sbjct: 324 DIEEFISLSKRKKECAYYSALNTLPFADIVFCPYSYLIHPSIRSAV-KISVKDAIVVLDE 382
Query: 771 AHNIDNVCVDSLSVRINRRTI 791
AHN++++C S S + + T+
Sbjct: 383 AHNVEDICRSSASFEVTKDTL 403
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 79/392 (20%), Positives = 144/392 (36%), Gaps = 56/392 (14%)
Query: 4 ERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEM 63
+ D + VD +C +L S EN C FY ++P P V+ I + +
Sbjct: 284 KHDNRSVDEKCQNLLS----------EN--KCSFYRLGRESNAQSPKIPHVWDIEEFISL 331
Query: 64 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 123
+ C Y+ A + A IV Y YL+ P I + V K + ++VV DEAHN++++C
Sbjct: 332 SKRKKECAYYSALNTLPFADIVFCPYSYLIHPSIRSAV-KISVKDAIVVLDEAHNVEDIC 390
Query: 124 VDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDV 183
S S + + T+ + + + +++A+ + +++ G T V
Sbjct: 391 RSSASFEVTKDTLSICIQSFTQV------IEKANRPQAYPSLLKILTGFERWMDMVSTTV 444
Query: 184 VLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISS 243
L +E N+ + + + + QV
Sbjct: 445 KLQTTGFEEE-------SNVWSGSDAIAMFDEYAGMNQDNFSSLQV-------------- 483
Query: 244 KPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERL 303
A +++ E R + E+ + + SP L+ I+ K C +
Sbjct: 484 --ASNLVHEHERILMQEEKGTGNDEKSGSIQPNSPEVLLRPIALKTV----ETILC---V 534
Query: 304 ASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYF---- 359
AS + L DF L + + ++ DK T F
Sbjct: 535 ASFMFRDNFKYLDDFKLLFFKSRAQKWSKDIPSDDHLAMK---DKKATTNTAGWQFRLAI 591
Query: 360 CCLDSSLAIKPVFDRFQTVVITSGTLSPLDMY 391
CL ++ + ++V++TSGTL+P+D Y
Sbjct: 592 WCLSGAVVFADIAKDARSVILTSGTLTPMDSY 623
>gi|410898938|ref|XP_003962954.1| PREDICTED: regulator of telomere elongation helicase 1-like
[Takifugu rubripes]
Length = 1074
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 4/140 (2%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + + + L + + L + G + +CPY+L+R A I+ Y+YL+D
Sbjct: 170 CPFYNNTEEISTDRELTHSILDVEDLVKFGNKKRVCPYYLSRSLKQEADIIFMPYNYLVD 229
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 154
PK + EL +VV+FDEAHN++ C +S S + + A+ + L L++++
Sbjct: 230 PKSRRAHNIEL-NGAVVIFDEAHNLEKTCEESTSFDLTPYDVASAIAAVDRL--LLEQVQ 286
Query: 155 EAD-SAKLREEYARLVEGLR 173
+A + E++ GL+
Sbjct: 287 DASLGPTITEQFNADYSGLK 306
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 4/140 (2%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + + + L + + L + G + +CPY+L+R A I+ Y+YL+D
Sbjct: 170 CPFYNNTEEISTDRELTHSILDVEDLVKFGNKKRVCPYYLSRSLKQEADIIFMPYNYLVD 229
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 809
PK + EL +VV+FDEAHN++ C +S S + + A+ + L L++++
Sbjct: 230 PKSRRAHNIEL-NGAVVIFDEAHNLEKTCEESTSFDLTPYDVASAIAAVDRL--LLEQVQ 286
Query: 810 EAD-SAKLREEYARLVEGLR 828
+A + E++ GL+
Sbjct: 287 DASLGPTITEQFNADYSGLK 306
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 9/154 (5%)
Query: 542 EFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLV 601
EF + S + + Q+ V + PDGV L S F+ R + + G +
Sbjct: 485 EFPVSLENSHVIDRDQIFVSVVDRGPDGV--------QLSSAFDKRFVPENMASLGNTVA 536
Query: 602 DIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERD 661
++ VVP G++ FF+S+ +E ++ W G + + K +F+E + + V
Sbjct: 537 NLTRVVPHGLLVFFSSFPLMEKMLEFWRANGQAERIDSLKPIFVEPKGKANFTEVIDGYY 596
Query: 662 GKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK 695
K+ D + + +V R KA E + D + +
Sbjct: 597 NKVNDPQTKGGSFFAVC-RGKASEGLDFADTFGR 629
>gi|340717629|ref|XP_003397282.1| PREDICTED: Fanconi anemia group J protein homolog [Bombus
terrestris]
Length = 976
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 30 ENIPVCDFYEKFDAV------GREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
+N C FY + + G ++ ++ I L +G+ GLCPYF AR + HA
Sbjct: 388 QNHKGCPFYNESNKKIIATFRGAKSRGLDDIWDIEDLVAIGKNEGLCPYFAARSLMEHAD 447
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 129
I+ Y+Y++DP I + ++A V++ DEAHNI+++C + SV
Sbjct: 448 IIFCPYNYIVDPDIRESMQLDVA-GHVIILDEAHNIEDICREVASV 492
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 685 ENIPVCDFYEKFDAV------GREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
+N C FY + + G ++ ++ I L +G+ GLCPYF AR + HA
Sbjct: 388 QNHKGCPFYNESNKKIIATFRGAKSRGLDDIWDIEDLVAIGKNEGLCPYFAARSLMEHAD 447
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 784
I+ Y+Y++DP I + ++A V++ DEAHNI+++C + SV
Sbjct: 448 IIFCPYNYIVDPDIRESMQLDVA-GHVIILDEAHNIEDICREVASV 492
Score = 43.9 bits (102), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 597 GQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSV 656
G +L+D+ VP G++CFF+SY + + + W + I + K +FIE + D + +
Sbjct: 753 GAVLLDVCESVPHGILCFFSSYNVMHTQMQRWINNSIWTKITSVKQIFIEPRHGGDLKDI 812
Query: 657 SKE 659
E
Sbjct: 813 MYE 815
>gi|432960238|ref|XP_004086424.1| PREDICTED: regulator of telomere elongation helicase 1-like
[Oryzias latipes]
Length = 1167
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C +Y D + L + + L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CLYYNNVDERSTDKDLVNSILDVEDLVKFGNKQKVCPYYLSRSLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 154
PK + EL+ +VV+FDEAHN++ +C +S S + + A+ + L +++ K
Sbjct: 232 PKSRRAHNIELS-GAVVIFDEAHNLEKMCEESSSFDLTPYDVAAAITAVDRL--LVEQAK 288
Query: 155 EADSAKLREE 164
E + E
Sbjct: 289 ETGGGEFTAE 298
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C +Y D + L + + L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CLYYNNVDERSTDKDLVNSILDVEDLVKFGNKQKVCPYYLSRSLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 809
PK + EL+ +VV+FDEAHN++ +C +S S + + A+ + L +++ K
Sbjct: 232 PKSRRAHNIELS-GAVVIFDEAHNLEKMCEESSSFDLTPYDVAAAITAVDRL--LVEQAK 288
Query: 810 EADSAKLREE 819
E + E
Sbjct: 289 ETGGGEFTAE 298
Score = 43.9 bits (102), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDGV L S F+ R + + G + + + VVP G++ FF
Sbjct: 510 QIFVSVVDRGPDGVP--------LSSAFDRRFVPENMSSLGNTVANFSRVVPHGLLVFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSS 676
S+ +E + W G D ++ K +F+E + S S S +I+DG + ++ +
Sbjct: 562 SFPLMEKTLDFWKANGHADRIENVKPMFVEPK---GSGSFS-----EIIDGYYNKVSDPA 613
Query: 677 VRD-------RHKAGENIPVCDFYEK 695
+ R KA E + D + +
Sbjct: 614 SKGGSFFAVCRGKASEGLDFADTFSR 639
>gi|307108452|gb|EFN56692.1| hypothetical protein CHLNCDRAFT_57565 [Chlorella variabilis]
Length = 1523
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
++ I LK MGR CPY+ AR+ A+++ Y YL+DP I ++ ++ ++VF
Sbjct: 256 LHDIEDLKGMGRSNKACPYYTARKWADEAEVIFAPYSYLIDPVIRRAMAVDV-EGCMLVF 314
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 144
DEAHN+++VC ++ S ++ T+ + +G Q
Sbjct: 315 DEAHNMEDVCREAASTEVDLATMAEVLGCFQ 345
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
++ I LK MGR CPY+ AR+ A+++ Y YL+DP I ++ ++ ++VF
Sbjct: 256 LHDIEDLKGMGRSNKACPYYTARKWADEAEVIFAPYSYLIDPVIRRAMAVDV-EGCMLVF 314
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 799
DEAHN+++VC ++ S ++ T+ + +G Q
Sbjct: 315 DEAHNMEDVCREAASTEVDLATMAEVLGCFQ 345
Score = 43.1 bits (100), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L + ++ +++ G+L+++ A +PDG++ F SY+ L+ ++A W G++ L+
Sbjct: 638 LNATWKNQNEAGFQDGVGRLILEGAASIPDGLLVFLPSYVLLDKLMARWKFSGLLAQLEA 697
Query: 640 RKLLFIE----TQDAL 651
K + E QDAL
Sbjct: 698 LKKVVQEPRGGGQDAL 713
>gi|320591639|gb|EFX04078.1| dead domain containing protein [Grosmannia clavigera kw1407]
Length = 911
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 11/103 (10%)
Query: 565 VVPDGVVCFFT------SYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 618
V+P +C +T S L+ F+ R IR+ G ++++ VVPDGVV FF SY
Sbjct: 639 VIPPSNLCVWTLAFISPSSPPLDFSFQKRSLAQTIRDLGAAMLNLCAVVPDGVVVFFPSY 698
Query: 619 LYLESVVASWYDQG-----IIDNLQKRKLLFIETQDALDSRSV 656
YL+ VVA+W G + D L RK +F+ET+ A S V
Sbjct: 699 GYLDEVVAAWKTAGPGATSLWDRLCARKTVFLETRGAASSDDV 741
Score = 40.8 bits (94), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 14/164 (8%)
Query: 10 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDA-----VGREAPLAPGVYSITKLKEMG 64
++ RC L + + G+ IP C F + R+A LA + I L +G
Sbjct: 328 INDRCAELQKPKKKTKTDDGKKIPGCPFAPSAENRVAERQFRDAALAT-LPDIEDLFRLG 386
Query: 65 RELGLCPYFLARQAI---IHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI-- 119
EL +CPY+ +R+A A+IV Y LL + L +SVV+ DEAHNI
Sbjct: 387 TELHVCPYYGSRRAAEAGGGAEIVTLPYPLLLHKAAREALGIRL-ENSVVIVDEAHNIMD 445
Query: 120 --DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKL 161
V +L RR + G+ + + G L + + SA +
Sbjct: 446 AVAGVHAAALLAVYVRRFGRRLRGDGRVMVGQLGRVIQGLSAWM 489
Score = 40.8 bits (94), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 14/164 (8%)
Query: 665 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDA-----VGREAPLAPGVYSITKLKEMG 719
++ RC L + + G+ IP C F + R+A LA + I L +G
Sbjct: 328 INDRCAELQKPKKKTKTDDGKKIPGCPFAPSAENRVAERQFRDAALAT-LPDIEDLFRLG 386
Query: 720 RELGLCPYFLARQAI---IHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI-- 774
EL +CPY+ +R+A A+IV Y LL + L +SVV+ DEAHNI
Sbjct: 387 TELHVCPYYGSRRAAEAGGGAEIVTLPYPLLLHKAAREALGIRL-ENSVVIVDEAHNIMD 445
Query: 775 --DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKL 816
V +L RR + G+ + + G L + + SA +
Sbjct: 446 AVAGVHAAALLAVYVRRFGRRLRGDGRVMVGQLGRVIQGLSAWM 489
>gi|440889948|gb|ELR44730.1| Regulator of telomere elongation helicase 1 [Bos grunniens mutus]
Length = 1264
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L G + LCPY+L+R A I+ Y+YLLD
Sbjct: 169 CHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLD 228
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K +L + +VV+FDEAHN++ +C ++ S + + + I Q LE +
Sbjct: 229 AKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDLTPHDVASGLDVIDQVLE---ERT 284
Query: 154 KEADSAKLREEYA 166
K A A+L E++
Sbjct: 285 KVAQQAELHPEFS 297
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L G + LCPY+L+R A I+ Y+YLLD
Sbjct: 169 CHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLD 228
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K +L + +VV+FDEAHN++ +C ++ S + + + I Q LE +
Sbjct: 229 AKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDLTPHDVASGLDVIDQVLE---ERT 284
Query: 809 KEADSAKLREEYA 821
K A A+L E++
Sbjct: 285 KVAQQAELHPEFS 297
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 554 NYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVC 613
N Q+ V + PDG L S F+ R + + G++L +I+ VVP G++
Sbjct: 503 NQHQIWVGVIPKGPDGA--------QLSSAFDRRFSDECLSSLGKVLSNISRVVPHGLLV 554
Query: 614 FFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ---------DALDSRSVSKERDGKI 664
FF SY +E + W + L+ RK LF+E + +A +R + E G I
Sbjct: 555 FFPSYPVMEKSLEFWRARDFTRKLEVRKPLFVEPRSKGGFSEVMEAFYARVAAPESSGAI 614
Query: 665 VDGRCHSLTSSSV 677
C S +
Sbjct: 615 FLAVCRGKASEGL 627
>gi|157120352|ref|XP_001653621.1| regulator of telomere elongation helicase 1 rtel1 [Aedes aegypti]
gi|122117342|sp|Q16X92.1|RTEL1_AEDAE RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|108875002|gb|EAT39227.1| AAEL008960-PA [Aedes aegypti]
Length = 1010
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 121/262 (46%), Gaps = 24/262 (9%)
Query: 34 VCDFYEKFDAVGREAP--LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 91
C FY + ++ +E P ++ + I L ++G ++ CP+FL+++ I A I+ Y+Y
Sbjct: 183 TCSFYSRVESC-KERPEVVSNVIMDIEDLVKVGTKVRACPFFLSKELIESADILFMPYNY 241
Query: 92 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLK 151
LLDPK + E++ +++++ DEAHN++ +C +S S++I I + ++ ++ +
Sbjct: 242 LLDPKARKANNLEIS-NTIIILDEAHNVEKMCEESASMQIRSTDIALCIDDVTSIMKVMD 300
Query: 152 E---MKEADSAKLR---EEYARLVEGLRDAQSARETDVVL---ANPVLPDEILQEVV-PG 201
+ E D K ++ A L E L + ++ V+ P + E+
Sbjct: 301 HSVAIPEDDETKKDFTIDDLALLKEMLLQLEKTVDSIPVMFSQGGNTFPGTYIFEIFEKA 360
Query: 202 NIRTAEHFV--GFLKRFIEYLKTRLRVQQVVQESP-----ATFLKDISSKPAP---SMIS 251
NI+ + + L+ I+Y+ T V+ A L I + P + I
Sbjct: 361 NIKEGNYHIIAQLLENIIQYIATITEKNNFVRRGGGLQILAEALSIIFAGSGPEYRASID 420
Query: 252 EAYRYIFSTEEHLKTRLRVQQV 273
+ Y+ EE KTR V+Q
Sbjct: 421 KCYKVHIEIEEQKKTRGNVKQA 442
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 689 VCDFYEKFDAVGREAP--LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
C FY + ++ +E P ++ + I L ++G ++ CP+FL+++ I A I+ Y+Y
Sbjct: 183 TCSFYSRVESC-KERPEVVSNVIMDIEDLVKVGTKVRACPFFLSKELIESADILFMPYNY 241
Query: 747 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 801
LLDPK + E++ +++++ DEAHN++ +C +S S++I I + ++ ++
Sbjct: 242 LLDPKARKANNLEIS-NTIIILDEAHNVEKMCEESASMQIRSTDIALCIDDVTSI 295
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S + RD+ I + G+ ++ ++P G++ FF SY L +W + GI + +
Sbjct: 534 LNSSYGNRDNPKYISSLGRTILSFCPIIPGGLLVFFPSYPLLNKCQEAWQETGIWAQISR 593
Query: 640 RKLLFIE 646
K +F+E
Sbjct: 594 TKPIFVE 600
>gi|390986509|gb|AFM35774.1| hypothetical protein, partial [Oryza eichingeri]
Length = 62
Score = 67.0 bits (162), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSK 900
+++ K DYG+MIFADKR++R DKRSKLP WI +L D NLST+ A+ +++
Sbjct: 10 VIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIAR 61
>gi|410953370|ref|XP_003983344.1| PREDICTED: regulator of telomere elongation helicase 1 [Felis
catus]
Length = 1477
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E L + I L + G + LCPY+L+R A I+ Y+YLLD
Sbjct: 170 CHFYNNVEEKSLEQELTTSILDIEDLVKSGNKHKLCPYYLSRNLKQQADIIFMPYNYLLD 229
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 230 AKSRRAHSIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDVASGLDAIDQVLEEQTKVA 288
Query: 154 KEAD 157
++ +
Sbjct: 289 QQGE 292
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E L + I L + G + LCPY+L+R A I+ Y+YLLD
Sbjct: 170 CHFYNNVEEKSLEQELTTSILDIEDLVKSGNKHKLCPYYLSRNLKQQADIIFMPYNYLLD 229
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 230 AKSRRAHSIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDVASGLDAIDQVLEEQTKVA 288
Query: 809 KEAD 812
++ +
Sbjct: 289 QQGE 292
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V I PDG L S F+ R + + + G+ L +IA VVP G++ FF
Sbjct: 508 QIWVGIVPKGPDGA--------QLSSAFDKRFSDACLSSLGKALGNIARVVPHGLLVFFP 559
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + L+ K LF+E
Sbjct: 560 SYPVMEKSLEFWRARDFARKLESLKPLFVE 589
>gi|302829651|ref|XP_002946392.1| hypothetical protein VOLCADRAFT_30322 [Volvox carteri f.
nagariensis]
gi|300268138|gb|EFJ52319.1| hypothetical protein VOLCADRAFT_30322 [Volvox carteri f.
nagariensis]
Length = 700
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 48 APLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL-A 106
A L V I +L +G+ G+CP+FL R A A IV Y+YLLDP ++ +
Sbjct: 159 ASLVSSVPDIEELVTVGKTHGVCPFFLGRDAGKEADIVFLPYNYLLDPATRRTMADSINW 218
Query: 107 RSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREE 164
++VV+FDEAHN+++V D+ S I + + A+ LE K ++A R+E
Sbjct: 219 NNAVVIFDEAHNVESVSSDACSFDITAKQLTDAM-----LEA--KRWAGGETAGRRQE 269
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 703 APLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL-A 761
A L V I +L +G+ G+CP+FL R A A IV Y+YLLDP ++ +
Sbjct: 159 ASLVSSVPDIEELVTVGKTHGVCPFFLGRDAGKEADIVFLPYNYLLDPATRRTMADSINW 218
Query: 762 RSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREE 819
++VV+FDEAHN+++V D+ S I + + A+ LE K ++A R+E
Sbjct: 219 NNAVVIFDEAHNVESVSSDACSFDITAKQLTDAM-----LEA--KRWAGGETAGRRQE 269
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
I +PV FP+E Y Q YM + KAL + LLE P+GTGKT LL +A+ +
Sbjct: 2 IAGIPVEFPFE-PYACQRNYMESVIKALQEGRNALLESPTGTGKTLCLLCSTLAWRESLK 60
Query: 488 LDVTKLLYCSRTVPEIEKVV------EELARLFDYYIKHNEEINMTGLVLSSRKNLCIH 540
+ T + PE+ ++ +LA++ + + + VLSSR+ C+H
Sbjct: 61 VGRTSWMSGGAGKPELPIIIYSSRTHSQLAQVMKELRNSSYKDRVRSTVLSSRQQTCLH 119
Score = 46.2 bits (108), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 569 GVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW 628
GV+ S L S + +RD + G LV++A +VPDG++ FF SY ++S + W
Sbjct: 449 GVLPTGPSGAPLNSTYASRDSATYKDELGNALVNVARLVPDGLLVFFASYAAMDSAINHW 508
Query: 629 YDQG 632
G
Sbjct: 509 KQNG 512
>gi|146092080|ref|XP_001470201.1| helicase-like protein [Leishmania infantum JPCM5]
gi|134084995|emb|CAM69394.1| helicase-like protein [Leishmania infantum JPCM5]
Length = 1276
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
Query: 31 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKEM------GRELGLCPYFLARQAIIHAKI 84
++ +C+ +K+D + A P + ++ +M G +CPY+ AR + +A +
Sbjct: 429 SLGLCEMVDKYDELSCSAITGPVGHQRGQIWDMEDLVLEGTSRHMCPYYAARDLVFYADV 488
Query: 85 VVYSYHYLLDPKIANVVSKELA--RSSVVVFDEAHNIDNVCVDSLSVRINR 133
+Y YLLDP I + E A ++VVVFDEAHN+ VC D+LS+ R
Sbjct: 489 NFCTYPYLLDPLIRHETKMEAALKNNAVVVFDEAHNVAAVCQDALSLECPR 539
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
Query: 686 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKEM------GRELGLCPYFLARQAIIHAKI 739
++ +C+ +K+D + A P + ++ +M G +CPY+ AR + +A +
Sbjct: 429 SLGLCEMVDKYDELSCSAITGPVGHQRGQIWDMEDLVLEGTSRHMCPYYAARDLVFYADV 488
Query: 740 VVYSYHYLLDPKIANVVSKELA--RSSVVVFDEAHNIDNVCVDSLSVRINR 788
+Y YLLDP I + E A ++VVVFDEAHN+ VC D+LS+ R
Sbjct: 489 NFCTYPYLLDPLIRHETKMEAALKNNAVVVFDEAHNVAAVCQDALSLECPR 539
>gi|398018175|ref|XP_003862272.1| helicase-like protein [Leishmania donovani]
gi|322500501|emb|CBZ35578.1| helicase-like protein [Leishmania donovani]
Length = 1279
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
Query: 31 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKEM------GRELGLCPYFLARQAIIHAKI 84
++ +C+ +K+D + A P + ++ +M G +CPY+ AR + +A +
Sbjct: 430 SLGLCEMVDKYDELSCSAITGPVGHQRGQIWDMEDLVLEGTSRHMCPYYAARDLVFYADV 489
Query: 85 VVYSYHYLLDPKIANVVSKELA--RSSVVVFDEAHNIDNVCVDSLSVRINR 133
+Y YLLDP I + E A ++VVVFDEAHN+ VC D+LS+ R
Sbjct: 490 NFCTYPYLLDPLIRHETKMEAALKNNAVVVFDEAHNVAAVCQDALSLECPR 540
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
Query: 686 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKEM------GRELGLCPYFLARQAIIHAKI 739
++ +C+ +K+D + A P + ++ +M G +CPY+ AR + +A +
Sbjct: 430 SLGLCEMVDKYDELSCSAITGPVGHQRGQIWDMEDLVLEGTSRHMCPYYAARDLVFYADV 489
Query: 740 VVYSYHYLLDPKIANVVSKELA--RSSVVVFDEAHNIDNVCVDSLSVRINR 788
+Y YLLDP I + E A ++VVVFDEAHN+ VC D+LS+ R
Sbjct: 490 NFCTYPYLLDPLIRHETKMEAALKNNAVVVFDEAHNVAAVCQDALSLECPR 540
>gi|312379509|gb|EFR25759.1| hypothetical protein AND_08621 [Anopheles darlingi]
Length = 972
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 16/132 (12%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM---- 483
I +PV FP+E Y Q YM +L + L + LLE P+GTGKT S+L +A++
Sbjct: 6 IGGVPVDFPFE-PYQVQRDYMSKLLQCLQQSTNGLLESPTGTGKTLSILCASLAWLVHSR 64
Query: 484 ---NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIH 540
NA TK++Y SRT ++ + ++EL + Y++ +VL SR LCIH
Sbjct: 65 SHHNATKAGRTKIIYASRTHSQLSQAMQELKKSSYNYVR--------AIVLGSRIQLCIH 116
Query: 541 SEFETRDDISVI 552
+ ++ + +
Sbjct: 117 PDVPKSENNATV 128
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 35 CDFYEKFDAVGREAPLAP-GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
C +Y + + + + LA + I L +G CP++L+++ + A I+ Y+YLL
Sbjct: 141 CVYYRRVEQMKDSSELANVPILDIEDLVTVGSRTKACPFYLSKEMVERADIIFMPYNYLL 200
Query: 94 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE 152
D K + EL ++SV++ DEAHN++ +C DS S ++ I A+ ++ + T+ E
Sbjct: 201 DAKARKANNLEL-QNSVIILDEAHNVERMCEDSGSAVLSSTDIALAIEDVSHVMETMGE 258
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 690 CDFYEKFDAVGREAPLAP-GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
C +Y + + + + LA + I L +G CP++L+++ + A I+ Y+YLL
Sbjct: 141 CVYYRRVEQMKDSSELANVPILDIEDLVTVGSRTKACPFYLSKEMVERADIIFMPYNYLL 200
Query: 749 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE 807
D K + EL ++SV++ DEAHN++ +C DS S ++ I A+ ++ + T+ E
Sbjct: 201 DAKARKANNLEL-QNSVIILDEAHNVERMCEDSGSAVLSSTDIALAIEDVSHVMETMGE 258
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+LV + DG + L SV+ R++ IR+ G+ L+ + V+P+G++ FF
Sbjct: 465 QVLVRVIAKGSDGQL--------LSSVYNNRNNPDYIRSLGRTLLSVCPVIPNGLLVFFP 516
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE--TQDALDS 653
SY L+ V W G+ + RK +F+E T+DA ++
Sbjct: 517 SYTVLDKCVEGWQSGGLWSEINNRKAIFVEPRTKDAFNT 555
>gi|307176988|gb|EFN66294.1| Regulator of telomere elongation helicase 1 [Camponotus floridanus]
Length = 978
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
C +Y +A + V I L ++G++ CPYFLA++ +A IV Y+YLL
Sbjct: 176 TCFYYNNVEARKDDPVFKQEVLDIEDLVKIGQKHKCCPYFLAKELKQNADIVFMPYNYLL 235
Query: 94 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTI 136
DPK +L +++VV+ DEAHN++ VC ++ S++I+ I
Sbjct: 236 DPKTRKSQGIDL-QNTVVLLDEAHNVEKVCEEAASLQISSTDI 277
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
C +Y +A + V I L ++G++ CPYFLA++ +A IV Y+YLL
Sbjct: 176 TCFYYNNVEARKDDPVFKQEVLDIEDLVKIGQKHKCCPYFLAKELKQNADIVFMPYNYLL 235
Query: 749 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTI 791
DPK +L +++VV+ DEAHN++ VC ++ S++I+ I
Sbjct: 236 DPKTRKSQGIDL-QNTVVLLDEAHNVEKVCEEAASLQISSTDI 277
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S + TR+D I + G+ + + +C++P G++ FF SY ++ W + G+ + +
Sbjct: 523 LNSSYNTRNDPKYIASLGRTVYNFSCIIPHGLLIFFPSYPIMKKCRDEWQNMGLWTQIAE 582
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVD 666
RK +++E +V E KI D
Sbjct: 583 RKPIYVEPNSKDGFVNVMNEYYQKIRD 609
>gi|332025865|gb|EGI66021.1| Fanconi anemia group J protein-like protein [Acromyrmex echinatior]
Length = 653
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 55 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 114
+ I L +G+E+G CPYF AR + A+I+ Y+Y+L P+I + + L R ++V+ D
Sbjct: 113 WDIEDLVSLGKEVGTCPYFGARVLMADAEIIFCPYNYILYPEIRDSMQINL-RGNIVILD 171
Query: 115 EAHNIDNVCVDSLSVRI 131
EAHNI+N+C ++ +V I
Sbjct: 172 EAHNIENICREAATVDI 188
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 710 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 769
+ I L +G+E+G CPYF AR + A+I+ Y+Y+L P+I + + L R ++V+ D
Sbjct: 113 WDIEDLVSLGKEVGTCPYFGARVLMADAEIIFCPYNYILYPEIRDSMQINL-RGNIVILD 171
Query: 770 EAHNIDNVCVDSLSVRI 786
EAHNI+N+C ++ +V I
Sbjct: 172 EAHNIENICREAATVDI 188
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 597 GQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSV 656
G L++ + VP GV+CFF+SY + ++ W + GI D L K +F+E + D V
Sbjct: 440 GNLILQVCDAVPFGVLCFFSSYKAMNTIHNRWRNNGIWDKLSNLKTIFVEPKYEKDLNPV 499
Query: 657 SK 658
K
Sbjct: 500 MK 501
>gi|342186023|emb|CCC95508.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 973
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Query: 35 CDFYEKFDAVGREA---PLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
C+ + +G A PL G V+ I L G + CPY+ AR + A I
Sbjct: 243 CEAVHGYGVLGSRALTRPLNQGRSDKVWDIEDLVTEGVGMKCCPYYAARDLVFFAHINFA 302
Query: 88 SYHYLLDPKIANVVSKE--LARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 145
+Y YLLDP I + E L S+++FDEAHN+ +VC ++LS+ + ++ + IQ
Sbjct: 303 TYQYLLDPLIRHECKMEPALKNHSIIIFDEAHNVSSVCQEALSMEMPLDALQLILSEIQP 362
Query: 146 L 146
L
Sbjct: 363 L 363
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Query: 690 CDFYEKFDAVGREA---PLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
C+ + +G A PL G V+ I L G + CPY+ AR + A I
Sbjct: 243 CEAVHGYGVLGSRALTRPLNQGRSDKVWDIEDLVTEGVGMKCCPYYAARDLVFFAHINFA 302
Query: 743 SYHYLLDPKIANVVSKE--LARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 800
+Y YLLDP I + E L S+++FDEAHN+ +VC ++LS+ + ++ + IQ
Sbjct: 303 TYQYLLDPLIRHECKMEPALKNHSIIIFDEAHNVSSVCQEALSMEMPLDALQLILSEIQP 362
Query: 801 L 801
L
Sbjct: 363 L 363
>gi|297261772|ref|XP_001114510.2| PREDICTED: putative ATP-dependent RNA helicase DDX11-like
protein-like isoform 4 [Macaca mulatta]
Length = 910
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 648 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEAGRILCNLCSVVPGGV 707
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L RK +F E + A
Sbjct: 708 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 746
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 314 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 371
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 132
Y LL L ++ VV+ DEAHN+ + SV ++
Sbjct: 372 PYQMLLHAATRQAAGIRL-QAQVVIIDEAHNLIDTITGMHSVEVS 415
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 314 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 371
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 787
Y LL L ++ VV+ DEAHN+ + SV ++
Sbjct: 372 PYQMLLHAATRQAAGIRL-QAQVVIIDEAHNLIDTITGMHSVEVS 415
Score = 43.1 bits (100), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
++ S N + F+ R+ ++ G++L ++ VVP GVVCFF SY YL V
Sbjct: 666 VICSGISNQPLEFTFQKRELPQMMDEAGRILCNLCSVVPGGVVCFFPSYEYLRQV 720
>gi|402885129|ref|XP_003906018.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein 8
[Papio anubis]
Length = 845
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 583 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEAGRILCNLCSVVPGGV 642
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L RK +F E + A
Sbjct: 643 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 681
Score = 43.1 bits (100), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
++ S N + F+ R+ ++ G++L ++ VVP GVVCFF SY YL V
Sbjct: 601 VICSGISNQPLEFTFQKRELPQMMDEAGRILCNLCSVVPGGVVCFFPSYEYLRQV 655
>gi|383410919|gb|AFH28673.1| putative ATP-dependent RNA helicase DDX11 isoform 1 [Macaca
mulatta]
Length = 906
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 644 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEAGRILCNLCSVVPGGV 703
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L RK +F E + A
Sbjct: 704 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 742
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 132
Y LL L ++ VV+ DEAHN+ + SV ++
Sbjct: 368 PYQMLLHAATRQAAGIRL-QAQVVIIDEAHNLIDTITGMHSVEVS 411
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 787
Y LL L ++ VV+ DEAHN+ + SV ++
Sbjct: 368 PYQMLLHAATRQAAGIRL-QAQVVIIDEAHNLIDTITGMHSVEVS 411
Score = 43.1 bits (100), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
++ S N + F+ R+ ++ G++L ++ VVP GVVCFF SY YL V
Sbjct: 662 VICSGISNQPLEFTFQKRELPQMMDEAGRILCNLCSVVPGGVVCFFPSYEYLRQV 716
>gi|355563978|gb|EHH20478.1| hypothetical protein EGK_03343 [Macaca mulatta]
Length = 906
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 644 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEAGRILCNLCSVVPGGV 703
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L RK +F E + A
Sbjct: 704 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 742
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 132
Y LL L ++ VV+ DEAHN+ + SV ++
Sbjct: 368 PYQMLLHAATRQAAGIRL-QAQVVIIDEAHNLIDTITGMHSVEVS 411
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 787
Y LL L ++ VV+ DEAHN+ + SV ++
Sbjct: 368 PYQMLLHAATRQAAGIRL-QAQVVIIDEAHNLIDTITGMHSVEVS 411
Score = 43.1 bits (100), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
++ S N + F+ R+ ++ G++L ++ VVP GVVCFF SY YL V
Sbjct: 662 VICSGISNQPLEFTFQKRELPQMMDEAGRILCNLCSVVPGGVVCFFPSYEYLRQV 716
>gi|355785871|gb|EHH66054.1| hypothetical protein EGM_02957 [Macaca fascicularis]
Length = 906
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 644 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEAGRILCNLCSVVPGGV 703
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L RK +F E + A
Sbjct: 704 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 742
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 132
Y LL L ++ VV+ DEAHN+ + SV ++
Sbjct: 368 PYQMLLHAATRQAAGIRL-QAQVVIIDEAHNLIDTITGMHSVEVS 411
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 787
Y LL L ++ VV+ DEAHN+ + SV ++
Sbjct: 368 PYQMLLHAATRQAAGIRL-QAQVVIIDEAHNLIDTITGMHSVEVS 411
Score = 43.1 bits (100), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
++ S N + F+ R+ ++ G++L ++ VVP GVVCFF SY YL V
Sbjct: 662 VICSGISNQPLEFTFQKRELPQMMDEAGRILCNLCSVVPGGVVCFFPSYEYLRQV 716
>gi|322706322|gb|EFY97903.1| DEAD-2 domain-containing protein [Metarhizium anisopliae ARSEF 23]
Length = 924
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 105/245 (42%), Gaps = 36/245 (14%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSG---TGKTTSLLSLIVAYMN 484
ID + +F +YI + AY +E A H E SG T +T +L +V+++
Sbjct: 496 IDQINMFELIQYIQESKLAYKIESYAA-----HVENENDSGKPGTKSSTPVLHTLVSFLV 550
Query: 485 A--HPLDVTKLLYCSRTVP----EIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLC 538
A +P ++ Y + P ++ ++ F + + + G +S +
Sbjct: 551 ALTNPSSEGRIFYQKTSGPAQDVQLSYLLLSPTHAFSSIVSSARAVILAGGTMSPFDDYK 610
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT------SYLYLESVFETRDDISV 592
H F D V + V+P +C +T E ++ R D +
Sbjct: 611 NHL-FPALADPKVT------TLSCGHVIPRENLCVWTLTGTRPGGSSFEFSYQRRGDSEM 663
Query: 593 IRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQG---------IIDNLQKRKLL 643
++ G +++I VVPDGVV FF SY YLE VVA+W + I D LQ RK++
Sbjct: 664 VKELGLAILNICSVVPDGVVVFFPSYGYLEEVVAAWSRRAPGDKNPQTTIWDRLQTRKMV 723
Query: 644 FIETQ 648
F ET+
Sbjct: 724 FRETK 728
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 46 REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL 105
R++ LA V I L ++G+ L +CPY+ +R A+ A+I+ Y LL + +L
Sbjct: 339 RDSALAT-VPDIEDLHQLGKSLAVCPYYASRSALPGAEIITLPYPLLLQRSAREALGIKL 397
Query: 106 ARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVG 141
+VV+ DEAHN+ + + + I + K G
Sbjct: 398 -EGNVVIIDEAHNVMDAVANVHAAEIKLSDLHKGRG 432
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 701 REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL 760
R++ LA V I L ++G+ L +CPY+ +R A+ A+I+ Y LL + +L
Sbjct: 339 RDSALAT-VPDIEDLHQLGKSLAVCPYYASRSALPGAEIITLPYPLLLQRSAREALGIKL 397
Query: 761 ARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVG 796
+VV+ DEAHN+ + + + I + K G
Sbjct: 398 -EGNVVIIDEAHNVMDAVANVHAAEIKLSDLHKGRG 432
>gi|320169108|gb|EFW46007.1| hypothetical protein CAOG_03975 [Capsaspora owczarzaki ATCC 30864]
Length = 1452
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 14/119 (11%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA---RSSV 110
V+ I L E+G++ CPYF AR+ + A IV Y+YL+DP V+ K++ + S+
Sbjct: 362 VWDIEDLVELGKKTRSCPYFAAREMVGEANIVFCPYNYLVDP----VIRKQMGLNIKDSI 417
Query: 111 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 169
++ DEAHNI++V +S+S+ + ++E+ V + + G+L+ M S RE + +V
Sbjct: 418 IILDEAHNIEDVARESMSLTV---SLEELV-DAENETGSLRLMC---SPGCRESFGDVV 469
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 14/119 (11%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA---RSSV 765
V+ I L E+G++ CPYF AR+ + A IV Y+YL+DP V+ K++ + S+
Sbjct: 362 VWDIEDLVELGKKTRSCPYFAAREMVGEANIVFCPYNYLVDP----VIRKQMGLNIKDSI 417
Query: 766 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV 824
++ DEAHNI++V +S+S+ + ++E+ V + + G+L+ M S RE + +V
Sbjct: 418 IILDEAHNIEDVARESMSLTV---SLEELV-DAENETGSLRLMC---SPGCRESFGDVV 469
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQ 598
+ +EF R + + QL V V P G L V+++ + S GQ
Sbjct: 723 LQTEFAVRMEGKHQVDPSQLWVGAVGVGPSGT--------ELSGVYKSAETFSYQDEVGQ 774
Query: 599 LLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
L++ + VP GV+CFF SY LE + W D G+ L +K +F+E + A
Sbjct: 775 LVLRVCRTVPHGVLCFFPSYSLLEKMTLRWRDTGVWQQLAAQKTMFVEPKSA 826
>gi|296481054|tpg|DAA23169.1| TPA: regulator of telomere elongation helicase 1 [Bos taurus]
Length = 583
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L G + LCPY+L+R A I+ Y+YLLD
Sbjct: 171 CHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLD 230
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE-M 153
K +L + +VV+FDEAHN++ +C ++ S + T + ++ L+E
Sbjct: 231 AKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDL---TPHDVASELDVIDRVLEERT 286
Query: 154 KEADSAKLREEYA 166
K A A+L E++
Sbjct: 287 KVAQQAELHPEFS 299
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L G + LCPY+L+R A I+ Y+YLLD
Sbjct: 171 CHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLD 230
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE-M 808
K +L + +VV+FDEAHN++ +C ++ S + T + ++ L+E
Sbjct: 231 AKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDL---TPHDVASELDVIDRVLEERT 286
Query: 809 KEADSAKLREEYA 821
K A A+L E++
Sbjct: 287 KVAQQAELHPEFS 299
>gi|71413416|ref|XP_808847.1| helicase [Trypanosoma cruzi strain CL Brener]
gi|70873137|gb|EAN86996.1| helicase, putative [Trypanosoma cruzi]
Length = 951
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 96/203 (47%), Gaps = 34/203 (16%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA-H 486
I D+ V FP+ YP Q YM + AL + + LLE P+GTGKT LL +A++ H
Sbjct: 6 IGDVGVSFPFN-PYPAQVEYMRAVIDALKGRCNALLESPTGTGKTLCLLCSALAWLEKRH 64
Query: 487 PL----------DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKN 536
+ T+++YCSRT ++ V+ EL R ++ + +M+ +L SR++
Sbjct: 65 GMTQQRYQIEGAGRTRVIYCSRTHAQLSHVIRELKR-----TRYGDIFSMS--LLGSREH 117
Query: 537 LCIHSEFETRDDISVIR-NYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRN 595
+C++S+ V+R + Q + + + C F F+ R+ +
Sbjct: 118 MCVNSQ--------VLRLSTAQAQQSMCNTLREEKNCRFY------RGFQARNGHNTAVK 163
Query: 596 YGQLLVDIACVVPDGVVCFFTSY 618
G+ + D+ +V DG C + Y
Sbjct: 164 DGKWVHDMEDLVSDGRKCGYCPY 186
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 35 CDFYEKFDAV-GREAPLAPG--VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 91
C FY F A G + G V+ + L GR+ G CPY+ R+ A IV Y+Y
Sbjct: 146 CRFYRGFQARNGHNTAVKDGKWVHDMEDLVSDGRKCGYCPYYSEREEAKEADIVFLPYNY 205
Query: 92 LLDPKIANVVSKELARSSVVVFDEAHNIDNV 122
+ D I + L + S+++ DEAHN+ +V
Sbjct: 206 VFDLSIRKQLPFNL-KGSILIVDEAHNLPSV 235
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 690 CDFYEKFDAV-GREAPLAPG--VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
C FY F A G + G V+ + L GR+ G CPY+ R+ A IV Y+Y
Sbjct: 146 CRFYRGFQARNGHNTAVKDGKWVHDMEDLVSDGRKCGYCPYYSEREEAKEADIVFLPYNY 205
Query: 747 LLDPKIANVVSKELARSSVVVFDEAHNIDNV 777
+ D I + L + S+++ DEAHN+ +V
Sbjct: 206 VFDLSIRKQLPFNL-KGSILIVDEAHNLPSV 235
>gi|395743927|ref|XP_002822926.2| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11, partial
[Pongo abelii]
Length = 636
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 374 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEAGRILCNLCGVVPGGV 433
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF+SY YL V A W G++ L RK +F E + A
Sbjct: 434 VCFFSSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 472
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 34 VCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 91
C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV Y
Sbjct: 44 ACPFYNH-EQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVLPYQM 101
Query: 92 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTLEGTL 150
LL L + VV+ DEAHN+ + SV ++ + +A +Q +E
Sbjct: 102 LLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHSQLLQYMERYG 160
Query: 151 KEMKEADSAKLRE 163
K +K + L++
Sbjct: 161 KRLKAKNLMYLKQ 173
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 689 VCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV Y
Sbjct: 44 ACPFYNH-EQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVLPYQM 101
Query: 747 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTLEGTL 805
LL L + VV+ DEAHN+ + SV ++ + +A +Q +E
Sbjct: 102 LLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHSQLLQYMERYG 160
Query: 806 KEMKEADSAKLRE 818
K +K + L++
Sbjct: 161 KRLKAKNLMYLKQ 173
Score = 43.5 bits (101), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
++ S N + F+ R+ ++ G++L ++ VVP GVVCFF+SY YL V
Sbjct: 392 VICSGISNQPLEFTFQKRELPQMMDEAGRILCNLCGVVPGGVVCFFSSYEYLRQV 446
>gi|410348526|gb|JAA40867.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 [Pan troglodytes]
Length = 972
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 644 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGV 703
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L RK +F E + A
Sbjct: 704 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 742
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTL 146
Y LL L + VV+ DEAHN+ + SV ++ + +A +Q +
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHSQLLQYM 426
Query: 147 EGTLKEMKEADSAKLRE 163
E K +K + L++
Sbjct: 427 EQYGKRLKAKNLMYLKQ 443
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTL 801
Y LL L + VV+ DEAHN+ + SV ++ + +A +Q +
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHSQLLQYM 426
Query: 802 EGTLKEMKEADSAKLRE 818
E K +K + L++
Sbjct: 427 EQYGKRLKAKNLMYLKQ 443
Score = 42.7 bits (99), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
++ S N + F+ R+ ++ G++L ++ VVP GVVCFF SY YL V
Sbjct: 662 VICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQV 716
>gi|145517083|ref|XP_001444430.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124411841|emb|CAK77033.1| unnamed protein product [Paramecium tetraurelia]
Length = 905
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 18/127 (14%)
Query: 425 GLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN 484
L++D+ PV+FP++ Y Q +YM + +AL+ K + LLE P+GTGKT SLL +A++
Sbjct: 49 SLVLDNTPVYFPHQ-PYDVQKSYMESVIRALNKKQNALLESPTGTGKTLSLLCASLAWLK 107
Query: 485 AHPLDV--------TKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKN 536
+ D K++Y SRT ++++V EL + + ++M G SR
Sbjct: 108 KNRKDQLNSDQPKNIKIIYSSRTHAQLKQVAMELKKTV-----YKPNVSMLG----SRDQ 158
Query: 537 LCIHSEF 543
CI +F
Sbjct: 159 YCIRGDF 165
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 7/129 (5%)
Query: 16 SLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLA 75
+L + S R K+ + C FY+K + + + S+ + K+ G + LCPY+
Sbjct: 171 TLLNQSCRKSVKSNQ----CQFYKKEHLILMAQNYSTLISSLDEAKQFGFKNKLCPYYFE 226
Query: 76 RQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRT 135
RQ + A +++ Y+YLL+ +VV E +S+++FDEAHN+ + + S I
Sbjct: 227 RQRLDFADLILLPYNYLLEKDFQDVVEIE---NSILIFDEAHNVQSTAEEGSSFLITHNN 283
Query: 136 IEKAVGNIQ 144
I +A +++
Sbjct: 284 IIEAEKDLE 292
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 7/129 (5%)
Query: 671 SLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLA 730
+L + S R K+ + C FY+K + + + S+ + K+ G + LCPY+
Sbjct: 171 TLLNQSCRKSVKSNQ----CQFYKKEHLILMAQNYSTLISSLDEAKQFGFKNKLCPYYFE 226
Query: 731 RQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRT 790
RQ + A +++ Y+YLL+ +VV E +S+++FDEAHN+ + + S I
Sbjct: 227 RQRLDFADLILLPYNYLLEKDFQDVVEIE---NSILIFDEAHNVQSTAEEGSSFLITHNN 283
Query: 791 IEKAVGNIQ 799
I +A +++
Sbjct: 284 IIEAEKDLE 292
>gi|332839867|ref|XP_003313867.1| PREDICTED: probable ATP-dependent RNA helicase DDX11 isoform 3 [Pan
troglodytes]
Length = 972
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 644 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGV 703
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L RK +F E + A
Sbjct: 704 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 742
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTL 146
Y LL L + VV+ DEAHN+ + SV ++ + +A +Q +
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHSQLLQYM 426
Query: 147 EGTLKEMKEADSAKLRE 163
E K +K + L++
Sbjct: 427 EQYGKRLKAKNLMYLKQ 443
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTL 801
Y LL L + VV+ DEAHN+ + SV ++ + +A +Q +
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHSQLLQYM 426
Query: 802 EGTLKEMKEADSAKLRE 818
E K +K + L++
Sbjct: 427 EQYGKRLKAKNLMYLKQ 443
Score = 42.7 bits (99), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
++ S N + F+ R+ ++ G++L ++ VVP GVVCFF SY YL V
Sbjct: 662 VICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQV 716
>gi|444517021|gb|ELV11342.1| Regulator of telomere elongation helicase 1 [Tupaia chinensis]
Length = 1288
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 2/125 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + +E L+ + I L G + +CPY+L+R A ++ Y+YLLD
Sbjct: 204 CHFYNNVEEWSQEQELSSPILDIEDLVRSGSQHRVCPYYLSRNRKQQADLIFMPYNYLLD 263
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
PK +L + +VV+ DEAHN++ +C +S S + + + + Q LE K
Sbjct: 264 PKSRRAHGIDL-KGTVVILDEAHNVEKMCEESASFDLTPHDVASGLDALDQVLEEQTKLA 322
Query: 154 KEADS 158
+ ++S
Sbjct: 323 QRSES 327
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 2/125 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + +E L+ + I L G + +CPY+L+R A ++ Y+YLLD
Sbjct: 204 CHFYNNVEEWSQEQELSSPILDIEDLVRSGSQHRVCPYYLSRNRKQQADLIFMPYNYLLD 263
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
PK +L + +VV+ DEAHN++ +C +S S + + + + Q LE K
Sbjct: 264 PKSRRAHGIDL-KGTVVILDEAHNVEKMCEESASFDLTPHDVASGLDALDQVLEEQTKLA 322
Query: 809 KEADS 813
+ ++S
Sbjct: 323 QRSES 327
>gi|229891626|sp|A4K436.1|RTEL1_BOVIN RecName: Full=Regulator of telomere elongation helicase 1
gi|89887297|gb|ABD78308.1| regulator of telomere length splice variant isoform 3 [Bos taurus]
Length = 1216
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L G + LCPY+L+R A I+ Y+YLLD
Sbjct: 171 CHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLD 230
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE-M 153
K +L + +VV+FDEAHN++ +C ++ S + T + ++ L+E
Sbjct: 231 AKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDL---TPHDVASELDVIDRVLEERT 286
Query: 154 KEADSAKLREEYA 166
K A A+L E++
Sbjct: 287 KVAQQAELHPEFS 299
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L G + LCPY+L+R A I+ Y+YLLD
Sbjct: 171 CHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLD 230
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE-M 808
K +L + +VV+FDEAHN++ +C ++ S + T + ++ L+E
Sbjct: 231 AKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDL---TPHDVASELDVIDRVLEERT 286
Query: 809 KEADSAKLREEYA 821
K A A+L E++
Sbjct: 287 KVAQQAELHPEFS 299
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 554 NYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVC 613
N Q+ V + PDG L S F+ R + + G++L +I+ VVP G++
Sbjct: 505 NQHQIWVGVIPKGPDGA--------QLSSAFDRRFSDECLSSLGKVLSNISRVVPHGLLV 556
Query: 614 FFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ---------DALDSRSVSKERDGKI 664
FF SY +E + W + L+ RK LF+E + +A +R + E G I
Sbjct: 557 FFPSYPVMEKSLEFWRARDFTRKLEVRKPLFVEPRSKGGFSEVMEAFYARVAAPESSGAI 616
Query: 665 VDGRCHSLTSSSV 677
C S +
Sbjct: 617 FLAVCRGKASEGL 629
>gi|29792240|gb|AAH50522.1| DDX11 protein [Homo sapiens]
Length = 970
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 644 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGV 703
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L RK +F E + A
Sbjct: 704 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 742
Score = 47.0 bits (110), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 132
Y LL L + VV+ DEAHN+ + SV ++
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVS 411
Score = 47.0 bits (110), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 787
Y LL L + VV+ DEAHN+ + SV ++
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVS 411
Score = 42.7 bits (99), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
++ S N + F+ R+ ++ G++L ++ VVP GVVCFF SY YL V
Sbjct: 662 VICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQV 716
>gi|45201086|ref|NP_986656.1| AGL010Wp [Ashbya gossypii ATCC 10895]
gi|74691951|sp|Q750G3.1|CHL1_ASHGO RecName: Full=ATP-dependent RNA helicase CHL1; AltName:
Full=Chromosome loss protein 1
gi|44985869|gb|AAS54480.1| AGL010Wp [Ashbya gossypii ATCC 10895]
gi|374109907|gb|AEY98812.1| FAGL010Wp [Ashbya gossypii FDAG1]
Length = 801
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 565 VVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 624
V+PD + F E F R+DI++I + +A VP G+V FF+SY Y++ V
Sbjct: 559 VIPDDNLNAFIVSENFEFTFANREDIALIERLFHFIYQLASRVPFGMVVFFSSYKYIDFV 618
Query: 625 VASWYDQGIIDNLQKRKLLFIETQDALD-----SRSVSKERDGKIV 665
V +W D+G++ L K ++ ET D D S ++ E+ G I+
Sbjct: 619 VKTWTDRGLLSRLDAIKRIYHETSDGADVLKGYSETIQSEKKGAIL 664
Score = 43.1 bits (100), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
+ I L +G L CPY+ +R+ I A+++ Y +LL + +L R S++V
Sbjct: 288 IQDIEDLVGIGNTLHACPYYSSRELIEGAEVITLPYQHLLLENARKTMGIDL-RDSIIVI 346
Query: 114 DEAHNI 119
DEAHN+
Sbjct: 347 DEAHNL 352
Score = 43.1 bits (100), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
+ I L +G L CPY+ +R+ I A+++ Y +LL + +L R S++V
Sbjct: 288 IQDIEDLVGIGNTLHACPYYSSRELIEGAEVITLPYQHLLLENARKTMGIDL-RDSIIVI 346
Query: 769 DEAHNI 774
DEAHN+
Sbjct: 347 DEAHNL 352
>gi|89887299|gb|ABD78309.1| regulator of telomere length splice variant isoform 4 [Bos taurus]
Length = 1121
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L G + LCPY+L+R A I+ Y+YLLD
Sbjct: 171 CHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLD 230
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE-M 153
K +L + +VV+FDEAHN++ +C ++ S + T + ++ L+E
Sbjct: 231 AKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDL---TPHDVASELDVIDRVLEERT 286
Query: 154 KEADSAKLREEYA 166
K A A+L E++
Sbjct: 287 KVAQQAELHPEFS 299
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L G + LCPY+L+R A I+ Y+YLLD
Sbjct: 171 CHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLD 230
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE-M 808
K +L + +VV+FDEAHN++ +C ++ S + T + ++ L+E
Sbjct: 231 AKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDL---TPHDVASELDVIDRVLEERT 286
Query: 809 KEADSAKLREEYA 821
K A A+L E++
Sbjct: 287 KVAQQAELHPEFS 299
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 554 NYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVC 613
N Q+ V + PDG L S F+ R + + G++L +I+ VVP G++
Sbjct: 505 NQHQIWVGVIPKGPDGA--------QLSSAFDRRFSDECLSSLGKVLSNISRVVPHGLLV 556
Query: 614 FFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ---------DALDSRSVSKERDGKI 664
FF SY +E + W + L+ RK LF+E + +A +R + E G I
Sbjct: 557 FFPSYPVMEKSLEFWRARDFTRKLEVRKPLFVEPRSKGGFSEVMEAFYARVAAPESSGAI 616
Query: 665 VDGRCHSLTSSSV 677
C S +
Sbjct: 617 FLAVCRGKASEGL 629
>gi|322781255|gb|EFZ10173.1| hypothetical protein SINV_12884 [Solenopsis invicta]
Length = 884
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 13/146 (8%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKE + CHS V+ R C +Y +A + V I L
Sbjct: 155 VSKETNTFNKIHMCHS----KVKSR--------TCFYYNNVEARKDDPVFKEEVLDIEDL 202
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
++G++ CPYFL ++ +A IV Y+YLLDPK +L +++VV+ DEAHN++
Sbjct: 203 VKLGQKHKCCPYFLTKELKQNADIVFMPYNYLLDPKTRRSQGIDL-QNTVVLLDEAHNVE 261
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTL 146
VC ++ S++I+ I + + ++
Sbjct: 262 KVCEEAASLQISSTDIAMCIDEVTSV 287
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 13/146 (8%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKE + CHS V+ R C +Y +A + V I L
Sbjct: 155 VSKETNTFNKIHMCHS----KVKSR--------TCFYYNNVEARKDDPVFKEEVLDIEDL 202
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
++G++ CPYFL ++ +A IV Y+YLLDPK +L +++VV+ DEAHN++
Sbjct: 203 VKLGQKHKCCPYFLTKELKQNADIVFMPYNYLLDPKTRRSQGIDL-QNTVVLLDEAHNVE 261
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTL 801
VC ++ S++I+ I + + ++
Sbjct: 262 KVCEEAASLQISSTDIAMCIDEVTSV 287
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 556 GQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFF 615
GQ+ V I PD L S + TR+D I + G+ + + +C+VP G++ FF
Sbjct: 508 GQVCVGILSQGPDNHP--------LNSSYNTRNDPKYIASLGRTVYNFSCIVPHGLLIFF 559
Query: 616 TSYLYLESVVASWYDQGI 633
SY ++ W + G+
Sbjct: 560 PSYPIMKKCRDEWQNMGL 577
Score = 44.3 bits (103), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 64/160 (40%), Gaps = 52/160 (32%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKT------------- 472
+ I+D+ V FP++ YP Q YM ++ + L H +LE P+GTGKT
Sbjct: 4 ITINDIVVNFPFK-PYPVQLEYMKKVIECLQNSQHGVLESPTGTGKTLSLLCSSLSWLLT 62
Query: 473 --TSLLSLIVA----------------------------YMNAHPLDVTKLLYCSRTVPE 502
L + ++A + + + K++Y SRT +
Sbjct: 63 KKAQLQAQMIAGAIEKKDLGGHFFKHLTNGLEKAVGLPDNVQSFGWSMAKIIYASRTHSQ 122
Query: 503 IEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
+ + + EL R KH + VL SR LCIH E
Sbjct: 123 LSQAMHELKRT---SYKH-----VATTVLGSRDQLCIHPE 154
>gi|132566527|ref|NP_689651.1| probable ATP-dependent RNA helicase DDX11 isoform 3 [Homo sapiens]
gi|380420356|ref|NP_001244073.1| probable ATP-dependent RNA helicase DDX11 isoform 3 [Homo sapiens]
gi|74731686|sp|Q96FC9.1|DDX11_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX11; AltName:
Full=CHL1-related protein 1; Short=hCHLR1; AltName:
Full=DEAD/H box protein 11; AltName: Full=Keratinocyte
growth factor-regulated gene 2 protein; Short=KRG-2
Length = 970
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 644 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGV 703
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L RK +F E + A
Sbjct: 704 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 742
Score = 47.0 bits (110), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 132
Y LL L + VV+ DEAHN+ + SV ++
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVS 411
Score = 47.0 bits (110), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 787
Y LL L + VV+ DEAHN+ + SV ++
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVS 411
Score = 42.7 bits (99), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
++ S N + F+ R+ ++ G++L ++ VVP GVVCFF SY YL V
Sbjct: 662 VICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQV 716
>gi|84627555|gb|AAI11734.1| DDX11 protein [Homo sapiens]
Length = 906
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ RD ++ G++L ++ VV GV
Sbjct: 644 VVEFSCGHVIPPDNILPLVICIGVSNQPLEFTFQKRDLPQMMDEVGRILCNLCSVVSGGV 703
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ +L RK +F E + A
Sbjct: 704 VCFFPSYEYLRQVHAHWEKGGLLGHLAARKKIFQEPKSA 742
Score = 47.0 bits (110), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 132
Y LL L + VV+ DEAHN+ + SV ++
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVS 411
Score = 47.0 bits (110), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 787
Y LL L + VV+ DEAHN+ + SV ++
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVS 411
>gi|301780626|ref|XP_002925736.1| PREDICTED: LOW QUALITY PROTEIN: regulator of telomere elongation
helicase 1-like [Ailuropoda melanoleuca]
Length = 1303
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L G + LCPY+L+R A I+ Y+YLLD
Sbjct: 171 CHFYNNVEEKSLEQELATPILDIEDLVRSGNKHKLCPYYLSRNLKQQADIIFMPYNYLLD 230
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K S +L + ++V+FDEAHN++ +C ++ S + + + I Q LE K
Sbjct: 231 AKSRRAHSIDL-KGTIVIFDEAHNVEKMCEETASFDLTPHDLASGLDAIDQVLEEQTKAA 289
Query: 154 KE 155
++
Sbjct: 290 QQ 291
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L G + LCPY+L+R A I+ Y+YLLD
Sbjct: 171 CHFYNNVEEKSLEQELATPILDIEDLVRSGNKHKLCPYYLSRNLKQQADIIFMPYNYLLD 230
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K S +L + ++V+FDEAHN++ +C ++ S + + + I Q LE K
Sbjct: 231 AKSRRAHSIDL-KGTIVIFDEAHNVEKMCEETASFDLTPHDLASGLDAIDQVLEEQTKAA 289
Query: 809 KE 810
++
Sbjct: 290 QQ 291
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 17/130 (13%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V I PDG L S F+ R + + + G+ L +IA VVP G++ FF
Sbjct: 509 QMWVGIVPKGPDGA--------QLSSAFDKRFSDACLSSLGKALGNIARVVPHGLLVFFP 560
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQ---------DALDSRSVSKERDGKIVDG 667
SY +E + W L+ K +F+E + DA +R+ S G +
Sbjct: 561 SYPVMEKSLEFWRAHDFARKLEALKPVFVEPRSKGGFSEVVDAYYTRAASPGSSGAVFLA 620
Query: 668 RCHSLTSSSV 677
C S +
Sbjct: 621 VCRGKASEGL 630
>gi|60811280|gb|AAX36168.1| DEAD/H box polypeptide 11 [synthetic construct]
Length = 971
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 644 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGV 703
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L RK +F E + A
Sbjct: 704 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 742
Score = 47.0 bits (110), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 132
Y LL L + VV+ DEAHN+ + SV ++
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVS 411
Score = 47.0 bits (110), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 787
Y LL L + VV+ DEAHN+ + SV ++
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVS 411
Score = 42.7 bits (99), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
++ S N + F+ R+ ++ G++L ++ VVP GVVCFF SY YL V
Sbjct: 662 VICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQV 716
>gi|330843781|ref|XP_003293824.1| hypothetical protein DICPUDRAFT_5561 [Dictyostelium purpureum]
gi|325075810|gb|EGC29655.1| hypothetical protein DICPUDRAFT_5561 [Dictyostelium purpureum]
Length = 617
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 33 PVCDFYEKFDAVGREAPLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYS 88
P C +Y+K + + G V+ I LK+ G+E CP+F+++ + + +V
Sbjct: 147 PGCRYYKKEFVLSSISTFRKGGAKQVWDIEDLKKAGQEHSECPFFVSKDMLPSSDLVFCP 206
Query: 89 YHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 128
Y+YL+DP I + + K+ ++S+V+FDEAHNI++ +D+ S
Sbjct: 207 YNYLIDPSIRSTL-KDKVKNSIVIFDEAHNIEDALMDASS 245
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 688 PVCDFYEKFDAVGREAPLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYS 743
P C +Y+K + + G V+ I LK+ G+E CP+F+++ + + +V
Sbjct: 147 PGCRYYKKEFVLSSISTFRKGGAKQVWDIEDLKKAGQEHSECPFFVSKDMLPSSDLVFCP 206
Query: 744 YHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 783
Y+YL+DP I + + K+ ++S+V+FDEAHNI++ +D+ S
Sbjct: 207 YNYLIDPSIRSTL-KDKVKNSIVIFDEAHNIEDALMDASS 245
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 36/138 (26%)
Query: 433 VFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM--------- 483
V FP++ YP Q + M + LD K +CLLE P+GTGKT +LL + +
Sbjct: 4 VKFPFK-PYPSQASMMSRILSGLDNKENCLLESPTGTGKTLTLLCSALEWHREDLKKSNN 62
Query: 484 -----------------NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINM 526
N P + +CSRT +I+++ EELA K NM
Sbjct: 63 NNNGSDSDDTDSEDPVENFRPNPSPTIFFCSRTHSQIKQLTEELA-------KTPYRPNM 115
Query: 527 TGLVLSSRKNLCIHSEFE 544
LV+ SR + CI+ E +
Sbjct: 116 --LVMGSRDHYCINKELK 131
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 588 DDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIET 647
D S + G+ +++ ++P GV+CFF SY +LE + W G++D + + K F E
Sbjct: 492 DSFSFQDSLGETIIEHIKIIPSGVLCFFPSYGFLEKITDRWASTGLLDKINELKPAFAEP 551
Query: 648 QDALD 652
++ D
Sbjct: 552 KNIKD 556
>gi|196008361|ref|XP_002114046.1| hypothetical protein TRIADDRAFT_27892 [Trichoplax adhaerens]
gi|190583065|gb|EDV23136.1| hypothetical protein TRIADDRAFT_27892 [Trichoplax adhaerens]
Length = 702
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 4/139 (2%)
Query: 27 KAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVV 86
+A N C F + + + + I +L E+G + +CPY++AR+ +A IV
Sbjct: 146 RAKVNARTCHFCNNVETKKDDPSFSENILDIEELVELGGKQKVCPYYMARELRSNADIVF 205
Query: 87 YSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 146
Y+YL+D K S ++ ++++++ DEAHN++ +C DS S ++ I + +
Sbjct: 206 MPYNYLIDFKSRQSNSIDM-KNAIIICDEAHNLEKICEDSASFDLSSADIANCIDEVDNF 264
Query: 147 EGTLKEMKEADSAKLREEY 165
L+ +K + EEY
Sbjct: 265 INILQRIKSTTDS---EEY 280
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 4/139 (2%)
Query: 682 KAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVV 741
+A N C F + + + + I +L E+G + +CPY++AR+ +A IV
Sbjct: 146 RAKVNARTCHFCNNVETKKDDPSFSENILDIEELVELGGKQKVCPYYMARELRSNADIVF 205
Query: 742 YSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 801
Y+YL+D K S ++ ++++++ DEAHN++ +C DS S ++ I + +
Sbjct: 206 MPYNYLIDFKSRQSNSIDM-KNAIIICDEAHNLEKICEDSASFDLSSADIANCIDEVDNF 264
Query: 802 EGTLKEMKEADSAKLREEY 820
L+ +K + EEY
Sbjct: 265 INILQRIKSTTDS---EEY 280
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S + R + + G +V+ A ++PDG++ FF SY + S + W GI D + +
Sbjct: 467 LNSSYRNRSSAEYLSSLGNTIVNFARIIPDGLLVFFPSYPVMNSCIEHWQSSGIWDRICQ 526
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRC 669
K L IE Q + V E + D C
Sbjct: 527 HKSLHIEPQHKSEFNRVMDEYYSSVRDENC 556
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 31/133 (23%)
Query: 431 LPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDV 490
+ V FP+ YP Q YM + + L + +LE P+GTGKT LL +A+ + V
Sbjct: 9 IEVDFPFN-PYPCQLDYMTNVIQCLQEGKNGILESPTGTGKTLCLLCACLAWRQTYVAQV 67
Query: 491 T---------------------KLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGL 529
K++Y SRT ++ +VV EL + +I
Sbjct: 68 QLNQRIQMQQLQQNPNTDRNMPKIIYSSRTHSQLSQVVNELKHTI-----YRPKI----C 118
Query: 530 VLSSRKNLCIHSE 542
+L SR+ +CIH E
Sbjct: 119 ILGSREQMCIHPE 131
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
+++ + DYG +I D+RF + D S+LPKW+++Y+
Sbjct: 638 VIRHRNDYGAIILCDERFNQKDSISQLPKWLKDYV 672
>gi|410671135|ref|YP_006923506.1| Rad3-related DNA helicase [Methanolobus psychrophilus R15]
gi|409170263|gb|AFV24138.1| Rad3-related DNA helicase [Methanolobus psychrophilus R15]
Length = 703
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 15/143 (10%)
Query: 723 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNVCV 779
G+C Y L ++ + HA V+ +YH++L+ I + V L + S +V+FDEAHNI++
Sbjct: 191 GMCGYELLKRELKHADFVICNYHHVLNADIFSTVLNWLEKESQDVIVIFDEAHNIESAAR 250
Query: 780 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKL--------REEY-ARLVEGLRDA 830
S+ I TI+KA+ I E L +M + + L R+ Y +R G R+
Sbjct: 251 SHSSITITEHTIDKAISEI---EANLDQMPDGGAHNLFKILLNVIRDTYTSRFKFGERER 307
Query: 831 QSARETDVVLANPVLPDEILQGK 853
D+ +++P ++++ GK
Sbjct: 308 VGRNWYDIRISDPYERNDMISGK 330
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 9/115 (7%)
Query: 68 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNVCV 124
G+C Y L ++ + HA V+ +YH++L+ I + V L + S +V+FDEAHNI++
Sbjct: 191 GMCGYELLKRELKHADFVICNYHHVLNADIFSTVLNWLEKESQDVIVIFDEAHNIESAAR 250
Query: 125 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 179
S+ I TI+KA+ I E L +M + + L + L+ +RD ++R
Sbjct: 251 SHSSITITEHTIDKAISEI---EANLDQMPDGGAHNL---FKILLNVIRDTYTSR 299
>gi|347964194|ref|XP_311162.5| AGAP000634-PA [Anopheles gambiae str. PEST]
gi|387912925|sp|Q7QEI1.5|RTEL1_ANOGA RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|333467418|gb|EAA06834.5| AGAP000634-PA [Anopheles gambiae str. PEST]
Length = 991
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/382 (20%), Positives = 147/382 (38%), Gaps = 91/382 (23%)
Query: 35 CDFYEKFDAVGREAPLAP-GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
C FY + + +A V I L +GR+L CPY+L+++ + A ++ Y+YLL
Sbjct: 175 CSFYNRVETAKDRPDVATVPVMDIEDLVTVGRKLKACPYYLSKELVEQADVIFMPYNYLL 234
Query: 94 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEM 153
DPK L +++V++ DEAHN++ +C + S + I A+ + ++ +K M
Sbjct: 235 DPKARKSNGLSL-QNTVIILDEAHNVEKMCEEVGSALLRSSDIALAIEDTSSV---IKSM 290
Query: 154 KEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFL 213
+ G ++ ++ L + VL EIL
Sbjct: 291 MDGG-------------GAWTGDGEKQLELTLDDLVLLKEIL------------------ 319
Query: 214 KRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQV 273
L V++ V + P F + ++ P YIF E + V
Sbjct: 320 ----------LGVEKAVDDIPILFSQGGTTHPG--------TYIFDLLEKANIKFGNINV 361
Query: 274 VQESPATFLKDISSKVCIERKPLRFCAERLASLL-RTLEITNLTDFSSLVVITHLATLVS 332
V + + + I++ E+ + R + ++ DF +V +
Sbjct: 362 VLQVMNSLITHITT-------------EKTGGFVRRGAGLQSMVDFLEVVFASSGPEYRQ 408
Query: 333 SYTKGFAIIVEPFSD---------------------KAPT-VPNPVLYFCCLDSSLAIKP 370
+ K F + +EP KAP + V+ F C + ++
Sbjct: 409 AVEKCFRVHIEPEEPKQLAKGGVKRADGWTATKQPLKAPVKSTSKVINFWCFNPGFGMRQ 468
Query: 371 VFDR-FQTVVITSGTLSPLDMY 391
+ D +++++TSGTL+PL +
Sbjct: 469 LVDSGTRSIILTSGTLAPLKPF 490
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 35/200 (17%)
Query: 616 TSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSS 675
TSYL++ S++ DQ I +SK+ + I C
Sbjct: 131 TSYLFVRSIILGSRDQLCIHP------------------DISKQENNAIKTVLCRE---- 168
Query: 676 SVRDRHKAGENIPVCDFYEKFDAVGREAPLAP-GVYSITKLKEMGRELGLCPYFLARQAI 734
SV+ R+ C FY + + +A V I L +GR+L CPY+L+++ +
Sbjct: 169 SVKARN--------CSFYNRVETAKDRPDVATVPVMDIEDLVTVGRKLKACPYYLSKELV 220
Query: 735 IHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKA 794
A ++ Y+YLLDPK L +++V++ DEAHN++ +C + S + I A
Sbjct: 221 EQADVIFMPYNYLLDPKARKSNGLSL-QNTVIILDEAHNVEKMCEEVGSALLRSSDIALA 279
Query: 795 VGNIQTLEGTLKEMKEADSA 814
+ + ++ +K M + A
Sbjct: 280 IEDTSSV---IKSMMDGGGA 296
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 50/166 (30%)
Query: 427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM--- 483
MI+ +PV FP+E Y Q YM ++ + L K + +LE P+GTGKT SLL +A++
Sbjct: 5 MINGIPVNFPFE-PYELQKNYMAKVIECLQNKTNGVLESPTGTGKTLSLLCSSMAWLLHM 63
Query: 484 ----NAHPLDV----------------------------------TKLLYCSRTVPEIEK 505
H ++ K++Y SRT ++ +
Sbjct: 64 KSKQPKHRMETIDTLPEPPELSNAKHAALDPEQALALQQQKANAKMKIIYASRTHSQLSQ 123
Query: 506 VVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISV 551
++EL K+ + + ++L SR LCIH + +++ ++
Sbjct: 124 AMQEL--------KNTSYLFVRSIILGSRDQLCIHPDISKQENNAI 161
Score = 43.5 bits (101), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S F+ R + I + G+ + + ++P G++ FF SY L W GI + +
Sbjct: 527 LNSSFKNRSNPEYIASLGRTALSLCPIIPGGLLIFFPSYPLLNKCSEEWQASGIWGQISR 586
Query: 640 RKLLFIE 646
K +F+E
Sbjct: 587 LKQIFVE 593
>gi|332839865|ref|XP_520821.3| PREDICTED: probable ATP-dependent RNA helicase DDX11 isoform 4 [Pan
troglodytes]
Length = 880
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 618 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGV 677
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L RK +F E + A
Sbjct: 678 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 716
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 284 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 341
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTL 146
Y LL L + VV+ DEAHN+ + SV ++ + +A +Q +
Sbjct: 342 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHSQLLQYM 400
Query: 147 EGTLKEMKEADSAKLRE 163
E K +K + L++
Sbjct: 401 EQYGKRLKAKNLMYLKQ 417
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 284 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 341
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTL 801
Y LL L + VV+ DEAHN+ + SV ++ + +A +Q +
Sbjct: 342 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHSQLLQYM 400
Query: 802 EGTLKEMKEADSAKLRE 818
E K +K + L++
Sbjct: 401 EQYGKRLKAKNLMYLKQ 417
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
++ S N + F+ R+ ++ G++L ++ VVP GVVCFF SY YL V
Sbjct: 636 VICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQV 690
>gi|89887293|gb|ABD78306.1| regulator of telomere length splice variant isoform 1 [Bos taurus]
Length = 1082
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L G + LCPY+L+R A I+ Y+YLLD
Sbjct: 171 CHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLD 230
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE-M 153
K +L + +VV+FDEAHN++ +C ++ S + T + ++ L+E
Sbjct: 231 AKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDL---TPHDVASELDVIDRVLEERT 286
Query: 154 KEADSAKLREEYA 166
K A A+L E++
Sbjct: 287 KVAQQAELHPEFS 299
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L G + LCPY+L+R A I+ Y+YLLD
Sbjct: 171 CHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLD 230
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE-M 808
K +L + +VV+FDEAHN++ +C ++ S + T + ++ L+E
Sbjct: 231 AKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDL---TPHDVASELDVIDRVLEERT 286
Query: 809 KEADSAKLREEYA 821
K A A+L E++
Sbjct: 287 KVAQQAELHPEFS 299
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 554 NYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVC 613
N Q+ V + PDG L S F+ R + + G++L +I+ VVP G++
Sbjct: 505 NQHQIWVGVIPKGPDGA--------QLSSAFDRRFSDECLSSLGKVLSNISRVVPHGLLV 556
Query: 614 FFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ---------DALDSRSVSKERDGKI 664
FF SY +E + W + L+ RK LF+E + +A +R + E G I
Sbjct: 557 FFPSYPVMEKSLEFWRARDFTRKLEVRKPLFVEPRSKGGFSEVMEAFYARVAAPESSGAI 616
Query: 665 VDGRCHSLTSSSV 677
C S +
Sbjct: 617 FLAVCRGKASEGL 629
>gi|198436769|ref|XP_002122486.1| PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide
11 [Ciona intestinalis]
Length = 907
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 551 VIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDG 610
VI QLL P GV FT F+ R + +I G+LL++I+ ++P G
Sbjct: 654 VIDGKRQLLPLALSSGPSGVEFEFT--------FQKRSNFKLIDETGRLLLNISNIIPGG 705
Query: 611 VVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VVCFF SY Y VV W D GI+ L+ +K +F E + A
Sbjct: 706 VVCFFPSYDYERFVVQRWQDAGILSRLEMKKKIFREPKKA 745
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Query: 34 VCDFYEKFDAVGREAPLAPG-VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYL 92
C +Y D + + G ++ I ++ + G+ L CPY+ +R A+ +++VV Y L
Sbjct: 318 TCCYYTNHDGIAQLTNTIVGKIHDIEEVIKEGKSLEACPYYASRHAVTLSQLVVLPYQTL 377
Query: 93 LDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
L +L + SVV+ DEAHN+ S + + + KA G +
Sbjct: 378 LHKATRQASGIKL-KDSVVIIDEAHNLVEALNSMHSCLVTAKQLSKAYGQL 427
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Query: 689 VCDFYEKFDAVGREAPLAPG-VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYL 747
C +Y D + + G ++ I ++ + G+ L CPY+ +R A+ +++VV Y L
Sbjct: 318 TCCYYTNHDGIAQLTNTIVGKIHDIEEVIKEGKSLEACPYYASRHAVTLSQLVVLPYQTL 377
Query: 748 LDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
L +L + SVV+ DEAHN+ S + + + KA G +
Sbjct: 378 LHKATRQASGIKL-KDSVVIIDEAHNLVEALNSMHSCLVTAKQLSKAYGQL 427
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVI 593
F+ R + +I G+LL++I+ ++P GVVCFF SY Y V + D ++
Sbjct: 679 FQKRSNFKLIDETGRLLLNISNIIPGGVVCFFPSYDYERFVVQRWQDAGIL 729
>gi|1666893|gb|AAB18749.1| CHL1 potential helicase [Homo sapiens]
Length = 906
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 644 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGV 703
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L RK +F E + A
Sbjct: 704 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 742
Score = 47.4 bits (111), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 132
Y LL L + VV+ DEAHN+ + SV ++
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVS 411
Score = 47.4 bits (111), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 787
Y LL L + VV+ DEAHN+ + SV ++
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVS 411
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
++ S N + F+ R+ ++ G++L ++ VVP GVVCFF SY YL V
Sbjct: 662 VICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQV 716
>gi|410348520|gb|JAA40864.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 [Pan troglodytes]
gi|410348522|gb|JAA40865.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 [Pan troglodytes]
gi|410348524|gb|JAA40866.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 [Pan troglodytes]
Length = 906
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 644 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGV 703
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L RK +F E + A
Sbjct: 704 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 742
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTL 146
Y LL L + VV+ DEAHN+ + SV ++ + +A +Q +
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHSQLLQYM 426
Query: 147 EGTLKEMKEADSAKLRE 163
E K +K + L++
Sbjct: 427 EQYGKRLKAKNLMYLKQ 443
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTL 801
Y LL L + VV+ DEAHN+ + SV ++ + +A +Q +
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHSQLLQYM 426
Query: 802 EGTLKEMKEADSAKLRE 818
E K +K + L++
Sbjct: 427 EQYGKRLKAKNLMYLKQ 443
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
++ S N + F+ R+ ++ G++L ++ VVP GVVCFF SY YL V
Sbjct: 662 VICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQV 716
>gi|1517816|gb|AAB06962.1| helicase [Homo sapiens]
Length = 906
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 644 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGV 703
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L RK +F E + A
Sbjct: 704 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 742
Score = 47.4 bits (111), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 132
Y LL L + VV+ DEAHN+ + SV ++
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVS 411
Score = 47.4 bits (111), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 787
Y LL L + VV+ DEAHN+ + SV ++
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVS 411
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
++ S N + F+ R+ ++ G++L ++ VVP GVVCFF SY YL V
Sbjct: 662 VICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQV 716
>gi|119595649|gb|EAW75243.1| hCG22751, isoform CRA_d [Homo sapiens]
Length = 1023
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 154 KEAD 157
++ +
Sbjct: 291 QQGE 294
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 809 KEAD 812
++ +
Sbjct: 291 QQGE 294
Score = 44.3 bits (103), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 510 QIWVGVVPRGPDGA--------QLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + + ++ K LF+E
Sbjct: 562 SYPVMEKSLEFWRARDLARKMEALKPLFVE 591
>gi|332839861|ref|XP_003313865.1| PREDICTED: probable ATP-dependent RNA helicase DDX11 isoform 1 [Pan
troglodytes]
gi|410258634|gb|JAA17284.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 [Pan troglodytes]
gi|410301530|gb|JAA29365.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 [Pan troglodytes]
Length = 906
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 644 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGV 703
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L RK +F E + A
Sbjct: 704 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 742
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTL 146
Y LL L + VV+ DEAHN+ + SV ++ + +A +Q +
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHSQLLQYM 426
Query: 147 EGTLKEMKEADSAKLRE 163
E K +K + L++
Sbjct: 427 EQYGKRLKAKNLMYLKQ 443
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTL 801
Y LL L + VV+ DEAHN+ + SV ++ + +A +Q +
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHSQLLQYM 426
Query: 802 EGTLKEMKEADSAKLRE 818
E K +K + L++
Sbjct: 427 EQYGKRLKAKNLMYLKQ 443
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
++ S N + F+ R+ ++ G++L ++ VVP GVVCFF SY YL V
Sbjct: 662 VICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQV 716
>gi|89887295|gb|ABD78307.1| regulator of telomere length splice variant isoform 2 [Bos taurus]
Length = 1237
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L G + LCPY+L+R A I+ Y+YLLD
Sbjct: 171 CHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLD 230
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE-M 153
K +L + +VV+FDEAHN++ +C ++ S + T + ++ L+E
Sbjct: 231 AKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDL---TPHDVASELDVIDRVLEERT 286
Query: 154 KEADSAKLREEYA 166
K A A+L E++
Sbjct: 287 KVAQQAELHPEFS 299
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L G + LCPY+L+R A I+ Y+YLLD
Sbjct: 171 CHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLD 230
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE-M 808
K +L + +VV+FDEAHN++ +C ++ S + T + ++ L+E
Sbjct: 231 AKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDL---TPHDVASELDVIDRVLEERT 286
Query: 809 KEADSAKLREEYA 821
K A A+L E++
Sbjct: 287 KVAQQAELHPEFS 299
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 554 NYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVC 613
N Q+ V + PDG L S F+ R + + G++L +I+ VVP G++
Sbjct: 505 NQHQIWVGVIPKGPDGA--------QLSSAFDRRFSDECLSSLGKVLSNISRVVPHGLLV 556
Query: 614 FFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ---------DALDSRSVSKERDGKI 664
FF SY +E + W + L+ RK LF+E + +A +R + E G I
Sbjct: 557 FFPSYPVMEKSLEFWRARDFTRKLEVRKPLFVEPRSKGGFSEVMEAFYARVAAPESSGAI 616
Query: 665 VDGRCHSLTSSSV 677
C S +
Sbjct: 617 FLAVCRGKASEGL 629
>gi|100913202|ref|NP_085911.2| probable ATP-dependent RNA helicase DDX11 isoform 1 [Homo sapiens]
Length = 906
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 644 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGV 703
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L RK +F E + A
Sbjct: 704 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 742
Score = 47.4 bits (111), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 132
Y LL L + VV+ DEAHN+ + SV ++
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVS 411
Score = 47.4 bits (111), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 787
Y LL L + VV+ DEAHN+ + SV ++
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVS 411
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
++ S N + F+ R+ ++ G++L ++ VVP GVVCFF SY YL V
Sbjct: 662 VICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQV 716
>gi|380420358|ref|NP_001244074.1| probable ATP-dependent RNA helicase DDX11 isoform 4 [Homo sapiens]
gi|29476793|gb|AAH50069.1| DDX11 protein [Homo sapiens]
Length = 880
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 618 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGV 677
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L RK +F E + A
Sbjct: 678 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 716
Score = 47.4 bits (111), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI A++VV
Sbjct: 284 EKQAACPFY-NHEQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIPAAQLVVL 341
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 132
Y LL L + VV+ DEAHN+ + SV ++
Sbjct: 342 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVS 385
Score = 47.4 bits (111), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI A++VV
Sbjct: 284 EKQAACPFY-NHEQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIPAAQLVVL 341
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 787
Y LL L + VV+ DEAHN+ + SV ++
Sbjct: 342 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVS 385
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
++ S N + F+ R+ ++ G++L ++ VVP GVVCFF SY YL V
Sbjct: 636 VICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQV 690
>gi|148225626|ref|NP_001091044.1| regulator of telomere elongation helicase 1 [Bos taurus]
gi|84105070|gb|ABC54575.1| regulator of telomere length helicase 1 [Bos taurus]
gi|84105072|gb|ABC54576.1| regulator of telomere length helicase 1 [Bos taurus]
Length = 1266
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L G + LCPY+L+R A I+ Y+YLLD
Sbjct: 171 CHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLD 230
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE-M 153
K +L + +VV+FDEAHN++ +C ++ S + T + ++ L+E
Sbjct: 231 AKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDL---TPHDVASELDVIDRVLEERT 286
Query: 154 KEADSAKLREEYA 166
K A A+L E++
Sbjct: 287 KVAQQAELHPEFS 299
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L G + LCPY+L+R A I+ Y+YLLD
Sbjct: 171 CHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLD 230
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE-M 808
K +L + +VV+FDEAHN++ +C ++ S + T + ++ L+E
Sbjct: 231 AKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDL---TPHDVASELDVIDRVLEERT 286
Query: 809 KEADSAKLREEYA 821
K A A+L E++
Sbjct: 287 KVAQQAELHPEFS 299
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 554 NYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVC 613
N Q+ V + PDG L S F+ R + + G++L +I+ VVP G++
Sbjct: 505 NQHQIWVGVIPKGPDGA--------QLSSAFDRRFSDECLSSLGKVLSNISRVVPHGLLV 556
Query: 614 FFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ---------DALDSRSVSKERDGKI 664
FF SY +E + W + L+ RK LF+E + +A +R + E G I
Sbjct: 557 FFPSYPVMEKSLEFWRARDFTRKLEVRKPLFVEPRSKGGFSEVMEAFYARVAAPESSGAI 616
Query: 665 VDGRCHSLTSSSV 677
C S +
Sbjct: 617 FLAVCRGKASEGL 629
>gi|205716435|sp|A8MPP1.1|D11L8_HUMAN RecName: Full=Putative ATP-dependent RNA helicase DDX11-like
protein 8; AltName: Full=DEAD/H box protein 11-like 8
Length = 907
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 559 LVDIAC---VVPDG---VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVV 612
+V+ +C + PD V+C S LE F+ RD ++ G++L ++ VV GVV
Sbjct: 646 VVEFSCGHVIPPDNIPLVICSGISNQPLEFTFQKRDLPQMMDEVGRILCNLCGVVSGGVV 705
Query: 613 CFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
CFF+SY YL V A W G++ L RK +F E + A
Sbjct: 706 CFFSSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 743
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI AK+VV
Sbjct: 312 EKQAACPFY-NHEQMGLLRDEALAE-VKDMEQLLALGKEARACPYYRSRLAIPAAKLVVL 369
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 132
Y LL L + VV+ DEAHN+ + SV ++
Sbjct: 370 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVS 413
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI AK+VV
Sbjct: 312 EKQAACPFY-NHEQMGLLRDEALAE-VKDMEQLLALGKEARACPYYRSRLAIPAAKLVVL 369
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 787
Y LL L + VV+ DEAHN+ + SV ++
Sbjct: 370 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVS 413
Score = 42.7 bits (99), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 525 NMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
N+ ++ S N + F+ RD ++ G++L ++ VV GVVCFF+SY YL V
Sbjct: 659 NIPLVICSGISNQPLEFTFQKRDLPQMMDEVGRILCNLCGVVSGGVVCFFSSYEYLRQV 717
>gi|194387848|dbj|BAG61337.1| unnamed protein product [Homo sapiens]
Length = 1004
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 154 KEAD 157
++ +
Sbjct: 291 QQGE 294
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 809 KEAD 812
++ +
Sbjct: 291 QQGE 294
Score = 44.3 bits (103), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 510 QIWVGVVPRGPDGA--------QLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + + ++ K LF+E
Sbjct: 562 SYPVMEKSLEFWRARDLARKMEALKPLFVE 591
>gi|403309188|ref|XP_003945007.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Saimiri boliviensis boliviensis]
Length = 903
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 641 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEAGRILCNLCGVVPGGV 700
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
VCFF SY YL V W G++D L RK +F E
Sbjct: 701 VCFFPSYEYLRQVHTHWEKGGLLDRLAARKKIFQE 735
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 28/226 (12%)
Query: 663 KIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFY--EKFDAVGREAPLAPGVYS 711
++++ RC + S + A E P C FY E+ D + R+ LA V
Sbjct: 279 QLINDRCVDMQRSRHGKKKGAEEEKPKRRRQEKQAACPFYNHEQMDLL-RDEALAE-VKD 336
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I +L +G+E CPY+ +R AI A++VV Y LL L + VV+ DEA
Sbjct: 337 IEQLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRKAAGIRL-QDQVVIIDEA 395
Query: 772 HNIDNVCVDSLSVRINRRTIEKAVGN-IQTLEGTLKEMKEADSAKLR------EEYARLV 824
HN+ + SV ++ + +A +Q +E K +K + L+ E++ ++
Sbjct: 396 HNLIDTITGMHSVEVSGSQLCQAHSQLLQYMERYRKRLKAKNLMYLKQILYLLEKFVAML 455
Query: 825 EG----LRDAQSARETDVVLANPVLPDEILQGKTDYGIMIFADKRF 866
G QS +T L + D + Q +TD I +F +R+
Sbjct: 456 GGNIKQNPSTQSLSQTGTELK--TINDFLFQSQTD-NINLFKVQRY 498
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 8 KIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFY--EKFDAVGREAPLAPGVYS 56
++++ RC + S + A E P C FY E+ D + R+ LA V
Sbjct: 279 QLINDRCVDMQRSRHGKKKGAEEEKPKRRRQEKQAACPFYNHEQMDLL-RDEALAE-VKD 336
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I +L +G+E CPY+ +R AI A++VV Y LL L + VV+ DEA
Sbjct: 337 IEQLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRKAAGIRL-QDQVVIIDEA 395
Query: 117 HNIDNVCVDSLSVRINRRTIEKAVGN-IQTLEGTLKEMKEADSAKLRE 163
HN+ + SV ++ + +A +Q +E K +K + L++
Sbjct: 396 HNLIDTITGMHSVEVSGSQLCQAHSQLLQYMERYRKRLKAKNLMYLKQ 443
Score = 43.1 bits (100), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 492 KLLYCSRTVPEIEKVVEELARLFDYYIKHN-EEINMTGLVLSSR-KNLCIHSEFETRDDI 549
+LL C+ PE R+ ++ H N+ LV+ S N + F+ R+
Sbjct: 629 QLLACAGVEPE---------RVVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELP 679
Query: 550 SVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
++ G++L ++ VVP GVVCFF SY YL V
Sbjct: 680 QMMDEAGRILCNLCGVVPGGVVCFFPSYEYLRQV 713
>gi|410219260|gb|JAA06849.1| regulator of telomere elongation helicase 1 [Pan troglodytes]
gi|410263662|gb|JAA19797.1| regulator of telomere elongation helicase 1 [Pan troglodytes]
Length = 1220
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 154 KEAD 157
++ +
Sbjct: 291 QQGE 294
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 809 KEAD 812
++ +
Sbjct: 291 QQGE 294
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 510 QIWVGVVPRGPDGA--------QLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + + ++ K LF+E
Sbjct: 562 SYPVMEKSLEFWRARDLARKMEALKPLFVE 591
>gi|426392491|ref|XP_004062583.1| PREDICTED: regulator of telomere elongation helicase 1 isoform 2
[Gorilla gorilla gorilla]
Length = 1244
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 196 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 255
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 256 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 314
Query: 154 KEAD 157
++ +
Sbjct: 315 QQGE 318
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 196 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 255
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 256 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 314
Query: 809 KEAD 812
++ +
Sbjct: 315 QQGE 318
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 534 QIWVGVVPRGPDGA--------QLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFP 585
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + + ++ K LF+E
Sbjct: 586 SYPVMEKSLEFWRARDLARKMEALKPLFVE 615
>gi|7706541|ref|NP_057518.1| regulator of telomere elongation helicase 1 isoform 1 [Homo
sapiens]
gi|229462743|sp|Q9NZ71.2|RTEL1_HUMAN RecName: Full=Regulator of telomere elongation helicase 1; AltName:
Full=Novel helicase-like
gi|6969265|gb|AAF33687.1|AF217795_1 helicase-like protein NHL [Homo sapiens]
gi|119595644|gb|EAW75238.1| hCG22751, isoform CRA_a [Homo sapiens]
gi|119595645|gb|EAW75239.1| hCG22751, isoform CRA_a [Homo sapiens]
gi|119595647|gb|EAW75241.1| hCG22751, isoform CRA_a [Homo sapiens]
Length = 1219
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 154 KEAD 157
++ +
Sbjct: 291 QQGE 294
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 809 KEAD 812
++ +
Sbjct: 291 QQGE 294
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 510 QIWVGVVPRGPDGA--------QLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + + ++ K LF+E
Sbjct: 562 SYPVMEKSLEFWRARDLARKMEALKPLFVE 591
>gi|426392489|ref|XP_004062582.1| PREDICTED: regulator of telomere elongation helicase 1 isoform 1
[Gorilla gorilla gorilla]
Length = 1220
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 154 KEAD 157
++ +
Sbjct: 291 QQGE 294
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 809 KEAD 812
++ +
Sbjct: 291 QQGE 294
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 510 QIWVGVVPRGPDGA--------QLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + + ++ K LF+E
Sbjct: 562 SYPVMEKSLEFWRARDLARKMEALKPLFVE 591
>gi|397477198|ref|XP_003809965.1| PREDICTED: regulator of telomere elongation helicase 1 isoform 1
[Pan paniscus]
Length = 1090
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 196 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 255
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 256 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 314
Query: 154 KEAD 157
++ +
Sbjct: 315 QQGE 318
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 196 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 255
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 256 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 314
Query: 809 KEAD 812
++ +
Sbjct: 315 QQGE 318
Score = 45.1 bits (105), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 534 QIWVGVVPRGPDGA--------QLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFP 585
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + + ++ K LF+E
Sbjct: 586 SYPVMEKSLEFWRARDLARKMEALKPLFVE 615
>gi|332858954|ref|XP_003317100.1| PREDICTED: regulator of telomere elongation helicase 1 isoform 1
[Pan troglodytes]
gi|410301716|gb|JAA29458.1| regulator of telomere elongation helicase 1 [Pan troglodytes]
gi|410341613|gb|JAA39753.1| regulator of telomere elongation helicase 1 [Pan troglodytes]
Length = 1220
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 154 KEAD 157
++ +
Sbjct: 291 QQGE 294
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 809 KEAD 812
++ +
Sbjct: 291 QQGE 294
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 510 QIWVGVVPRGPDGA--------QLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + + ++ K LF+E
Sbjct: 562 SYPVMEKSLEFWRARDLARKMEALKPLFVE 591
>gi|343472331|emb|CCD15481.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 407
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 9/121 (7%)
Query: 35 CDFYEKFDAVGREAPLAP-------GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
C+ + +G A P V+ I L G + CPY+ AR + A I
Sbjct: 243 CEAVHGYGVLGSRALTRPLNQSRSDKVWDIEDLVTEGVGMKCCPYYAARDLVFFAHINFA 302
Query: 88 SYHYLLDPKIANVVSKE--LARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 145
+Y YLLDP I + E L S+++FDEAHN+ +VC ++LS+ + ++ + IQ
Sbjct: 303 TYQYLLDPLIRHECKMEPALKNHSIIIFDEAHNVSSVCQEALSMEMPLDALQLILSEIQP 362
Query: 146 L 146
L
Sbjct: 363 L 363
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 9/121 (7%)
Query: 690 CDFYEKFDAVGREAPLAP-------GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
C+ + +G A P V+ I L G + CPY+ AR + A I
Sbjct: 243 CEAVHGYGVLGSRALTRPLNQSRSDKVWDIEDLVTEGVGMKCCPYYAARDLVFFAHINFA 302
Query: 743 SYHYLLDPKIANVVSKE--LARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 800
+Y YLLDP I + E L S+++FDEAHN+ +VC ++LS+ + ++ + IQ
Sbjct: 303 TYQYLLDPLIRHECKMEPALKNHSIIIFDEAHNVSSVCQEALSMEMPLDALQLILSEIQP 362
Query: 801 L 801
L
Sbjct: 363 L 363
>gi|323510681|ref|NP_116575.3| regulator of telomere elongation helicase 1 isoform 2 [Homo
sapiens]
Length = 1243
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 196 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 255
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 256 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 314
Query: 154 KEAD 157
++ +
Sbjct: 315 QQGE 318
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 196 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 255
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 256 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 314
Query: 809 KEAD 812
++ +
Sbjct: 315 QQGE 318
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 534 QIWVGVVPRGPDGA--------QLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFP 585
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + + ++ K LF+E
Sbjct: 586 SYPVMEKSLEFWRARDLARKMEALKPLFVE 615
>gi|194379638|dbj|BAG63785.1| unnamed protein product [Homo sapiens]
Length = 1243
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 196 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 255
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 256 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 314
Query: 154 KEAD 157
++ +
Sbjct: 315 QQGE 318
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 196 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 255
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 256 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 314
Query: 809 KEAD 812
++ +
Sbjct: 315 QQGE 318
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 534 QIWVGVVPRGPDGA--------QLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFP 585
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + + ++ K LF+E
Sbjct: 586 SYPVMEKSLEFWRARDLARKMEALKPLFVE 615
>gi|440491198|gb|ELQ73865.1| Helicase of the DEAD superfamily, partial [Trachipleistophora
hominis]
Length = 867
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 31/195 (15%)
Query: 19 SSSVRDRHKAGENIPVCDFYEKFDAVGRE--APLAPGVYSITKLKEMGRELGLCPYFLAR 76
++S RD K GE C ++ +G+E A V+ I +L++ G CPY+ +R
Sbjct: 118 NASCRDLVKKGE----CRYF-----MGKERLAKSIGDVHDIEELRQAGERCTGCPYYASR 168
Query: 77 QAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTI 136
A I Y+Y++DP + + EL + SVV+ DEAHNI++ C + S+ + TI
Sbjct: 169 MLSEDAAITFMPYNYVVDPMVRRTMGIEL-KDSVVIVDEAHNIEDACRSAGSIELTNDTI 227
Query: 137 EKAVGNIQTLEGTLKEMKEADSAKLREE------YARLVEGLRDAQSARETDVVLANPVL 190
+ ++ L G + ++E RE+ + R + GL D + R +
Sbjct: 228 DIM---LKELVGVYRRVEE-----YREDLVVLNYFLRKMRGLSDVKMTRSSADSECACFK 279
Query: 191 PDEILQ-----EVVP 200
DEI+Q EVVP
Sbjct: 280 GDEIVQHLAHKEVVP 294
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 26/186 (13%)
Query: 674 SSSVRDRHKAGENIPVCDFYEKFDAVGRE--APLAPGVYSITKLKEMGRELGLCPYFLAR 731
++S RD K GE C ++ +G+E A V+ I +L++ G CPY+ +R
Sbjct: 118 NASCRDLVKKGE----CRYF-----MGKERLAKSIGDVHDIEELRQAGERCTGCPYYASR 168
Query: 732 QAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTI 791
A I Y+Y++DP + + EL + SVV+ DEAHNI++ C + S+ + TI
Sbjct: 169 MLSEDAAITFMPYNYVVDPMVRRTMGIEL-KDSVVIVDEAHNIEDACRSAGSIELTNDTI 227
Query: 792 EKAVGNIQTLEGTLKEMKEADSAKLREE------YARLVEGLRDAQSARETDVVLANPVL 845
+ ++ L G + ++E RE+ + R + GL D + R +
Sbjct: 228 DIM---LKELVGVYRRVEE-----YREDLVVLNYFLRKMRGLSDVKMTRSSADSECACFK 279
Query: 846 PDEILQ 851
DEI+Q
Sbjct: 280 GDEIVQ 285
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 14/118 (11%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
+ I+ + + FP++ YP Q ++ L K ++E P+GTGK+ ++L ++A+
Sbjct: 7 MKINSINITFPFK-PYPAQILTCSKIIDCLKNKKTGIIESPTGTGKSIAILCAVLAW--- 62
Query: 486 HPLD-VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
H + T++ CSRT +++++V +L R Y K VL+SR+ LC++ +
Sbjct: 63 HATNRSTRIFICSRTHKQLDQLVAQL-RATAYAPKV--------CVLASRRALCLNKQ 111
>gi|334312296|ref|XP_001375942.2| PREDICTED: regulator of telomere elongation helicase 1 [Monodelphis
domestica]
Length = 1605
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E L + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSTEKELVTSILDIEDLVKSGNKHRVCPYYLSRTLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ VC +S S + + + I Q LE K +
Sbjct: 232 SKTRRAHNIDL-KGTVVIFDEAHNVEKVCEESASFDLTPFDLASGLDAINQVLEEQTKLL 290
Query: 154 KEAD 157
++ +
Sbjct: 291 QQNE 294
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E L + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSTEKELVTSILDIEDLVKSGNKHRVCPYYLSRTLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ VC +S S + + + I Q LE K +
Sbjct: 232 SKTRRAHNIDL-KGTVVIFDEAHNVEKVCEESASFDLTPFDLASGLDAINQVLEEQTKLL 290
Query: 809 KEAD 812
++ +
Sbjct: 291 QQNE 294
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 9/136 (6%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V I PDGV+ L S ++ R + + G+ + +IA VVP G++ FF
Sbjct: 510 QIWVGIVPKGPDGVL--------LSSAYDKRFSDECLSSLGKTIGNIARVVPHGLLVFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSS 676
SY +E + W D +++ K +F+E + V KIV + + T +
Sbjct: 562 SYPVMEKSLEYWRDHDFARKMEELKAIFVEPRSKGGFTEVIDAYYEKIVCPKSNGATFMA 621
Query: 677 VRDRHKAGENIPVCDF 692
V R KA E + D
Sbjct: 622 V-CRGKASEGLDFADM 636
>gi|168269672|dbj|BAG09963.1| tumor necrosis factor receptor superfamily member 6B precursor
[synthetic construct]
Length = 1400
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 154 KEAD 157
E +
Sbjct: 291 HEGE 294
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 809 KEAD 812
E +
Sbjct: 291 HEGE 294
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 510 QIWVGVVPRGPDGA--------QLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + + ++ K LF+E
Sbjct: 562 SYPVMEKSLEFWRARDLARKMEALKPLFVE 591
>gi|123491434|ref|XP_001325843.1| helicase [Trichomonas vaginalis G3]
gi|121908748|gb|EAY13620.1| helicase, putative [Trichomonas vaginalis G3]
Length = 747
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 67/121 (55%), Gaps = 11/121 (9%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + I+++ + FPY+ YP Q YM ++ ++ D + +LE P+GTGKT SLL ++++
Sbjct: 1 MDVNINEVSIHFPYK-PYPLQETYMSKVIESCDTGNYAILESPTGTGKTLSLLCSVLSWR 59
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEF 543
++++Y SRT ++ V++EL R + T +++SR LC+H
Sbjct: 60 QQRNTS-SRIIYSSRTHSQLSNVIKELKR---------TKFQPTTSIIASRTYLCLHDNI 109
Query: 544 E 544
+
Sbjct: 110 Q 110
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 21/158 (13%)
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I ++ R +CP+F+++ + A ++ Y Y+ DP + + + SVV+FDEA
Sbjct: 152 IDSFVDICRNEAVCPFFVSQFNVKTADFILSPYTYIADPISRSSLPSVVFNKSVVIFDEA 211
Query: 772 HNIDNVCVD--SLSVRINR---------RTIEKAVGNIQTLEGTLKEMKEADSAKLREEY 820
HN C + S+SV N+ R +G + T T S +L +E+
Sbjct: 212 HNFPEQCCEYFSMSVPFNKFCVLRSFLSRQQSNVIGEVVTFGIT--------SVELAKEF 263
Query: 821 ARLV-EGLRDAQSARETDVVLANP-VLPDEILQGKTDY 856
+ LV + L + + VL N L D + K DY
Sbjct: 264 SNLVCDKLELLRKEIHQNFVLKNAKFLFDFFSKCKIDY 301
Score = 47.4 bits (111), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 19/124 (15%)
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I ++ R +CP+F+++ + A ++ Y Y+ DP + + + SVV+FDEA
Sbjct: 152 IDSFVDICRNEAVCPFFVSQFNVKTADFILSPYTYIADPISRSSLPSVVFNKSVVIFDEA 211
Query: 117 HNIDNVCVD--SLSVRINR---------RTIEKAVGNIQTLEGTLKEMKEADSAKLREEY 165
HN C + S+SV N+ R +G + T T S +L +E+
Sbjct: 212 HNFPEQCCEYFSMSVPFNKFCVLRSFLSRQQSNVIGEVVTFGIT--------SVELAKEF 263
Query: 166 ARLV 169
+ LV
Sbjct: 264 SNLV 267
>gi|19074028|ref|NP_584634.1| ATP-DEPENDENT DNA-BINDING HELICASE (RAD3/XPD subfamily)
[Encephalitozoon cuniculi GB-M1]
gi|19068670|emb|CAD25138.1| ATP-DEPENDENT DNA-BINDING HELICASE (RAD3/XPD subfamily)
[Encephalitozoon cuniculi GB-M1]
gi|449329243|gb|AGE95516.1| ATP-dependent DNA-binding helicase [Encephalitozoon cuniculi]
Length = 678
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 12/160 (7%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C ++ D + ++ + ++ I +LK GR CPY+ +R A+++ Y+YL+D
Sbjct: 152 CAYFTGKDRLAKK--VGDKIFDIEELKGEGRRCVGCPYYASRILNEDAEVIFAPYNYLID 209
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIE----KAVGNIQTLEGTL 150
+I L +SVV+ DEAHNI++VC S S+ ++ R +E + +G ++ G L
Sbjct: 210 SRIRESTGISL-ENSVVIVDEAHNIEDVCRSSGSIELSSRIMEIIQNEILGAVKR-SGAL 267
Query: 151 KEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVL 190
E++ D L + + +L EG A+S E D V A L
Sbjct: 268 GEIR-MDFVNLMDFFRKLREG---AESTDEFDRVTAGGKL 303
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 12/160 (7%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C ++ D + ++ + ++ I +LK GR CPY+ +R A+++ Y+YL+D
Sbjct: 152 CAYFTGKDRLAKK--VGDKIFDIEELKGEGRRCVGCPYYASRILNEDAEVIFAPYNYLID 209
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIE----KAVGNIQTLEGTL 805
+I L +SVV+ DEAHNI++VC S S+ ++ R +E + +G ++ G L
Sbjct: 210 SRIRESTGISL-ENSVVIVDEAHNIEDVCRSSGSIELSSRIMEIIQNEILGAVKR-SGAL 267
Query: 806 KEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVL 845
E++ D L + + +L EG A+S E D V A L
Sbjct: 268 GEIR-MDFVNLMDFFRKLREG---AESTDEFDRVTAGGKL 303
>gi|328783139|ref|XP_396001.4| PREDICTED: regulator of telomere elongation helicase 1 homolog
[Apis mellifera]
Length = 976
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 81/159 (50%), Gaps = 14/159 (8%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKE + CHS V+ R C +Y ++ + + I L
Sbjct: 154 VSKETNSSNKIYMCHS----KVKSR--------TCFYYNNIESRKDDPFFKQEILDIEDL 201
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G++ CPYFL+R+ +A I+ Y+Y+LD K + ++ ++++++FDEAHNI+
Sbjct: 202 VKAGQKFKCCPYFLSRELKQNADIIFMPYNYILDAKSRKIQGIDI-QNNIILFDEAHNIE 260
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQ-TLEGTLKEMKEADS 158
+C ++ S++I+ I + I +E K++++ ++
Sbjct: 261 KICEETASLQISSTDIAMCIDEITVVMEDMAKDIEQQNN 299
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 81/159 (50%), Gaps = 14/159 (8%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKE + CHS V+ R C +Y ++ + + I L
Sbjct: 154 VSKETNSSNKIYMCHS----KVKSR--------TCFYYNNIESRKDDPFFKQEILDIEDL 201
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
+ G++ CPYFL+R+ +A I+ Y+Y+LD K + ++ ++++++FDEAHNI+
Sbjct: 202 VKAGQKFKCCPYFLSRELKQNADIIFMPYNYILDAKSRKIQGIDI-QNNIILFDEAHNIE 260
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQ-TLEGTLKEMKEADS 813
+C ++ S++I+ I + I +E K++++ ++
Sbjct: 261 KICEETASLQISSTDIAMCIDEITVVMEDMAKDIEQQNN 299
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V I PDG L S F TR+D IR+ GQ + + +C+VP G++ FF
Sbjct: 509 QICVGILSQGPDGYS--------LNSSFNTRNDPKYIRSLGQTIFNFSCLVPYGLLVFFP 560
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLL 643
SY ++ W + G+ + RK++
Sbjct: 561 SYPIMKKCKEEWQNTGLWTKIADRKVI 587
Score = 43.9 bits (102), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 528 GLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 577
G++ ++S F TR+D IR+ GQ + + +C+VP G++ FF SY
Sbjct: 513 GILSQGPDGYSLNSSFNTRNDPKYIRSLGQTIFNFSCLVPYGLLVFFPSY 562
>gi|393212456|gb|EJC97956.1| DNA repair helicase [Fomitiporia mediterranea MF3/22]
Length = 863
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
LE ++ RDD S+ GQ L ++ + P+G+V FF SY +L+ V + W GI+D +QK
Sbjct: 630 LEFKYKARDDQSLTDELGQCLSNLVSISPNGIVVFFPSYTFLDRVKSRWTSNGILDRIQK 689
Query: 640 RKLLFIETQDALDSRSVSKE 659
+K +F E ++ + +V ++
Sbjct: 690 KKQVFFEPHESSEVENVLRD 709
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I L G+EL LCPYF +R A+ A++V Y+ LL + + +L VV+ DEA
Sbjct: 321 IEDLVSTGKELRLCPYFGSRSAVSSAELVTLPYNLLLHSRSRQALEIDLT-DQVVIVDEA 379
Query: 117 HNIDNVCVD----SLSVRINRRTIEK 138
HN+ + LS + RR I++
Sbjct: 380 HNLIETLLQLHTVELSTSLLRRAIQQ 405
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I L G+EL LCPYF +R A+ A++V Y+ LL + + +L VV+ DEA
Sbjct: 321 IEDLVSTGKELRLCPYFGSRSAVSSAELVTLPYNLLLHSRSRQALEIDLT-DQVVIVDEA 379
Query: 772 HNIDNVCVD----SLSVRINRRTIEK 793
HN+ + LS + RR I++
Sbjct: 380 HNLIETLLQLHTVELSTSLLRRAIQQ 405
>gi|449018745|dbj|BAM82147.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 1142
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 36 DFYEKFDAVGREAPLA-PG--VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYL 92
DF+ F AV + LA PG + L G + +CPYFL+R+A A+I+ Y+YL
Sbjct: 224 DFF--FIAVDSTSTLALPGRRPRDLEDLAAYGHQHAMCPYFLSREASAEAEIIFMPYNYL 281
Query: 93 LDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 150
D K + + +++ DEAHN++++C DSLS ++ V IQ L L
Sbjct: 282 FDGKCRRSLGLSV-EGDIIIGDEAHNLESICCDSLSFDFTAAERQRCVSAIQQLASAL 338
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 691 DFYEKFDAVGREAPLA-PG--VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYL 747
DF+ F AV + LA PG + L G + +CPYFL+R+A A+I+ Y+YL
Sbjct: 224 DFF--FIAVDSTSTLALPGRRPRDLEDLAAYGHQHAMCPYFLSREASAEAEIIFMPYNYL 281
Query: 748 LDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 805
D K + + +++ DEAHN++++C DSLS ++ V IQ L L
Sbjct: 282 FDGKCRRSLGLSV-EGDIIIGDEAHNLESICCDSLSFDFTAAERQRCVSAIQQLASAL 338
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 464 EMPSGTGKTTSL------LSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYY 517
E S TG T S L+L A NAH +L S T+ +E V E+ F
Sbjct: 602 EHRSSTGYTLSFWCLWPGLALRRATSNAH-----AVLLTSGTLSPLESVASEMGASFPVR 656
Query: 518 IKHNEEIN-----MTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVC 572
++++ ++ G++ +++ ++S + R + I + G LV+IA V P G++
Sbjct: 657 LQNSHVVDPATQVFAGILTKGPRDIQLNSSYANRHNREYISDLGSALVNIARVSPRGMLV 716
Query: 573 FFTSYLYLESVFE 585
FF SY+ L E
Sbjct: 717 FFPSYVLLARFVE 729
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
L I +PV FP+E YP Q YM + +AL + LLE P+GTGKT LL +A+
Sbjct: 12 LFIRQVPVEFPFE-PYPCQVRYMEHVIEALQTGQNALLESPTGTGKTLGLLCAALAW 67
Score = 46.2 bits (108), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 62/158 (39%), Gaps = 26/158 (16%)
Query: 559 LVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 618
+VD A V G++ + L S + R + I + G LV+IA V P G++ FF SY
Sbjct: 662 VVDPATQVFAGILTKGPRDIQLNSSYANRHNREYISDLGSALVNIARVSPRGMLVFFPSY 721
Query: 619 LYLESVVASWYDQG--------------------IIDNLQKRKLLFIETQDALDSRSVSK 658
+ L V W + D L K +F+E +DA SR
Sbjct: 722 VLLARFVEIWQTGAFHHNNPLNPAHRGRQPTQATVWDRLNAVKRIFMEPRDADASRQTVD 781
Query: 659 ERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKF 696
I GR L + R + GE I DF + F
Sbjct: 782 AYRQWISSGRDACLFAVC---RGRTGEGI---DFADDF 813
>gi|410055436|ref|XP_003953846.1| PREDICTED: regulator of telomere elongation helicase 1 [Pan
troglodytes]
Length = 1301
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 154 KEAD 157
++ +
Sbjct: 291 QQGE 294
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 809 KEAD 812
++ +
Sbjct: 291 QQGE 294
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 510 QIWVGVVPRGPDGA--------QLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + + ++ K LF+E
Sbjct: 562 SYPVMEKSLEFWRARDLARKMEALKPLFVE 591
>gi|328871465|gb|EGG19835.1| DEAD/DEAH box helicase [Dictyostelium fasciculatum]
Length = 1125
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V+SI + G++LG CPY+ ++ I HA ++ Y+Y+++P I + KE +S+++F
Sbjct: 389 VWSIEDFIDGGKDLGECPYYASKGFIEHANLIFCPYNYIIEPSIRKIF-KEHFDNSIIIF 447
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAV 140
DEAHNI++ + + S + + + ++
Sbjct: 448 DEAHNIEDSLMSAASFELTKEEVNEST 474
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V+SI + G++LG CPY+ ++ I HA ++ Y+Y+++P I + KE +S+++F
Sbjct: 389 VWSIEDFIDGGKDLGECPYYASKGFIEHANLIFCPYNYIIEPSIRKIF-KEHFDNSIIIF 447
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAV 795
DEAHNI++ + + S + + + ++
Sbjct: 448 DEAHNIEDSLMSAASFELTKEEVNEST 474
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%)
Query: 559 LVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 618
L DI V G + T+ ++ F+ +++ G ++ VVP+GV+ FF SY
Sbjct: 696 LGDITKRVWIGTLGVGTNNTKMDCTFKGSENLQFQDALGDAILKHLQVVPNGVLVFFPSY 755
Query: 619 LYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSV 656
++E + W G+ + + + K +F E + D + V
Sbjct: 756 AFMEKIKNRWEMTGMYNKIDQCKPIFFEPKQTKDFKRV 793
>gi|426392493|ref|XP_004062584.1| PREDICTED: regulator of telomere elongation helicase 1 isoform 3
[Gorilla gorilla gorilla]
Length = 1301
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 154 KEAD 157
++ +
Sbjct: 291 QQGE 294
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 809 KEAD 812
++ +
Sbjct: 291 QQGE 294
Score = 45.1 bits (105), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 510 QIWVGVVPRGPDGA--------QLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + + ++ K LF+E
Sbjct: 562 SYPVMEKSLEFWRARDLARKMEALKPLFVE 591
>gi|76155593|gb|AAX26884.2| SJCHGC09335 protein [Schistosoma japonicum]
Length = 412
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 53 GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVV 112
G+ I L G++ CPYF++R+ ++++ Y+YLLD +I + + L ++ V+
Sbjct: 200 GIVDIEDLSNFGQKTRCCPYFISRELKTDSRLIFMPYNYLLDSRIRTLYNINL-ENTAVI 258
Query: 113 FDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 144
FDEAHNI+ VC D+ SV ++ + A+ +++
Sbjct: 259 FDEAHNIEQVCEDASSVTLSSALLASAIEHVR 290
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 708 GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVV 767
G+ I L G++ CPYF++R+ ++++ Y+YLLD +I + + L ++ V+
Sbjct: 200 GIVDIEDLSNFGQKTRCCPYFISRELKTDSRLIFMPYNYLLDSRIRTLYNINL-ENTAVI 258
Query: 768 FDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 799
FDEAHNI+ VC D+ SV ++ + A+ +++
Sbjct: 259 FDEAHNIEQVCEDASSVTLSSALLASAIEHVR 290
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN 484
++ID + + FPY+ Y Q YM ++ +L+ H +LE P+GTGKT LL +A+++
Sbjct: 4 IVIDGVEIDFPYQP-YDCQLEYMTKVLLSLNQGKHAILESPTGTGKTLCLLCASLAWLD 61
>gi|1517818|gb|AAB06963.1| helicase, partial [Homo sapiens]
Length = 734
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ RD ++ G++L ++ VV GV
Sbjct: 496 VVEFSCGHVIPPDNILPLVICIGVSNQPLEFTFQKRDLPQMMDEVGRILCNLCSVVSGGV 555
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ +L RK +F E + A
Sbjct: 556 VCFFPSYEYLRQVHAHWEKGGLLGHLAARKKIFQEPKSA 594
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI A++VV
Sbjct: 162 EKQAACPFY-NHEQMGLLRDEALAE-VKDMEQLLALGKEARACPYYRSRLAIPAAQLVVL 219
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTL 146
SY LL L + VV+ DEAHN+ + SV ++ + +A +Q +
Sbjct: 220 SYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHSQLLQYM 278
Query: 147 EGTLKEMKEADSAKLRE 163
E K +K + L++
Sbjct: 279 ERYGKRLKAKNLMYLKQ 295
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI A++VV
Sbjct: 162 EKQAACPFY-NHEQMGLLRDEALAE-VKDMEQLLALGKEARACPYYRSRLAIPAAQLVVL 219
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTL 801
SY LL L + VV+ DEAHN+ + SV ++ + +A +Q +
Sbjct: 220 SYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHSQLLQYM 278
Query: 802 EGTLKEMKEADSAKLRE 818
E K +K + L++
Sbjct: 279 ERYGKRLKAKNLMYLKQ 295
>gi|383856223|ref|XP_003703609.1| PREDICTED: Fanconi anemia group J protein-like [Megachile
rotundata]
Length = 935
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 13/143 (9%)
Query: 654 RSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI--PV----CDFYEKFDA------VGR 701
++ K++ I+ R H+ S R++ + ++ P+ C FY + +
Sbjct: 318 KTAYKQKKMTILSSREHTCIQESNRNKTELCNDLLDPLKGKRCPFYNESNKKSINSFTSL 377
Query: 702 EAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA 761
E + I L +G+E G+CPYF AR + A I+ Y+Y++DP I + +L
Sbjct: 378 EIRGVNSAWDIEDLVAIGKEEGICPYFAARNLMEFADIIFCPYNYIIDPDIRESMQIDL- 436
Query: 762 RSSVVVFDEAHNIDNVCVDSLSV 784
+ VV+ DEAHNI+++C + SV
Sbjct: 437 KDEVVILDEAHNIEDICREVASV 459
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 13/139 (9%)
Query: 3 KERDGKIVDGRCHSLTSSSVRDRHKAGENI--PV----CDFYEKFDA------VGREAPL 50
K++ I+ R H+ S R++ + ++ P+ C FY + + E
Sbjct: 322 KQKKMTILSSREHTCIQESNRNKTELCNDLLDPLKGKRCPFYNESNKKSINSFTSLEIRG 381
Query: 51 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 110
+ I L +G+E G+CPYF AR + A I+ Y+Y++DP I + +L + V
Sbjct: 382 VNSAWDIEDLVAIGKEEGICPYFAARNLMEFADIIFCPYNYIIDPDIRESMQIDL-KDEV 440
Query: 111 VVFDEAHNIDNVCVDSLSV 129
V+ DEAHNI+++C + SV
Sbjct: 441 VILDEAHNIEDICREVASV 459
>gi|119595646|gb|EAW75240.1| hCG22751, isoform CRA_b [Homo sapiens]
gi|119595651|gb|EAW75245.1| hCG22751, isoform CRA_b [Homo sapiens]
Length = 1300
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 154 KEAD 157
++ +
Sbjct: 291 QQGE 294
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 809 KEAD 812
++ +
Sbjct: 291 QQGE 294
Score = 45.1 bits (105), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 510 QIWVGVVPRGPDGA--------QLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + + ++ K LF+E
Sbjct: 562 SYPVMEKSLEFWRARDLARKMEALKPLFVE 591
>gi|395829361|ref|XP_003787828.1| PREDICTED: regulator of telomere elongation helicase 1 [Otolemur
garnettii]
Length = 1303
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELATPILDIEDLVKSGSKHRVCPYYLSRSLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE ++
Sbjct: 232 AKSRRAHNVDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLE---EQA 287
Query: 154 KEADSAKLREEYA 166
A +LR E++
Sbjct: 288 MVAQQGELRLEFS 300
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELATPILDIEDLVKSGSKHRVCPYYLSRSLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE ++
Sbjct: 232 AKSRRAHNVDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLE---EQA 287
Query: 809 KEADSAKLREEYA 821
A +LR E++
Sbjct: 288 MVAQQGELRLEFS 300
Score = 47.0 bits (110), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 510 QIWVGVIPKGPDGA--------QLSSAFDKRFSEECLSSLGKTLGNIARVVPHGLLVFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E +A W + + ++ K LF+E
Sbjct: 562 SYPVMEKSLAFWRTRDLARKVEALKPLFVE 591
>gi|348533666|ref|XP_003454326.1| PREDICTED: regulator of telomere elongation helicase 1-like
[Oreochromis niloticus]
Length = 1193
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C +Y + + L + + L + G + +CPY+L+R A ++ Y+YLLD
Sbjct: 171 CVYYNNVEEKSTDRDLVNSILDVEDLVQFGTKQRVCPYYLSRSLKQQADVIFMPYNYLLD 230
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
PK + +L +VV+FDEAHN++ C +S S + + A+ + + L KE+
Sbjct: 231 PKSRKAHNIDL-NGAVVIFDEAHNVEKTCEESTSFDLTPYDVASAINAVDRLLVEQAKEI 289
Query: 154 KEADSAKLREEYARLVEGLR 173
DS L GL+
Sbjct: 290 SHKDSVNEDVNVESLSSGLK 309
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C +Y + + L + + L + G + +CPY+L+R A ++ Y+YLLD
Sbjct: 171 CVYYNNVEEKSTDRDLVNSILDVEDLVQFGTKQRVCPYYLSRSLKQQADVIFMPYNYLLD 230
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
PK + +L +VV+FDEAHN++ C +S S + + A+ + + L KE+
Sbjct: 231 PKSRKAHNIDL-NGAVVIFDEAHNVEKTCEESTSFDLTPYDVASAINAVDRLLVEQAKEI 289
Query: 809 KEADSAKLREEYARLVEGLR 828
DS L GL+
Sbjct: 290 SHKDSVNEDVNVESLSSGLK 309
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 542 EFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLV 601
EF R + S + Q+ V I PDG +L S F+ R + + G +
Sbjct: 493 EFPVRLENSHVIERDQIFVSIIAQGPDGA--------HLSSAFDRRFVPENMASLGNTVA 544
Query: 602 DIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
+++ VVP G++ FF S+ +E + W G + ++ K +F+E
Sbjct: 545 NLSRVVPHGLLVFFPSFPLMEKTLEFWKANGHANRIENIKPMFVE 589
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEY--LTDNLTNL 890
+++ K DYG + D+RF +D R++LP W++ Y L D+ N+
Sbjct: 696 VIRHKEDYGAIFLCDQRFKSADARAQLPSWVRSYVRLCDSFGNV 739
>gi|300707205|ref|XP_002995821.1| hypothetical protein NCER_101193 [Nosema ceranae BRL01]
gi|239605041|gb|EEQ82150.1| hypothetical protein NCER_101193 [Nosema ceranae BRL01]
Length = 695
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 7/151 (4%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C++ D + + + ++ I ++ G+ G CPYF AR+ A I+ Y+YLLD
Sbjct: 169 CNYVNGKDRLAKR--VGQNIFDIEEIVREGKRCGGCPYFAARKLADDADIIFAPYNYLLD 226
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVG---NIQTLEGTLK 151
+ + EL+ +S+++ DEAHNID+VC S S+ + I+ V N L
Sbjct: 227 RNVRGNTAIELS-NSIIIIDEAHNIDDVCRSSGSIELTSNIIDIIVNELLNAVKKSAYLG 285
Query: 152 EMKEADSAKLREEYARLVEGLRDAQSARETD 182
E K D L E + +LV + S +T+
Sbjct: 286 ETK-GDYLILLELFRKLVFNVEKVTSFDKTN 315
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 7/151 (4%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C++ D + + + ++ I ++ G+ G CPYF AR+ A I+ Y+YLLD
Sbjct: 169 CNYVNGKDRLAKR--VGQNIFDIEEIVREGKRCGGCPYFAARKLADDADIIFAPYNYLLD 226
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVG---NIQTLEGTLK 806
+ + EL+ +S+++ DEAHNID+VC S S+ + I+ V N L
Sbjct: 227 RNVRGNTAIELS-NSIIIIDEAHNIDDVCRSSGSIELTSNIIDIIVNELLNAVKKSAYLG 285
Query: 807 EMKEADSAKLREEYARLVEGLRDAQSARETD 837
E K D L E + +LV + S +T+
Sbjct: 286 ETK-GDYLILLELFRKLVFNVEKVTSFDKTN 315
>gi|341883785|gb|EGT39720.1| hypothetical protein CAEBREN_25454 [Caenorhabditis brenneri]
Length = 810
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 63/106 (59%), Gaps = 5/106 (4%)
Query: 35 CDFYEKFDAVGREAP---LAPG-VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 90
C ++ KFDA + L G I ++G + +CPY+++RQ A++++ Y+
Sbjct: 171 CHYHNKFDACTTDKMTEILDTGEAMDIEDFVKLGTQNSICPYYMSRQRSETAELILLPYN 230
Query: 91 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTI 136
Y++DPK+ +L ++S+V+FDEAHN++++C + S ++ +I
Sbjct: 231 YIIDPKMRRRYKLDL-KNSIVIFDEAHNLESICESNASTELSSTSI 275
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 63/106 (59%), Gaps = 5/106 (4%)
Query: 690 CDFYEKFDAVGREAP---LAPG-VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 745
C ++ KFDA + L G I ++G + +CPY+++RQ A++++ Y+
Sbjct: 171 CHYHNKFDACTTDKMTEILDTGEAMDIEDFVKLGTQNSICPYYMSRQRSETAELILLPYN 230
Query: 746 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTI 791
Y++DPK+ +L ++S+V+FDEAHN++++C + S ++ +I
Sbjct: 231 YIIDPKMRRRYKLDL-KNSIVIFDEAHNLESICESNASTELSSTSI 275
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 35/136 (25%)
Query: 433 VFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN----AHPL 488
V FP+E Y Q +M + LD+K LE P+GTGKT SLL +A++N PL
Sbjct: 22 VKFPFE-PYECQRIFMKNVIDVLDSKLDAALESPTGTGKTLSLLCSTLAWVNREKETKPL 80
Query: 489 D----------------------VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINM 526
D + + Y SRT ++E+VV EL R ++K
Sbjct: 81 DFATWQTSGAGGAGTEDKLKKTFIPTIFYASRTHSQLEQVVHELNRTEYKWVKTT----- 135
Query: 527 TGLVLSSRKNLCIHSE 542
+L SR++ CI+ +
Sbjct: 136 ---ILGSREHFCINQK 148
>gi|197098236|ref|NP_001124929.1| regulator of telomere elongation helicase 1 [Pongo abelii]
gi|75042437|sp|Q5RE34.1|RTEL1_PONAB RecName: Full=Regulator of telomere elongation helicase 1
gi|55726407|emb|CAH89973.1| hypothetical protein [Pongo abelii]
Length = 1302
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 173 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 232
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 233 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDIIDQVLEEQTKTA 291
Query: 154 KEAD 157
++ +
Sbjct: 292 QQGE 295
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 173 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 232
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 233 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDIIDQVLEEQTKTA 291
Query: 809 KEAD 812
++ +
Sbjct: 292 QQGE 295
>gi|340059127|emb|CCC53502.1| putative helicase-like protein [Trypanosoma vivax Y486]
Length = 984
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKE--LARSSVV 111
V+ I L G + CPY+ AR + A + +Y YLLDP I + E L +++V
Sbjct: 273 VWDIEDLVSEGVGMQSCPYYAARDLVFFAHVNFATYQYLLDPIIRHECKMEAALKNNAIV 332
Query: 112 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 146
VFDEAHN+ +VC ++LS+ T++ + ++ L
Sbjct: 333 VFDEAHNVPHVCQEALSLETTTETLQLVISELEPL 367
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKE--LARSSVV 766
V+ I L G + CPY+ AR + A + +Y YLLDP I + E L +++V
Sbjct: 273 VWDIEDLVSEGVGMQSCPYYAARDLVFFAHVNFATYQYLLDPIIRHECKMEAALKNNAIV 332
Query: 767 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 801
VFDEAHN+ +VC ++LS+ T++ + ++ L
Sbjct: 333 VFDEAHNVPHVCQEALSLETTTETLQLVISELEPL 367
>gi|119595650|gb|EAW75244.1| hCG22751, isoform CRA_e [Homo sapiens]
Length = 1400
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 154 KEAD 157
++ +
Sbjct: 291 QQGE 294
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 809 KEAD 812
++ +
Sbjct: 291 QQGE 294
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 510 QIWVGVVPRGPDGA--------QLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + + ++ K LF+E
Sbjct: 562 SYPVMEKSLEFWRARDLARKMEALKPLFVE 591
>gi|378756742|gb|EHY66766.1| hypothetical protein NERG_00406 [Nematocida sp. 1 ERTm2]
Length = 690
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 35 CDFY----EKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 90
C +Y EK R L PGV+SI L G E CP++ R+ A I+ Y+
Sbjct: 136 CKYYRTPNEKEQERDRNISL-PGVFSIEDLVSAGGECNSCPFYYTRERQEKATIIFSPYN 194
Query: 91 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEG 148
Y++ +I+ + +L SV++ DEAHNID+VC + SV I R + + + T G
Sbjct: 195 YIVSERISAALKIDLT-GSVLIVDEAHNIDDVCRSTGSVDIKRADLASLISRLGTGSG 251
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 690 CDFY----EKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 745
C +Y EK R L PGV+SI L G E CP++ R+ A I+ Y+
Sbjct: 136 CKYYRTPNEKEQERDRNISL-PGVFSIEDLVSAGGECNSCPFYYTRERQEKATIIFSPYN 194
Query: 746 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEG 803
Y++ +I+ + +L SV++ DEAHNID+VC + SV I R + + + T G
Sbjct: 195 YIVSERISAALKIDLT-GSVLIVDEAHNIDDVCRSTGSVDIKRADLASLISRLGTGSG 251
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 68/124 (54%), Gaps = 12/124 (9%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
I + + YE +Y Q + + LD ++E P+GTGKT S+L +VA++N +P
Sbjct: 6 IKNYTINTEYE-LYEPQRKSIETILTCLDNGESGMIESPTGTGKTLSILEAVVAWVNKNP 64
Query: 488 --LDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFET 545
L+ ++ +RT+ + +++ L ++ K+ +N+ L+SR++LC++SE
Sbjct: 65 EKLEGGQIYVTTRTIKQASQLIAHLKKM-----KNAPMMNL----LASRRHLCLNSEVSK 115
Query: 546 RDDI 549
+DI
Sbjct: 116 SNDI 119
>gi|70917979|ref|XP_733039.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56504467|emb|CAH85165.1| hypothetical protein PC301436.00.0 [Plasmodium chabaudi chabaudi]
Length = 126
Score = 64.7 bits (156), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
I++ K DYGIMIF+D R+AR+DK+ KLP WI + + + NL+ V +SK++L M+Q
Sbjct: 32 IIRNKKDYGIMIFSDIRYARNDKKGKLPPWIIKCMDVSNINLTIGAGVSISKKFLLNMSQ 91
Query: 909 PFTREDMLGVALLSL 923
+ D ++ + L
Sbjct: 92 EYKETDQTKISQVIL 106
>gi|7012929|gb|AAF35243.1| helicase-like protein NHL [Homo sapiens]
Length = 1400
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 154 KEAD 157
++ +
Sbjct: 291 QQGE 294
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 809 KEAD 812
++ +
Sbjct: 291 QQGE 294
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 510 QIWVGVVPRGPDGA--------QLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + + ++ K LF+E
Sbjct: 562 SYPVMEKSLEFWRARDLARKMEALKPLFVE 591
>gi|15897254|ref|NP_341859.1| DNA helicase [Sulfolobus solfataricus P2]
gi|284174501|ref|ZP_06388470.1| DNA helicase [Sulfolobus solfataricus 98/2]
gi|384433767|ref|YP_005643125.1| DEAD/DEAH box helicase [Sulfolobus solfataricus 98/2]
gi|13813457|gb|AAK40649.1| DNA helicase [Sulfolobus solfataricus P2]
gi|261601921|gb|ACX91524.1| DEAD_2 domain protein [Sulfolobus solfataricus 98/2]
Length = 550
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 99/189 (52%), Gaps = 11/189 (5%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C+ E F+A +P V S+ KLKE G++LG CPY+ + I A +++ +Y YL
Sbjct: 99 CNGCEIFNASAVTVTDSPKV-SLNKLKEEGKKLGFCPYYSLLETIKTADVILLTYPYLFI 157
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV--GNIQTLEGTLKE 152
P + + VV+ DEAHNI+NV + ++N+R IE A+ + Q ++ L+
Sbjct: 158 PWLRESLDINW-EDYVVIVDEAHNIENVS-NIEEKKLNKRIIEMAISQSHSQNVKVILER 215
Query: 153 MKE-ADSAKLREEYARLVE--GLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHF 209
+KE + A E+ L+E L + + E +L+ DEI ++++ N + ++
Sbjct: 216 LKENVEKAVYSEDKYILIEKDKLDNILPSNEEIEILSEEY--DEI-RKIMIKNKTVSRNY 272
Query: 210 VGFLKRFIE 218
+G + RF +
Sbjct: 273 LGSILRFFD 281
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 5/123 (4%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C+ E F+A +P V S+ KLKE G++LG CPY+ + I A +++ +Y YL
Sbjct: 99 CNGCEIFNASAVTVTDSPKV-SLNKLKEEGKKLGFCPYYSLLETIKTADVILLTYPYLFI 157
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV--GNIQTLEGTLKE 807
P + + VV+ DEAHNI+NV + ++N+R IE A+ + Q ++ L+
Sbjct: 158 PWLRESLDINW-EDYVVIVDEAHNIENVS-NIEEKKLNKRIIEMAISQSHSQNVKVILER 215
Query: 808 MKE 810
+KE
Sbjct: 216 LKE 218
>gi|374674404|dbj|BAA83040.3| KIAA1088 protein, partial [Homo sapiens]
Length = 1400
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 154 KEAD 157
++ +
Sbjct: 291 QQGE 294
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 809 KEAD 812
++ +
Sbjct: 291 QQGE 294
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 510 QIWVGVVPRGPDGA--------QLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + + ++ K LF+E
Sbjct: 562 SYPVMEKSLEFWRARDLARKMEALKPLFVE 591
>gi|397477200|ref|XP_003809966.1| PREDICTED: regulator of telomere elongation helicase 1 isoform 2
[Pan paniscus]
Length = 1401
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 154 KEAD 157
++ +
Sbjct: 291 QQGE 294
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K
Sbjct: 232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290
Query: 809 KEAD 812
++ +
Sbjct: 291 QQGE 294
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 510 QIWVGVVPRGPDGA--------QLSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + + ++ K LF+E
Sbjct: 562 SYPVMEKSLEFWRARDLARKMEALKPLFVE 591
>gi|332030654|gb|EGI70342.1| Regulator of telomere elongation helicase 1-like protein
[Acromyrmex echinatior]
Length = 976
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
C ++ +A + V I L ++G++ CPYFLA++ +A IV Y+YLL
Sbjct: 176 TCFYFNNVEARKDDPVFKQEVLDIEDLVKVGQKHKCCPYFLAKELKQNADIVFMPYNYLL 235
Query: 94 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTI 136
DPK +L +++VV+ DEAHN++ VC ++ S++I+ I
Sbjct: 236 DPKTRRSQGIDL-QNTVVLLDEAHNVEKVCEEAASLQISSTDI 277
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
C ++ +A + V I L ++G++ CPYFLA++ +A IV Y+YLL
Sbjct: 176 TCFYFNNVEARKDDPVFKQEVLDIEDLVKVGQKHKCCPYFLAKELKQNADIVFMPYNYLL 235
Query: 749 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTI 791
DPK +L +++VV+ DEAHN++ VC ++ S++I+ I
Sbjct: 236 DPKTRRSQGIDL-QNTVVLLDEAHNVEKVCEEAASLQISSTDI 277
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S + TR+D I + G+ + + +C+VP G++ FF SY ++ W + G+ + +
Sbjct: 523 LNSSYNTRNDPKYIASLGRTVYNFSCIVPHGLLIFFPSYPIMKKCRDEWQNMGLWTQIAE 582
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRC 669
RK +++E +V E KI D C
Sbjct: 583 RKPIYVEPNSKDGFVNVMNEYYQKIKDPSC 612
Score = 42.0 bits (97), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 52/160 (32%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKT------------- 472
++I+D+ V FP++ YP Q YM ++ + L H +LE P+GTGKT
Sbjct: 4 VIINDIIVTFPFK-PYPVQEEYMKKVIECLQNGQHGVLESPTGTGKTLNLLCSSLSWLLT 62
Query: 473 --TSLLSLIVA----------------------------YMNAHPLDVTKLLYCSRTVPE 502
L + ++A + + + K++Y SRT +
Sbjct: 63 KKAQLQAQVIAGAIEKKDFGGNFFKYLTSGLEKAAGVPDNVQSFGWAIPKIIYASRTHSQ 122
Query: 503 IEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
+ + + EL + KH + VL SR LCIH E
Sbjct: 123 LSQAMYELKKT---SYKH-----VATAVLGSRDQLCIHPE 154
Score = 40.0 bits (92), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 528 GLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 577
G++ N ++S + TR+D I + G+ + + +C+VP G++ FF SY
Sbjct: 512 GVLSQGPDNHPLNSSYNTRNDPKYIASLGRTVYNFSCIVPHGLLIFFPSY 561
>gi|380013392|ref|XP_003690744.1| PREDICTED: regulator of telomere elongation helicase 1 homolog,
partial [Apis florea]
Length = 970
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 81/159 (50%), Gaps = 14/159 (8%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKE + CHS V+ R C +Y ++ + + I L
Sbjct: 155 VSKETNSSNKIYMCHS----KVKSR--------TCFYYNNVESRKDDPFFKQEILDIEDL 202
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G++ CPYFL+R+ +A I+ Y+Y+LD K + ++ ++++++FDEAHNI+
Sbjct: 203 VKAGQKFKCCPYFLSRELKQNADIIFMPYNYILDTKSRKIQGIDI-QNNIILFDEAHNIE 261
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQ-TLEGTLKEMKEADS 158
+C ++ S++I+ I + I +E K++++ ++
Sbjct: 262 KICEETASLQISSTDIAMCIDEITVVMEDMAKDIEQQNN 300
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 81/159 (50%), Gaps = 14/159 (8%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKE + CHS V+ R C +Y ++ + + I L
Sbjct: 155 VSKETNSSNKIYMCHS----KVKSR--------TCFYYNNVESRKDDPFFKQEILDIEDL 202
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
+ G++ CPYFL+R+ +A I+ Y+Y+LD K + ++ ++++++FDEAHNI+
Sbjct: 203 VKAGQKFKCCPYFLSRELKQNADIIFMPYNYILDTKSRKIQGIDI-QNNIILFDEAHNIE 261
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQ-TLEGTLKEMKEADS 813
+C ++ S++I+ I + I +E K++++ ++
Sbjct: 262 KICEETASLQISSTDIAMCIDEITVVMEDMAKDIEQQNN 300
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V I PDG L S F TR+D I + GQ + + +C+VP G++ FF
Sbjct: 510 QICVGILSRGPDGYS--------LNSSFNTRNDPKYIGSLGQTIFNFSCLVPYGLLVFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
SY ++ W + G+ + RK +++E Q
Sbjct: 562 SYPIMKKCKEEWQNTGLWTKIADRKPIYVEPQ 593
Score = 40.8 bits (94), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 528 GLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 577
G++ ++S F TR+D I + GQ + + +C+VP G++ FF SY
Sbjct: 514 GILSRGPDGYSLNSSFNTRNDPKYIGSLGQTIFNFSCLVPYGLLVFFPSY 563
>gi|4140689|gb|AAD04165.1| putative DNA helicase homolog [Gracilaria gracilis]
Length = 128
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 43/61 (70%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
+++ K DYGI+IFADKRF R+ RSKLPKWI ++L+ + +L A+ ++ +L MAQ
Sbjct: 43 VIRNKNDYGIVIFADKRFTRAKLRSKLPKWIAQFLSVDSLDLDLGTAIAEARTFLLDMAQ 102
Query: 909 P 909
P
Sbjct: 103 P 103
>gi|1666897|gb|AAB18751.1| CHL1 protein, partial [Homo sapiens]
Length = 556
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 369 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGV 428
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L RK +F E + A
Sbjct: 429 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 467
Score = 47.0 bits (110), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI A++VV
Sbjct: 35 EKQAACPFYNH-EQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIPAAQLVVL 92
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKA 139
Y LL L + VV+ DEAHN+ + SV ++ + +A
Sbjct: 93 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQA 143
Score = 47.0 bits (110), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI A++VV
Sbjct: 35 EKQAACPFYNH-EQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIPAAQLVVL 92
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKA 794
Y LL L + VV+ DEAHN+ + SV ++ + +A
Sbjct: 93 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQA 143
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
++ S N + F+ R+ ++ G++L ++ VVP GVVCFF SY YL V
Sbjct: 387 VICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQV 441
>gi|47212324|emb|CAF91262.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1212
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + + L + + L + G + +CPY+L+R A ++ Y+YL+D
Sbjct: 170 CPFYNNTEESSTDRDLTHSILDVEDLVKFGNKKRVCPYYLSRSLKQEADVIFMPYNYLVD 229
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 146
PK + EL +VV+FDEAHN++ C +S S + + A+ + L
Sbjct: 230 PKSRRAHNIEL-NGAVVIFDEAHNLEKTCEESTSFDLTPYEVASAIAAVDRL 280
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + + L + + L + G + +CPY+L+R A ++ Y+YL+D
Sbjct: 170 CPFYNNTEESSTDRDLTHSILDVEDLVKFGNKKRVCPYYLSRSLKQEADVIFMPYNYLVD 229
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 801
PK + EL +VV+FDEAHN++ C +S S + + A+ + L
Sbjct: 230 PKSRRAHNIEL-NGAVVIFDEAHNLEKTCEESTSFDLTPYEVASAIAAVDRL 280
>gi|345006076|ref|YP_004808929.1| DEAD/DEAH box helicase [halophilic archaeon DL31]
gi|344321702|gb|AEN06556.1| DEAD_2 domain protein [halophilic archaeon DL31]
Length = 719
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 8/143 (5%)
Query: 20 SSVRDRHKAGENIPVCDFYEKFDAVGREAP----LAPGVYSITKLKEMGRELGLCPYFLA 75
+ V DR + E +CD Y + + +G L GV + ++ E + GLC Y L
Sbjct: 161 ADVEDRLEETETANICDHY-RNNLLGDNQEFYDWLYDGVRTPEEIYEYADQQGLCGYELL 219
Query: 76 RQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVDSLSVRIN 132
++ + +VV +YH+LLDP I + L R V VFDEAHNI++ D S +
Sbjct: 220 KEGMEAVDLVVCNYHHLLDPNIREQFFRWLDRDPERVVTVFDEAHNIESAARDHASRSLT 279
Query: 133 RRTIEKAVGNIQTLEGTLKEMKE 155
T++ A+ + + + E E
Sbjct: 280 ENTLDSALSELDDEDDSRAEAAE 302
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 8/143 (5%)
Query: 675 SSVRDRHKAGENIPVCDFYEKFDAVGREAP----LAPGVYSITKLKEMGRELGLCPYFLA 730
+ V DR + E +CD Y + + +G L GV + ++ E + GLC Y L
Sbjct: 161 ADVEDRLEETETANICDHY-RNNLLGDNQEFYDWLYDGVRTPEEIYEYADQQGLCGYELL 219
Query: 731 RQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVDSLSVRIN 787
++ + +VV +YH+LLDP I + L R V VFDEAHNI++ D S +
Sbjct: 220 KEGMEAVDLVVCNYHHLLDPNIREQFFRWLDRDPERVVTVFDEAHNIESAARDHASRSLT 279
Query: 788 RRTIEKAVGNIQTLEGTLKEMKE 810
T++ A+ + + + E E
Sbjct: 280 ENTLDSALSELDDEDDSRAEAAE 302
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKL 493
FFPYE YP Q M + AL L E GTGKT S +L+ A +A D T +
Sbjct: 8 FFPYESPYPNQGEAMERIAAALGDGDDVLFEGAPGTGKTLS--ALVPALEHAREEDRT-V 64
Query: 494 LYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLC 538
+ + ++ + VEE AR N+E + +V + ++C
Sbjct: 65 VITTNVHQQMRQFVEE-ARAI------NDEEPLRAVVFKGKSSMC 102
>gi|212224189|ref|YP_002307425.1| ERCC2/XPD/Rad3-related DNA repair helicase [Thermococcus onnurineus
NA1]
gi|212009146|gb|ACJ16528.1| ERCC2/XPD/Rad3-related DNA repair helicase [Thermococcus onnurineus
NA1]
Length = 666
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 64/108 (59%), Gaps = 10/108 (9%)
Query: 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKL 493
+FPYE + P Q ++ + +A+ + ++E P+G GKT S+L+ I+ Y K+
Sbjct: 29 YFPYESLRPHQREFIELVNEAVKNGENAIIEAPTGFGKTVSVLAGILPYAIEMGY---KV 85
Query: 494 LYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHS 541
LY +RT ++++V+EEL + N + ++G+ L SRK+LC+HS
Sbjct: 86 LYLARTHRQMDRVIEELKAI-------NRKTPISGVELRSRKDLCLHS 126
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 12/136 (8%)
Query: 67 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIAN--VVSKELARSS-VVVFDEAHNIDNVC 123
L LCPY L R+ A ++V SY YLL P I + S ++ S +VVFDEAHN+ +
Sbjct: 188 LELCPYDLTRRIAEKANVIVASYLYLLSPTIRENFLSSLDIDYSDLIVVFDEAHNLPDQA 247
Query: 124 VDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDV 183
+ +LS R++ T+ +A+ E +E + A + + +E L + + RE DV
Sbjct: 248 ISALSDRLSIHTVNRAIKEAD-------EYREHEIANFLSIFGKGLEMLYE-EKLRERDV 299
Query: 184 VLANPVLPDEILQEVV 199
P+ P+ + VV
Sbjct: 300 HEV-PIQPELVFAHVV 314
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 722 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIAN--VVSKELARSS-VVVFDEAHNIDNVC 778
L LCPY L R+ A ++V SY YLL P I + S ++ S +VVFDEAHN+ +
Sbjct: 188 LELCPYDLTRRIAEKANVIVASYLYLLSPTIRENFLSSLDIDYSDLIVVFDEAHNLPDQA 247
Query: 779 VDSLSVRINRRTIEKAV 795
+ +LS R++ T+ +A+
Sbjct: 248 ISALSDRLSIHTVNRAI 264
>gi|182705254|sp|Q92771.3|DDX12_HUMAN RecName: Full=Putative ATP-dependent RNA helicase DDX12; AltName:
Full=CHL1-related protein 2; Short=hCHLR2; AltName:
Full=DEAD/H box protein 12
Length = 950
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ RD ++ G++L ++ VV GV
Sbjct: 663 VVEFSCGHVIPPDNILPLVICSGVSNQPLEFTFQKRDLPQMMDEVGRILCNLCGVVSGGV 722
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L RK +F E + A
Sbjct: 723 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 761
Score = 47.4 bits (111), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI A++VV
Sbjct: 329 EKQAACPFY-NHEQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIPAAQLVVL 386
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTL 146
Y LL L + VV+ DEAHN+ + SV ++ + +A +Q +
Sbjct: 387 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTTTSMHSVEVSGSQLCQAHSQLLQYM 445
Query: 147 EGTLKEMKEADSAKLRE 163
E K +K + L++
Sbjct: 446 ERYGKRLKAKNLMYLKQ 462
Score = 47.4 bits (111), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V + +L +G+E CPY+ +R AI A++VV
Sbjct: 329 EKQAACPFY-NHEQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIPAAQLVVL 386
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTL 801
Y LL L + VV+ DEAHN+ + SV ++ + +A +Q +
Sbjct: 387 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTTTSMHSVEVSGSQLCQAHSQLLQYM 445
Query: 802 EGTLKEMKEADSAKLRE 818
E K +K + L++
Sbjct: 446 ERYGKRLKAKNLMYLKQ 462
>gi|449542207|gb|EMD33187.1| hypothetical protein CERSUDRAFT_108361 [Ceriporiopsis subvermispora
B]
Length = 954
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
FE R D ++I GQ L++ A +VP G+V F SY +L SV +SW GI+ L +K L
Sbjct: 689 FERRSDQALIAEVGQTLLNFANIVPGGMVVFLPSYSFLHSVKSSWEASGIMGKLSAKKKL 748
Query: 644 FIETQDALDSRSV 656
F+E Q++ +V
Sbjct: 749 FMEPQESTQVEAV 761
>gi|403282703|ref|XP_003932780.1| PREDICTED: LOW QUALITY PROTEIN: regulator of telomere elongation
helicase 1 [Saimiri boliviensis boliviensis]
Length = 1604
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSRHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 128
K S +L + +VV+FDEAHN++ +C +S S
Sbjct: 232 AKSRRAHSIDL-KGTVVIFDEAHNVEKMCEESAS 264
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSRHRVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 783
K S +L + +VV+FDEAHN++ +C +S S
Sbjct: 232 AKSRRAHSIDL-KGTVVIFDEAHNVEKMCEESAS 264
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 510 QIWVGVVPRGPDGA--------QLSSAFDRRFSEECLSSLGKALGNIARVVPCGLLVFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
SY +E + W + + ++ K LF+E +
Sbjct: 562 SYPVMEKSLEFWRARDLARKIEALKPLFVEPR 593
>gi|345487716|ref|XP_001605873.2| PREDICTED: Fanconi anemia group J protein homolog [Nasonia
vitripennis]
Length = 950
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Query: 55 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 114
+ I L ++G++ CPYF AR + A I+ Y+YL+DP I + L VV+ D
Sbjct: 374 WDIEDLVDLGKQEKACPYFAARALMAEADIIFCPYNYLIDPVIRETMKINL-NGDVVIVD 432
Query: 115 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEY-ARLVEGLR 173
EAHNI+++C D S + +A+ + + + L ++ +S KL E+Y + +++ ++
Sbjct: 433 EAHNIESICRDVGSADFREDNLGEAIEDCKLVANLL--VRNNESYKLLEQYISSMLKMIQ 490
Query: 174 DAQSARETD 182
+ Q + T+
Sbjct: 491 EQQLPQSTN 499
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Query: 710 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 769
+ I L ++G++ CPYF AR + A I+ Y+YL+DP I + L VV+ D
Sbjct: 374 WDIEDLVDLGKQEKACPYFAARALMAEADIIFCPYNYLIDPVIRETMKINL-NGDVVIVD 432
Query: 770 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEY-ARLVEGLR 828
EAHNI+++C D S + +A+ + + + L ++ +S KL E+Y + +++ ++
Sbjct: 433 EAHNIESICRDVGSADFREDNLGEAIEDCKLVANLL--VRNNESYKLLEQYISSMLKMIQ 490
Query: 829 DAQSARETD 837
+ Q + T+
Sbjct: 491 EQQLPQSTN 499
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 66/164 (40%), Gaps = 54/164 (32%)
Query: 423 AMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
M +I +PV FP Y Q + M + K K HCLLE P+G+GKT +LL + +
Sbjct: 170 GMPPVIAGVPVKFPVS-PYRSQISVMNAVIKGCKGKEHCLLESPTGSGKTLALLCAALGW 228
Query: 483 M----NAHPLD-----------------------------------------VTKLLYCS 497
+H LD + K+ Y S
Sbjct: 229 QESFEQSHLLDAAKKLRNHDPDDPSGLCQPGKSVDDWKAIEFDETKEANEKKIPKIYYGS 288
Query: 498 RTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHS 541
RT +IE+V+ E R Y K NMT +LSSR++ CI S
Sbjct: 289 RTHKQIEQVIREF-RKTAYAHK-----NMT--ILSSREHTCIQS 324
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 34/161 (21%)
Query: 597 GQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSV 656
G+L++D+ VP GV+CFF+SY + S + W + I LQ+ K + E + D +
Sbjct: 729 GRLVLDVCQTVPHGVLCFFSSYSMMLSQIDRWKETDIWYELQQCKHIVQEPRSNNDLEDI 788
Query: 657 SKE-RD------------------------GKIVDGRCHSLTSSSVRDRHKAG-----EN 686
+E RD GK+ +G + + R G +N
Sbjct: 789 MREFRDVIRETADREAACGINGALLFAVFRGKVAEGI--DFSDNEARAVLTIGIPYAVQN 846
Query: 687 IPVCDFYEKFDAVGREAPLAPG--VYSITKLKEMGRELGLC 725
P +++ + R L PG YS+ + + + LG C
Sbjct: 847 DPQVKLKREYNDMHRNKGLLPGGEWYSVQAYRALNQALGRC 887
>gi|395506651|ref|XP_003757644.1| PREDICTED: regulator of telomere elongation helicase 1 [Sarcophilus
harrisii]
Length = 1361
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E L + I L + G +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSTEKELVTPILDIEDLVKGGNRHKVCPYYLSRTLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 128
K + +L + +VV+FDEAHN++ VC +S S
Sbjct: 232 SKTRRAHNIDL-KGTVVIFDEAHNVEKVCEESAS 264
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E L + I L + G +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSTEKELVTPILDIEDLVKGGNRHKVCPYYLSRTLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 783
K + +L + +VV+FDEAHN++ VC +S S
Sbjct: 232 SKTRRAHNIDL-KGTVVIFDEAHNVEKVCEESAS 264
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V I PDGV +L S ++ R + + G+ + +IA VVP G++ FF
Sbjct: 510 QIWVGIVPKGPDGV--------FLSSAYDKRFSEECLSSLGKTIGNIARVVPHGLLIFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W D +++ K +F+E
Sbjct: 562 SYPVMEKSLEYWRDHDFARKIEELKPVFVE 591
>gi|118383994|ref|XP_001025150.1| DNA repair helicase (rad3) [Tetrahymena thermophila]
gi|89306917|gb|EAS04905.1| DNA repair helicase (rad3) [Tetrahymena thermophila SB210]
Length = 1032
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 18/141 (12%)
Query: 412 PCLLPMVRENYAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGK 471
P L ++ ++ L I+++ V+FP++ Y Q YM + K L + H LLE P+GTGK
Sbjct: 52 PIHLNILHKDKHTKLNINNIEVYFPHK-PYDVQVVYMESVIKCLQERTHGLLESPTGTGK 110
Query: 472 TTSLLSLIVAYMNAH--------PLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEE 523
T S+L + ++ + +++YCSRT +I++VV+E+ + +
Sbjct: 111 TLSMLCACLGWLQQRREQQQGIKDIIPNRIIYCSRTHSQIQQVVKEIKT-----TAYQPK 165
Query: 524 INMTGLVLSSRKNLCIHSEFE 544
I +V SR+ CI EF+
Sbjct: 166 I----IVQGSREQYCIKKEFQ 182
Score = 43.1 bits (100), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I L+ G CP++ ++ ++ Y+YLLD + N + + +++V++FDEA
Sbjct: 227 IEDLRSDGYNNNYCPFYHTQKVNNAVDVLFLPYNYLLDRNVMNQANINI-KNAVIIFDEA 285
Query: 117 HNIDNVCVDSLSVRINRRTI 136
HNI + S+ +N ++
Sbjct: 286 HNIHKSAEEGYSLFLNYSSL 305
Score = 43.1 bits (100), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I L+ G CP++ ++ ++ Y+YLLD + N + + +++V++FDEA
Sbjct: 227 IEDLRSDGYNNNYCPFYHTQKVNNAVDVLFLPYNYLLDRNVMNQANINI-KNAVIIFDEA 285
Query: 772 HNIDNVCVDSLSVRINRRTI 791
HNI + S+ +N ++
Sbjct: 286 HNIHKSAEEGYSLFLNYSSL 305
>gi|401425034|ref|XP_003877002.1| helicase-like protein [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322493246|emb|CBZ28531.1| helicase-like protein [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 1117
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 8/111 (7%)
Query: 31 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKEM------GRELGLCPYFLARQAIIHAKI 84
++ +C+ +K+D + A P + ++ +M G +CPY+ AR +A +
Sbjct: 272 SMGLCEMVDKYDELSCSAIAGPIGHQRGQIWDMEDLVLEGTSRHMCPYYAARDLAFYADV 331
Query: 85 VVYSYHYLLDPKIANVVSKELA--RSSVVVFDEAHNIDNVCVDSLSVRINR 133
+Y YLLDP I + E A ++VVVFDEAHN+ VC D+LS+ R
Sbjct: 332 NFCTYPYLLDPLIRHETRMEAALKNNAVVVFDEAHNVAAVCQDALSLECPR 382
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 8/111 (7%)
Query: 686 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKEM------GRELGLCPYFLARQAIIHAKI 739
++ +C+ +K+D + A P + ++ +M G +CPY+ AR +A +
Sbjct: 272 SMGLCEMVDKYDELSCSAIAGPIGHQRGQIWDMEDLVLEGTSRHMCPYYAARDLAFYADV 331
Query: 740 VVYSYHYLLDPKIANVVSKELA--RSSVVVFDEAHNIDNVCVDSLSVRINR 788
+Y YLLDP I + E A ++VVVFDEAHN+ VC D+LS+ R
Sbjct: 332 NFCTYPYLLDPLIRHETRMEAALKNNAVVVFDEAHNVAAVCQDALSLECPR 382
>gi|403369956|gb|EJY84835.1| Isoform 4 of Regulator of telomere elongation helicase 1 [Oxytricha
trifallax]
Length = 1415
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 17/129 (13%)
Query: 421 NYAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIV 480
N D V+FP++ Y Q +M ++ K L+ + LLE P+GTGKT SLL +
Sbjct: 275 NRQFQFQTDGHTVYFPFK-PYSCQVDFMSKVIKGLNQNENALLESPTGTGKTLSLLCASL 333
Query: 481 AYM-------NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSS 533
A++ DV +++Y SRT ++ +V +EL N N ++L S
Sbjct: 334 AWLKLQREKVGIQSGDVPRIIYTSRTHSQLAQVQKEL---------RNTAYNPRSVILGS 384
Query: 534 RKNLCIHSE 542
R +LC+H E
Sbjct: 385 RDHLCVHPE 393
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 26 HKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIV 85
KA + I C F + D + P Y I +L E+ ++ CPYF ++ + A ++
Sbjct: 407 QKAQKAIDPCIFGKNRDIALTKLSWEP--YDIEELHEIATKMIFCPYFASKDRMQGADVI 464
Query: 86 VYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 145
Y+YL+D KI + S+++FDEAHN + D S +N + +E++ +Q
Sbjct: 465 FMPYNYLIDDKIRENFDINY-KGSIIIFDEAHNASSTAEDVASFELNTKLLEQSEFELQK 523
Query: 146 LE 147
L+
Sbjct: 524 LQ 525
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 681 HKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIV 740
KA + I C F + D + P Y I +L E+ ++ CPYF ++ + A ++
Sbjct: 407 QKAQKAIDPCIFGKNRDIALTKLSWEP--YDIEELHEIATKMIFCPYFASKDRMQGADVI 464
Query: 741 VYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 800
Y+YL+D KI + S+++FDEAHN + D S +N + +E++ +Q
Sbjct: 465 FMPYNYLIDDKIRENFDINY-KGSIIIFDEAHNASSTAEDVASFELNTKLLEQSEFELQK 523
Query: 801 LE 802
L+
Sbjct: 524 LQ 525
Score = 46.6 bits (109), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 555 YGQLLVDIACVVPDGVVCFFTSYLYLESVFE----TRDDISVIRNYGQLLVDIACVVPDG 610
+ Q L + + P+ V + ES+F RD+ + + + G + IA V P G
Sbjct: 769 FNQRLENPHVISPEQVSINILTKGVRESLFNFSFNNRDNENTMVDLGMSIASIAQVTPGG 828
Query: 611 VVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
++ FF SY ++ W +Q + +++K K L++E +D
Sbjct: 829 MLVFFPSYRVMQRCEEVWNNQKVRQHIEKHKKLYMEPKD 867
>gi|326932020|ref|XP_003212120.1| PREDICTED: regulator of telomere elongation helicase 1-like
[Meleagris gallopavo]
Length = 1136
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
C FY + E L + I L + G + CPY+L+R A I+ Y+YLL
Sbjct: 152 ACHFYNNVEEKSTEKGLMDSIMDIEDLVKNGSKHRACPYYLSRSLKQQADIIFMPYNYLL 211
Query: 94 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 140
D K + EL + +V++FDEAHN++ +C +S S + + A+
Sbjct: 212 DAKSRQAHNIEL-KGTVIIFDEAHNVERLCEESSSFDLTAYDLASAI 257
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
C FY + E L + I L + G + CPY+L+R A I+ Y+YLL
Sbjct: 152 ACHFYNNVEEKSTEKGLMDSIMDIEDLVKNGSKHRACPYYLSRSLKQQADIIFMPYNYLL 211
Query: 749 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 795
D K + EL + +V++FDEAHN++ +C +S S + + A+
Sbjct: 212 DAKSRQAHNIEL-KGTVIIFDEAHNVERLCEESSSFDLTAYDLASAI 257
Score = 44.3 bits (103), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 9/136 (6%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
QL V I PDG V L S +E R + + G+ + ++ VVP G++ FF
Sbjct: 492 QLWVGIIPKGPDGTV--------LNSTYERRFSEDYLSSLGKTIGNLVRVVPHGLLVFFP 543
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSS 676
SY ++ + W + +++ K +F+E ++ V GKI + + +
Sbjct: 544 SYPVMDKSLEYWREHDFAKRIEEVKPMFVEPRNKGSFAEVIDAYYGKIACPKSNGAAFLA 603
Query: 677 VRDRHKAGENIPVCDF 692
V R KA E + D
Sbjct: 604 V-CRGKASEGLDFADM 618
>gi|355717481|gb|AES05950.1| regulator of telomere elongation helicase 1 [Mustela putorius furo]
Length = 1114
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L G + LCPY+L+R A I+ Y+YLLD
Sbjct: 91 CHFYNNVEEKSLERELATTILDIEDLVRSGNKHSLCPYYLSRNLKQQADIIFMPYNYLLD 150
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 154
K +L + +VV+FDEAHN++ +C ++ S + T + L+ L+E
Sbjct: 151 AKSRRAHGIDL-KGTVVIFDEAHNVEKMCEETASFDL---TPHDLASGLDVLDQLLEEQT 206
Query: 155 EA 156
+A
Sbjct: 207 KA 208
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L G + LCPY+L+R A I+ Y+YLLD
Sbjct: 91 CHFYNNVEEKSLERELATTILDIEDLVRSGNKHSLCPYYLSRNLKQQADIIFMPYNYLLD 150
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 809
K +L + +VV+FDEAHN++ +C ++ S + T + L+ L+E
Sbjct: 151 AKSRRAHGIDL-KGTVVIFDEAHNVEKMCEETASFDL---TPHDLASGLDVLDQLLEEQT 206
Query: 810 EA 811
+A
Sbjct: 207 KA 208
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V I PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 428 QIWVGIVPKGPDGA--------QLSSAFDKRFSDVCLSSLGKALGNIARVVPHGLLVFFP 479
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W L+ K +F+E
Sbjct: 480 SYPVMEKSLEFWRAHDFARKLEALKPVFVE 509
>gi|72386955|ref|XP_843902.1| helicase [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|62359030|gb|AAX79479.1| helicase, putative [Trypanosoma brucei]
gi|70800434|gb|AAZ10343.1| helicase, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 963
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 19/128 (14%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY--- 482
+ ID + V FP+ YP Q YM + AL + LLE P+GTGKT LL ++A+
Sbjct: 4 VFIDGVEVSFPFA-PYPVQEEYMRSVIYALKGSHNALLESPTGTGKTLCLLCGVLAWLDE 62
Query: 483 -----MNAHPLDVTKLL---YCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSR 534
+N+ D T LL YCSRT ++ +V+ E R +++ +M VL SR
Sbjct: 63 RRICFLNSGISDRTSLLRVVYCSRTHAQLSQVIREFKR-----TRYSSIFSMA--VLGSR 115
Query: 535 KNLCIHSE 542
++C++S+
Sbjct: 116 DHMCLNSQ 123
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 35 CDFYEKFDA--VGR-EAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 91
C FY ++A GR + P ++ + L GR+ G CPY+ R A A +V Y+Y
Sbjct: 146 CRFYRGYEARAAGRKDFPDELWIHDMEDLVSEGRKCGFCPYYYERDAAKDADVVFLPYNY 205
Query: 92 LLDPKIANVVSKELARSSVVVFDEAHNIDNV 122
+ D + EL+ SV++ DEAHN+ +V
Sbjct: 206 VFDVSFRKQLPFELS-GSVLIVDEAHNLPSV 235
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 690 CDFYEKFDA--VGR-EAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
C FY ++A GR + P ++ + L GR+ G CPY+ R A A +V Y+Y
Sbjct: 146 CRFYRGYEARAAGRKDFPDELWIHDMEDLVSEGRKCGFCPYYYERDAAKDADVVFLPYNY 205
Query: 747 LLDPKIANVVSKELARSSVVVFDEAHNIDNV 777
+ D + EL+ SV++ DEAHN+ +V
Sbjct: 206 VFDVSFRKQLPFELS-GSVLIVDEAHNLPSV 235
>gi|402467806|gb|EJW03051.1| DNA repair helicase (rad3) [Edhazardia aedis USNM 41457]
Length = 704
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C ++E D++ + L+ + I +L + G+ + CPYF R+ A I+ Y+YL+D
Sbjct: 144 CKYFENTDSLAQN--LSSKIMDIEELAKAGKTMAGCPYFAMRKLQATADIIFAPYNYLVD 201
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVC 123
P I ++ EL +++VV+ DEAHNI++ C
Sbjct: 202 PSIRASLNIEL-KNAVVIVDEAHNIEDFC 229
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C ++E D++ + L+ + I +L + G+ + CPYF R+ A I+ Y+YL+D
Sbjct: 144 CKYFENTDSLAQN--LSSKIMDIEELAKAGKTMAGCPYFAMRKLQATADIIFAPYNYLVD 201
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVC 778
P I ++ EL +++VV+ DEAHNI++ C
Sbjct: 202 PSIRASLNIEL-KNAVVIVDEAHNIEDFC 229
>gi|410046333|ref|XP_003952169.1| PREDICTED: LOW QUALITY PROTEIN: putative ATP-dependent RNA helicase
DDX12-like [Pan troglodytes]
Length = 920
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ RD ++ G++L ++ VV GV
Sbjct: 633 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRDLPQMMDEVGRILCNLCGVVSGGV 692
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L RK +F E + A
Sbjct: 693 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 731
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 15/166 (9%)
Query: 8 KIVDGRCHSLTSSSVRDRHKAG-------ENIPVCDFYEKFDAVG--REAPLAPGVYSIT 58
++++ RC + S R K G E C FY + +G R+ LA V I
Sbjct: 272 QLINDRCVDMQRS--RHEKKKGAEXRRRQEKQAACPFY-NHEQMGLLRDEALAE-VKDIE 327
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+L +G+E CPY+ +R AI A++VV Y LL L + VV+ DEAHN
Sbjct: 328 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAHN 386
Query: 119 IDNVCVDSLSVRINRRTIEKAVGN-IQTLEGTLKEMKEADSAKLRE 163
+ + SV ++ + +A +Q +E K +K + L++
Sbjct: 387 LIDTITGMHSVEVSGSQLCQAHSQLLQYMERYGKRLKAKNLMYLKQ 432
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 15/166 (9%)
Query: 663 KIVDGRCHSLTSSSVRDRHKAG-------ENIPVCDFYEKFDAVG--REAPLAPGVYSIT 713
++++ RC + S R K G E C FY + +G R+ LA V I
Sbjct: 272 QLINDRCVDMQRS--RHEKKKGAEXRRRQEKQAACPFY-NHEQMGLLRDEALAE-VKDIE 327
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
+L +G+E CPY+ +R AI A++VV Y LL L + VV+ DEAHN
Sbjct: 328 QLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAHN 386
Query: 774 IDNVCVDSLSVRINRRTIEKAVGN-IQTLEGTLKEMKEADSAKLRE 818
+ + SV ++ + +A +Q +E K +K + L++
Sbjct: 387 LIDTITGMHSVEVSGSQLCQAHSQLLQYMERYGKRLKAKNLMYLKQ 432
>gi|357631598|gb|EHJ79067.1| FancJ-like protein [Danaus plexippus]
Length = 830
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 52 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 111
P +S+ L +GR+ CPY+ AR+ A IV Y YL++P I + L ++VV
Sbjct: 283 PRAFSLETLLSVGRKKKACPYYAARKMAAVAHIVFCPYSYLIEPAIRKSMQINL-ENNVV 341
Query: 112 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYA 166
+ DEAHNI+++C ++ + + +E A LKEMK A S + + A
Sbjct: 342 IIDEAHNIEDICREAATFTFTKLQMENA----------LKEMKAASSFRFANDEA 386
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 707 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 766
P +S+ L +GR+ CPY+ AR+ A IV Y YL++P I + L ++VV
Sbjct: 283 PRAFSLETLLSVGRKKKACPYYAARKMAAVAHIVFCPYSYLIEPAIRKSMQINL-ENNVV 341
Query: 767 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYA 821
+ DEAHNI+++C ++ + + +E A LKEMK A S + + A
Sbjct: 342 IIDEAHNIEDICREAATFTFTKLQMENA----------LKEMKAASSFRFANDEA 386
Score = 40.4 bits (93), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 571 VCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYD 630
+C + Y SV +DD+ G+++ + V P GV+CF SY + +V W
Sbjct: 602 ICCISKYT---SVSNVQDDL------GEMVYGVCDVTPHGVLCFLPSYRLMNLLVKRWRY 652
Query: 631 QGIIDNLQKRKLLFIET 647
+ + L+ +K +F+E+
Sbjct: 653 SHLWERLEAKKHVFVES 669
>gi|348682926|gb|EGZ22742.1| hypothetical protein PHYSODRAFT_330481 [Phytophthora sojae]
Length = 873
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 6/134 (4%)
Query: 9 IVDGRCHSLTSSSVRDRHKAG--ENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRE 66
+V+ +C +L R R AG E+ C F + + R AP V+ I + +
Sbjct: 279 LVNEKCQALRMEKER-RRTAGDMEDEGGCPFSQT--SFSRLRARAPQVWDIEDITKEAST 335
Query: 67 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 126
C YF ++ A+ A IV Y+Y+LDP I V L +++VV DEAHN+++ C
Sbjct: 336 CDECAYFFSKSALEEAHIVFCPYNYVLDPAIRKAVGINL-HNAIVVLDEAHNVEDTCRSG 394
Query: 127 LSVRINRRTIEKAV 140
S+ + + AV
Sbjct: 395 ASLELTEHMLTSAV 408
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 6/134 (4%)
Query: 664 IVDGRCHSLTSSSVRDRHKAG--ENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRE 721
+V+ +C +L R R AG E+ C F + + R AP V+ I + +
Sbjct: 279 LVNEKCQALRMEKER-RRTAGDMEDEGGCPFSQT--SFSRLRARAPQVWDIEDITKEAST 335
Query: 722 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 781
C YF ++ A+ A IV Y+Y+LDP I V L +++VV DEAHN+++ C
Sbjct: 336 CDECAYFFSKSALEEAHIVFCPYNYVLDPAIRKAVGINL-HNAIVVLDEAHNVEDTCRSG 394
Query: 782 LSVRINRRTIEKAV 795
S+ + + AV
Sbjct: 395 ASLELTEHMLTSAV 408
Score = 46.2 bits (108), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 12/103 (11%)
Query: 556 GQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNY------------GQLLVDI 603
G+L VD + V +++ ++ ++ +I Y G LL+
Sbjct: 542 GELGVDFPIRLESNHVVNMRKQVFIGAIMNGPGNVDLISTYKNQQKFQYQDSMGFLLLQY 601
Query: 604 ACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
A V+P G++ FF SY + + A W GI D L K K +F E
Sbjct: 602 AQVIPGGILMFFPSYALMHILKARWQRTGIWDQLGKHKRMFWE 644
>gi|261327010|emb|CBH09985.1| helicase, putative [Trypanosoma brucei gambiense DAL972]
Length = 963
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 19/128 (14%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY--- 482
+ ID + V FP+ YP Q YM + AL + LLE P+GTGKT LL ++A+
Sbjct: 4 VFIDGVEVSFPFA-PYPVQEEYMRSVIYALKGSHNALLESPTGTGKTLCLLCGVLAWLDE 62
Query: 483 -----MNAHPLDVTKLL---YCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSR 534
+N+ D T LL YCSRT ++ +V+ E R +++ +M VL SR
Sbjct: 63 RRICFLNSGISDRTSLLRVVYCSRTHAQLSQVIREFKR-----TRYSSIFSMA--VLGSR 115
Query: 535 KNLCIHSE 542
++C++S+
Sbjct: 116 DHMCLNSQ 123
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 35 CDFYEKFDA--VGR-EAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 91
C FY ++A GR + P ++ + L GR+ G CPY+ R A A +V Y+Y
Sbjct: 146 CRFYRGYEARAAGRKDFPDELWIHDMEDLVSEGRKCGFCPYYYERDAAKDADVVFLPYNY 205
Query: 92 LLDPKIANVVSKELARSSVVVFDEAHNIDNV 122
+ D + EL+ SV++ DEAHN+ +V
Sbjct: 206 VFDVSFRKQLPFELS-GSVLIVDEAHNLPSV 235
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 690 CDFYEKFDA--VGR-EAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
C FY ++A GR + P ++ + L GR+ G CPY+ R A A +V Y+Y
Sbjct: 146 CRFYRGYEARAAGRKDFPDELWIHDMEDLVSEGRKCGFCPYYYERDAAKDADVVFLPYNY 205
Query: 747 LLDPKIANVVSKELARSSVVVFDEAHNIDNV 777
+ D + EL+ SV++ DEAHN+ +V
Sbjct: 206 VFDVSFRKQLPFELS-GSVLIVDEAHNLPSV 235
>gi|195420015|ref|XP_002060745.1| GK24076 [Drosophila willistoni]
gi|195441759|ref|XP_002068656.1| GK23573 [Drosophila willistoni]
gi|194156830|gb|EDW71731.1| GK24076 [Drosophila willistoni]
gi|194164741|gb|EDW79642.1| GK23573 [Drosophila willistoni]
Length = 216
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 12/119 (10%)
Query: 427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM--- 483
+I +PV FP+E Y Q A+M ++ L + +LE P+GTGKT SLL L +A++
Sbjct: 5 IIAGIPVHFPFE-PYEVQRAFMEKVIICLRDGTNGVLESPTGTGKTLSLLCLSLAWIRTR 63
Query: 484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
+ V K++Y SRT ++ + + EL R + M +VL SR LCIH E
Sbjct: 64 QSEQQGVPKVIYASRTHSQLTQAMRELKR--------SAYAGMRSVVLGSRDQLCIHPE 114
Score = 42.7 bits (99), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 51 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDP 95
P + I L ++G++L +CPYF +++ + A I Y+YLLDP
Sbjct: 154 GPSIMDIEDLVKVGQKLKMCPYFASKKLVNDADITFMPYNYLLDP 198
Score = 42.7 bits (99), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 706 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDP 750
P + I L ++G++L +CPYF +++ + A I Y+YLLDP
Sbjct: 154 GPSIMDIEDLVKVGQKLKMCPYFASKKLVNDADITFMPYNYLLDP 198
>gi|351714866|gb|EHB17785.1| Regulator of telomere elongation helicase 1, partial
[Heterocephalus glaber]
Length = 1184
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E L + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELVTPILDIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE + +
Sbjct: 232 AKSRKAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDVASGLDAIGQVLEEQTRVV 290
Query: 154 KEAD 157
++++
Sbjct: 291 QQSE 294
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E L + I L + G + +CPY+L+R A I+ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELVTPILDIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE + +
Sbjct: 232 AKSRKAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDVASGLDAIGQVLEEQTRVV 290
Query: 809 KEAD 812
++++
Sbjct: 291 QQSE 294
Score = 47.0 bits (110), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
QL V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 504 QLWVGVIPRGPDGA--------ELSSAFDKRFSEECLSSLGKTLGNIARVVPHGLLVFFP 555
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E+ +A W + + ++ K LF+E
Sbjct: 556 SYPVMENSLAFWRARDLARKVEVLKPLFVE 585
>gi|431894622|gb|ELK04422.1| Regulator of telomere elongation helicase 1 [Pteropus alecto]
Length = 1198
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E LA + I L + G + LCPY+LAR A IV Y+YLLD
Sbjct: 171 CHFYNNVEEKSLEQELATPILDIEDLVKSGNKHRLCPYYLARNLKQQADIVFMPYNYLLD 230
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 140
K S +L + +VV+FDEAHN+ +++ +R + E++
Sbjct: 231 AKSRRAHSIDL-KGTVVIFDEAHNVPPAPRNTVCLRSQEKMCEESA 275
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E LA + I L + G + LCPY+LAR A IV Y+YLLD
Sbjct: 171 CHFYNNVEEKSLEQELATPILDIEDLVKSGNKHRLCPYYLARNLKQQADIVFMPYNYLLD 230
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 795
K S +L + +VV+FDEAHN+ +++ +R + E++
Sbjct: 231 AKSRRAHSIDL-KGTVVIFDEAHNVPPAPRNTVCLRSQEKMCEESA 275
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V I PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 521 QIWVGIVPKGPDGT--------QLSSAFDKRFSDECLSSLGKALGNIARVVPHGLLVFFP 572
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + L+ K LF+E
Sbjct: 573 SYPVMEKSLEFWRARDFASKLEALKPLFVE 602
>gi|242003120|ref|XP_002422617.1| regulator of telomere elongation helicase 1 rtel1, putative
[Pediculus humanus corporis]
gi|212505418|gb|EEB09879.1| regulator of telomere elongation helicase 1 rtel1, putative
[Pediculus humanus corporis]
Length = 1016
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 78/145 (53%), Gaps = 9/145 (6%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V I L +G+ G+CPYFLA++A A I++ Y+Y++D + +L ++ V++F
Sbjct: 187 VLDIEDLVSIGKSCGICPYFLAKRASETADILLLPYNYIIDRESRESNGLQL-QNDVIIF 245
Query: 114 DEAHNIDNVCVD-------SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYA 166
DE HN+ + C + SL V I + I+ + ++ L L E +E D +K
Sbjct: 246 DEGHNVPSTCEESYEFSFTSLDVAIGIKNIQDVMLSLSKLTEDLIEDEEIDVSKHVSNSM 305
Query: 167 RLVEGLRDAQSARETDVVLANPVLP 191
+VE L+ +SA +++ +N +LP
Sbjct: 306 MMVEMLQKLESAL-SEMNASNELLP 329
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 78/145 (53%), Gaps = 9/145 (6%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V I L +G+ G+CPYFLA++A A I++ Y+Y++D + +L ++ V++F
Sbjct: 187 VLDIEDLVSIGKSCGICPYFLAKRASETADILLLPYNYIIDRESRESNGLQL-QNDVIIF 245
Query: 769 DEAHNIDNVCVD-------SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYA 821
DE HN+ + C + SL V I + I+ + ++ L L E +E D +K
Sbjct: 246 DEGHNVPSTCEESYEFSFTSLDVAIGIKNIQDVMLSLSKLTEDLIEDEEIDVSKHVSNSM 305
Query: 822 RLVEGLRDAQSARETDVVLANPVLP 846
+VE L+ +SA +++ +N +LP
Sbjct: 306 MMVEMLQKLESAL-SEMNASNELLP 329
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
C VP ++ + + ++ ++ R+D + + G L ++ +PDG++ F+SY ++S
Sbjct: 465 CQVPFVILGTGVNNVKMDGAYKNRNDPKYVSSLGMSLTNLIASIPDGILLLFSSYTMMQS 524
Query: 624 VVASW-YDQGIIDNLQKRKLLFIETQD 649
+ SW D GI L K +F+E ++
Sbjct: 525 LKESWEKDLGIWTRLNSLKRVFVEPRN 551
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 433 VFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
V FPY Y Q +YM ++ LD K H +LE P+GTGKT L + + A+
Sbjct: 11 VSFPYPIPYDIQKSYMNKVLTCLDEKTHAVLESPTGTGKTLCLFAPVTAW 60
>gi|296211273|ref|XP_002752340.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Callithrix jacchus]
Length = 903
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G +L ++ VVP GV
Sbjct: 641 VVEFSCGHVIPPDNILPLVICSGISSQPLEFTFQKRELPQMMDEAGGILCNLCGVVPGGV 700
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
VCFF SY YL V W G++D L RK +F E
Sbjct: 701 VCFFPSYEYLRQVHTHWEKGGLLDRLAARKKIFQE 735
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTL 146
Y LL L + VV+ DEAHN+ + SV ++ + +A +Q +
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAYSQLLQYM 426
Query: 147 EGTLKEMKEADSAKLRE 163
E K +K + L++
Sbjct: 427 ERYSKRLKAKNLMYLKQ 443
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTL 801
Y LL L + VV+ DEAHN+ + SV ++ + +A +Q +
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAYSQLLQYM 426
Query: 802 EGTLKEMKEADSAKLRE 818
E K +K + L++
Sbjct: 427 ERYSKRLKAKNLMYLKQ 443
>gi|350407679|ref|XP_003488158.1| PREDICTED: Fanconi anemia group J protein-like [Bombus impatiens]
Length = 959
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
++ I L +G+ GLCPYF AR HA I+ Y+Y++DP I + ++ V++
Sbjct: 401 IWDIEDLVAIGKNEGLCPYFAARSLAEHADIIFCPYNYIVDPDIRESMQLDVT-GHVIIL 459
Query: 114 DEAHNIDNVCVDSLSV 129
DEAHNI+++C + SV
Sbjct: 460 DEAHNIEDICREVASV 475
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
++ I L +G+ GLCPYF AR HA I+ Y+Y++DP I + ++ V++
Sbjct: 401 IWDIEDLVAIGKNEGLCPYFAARSLAEHADIIFCPYNYIVDPDIRESMQLDVT-GHVIIL 459
Query: 769 DEAHNIDNVCVDSLSV 784
DEAHNI+++C + SV
Sbjct: 460 DEAHNIEDICREVASV 475
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 597 GQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSV 656
G +L+D+ VP G++CFF+SY + + + W I + K +FIE + D + +
Sbjct: 736 GAVLLDVCESVPHGILCFFSSYNVMHTQMQRWISNSIWTKITSVKQIFIEPRYGGDLKDI 795
Query: 657 -----------SKERDGKIV 665
S +R GKI
Sbjct: 796 MYEYRQVIEQTSGKRRGKIT 815
>gi|429962084|gb|ELA41628.1| hypothetical protein VICG_01376 [Vittaforma corneae ATCC 50505]
Length = 657
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 14/176 (7%)
Query: 14 CHSLTSSSVRDRHKAGENI---PVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLC 70
C + T S V D++ A + C ++ D + + + ++ I +LK G++ C
Sbjct: 112 CINSTLSKVEDKNTACAELIKKKACVYFNGKDRLIKR--IGEKIFDIEELKREGKKCAGC 169
Query: 71 PYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVR 130
PYF AR+ A I+ Y+YL+D + +L +++++ DEAHNI++ C + SV
Sbjct: 170 PYFTARELQEDADIIFAPYNYLIDTSVRESSEIKLD-NAILIIDEAHNIEDCCRSAGSVE 228
Query: 131 INRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVE---GLRDAQSARETDV 183
I + IE I L G +K + A ++R E+ L++ L+D E DV
Sbjct: 229 ITSKLIEIV---INELIGAIK--RSALLGEVRGEFLSLMDIFRKLKDHSQTNEFDV 279
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 14/176 (7%)
Query: 669 CHSLTSSSVRDRHKAGENI---PVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLC 725
C + T S V D++ A + C ++ D + + + ++ I +LK G++ C
Sbjct: 112 CINSTLSKVEDKNTACAELIKKKACVYFNGKDRLIKR--IGEKIFDIEELKREGKKCAGC 169
Query: 726 PYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVR 785
PYF AR+ A I+ Y+YL+D + +L +++++ DEAHNI++ C + SV
Sbjct: 170 PYFTARELQEDADIIFAPYNYLIDTSVRESSEIKLD-NAILIIDEAHNIEDCCRSAGSVE 228
Query: 786 INRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVE---GLRDAQSARETDV 838
I + IE I L G +K + A ++R E+ L++ L+D E DV
Sbjct: 229 ITSKLIEIV---INELIGAIK--RSALLGEVRGEFLSLMDIFRKLKDHSQTNEFDV 279
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 24/159 (15%)
Query: 417 MVRENYAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLL 476
MVR + + +PV PYE YP Q + +L + + L+E P+GTGK+ S+L
Sbjct: 1 MVRTKF------NGIPVEIPYE-PYPPQLVTISKLIECFQTNTNALIESPTGTGKSLSIL 53
Query: 477 SLIVAYMNAHPLDVT------KLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLV 530
++A+ K+ CSRT +I++++++L + + I V
Sbjct: 54 CSVLAFYEQEKRRFNEQNKPFKIFICSRTHKQIDQLIDQLRKTI-----YRPRIT----V 104
Query: 531 LSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDG 569
L S+ CI+S +D + +L+ ACV +G
Sbjct: 105 LGSKNQYCINSTLSKVEDKNTA--CAELIKKKACVYFNG 141
>gi|307177078|gb|EFN66346.1| Fanconi anemia group J protein [Camponotus floridanus]
Length = 772
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 55 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 114
+ I L G+++G+CPYF AR + A+I+ Y+Y++DP I + L + +V+ D
Sbjct: 210 WDIEDLFSFGKDIGICPYFGARSLMDQAEIIFCPYNYIVDPHIRESMQINL-KGDIVILD 268
Query: 115 EAHNIDNVCVDSLSV 129
EAHNI++ C ++ SV
Sbjct: 269 EAHNIEDTCREAASV 283
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 710 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 769
+ I L G+++G+CPYF AR + A+I+ Y+Y++DP I + L + +V+ D
Sbjct: 210 WDIEDLFSFGKDIGICPYFGARSLMDQAEIIFCPYNYIVDPHIRESMQINL-KGDIVILD 268
Query: 770 EAHNIDNVCVDSLSV 784
EAHNI++ C ++ SV
Sbjct: 269 EAHNIEDTCREAASV 283
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L + FE + + G L++ + VP GV+CFF+SY+ + + W + G L+K
Sbjct: 534 LMANFENVNSWNFQDELGSLVLQVCDAVPYGVLCFFSSYITMNKLHDRWRNTGTWSKLEK 593
Query: 640 RKLLFIETQD 649
K +F+E ++
Sbjct: 594 LKKIFVEPRN 603
>gi|307197478|gb|EFN78712.1| Regulator of telomere elongation helicase 1 [Harpegnathos saltator]
Length = 963
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
C ++ +A + V I L + G++ CPYFLA++ A IV Y+YLL
Sbjct: 174 TCFYFNNVEARKDDPTFRQEVLDIEDLVKAGQKHKCCPYFLAKELKQSADIVFMPYNYLL 233
Query: 94 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 132
DPK +L +++VV+ DEAHN++ VC ++ S++I+
Sbjct: 234 DPKTRKSQGIDL-QNTVVLLDEAHNVEKVCEEAASLQIS 271
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
C ++ +A + V I L + G++ CPYFLA++ A IV Y+YLL
Sbjct: 174 TCFYFNNVEARKDDPTFRQEVLDIEDLVKAGQKHKCCPYFLAKELKQSADIVFMPYNYLL 233
Query: 749 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 787
DPK +L +++VV+ DEAHN++ VC ++ S++I+
Sbjct: 234 DPKTRKSQGIDL-QNTVVLLDEAHNVEKVCEEAASLQIS 271
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S + TR+D I + G+ L + +C+VP G++ FF SY + W + G+ + +
Sbjct: 522 LNSSYNTRNDPKYIASLGRTLYNFSCIVPHGLLIFFPSYPIMRKCRDEWQNMGLWTQISE 581
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRC 669
RK +++E +V E KI D C
Sbjct: 582 RKPIYVEPNSKDGFVNVMNEYYQKIKDPLC 611
Score = 41.6 bits (96), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 490 VTKLLYCSRTVPEIEKVVEELA-----RLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFE 544
V ++ S T+ ++ + EL +L + +I E++ G++ N ++S +
Sbjct: 469 VRSVVLTSGTLSPLKPFISELGIPIAVQLENPHIVTKEQV-CVGVLSQGPDNHPLNSSYN 527
Query: 545 TRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 577
TR+D I + G+ L + +C+VP G++ FF SY
Sbjct: 528 TRNDPKYIASLGRTLYNFSCIVPHGLLIFFPSY 560
>gi|403335726|gb|EJY67043.1| Regulator of telomere elongation helicase 1 [Oxytricha trifallax]
Length = 1454
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 22 VRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIH 81
VR++ K N C F++ G+ + L ++G + +CPY+L + I +
Sbjct: 225 VREQRKDSPN--CCSFFKNTGDSVTPNGFEWGIQDVEDLHKLGTKNIVCPYYLQKSRIKY 282
Query: 82 AKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVG 141
A +++ Y+YL+DPKI + +S+++ DEAHN++ V D S I+ + +G
Sbjct: 283 ADLILMPYNYLIDPKIRENFKVDYE-NSIIIMDEAHNVERVAEDVASFEIHINQLHTVLG 341
Query: 142 NIQTLEGTLK 151
+ L+ K
Sbjct: 342 ELHDLDKDFK 351
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 677 VRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIH 736
VR++ K N C F++ G+ + L ++G + +CPY+L + I +
Sbjct: 225 VREQRKDSPN--CCSFFKNTGDSVTPNGFEWGIQDVEDLHKLGTKNIVCPYYLQKSRIKY 282
Query: 737 AKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVG 796
A +++ Y+YL+DPKI + +S+++ DEAHN++ V D S I+ + +G
Sbjct: 283 ADLILMPYNYLIDPKIRENFKVDYE-NSIIIMDEAHNVERVAEDVASFEIHINQLHTVLG 341
Query: 797 NIQTLEGTLK 806
+ L+ K
Sbjct: 342 ELHDLDKDFK 351
Score = 46.2 bits (108), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 16/112 (14%)
Query: 447 YMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA-------HPLDVTKLLYCSRT 499
Y+ + +A + LLE P+GTGKT LL+ +A++ D+ K++YCSRT
Sbjct: 116 YLKHIDQACKRGLNALLESPTGTGKTLCLLTAGLAWLKKIRESNEVDEKDLPKIIYCSRT 175
Query: 500 VPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISV 551
+I +V+ EL + + ++ + G SR LC++ T +S+
Sbjct: 176 HSQISQVMNELK-----HTAYKPKVCLIG----SRDQLCVNPMVNTHKGMSL 218
>gi|397651437|ref|YP_006492018.1| DNA repair helicase rad3 [Pyrococcus furiosus COM1]
gi|393189028|gb|AFN03726.1| DNA repair helicase rad3 [Pyrococcus furiosus COM1]
Length = 647
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 68/112 (60%), Gaps = 10/112 (8%)
Query: 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKL 493
+FPYE + P Q ++ +K+A+ + ++E P+G GKT S+L+ ++ Y A L K+
Sbjct: 6 YFPYERLRPNQREFIEIVKEAVKRGENLIVEAPTGFGKTISVLAGVLPY--AISLGY-KV 62
Query: 494 LYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFET 545
+Y +RT ++++V+EEL ++ E ++G+ SR++LC+HS +T
Sbjct: 63 VYLARTHKQMDRVIEELKKI-------RERNEVSGIEFRSRRDLCLHSYIQT 107
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 67 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA---RSSVVVFDEAHNIDNVC 123
L LCPY + ++ A ++V SY Y++ P I + L +V+FDEAHN+ +
Sbjct: 165 LELCPYEITKKIGEKANVIVASYLYMISPPIRQAFLENLGVDYSDLIVIFDEAHNLPDQA 224
Query: 124 VDSLSVRINRRTIEKAV 140
+ +LS R++ R+IE+A+
Sbjct: 225 ISALSDRLSIRSIERAI 241
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 722 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA---RSSVVVFDEAHNIDNVC 778
L LCPY + ++ A ++V SY Y++ P I + L +V+FDEAHN+ +
Sbjct: 165 LELCPYEITKKIGEKANVIVASYLYMISPPIRQAFLENLGVDYSDLIVIFDEAHNLPDQA 224
Query: 779 VDSLSVRINRRTIEKAV 795
+ +LS R++ R+IE+A+
Sbjct: 225 ISALSDRLSIRSIERAI 241
>gi|315230899|ref|YP_004071335.1| DNA repair Rad3-like helicase [Thermococcus barophilus MP]
gi|315183927|gb|ADT84112.1| DNA repair Rad3-like helicase [Thermococcus barophilus MP]
Length = 642
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 14/136 (10%)
Query: 67 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA---RSSVVVFDEAHNIDNVC 123
L LCPY + R+ A ++V SY Y+L+P I N + L +V+FDEAHN+ N
Sbjct: 163 LELCPYEVTRKVGEKANVIVASYLYMLNPAIRNAFIESLGVDYEDLIVIFDEAHNLPNQA 222
Query: 124 VDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDV 183
+D LS +I +I +AV KE +E + ++ + ++GL + + R D
Sbjct: 223 IDVLSDKITLNSITRAV----------KEAEEYNEHEIANFLSIFLKGLENLYNERLKDR 272
Query: 184 VLAN-PVLPDEILQEV 198
+ P+LP+ I V
Sbjct: 273 EVEEIPILPESIFSHV 288
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 14/133 (10%)
Query: 722 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA---RSSVVVFDEAHNIDNVC 778
L LCPY + R+ A ++V SY Y+L+P I N + L +V+FDEAHN+ N
Sbjct: 163 LELCPYEVTRKVGEKANVIVASYLYMLNPAIRNAFIESLGVDYEDLIVIFDEAHNLPNQA 222
Query: 779 VDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDV 838
+D LS +I +I +AV KE +E + ++ + ++GL + + R D
Sbjct: 223 IDVLSDKITLNSITRAV----------KEAEEYNEHEIANFLSIFLKGLENLYNERLKDR 272
Query: 839 VLAN-PVLPDEIL 850
+ P+LP+ I
Sbjct: 273 EVEEIPILPESIF 285
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 39/172 (22%)
Query: 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKL 493
+FPY+ + P Q ++ + +A+ + ++E P+G GKT S+L+ ++ Y + K+
Sbjct: 4 YFPYKSLRPNQEEFISLVDEAVRKGENLIIEAPTGFGKTISVLAGVLPYALSMGF---KV 60
Query: 494 LYCSRTVPEIEKVVEELARLFDYYIKHNEEIN-MTGLVLSSRKNLCIHSEFETRDDISVI 552
+Y +RT ++++V+EEL K +IN ++G+ SRK LC+H S I
Sbjct: 61 VYLARTHKQMDRVIEEL--------KEINKINPVSGVEFRSRKELCLH---------SYI 103
Query: 553 RNYGQLLVDIACVVPDG----VVCFFTSYL----YLESVFETRDDISVIRNY 596
+N+ VPD +VC L Y E+V + +D+ S I Y
Sbjct: 104 QNF----------VPDAYNAMIVCKNLKKLHKCDYFENVKKKKDEFSEIVEY 145
>gi|383862044|ref|XP_003706494.1| PREDICTED: regulator of telomere elongation helicase 1 homolog
[Megachile rotundata]
Length = 974
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 14/158 (8%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSKE + CHS S C +Y + + V I L
Sbjct: 155 VSKETNSSNKIHMCHSKLKSRT------------CFYYNNVETRKEDPFFKQEVLDIEDL 202
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+ G++ CPYFL+R+ A I Y+YLLDPK +L ++ VV+ DEAHNI+
Sbjct: 203 VKAGQKYRCCPYFLSRELKQTADITFMPYNYLLDPKSRRSQGIDL-QNCVVLLDEAHNIE 261
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQ-TLEGTLKEMKEAD 157
+C ++ S++I I + + +E KEM E +
Sbjct: 262 KICEEAASLQICSTDIAMCIEELSVVMEDMAKEMTEQN 299
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 14/158 (8%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSKE + CHS S C +Y + + V I L
Sbjct: 155 VSKETNSSNKIHMCHSKLKSRT------------CFYYNNVETRKEDPFFKQEVLDIEDL 202
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
+ G++ CPYFL+R+ A I Y+YLLDPK +L ++ VV+ DEAHNI+
Sbjct: 203 VKAGQKYRCCPYFLSRELKQTADITFMPYNYLLDPKSRRSQGIDL-QNCVVLLDEAHNIE 261
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQ-TLEGTLKEMKEAD 812
+C ++ S++I I + + +E KEM E +
Sbjct: 262 KICEEAASLQICSTDIAMCIEELSVVMEDMAKEMTEQN 299
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F TR+D I + G+ + + +C++P+G++ FF
Sbjct: 508 QICVGVLSQGPDGYS--------LNSSFNTRNDPKYIMSLGRTIFNFSCLIPEGLLVFFP 559
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKL 642
SY ++ W + G+ + +RK+
Sbjct: 560 SYPVMKKCREEWQNVGLWTKIAERKV 585
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 36/65 (55%)
Query: 528 GLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETR 587
G++ ++S F TR+D I + G+ + + +C++P+G++ FF SY ++ E
Sbjct: 512 GVLSQGPDGYSLNSSFNTRNDPKYIMSLGRTIFNFSCLIPEGLLVFFPSYPVMKKCREEW 571
Query: 588 DDISV 592
++ +
Sbjct: 572 QNVGL 576
>gi|14590576|ref|NP_142644.1| hypothetical protein PH0697 [Pyrococcus horikoshii OT3]
gi|3257105|dbj|BAA29788.1| 641aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 641
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 67/112 (59%), Gaps = 10/112 (8%)
Query: 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKL 493
+FPYE P Q ++ +K+A+ + ++E P+G GKT S+L+ ++ Y + K+
Sbjct: 6 YFPYEKFRPNQREFIEIVKEAVKRGENLIVEAPTGFGKTISVLAGVLPYAISLGY---KV 62
Query: 494 LYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFET 545
+Y +RT ++++V+EEL ++ E+ ++G+ SRK+LC+H+ +T
Sbjct: 63 VYLARTHKQMDRVIEELRKI-------GEKSEVSGIEFRSRKDLCLHAYIQT 107
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 67 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA---RSSVVVFDEAHNIDNVC 123
L LCPY + ++ A +VV SY Y++ P I + L +V+FDEAHN+ +
Sbjct: 165 LELCPYEITKKVGEKANVVVASYLYMISPPIRQAFLENLGVDYSDLIVIFDEAHNLPDQA 224
Query: 124 VDSLSVRINRRTIEKAV 140
+ +LS R++ R+IE+A+
Sbjct: 225 ISALSDRLSVRSIERAI 241
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 722 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA---RSSVVVFDEAHNIDNVC 778
L LCPY + ++ A +VV SY Y++ P I + L +V+FDEAHN+ +
Sbjct: 165 LELCPYEITKKVGEKANVVVASYLYMISPPIRQAFLENLGVDYSDLIVIFDEAHNLPDQA 224
Query: 779 VDSLSVRINRRTIEKAV 795
+ +LS R++ R+IE+A+
Sbjct: 225 ISALSDRLSVRSIERAI 241
>gi|134107760|ref|XP_777491.1| hypothetical protein CNBB0650 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260183|gb|EAL22844.1| hypothetical protein CNBB0650 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 883
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
E F R+D +++ + G +L VVPDGVV F SY +L+ V A W G++ L +
Sbjct: 650 FEFKFGNRNDEALLTDLGAVLQATIGVVPDGVVVFLPSYAFLDKVRAFWTKSGLLQRLGE 709
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAV 699
RK LF E Q + D ++ RD + C++ ++S + R V D +
Sbjct: 710 RKQLFYEPQTSGDVETIL--RDYALAISSCYATSTSGQKSRKTGALMFAVVGGINFSDNL 767
Query: 700 GR 701
GR
Sbjct: 768 GR 769
Score = 47.0 bits (110), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V I + MG++ +CPY+ R+A+ ++IV Y+ LL + +L ++ VVV
Sbjct: 328 VKDIEDIVTMGKKSCVCPYYATRKAVKQSQIVTLPYNLLLQKNSREALGIKL-KNQVVVI 386
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 144
DEAHN+ + + + + AV +Q
Sbjct: 387 DEAHNLIDTLLSIHCTTLTSTNLANAVSQLQ 417
Score = 47.0 bits (110), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V I + MG++ +CPY+ R+A+ ++IV Y+ LL + +L ++ VVV
Sbjct: 328 VKDIEDIVTMGKKSCVCPYYATRKAVKQSQIVTLPYNLLLQKNSREALGIKL-KNQVVVI 386
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 799
DEAHN+ + + + + AV +Q
Sbjct: 387 DEAHNLIDTLLSIHCTTLTSTNLANAVSQLQ 417
>gi|310791719|gb|EFQ27246.1| DNA repair helicase [Glomerella graminicola M1.001]
Length = 897
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 25/117 (21%)
Query: 559 LVDIAC--VVPDGVVCFFT-----------SYLYLESVFETRDDISVIRNYGQLLVDIAC 605
L ++C V+P +C +T E F+ R + S + N G ++++
Sbjct: 592 LTTLSCGHVIPPSNLCVWTLAGPEPGPNRDINSTFEFSFQRRGEASTMSNLGMAILNMCN 651
Query: 606 VVPDGVVCFFTSYLYLESVVASWYDQG------------IIDNLQKRKLLFIETQDA 650
VVPDGVV FF SY YLE VV +W G I D LQ+RK +F ET+
Sbjct: 652 VVPDGVVVFFPSYGYLEEVVTAWKGAGPRNSQGQNGASSIWDRLQQRKAVFSETRGG 708
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 17/175 (9%)
Query: 10 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYS----ITKLKEMGR 65
++ RC L +D+ C + K D V + ++ I L +G+
Sbjct: 279 INDRCSELQKPKSKDK---------CPYTLKEDNVAQTHQFRDTAHATLPDIEDLYHLGK 329
Query: 66 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVD 125
+L +CPY+ +R A+ A+I+ Y LL + + +L +VV+ DEAHNI + +
Sbjct: 330 KLSICPYYASRAAVAGAEIITLPYPLLLQKNARDALGIKL-EGNVVIVDEAHNIMDAVAN 388
Query: 126 SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR---DAQS 177
+ I + +A + + + ++ + + R++EGL D QS
Sbjct: 389 VYASEIKLSELRQARQMLGVYVRRFGKKLKGENRVMVGQVGRVIEGLSEWMDGQS 443
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 17/175 (9%)
Query: 665 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYS----ITKLKEMGR 720
++ RC L +D+ C + K D V + ++ I L +G+
Sbjct: 279 INDRCSELQKPKSKDK---------CPYTLKEDNVAQTHQFRDTAHATLPDIEDLYHLGK 329
Query: 721 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVD 780
+L +CPY+ +R A+ A+I+ Y LL + + +L +VV+ DEAHNI + +
Sbjct: 330 KLSICPYYASRAAVAGAEIITLPYPLLLQKNARDALGIKL-EGNVVIVDEAHNIMDAVAN 388
Query: 781 SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR---DAQS 832
+ I + +A + + + ++ + + R++EGL D QS
Sbjct: 389 VYASEIKLSELRQARQMLGVYVRRFGKKLKGENRVMVGQVGRVIEGLSEWMDGQS 443
>gi|340378232|ref|XP_003387632.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Amphimedon queenslandica]
Length = 886
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 15/154 (9%)
Query: 653 SRSVSKERDGKIVDGRCHSLTS----SSVRD-------RHKAGENIPVCDFYEKFDAVGR 701
++SV+K + +++ RC L SS RD RH+ N CD+Y K + +
Sbjct: 241 NKSVTKLQSISLINERCIELQKNKKKSSTRDNDTVKTKRHRT-VNSDGCDYY-KLNNIET 298
Query: 702 EAPLA-PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL 760
LA + I +L +GR++ CPY+ R A+ HA+++V Y+ LL + V +L
Sbjct: 299 MRDLALDEIQDIEQLVTLGRDISGCPYYATRYAVPHAQLIVLPYNILLHSNTRDAVGIKL 358
Query: 761 ARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKA 794
+ ++V+ DEAHN+ + SV I I+K
Sbjct: 359 -KGNIVIIDEAHNLIDTISSIHSVHITMHQIQKT 391
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 15/151 (9%)
Query: 1 VSKERDGKIVDGRCHSLTS----SSVRD-------RHKAGENIPVCDFYEKFDAVGREAP 49
V+K + +++ RC L SS RD RH+ N CD+Y K + +
Sbjct: 244 VTKLQSISLINERCIELQKNKKKSSTRDNDTVKTKRHRT-VNSDGCDYY-KLNNIETMRD 301
Query: 50 LA-PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARS 108
LA + I +L +GR++ CPY+ R A+ HA+++V Y+ LL + V +L +
Sbjct: 302 LALDEIQDIEQLVTLGRDISGCPYYATRYAVPHAQLIVLPYNILLHSNTRDAVGIKL-KG 360
Query: 109 SVVVFDEAHNIDNVCVDSLSVRINRRTIEKA 139
++V+ DEAHN+ + SV I I+K
Sbjct: 361 NIVIIDEAHNLIDTISSIHSVHITMHQIQKT 391
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
+E R D +I G+ + +I +VP GVVCFF SY Y + V W G++D + +K +
Sbjct: 641 YEQRQDKQMIIELGRTISNIVTIVPGGVVCFFPSYEYEKLVFNIWEKNGLLDRIANKKQI 700
Query: 644 FIE 646
F E
Sbjct: 701 FRE 703
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVF 584
+E R D +I G+ + +I +VP GVVCFF SY Y + VF
Sbjct: 641 YEQRQDKQMIIELGRTISNIVTIVPGGVVCFFPSYEYEKLVF 682
>gi|409095652|ref|ZP_11215676.1| ERCC2/XPD/Rad3-related DNA repair helicase [Thermococcus zilligii
AN1]
Length = 636
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 64/108 (59%), Gaps = 10/108 (9%)
Query: 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKL 493
+FPYE + P Q ++ + +A+ + ++E P+G GKT S+L+ ++ Y K+
Sbjct: 3 YFPYETLRPHQREFIELVNEAVRRGSNLIIEAPTGFGKTISVLAGVLPYAKEAGY---KV 59
Query: 494 LYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHS 541
LY +RT ++++V+EEL + N++ ++G+ L SRK LC+H+
Sbjct: 60 LYLARTHRQMDRVIEELKEI-------NKKTPVSGVELRSRKELCLHN 100
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 67 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNVC 123
L LCPY L R+ A ++V SY Y++ P I + L + +V+FDEAHN+ +
Sbjct: 162 LELCPYDLTRKVAEKADVIVASYLYMISPGIREAFLEGLGLTYSDLIVIFDEAHNLPDQA 221
Query: 124 VDSLSVRINRRTIEKAV 140
+ +LS I+ T+ +A+
Sbjct: 222 ISALSDSISIHTVNRAI 238
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 722 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNVC 778
L LCPY L R+ A ++V SY Y++ P I + L + +V+FDEAHN+ +
Sbjct: 162 LELCPYDLTRKVAEKADVIVASYLYMISPGIREAFLEGLGLTYSDLIVIFDEAHNLPDQA 221
Query: 779 VDSLSVRINRRTIEKAV 795
+ +LS I+ T+ +A+
Sbjct: 222 ISALSDSISIHTVNRAI 238
>gi|429965550|gb|ELA47547.1| hypothetical protein VCUG_00978 [Vavraia culicis 'floridensis']
Length = 855
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V+ I +L++MG + CPY+ +R A I Y+Y++DP + + + EL ++SVV+
Sbjct: 140 VHDIEELRQMGEKCTGCPYYASRMLSESATITFMPYNYVVDPMVRHTMGIEL-KNSVVIV 198
Query: 114 DEAHNIDNVCVDSLSVRINRRTIE 137
DEAHNI++ C + S+ + TI+
Sbjct: 199 DEAHNIEDACRSAGSIELTNNTID 222
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V+ I +L++MG + CPY+ +R A I Y+Y++DP + + + EL ++SVV+
Sbjct: 140 VHDIEELRQMGEKCTGCPYYASRMLSESATITFMPYNYVVDPMVRHTMGIEL-KNSVVIV 198
Query: 769 DEAHNIDNVCVDSLSVRINRRTIE 792
DEAHNI++ C + S+ + TI+
Sbjct: 199 DEAHNIEDACRSAGSIELTNNTID 222
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 65/115 (56%), Gaps = 12/115 (10%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
+ I+ + + FP++ YP Q ++ L K ++E P+GTGK+ ++L ++A+ +A
Sbjct: 1 MKINSITIAFPFK-PYPAQILTCSKIIDCLKNKKTGIIESPTGTGKSIAILCAVLAW-HA 58
Query: 486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIH 540
H D T++ CSRT +++++V +L R Y K VL+SR+ LC++
Sbjct: 59 HNRD-TRIFICSRTHKQLDQLVAQL-RSTVYTPKV--------CVLASRRVLCLN 103
>gi|18977305|ref|NP_578662.1| DNA repair helicase rad3 [Pyrococcus furiosus DSM 3638]
gi|18892976|gb|AAL81057.1| DNA repair helicase rad3, putative [Pyrococcus furiosus DSM 3638]
Length = 631
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 67/112 (59%), Gaps = 10/112 (8%)
Query: 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKL 493
+FPYE + P Q ++ +K+A+ + ++E P+G GKT S+L+ ++ Y + K+
Sbjct: 6 YFPYERLRPNQREFIEIVKEAVKRGENLIVEAPTGFGKTISVLAGVLPYAISLGY---KV 62
Query: 494 LYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFET 545
+Y +RT ++++V+EEL ++ E ++G+ SR++LC+HS +T
Sbjct: 63 VYLARTHKQMDRVIEELKKI-------RERNEVSGIEFRSRRDLCLHSYIQT 107
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 67 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA---RSSVVVFDEAHNIDNVC 123
L LCPY + ++ A ++V SY Y++ P I + L +V+FDEAHN+ +
Sbjct: 165 LELCPYEITKKIGEKANVIVASYLYMISPPIRQAFLENLGVDYSDLIVIFDEAHNLPDQA 224
Query: 124 VDSLSVRINRRTIEKAV 140
+ +LS R++ R+IE+A+
Sbjct: 225 ISALSDRLSIRSIERAI 241
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 722 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA---RSSVVVFDEAHNIDNVC 778
L LCPY + ++ A ++V SY Y++ P I + L +V+FDEAHN+ +
Sbjct: 165 LELCPYEITKKIGEKANVIVASYLYMISPPIRQAFLENLGVDYSDLIVIFDEAHNLPDQA 224
Query: 779 VDSLSVRINRRTIEKAV 795
+ +LS R++ R+IE+A+
Sbjct: 225 ISALSDRLSIRSIERAI 241
>gi|242207140|ref|XP_002469424.1| predicted protein [Postia placenta Mad-698-R]
gi|220731453|gb|EED85297.1| predicted protein [Postia placenta Mad-698-R]
Length = 785
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 48/76 (63%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
+E R + ++I GQ+L++ VVP G+V F SY +L +++++W G+++ L+ RK +
Sbjct: 551 YEQRGNQAIIAELGQILLNFVNVVPGGMVVFLPSYSFLHTMMSAWEGSGLMEKLKSRKRV 610
Query: 644 FIETQDALDSRSVSKE 659
F E QDA +V +E
Sbjct: 611 FSEPQDAGQIEAVLRE 626
>gi|399950025|gb|AFP65681.1| DNA repair helicase component of transcription factor b [Chroomonas
mesostigmatica CCMP1168]
Length = 759
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M + +L V+FPY+ ++PEQ YM LKK D K H + +P G G + +S ++Y
Sbjct: 1 MQFYVQNLCVYFPYKIVFPEQIQYMYILKKIFDKKKHGITGIPPGMGFCLTTISFFISY- 59
Query: 484 NAHPLDVTKLLYCSRTVPEIE 504
N KL+YC R EIE
Sbjct: 60 NFFSKKKKKLIYCLRRENEIE 80
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 84/413 (20%), Positives = 158/413 (38%), Gaps = 52/413 (12%)
Query: 10 VDGRCHSLTSSSVRDRHK--------------AGENIPVCDFYEKFDAVGREAPLAPGVY 55
V+ CHSL S + K N C F+ + R+ G++
Sbjct: 132 VEDFCHSLLSPYFFSKKKETFFPIEKKKETGIITNNESKCFFFTNYIH-KRKKIFFKGIW 190
Query: 56 SITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDE 115
+I KL+ G + C +FL++ + +V+ + + + + ++K+L S ++FD
Sbjct: 191 TIFKLRNFGIKKNFCSFFLSKDIFVRCDVVISHIYQIFFSETFSSLNKKLTNCSFLIFDN 250
Query: 116 AHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDA 175
+++++ SV I+ I I L+ + S K + +E
Sbjct: 251 IFDLESLNSLFFSVNIDPLVINDCQRGIFLLKKNF-YWSQKISIKKKNFNFFFIELF--- 306
Query: 176 QSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQ---- 231
++D + ++ + + N + F F + + K R R+Q++
Sbjct: 307 ----DSDSLFSDNIKKVVFWKNFFNKNKKRLNFFFNFSQ---QKNKKRRRIQRIFHNLET 359
Query: 232 -ESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVC 290
E F K+I +K I + + I E + L+ + + E+ T S V
Sbjct: 360 IEQIVFFFKEILTKT----IFQKWDPI----EFVNCFLK-KFFIYETSIT-----SINVL 405
Query: 291 IERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVS-SYTKGFAIIVEPFSDKA 349
+ FC LL + FS ++ L + S +Y + F I + K
Sbjct: 406 VNFLSNLFC------LLGFFNFRKMNGFSKILEFLKLIWINSETYNQNFIIFFSLENHKF 459
Query: 350 PTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIM 402
P + P L C ++ L K F+ F +V+I S LS L I++ +P I
Sbjct: 460 PLLLEPCLEIICTETCLLFKSFFENFSSVIIISNNLSNLPFLFFIIDCKPKIF 512
Score = 43.9 bits (102), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 59/137 (43%), Gaps = 15/137 (10%)
Query: 665 VDGRCHSLTSSSVRDRHK--------------AGENIPVCDFYEKFDAVGREAPLAPGVY 710
V+ CHSL S + K N C F+ + R+ G++
Sbjct: 132 VEDFCHSLLSPYFFSKKKETFFPIEKKKETGIITNNESKCFFFTNYIH-KRKKIFFKGIW 190
Query: 711 SITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDE 770
+I KL+ G + C +FL++ + +V+ + + + + ++K+L S ++FD
Sbjct: 191 TIFKLRNFGIKKNFCSFFLSKDIFVRCDVVISHIYQIFFSETFSSLNKKLTNCSFLIFDN 250
Query: 771 AHNIDNVCVDSLSVRIN 787
+++++ SV I+
Sbjct: 251 IFDLESLNSLFFSVNID 267
>gi|326931537|ref|XP_003211885.1| PREDICTED: Fanconi anemia group J protein homolog [Meleagris
gallopavo]
Length = 1257
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
+ I L +G++L CPYF AR+ ++ A IV Y+YLLDP+I + L + VV+
Sbjct: 345 AWDIEDLVSLGKKLRACPYFAARELMVGADIVFCPYNYLLDPQIRESMEINL-KGQVVIL 403
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 173
DEAHNI++ +++S + + A + + +++ D LR L LR
Sbjct: 404 DEAHNIEDSAREAVSYSVTESQLNAAREELDFMVNN--NIRQKDHEHLRAVCYSLTNWLR 461
Query: 174 DAQS 177
+ S
Sbjct: 462 ASSS 465
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
+ I L +G++L CPYF AR+ ++ A IV Y+YLLDP+I + L + VV+
Sbjct: 345 AWDIEDLVSLGKKLRACPYFAARELMVGADIVFCPYNYLLDPQIRESMEINL-KGQVVIL 403
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 828
DEAHNI++ +++S + + A + + +++ D LR L LR
Sbjct: 404 DEAHNIEDSAREAVSYSVTESQLNAAREELDFMVNN--NIRQKDHEHLRAVCYSLTNWLR 461
Query: 829 DAQS 832
+ S
Sbjct: 462 ASSS 465
Score = 47.0 bits (110), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
I + + FP + YP Q A M + K L+ HCLLE P+G+GK+ +LL +++ A
Sbjct: 10 IGGVKIMFPCK-AYPSQLAMMNAIVKGLNNGQHCLLESPTGSGKSLALLCSALSWQQA 66
>gi|322694417|gb|EFY86247.1| DEAD-2 domain-containing protein [Metarhizium acridum CQMa 102]
Length = 891
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 106/247 (42%), Gaps = 40/247 (16%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSG---TGKTTSLLSLIVAYMN 484
ID + +F +YI + AY +E A H E SG T +T +L +V+++
Sbjct: 463 IDQINMFELIQYIQESKLAYKIESYAA-----HVESENSSGKPATKSSTPVLHTLVSFLA 517
Query: 485 A--HPLDVTKLLYCSRTVP----EIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLC 538
A +P ++ Y + P ++ ++ F + + + G +S +
Sbjct: 518 ALTNPSTEGRIFYQKTSGPVQDVQLSYLLLSPTHAFSSIVSSARAVILAGGTMSPFDDYK 577
Query: 539 IHSEFETRDDISVIRNYGQLLVDIAC--VVP--DGVVCFFTSYLYLESVFE----TRDDI 590
H F D V ++C V+P + VC T S FE R D
Sbjct: 578 NHL-FPALADAKV--------TTLSCGHVIPRENLCVCTLTGTRPGGSSFEFSYQRRGDQ 628
Query: 591 SVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQG---------IIDNLQKRK 641
+++ G +++I +VPDGVV FF SY YLE VVA W + I D LQ RK
Sbjct: 629 EMVKELGLAILNICSLVPDGVVVFFPSYGYLEEVVAVWSRRALGDKNPQTTIWDRLQTRK 688
Query: 642 LLFIETQ 648
++F ET+
Sbjct: 689 MVFRETK 695
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 46 REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL 105
R++ LA V I L ++G+ L +CPY+ +R A+ A+I+ Y LL + +L
Sbjct: 311 RDSALAT-VPDIEDLHQLGKSLAVCPYYASRSALPGAEIITLPYPLLLQRSAREALGIKL 369
Query: 106 ARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVG 141
+VV+ DEAHN+ + + + I ++K G
Sbjct: 370 -EGNVVIIDEAHNVMDAVANVHAAEIKLSDLQKGRG 404
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 701 REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL 760
R++ LA V I L ++G+ L +CPY+ +R A+ A+I+ Y LL + +L
Sbjct: 311 RDSALAT-VPDIEDLHQLGKSLAVCPYYASRSALPGAEIITLPYPLLLQRSAREALGIKL 369
Query: 761 ARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVG 796
+VV+ DEAHN+ + + + I ++K G
Sbjct: 370 -EGNVVIIDEAHNVMDAVANVHAAEIKLSDLQKGRG 404
>gi|403361814|gb|EJY80616.1| hypothetical protein OXYTRI_21994 [Oxytricha trifallax]
Length = 957
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 56 SITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDE 115
+I ++ ++G E+ +CPYF + A I+ Y++L+DPKI + + ++S+++FDE
Sbjct: 162 NIEEMCKLGEEMVICPYFGNKDRAAGADILFMPYNFLIDPKIREIFEFKF-KNSIIIFDE 220
Query: 116 AHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 147
AHN+ D+ S ++ + +E V +Q LE
Sbjct: 221 AHNVPQQAEDASSFDLDTKQLEYVVNELQKLE 252
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 711 SITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDE 770
+I ++ ++G E+ +CPYF + A I+ Y++L+DPKI + + ++S+++FDE
Sbjct: 162 NIEEMCKLGEEMVICPYFGNKDRAAGADILFMPYNFLIDPKIREIFEFKF-KNSIIIFDE 220
Query: 771 AHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
AHN+ D+ S ++ + +E V +Q LE
Sbjct: 221 AHNVPQQAEDASSFDLDTKQLEYVVNELQKLE 252
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 23/133 (17%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN- 484
+++ V FP++ Y Q +M +L +L + LLE P+GTGKT SLL +A++
Sbjct: 38 FTTEEVEVMFPFK-PYQCQINFMAKLINSLKLGDNALLESPTGTGKTLSLLCASLAWLKN 96
Query: 485 ------------AHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLS 532
D +++Y SRT ++ +V EL N N L+L+
Sbjct: 97 EREKNGRFPPSLTDKKDYIQIIYTSRTHSQLSQVQRELK---------NTAYNPRSLLLA 147
Query: 533 SRKNLCIHSEFET 545
SR ++C+H+EF+
Sbjct: 148 SRDHMCVHAEFKN 160
>gi|354492614|ref|XP_003508442.1| PREDICTED: probable ATP-dependent RNA helicase DDX11-like
[Cricetulus griseus]
Length = 771
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 477 SLIVAYMNAHP--LDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN---EEINMTGLVL 531
S ++ YM + L L+Y +T+ +E+ V L ++ N + + TG L
Sbjct: 414 SQLLQYMERYGKRLKAKNLMYIKQTLYLLERFVAVLG----GNVRQNPRTQSLLHTGSEL 469
Query: 532 SSRKNLCIHSEFETRDDISVIRNYGQLL----------VDIAC---VVPDGV----VCFF 574
S + S+ + + V QLL V+ +C + PD + +C
Sbjct: 470 KSINDFLFQSQVDNINLFKVSDFRDQLLACSGVEAERVVEFSCGHVIPPDNILPLIICSG 529
Query: 575 TSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGII 634
S LE ++ RD ++ G++L ++ VVP GVVCFF SY YL + A W G++
Sbjct: 530 PSNQQLEFTYQRRDLPQMMEETGRVLCNLCNVVPGGVVCFFPSYEYLRQIHAHWDKTGLL 589
Query: 635 DNLQKRKLLFIETQDA 650
L +K LF E + A
Sbjct: 590 ARLSVKKKLFQEPKRA 605
Score = 47.4 bits (111), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 16/159 (10%)
Query: 8 KIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFY--EKFDAVGREAPLAPGVYS 56
++++ RC + S ++ AGE++P C F+ E+ + E L V
Sbjct: 274 QLMNDRCVDMQRSK-HEKTGAGEDMPKKRRRRIQTSCPFHNHEQMQLLRDEILLE--VKD 330
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
+ +L +G+E CPY+ +R AI A++VV Y LL L + VV+ DEA
Sbjct: 331 MEQLVALGKEARACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRL-QGQVVIIDEA 389
Query: 117 HNIDNVCVDSLSVRINRRTIEKAVGN-IQTLEGTLKEMK 154
HN+ + S +N + +A +Q +E K +K
Sbjct: 390 HNLIDTITSIYSTEVNGSQLCQAYSQLLQYMERYGKRLK 428
Score = 47.4 bits (111), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 16/159 (10%)
Query: 663 KIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFY--EKFDAVGREAPLAPGVYS 711
++++ RC + S ++ AGE++P C F+ E+ + E L V
Sbjct: 274 QLMNDRCVDMQRSK-HEKTGAGEDMPKKRRRRIQTSCPFHNHEQMQLLRDEILLE--VKD 330
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
+ +L +G+E CPY+ +R AI A++VV Y LL L + VV+ DEA
Sbjct: 331 MEQLVALGKEARACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRL-QGQVVIIDEA 389
Query: 772 HNIDNVCVDSLSVRINRRTIEKAVGN-IQTLEGTLKEMK 809
HN+ + S +N + +A +Q +E K +K
Sbjct: 390 HNLIDTITSIYSTEVNGSQLCQAYSQLLQYMERYGKRLK 428
>gi|426241833|ref|XP_004014789.1| PREDICTED: regulator of telomere elongation helicase 1 [Ovis aries]
Length = 1305
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Query: 47 EAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA 106
E LA + I L G + LCPY+L+R A I+ Y+YLLD K S +L
Sbjct: 221 EQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLDAKSRRAHSIDL- 279
Query: 107 RSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEMKEADSAKLREEY 165
+ +VV+FDEAHN++ +C ++ S + + + I Q LE ++ K A A+L E+
Sbjct: 280 KGTVVIFDEAHNVEKMCEEAASFDLTPHDVASGLDVIDQVLE---EQTKVAQQAELHPEF 336
Query: 166 A 166
+
Sbjct: 337 S 337
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Query: 702 EAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA 761
E LA + I L G + LCPY+L+R A I+ Y+YLLD K S +L
Sbjct: 221 EQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLDAKSRRAHSIDL- 279
Query: 762 RSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEMKEADSAKLREEY 820
+ +VV+FDEAHN++ +C ++ S + + + I Q LE ++ K A A+L E+
Sbjct: 280 KGTVVIFDEAHNVEKMCEEAASFDLTPHDVASGLDVIDQVLE---EQTKVAQQAELHPEF 336
Query: 821 A 821
+
Sbjct: 337 S 337
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 97/231 (41%), Gaps = 64/231 (27%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM-- 483
+ + + V FP++ Y Q YM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 ITLKGVTVDFPFQ-PYKCQEEYMSKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWREH 62
Query: 484 ----------------------------NAHP--------LDVTKLLYCSRTVPEIEKVV 507
NA P D+ K++Y SRT ++ +V+
Sbjct: 63 LRDAVSARRIAERASGELFPDRTLASWGNAIPEGDVPACYTDIPKIIYASRTHSQLTQVI 122
Query: 508 EELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVP 567
EL N VL SR+ LCIH E + ++ N+ Q+ + V
Sbjct: 123 SEL---------RNTSYRPRVCVLGSREQLCIHPEVKKQES-----NHMQVHLCRRKVA- 167
Query: 568 DGVVC-FFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTS 617
G C F+ + +Y ++ R +S+++ VD C+ G+ F+TS
Sbjct: 168 -GRSCHFYNNVVYCGAL---RPSVSMLQG-----VDCGCLRGSGLAAFYTS 209
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 17/130 (13%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F+ R + + G++L +I+ VVP G++ FF
Sbjct: 546 QIWVGVIPKGPDGA--------QLSSAFDRRFSDECLSSLGKVLSNISRVVPHGLLVFFP 597
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQ---------DALDSRSVSKERDGKIVDG 667
SY +E + W L+ RK LF+E + +A +R + E G I
Sbjct: 598 SYPVMEKSLEFWRAHDFTRKLEVRKPLFVEPRSKGGFSEVMEAFYARVAAPESSGAIFLA 657
Query: 668 RCHSLTSSSV 677
C S +
Sbjct: 658 VCRGKASEGL 667
>gi|319411548|emb|CBQ73592.1| related to CHL1-protein of the DEAH box family [Sporisorium
reilianum SRZ2]
Length = 932
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 18/171 (10%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGR-------EAPLAPG 53
+ + R + ++ RC L KA + C FD VGR +A +A
Sbjct: 301 IGRSRGSEAMNERCLELM--------KAKKGKTKCPSLPPFDQVGRAQVLEFRDAAMAE- 351
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V I L ++G++ CPYF AR + A++V Y+ LL N + L +V+
Sbjct: 352 VGDIEDLVQLGKQTKTCPYFAARSSAKQAELVTLPYNLLLQKDARNALGISL-EGCIVLI 410
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT-LEGTLKEMKEADSAKLRE 163
DEAHN+ + + + SV ++ R I +A I T LE +K ++ LR+
Sbjct: 411 DEAHNLIDTILSTHSVTVDSRQIAQASKQIDTYLEKFAPRLKGSNEQNLRK 461
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 18/171 (10%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGR-------EAPLAPG 708
+ + R + ++ RC L KA + C FD VGR +A +A
Sbjct: 301 IGRSRGSEAMNERCLELM--------KAKKGKTKCPSLPPFDQVGRAQVLEFRDAAMAE- 351
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V I L ++G++ CPYF AR + A++V Y+ LL N + L +V+
Sbjct: 352 VGDIEDLVQLGKQTKTCPYFAARSSAKQAELVTLPYNLLLQKDARNALGISL-EGCIVLI 410
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT-LEGTLKEMKEADSAKLRE 818
DEAHN+ + + + SV ++ R I +A I T LE +K ++ LR+
Sbjct: 411 DEAHNLIDTILSTHSVTVDSRQIAQASKQIDTYLEKFAPRLKGSNEQNLRK 461
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 558 LLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTS 617
L+V + P G L E F++RD++ ++ G+ L ++ ++P G+V F S
Sbjct: 671 LMVSVLSASPKG--------LPFEFKFDSRDNLELVDELGRTLANLCNIIPAGLVVFVPS 722
Query: 618 YLYLESVVASWYDQ---GIIDNLQKRKLLFIETQDALD 652
Y +L+ V+A W D G++ L +K +F E + ++
Sbjct: 723 YAFLDKVMARWKDAASGGVLQRLGSKKKIFTEPKTTME 760
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 526 MTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
M ++ +S K L +F++RD++ ++ G+ L ++ ++P G+V F SY +L+ V
Sbjct: 672 MVSVLSASPKGLPFEFKFDSRDNLELVDELGRTLANLCNIIPAGLVVFVPSYAFLDKVMA 731
Query: 586 TRDDIS 591
D +
Sbjct: 732 RWKDAA 737
>gi|340385001|ref|XP_003390999.1| PREDICTED: regulator of telomere elongation helicase 1-like,
partial [Amphimedon queenslandica]
Length = 466
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 20/197 (10%)
Query: 641 KLLFIETQDAL--DSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDA 698
K+ I ++D L +S +SKE + + V CH+ ++ C +Y D
Sbjct: 118 KVSIIGSRDQLCINSEVMSKESNAEKVHA-CHAKVAAKS------------CTYYNNVDL 164
Query: 699 VGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSK 758
P + + I +L MG + +CPY+LAR+ A ++ Y+Y+LD + V
Sbjct: 165 KRLSVPES-FIPDIEELVGMGTKNKMCPYYLAREMKTEADLIFMPYNYILDLRTRLVHGI 223
Query: 759 ELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLRE 818
+ ++VV+ DEAHNI+ VC DS S + I + +I L LK E L E
Sbjct: 224 NIT-NTVVILDEAHNIERVCEDSSSFELTSTDIAHCIKDIDYL---LKNKYEEAREYLSE 279
Query: 819 EYARLVEGLRDAQSARE 835
+ L+D + +E
Sbjct: 280 LDTQTQNTLKDLANLKE 296
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 5/146 (3%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C +Y D P + + I +L MG + +CPY+LAR+ A ++ Y+Y+LD
Sbjct: 156 CTYYNNVDLKRLSVPES-FIPDIEELVGMGTKNKMCPYYLAREMKTEADLIFMPYNYILD 214
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 154
+ V + ++VV+ DEAHNI+ VC DS S + I + +I L LK
Sbjct: 215 LRTRLVHGINIT-NTVVILDEAHNIERVCEDSSSFELTSTDIAHCIKDIDYL---LKNKY 270
Query: 155 EADSAKLREEYARLVEGLRDAQSARE 180
E L E + L+D + +E
Sbjct: 271 EEAREYLSELDTQTQNTLKDLANLKE 296
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 27/138 (19%)
Query: 427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAH 486
+I+++PV FP+ YP Q YM ++ KAL + +LE P+GTGKT SLL +++
Sbjct: 11 VIENVPVSFPFT-PYPCQIEYMEKVIKALQNNTNAILESPTGTGKTLSLLCATLSWRQQL 69
Query: 487 PLDVT-----------------KLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGL 529
P V K++Y SRT ++ + + EL + ++++ G
Sbjct: 70 PAPVISEWDLQSDSKGPLGGRPKIIYASRTHSQLSQAIHELKS-----TSYRPKVSIIG- 123
Query: 530 VLSSRKNLCIHSEFETRD 547
SR LCI+SE +++
Sbjct: 124 ---SRDQLCINSEVMSKE 138
>gi|70917360|ref|XP_732828.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56504059|emb|CAH78967.1| hypothetical protein PC000001.03.0 [Plasmodium chabaudi chabaudi]
Length = 92
Score = 62.8 bits (151), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 45/71 (63%)
Query: 853 KTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTR 912
K DYGIMIF+D R+AR+DK+ KLP WI + + + NL+ V +SK++L M+Q +
Sbjct: 2 KKDYGIMIFSDIRYARNDKKGKLPPWIIKCMDVSNINLTIGAGVSISKKFLLNMSQEYKE 61
Query: 913 EDMLGVALLSL 923
D ++ + L
Sbjct: 62 TDQTKISQVIL 72
>gi|339265705|ref|XP_003366015.1| fanconi anemia group J protein [Trichinella spiralis]
gi|316965098|gb|EFV49922.1| fanconi anemia group J protein [Trichinella spiralis]
Length = 824
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIH-AKIVVYSYHYLLDPKIANVVSKELARSSVVV 112
+ I +L E GR+L CPYF + + A ++ Y YL+DP + + + L + V++
Sbjct: 247 AWDIEELVEAGRKLNFCPYFASVDNMYQDANLIFCPYGYLIDPVVRSSSNINL-KGQVII 305
Query: 113 FDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEA 156
FDEAHN+++ C + S +I ++ + AV + ++E + E K++
Sbjct: 306 FDEAHNMEDECCEKASFQITKQELVDAVEYLSSIEELVPESKKS 349
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIH-AKIVVYSYHYLLDPKIANVVSKELARSSVVV 767
+ I +L E GR+L CPYF + + A ++ Y YL+DP + + + L + V++
Sbjct: 247 AWDIEELVEAGRKLNFCPYFASVDNMYQDANLIFCPYGYLIDPVVRSSSNINL-KGQVII 305
Query: 768 FDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEA 811
FDEAHN+++ C + S +I ++ + AV + ++E + E K++
Sbjct: 306 FDEAHNMEDECCEKASFQITKQELVDAVEYLSSIEELVPESKKS 349
Score = 40.4 bits (93), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 597 GQLLVDIACVVPDGVVCFFTSYLYLESVVASW 628
G+LL++I V PDGV+CF SY +++ ++ W
Sbjct: 588 GRLLIEICKVTPDGVLCFLPSYTFIDCLLTRW 619
>gi|426372116|ref|XP_004052976.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein 8
[Gorilla gorilla gorilla]
Length = 1016
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VVP GV
Sbjct: 754 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGV 813
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W ++ L RK +F E + A
Sbjct: 814 VCFFPSYEYLRQVHAHWEKGSLLGRLAARKKIFQEPKSA 852
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 420 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 477
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTL 146
Y LL L + VV+ DEAHN+ + SV ++ + +A +Q +
Sbjct: 478 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHSQLLQYM 536
Query: 147 EGTLKEMKEADSAKLRE 163
E K +K + L++
Sbjct: 537 EQYGKRLKAKNLMYLKQ 553
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 420 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 477
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTL 801
Y LL L + VV+ DEAHN+ + SV ++ + +A +Q +
Sbjct: 478 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHSQLLQYM 536
Query: 802 EGTLKEMKEADSAKLRE 818
E K +K + L++
Sbjct: 537 EQYGKRLKAKNLMYLKQ 553
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
++ S N + F+ R+ ++ G++L ++ VVP GVVCFF SY YL V
Sbjct: 772 VICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQV 826
>gi|358054721|dbj|GAA99647.1| hypothetical protein E5Q_06350 [Mixia osmundae IAM 14324]
Length = 830
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 45/68 (66%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKL 642
+E RD+++++++ G + +A V P G+VCF SY +L+ + A W G+I+ ++K KL
Sbjct: 606 TYENRDNLAMLQDLGSAIATLARVCPAGIVCFVPSYAFLDKLQAVWKSSGMIERIRKNKL 665
Query: 643 LFIETQDA 650
+F+E + A
Sbjct: 666 IFMEPKTA 673
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 60 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
L+++GR +CPY+ +R+AI A +V Y+ LL + L + +V+ DEAHN+
Sbjct: 300 LEDLGRATHVCPYYGSRRAIRQAHVVTLPYNMLLQHAARESLGISL-KGHIVIIDEAHNL 358
Query: 120 DNVCVDSLSVRINRRTIEKAVGNIQ 144
+ + +V I +I A+ +Q
Sbjct: 359 IDTVLSINTVSIASTSISNALSGVQ 383
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L+++GR +CPY+ +R+AI A +V Y+ LL + L + +V+ DEAHN+
Sbjct: 300 LEDLGRATHVCPYYGSRRAIRQAHVVTLPYNMLLQHAARESLGISL-KGHIVIIDEAHNL 358
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQ 799
+ + +V I +I A+ +Q
Sbjct: 359 IDTVLSINTVSIASTSISNALSGVQ 383
>gi|348564904|ref|XP_003468244.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Cavia porcellus]
Length = 908
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C + LE F+ R+ +++ G++L ++ VVP G+
Sbjct: 646 VVEFSCGHVIPPDNILPLVLCSGPTGQQLEFTFQQRELPAMMEETGRILCNLCNVVPGGL 705
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY Y V+A W G++ L RK LF E + A
Sbjct: 706 VCFFPSYEYQRQVLAHWDKSGLLARLTVRKKLFQEPKRA 744
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 10/134 (7%)
Query: 8 KIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFYEKFDAVGREAPLAPGVYSIT 58
++++ RC + S ++++A P C FY + + +
Sbjct: 279 QLINDRCMEMQRSPHENKNRAEAEKPKRRRQEGRTACPFYNREQTQLLRDEILVAARDME 338
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+L +GRE CPY+ +R A+ A++VV Y LL L + VV+ DEAHN
Sbjct: 339 QLVALGREARACPYYGSRLAVPVAQLVVLPYPMLLHAATRQAAGIRL-QGQVVIIDEAHN 397
Query: 119 IDNVCVDSLSVRIN 132
+ + D S ++
Sbjct: 398 LIDTITDIHSTEVS 411
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 10/134 (7%)
Query: 663 KIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFYEKFDAVGREAPLAPGVYSIT 713
++++ RC + S ++++A P C FY + + +
Sbjct: 279 QLINDRCMEMQRSPHENKNRAEAEKPKRRRQEGRTACPFYNREQTQLLRDEILVAARDME 338
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
+L +GRE CPY+ +R A+ A++VV Y LL L + VV+ DEAHN
Sbjct: 339 QLVALGREARACPYYGSRLAVPVAQLVVLPYPMLLHAATRQAAGIRL-QGQVVIIDEAHN 397
Query: 774 IDNVCVDSLSVRIN 787
+ + D S ++
Sbjct: 398 LIDTITDIHSTEVS 411
>gi|348554129|ref|XP_003462878.1| PREDICTED: regulator of telomere elongation helicase 1-like [Cavia
porcellus]
Length = 1250
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E L + I L + G + +CPY+L+R A ++ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELVTPILDIEDLVKKGSKHKVCPYYLSRNLKQQADLIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE +
Sbjct: 232 TKSRKAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDVASGLEAIDQVLEEQTRMA 290
Query: 154 KEAD 157
++++
Sbjct: 291 QQSE 294
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E L + I L + G + +CPY+L+R A ++ Y+YLLD
Sbjct: 172 CHFYNNVEEKSLEQELVTPILDIEDLVKKGSKHKVCPYYLSRNLKQQADLIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE +
Sbjct: 232 TKSRKAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDVASGLEAIDQVLEEQTRMA 290
Query: 809 KEAD 812
++++
Sbjct: 291 QQSE 294
Score = 47.0 bits (110), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
QL V + PDG L S F+ R + + G+ L +IA VVP G++ FF
Sbjct: 504 QLWVGVVPRGPDGA--------ELSSAFDKRFSEECLSSLGKTLGNIARVVPHGLLVFFP 555
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY +E + W + + L+ K LF+E
Sbjct: 556 SYPVMEKSLEFWRARDLARKLEALKPLFVE 585
>gi|242057873|ref|XP_002458082.1| hypothetical protein SORBIDRAFT_03g026670 [Sorghum bicolor]
gi|241930057|gb|EES03202.1| hypothetical protein SORBIDRAFT_03g026670 [Sorghum bicolor]
Length = 759
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 12/128 (9%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSK R G+ + CH L + + N V +F + +G E + I L
Sbjct: 149 VSKLR-GRAQNNACHFLCK-----KRRCPHNNHVSEFMKNKPELGNEP------FDIEDL 196
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+GR G CPY+++R+ I+ Y+YL+DP ++ ++V++FDEAHN++
Sbjct: 197 INIGRRKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLNGIPWDNAVLIFDEAHNLE 256
Query: 121 NVCVDSLS 128
++C D+ S
Sbjct: 257 SICADAAS 264
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 12/128 (9%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSK R G+ + CH L + + N V +F + +G E + I L
Sbjct: 149 VSKLR-GRAQNNACHFLCK-----KRRCPHNNHVSEFMKNKPELGNEP------FDIEDL 196
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
+GR G CPY+++R+ I+ Y+YL+DP ++ ++V++FDEAHN++
Sbjct: 197 INIGRRKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLNGIPWDNAVLIFDEAHNLE 256
Query: 776 NVCVDSLS 783
++C D+ S
Sbjct: 257 SICADAAS 264
Score = 41.2 bits (95), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 17/152 (11%)
Query: 542 EFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLV 601
EF R + + + Q+ V + V P G L S + R+ I + G +V
Sbjct: 476 EFPVRLENPHVISSDQIWVGVVPVGPSGHA--------LNSSYRMRNTIQYKQELGTAIV 527
Query: 602 DIACVVPDGVVCFFTSYLYLESVVASWYDQG---------IIDNLQKRKLLFIETQDALD 652
+ A +VPDG++ FF SY ++ V W ++ I + K K IE + + +
Sbjct: 528 NFARIVPDGLLVFFPSYSMMDMCVEFWKNRNHSNSASENTIWQRICKHKQPVIEPRQSSN 587
Query: 653 SRSVSKERDGKIVDGRCHSLTSSSVRDRHKAG 684
+S ++ K+ D ++ + R + G
Sbjct: 588 FQSAIEDYRAKLHDSSSGAIFFAVCRGKVSEG 619
>gi|389601910|ref|XP_001566207.2| helicase-like protein [Leishmania braziliensis MHOM/BR/75/M2904]
gi|322505237|emb|CAM39707.2| helicase-like protein [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 1112
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 8/107 (7%)
Query: 31 NIPVCDFYEKFDAVGREAPLAP------GVYSITKLKEMGRELGLCPYFLARQAIIHAKI 84
++ +C+ +++D + A P ++ I L G +CPY+ AR + A +
Sbjct: 273 SMGLCEMVDRYDELSCSAIAGPVGHQRGQIWDIEDLLLEGTSRRMCPYYAARDLVFFADV 332
Query: 85 VVYSYHYLLDPKIANVVSKE--LARSSVVVFDEAHNIDNVCVDSLSV 129
+Y YLLDP I + E L +++VVFDEAHN+ VC D+LS+
Sbjct: 333 NFCTYPYLLDPLIRHETKMEAALKNNAIVVFDEAHNVAAVCQDALSL 379
Score = 62.8 bits (151), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 8/107 (7%)
Query: 686 NIPVCDFYEKFDAVGREAPLAP------GVYSITKLKEMGRELGLCPYFLARQAIIHAKI 739
++ +C+ +++D + A P ++ I L G +CPY+ AR + A +
Sbjct: 273 SMGLCEMVDRYDELSCSAIAGPVGHQRGQIWDIEDLLLEGTSRRMCPYYAARDLVFFADV 332
Query: 740 VVYSYHYLLDPKIANVVSKE--LARSSVVVFDEAHNIDNVCVDSLSV 784
+Y YLLDP I + E L +++VVFDEAHN+ VC D+LS+
Sbjct: 333 NFCTYPYLLDPLIRHETKMEAALKNNAIVVFDEAHNVAAVCQDALSL 379
>gi|407036109|gb|EKE38008.1| hypothetical protein ENU1_179420 [Entamoeba nuttalli P19]
Length = 169
Score = 62.8 bits (151), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 56/91 (61%), Gaps = 5/91 (5%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKAL-DAKG----HCLLEMPSGTGKTTSLLSLIVAY 482
++ + + FPY++IYPEQY ++ + + D K ++EM +G+GKT S+++
Sbjct: 15 VNGIEIHFPYQFIYPEQYQFIKTVTSGVTDNKKPPHKQIIIEMGAGSGKTVSIITAAKGL 74
Query: 483 MNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513
++ +++ +YC+RT+ EI++V EL +L
Sbjct: 75 LDNQGSNISHTIYCTRTIDEIKRVFHELTKL 105
>gi|357622566|gb|EHJ73993.1| fanconi anemia group J protein [Danaus plexippus]
Length = 950
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 34 VCDFYEKFDAVGREAPL-APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYL 92
C FY ++ + + + I L +G++L CPY+L+++ A I+ Y+YL
Sbjct: 171 TCHFYNNVESKKDDRSVKGDDILDIEDLVSVGKKLKCCPYYLSKELKQDADIIFMPYNYL 230
Query: 93 LDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 140
LDPK EL +++++ DEAHN++ +C +S S++I RT + A+
Sbjct: 231 LDPKSRRANGVELM-NNIIILDEAHNVEKMCEESASLQI--RTTDVAL 275
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 689 VCDFYEKFDAVGREAPL-APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYL 747
C FY ++ + + + I L +G++L CPY+L+++ A I+ Y+YL
Sbjct: 171 TCHFYNNVESKKDDRSVKGDDILDIEDLVSVGKKLKCCPYYLSKELKQDADIIFMPYNYL 230
Query: 748 LDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 795
LDPK EL +++++ DEAHN++ +C +S S++I RT + A+
Sbjct: 231 LDPKSRRANGVELM-NNIIILDEAHNVEKMCEESASLQI--RTTDVAL 275
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 47/155 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY--- 482
+MI +PV FP+E Y Q +YM ++ ++L + +LE P+GTGKT SLL +A+
Sbjct: 4 IMIYGIPVTFPFE-PYEVQKSYMEKVIESLQNNTNAVLESPTGTGKTLSLLCSSLAWLLV 62
Query: 483 ------MNAH-----------------------------PLDVTKLLYCSRTVPEIEKVV 507
MNA + K++Y SRT ++ + +
Sbjct: 63 KKAQLQMNAQLGNFSEHSGYSNALRDNLKSNAGKSKDNTSWGMPKIIYSSRTHSQLTQAM 122
Query: 508 EELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
+EL R ++K VL SR +CIH E
Sbjct: 123 QELKRSSYRHVK--------AAVLGSRDQMCIHPE 149
Score = 46.2 bits (108), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S ++ R++ I + G+ ++ + V+PDG++ FF SY + W +GI ++
Sbjct: 515 LNSNYQNRNNPKYISSLGRTILSFSRVIPDGLLVFFPSYPIMTKCQEMWQAEGIWSSINS 574
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVD----GRC 669
K +F+E Q S+ + KI D G C
Sbjct: 575 IKPIFVEPQRKDTFNSIINDYYSKIRDPNSRGAC 608
>gi|297486418|ref|XP_002695655.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein,
partial [Bos taurus]
gi|296477040|tpg|DAA19155.1| TPA: BRCA1 interacting protein C-terminal helicase 1 [Bos taurus]
Length = 1169
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 29 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G+N C FY + + L + I +L +GR+L CPY+ AR+ + +A
Sbjct: 240 GKNGKSCYFYHGVHKMSDQHTLQTFQGMHKAWDIEELVSLGRKLKACPYYTARELMQNAD 299
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +
Sbjct: 300 IIFCPYNYLLDAQIRETMDINL-KEQVVILDEAHNIEDCARESASYSV 346
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 684 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G+N C FY + + L + I +L +GR+L CPY+ AR+ + +A
Sbjct: 240 GKNGKSCYFYHGVHKMSDQHTLQTFQGMHKAWDIEELVSLGRKLKACPYYTARELMQNAD 299
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +
Sbjct: 300 IIFCPYNYLLDAQIRETMDINL-KEQVVILDEAHNIEDCARESASYSV 346
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 554 NYGQLLVDIACVVPDG-VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVV 612
N Q+ V P G +C ++ + E+ FE +D++ G LL+ + + G++
Sbjct: 577 NNSQVWVGTIGSGPKGRSLC--ATFQHTET-FEFQDEV------GALLLSVCQTISQGIL 627
Query: 613 CFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
CF SY LE + W G+ NL+ K + +E Q
Sbjct: 628 CFLPSYKLLEKLKERWLSTGLWYNLELVKTVIVEPQGG 665
>gi|357159919|ref|XP_003578599.1| PREDICTED: uncharacterized protein LOC100829852 [Brachypodium
distachyon]
Length = 1225
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 13/143 (9%)
Query: 35 CDFYEKFDAVGREAPLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 90
C ++ + R L G V+ I L +GR++ CPYF A+ A++V Y+
Sbjct: 203 CPEFKNAQKLSRHPSLQKGGCYEVHDIEDLLRVGRQVKGCPYFAAQTMAETAQLVFCPYN 262
Query: 91 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 150
YL+ P + + +++ S+V+ DEAHNI+++ D+ SV ++ + + TL G L
Sbjct: 263 YLISPIVRRAMDIDIS-GSIVILDEAHNIEDIARDAGSVDVDEES-------LTTLAGEL 314
Query: 151 KEMKEADS-AKLREEYARLVEGL 172
+ ++ AK+ + ++EGL
Sbjct: 315 ANLATNEAVAKIYQPLHEVIEGL 337
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 13/143 (9%)
Query: 690 CDFYEKFDAVGREAPLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 745
C ++ + R L G V+ I L +GR++ CPYF A+ A++V Y+
Sbjct: 203 CPEFKNAQKLSRHPSLQKGGCYEVHDIEDLLRVGRQVKGCPYFAAQTMAETAQLVFCPYN 262
Query: 746 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 805
YL+ P + + +++ S+V+ DEAHNI+++ D+ SV ++ + + TL G L
Sbjct: 263 YLISPIVRRAMDIDIS-GSIVILDEAHNIEDIARDAGSVDVDEES-------LTTLAGEL 314
Query: 806 KEMKEADS-AKLREEYARLVEGL 827
+ ++ AK+ + ++EGL
Sbjct: 315 ANLATNEAVAKIYQPLHEVIEGL 337
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 63/160 (39%), Gaps = 55/160 (34%)
Query: 435 FPYEYIYPEQYAYMVELKKALD-----AKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPL- 488
FPY+ Y Q A+M + LD + H LLE P+GTGK+ SLL +A+ +PL
Sbjct: 39 FPYK-PYGTQLAFMGRVIATLDRARRQGRSHALLESPTGTGKSLSLLCSALAWQRHYPLR 97
Query: 489 ---------------------------------------DVTKLLYCSRTVPEIEKVVEE 509
+ + Y +RT +I +VV E
Sbjct: 98 APPAPPAADPFLHGGGFVPDDTQQQQATPGVPEKAAKKKNAPTIYYATRTHSQITQVVRE 157
Query: 510 LARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDI 549
L R Y ++ VL+SRK+ C++ D+I
Sbjct: 158 L-RKTSYRVRM--------AVLASRKHYCVNKNVCMSDNI 188
>gi|403274761|ref|XP_003929130.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Saimiri boliviensis boliviensis]
Length = 1252
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 13/126 (10%)
Query: 29 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G+N C FY + + L + I +L +G++L +CPY+ AR+ I A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLRVCPYYTARELIQDAD 363
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 136
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +R R +
Sbjct: 364 IIFCPYNYLLDAQIRETMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422
Query: 137 EKAVGN 142
+ V N
Sbjct: 423 DSMVNN 428
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 13/126 (10%)
Query: 684 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G+N C FY + + L + I +L +G++L +CPY+ AR+ I A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLRVCPYYTARELIQDAD 363
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 791
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +R R +
Sbjct: 364 IIFCPYNYLLDAQIRETMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422
Query: 792 EKAVGN 797
+ V N
Sbjct: 423 DSMVNN 428
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY---MN 484
I + + FPY+ YP Q A M + + L++K HCLLE P+G+GK+ +LL +A+ ++
Sbjct: 10 ISGVKINFPYK-AYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQSLS 68
Query: 485 AHPLD 489
P D
Sbjct: 69 GKPAD 73
>gi|297462303|ref|XP_002702129.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein [Bos
taurus]
Length = 1232
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 29 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G+N C FY + + L + I +L +GR+L CPY+ AR+ + +A
Sbjct: 303 GKNGKSCYFYHGVHKMSDQHTLQTFQGMHKAWDIEELVSLGRKLKACPYYTARELMQNAD 362
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +
Sbjct: 363 IIFCPYNYLLDAQIRETMDINL-KEQVVILDEAHNIEDCARESASYSV 409
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 684 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G+N C FY + + L + I +L +GR+L CPY+ AR+ + +A
Sbjct: 303 GKNGKSCYFYHGVHKMSDQHTLQTFQGMHKAWDIEELVSLGRKLKACPYYTARELMQNAD 362
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +
Sbjct: 363 IIFCPYNYLLDAQIRETMDINL-KEQVVILDEAHNIEDCARESASYSV 409
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY---MN 484
I + + FP + YP Q A M + + L++K HCLLE P+G+GK+ +LL +A+ ++
Sbjct: 9 IGGVKINFPCK-AYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCSALAWQQSLS 67
Query: 485 AHPLD 489
P+D
Sbjct: 68 GKPVD 72
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 554 NYGQLLVDIACVVPDG-VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVV 612
N Q+ V P G +C ++ + E+ FE +D++ G LL+ + + G++
Sbjct: 640 NNSQVWVGTIGSGPKGRSLC--ATFQHTET-FEFQDEV------GALLLSVCQTISQGIL 690
Query: 613 CFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
CF SY LE + W G+ NL+ K + +E Q
Sbjct: 691 CFLPSYKLLEKLKERWLSTGLWYNLELVKTVIVEPQGG 728
>gi|302776424|ref|XP_002971377.1| hypothetical protein SELMODRAFT_94786 [Selaginella moellendorffii]
gi|300161359|gb|EFJ27975.1| hypothetical protein SELMODRAFT_94786 [Selaginella moellendorffii]
Length = 792
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 7/147 (4%)
Query: 650 ALDSR-SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPG 708
AL SR + E+D + + GR + + K + V ++ +K +G E P+
Sbjct: 124 ALGSREQLCIEKDVQKLRGRAQNNACRTSCKARKCYHHTRVNEYLKKNPELGNE-PI--- 179
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
I L +GR G CPYFL+R+ ++ Y+YL+D + ++ +SV++F
Sbjct: 180 --DIEDLVRIGRTHGPCPYFLSRELHGSVDMIFVPYNYLIDKENRKSLTGIRWENSVIIF 237
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAV 795
DEAHN++ VC D+ S + T+ +
Sbjct: 238 DEAHNLEGVCADAASFDLPTTTLSACI 264
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 6/137 (4%)
Query: 4 ERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEM 63
E+D + + GR + + K + V ++ +K +G E P+ I L +
Sbjct: 134 EKDVQKLRGRAQNNACRTSCKARKCYHHTRVNEYLKKNPELGNE-PI-----DIEDLVRI 187
Query: 64 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 123
GR G CPYFL+R+ ++ Y+YL+D + ++ +SV++FDEAHN++ VC
Sbjct: 188 GRTHGPCPYFLSRELHGSVDMIFVPYNYLIDKENRKSLTGIRWENSVIIFDEAHNLEGVC 247
Query: 124 VDSLSVRINRRTIEKAV 140
D+ S + T+ +
Sbjct: 248 ADAASFDLPTTTLSACI 264
Score = 47.8 bits (112), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%)
Query: 569 GVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW 628
GVV S L S + TRD + G +V+ A +VPDG++ FF SY L S V SW
Sbjct: 470 GVVSSGPSGRALNSSYRTRDSPEYKNDLGNTIVNFARIVPDGLLVFFPSYYLLNSCVDSW 529
Score = 47.4 bits (111), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN----MTGLVLSSRKNLCIHSEF 543
L V ++ S T+ +E EL FD +++ I G+V S ++S +
Sbjct: 426 LGVRTIVLTSGTLSPLESFAIELKLPFDVRLENPHVIGANQIWVGVVSSGPSGRALNSSY 485
Query: 544 ETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFET 586
TRD + G +V+ A +VPDG++ FF SY L S ++
Sbjct: 486 RTRDSPEYKNDLGNTIVNFARIVPDGLLVFFPSYYLLNSCVDS 528
Score = 43.9 bits (102), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 35/137 (25%)
Query: 433 VFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY---------- 482
V FPY+ Y Q YM + AL + LLE P+GTGKT LL +A+
Sbjct: 12 VRFPYD-AYDCQLVYMESVIAALQKGQNALLESPTGTGKTLCLLCATLAWRESLAPPDRG 70
Query: 483 --MNAHP----LDVTK---------LLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMT 527
M+A LD T ++Y SRT ++++V+ EL + Y K
Sbjct: 71 RRMSASSQSSDLDPTSSQEANKLPTVIYASRTHSQLQQVIHEL-KATSYRPKM------- 122
Query: 528 GLVLSSRKNLCIHSEFE 544
+ L SR+ LCI + +
Sbjct: 123 -VALGSREQLCIEKDVQ 138
>gi|326912321|ref|XP_003202502.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Meleagris gallopavo]
Length = 896
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 570 VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWY 629
V+C S LE ++TRD ++ G++L ++ VVP GVVCFF SY Y + V A W
Sbjct: 655 VLCSGPSNQQLEFTYQTRDLPQMMDETGRILCNLCNVVPGGVVCFFPSYDYEKQVYAHWE 714
Query: 630 DQGIIDNLQKRKLLFIETQDA 650
G++ L +K +F E + A
Sbjct: 715 KTGLLTRLATKKKIFQEPKKA 735
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 34 VCDFY--EKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 91
VC FY E+ + E + V I +L +G+E CPY+ +R AI A++VV Y
Sbjct: 301 VCPFYSYEQMQFLRDEVLVE--VKDIEQLVTLGKETKACPYYGSRYAIAAAQLVVLPYQM 358
Query: 92 LLDPKIANVVSKELARSSVVVFDEAHN-IDNV-CVDSLSV 129
LL N L + VV+ DEAHN ID + C+ S V
Sbjct: 359 LLHEATRNAAGIIL-KDQVVIIDEAHNLIDTITCIHSAEV 397
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 689 VCDFY--EKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
VC FY E+ + E + V I +L +G+E CPY+ +R AI A++VV Y
Sbjct: 301 VCPFYSYEQMQFLRDEVLVE--VKDIEQLVTLGKETKACPYYGSRYAIAAAQLVVLPYQM 358
Query: 747 LLDPKIANVVSKELARSSVVVFDEAHN-IDNV-CVDSLSV 784
LL N L + VV+ DEAHN ID + C+ S V
Sbjct: 359 LLHEATRNAAGIIL-KDQVVIIDEAHNLIDTITCIHSAEV 397
Score = 43.1 bits (100), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 492 KLLYCSRTVPEIEKVVEELARLFDYYIKHN-EEINMTGLVL-SSRKNLCIHSEFETRDDI 549
+LL C+ P AR+ ++ H N+ +VL S N + ++TRD
Sbjct: 625 QLLSCAGVDP---------ARIMEFSCGHVIPPENILPIVLCSGPSNQQLEFTYQTRDLP 675
Query: 550 SVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVF 584
++ G++L ++ VVP GVVCFF SY Y + V+
Sbjct: 676 QMMDETGRILCNLCNVVPGGVVCFFPSYDYEKQVY 710
>gi|126340221|ref|XP_001373024.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
[Monodelphis domestica]
Length = 902
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE +++ RD ++ G++L ++ VVP GV
Sbjct: 645 VVEFSCGHVIPPDNILPIVLCSGPSNQPLEFIYQKRDLPQLMDEIGRILCNLCNVVPGGV 704
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L +K +F E A
Sbjct: 705 VCFFPSYDYLHKVQAHWAQSGLLTRLTVKKKIFQEPSRA 743
Score = 44.3 bits (103), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V I +L +G+E CPY+ +R AI A++VV Y LL +L + VV+
Sbjct: 332 VKDIEQLVVLGKEARACPYYGSRFAIPSAQLVVLPYQMLLHAATRQAAGIKL-QGQVVII 390
Query: 114 DEAHNI 119
DEAHN+
Sbjct: 391 DEAHNL 396
Score = 44.3 bits (103), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V I +L +G+E CPY+ +R AI A++VV Y LL +L + VV+
Sbjct: 332 VKDIEQLVVLGKEARACPYYGSRFAIPSAQLVVLPYQMLLHAATRQAAGIKL-QGQVVII 390
Query: 769 DEAHNI 774
DEAHN+
Sbjct: 391 DEAHNL 396
Score = 41.6 bits (96), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
++ RD ++ G++L ++ VVP GVVCFF SY YL V
Sbjct: 677 YQKRDLPQLMDEIGRILCNLCNVVPGGVVCFFPSYDYLHKV 717
>gi|354497402|ref|XP_003510809.1| PREDICTED: Fanconi anemia group J protein homolog [Cricetulus
griseus]
gi|344242804|gb|EGV98907.1| Fanconi anemia group J protein-like [Cricetulus griseus]
Length = 1166
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 35 CDFYEKFDAVGREAPLA--PGV---YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 89
C FY + + L PG+ + I +L +GR+L CPY+ AR+ I A I+ Y
Sbjct: 308 CYFYHGVHRINNQHTLQSFPGMSKAWDIEELVSLGRKLKACPYYTARELIDEADIIFCPY 367
Query: 90 HYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
+YLLD +I + +L + VV+ DEAHNI+ +S S +
Sbjct: 368 NYLLDAQIRESMDIKL-KDQVVILDEAHNIEECARESASYSV 408
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 690 CDFYEKFDAVGREAPLA--PGV---YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 744
C FY + + L PG+ + I +L +GR+L CPY+ AR+ I A I+ Y
Sbjct: 308 CYFYHGVHRINNQHTLQSFPGMSKAWDIEELVSLGRKLKACPYYTARELIDEADIIFCPY 367
Query: 745 HYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
+YLLD +I + +L + VV+ DEAHNI+ +S S +
Sbjct: 368 NYLLDAQIRESMDIKL-KDQVVILDEAHNIEECARESASYSV 408
Score = 46.2 bits (108), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
I + + FP + YP Q A M + + L++ HCLLE P+G+GK+ +LL +A+ +
Sbjct: 10 IGGVKINFPCK-AYPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAWQQS 66
>gi|58264204|ref|XP_569258.1| CHL1 helicase [Cryptococcus neoformans var. neoformans JEC21]
gi|57223908|gb|AAW41951.1| CHL1 helicase, putative [Cryptococcus neoformans var. neoformans
JEC21]
Length = 849
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
E F R+D +++ + G +L VVPDGVV F SY +L+ V A W G++ L +
Sbjct: 611 FEFKFGNRNDEALLTDLGAVLQATIGVVPDGVVVFLPSYAFLDKVRAFWTKSGLLQRLGE 670
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDR 680
RK LF E Q + D ++ RD + C++ ++S + R
Sbjct: 671 RKQLFYEPQTSGDVETIL--RDYALAISSCYATSTSGQKSR 709
Score = 46.6 bits (109), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V I + MG++ +CPY+ R+A+ ++IV Y+ LL + +L ++ VVV
Sbjct: 289 VKDIEDIVTMGKKSCVCPYYATRKAVKQSQIVTLPYNLLLQKNSHEALGIKL-KNQVVVI 347
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 144
DEAHN+ + + + + AV +Q
Sbjct: 348 DEAHNLIDTLLSIHCTTLTSTNLANAVSQLQ 378
Score = 46.6 bits (109), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V I + MG++ +CPY+ R+A+ ++IV Y+ LL + +L ++ VVV
Sbjct: 289 VKDIEDIVTMGKKSCVCPYYATRKAVKQSQIVTLPYNLLLQKNSHEALGIKL-KNQVVVI 347
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 799
DEAHN+ + + + + AV +Q
Sbjct: 348 DEAHNLIDTLLSIHCTTLTSTNLANAVSQLQ 378
>gi|391338586|ref|XP_003743639.1| PREDICTED: LOW QUALITY PROTEIN: regulator of telomere elongation
helicase 1 homolog [Metaseiulus occidentalis]
Length = 1132
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 2/132 (1%)
Query: 31 NIPVCDFYEKFDA-VGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 89
N C+++ ++ V E V I L +G++ CPY+ + + +V Y
Sbjct: 189 NSRACEYHRNYETKVSHEDFTTNHVVDIEDLVTLGKKHCCCPYYATKILRKKSDVVFVPY 248
Query: 90 HYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGT 149
+Y++DP L R+ +V+FDEAHNI++ C DSLS ++ + A+ I +
Sbjct: 249 NYVVDPSTRRAQGIGLERN-IVIFDEAHNIESFCEDSLSFAMSSTDMAGAMKEIDAVAQN 307
Query: 150 LKEMKEADSAKL 161
L +EAD+ +
Sbjct: 308 LANSEEADNMEF 319
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 2/132 (1%)
Query: 686 NIPVCDFYEKFDA-VGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 744
N C+++ ++ V E V I L +G++ CPY+ + + +V Y
Sbjct: 189 NSRACEYHRNYETKVSHEDFTTNHVVDIEDLVTLGKKHCCCPYYATKILRKKSDVVFVPY 248
Query: 745 HYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGT 804
+Y++DP L R+ +V+FDEAHNI++ C DSLS ++ + A+ I +
Sbjct: 249 NYVVDPSTRRAQGIGLERN-IVIFDEAHNIESFCEDSLSFAMSSTDMAGAMKEIDAVAQN 307
Query: 805 LKEMKEADSAKL 816
L +EAD+ +
Sbjct: 308 LANSEEADNMEF 319
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 582 SVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRK 641
S ++ R IR+ G L +++ VP GV+ FF S+ ++++V W + GI+ L+ K
Sbjct: 519 STYQNRSSEKYIRSLGLTLNEMSRRVPHGVLVFFPSFACMKALVEKWEEFGIMRRLKAHK 578
Query: 642 LLFIE 646
+L E
Sbjct: 579 MLLQE 583
>gi|148683832|gb|EDL15779.1| BRCA1 interacting protein C-terminal helicase 1, isoform CRA_a [Mus
musculus]
Length = 901
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 29 GENIPVCDFYEKFDAVGREAPLA-----PGVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G++ C FY + + L + I +L +GR+L CPY+ AR+ I A
Sbjct: 32 GKHGKSCYFYHGVHKISNQQTLQHLQGMSRAWDIEELVSLGRKLKACPYYTARELIEDAD 91
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
IV Y+YLLD +I + +L + VV+ DEAHNI++ +S S +
Sbjct: 92 IVFCPYNYLLDSQIRETMDIKL-KGQVVILDEAHNIEDCARESASYSV 138
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 684 GENIPVCDFYEKFDAVGREAPLA-----PGVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G++ C FY + + L + I +L +GR+L CPY+ AR+ I A
Sbjct: 32 GKHGKSCYFYHGVHKISNQQTLQHLQGMSRAWDIEELVSLGRKLKACPYYTARELIEDAD 91
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
IV Y+YLLD +I + +L + VV+ DEAHNI++ +S S +
Sbjct: 92 IVFCPYNYLLDSQIRETMDIKL-KGQVVILDEAHNIEDCARESASYSV 138
>gi|363728123|ref|XP_416375.3| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 [Gallus
gallus]
Length = 941
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 570 VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWY 629
++C S LE ++TRD ++ G++L ++ VVP GVVCFF SY Y + V A W
Sbjct: 700 ILCSGPSNQQLEFTYQTRDLPQMMDETGRILCNLCNVVPGGVVCFFPSYDYEKQVYAHWE 759
Query: 630 DQGIIDNLQKRKLLFIETQDA 650
G++ L +K +F E + A
Sbjct: 760 KTGLLTRLATKKKIFQEPKKA 780
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V I +L +G+E CPY+ +R AI A++VV Y LL + L + VV+
Sbjct: 366 VKDIEQLVTLGKETKACPYYGSRYAIPAAQLVVLPYQMLLHEATRSAAGIIL-KDQVVII 424
Query: 114 DEAHN-IDNV-CVDSLSV 129
DEAHN ID + C+ S V
Sbjct: 425 DEAHNLIDTITCIYSAEV 442
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V I +L +G+E CPY+ +R AI A++VV Y LL + L + VV+
Sbjct: 366 VKDIEQLVTLGKETKACPYYGSRYAIPAAQLVVLPYQMLLHEATRSAAGIIL-KDQVVII 424
Query: 769 DEAHN-IDNV-CVDSLSV 784
DEAHN ID + C+ S V
Sbjct: 425 DEAHNLIDTITCIYSAEV 442
Score = 43.5 bits (101), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVF 584
++ S N + ++TRD ++ G++L ++ VVP GVVCFF SY Y + V+
Sbjct: 700 ILCSGPSNQQLEFTYQTRDLPQMMDETGRILCNLCNVVPGGVVCFFPSYDYEKQVY 755
>gi|354610795|ref|ZP_09028751.1| type III restriction protein res subunit [Halobacterium sp. DL1]
gi|353195615|gb|EHB61117.1| type III restriction protein res subunit [Halobacterium sp. DL1]
Length = 796
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 66 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVD 125
E G CP+ + + + HA +V+ +Y++L DPK + L + VV DEAH ++ D
Sbjct: 255 EYGTCPHRVQQVLLDHADVVIGNYNHLFDPKTRGLTEHLLDEQTFVVVDEAHRLEERVRD 314
Query: 126 SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAK 160
LS R+ R T+ +A +++TL L E ++++S +
Sbjct: 315 LLSDRVGRHTLARARNDVRTL---LTEARQSESNR 346
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 721 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVD 780
E G CP+ + + + HA +V+ +Y++L DPK + L + VV DEAH ++ D
Sbjct: 255 EYGTCPHRVQQVLLDHADVVIGNYNHLFDPKTRGLTEHLLDEQTFVVVDEAHRLEERVRD 314
Query: 781 SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAK 815
LS R+ R T+ +A +++TL L E ++++S +
Sbjct: 315 LLSDRVGRHTLARARNDVRTL---LTEARQSESNR 346
>gi|339251144|ref|XP_003373055.1| fanconi anemia group J protein [Trichinella spiralis]
gi|316969101|gb|EFV53261.1| fanconi anemia group J protein [Trichinella spiralis]
Length = 1052
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Query: 55 YSITKLKEMGRELGLCPYFLARQAIIH-AKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
+ I +L E GR+L CPYF + + A ++ Y YL+DP + + + L + V++F
Sbjct: 512 WDIEELVEAGRKLNFCPYFASVDNMYQDANLIFCPYGYLIDPVVRSSSNINL-KGQVIIF 570
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEA 156
DEAHN+++ C + S +I ++ + AV + ++E + E K++
Sbjct: 571 DEAHNMEDECCEKASFQITKQELVDAVEYLSSIEELVPESKKS 613
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Query: 710 YSITKLKEMGRELGLCPYFLARQAIIH-AKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
+ I +L E GR+L CPYF + + A ++ Y YL+DP + + + L + V++F
Sbjct: 512 WDIEELVEAGRKLNFCPYFASVDNMYQDANLIFCPYGYLIDPVVRSSSNINL-KGQVIIF 570
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEA 811
DEAHN+++ C + S +I ++ + AV + ++E + E K++
Sbjct: 571 DEAHNMEDECCEKASFQITKQELVDAVEYLSSIEELVPESKKS 613
Score = 40.4 bits (93), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 597 GQLLVDIACVVPDGVVCFFTSYLYLESVVASW 628
G+LL++I V PDGV+CF SY +++ ++ W
Sbjct: 816 GRLLIEICKVTPDGVLCFLPSYTFIDCLLTRW 847
>gi|74138560|dbj|BAE41179.1| unnamed protein product [Mus musculus]
gi|74216986|dbj|BAE26603.1| unnamed protein product [Mus musculus]
Length = 898
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 29 GENIPVCDFYEKFDAVGREAPLA-----PGVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G++ C FY + + L + I +L +GR+L CPY+ AR+ I A
Sbjct: 307 GKHGKSCYFYHGVHKISNQQTLQHLQGMSRAWDIEELVSLGRKLKACPYYTARELIEDAD 366
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
IV Y+YLLD +I + +L + VV+ DEAHNI++ +S S +
Sbjct: 367 IVFCPYNYLLDSQIRETMDIKL-KGQVVILDEAHNIEDCARESASYSV 413
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 684 GENIPVCDFYEKFDAVGREAPLA-----PGVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G++ C FY + + L + I +L +GR+L CPY+ AR+ I A
Sbjct: 307 GKHGKSCYFYHGVHKISNQQTLQHLQGMSRAWDIEELVSLGRKLKACPYYTARELIEDAD 366
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
IV Y+YLLD +I + +L + VV+ DEAHNI++ +S S +
Sbjct: 367 IVFCPYNYLLDSQIRETMDIKL-KGQVVILDEAHNIEDCARESASYSV 413
Score = 46.6 bits (109), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
I + + FP YP Q A M + + L++ HCLLE P+G+GK+ +LL +A+ +
Sbjct: 10 IGGVKIHFPCR-AYPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAWQQS 66
>gi|363741498|ref|XP_417435.3| PREDICTED: regulator of telomere elongation helicase 1 [Gallus
gallus]
Length = 1220
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
C FY + E L + I L + G + CPY+L+R A I+ Y+YLL
Sbjct: 171 ACHFYNNVEEKSTEKGLMDSIMDIEDLVKNGSKHRACPYYLSRSLKQQADIIFMPYNYLL 230
Query: 94 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 140
D K + EL + +VV+ DEAHN++ +C +S S + + A+
Sbjct: 231 DAKSRRAHNIEL-KGTVVILDEAHNVERLCEESSSFDLTAYDLASAI 276
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
C FY + E L + I L + G + CPY+L+R A I+ Y+YLL
Sbjct: 171 ACHFYNNVEEKSTEKGLMDSIMDIEDLVKNGSKHRACPYYLSRSLKQQADIIFMPYNYLL 230
Query: 749 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 795
D K + EL + +VV+ DEAHN++ +C +S S + + A+
Sbjct: 231 DAKSRRAHNIEL-KGTVVILDEAHNVERLCEESSSFDLTAYDLASAI 276
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
QL V I PDG V L S +E R + + G+ + ++ VVP G++ FF
Sbjct: 486 QLWVGIIPKGPDGTV--------LNSAYERRFSEDYLSSLGKTIGNLVRVVPHGLLVFFP 537
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
SY ++ + W + +++ K +F+E ++
Sbjct: 538 SYPVMDKSLEYWREHDFAKRIEEVKPMFVEPRN 570
>gi|410212712|gb|JAA03575.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 [Pan troglodytes]
Length = 906
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE F+ R+ ++ G++L ++ VV GV
Sbjct: 644 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVSGGV 703
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L RK +F E + A
Sbjct: 704 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 742
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 30 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTL 146
Y LL L + VV+ DEAHN+ + SV ++ + +A +Q +
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHSQLLQYM 426
Query: 147 EGTLKEMKEADSAKLRE 163
E K +K + L++
Sbjct: 427 EQYGKRLKAKNLMYLKQ 443
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 685 ENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
E C FY + +G R+ LA V I +L +G+E CPY+ +R AI A++VV
Sbjct: 310 EKQAACPFY-NHEQMGLLRDEALAE-VKDIEQLLALGKEARACPYYGSRLAIPAAQLVVL 367
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTL 801
Y LL L + VV+ DEAHN+ + SV ++ + +A +Q +
Sbjct: 368 PYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAHSQLLQYM 426
Query: 802 EGTLKEMKEADSAKLRE 818
E K +K + L++
Sbjct: 427 EQYGKRLKAKNLMYLKQ 443
>gi|302756033|ref|XP_002961440.1| hypothetical protein SELMODRAFT_77246 [Selaginella moellendorffii]
gi|300170099|gb|EFJ36700.1| hypothetical protein SELMODRAFT_77246 [Selaginella moellendorffii]
Length = 787
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 104/243 (42%), Gaps = 31/243 (12%)
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I L +GR G CPYFL+R+ ++ Y+YL+D + ++ +SV++FDEA
Sbjct: 181 IEDLVRIGRTHGPCPYFLSRELHGSVDMIFVPYNYLIDKENRKSLTGIRWENSVIIFDEA 240
Query: 117 HNIDNVCVDSLSVRINRRTIEKAVG------NIQTLEGTLKEMKEADSAKLREEYARLVE 170
HN++ VC D+ S + T+ + + TL+ ++ AD + E +A L
Sbjct: 241 HNLEGVCADAASFDLPTTTLSACISEAGQCVELATLQRSISN--NADKSGDSENFALLKG 298
Query: 171 GLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVV 230
L S + D+ + L G R + FL +T + +
Sbjct: 299 ALLLELSKKIDDISFDSEEL----------GFTRPGSYIYDFLSELKITWETSTMLTDTI 348
Query: 231 QESPATFLKDISSKPAPS---------MISEAYRYIFSTEEHLKT---RLRVQQVVQESP 278
+S + L++ SS P+ ++ +A+R IF ++ R+ V +V +
Sbjct: 349 -DSAISLLQEDSSAPSGKPKTSTCKLELLRDAFRTIFRGKDSTHATCYRVSVFKVCDKKS 407
Query: 279 ATF 281
TF
Sbjct: 408 RTF 410
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I L +GR G CPYFL+R+ ++ Y+YL+D + ++ +SV++FDEA
Sbjct: 181 IEDLVRIGRTHGPCPYFLSRELHGSVDMIFVPYNYLIDKENRKSLTGIRWENSVIIFDEA 240
Query: 772 HNIDNVCVDSLSVRINRRTIEKAV 795
HN++ VC D+ S + T+ +
Sbjct: 241 HNLEGVCADAASFDLPTTTLSACI 264
Score = 46.2 bits (108), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%)
Query: 569 GVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW 628
GVV S L S + TRD + G +V+ A +VP+G++ FF SY L S V SW
Sbjct: 471 GVVSSGPSGRALNSSYRTRDSPEYKNDLGNTIVNFARIVPNGLLVFFPSYYLLNSCVDSW 530
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN----MTGLVLSSRKNLCIHSEF 543
L V ++ S T+ +E EL FD +++ I G+V S ++S +
Sbjct: 427 LGVRTIVLTSGTLSPLESFAIELKLPFDVRLENPHVIGANQIWVGVVSSGPSGRALNSSY 486
Query: 544 ETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFET 586
TRD + G +V+ A +VP+G++ FF SY L S ++
Sbjct: 487 RTRDSPEYKNDLGNTIVNFARIVPNGLLVFFPSYYLLNSCVDS 529
Score = 44.3 bits (103), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 35/137 (25%)
Query: 433 VFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY---------- 482
V FPY+ Y Q YM + AL + LLE P+GTGKT LL +A+
Sbjct: 12 VRFPYD-AYDCQLVYMESVIAALQKGQNALLESPTGTGKTLCLLCATLAWRESLAPPDRG 70
Query: 483 --MNAHP----LDVTK---------LLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMT 527
M+A LD T ++Y SRT ++++V+ EL + Y K
Sbjct: 71 RRMSASSQSSDLDPTSSQEANKLPTVIYASRTHSQLQQVIHEL-KATSYRPKM------- 122
Query: 528 GLVLSSRKNLCIHSEFE 544
+ L SR+ LCI + +
Sbjct: 123 -VALGSREQLCIEKDVQ 138
>gi|30795235|ref|NP_840094.1| Fanconi anemia group J protein homolog [Mus musculus]
gi|78099253|sp|Q5SXJ3.1|FANCJ_MOUSE RecName: Full=Fanconi anemia group J protein homolog; Short=Protein
FACJ; AltName: Full=ATP-dependent RNA helicase BRIP1;
AltName: Full=BRCA1-associated C-terminal helicase 1;
AltName: Full=BRCA1-interacting protein C-terminal
helicase 1; Short=BRCA1-interacting protein 1
gi|62740250|gb|AAH94252.1| BRCA1 interacting protein C-terminal helicase 1 [Mus musculus]
Length = 1174
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 29 GENIPVCDFYEKFDAVGREAPLA-----PGVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G++ C FY + + L + I +L +GR+L CPY+ AR+ I A
Sbjct: 307 GKHGKSCYFYHGVHKISNQQTLQHLQGMSRAWDIEELVSLGRKLKACPYYTARELIEDAD 366
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
IV Y+YLLD +I + +L + VV+ DEAHNI++ +S S +
Sbjct: 367 IVFCPYNYLLDSQIRETMDIKL-KGQVVILDEAHNIEDCARESASYSV 413
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 684 GENIPVCDFYEKFDAVGREAPLA-----PGVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G++ C FY + + L + I +L +GR+L CPY+ AR+ I A
Sbjct: 307 GKHGKSCYFYHGVHKISNQQTLQHLQGMSRAWDIEELVSLGRKLKACPYYTARELIEDAD 366
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
IV Y+YLLD +I + +L + VV+ DEAHNI++ +S S +
Sbjct: 367 IVFCPYNYLLDSQIRETMDIKL-KGQVVILDEAHNIEDCARESASYSV 413
Score = 46.6 bits (109), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
I + + FP YP Q A M + + L++ HCLLE P+G+GK+ +LL +A+ +
Sbjct: 10 IGGVKIHFPCR-AYPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAWQQS 66
>gi|148683833|gb|EDL15780.1| BRCA1 interacting protein C-terminal helicase 1, isoform CRA_b [Mus
musculus]
Length = 1180
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 29 GENIPVCDFYEKFDAVGREAPLA-----PGVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G++ C FY + + L + I +L +GR+L CPY+ AR+ I A
Sbjct: 313 GKHGKSCYFYHGVHKISNQQTLQHLQGMSRAWDIEELVSLGRKLKACPYYTARELIEDAD 372
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
IV Y+YLLD +I + +L + VV+ DEAHNI++ +S S +
Sbjct: 373 IVFCPYNYLLDSQIRETMDIKL-KGQVVILDEAHNIEDCARESASYSV 419
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 684 GENIPVCDFYEKFDAVGREAPLA-----PGVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G++ C FY + + L + I +L +GR+L CPY+ AR+ I A
Sbjct: 313 GKHGKSCYFYHGVHKISNQQTLQHLQGMSRAWDIEELVSLGRKLKACPYYTARELIEDAD 372
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
IV Y+YLLD +I + +L + VV+ DEAHNI++ +S S +
Sbjct: 373 IVFCPYNYLLDSQIRETMDIKL-KGQVVILDEAHNIEDCARESASYSV 419
Score = 46.6 bits (109), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
I + + FP YP Q A M + + L++ HCLLE P+G+GK+ +LL +A+ +
Sbjct: 16 IGGVKIHFPCR-AYPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAWQQS 72
>gi|297272722|ref|XP_002808171.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein-like
[Macaca mulatta]
Length = 1151
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 6/131 (4%)
Query: 6 DGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAP-----GVYSITKL 60
D K+ G+ L S S + + C FY + + L + I +L
Sbjct: 184 DAKVDSGKTVKLNSPSGKINSFSPRKGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEEL 243
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+G++L CPY+ AR+ I A I+ Y+YLLD +I + L + VV+ DEAHNI+
Sbjct: 244 VSLGKKLKACPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIE 302
Query: 121 NVCVDSLSVRI 131
+ +S S I
Sbjct: 303 DCARESASYSI 313
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 6/131 (4%)
Query: 661 DGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAP-----GVYSITKL 715
D K+ G+ L S S + + C FY + + L + I +L
Sbjct: 184 DAKVDSGKTVKLNSPSGKINSFSPRKGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEEL 243
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
+G++L CPY+ AR+ I A I+ Y+YLLD +I + L + VV+ DEAHNI+
Sbjct: 244 VSLGKKLKACPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIE 302
Query: 776 NVCVDSLSVRI 786
+ +S S I
Sbjct: 303 DCARESASYSI 313
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
I + ++FPY+ YP Q A M + + L++K HCLLE P+G+GK+ +LL +A+ +
Sbjct: 10 IGGVKIYFPYK-AYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQS 66
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKL 642
FE +D++ G LL+ + V G++CF SY LE + W G+ NL+ K
Sbjct: 572 TFEFQDEV------GALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKT 625
Query: 643 LFIETQDA 650
+ +E Q
Sbjct: 626 VIVEPQGG 633
>gi|345805276|ref|XP_852649.2| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Canis lupus familiaris]
Length = 1247
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 29 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G+N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 303 GKNGKSCYFYHGVHKISNQHTLQTLQGMCKAWDIEELVSLGKKLKACPYYTARELIEDAH 362
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 136
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +R R +
Sbjct: 363 IIFCPYNYLLDAQIRESMDINL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 421
Query: 137 EKAVGN 142
+ V N
Sbjct: 422 DSMVNN 427
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 684 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G+N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 303 GKNGKSCYFYHGVHKISNQHTLQTLQGMCKAWDIEELVSLGKKLKACPYYTARELIEDAH 362
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 791
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +R R +
Sbjct: 363 IIFCPYNYLLDAQIRESMDINL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 421
Query: 792 EKAVGN 797
+ V N
Sbjct: 422 DSMVNN 427
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
I + + FPY+ YP Q A M + + L++K HCLLE P+G+GK+ +LL +A+ +
Sbjct: 10 IGGVKITFPYK-AYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCSTLAWQQS 66
Score = 40.8 bits (94), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 554 NYGQLLVDIACVVPDG-VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVV 612
N Q+ V P G +C ++ + E+ FE +D++ G LL+ + V G++
Sbjct: 641 NNSQVWVGTIGSGPKGRNLC--ATFQHTET-FEFQDEV------GALLLSVCQTVNQGIL 691
Query: 613 CFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
CF SY LE + W G+ NL+ K + +E Q
Sbjct: 692 CFLPSYKLLEKLKERWLYTGLWHNLELVKTVIVEPQGG 729
>gi|385773760|ref|YP_005646327.1| XPD repair helicase [Sulfolobus islandicus HVE10/4]
gi|385776395|ref|YP_005648963.1| XPD repair helicase [Sulfolobus islandicus REY15A]
gi|323475143|gb|ADX85749.1| XPD repair helicase [Sulfolobus islandicus REY15A]
gi|323477875|gb|ADX83113.1| XPD repair helicase [Sulfolobus islandicus HVE10/4]
Length = 550
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C+ E F+A P V S+ +LKE G++LG CPY+ ++I A +V+ +Y YL
Sbjct: 99 CNGCEIFNASTITITDPPKV-SLNRLKEEGKKLGFCPYYSLLESIKSADVVLLTYPYLFI 157
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI--QTLEGTLKE 152
P + + VVV DEAHNI+N+ + ++N+R IE A+ Q + L+
Sbjct: 158 PWLRESLDINW-EDYVVVIDEAHNIENIS-NIEEKKLNKRIIEMAISQTKSQNVRLILER 215
Query: 153 MKE 155
+KE
Sbjct: 216 LKE 218
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C+ E F+A P V S+ +LKE G++LG CPY+ ++I A +V+ +Y YL
Sbjct: 99 CNGCEIFNASTITITDPPKV-SLNRLKEEGKKLGFCPYYSLLESIKSADVVLLTYPYLFI 157
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI--QTLEGTLKE 807
P + + VVV DEAHNI+N+ + ++N+R IE A+ Q + L+
Sbjct: 158 PWLRESLDINW-EDYVVVIDEAHNIENIS-NIEEKKLNKRIIEMAISQTKSQNVRLILER 215
Query: 808 MKE 810
+KE
Sbjct: 216 LKE 218
>gi|229585321|ref|YP_002843823.1| DEAD/DEAH box helicase [Sulfolobus islandicus M.16.27]
gi|228020371|gb|ACP55778.1| DEAD_2 domain protein [Sulfolobus islandicus M.16.27]
Length = 550
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C+ E F+A P V S+ +LKE G++LG CPY+ ++I A +V+ +Y YL
Sbjct: 99 CNGCEIFNASTITITDPPKV-SLNRLKEEGKKLGFCPYYSLLESIKSADVVLLTYPYLFI 157
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI--QTLEGTLKE 152
P + + VVV DEAHNI+N+ + ++N+R IE A+ Q + L+
Sbjct: 158 PWLRESLDINW-EDYVVVIDEAHNIENIS-NIEEKKLNKRIIEMAISQTKSQNVRLILER 215
Query: 153 MKE 155
+KE
Sbjct: 216 LKE 218
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C+ E F+A P V S+ +LKE G++LG CPY+ ++I A +V+ +Y YL
Sbjct: 99 CNGCEIFNASTITITDPPKV-SLNRLKEEGKKLGFCPYYSLLESIKSADVVLLTYPYLFI 157
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI--QTLEGTLKE 807
P + + VVV DEAHNI+N+ + ++N+R IE A+ Q + L+
Sbjct: 158 PWLRESLDINW-EDYVVVIDEAHNIENIS-NIEEKKLNKRIIEMAISQTKSQNVRLILER 215
Query: 808 MKE 810
+KE
Sbjct: 216 LKE 218
>gi|227828052|ref|YP_002829832.1| DEAD/DEAH box helicase [Sulfolobus islandicus M.14.25]
gi|227830789|ref|YP_002832569.1| DEAD/DEAH box helicase [Sulfolobus islandicus L.S.2.15]
gi|229579685|ref|YP_002838084.1| DEAD/DEAH box helicase [Sulfolobus islandicus Y.G.57.14]
gi|238620282|ref|YP_002915108.1| DEAD/DEAH box helicase [Sulfolobus islandicus M.16.4]
gi|227457237|gb|ACP35924.1| DEAD_2 domain protein [Sulfolobus islandicus L.S.2.15]
gi|227459848|gb|ACP38534.1| DEAD_2 domain protein [Sulfolobus islandicus M.14.25]
gi|228010400|gb|ACP46162.1| DEAD_2 domain protein [Sulfolobus islandicus Y.G.57.14]
gi|238381352|gb|ACR42440.1| DEAD_2 domain protein [Sulfolobus islandicus M.16.4]
Length = 550
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C+ E F+A P V S+ +LKE G++LG CPY+ ++I A +V+ +Y YL
Sbjct: 99 CNGCEIFNASTITITDPPKV-SLNRLKEEGKKLGFCPYYSLLESIKSADVVLLTYPYLFI 157
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI--QTLEGTLKE 152
P + + VVV DEAHNI+N+ + ++N+R IE A+ Q + L+
Sbjct: 158 PWLRESLDINW-EDYVVVIDEAHNIENIS-NIEEKKLNKRIIEMAISQTKSQNVRLILER 215
Query: 153 MKE 155
+KE
Sbjct: 216 LKE 218
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C+ E F+A P V S+ +LKE G++LG CPY+ ++I A +V+ +Y YL
Sbjct: 99 CNGCEIFNASTITITDPPKV-SLNRLKEEGKKLGFCPYYSLLESIKSADVVLLTYPYLFI 157
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI--QTLEGTLKE 807
P + + VVV DEAHNI+N+ + ++N+R IE A+ Q + L+
Sbjct: 158 PWLRESLDINW-EDYVVVIDEAHNIENIS-NIEEKKLNKRIIEMAISQTKSQNVRLILER 215
Query: 808 MKE 810
+KE
Sbjct: 216 LKE 218
>gi|426238589|ref|XP_004013233.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Ovis aries]
Length = 1234
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 29 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G+N C FY + + L + I +L +GR+L CPY+ AR+ + A
Sbjct: 302 GKNGKSCYFYHGVHKISDQHTLQTFQGMHKAWDIEELVSLGRKLKACPYYTARELMQDAD 361
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +
Sbjct: 362 IIFCPYNYLLDAQIRETMDINL-KEQVVILDEAHNIEDCARESASYSV 408
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 684 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G+N C FY + + L + I +L +GR+L CPY+ AR+ + A
Sbjct: 302 GKNGKSCYFYHGVHKISDQHTLQTFQGMHKAWDIEELVSLGRKLKACPYYTARELMQDAD 361
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +
Sbjct: 362 IIFCPYNYLLDAQIRETMDINL-KEQVVILDEAHNIEDCARESASYSV 408
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY---MN 484
I + + FP + YP Q A M + + L++K HCLLE P+G+GK+ +LL +A+ ++
Sbjct: 8 IGGVKINFPCK-AYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCSALAWQQSLS 66
Query: 485 AHPLD 489
P+D
Sbjct: 67 GKPVD 71
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 554 NYGQLLVDIACVVPDG-VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVV 612
N Q+ V P G +C ++ + E+ FE +D++ G LL+ + V G++
Sbjct: 640 NNSQVWVGTIGSGPKGRNLC--ATFQHTET-FEFQDEV------GALLLSVCQTVSQGIL 690
Query: 613 CFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
CF SY LE + W G+ NL+ K + +E Q
Sbjct: 691 CFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGG 728
>gi|260808249|ref|XP_002598920.1| hypothetical protein BRAFLDRAFT_79851 [Branchiostoma floridae]
gi|229284195|gb|EEN54932.1| hypothetical protein BRAFLDRAFT_79851 [Branchiostoma floridae]
Length = 1352
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 74/145 (51%), Gaps = 8/145 (5%)
Query: 9 IVDGRCHSLTSSSVRDRHKAG----ENIPVCDFYEKFDAVGREAPL---APGVYSITKLK 61
I+ R H+ ++S+R G + C F+ + +A + + I +L
Sbjct: 256 ILSSREHTCINASIRGNKNDGCRELLDHKACSFHHNVVRMSNQAQIQYRGLSAWDIEELV 315
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121
++G+++ CPY+ AR+ ++ A IV Y+YL+DP I + L ++ V+V DEAHNI++
Sbjct: 316 KLGKKIKACPYYSARELMLEADIVFCPYNYLVDPVIRENMQISL-KNHVIVLDEAHNIED 374
Query: 122 VCVDSLSVRINRRTIEKAVGNIQTL 146
++ S + ++ + ++ L
Sbjct: 375 SAREAASFSMTEDQLDNCMSELENL 399
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 74/145 (51%), Gaps = 8/145 (5%)
Query: 664 IVDGRCHSLTSSSVRDRHKAG----ENIPVCDFYEKFDAVGREAPL---APGVYSITKLK 716
I+ R H+ ++S+R G + C F+ + +A + + I +L
Sbjct: 256 ILSSREHTCINASIRGNKNDGCRELLDHKACSFHHNVVRMSNQAQIQYRGLSAWDIEELV 315
Query: 717 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 776
++G+++ CPY+ AR+ ++ A IV Y+YL+DP I + L ++ V+V DEAHNI++
Sbjct: 316 KLGKKIKACPYYSARELMLEADIVFCPYNYLVDPVIRENMQISL-KNHVIVLDEAHNIED 374
Query: 777 VCVDSLSVRINRRTIEKAVGNIQTL 801
++ S + ++ + ++ L
Sbjct: 375 SAREAASFSMTEDQLDNCMSELENL 399
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
I + V FP YP Q A M ++ + L+ + +CLLE P+G+GK+ +LL +A+ A
Sbjct: 13 ISGVNVQFPCN-AYPTQIAMMHKILQGLEREQNCLLESPTGSGKSLALLCSCLAWQTA 69
>gi|74217142|dbj|BAC34798.2| unnamed protein product [Mus musculus]
Length = 577
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 29 GENIPVCDFYEKFDAVGREAPLA-----PGVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G++ C FY + + L + I +L +GR+L CPY+ AR+ I A
Sbjct: 307 GKHGKSCYFYHGVHKISNQQTLQHLQGMSRAWDIEELVSLGRKLKACPYYTARELIEDAD 366
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
IV Y+YLLD +I + +L + VV+ DEAHNI++ +S S +
Sbjct: 367 IVFCPYNYLLDSQIRETMDIKL-KGQVVILDEAHNIEDCARESASYSV 413
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 684 GENIPVCDFYEKFDAVGREAPLA-----PGVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G++ C FY + + L + I +L +GR+L CPY+ AR+ I A
Sbjct: 307 GKHGKSCYFYHGVHKISNQQTLQHLQGMSRAWDIEELVSLGRKLKACPYYTARELIEDAD 366
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
IV Y+YLLD +I + +L + VV+ DEAHNI++ +S S +
Sbjct: 367 IVFCPYNYLLDSQIRETMDIKL-KGQVVILDEAHNIEDCARESASYSV 413
Score = 46.2 bits (108), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
I + + FP YP Q A M + + L++ HCLLE P+G+GK+ +LL +A+ +
Sbjct: 10 IGGVKIHFPCR-AYPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAWQQS 66
>gi|284998303|ref|YP_003420071.1| DEAD/DEAH box helicase [Sulfolobus islandicus L.D.8.5]
gi|284446199|gb|ADB87701.1| DEAD_2 domain protein [Sulfolobus islandicus L.D.8.5]
Length = 550
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C+ E F+A P V S+ +LKE G++LG CPY+ ++I A +V+ +Y YL
Sbjct: 99 CNGCEIFNASTITITDPPKV-SLNRLKEEGKKLGFCPYYSLLESIKSADVVLLTYPYLFI 157
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI--QTLEGTLKE 152
P + + VVV DEAHNI+N+ + ++N+R IE A+ Q + L+
Sbjct: 158 PWLRESLDINW-EDYVVVIDEAHNIENIS-NIEEKKLNKRIIEMAISQTKSQNVRLILER 215
Query: 153 MKE 155
+KE
Sbjct: 216 LKE 218
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C+ E F+A P V S+ +LKE G++LG CPY+ ++I A +V+ +Y YL
Sbjct: 99 CNGCEIFNASTITITDPPKV-SLNRLKEEGKKLGFCPYYSLLESIKSADVVLLTYPYLFI 157
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI--QTLEGTLKE 807
P + + VVV DEAHNI+N+ + ++N+R IE A+ Q + L+
Sbjct: 158 PWLRESLDINW-EDYVVVIDEAHNIENIS-NIEEKKLNKRIIEMAISQTKSQNVRLILER 215
Query: 808 MKE 810
+KE
Sbjct: 216 LKE 218
>gi|414881660|tpg|DAA58791.1| TPA: hypothetical protein ZEAMMB73_410850, partial [Zea mays]
Length = 941
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 7 GKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRE 66
G+ + CH L + + N V +F + +G E + I L +GR
Sbjct: 153 GRAQNNACHFLCK-----KRRCPHNNHVAEFIKNKPELGNEP------FDIEDLINIGRH 201
Query: 67 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 126
G CPY+++R+ I+ Y+YL+DP ++ ++V++FDEAHN++++C D+
Sbjct: 202 KGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLNGIPWDNAVLIFDEAHNLESICADA 261
Query: 127 LS 128
S
Sbjct: 262 AS 263
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 662 GKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRE 721
G+ + CH L + + N V +F + +G E + I L +GR
Sbjct: 153 GRAQNNACHFLCK-----KRRCPHNNHVAEFIKNKPELGNEP------FDIEDLINIGRH 201
Query: 722 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 781
G CPY+++R+ I+ Y+YL+DP ++ ++V++FDEAHN++++C D+
Sbjct: 202 KGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLNGIPWDNAVLIFDEAHNLESICADA 261
Query: 782 LS 783
S
Sbjct: 262 AS 263
Score = 41.2 bits (95), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQ 631
L S + TR+ I + G +V+ A +VPDG++ FF SY ++ V W ++
Sbjct: 504 LNSSYRTRNTIQYKQELGTAIVNFARIVPDGLLVFFPSYSMMDMCVDFWKNR 555
>gi|296201899|ref|XP_002806878.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Callithrix jacchus]
Length = 1252
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 29 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G+N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLRACPYYTARELIQDAD 363
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 136
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +R R +
Sbjct: 364 IIFCPYNYLLDAQIRETMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422
Query: 137 EKAVGN 142
+ V N
Sbjct: 423 DSMVNN 428
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 684 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G+N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLRACPYYTARELIQDAD 363
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 791
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +R R +
Sbjct: 364 IIFCPYNYLLDAQIRETMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422
Query: 792 EKAVGN 797
+ V N
Sbjct: 423 DSMVNN 428
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY---MN 484
I + + FPY+ YP Q A M + + L++K HCLLE P+G+GK+ +LL +A+ ++
Sbjct: 10 ISGVKINFPYK-AYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQSLS 68
Query: 485 AHPLD 489
P D
Sbjct: 69 GKPAD 73
>gi|348506178|ref|XP_003440637.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Oreochromis niloticus]
Length = 897
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 570 VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWY 629
V+C S LE F+ RD ++ G++L +I VVP GVVCFF SY Y +++ W
Sbjct: 653 VLCSGPSGQELEFTFQNRDTPRMMDETGRILSNICNVVPGGVVCFFPSYDYSRRIISHWE 712
Query: 630 DQGIIDNLQKRKLLFIETQDA 650
G + L +K +F E + A
Sbjct: 713 TSGTLTRLANKKKIFQEPKKA 733
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 10 VDGRCHSLTSSSVRDRH---------KAGENIPVCDFYEKFDAVGREAPLAPG-VYSITK 59
++ RC + + +RH K G VC Y K A+ + + G V+ I +
Sbjct: 262 INDRCMEMQKNKHGERHFVEELGVKRKRGPAKSVCP-YNKASALQQMRDVVLGAVHDIEQ 320
Query: 60 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
L ++GRE CPY+ R AI A++VV Y +L +L + V++ DEAHN+
Sbjct: 321 LLKLGRETHSCPYYATRLAIPPAQLVVLPYQMVLHEATRRAAGVQL-KGQVLIIDEAHNL 379
Query: 120 DNV--CVDS 126
+ C+ S
Sbjct: 380 SDTLSCIHS 388
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 665 VDGRCHSLTSSSVRDRH---------KAGENIPVCDFYEKFDAVGREAPLAPG-VYSITK 714
++ RC + + +RH K G VC Y K A+ + + G V+ I +
Sbjct: 262 INDRCMEMQKNKHGERHFVEELGVKRKRGPAKSVCP-YNKASALQQMRDVVLGAVHDIEQ 320
Query: 715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
L ++GRE CPY+ R AI A++VV Y +L +L + V++ DEAHN+
Sbjct: 321 LLKLGRETHSCPYYATRLAIPPAQLVVLPYQMVLHEATRRAAGVQL-KGQVLIIDEAHNL 379
Query: 775 DNV--CVDS 781
+ C+ S
Sbjct: 380 SDTLSCIHS 388
>gi|222618779|gb|EEE54911.1| hypothetical protein OsJ_02439 [Oryza sativa Japonica Group]
Length = 1025
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSK R G+ + CH L H + V +F +G EA I L
Sbjct: 165 VSKLR-GRQQNNACHYLCKKRWCRHHNS-----VAEFMRNNSELGSEA------CDIEDL 212
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+GR G CPY+++R+ I+ Y+YL+DP ++ ++V++FDEAHN++
Sbjct: 213 VNIGRTKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLNGIPWDNAVLIFDEAHNLE 272
Query: 121 NVCVDSLS 128
++C D+ S
Sbjct: 273 SICADAAS 280
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSK R G+ + CH L H + V +F +G EA I L
Sbjct: 165 VSKLR-GRQQNNACHYLCKKRWCRHHNS-----VAEFMRNNSELGSEA------CDIEDL 212
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
+GR G CPY+++R+ I+ Y+YL+DP ++ ++V++FDEAHN++
Sbjct: 213 VNIGRTKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLNGIPWDNAVLIFDEAHNLE 272
Query: 776 NVCVDSLS 783
++C D+ S
Sbjct: 273 SICADAAS 280
Score = 42.7 bits (99), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 569 GVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW 628
GVV S L S + TR+ + + G +V+ A +VPDG++ FF SY ++ + W
Sbjct: 511 GVVPVGPSGHPLNSSYRTRETLKYKQELGITIVNFARIVPDGLLVFFPSYSMMDKCINCW 570
Query: 629 YDQ 631
D+
Sbjct: 571 KDR 573
>gi|387594391|gb|EIJ89415.1| hypothetical protein NEQG_00185 [Nematocida parisii ERTm3]
gi|387596770|gb|EIJ94391.1| hypothetical protein NEPG_01059 [Nematocida parisii ERTm1]
Length = 689
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 20 SSVRDRHKAGENIPVCDFYEKFDAVGREAPLA---PGVYSITKLKEMGRELGLCPYFLAR 76
S+ ++++K + C +Y D R + + P V+SI L + G E CPY+ +
Sbjct: 120 SACKNKNKDINSKNKCKYYS-IDKESRTSSMENSLPTVFSIEDLIQSGSECSTCPYYYTK 178
Query: 77 QAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINR 133
+ IV Y+Y+++ I + +L S+++ DEAHN+D++C S SV I R
Sbjct: 179 DMQDKSTIVFAPYNYIINKSIVKAMGIDL-NGSIIIVDEAHNLDDICRSSGSVDIER 234
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 675 SSVRDRHKAGENIPVCDFYEKFDAVGREAPLA---PGVYSITKLKEMGRELGLCPYFLAR 731
S+ ++++K + C +Y D R + + P V+SI L + G E CPY+ +
Sbjct: 120 SACKNKNKDINSKNKCKYYS-IDKESRTSSMENSLPTVFSIEDLIQSGSECSTCPYYYTK 178
Query: 732 QAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINR 788
+ IV Y+Y+++ I + +L S+++ DEAHN+D++C S SV I R
Sbjct: 179 DMQDKSTIVFAPYNYIINKSIVKAMGIDL-NGSIIIVDEAHNLDDICRSSGSVDIER 234
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 53/89 (59%), Gaps = 10/89 (11%)
Query: 462 LLEMPSGTGKTTSLLSLIVAYMNAHPLDV-TKLLYCSRTVPEIEKVVEELARLFDYYIKH 520
++E P+GTGKT S+L +VA++N + + K+ +RT+ + ++++E I+H
Sbjct: 39 MIESPTGTGKTLSILESVVAWINKNKQNKEVKVYVTTRTIKQAQQLIEYFKT-----IRH 93
Query: 521 NEEINMTGLVLSSRKNLCIHSEFETRDDI 549
++++ L+SR +LC++ E T ++
Sbjct: 94 APKMSL----LASRAHLCLNPEVRTAGNL 118
>gi|71413162|ref|XP_808733.1| helicase-like protein [Trypanosoma cruzi strain CL Brener]
gi|70872997|gb|EAN86882.1| helicase-like protein, putative [Trypanosoma cruzi]
Length = 956
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 35 CDFYEKFDAVGREA---PLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
C+ + +G A PL G V+ + L G CPY+ R+ + A +
Sbjct: 241 CEAVCNYGVLGSRAISHPLHQGRLEKVWDMEDLVAEGVATQSCPYYATRELVFFAHVNFA 300
Query: 88 SYHYLLDPKIANVVSKE--LARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 145
+Y YLLDP I + E L S+++FDEAHN+ +VC D+LS+ + V I+
Sbjct: 301 TYQYLLDPLIRHECKMEAALKNHSIIIFDEAHNVPSVCQDALSLETTLDNLRLVVSEIEP 360
Query: 146 L 146
L
Sbjct: 361 L 361
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 690 CDFYEKFDAVGREA---PLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
C+ + +G A PL G V+ + L G CPY+ R+ + A +
Sbjct: 241 CEAVCNYGVLGSRAISHPLHQGRLEKVWDMEDLVAEGVATQSCPYYATRELVFFAHVNFA 300
Query: 743 SYHYLLDPKIANVVSKE--LARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 800
+Y YLLDP I + E L S+++FDEAHN+ +VC D+LS+ + V I+
Sbjct: 301 TYQYLLDPLIRHECKMEAALKNHSIIIFDEAHNVPSVCQDALSLETTLDNLRLVVSEIEP 360
Query: 801 L 801
L
Sbjct: 361 L 361
>gi|402899850|ref|XP_003912899.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Papio anubis]
Length = 1248
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 29 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 304 GRNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDAD 363
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S I
Sbjct: 364 IIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSI 410
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 684 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 304 GRNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDAD 363
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S I
Sbjct: 364 IIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSI 410
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
I + ++FPY+ YP Q A M + + L++K HCLLE P+G+GK+ +LL +A+ +
Sbjct: 10 IGGVKIYFPYK-AYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQS 66
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKL 642
FE +D++ G LL+ + V G++CF SY LE + W G+ NL+ K
Sbjct: 669 TFEFQDEV------GALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKT 722
Query: 643 LFIETQDA 650
+ +E Q
Sbjct: 723 VIVEPQGG 730
>gi|367047199|ref|XP_003653979.1| hypothetical protein THITE_2116525 [Thielavia terrestris NRRL 8126]
gi|347001242|gb|AEO67643.1| hypothetical protein THITE_2116525 [Thielavia terrestris NRRL 8126]
Length = 490
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 45/90 (50%), Gaps = 19/90 (21%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWY------DQG- 632
E F+ R D ++IR G L++I VVPDGVV FF SY YL+ VVASW QG
Sbjct: 191 FEFSFQKRSDRAMIRQLGLALLNICSVVPDGVVVFFPSYGYLDEVVASWQTPDNPASQGA 250
Query: 633 ------------IIDNLQKRKLLFIETQDA 650
I D L +K LF ET+
Sbjct: 251 PGTAGPATAAPTIWDRLAAKKALFRETKGG 280
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
Query: 487 PLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETR 546
P D L C +P + LF + + + I SS + F+ R
Sbjct: 151 PPDKITTLSCGHVIPS--------SNLFVWTLASTKPIPPG----SSTASDSFEFSFQKR 198
Query: 547 DDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV---FETRDD 589
D ++IR G L++I VVPDGVV FF SY YL+ V ++T D+
Sbjct: 199 SDRAMIRQLGLALLNICSVVPDGVVVFFPSYGYLDEVVASWQTPDN 244
>gi|345563336|gb|EGX46339.1| hypothetical protein AOL_s00110g163 [Arthrobotrys oligospora ATCC
24927]
Length = 920
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 11/95 (11%)
Query: 562 IACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYL 621
+A VP GV + E FE R+ +I G+ + ++ V+P GVV FF SY YL
Sbjct: 652 LAMTVPMGV-----TNQAFEFTFEKRNGPKLITELGKTIFNLCKVIPHGVVVFFPSYAYL 706
Query: 622 ESVVASWYDQG------IIDNLQKRKLLFIETQDA 650
E+VV W ++G I +NLQ RK +F E + +
Sbjct: 707 ETVVKVWEEKGPEGTASIYENLQSRKAVFREAKGS 741
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 20/169 (11%)
Query: 636 NLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGEN-----IPVC 690
+L RKLL I D +++ S S V+ RC L S K+ EN +P
Sbjct: 271 SLGSRKLLCI--NDKVNTPSAS----ANTVNDRCLDLQQS------KSAENKCPFLLPKA 318
Query: 691 DFYEK-FDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
D + R+ LA + I L+ +G +L +C Y+ +R+AI +I+ Y LL
Sbjct: 319 DNQRNVLNREFRDLALAD-IKDIEDLRGVGEKLKICGYYASREAIKPTEIITLPYPLLLQ 377
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
K + K ++ +++ DEAHN+ + + SV I+ + K N+
Sbjct: 378 -KSSREALKISVKNHIIIIDEAHNLMDAVSNIHSVSISLSQLTKCADNL 425
Score = 42.7 bits (99), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
+ I L+ +G +L +C Y+ +R+AI +I+ Y LL K + K ++ +++
Sbjct: 337 IKDIEDLRGVGEKLKICGYYASREAIKPTEIITLPYPLLLQ-KSSREALKISVKNHIIII 395
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
DEAHN+ + + SV I+ + K N+
Sbjct: 396 DEAHNLMDAVSNIHSVSISLSQLTKCADNL 425
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 536 NLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
N FE R+ +I G+ + ++ V+P GVV FF SY YLE+V
Sbjct: 662 NQAFEFTFEKRNGPKLITELGKTIFNLCKVIPHGVVVFFPSYAYLETV 709
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 802 EGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQGKTDYGIMIF 861
E + E D+ KL++E +G + R + + + + + DY +++
Sbjct: 816 ESAVAEGTSLDATKLQQEAKAAAQGYYENACMRAVNQSIGRAI------RHRNDYAVILL 869
Query: 862 ADKRFARSDKRSKLPKWIQE 881
DKRF+R + KLPKWI++
Sbjct: 870 LDKRFSRDNIWGKLPKWIRD 889
>gi|340374870|ref|XP_003385960.1| PREDICTED: regulator of telomere elongation helicase 1-like
[Amphimedon queenslandica]
Length = 717
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 20/197 (10%)
Query: 641 KLLFIETQDAL--DSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDA 698
K+ I ++D L +S +SK+ + + V CH+ ++ C +Y D
Sbjct: 118 KVSIIGSRDQLCINSEVMSKDSNAEKVHA-CHAKVAAKS------------CTYYNNVDL 164
Query: 699 VGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSK 758
P + I +L MG + +CPY+LAR+ A ++ Y+Y+LD + V
Sbjct: 165 KRLSVPEG-FIPDIEELVGMGTKNKMCPYYLAREMKTEADLIFMPYNYILDLRTRLVHGI 223
Query: 759 ELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLRE 818
+ ++VV+ DEAHNI+ VC DS S + I + +I L LK E L E
Sbjct: 224 NIT-NTVVILDEAHNIERVCEDSSSFELTSTDIAHCIKDIDYL---LKNKYEEAKEYLSE 279
Query: 819 EYARLVEGLRDAQSARE 835
+ L+D + +E
Sbjct: 280 LDTQTQNTLKDLANLKE 296
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 9/172 (5%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C +Y D P + I +L MG + +CPY+LAR+ A ++ Y+Y+LD
Sbjct: 156 CTYYNNVDLKRLSVPEG-FIPDIEELVGMGTKNKMCPYYLAREMKTEADLIFMPYNYILD 214
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK 154
+ V + ++VV+ DEAHNI+ VC DS S + I + +I L LK
Sbjct: 215 LRTRLVHGINIT-NTVVILDEAHNIERVCEDSSSFELTSTDIAHCIKDIDYL---LKNKY 270
Query: 155 EADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQE----VVPGN 202
E L E + L+D + +E + L + + E+ E V PG+
Sbjct: 271 EEAKEYLSELDTQTQNTLKDLANLKELFLCLEDSLDKIELKSENNECVKPGS 322
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 27/138 (19%)
Query: 427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAH 486
+I+++PV FP+ YP Q YM ++ KAL + +LE P+GTGKT SLL +++
Sbjct: 11 VIENVPVSFPFT-PYPCQIEYMEKVIKALQNNTNAILESPTGTGKTLSLLCATLSWRQQL 69
Query: 487 PLDVT-----------------KLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGL 529
P V K++Y SRT ++ + + EL + ++++ G
Sbjct: 70 PAPVISEWDLQSDSKGPLGGRPKIIYASRTHSQLSQAIHELKS-----TSYRPKVSIIG- 123
Query: 530 VLSSRKNLCIHSEFETRD 547
SR LCI+SE ++D
Sbjct: 124 ---SRDQLCINSEVMSKD 138
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PD V +L S ++TR + + + G LV+ ++PDGV+ FF
Sbjct: 482 QVWVGVVSKGPDNV--------HLNSSYQTRFTPAYMDSLGNTLVNFFRIIPDGVLVFFP 533
Query: 617 SYLYLESVVASWYDQ-GIIDNLQKRKLLFIE 646
SY+ +E++V W + I +++ K +F E
Sbjct: 534 SYVVMETLVTHWKEHSNIFMRMEQHKQIFKE 564
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN----MTGLVLSSRKNLCIHSEFET 545
V ++ S T+ +E EL F ++ + I G+V N+ ++S ++T
Sbjct: 444 VRSVILTSGTLSPLESFTSELQLEFPVSLQGSHVIGKDQVWVGVVSKGPDNVHLNSSYQT 503
Query: 546 RDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
R + + + G LV+ ++PDGV+ FF SY+ +E++
Sbjct: 504 RFTPAYMDSLGNTLVNFFRIIPDGVLVFFPSYVVMETL 541
>gi|301097939|ref|XP_002898063.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262105424|gb|EEY63476.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 622
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 8/135 (5%)
Query: 9 IVDGRCHSLTSSSVRDRHKAG--ENIPVCDFYE-KFDAVGREAPLAPGVYSITKLKEMGR 65
+V+ +C L R R AG E C + + F + ++P + ITKL
Sbjct: 195 LVNEKCQELRMEKER-RRMAGDEEGEGGCKYNQTSFSELRAQSPQVWDIEDITKLASTCE 253
Query: 66 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVD 125
E C YF ++ + A IV Y+Y+LDP I V L +S+VV DEAHN+++ C
Sbjct: 254 E---CAYFFSKSKLETAHIVFCPYNYILDPAIRKAVGITL-HNSIVVLDEAHNVEDTCRS 309
Query: 126 SLSVRINRRTIEKAV 140
S+ I + +A+
Sbjct: 310 GASLEITDNMLGRAI 324
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 8/135 (5%)
Query: 664 IVDGRCHSLTSSSVRDRHKAG--ENIPVCDFYE-KFDAVGREAPLAPGVYSITKLKEMGR 720
+V+ +C L R R AG E C + + F + ++P + ITKL
Sbjct: 195 LVNEKCQELRMEKER-RRMAGDEEGEGGCKYNQTSFSELRAQSPQVWDIEDITKLASTCE 253
Query: 721 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVD 780
E C YF ++ + A IV Y+Y+LDP I V L +S+VV DEAHN+++ C
Sbjct: 254 E---CAYFFSKSKLETAHIVFCPYNYILDPAIRKAVGITL-HNSIVVLDEAHNVEDTCRS 309
Query: 781 SLSVRINRRTIEKAV 795
S+ I + +A+
Sbjct: 310 GASLEITDNMLGRAI 324
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S ++ + + + G LL+ A ++P G++ FF SY L + A W GI L K
Sbjct: 501 LLSTYKNQQNFQYQDSMGYLLLQYAQMIPGGILMFFPSYALLGILKARWERTGIWAKLVK 560
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP 688
K +F E + + GK D +S RH A ++ P
Sbjct: 561 HKKMFSEPR-----------QGGKFFDELLDKYKNSIA--RHAASQDAP 596
>gi|257386888|ref|YP_003176661.1| DEAD/DEAH box helicase [Halomicrobium mukohataei DSM 12286]
gi|257169195|gb|ACV46954.1| DEAD_2 domain protein [Halomicrobium mukohataei DSM 12286]
Length = 739
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 31 NIPVCDFYEK---FDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
+ +CD Y + D A L V + + E + GLC Y L ++ + +VV
Sbjct: 182 DATICDHYYRNLTVDTTEFYAWLYEDVRTPDDVYEYAHDRGLCGYELLKEGVEGVDLVVC 241
Query: 88 SYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 144
+YH+LLDP I + L R V VFDEAHN++N D + T+E A+ +
Sbjct: 242 NYHHLLDPMIREQFFRWLGRDPEDVVAVFDEAHNVENAARDHARRTLTETTVESAIDELA 301
Query: 145 TLEGT 149
E T
Sbjct: 302 ESEET 306
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 686 NIPVCDFYEK---FDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
+ +CD Y + D A L V + + E + GLC Y L ++ + +VV
Sbjct: 182 DATICDHYYRNLTVDTTEFYAWLYEDVRTPDDVYEYAHDRGLCGYELLKEGVEGVDLVVC 241
Query: 743 SYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 799
+YH+LLDP I + L R V VFDEAHN++N D + T+E A+ +
Sbjct: 242 NYHHLLDPMIREQFFRWLGRDPEDVVAVFDEAHNVENAARDHARRTLTETTVESAIDELA 301
Query: 800 TLEGT 804
E T
Sbjct: 302 ESEET 306
>gi|218188567|gb|EEC70994.1| hypothetical protein OsI_02661 [Oryza sativa Indica Group]
Length = 984
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSK R G+ + CH L H + V +F +G EA I L
Sbjct: 124 VSKLR-GRQQNNACHYLCKKRWCRHHNS-----VAEFMRNNSELGSEA------CDIEDL 171
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+GR G CPY+++R+ I+ Y+YL+DP ++ ++V++FDEAHN++
Sbjct: 172 VNIGRTKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLNGIPWDNAVLIFDEAHNLE 231
Query: 121 NVCVDSLS 128
++C D+ S
Sbjct: 232 SICADAAS 239
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSK R G+ + CH L H + V +F +G EA I L
Sbjct: 124 VSKLR-GRQQNNACHYLCKKRWCRHHNS-----VAEFMRNNSELGSEA------CDIEDL 171
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
+GR G CPY+++R+ I+ Y+YL+DP ++ ++V++FDEAHN++
Sbjct: 172 VNIGRTKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLNGIPWDNAVLIFDEAHNLE 231
Query: 776 NVCVDSLS 783
++C D+ S
Sbjct: 232 SICADAAS 239
Score = 42.7 bits (99), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 569 GVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW 628
GVV S L S + TR+ + + G +V+ A +VPDG++ FF SY ++ + W
Sbjct: 470 GVVPVGPSGHPLNSSYRTRETLKYKQELGITIVNFARIVPDGLLVFFPSYSMMDKCINCW 529
Query: 629 YDQ 631
D+
Sbjct: 530 KDR 532
>gi|167526369|ref|XP_001747518.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773964|gb|EDQ87598.1| predicted protein [Monosiga brevicollis MX1]
Length = 1029
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 16/215 (7%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDR-HKAGENIPVCDFYEKFDAVGRE--APLAPGVYS 711
+V RD V +++S++ + R K N C FY+ D V R+ A LA +
Sbjct: 70 AVLGSRDQLCVHPEVKTISSNAAKTRVCKIRVNAHDCSFYQNVDPVFRDVDADLATNPHP 129
Query: 712 ITKLK---EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
L+ ++G CPYFL+R A +++ Y+YL+D + +L +VV+F
Sbjct: 130 ALDLEDLVQLGERRHACPYFLSRSMQSGADVILLPYNYLIDKQTRASQGIDL-NGAVVIF 188
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 828
DEAHNI++ C ++ S + T G + ++ L+ + +AD +L E+ L++
Sbjct: 189 DEAHNIESSCEEAASFDL---TSADLAGFLTEIDQLLR-VADADRPELSEDRLLLLK--- 241
Query: 829 DAQSARETDVVLANPVLPDEILQGKTDYGIMIFAD 863
++ + + L L + + K DY FA+
Sbjct: 242 --KAVLDLEAALDRIELKNGGFKAKGDYMYQFFAE 274
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 5 RDGKIVDGRCHSLTSSSVRDR-HKAGENIPVCDFYEKFDAVGRE--APLAPGVYSITKLK 61
RD V +++S++ + R K N C FY+ D V R+ A LA + L+
Sbjct: 75 RDQLCVHPEVKTISSNAAKTRVCKIRVNAHDCSFYQNVDPVFRDVDADLATNPHPALDLE 134
Query: 62 ---EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
++G CPYFL+R A +++ Y+YL+D + +L +VV+FDEAHN
Sbjct: 135 DLVQLGERRHACPYFLSRSMQSGADVILLPYNYLIDKQTRASQGIDL-NGAVVIFDEAHN 193
Query: 119 IDNVCVDSLS 128
I++ C ++ S
Sbjct: 194 IESSCEEAAS 203
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
+++ + DYG +I AD RFA +R+ LPKW+Q+++
Sbjct: 616 VIRHRQDYGAIILADSRFADERQRACLPKWLQKHV 650
>gi|57012613|sp|Q9BX63.1|FANCJ_HUMAN RecName: Full=Fanconi anemia group J protein; Short=Protein FACJ;
AltName: Full=ATP-dependent RNA helicase BRIP1; AltName:
Full=BRCA1-associated C-terminal helicase 1; AltName:
Full=BRCA1-interacting protein C-terminal helicase 1;
Short=BRCA1-interacting protein 1
gi|13661819|gb|AAK38111.1|AF360549_1 BRCA1-binding helicase-like protein BACH1 [Homo sapiens]
gi|75516497|gb|AAI01473.1| BRCA1 interacting protein C-terminal helicase 1 [Homo sapiens]
gi|75516501|gb|AAI01475.1| BRCA1 interacting protein C-terminal helicase 1 [Homo sapiens]
gi|313883612|gb|ADR83292.1| BRCA1 interacting protein C-terminal helicase 1 [synthetic
construct]
Length = 1249
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 29 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G+N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDAD 363
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 136
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +R R +
Sbjct: 364 IIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422
Query: 137 EKAVGN 142
+ V N
Sbjct: 423 DSMVNN 428
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 684 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G+N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDAD 363
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 791
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +R R +
Sbjct: 364 IIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422
Query: 792 EKAVGN 797
+ V N
Sbjct: 423 DSMVNN 428
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY---MN 484
I + ++FPY+ YP Q A M + + L++K HCLLE P+G+GK+ +LL +A+ ++
Sbjct: 10 IGGVKIYFPYK-AYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQSLS 68
Query: 485 AHPLD 489
P D
Sbjct: 69 GKPAD 73
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKL 642
FE +D++ G LL+ + V G++CF SY LE + W G+ NL+ K
Sbjct: 669 TFEFQDEV------GALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKT 722
Query: 643 LFIETQDA 650
+ +E Q
Sbjct: 723 VIVEPQGG 730
>gi|301897118|ref|NP_114432.2| Fanconi anemia group J protein [Homo sapiens]
gi|119571815|gb|EAW51430.1| BRCA1 interacting protein C-terminal helicase 1, isoform CRA_a
[Homo sapiens]
gi|119571816|gb|EAW51431.1| BRCA1 interacting protein C-terminal helicase 1, isoform CRA_a
[Homo sapiens]
gi|119571817|gb|EAW51432.1| BRCA1 interacting protein C-terminal helicase 1, isoform CRA_a
[Homo sapiens]
gi|119571818|gb|EAW51433.1| BRCA1 interacting protein C-terminal helicase 1, isoform CRA_a
[Homo sapiens]
Length = 1249
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 29 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G+N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDAD 363
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 136
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +R R +
Sbjct: 364 IIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422
Query: 137 EKAVGN 142
+ V N
Sbjct: 423 DSMVNN 428
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 684 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G+N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDAD 363
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 791
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +R R +
Sbjct: 364 IIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422
Query: 792 EKAVGN 797
+ V N
Sbjct: 423 DSMVNN 428
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY---MN 484
I + ++FPY+ YP Q A M + + L++K HCLLE P+G+GK+ +LL +A+ ++
Sbjct: 10 IGGVKIYFPYK-AYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQSLS 68
Query: 485 AHPLD 489
P D
Sbjct: 69 GKPAD 73
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKL 642
FE +D++ G LL+ + V G++CF SY LE + W G+ NL+ K
Sbjct: 669 TFEFQDEV------GALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKT 722
Query: 643 LFIETQDA 650
+ +E Q
Sbjct: 723 VIVEPQGG 730
>gi|449491848|ref|XP_004159020.1| PREDICTED: probable ATP-dependent RNA helicase DDX11-like [Cucumis
sativus]
Length = 1168
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
+ R ++++ G LL +I VVP+G+V FF+S+ Y E V W GI+D + K+K +
Sbjct: 634 YNRRSSSAIVKELGLLLCNIVTVVPEGIVVFFSSFDYEEQVYGLWKTSGILDRIMKKKRI 693
Query: 644 FIETQDALDSRSVSKE 659
F E + D SV KE
Sbjct: 694 FREPRKNTDVESVLKE 709
Score = 44.3 bits (103), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I L +GR++G CPY+ +R + A ++V Y LL + L ++S+V+ DEA
Sbjct: 311 IEDLIHLGRKVGTCPYYGSRSLVQGADLIVLPYQSLLSKSSRESLGLVL-KNSIVIIDEA 369
Query: 117 HNIDNVCVDSLSVRINRRTIE 137
HN+ + + +++ +E
Sbjct: 370 HNLADSLISMHDSKVSYSQLE 390
Score = 44.3 bits (103), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I L +GR++G CPY+ +R + A ++V Y LL + L ++S+V+ DEA
Sbjct: 311 IEDLIHLGRKVGTCPYYGSRSLVQGADLIVLPYQSLLSKSSRESLGLVL-KNSIVIIDEA 369
Query: 772 HNIDNVCVDSLSVRINRRTIE 792
HN+ + + +++ +E
Sbjct: 370 HNLADSLISMHDSKVSYSQLE 390
>gi|395845987|ref|XP_003795698.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Otolemur garnettii]
Length = 1234
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 29 GENIPVCDFYEKFDAVGREAPLA-----PGVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G+N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 303 GKNGKSCYFYHGVHKISDQHTLQTLQGMSKAWDIEELVSLGKKLKACPYYTARELIGDAD 362
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +
Sbjct: 363 IIFCPYNYLLDSQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSV 409
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 684 GENIPVCDFYEKFDAVGREAPLA-----PGVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G+N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 303 GKNGKSCYFYHGVHKISDQHTLQTLQGMSKAWDIEELVSLGKKLKACPYYTARELIGDAD 362
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +
Sbjct: 363 IIFCPYNYLLDSQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSV 409
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
I + + FPY+ YP Q A M + + L++K HCLLE P+G+GK+ +LL +A+ +
Sbjct: 10 IGGVKINFPYK-AYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCSALAWQQS 66
Score = 43.5 bits (101), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 23/140 (16%)
Query: 551 VIRNYGQLLVDIACVVPDG-VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPD 609
VI+N Q+ V P G +C ++ + E+ FE +D++ G LL+ + V
Sbjct: 640 VIKN-SQVWVGTIGSGPKGRNLC--ATFQHTET-FEFQDEV------GALLLSVCQTVSQ 689
Query: 610 GVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA------------LDSRSVS 657
G++CF SY LE + W G+ NL+ K + +E Q D+
Sbjct: 690 GILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDELLQLYYDAIKFK 749
Query: 658 KERDGKIVDGRCHSLTSSSV 677
E+DG ++ C S +
Sbjct: 750 GEKDGALLVAVCRGKVSEGL 769
>gi|332258882|ref|XP_003278520.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Nomascus leucogenys]
Length = 1248
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 29 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G+N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDAD 363
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 136
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +R R +
Sbjct: 364 IIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422
Query: 137 EKAVGN 142
+ V N
Sbjct: 423 DSMVNN 428
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 684 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G+N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDAD 363
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 791
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +R R +
Sbjct: 364 IIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422
Query: 792 EKAVGN 797
+ V N
Sbjct: 423 DSMVNN 428
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
I + ++FPY+ YP Q A M + + L++K HCLLE P+G+GK+ +LL +A+ +
Sbjct: 10 IGGVKIYFPYK-AYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQS 66
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 18/107 (16%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKL 642
FE +D++ G LL+ + V G++CF SY LE + W+ G+ NL+ K
Sbjct: 669 TFEFQDEV------GALLLSVCQTVSQGILCFLPSYKLLEKLKERWFSTGLWHNLELVKT 722
Query: 643 LFIETQDA------------LDSRSVSKERDGKIVDGRCHSLTSSSV 677
+ +E Q D+ E+DG ++ C S +
Sbjct: 723 VIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGL 769
>gi|66807703|ref|XP_637574.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
gi|60465999|gb|EAL64066.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
Length = 1078
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V+ I L E G+ CPYF +R I A ++ Y+YL+DP+I + ++A S+V+F
Sbjct: 514 VWDIEDLMEAGQAHSECPYFASRDMIEKADLIFCPYNYLIDPQIRKSFADKVA-GSIVIF 572
Query: 114 DEAHNIDNVCVDSLS 128
DEAHNI++ +++ S
Sbjct: 573 DEAHNIEDALMETSS 587
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V+ I L E G+ CPYF +R I A ++ Y+YL+DP+I + ++A S+V+F
Sbjct: 514 VWDIEDLMEAGQAHSECPYFASRDMIEKADLIFCPYNYLIDPQIRKSFADKVA-GSIVIF 572
Query: 769 DEAHNIDNVCVDSLS 783
DEAHNI++ +++ S
Sbjct: 573 DEAHNIEDALMETSS 587
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 597 GQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
G+ ++ ++P GV+CFF SY +LE +++ W + GI+ + +K F E ++
Sbjct: 872 GETILQHIELIPSGVLCFFPSYGFLEKLLSRWDETGILKKINAKKRYFYEPKN 924
Score = 43.1 bits (100), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
I + V FP++ Y Q + M + + LD+K +C+LE P+GTGKT SLL +A+
Sbjct: 193 IGNYKVKFPFK-PYACQASMMSRILEGLDSKENCILESPTGTGKTLSLLCSSLAW 246
>gi|297597115|ref|NP_001043456.2| Os01g0592900 [Oryza sativa Japonica Group]
gi|53791584|dbj|BAD52706.1| DEAH helicase isoform 5-like [Oryza sativa Japonica Group]
gi|255673416|dbj|BAF05370.2| Os01g0592900 [Oryza sativa Japonica Group]
Length = 876
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSK R G+ + CH L H + V +F +G EA I L
Sbjct: 16 VSKLR-GRQQNNACHYLCKKRWCRHHNS-----VAEFMRNNSELGSEA------CDIEDL 63
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+GR G CPY+++R+ I+ Y+YL+DP ++ ++V++FDEAHN++
Sbjct: 64 VNIGRTKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLNGIPWDNAVLIFDEAHNLE 123
Query: 121 NVCVDSLS 128
++C D+ S
Sbjct: 124 SICADAAS 131
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSK R G+ + CH L H + V +F +G EA I L
Sbjct: 16 VSKLR-GRQQNNACHYLCKKRWCRHHNS-----VAEFMRNNSELGSEA------CDIEDL 63
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
+GR G CPY+++R+ I+ Y+YL+DP ++ ++V++FDEAHN++
Sbjct: 64 VNIGRTKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLNGIPWDNAVLIFDEAHNLE 123
Query: 776 NVCVDSLS 783
++C D+ S
Sbjct: 124 SICADAAS 131
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 569 GVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW 628
GVV S L S + TR+ + + G +V+ A +VPDG++ FF SY ++ + W
Sbjct: 362 GVVPVGPSGHPLNSSYRTRETLKYKQELGITIVNFARIVPDGLLVFFPSYSMMDKCINCW 421
Query: 629 YDQ 631
D+
Sbjct: 422 KDR 424
>gi|414881659|tpg|DAA58790.1| TPA: regulator of telomere elongation helicase 1 [Zea mays]
Length = 619
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 7 GKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRE 66
G+ + CH L + + N V +F + +G E + I L +GR
Sbjct: 153 GRAQNNACHFLCK-----KRRCPHNNHVAEFIKNKPELGNEP------FDIEDLINIGRH 201
Query: 67 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 126
G CPY+++R+ I+ Y+YL+DP ++ ++V++FDEAHN++++C D+
Sbjct: 202 KGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLNGIPWDNAVLIFDEAHNLESICADA 261
Query: 127 LS 128
S
Sbjct: 262 AS 263
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 662 GKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRE 721
G+ + CH L + + N V +F + +G E + I L +GR
Sbjct: 153 GRAQNNACHFLCK-----KRRCPHNNHVAEFIKNKPELGNEP------FDIEDLINIGRH 201
Query: 722 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 781
G CPY+++R+ I+ Y+YL+DP ++ ++V++FDEAHN++++C D+
Sbjct: 202 KGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLNGIPWDNAVLIFDEAHNLESICADA 261
Query: 782 LS 783
S
Sbjct: 262 AS 263
Score = 40.4 bits (93), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQ 631
L S + TR+ I + G +V+ A +VPDG++ FF SY ++ V W ++
Sbjct: 504 LNSSYRTRNTIQYKQELGTAIVNFARIVPDGLLVFFPSYSMMDMCVDFWKNR 555
>gi|226494081|ref|NP_001152397.1| regulator of telomere elongation helicase 1 [Zea mays]
gi|195655863|gb|ACG47399.1| regulator of telomere elongation helicase 1 [Zea mays]
Length = 619
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 7 GKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRE 66
G+ + CH L + + N V +F + +G E + I L +GR
Sbjct: 153 GRAQNNACHFLCK-----KRRCPHNNHVAEFIKNKPELGNEP------FDIEDLINIGRH 201
Query: 67 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 126
G CPY+++R+ I+ Y+YL+DP ++ ++V++FDEAHN++++C D+
Sbjct: 202 KGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLNGIPWDNAVLIFDEAHNLESICADA 261
Query: 127 LS 128
S
Sbjct: 262 AS 263
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 662 GKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRE 721
G+ + CH L + + N V +F + +G E + I L +GR
Sbjct: 153 GRAQNNACHFLCK-----KRRCPHNNHVAEFIKNKPELGNEP------FDIEDLINIGRH 201
Query: 722 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 781
G CPY+++R+ I+ Y+YL+DP ++ ++V++FDEAHN++++C D+
Sbjct: 202 KGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLNGIPWDNAVLIFDEAHNLESICADA 261
Query: 782 LS 783
S
Sbjct: 262 AS 263
Score = 40.4 bits (93), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQ 631
L S + TR+ I + G +V+ A +VPDG++ FF SY ++ V W ++
Sbjct: 504 LNSSYRTRNTIQYKQELGTAIVNFARIVPDGLLVFFPSYSMMDMCVDFWKNR 555
>gi|258566511|ref|XP_002584000.1| hypothetical protein UREG_06967 [Uncinocarpus reesii 1704]
gi|237907701|gb|EEP82102.1| hypothetical protein UREG_06967 [Uncinocarpus reesii 1704]
Length = 593
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 5/176 (2%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V I + ++G +G+CPY+ R I H++IV Y LL + L + V++
Sbjct: 57 VQDIEDIGKIGERMGICPYYATRSVIGHSEIVTLPYPLLLQKSAREALDISL-KDHVIII 115
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEG-L 827
DEAHN+ +V + SV I+ + ++ A+ + K + + + RL+ L
Sbjct: 116 DEAHNLMDVIANIHSVTISLKQLQTALEQVTVYAKKYKTRLKGKNRVYIAQVMRLIASIL 175
Query: 828 RDAQSARETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
+ +S T ++ V P +++ GK GI + +R + SKL + I YL
Sbjct: 176 KYLESNVATKGLMDGTVEPSQLMSGK---GIDQINPHKLSRYLQESKLARKIDGYL 228
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V I + ++G +G+CPY+ R I H++IV Y LL + L + V++
Sbjct: 57 VQDIEDIGKIGERMGICPYYATRSVIGHSEIVTLPYPLLLQKSAREALDISL-KDHVIII 115
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAV 140
DEAHN+ +V + SV I+ + ++ A+
Sbjct: 116 DEAHNLMDVIANIHSVTISLKQLQTAL 142
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW--YDQG-----IID 635
FE R ++ + GQ +V++ V+PDGVV FF SY +L+ V+ +W + G II+
Sbjct: 356 TFEKRKSSDMMLDLGQTIVEMCKVIPDGVVAFFPSYKFLQQVLEAWKYFPSGSTGPKIIE 415
Query: 636 NLQKRKLLFIETQD 649
+ K L E+Q+
Sbjct: 416 TIGLLKPLLYESQE 429
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFET 586
FE R ++ + GQ +V++ V+PDGVV FF SY +L+ V E
Sbjct: 357 FEKRKSSDMMLDLGQTIVEMCKVIPDGVVAFFPSYKFLQQVLEA 400
>gi|229581649|ref|YP_002840048.1| DEAD/DEAH box helicase [Sulfolobus islandicus Y.N.15.51]
gi|228012365|gb|ACP48126.1| DEAD_2 domain protein [Sulfolobus islandicus Y.N.15.51]
Length = 550
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C+ E F+A P V S+ +LKE G++LG CPY+ ++I A +V+ +Y YL
Sbjct: 99 CNGCEIFNASTITITDPPKV-SLNRLKEEGKKLGFCPYYSLLESIKSADVVLLTYPYLFI 157
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI--QTLEGTLKE 152
P + + VVV DEAHNI+N+ + ++N+R +E A+ Q + L+
Sbjct: 158 PWLRESLDINW-EDYVVVIDEAHNIENIS-NIEEKKLNKRIVEMAISQTKSQNVRLILER 215
Query: 153 MKE 155
+KE
Sbjct: 216 LKE 218
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C+ E F+A P V S+ +LKE G++LG CPY+ ++I A +V+ +Y YL
Sbjct: 99 CNGCEIFNASTITITDPPKV-SLNRLKEEGKKLGFCPYYSLLESIKSADVVLLTYPYLFI 157
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI--QTLEGTLKE 807
P + + VVV DEAHNI+N+ + ++N+R +E A+ Q + L+
Sbjct: 158 PWLRESLDINW-EDYVVVIDEAHNIENIS-NIEEKKLNKRIVEMAISQTKSQNVRLILER 215
Query: 808 MKE 810
+KE
Sbjct: 216 LKE 218
>gi|405118752|gb|AFR93526.1| CHL1 helicase [Cryptococcus neoformans var. grubii H99]
Length = 853
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
E F R+D +++ + G +L VVPDGVV F SY +L+ V A W G++ L +
Sbjct: 615 FEFKFGNRNDEALLTDLGAVLQATIGVVPDGVVVFLPSYAFLDKVRALWTKSGLLQRLGE 674
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDR 680
RK LF E Q + D ++ RD + C++ +++ + R
Sbjct: 675 RKQLFYEPQTSGDVETIL--RDYALAISSCYATSTAGQKSR 713
>gi|357130391|ref|XP_003566832.1| PREDICTED: regulator of telomere elongation helicase 1-like
[Brachypodium distachyon]
Length = 872
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 12/128 (9%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
VSK R GK + CH L + R NI V ++ +G E + I L
Sbjct: 16 VSKLR-GKAQNNGCHYL----CKKRLCCHNNI-VTEYMRNNSELGSEP------FDIEDL 63
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+GR G CPY+++R+ I+ Y+YL+DP ++ ++V++FDEAHN++
Sbjct: 64 VNIGRTKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLTGIPWDNAVLIFDEAHNLE 123
Query: 121 NVCVDSLS 128
++C D+ S
Sbjct: 124 SICADAAS 131
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 12/128 (9%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
VSK R GK + CH L + R NI V ++ +G E + I L
Sbjct: 16 VSKLR-GKAQNNGCHYL----CKKRLCCHNNI-VTEYMRNNSELGSEP------FDIEDL 63
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
+GR G CPY+++R+ I+ Y+YL+DP ++ ++V++FDEAHN++
Sbjct: 64 VNIGRTKGPCPYYISRELSKSVDILFAPYNYLIDPGNRRSLTGIPWDNAVLIFDEAHNLE 123
Query: 776 NVCVDSLS 783
++C D+ S
Sbjct: 124 SICADAAS 131
Score = 43.1 bits (100), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 565 VVPD----GVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLY 620
+ PD GVV S L S + TR+ I + G ++V+ A +VPDG++ FF SY
Sbjct: 354 ISPDQIWVGVVPVGPSGHSLNSSYRTRETIKYKQELGLVIVNFARIVPDGLLVFFPSYSM 413
Query: 621 LESVVASWYDQ 631
++ + W ++
Sbjct: 414 MDKCIDFWKNR 424
>gi|391868700|gb|EIT77910.1| helicase of the DEAD superfamily [Aspergillus oryzae 3.042]
Length = 734
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 5/175 (2%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V I + ++G+++G+CPY+ +R H++IV Y LL + + + + VVV
Sbjct: 190 VKDIEDIGKLGKDIGICPYYASRSVTKHSEIVTLPYPLLLQRSARDALDLSI-KGHVVVI 248
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 828
DEAHN+ + + SV I ++ ++ + T K + + + RLV +
Sbjct: 249 DEAHNLMDAISNIHSVTITLSELQTSLFQLTTYARKFKTRLKGKNRNYIAQVIRLVTSIT 308
Query: 829 DA-QSARETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEY 882
D ++ ET PV P +++ GK G+ + R + SKL + + Y
Sbjct: 309 DHLKTILETSQAPEGPVQPSDLMSGK---GVDQINPYKLCRYLRESKLARKVDGY 360
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 2/143 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V I + ++G+++G+CPY+ +R H++IV Y LL + + + + VVV
Sbjct: 190 VKDIEDIGKLGKDIGICPYYASRSVTKHSEIVTLPYPLLLQRSARDALDLSI-KGHVVVI 248
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 173
DEAHN+ + + SV I ++ ++ + T K + + + RLV +
Sbjct: 249 DEAHNLMDAISNIHSVTITLSELQTSLFQLTTYARKFKTRLKGKNRNYIAQVIRLVTSIT 308
Query: 174 DA-QSARETDVVLANPVLPDEIL 195
D ++ ET PV P +++
Sbjct: 309 DHLKTILETSQAPEGPVQPSDLM 331
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW-------YDQGIID 635
FETRD +I + G+ + + V+PDGVV FF SY YL V++ W ++ + D
Sbjct: 489 TFETRDSERMIVDLGRTMAALCQVIPDGVVAFFPSYDYLSQVLSIWKRTLAGEKNRTVYD 548
Query: 636 NLQKRKLLFIETQD 649
++ +K + E++D
Sbjct: 549 LIEGKKTILHESRD 562
Score = 43.5 bits (101), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVF 584
FETRD +I + G+ + + V+PDGVV FF SY YL V
Sbjct: 490 FETRDSERMIVDLGRTMAALCQVIPDGVVAFFPSYDYLSQVL 531
Score = 41.2 bits (95), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 441 YPEQYAYMVELKKALDAKGHCLLEMPSG--TGKTTSLLSLIVAYMN---AHPL------- 488
Y Q +M L ++ + E P+G G +T L L+ + + AHP
Sbjct: 15 YDIQLQFMRALYSCIEKGKVAVFESPTGKLAGLSTGTLELLKRFQHKSSAHPRQDEDYGD 74
Query: 489 DVTKLLYCSRTVPEIEKVVEELARL---------FDYYIKHNEEI--NMTGLVLSSRKNL 537
+ K+LYCSRT ++ + EL R+ F + + + + L L SRKNL
Sbjct: 75 EDIKILYCSRTHSQLTQFASELRRVNMPSSIPKDFSEGVADTDGLQEGVRHLSLGSRKNL 134
Query: 538 CIHSEFETRDDISVI 552
CI+ D+++ I
Sbjct: 135 CINPRVSYLDNVTAI 149
>gi|449448180|ref|XP_004141844.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Cucumis sativus]
Length = 914
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
+ R ++++ G LL +I VVP+G+V FF+S+ Y E V W GI+D + K+K +
Sbjct: 648 YNRRSSSAIVKELGLLLCNIVTVVPEGIVVFFSSFDYEEQVYGLWKTSGILDRIMKKKRI 707
Query: 644 FIETQDALDSRSVSKE 659
F E + D SV KE
Sbjct: 708 FREPRKNTDVESVLKE 723
Score = 44.3 bits (103), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I L +GR++G CPY+ +R + A ++V Y LL + L ++S+V+ DEA
Sbjct: 325 IEDLIHLGRKVGTCPYYGSRSLVQGADLIVLPYQSLLSKSSRESLGLVL-KNSIVIIDEA 383
Query: 117 HNI 119
HN+
Sbjct: 384 HNL 386
Score = 44.3 bits (103), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I L +GR++G CPY+ +R + A ++V Y LL + L ++S+V+ DEA
Sbjct: 325 IEDLIHLGRKVGTCPYYGSRSLVQGADLIVLPYQSLLSKSSRESLGLVL-KNSIVIIDEA 383
Query: 772 HNI 774
HN+
Sbjct: 384 HNL 386
>gi|410980592|ref|XP_003996661.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Felis catus]
Length = 1230
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 29 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G+N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTLEGMCKAWDIEELVSLGKKLKACPYYTARELIEDAH 363
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
IV Y+YLLD +I + L + +V+ DEAHNI++ +S S +
Sbjct: 364 IVFCPYNYLLDAQIRESMDINL-KEQIVILDEAHNIEDCARESASYSV 410
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 684 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G+N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTLEGMCKAWDIEELVSLGKKLKACPYYTARELIEDAH 363
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
IV Y+YLLD +I + L + +V+ DEAHNI++ +S S +
Sbjct: 364 IVFCPYNYLLDAQIRESMDINL-KEQIVILDEAHNIEDCARESASYSV 410
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY---MN 484
I + + FPY+ YP Q A M + + L++K HCLLE P+G+GK+ +LL +A+ N
Sbjct: 10 IGGVKITFPYK-AYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSVALLCSALAWQQSFN 68
Query: 485 AHPLD 489
P+D
Sbjct: 69 GKPVD 73
Score = 39.7 bits (91), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 554 NYGQLLVDIACVVPDG-VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVV 612
N Q+ V P G +C ++ + E+ FE +D++ G L++ + V G++
Sbjct: 642 NNSQVWVGTIGSGPKGRNLC--ATFQHTET-FEFQDEV------GALVLSVCQTVSQGIL 692
Query: 613 CFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
CF SY LE + W G+ NL+ K + +E
Sbjct: 693 CFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVE 726
>gi|410907467|ref|XP_003967213.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Takifugu rubripes]
Length = 979
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 570 VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWY 629
V+C S L+ F+ RD ++ G++L +I VVP GVVCFF SY YL + + W
Sbjct: 735 VLCNGPSGQELDFTFQNRDSPHMMDETGRILSNICNVVPGGVVCFFPSYEYLRRITSHWE 794
Query: 630 DQGIIDNLQKRKLLFIE 646
G + L +K +F E
Sbjct: 795 TNGTLARLANKKKIFHE 811
Score = 46.2 bits (108), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 10 VDGRCHSLTSSSVRDRH-------KAGENIPVCDFYEKFDAVGR-EAPLAPGVYSITKLK 61
++ RC + + +H K G C Y K A+ R + V I +L
Sbjct: 350 INDRCMEMQKNKHEKQHQEDGAKRKRGPAKSTCP-YNKAPALQRMRDEILGAVQDIEQLL 408
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121
++G E CPY+ AR I A++VV Y LL +L + VV+ DEAHN+ +
Sbjct: 409 KLGSETRSCPYYSARLTIPPAQLVVLPYQMLLHEATRRAAGVQL-KGQVVIIDEAHNLSD 467
Query: 122 V 122
Sbjct: 468 T 468
Score = 46.2 bits (108), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 665 VDGRCHSLTSSSVRDRH-------KAGENIPVCDFYEKFDAVGR-EAPLAPGVYSITKLK 716
++ RC + + +H K G C Y K A+ R + V I +L
Sbjct: 350 INDRCMEMQKNKHEKQHQEDGAKRKRGPAKSTCP-YNKAPALQRMRDEILGAVQDIEQLL 408
Query: 717 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 776
++G E CPY+ AR I A++VV Y LL +L + VV+ DEAHN+ +
Sbjct: 409 KLGSETRSCPYYSARLTIPPAQLVVLPYQMLLHEATRRAAGVQL-KGQVVIIDEAHNLSD 467
Query: 777 V 777
Sbjct: 468 T 468
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV---FETRDDISVIRN 595
F+ RD ++ G++L +I VVP GVVCFF SY YL + +ET ++ + N
Sbjct: 749 FQNRDSPHMMDETGRILSNICNVVPGGVVCFFPSYEYLRRITSHWETNGTLARLAN 804
>gi|121799524|sp|Q2U587.1|CHL1_ASPOR RecName: Full=ATP-dependent RNA helicase chl1; AltName:
Full=Chromosome loss protein 1
gi|83773151|dbj|BAE63278.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 721
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 5/175 (2%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V I + ++G+++G+CPY+ +R H++IV Y LL + + + + VVV
Sbjct: 190 VKDIEDIGKLGKDIGICPYYASRSVTKHSEIVTLPYPLLLQRSARDALDLSI-KGHVVVI 248
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 828
DEAHN+ + + SV I ++ ++ + T K + + + RLV +
Sbjct: 249 DEAHNLMDAISNIHSVTITLSELQTSLFQLTTYARKFKTRLKGKNRNYIAQVIRLVTSIT 308
Query: 829 DA-QSARETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEY 882
D ++ ET PV P +++ GK G+ + R + SKL + + Y
Sbjct: 309 DHLKTILETSQAPEGPVQPSDLMSGK---GVDQINPYKLCRYLRESKLARKVDGY 360
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 2/143 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V I + ++G+++G+CPY+ +R H++IV Y LL + + + + VVV
Sbjct: 190 VKDIEDIGKLGKDIGICPYYASRSVTKHSEIVTLPYPLLLQRSARDALDLSI-KGHVVVI 248
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 173
DEAHN+ + + SV I ++ ++ + T K + + + RLV +
Sbjct: 249 DEAHNLMDAISNIHSVTITLSELQTSLFQLTTYARKFKTRLKGKNRNYIAQVIRLVTSIT 308
Query: 174 DA-QSARETDVVLANPVLPDEIL 195
D ++ ET PV P +++
Sbjct: 309 DHLKTILETSQAPEGPVQPSDLM 331
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 23/135 (17%)
Query: 441 YPEQYAYMVELKKALDAKGHCLLEMPSG--TGKTTSLLSLIVAYMN---AHPL------- 488
Y Q +M L ++ + E P+G G +T L L+ + + AHP
Sbjct: 15 YDIQLQFMRALYSCIEKGKVAVFESPTGKLAGLSTGTLELLKRFQHKSSAHPRQDEDYGD 74
Query: 489 DVTKLLYCSRTVPEIEKVVEELARL---------FDYYIKHNEEI--NMTGLVLSSRKNL 537
+ K+LYCSRT ++ + EL R+ F + + + + L L SRKNL
Sbjct: 75 EDIKILYCSRTHSQLTQFASELRRVNMPSSIPKDFSEGVADTDGLQEGVRHLSLGSRKNL 134
Query: 538 CIHSEFETRDDISVI 552
CI+ + D+++ I
Sbjct: 135 CINPRVSSLDNVTAI 149
>gi|297743289|emb|CBI36156.3| unnamed protein product [Vitis vinifera]
Length = 777
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 22/136 (16%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
I + V FP+E Y Q YM ++ ++L + + LLE P+GTGKT LL +A+ P
Sbjct: 6 IRGIDVDFPFE-AYDCQLVYMEKVIQSLQERCNALLESPTGTGKTLCLLCATLAWRKNVP 64
Query: 488 ------LDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHS 541
++ ++Y SRT ++ +V++EL R Y K +VL SR+ LCIH
Sbjct: 65 HSQSAKTNLPTIIYASRTHSQLRQVIQELKRT-SYRPKM--------VVLGSREQLCIHE 115
Query: 542 EFETRDDISVIRNYGQ 557
E +S++R Q
Sbjct: 116 E------VSLLRGRAQ 125
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 30/154 (19%)
Query: 7 GKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAP-LAPGVYSITKLKEMGR 65
G+ CHSL R R K G C Y + + P L I L +GR
Sbjct: 122 GRAQTNACHSL----CRKRTKKG----YCGHYSRVSDFMKYNPGLGDDPIDIEDLVNIGR 173
Query: 66 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVD 125
G CPY+++R+ I+ Y+YL+D +S +S+++FDEAHN++ +C D
Sbjct: 174 SNGPCPYYVSRELHKVVDILFAPYNYLIDRGNRKSLSV-CWNNSILIFDEAHNLEGLCAD 232
Query: 126 SLS--------------------VRINRRTIEKA 139
+ S + I+RR IEKA
Sbjct: 233 AASFDLPSWLLTACISEAKNCVDLSISRREIEKA 266
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 30/154 (19%)
Query: 662 GKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAP-LAPGVYSITKLKEMGR 720
G+ CHSL R R K G C Y + + P L I L +GR
Sbjct: 122 GRAQTNACHSL----CRKRTKKG----YCGHYSRVSDFMKYNPGLGDDPIDIEDLVNIGR 173
Query: 721 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVD 780
G CPY+++R+ I+ Y+YL+D +S +S+++FDEAHN++ +C D
Sbjct: 174 SNGPCPYYVSRELHKVVDILFAPYNYLIDRGNRKSLSV-CWNNSILIFDEAHNLEGLCAD 232
Query: 781 SLS--------------------VRINRRTIEKA 794
+ S + I+RR IEKA
Sbjct: 233 AASFDLPSWLLTACISEAKNCVDLSISRREIEKA 266
Score = 47.4 bits (111), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 488 LDVTKLLYCSRTVPEIEKVVEEL-----ARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
L V+ ++ S T+ +E +EL RL + ++ + +I G+V + +S
Sbjct: 470 LGVSSIILTSGTLSPLESFAQELKLEFPVRLENPHVISSNQI-WAGVVPAGPSGCSFNSS 528
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLE 581
+ TRD + + G +V+ A +VPDG++ FF SY LE
Sbjct: 529 YRTRDSLEYKQELGNAIVNFARIVPDGLLVFFPSYYILE 567
Score = 47.4 bits (111), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 569 GVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW 628
GVV S S + TRD + + G +V+ A +VPDG++ FF SY LE V W
Sbjct: 514 GVVPAGPSGCSFNSSYRTRDSLEYKQELGNAIVNFARIVPDGLLVFFPSYYILEQCVGCW 573
Query: 629 YDQ 631
++
Sbjct: 574 KNK 576
>gi|397486822|ref|XP_003814520.1| PREDICTED: Fanconi anemia group J protein [Pan paniscus]
Length = 1249
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 29 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G+N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKSCPYYTARELIQDAD 363
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 136
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +R R +
Sbjct: 364 IIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422
Query: 137 EKAVGN 142
+ V N
Sbjct: 423 DSMVNN 428
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 684 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G+N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKSCPYYTARELIQDAD 363
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 791
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +R R +
Sbjct: 364 IIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422
Query: 792 EKAVGN 797
+ V N
Sbjct: 423 DSMVNN 428
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY---MN 484
I + ++FPY+ YP Q A M + + L++K HCLLE P+G+GK+ +LL +A+ ++
Sbjct: 10 IGGVKIYFPYK-AYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQSLS 68
Query: 485 AHPLD 489
P D
Sbjct: 69 GKPAD 73
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKL 642
FE +D++ G LL+ + V G++CF SY LE + W G+ NL+ K
Sbjct: 669 TFEFQDEV------GALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKT 722
Query: 643 LFIETQDA 650
+ +E Q
Sbjct: 723 VIVEPQGG 730
>gi|114669761|ref|XP_511607.2| PREDICTED: Fanconi anemia group J protein [Pan troglodytes]
gi|410223276|gb|JAA08857.1| BRCA1 interacting protein C-terminal helicase 1 [Pan troglodytes]
gi|410257750|gb|JAA16842.1| BRCA1 interacting protein C-terminal helicase 1 [Pan troglodytes]
gi|410303552|gb|JAA30376.1| BRCA1 interacting protein C-terminal helicase 1 [Pan troglodytes]
gi|410331379|gb|JAA34636.1| BRCA1 interacting protein C-terminal helicase 1 [Pan troglodytes]
Length = 1249
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 29 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G+N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKSCPYYTARELIQDAD 363
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 136
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +R R +
Sbjct: 364 IIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422
Query: 137 EKAVGN 142
+ V N
Sbjct: 423 DSMVNN 428
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 684 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G+N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKSCPYYTARELIQDAD 363
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 791
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +R R +
Sbjct: 364 IIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422
Query: 792 EKAVGN 797
+ V N
Sbjct: 423 DSMVNN 428
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY---MN 484
I + ++FPY+ YP Q A M + + L++K HCLLE P+G+GK+ +LL +A+ ++
Sbjct: 10 IGGVKIYFPYK-AYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQSLS 68
Query: 485 AHPLD 489
P D
Sbjct: 69 GKPAD 73
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKL 642
FE +D++ G LL+ + V G++CF SY LE + W G+ NL+ K
Sbjct: 669 TFEFQDEV------GALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKT 722
Query: 643 LFIETQDA 650
+ +E Q
Sbjct: 723 VIVEPQGG 730
>gi|426347251|ref|XP_004041270.1| PREDICTED: Fanconi anemia group J protein-like, partial [Gorilla
gorilla gorilla]
Length = 491
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 29 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G+N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDAD 363
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 136
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +R R +
Sbjct: 364 IIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422
Query: 137 EKAVGN 142
+ V N
Sbjct: 423 DSMVNN 428
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 684 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G+N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDAD 363
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 791
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +R R +
Sbjct: 364 IIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422
Query: 792 EKAVGN 797
+ V N
Sbjct: 423 DSMVNN 428
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
I + ++FP + YP Q A M + + L++K HCLLE P+G+GK+ +LL +A+ +
Sbjct: 10 IGGVKIYFPCK-AYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQS 66
>gi|425778625|gb|EKV16743.1| hypothetical protein PDIG_19320 [Penicillium digitatum PHI26]
gi|425784169|gb|EKV21962.1| hypothetical protein PDIP_01290 [Penicillium digitatum Pd1]
Length = 974
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 83/176 (47%), Gaps = 5/176 (2%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V I + ++G++LG+CPY+ +R I H++IV Y LL ++ + + +V+
Sbjct: 307 VKDIEDIAQVGKKLGICPYYASRPVIKHSEIVTLPYQLLLQRSAREALNISV-KGHIVII 365
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 828
DEAHN+ + SV ++ + A+G + T K + + + RLV +
Sbjct: 366 DEAHNLMDAITGIHSVTVSLNQLRTAIGQLTTYARKFKNKLKGKNRNYVAQVIRLVSSIA 425
Query: 829 D-AQSARETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
+ +S + + L V +++ GK G+ + +R + SKL + + YL
Sbjct: 426 EHMESISQQNGPLEGSVQTSDLMTGK---GVDQINPYKLSRYLQESKLARKVDGYL 478
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V I + ++G++LG+CPY+ +R I H++IV Y LL ++ + + +V+
Sbjct: 307 VKDIEDIAQVGKKLGICPYYASRPVIKHSEIVTLPYQLLLQRSAREALNISV-KGHIVII 365
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL 172
DEAHN+ + SV ++ + A+G + T K + + + RLV +
Sbjct: 366 DEAHNLMDAITGIHSVTVSLNQLRTAIGQLTTYARKFKNKLKGKNRNYVAQVIRLVSSI 424
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW-------YDQGIID 635
+E R+ +I + G+ + + V+PDGVV FF SY YL V+ W Q ++
Sbjct: 606 TYEARNSERMITDLGRTMATLCQVIPDGVVAFFPSYDYLSHVLGVWKKPIPNGNGQSTLN 665
Query: 636 NLQKRKLLFIETQDAL 651
L+++K + E+++A+
Sbjct: 666 LLERKKKIIYESREAM 681
>gi|395538820|ref|XP_003771372.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein 8
[Sarcophilus harrisii]
Length = 901
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE +++ R+ ++ G++L ++ VVP G+
Sbjct: 644 VVEFSCGHVIPPDNILPIVLCSGPSNQQLEFIYQKRELPQMMDEVGRILCNLCNVVPGGL 703
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF+SY YL + A W G++ L +K +F E A
Sbjct: 704 VCFFSSYDYLHKIHAHWKQSGLLTRLAVKKKIFQEPNRA 742
Score = 46.6 bits (109), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 9 IVDGRCHSLTSSSVRDRHKAGENIP--------VCDFY--EKFDAVGREAPLAPGVYSIT 58
+++ RC + S ++K E C FY E+ + E + V I
Sbjct: 278 LINDRCLEMQKSKHEKKNKEDEKAKKRKTETHTSCPFYNYEQMQFLRDEVLME--VKDIE 335
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+L +G+E CPY+ +R AI A++VV Y LL + +L + VV+ DEAHN
Sbjct: 336 QLVVLGKETHACPYYGSRFAIPSAQLVVLPYQMLLHAATRHAAGIKL-QGQVVIIDEAHN 394
Query: 119 IDNVCVDSLSVRIN 132
+ + S +N
Sbjct: 395 LIDSITSIHSAEVN 408
Score = 46.6 bits (109), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 664 IVDGRCHSLTSSSVRDRHKAGENIP--------VCDFY--EKFDAVGREAPLAPGVYSIT 713
+++ RC + S ++K E C FY E+ + E + V I
Sbjct: 278 LINDRCLEMQKSKHEKKNKEDEKAKKRKTETHTSCPFYNYEQMQFLRDEVLME--VKDIE 335
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
+L +G+E CPY+ +R AI A++VV Y LL + +L + VV+ DEAHN
Sbjct: 336 QLVVLGKETHACPYYGSRFAIPSAQLVVLPYQMLLHAATRHAAGIKL-QGQVVIIDEAHN 394
Query: 774 IDNVCVDSLSVRIN 787
+ + S +N
Sbjct: 395 LIDSITSIHSAEVN 408
>gi|149712588|ref|XP_001490646.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 [Equus
caballus]
Length = 906
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD VVC S LE ++ R+ ++ G++L ++ VVP GV
Sbjct: 644 VVEFSCGHVIPPDNILPLVVCSGPSNQQLEFTYQQRELPQMMTETGRILCNLCNVVPGGV 703
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY Y V A W G++ L RK +F E + A
Sbjct: 704 VCFFPSYEYQRQVHAHWDKSGLLARLAVRKKIFQEPKRA 742
Score = 47.0 bits (110), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 14/123 (11%)
Query: 8 KIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFY--EKFDAVGREAPLAPGVYS 56
++++ RC + + + +A E P C FY E+ + E + V
Sbjct: 278 QLINDRCVEMQRNKHERKSEAEEEKPKKRRQEPRATCPFYNYEQLQLLRDEVLVE--VKD 335
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I +L +G+E CPY+ +R AI A++VV Y LL L + VVV DEA
Sbjct: 336 IEQLVTLGKEAHACPYYGSRFAIPAAQLVVLPYQMLLHAATRQAAGIRL-QGQVVVIDEA 394
Query: 117 HNI 119
HN+
Sbjct: 395 HNL 397
Score = 47.0 bits (110), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 14/123 (11%)
Query: 663 KIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFY--EKFDAVGREAPLAPGVYS 711
++++ RC + + + +A E P C FY E+ + E + V
Sbjct: 278 QLINDRCVEMQRNKHERKSEAEEEKPKKRRQEPRATCPFYNYEQLQLLRDEVLVE--VKD 335
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I +L +G+E CPY+ +R AI A++VV Y LL L + VVV DEA
Sbjct: 336 IEQLVTLGKEAHACPYYGSRFAIPAAQLVVLPYQMLLHAATRQAAGIRL-QGQVVVIDEA 394
Query: 772 HNI 774
HN+
Sbjct: 395 HNL 397
>gi|345792101|ref|XP_543872.3| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 [Canis
lupus familiaris]
Length = 905
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDGV----VCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD + +C S LE ++ R+ ++ G++L ++ VVP GV
Sbjct: 643 VVEFSCGHVIPPDNILPLIICSGPSSQQLEFTYQKRELPQMMDETGRILCNLCTVVPGGV 702
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY Y V A W G++ L RK +F E + A
Sbjct: 703 VCFFPSYEYQRQVYAHWDKSGLLARLAVRKKIFQEPKRA 741
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 8 KIVDGRCHSLTSSSVRDR-------HKAGENIPVCDFY--EKFDAVGREAPLAPGVYSIT 58
++++ RC + S +R + E+ C FY E+ + R+ L GV I
Sbjct: 279 QLINDRCMEMQRSKHENRAEEEKPKRRRQEHQAACPFYNYEQLQLL-RDQVLV-GVKDIE 336
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+L +G+E CPY+ +R AI A++VV Y LL L + VVV DEAHN
Sbjct: 337 QLVALGKEARACPYYGSRFAIPAAQLVVLPYQMLLHAATRQAAGIRL-QGQVVVIDEAHN 395
Query: 119 IDNVCVDSLSVRIN 132
+ + SV ++
Sbjct: 396 LIDTITGIHSVEVS 409
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 663 KIVDGRCHSLTSSSVRDR-------HKAGENIPVCDFY--EKFDAVGREAPLAPGVYSIT 713
++++ RC + S +R + E+ C FY E+ + R+ L GV I
Sbjct: 279 QLINDRCMEMQRSKHENRAEEEKPKRRRQEHQAACPFYNYEQLQLL-RDQVLV-GVKDIE 336
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
+L +G+E CPY+ +R AI A++VV Y LL L + VVV DEAHN
Sbjct: 337 QLVALGKEARACPYYGSRFAIPAAQLVVLPYQMLLHAATRQAAGIRL-QGQVVVIDEAHN 395
Query: 774 IDNVCVDSLSVRIN 787
+ + SV ++
Sbjct: 396 LIDTITGIHSVEVS 409
>gi|326433574|gb|EGD79144.1| hypothetical protein PTSG_09876 [Salpingoeca sp. ATCC 50818]
Length = 879
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 55 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 114
+ + L G+ + CPY+ +R+ + A IV Y+YL+DP I + + A +++++ D
Sbjct: 318 WDLEDLVSAGKRIRGCPYYASREMLPSADIVFCPYNYLIDPVIRSTMDINPA-NAIIILD 376
Query: 115 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 144
EAHNI++V DS S + +E A+ ++Q
Sbjct: 377 EAHNIEDVARDSASTSLTVEALESAITDLQ 406
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 710 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 769
+ + L G+ + CPY+ +R+ + A IV Y+YL+DP I + + A +++++ D
Sbjct: 318 WDLEDLVSAGKRIRGCPYYASREMLPSADIVFCPYNYLIDPVIRSTMDINPA-NAIIILD 376
Query: 770 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 799
EAHNI++V DS S + +E A+ ++Q
Sbjct: 377 EAHNIEDVARDSASTSLTVEALESAITDLQ 406
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 433 VFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTK 492
+ FP++ YP Q+ + + KALD + LLE P+G+GK+ +LL +A+ A + T+
Sbjct: 11 IVFPFK-PYPSQFLLISAILKALDKGDNALLESPTGSGKSLALLCASLAWQKA---ERTR 66
Query: 493 LL 494
LL
Sbjct: 67 LL 68
>gi|301777952|ref|XP_002924394.1| PREDICTED: Fanconi anemia group J protein-like [Ailuropoda
melanoleuca]
gi|281342514|gb|EFB18098.1| hypothetical protein PANDA_013720 [Ailuropoda melanoleuca]
Length = 1249
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 29 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G+N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTLQGMCKAWDIEELVSLGKKLKACPYYTARELIEDAH 363
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 136
I+ Y+YLLD +I + L + +V+ DEAHNI++ +S S +R R +
Sbjct: 364 IIFCPYNYLLDAQIRESMDINL-KEQIVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422
Query: 137 EKAVGN 142
+ V N
Sbjct: 423 DSMVNN 428
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 684 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G+N C FY + + L + I +L +G++L CPY+ AR+ I A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTLQGMCKAWDIEELVSLGKKLKACPYYTARELIEDAH 363
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 791
I+ Y+YLLD +I + L + +V+ DEAHNI++ +S S +R R +
Sbjct: 364 IIFCPYNYLLDAQIRESMDINL-KEQIVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422
Query: 792 EKAVGN 797
+ V N
Sbjct: 423 DSMVNN 428
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY---MN 484
I + + FPY+ YP Q A M + + L++K HCLLE P+G+GK+ +LL +A+ ++
Sbjct: 10 IGGVKITFPYK-AYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCSALAWQQSLS 68
Query: 485 AHPLD 489
P+D
Sbjct: 69 GKPVD 73
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 554 NYGQLLVDIACVVPDG-VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVV 612
N Q+ V P G +C ++ + E+ FE +D++ G+LL+ + V G++
Sbjct: 642 NNSQVWVGTIGSGPKGRNLC--ATFQHTET-FEFQDEV------GELLLSVCQTVSQGIL 692
Query: 613 CFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
CF SY LE + W D G+ DNL+ K + +E Q
Sbjct: 693 CFLPSYKLLEKLKERWLDTGLWDNLELVKTVIVEPQGG 730
>gi|408390405|gb|EKJ69805.1| hypothetical protein FPSE_10005 [Fusarium pseudograminearum CS3096]
Length = 863
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 14/103 (13%)
Query: 562 IAC--VVPDGVVCFFT------SYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVC 613
++C V+P +C +T E F+ R D +I G ++++ +VPDGVV
Sbjct: 586 LSCGHVIPPENLCVWTLASPRPGAPPFEFSFQKRGDTEMITQLGLAILNLCSLVPDGVVI 645
Query: 614 FFTSYLYLESVVASWYD------QGIIDNLQKRKLLFIETQDA 650
FF SY YL+ VVA W Q + D L RK LF ET+ A
Sbjct: 646 FFPSYGYLDEVVAVWQKSQGASTQSVWDRLGTRKALFKETRGA 688
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 24/184 (13%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVG-----REAPLAPGV 709
+VS+ + ++ RC L + K+G+ C F K D + R++ LA +
Sbjct: 265 AVSRLGSVQAINDRCSEL------QQPKSGQK---CPFVPKEDLLSQTHQFRDSALAT-L 314
Query: 710 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 769
I L ++G+ L +CPY+ +R A+ A+I+ Y LL + + +L S+V+ D
Sbjct: 315 PDIEDLHQLGKSLAVCPYYASRTALPGAEIITLPYPLLLQKSARDALGVKL-EGSIVIVD 373
Query: 770 EAHNIDNVCVDSLSVRINRRTIEKAVGN----IQTLEGTLKEMKEADSAKLREEYARLVE 825
EAHNI + + + I + + G ++ LK + + ++ AR+++
Sbjct: 374 EAHNIMDAVANVHAAEIKLSDLRRGRGMLGVYVKRFGKKLKGVNRVNVGRV----ARVID 429
Query: 826 GLRD 829
GL +
Sbjct: 430 GLSE 433
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 82/176 (46%), Gaps = 24/176 (13%)
Query: 8 KIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVG-----REAPLAPGVYSITKLKE 62
+ ++ RC L + K+G+ C F K D + R++ LA + I L +
Sbjct: 273 QAINDRCSEL------QQPKSGQK---CPFVPKEDLLSQTHQFRDSALAT-LPDIEDLHQ 322
Query: 63 MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNV 122
+G+ L +CPY+ +R A+ A+I+ Y LL + + +L S+V+ DEAHNI +
Sbjct: 323 LGKSLAVCPYYASRTALPGAEIITLPYPLLLQKSARDALGVKL-EGSIVIVDEAHNIMDA 381
Query: 123 CVDSLSVRINRRTIEKAVGN----IQTLEGTLKEMKEADSAKLREEYARLVEGLRD 174
+ + I + + G ++ LK + + ++ AR+++GL +
Sbjct: 382 VANVHAAEIKLSDLRRGRGMLGVYVKRFGKKLKGVNRVNVGRV----ARVIDGLSE 433
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
F+ R D +I G ++++ +VPDGVV FF SY YL+ V
Sbjct: 616 FQKRGDTEMITQLGLAILNLCSLVPDGVVIFFPSYGYLDEV 656
>gi|302689377|ref|XP_003034368.1| hypothetical protein SCHCODRAFT_53201 [Schizophyllum commune H4-8]
gi|300108063|gb|EFI99465.1| hypothetical protein SCHCODRAFT_53201 [Schizophyllum commune H4-8]
Length = 869
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
LE E + D I GQ+L ++ CV P G+V FF SY +L + A+W G + L+
Sbjct: 628 LEFKAERQKDPVAIEELGQILFNLVCVTPKGMVVFFPSYSFLNAAKAAWGQSGALGRLEG 687
Query: 640 RKLLFIETQDALD 652
RK +F E ++ D
Sbjct: 688 RKKIFFEPEETTD 700
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I +L GR G+CPYF +R+AI A++V Y+ L + +L + +VV DEA
Sbjct: 318 IEELAATGRASGICPYFGSRKAIDQAELVTLPYNLLFQRSAREALGIDL-KDQIVVIDEA 376
Query: 117 HNI 119
HN+
Sbjct: 377 HNV 379
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I +L GR G+CPYF +R+AI A++V Y+ L + +L + +VV DEA
Sbjct: 318 IEELAATGRASGICPYFGSRKAIDQAELVTLPYNLLFQRSAREALGIDL-KDQIVVIDEA 376
Query: 772 HNI 774
HN+
Sbjct: 377 HNV 379
Score = 40.4 bits (93), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAH 486
FPY Y Q M L + L++K ++E P+GTGKT SLL+ + ++ H
Sbjct: 20 FPYPQPYQIQLDLMRHLYEVLESKKISIVESPTGTGKTLSLLTASLTWLRDH 71
>gi|412986103|emb|CCO17303.1| predicted protein [Bathycoccus prasinos]
Length = 1048
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL-ARSSVVVFDE 115
I +L M + C Y+ ARQA +A I+ Y LL P + + EL +++VV+FDE
Sbjct: 402 IEELSSMATKTKSCAYYAARQASKNADIIFMPYASLLAPDTRDALGIELDPKNTVVIFDE 461
Query: 116 AHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKL 161
AHN+ + S S + RR + +A+ I+ KE AD+ ++
Sbjct: 462 AHNVADAVRSSSSASMTRRDVNRAISMIENYIDRFKERLTADNLRV 507
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL-ARSSVVVFDE 770
I +L M + C Y+ ARQA +A I+ Y LL P + + EL +++VV+FDE
Sbjct: 402 IEELSSMATKTKSCAYYAARQASKNADIIFMPYASLLAPDTRDALGIELDPKNTVVIFDE 461
Query: 771 AHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKL 816
AHN+ + S S + RR + +A+ I+ KE AD+ ++
Sbjct: 462 AHNVADAVRSSSSASMTRRDVNRAISMIENYIDRFKERLTADNLRV 507
>gi|240279285|gb|EER42790.1| DEAD_2 protein [Ajellomyces capsulatus H143]
gi|325089554|gb|EGC42864.1| DEAD-box protein [Ajellomyces capsulatus H88]
Length = 507
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQ------GIIDN 636
+ R+D S+I + G+ + + CV+PDGVV FF SY YL V+ W IID+
Sbjct: 48 TYGKRNDESMITDLGRTIATLCCVIPDGVVVFFPSYDYLNQVLMIWKKHILTTGSSIIDS 107
Query: 637 LQKRKLLFIETQD 649
+Q+ K +F E+QD
Sbjct: 108 IQRSKAVFHESQD 120
>gi|351702333|gb|EHB05252.1| Putative ATP-dependent RNA helicase DDX11-like protein
[Heterocephalus glaber]
Length = 953
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C + LE ++ R+ +++ G++L ++ VVP G+
Sbjct: 670 VVEFSCGHVIPPDNILPLVLCSGPTNQQLEFTYQKREVPAMMDEAGRILCNLCNVVPGGL 729
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY Y V+A W G++ L RK +F E + A
Sbjct: 730 VCFFPSYEYQHQVLAHWGKSGLLTRLAVRKKIFQEPKRA 768
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 16/134 (11%)
Query: 8 KIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFYEKFDAVGREAPLAPGVYSIT 58
++++ RC + S + + +A E P C FY + V +
Sbjct: 310 QLINDRCVEIQRSQHKSKSRAEEEKPKRRRQEARAACPFYNHEQMQLLRDEILVEVRDVE 369
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+L +G+E CPY+ +R AI A++VV Y I + VV+ DEAHN
Sbjct: 370 QLVALGKEARACPYYGSRLAIAAAQLVVLPYPTRQAAGIR-------LQGQVVIIDEAHN 422
Query: 119 IDNVCVDSLSVRIN 132
+ + SV +
Sbjct: 423 LIDTITGIHSVEVT 436
Score = 41.2 bits (95), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 16/134 (11%)
Query: 663 KIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFYEKFDAVGREAPLAPGVYSIT 713
++++ RC + S + + +A E P C FY + V +
Sbjct: 310 QLINDRCVEIQRSQHKSKSRAEEEKPKRRRQEARAACPFYNHEQMQLLRDEILVEVRDVE 369
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
+L +G+E CPY+ +R AI A++VV Y I + VV+ DEAHN
Sbjct: 370 QLVALGKEARACPYYGSRLAIAAAQLVVLPYPTRQAAGIR-------LQGQVVIIDEAHN 422
Query: 774 IDNVCVDSLSVRIN 787
+ + SV +
Sbjct: 423 LIDTITGIHSVEVT 436
>gi|344278065|ref|XP_003410817.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Loxodonta africana]
Length = 904
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDGV----VCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD + +C S LE ++ R+ ++ G++L ++ VVP GV
Sbjct: 642 VVEFSCGHVIPPDNILPLIICSGPSNQQLEFTYQKRELPQMMDETGRILCNLCNVVPGGV 701
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL V A W G++ L +K +F E + A
Sbjct: 702 VCFFPSYEYLRQVYARWEQSGLLVRLAVKKKIFQEPKRA 740
Score = 46.6 bits (109), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V I +L MG+E CPY+ +R AI A++VV Y LL L + VV+
Sbjct: 331 VKDIEQLVAMGKEARACPYYGSRFAIPAAQLVVLPYQMLLHAATRQAAGVRL-QGQVVII 389
Query: 114 DEAHNI 119
DEAHN+
Sbjct: 390 DEAHNL 395
Score = 46.6 bits (109), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V I +L MG+E CPY+ +R AI A++VV Y LL L + VV+
Sbjct: 331 VKDIEQLVAMGKEARACPYYGSRFAIPAAQLVVLPYQMLLHAATRQAAGVRL-QGQVVII 389
Query: 769 DEAHNI 774
DEAHN+
Sbjct: 390 DEAHNL 395
Score = 42.7 bits (99), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVF 584
++ S N + ++ R+ ++ G++L ++ VVP GVVCFF SY YL V+
Sbjct: 660 IICSGPSNQQLEFTYQKRELPQMMDETGRILCNLCNVVPGGVVCFFPSYEYLRQVY 715
>gi|345325239|ref|XP_001508332.2| PREDICTED: regulator of telomere elongation helicase 1
[Ornithorhynchus anatinus]
Length = 1585
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
C FY + E L + I L + G + +CPY+ +R A I+ Y+YLLD
Sbjct: 172 CYFYNNVEEKSTEKELITSILDIEDLVKSGSKHKVCPYYFSRSLKQQADIIFMPYNYLLD 231
Query: 95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K +
Sbjct: 232 SKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPYDLASGLDVINQVLEEQAKVL 290
Query: 154 KEAD-SAKLREEYA 166
++ + A+ E+A
Sbjct: 291 QQNEIQAEFNMEFA 304
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
C FY + E L + I L + G + +CPY+ +R A I+ Y+YLLD
Sbjct: 172 CYFYNNVEEKSTEKELITSILDIEDLVKSGSKHKVCPYYFSRSLKQQADIIFMPYNYLLD 231
Query: 750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
K + +L + +VV+FDEAHN++ +C +S S + + + I Q LE K +
Sbjct: 232 SKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPYDLASGLDVINQVLEEQAKVL 290
Query: 809 KEAD-SAKLREEYA 821
++ + A+ E+A
Sbjct: 291 QQNEIQAEFNMEFA 304
>gi|300122781|emb|CBK23798.2| unnamed protein product [Blastocystis hominis]
gi|300175035|emb|CBK20346.2| unnamed protein product [Blastocystis hominis]
Length = 257
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 70 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL-ARSSVVVFDEAHNIDNVCVDSLS 128
CPYF AR + A ++V++Y Y+LDP I+ ++ + ++++++FDE HNID+V ++ S
Sbjct: 56 CPYFFARSCLDDADVIVFNYQYVLDPSISPLILPHINNQNNILLFDEGHNIDDVLCENYS 115
Query: 129 VRI 131
V I
Sbjct: 116 VTI 118
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 725 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL-ARSSVVVFDEAHNIDNVCVDSLS 783
CPYF AR + A ++V++Y Y+LDP I+ ++ + ++++++FDE HNID+V ++ S
Sbjct: 56 CPYFFARSCLDDADVIVFNYQYVLDPSISPLILPHINNQNNILLFDEGHNIDDVLCENYS 115
Query: 784 VRI 786
V I
Sbjct: 116 VTI 118
>gi|449482368|ref|XP_002193292.2| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Taeniopygia guttata]
Length = 913
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 570 VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWY 629
++C S LE ++TRD ++ G++L ++ V+P GVVCFF SY Y + V W
Sbjct: 650 ILCSGPSNQQLEFTYQTRDLPQMMDETGRILSNLCNVIPGGVVCFFPSYEYEKQVYGHWE 709
Query: 630 DQGIIDNLQKRKLLFIETQDA 650
G++ L +K +F E + A
Sbjct: 710 KTGLLSRLASKKKIFQEPKKA 730
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 29/242 (11%)
Query: 663 KIVDGRC-------HSLTSSSVRDRHKAGENIPVCDFY--EKFDAVGREAPLAPGVYSIT 713
++++ RC H SS + K + +C FY E+ + E + V I
Sbjct: 262 QLINDRCMEMQKNKHEKKSSEENEGKKRRVSRAMCPFYSFEQMQFLRDEVLVE--VKDIE 319
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
+L +GRE CPY+ +R AI A++VV Y LL N +L + VV+ DEAHN
Sbjct: 320 QLVSLGRETKACPYYGSRFAIPAAQLVVLPYQMLLHEPTRNAAGIKL-KDQVVIIDEAHN 378
Query: 774 -IDNV-CVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLR------EEYARLVE 825
ID + C+ S V ++ + + Q +E K +K + ++ E++ ++
Sbjct: 379 LIDTITCIHSAEVSGSQLCCAHSQLS-QYMERYRKHLKAKNLMYIKQILYLLEQFVAMLG 437
Query: 826 GLRD----AQSARETDVVLANPVLPDEILQGKTDYGIMIFADKRFA-RSDKRSKLPKWIQ 880
G + Q+ ET VL + + D + Q +TD I +F +R+ +S KL +++
Sbjct: 438 GNVNQNPGCQAVSETGTVLKS--INDFLFQSQTD-NINLFKVQRYCEKSLISRKLLGFVE 494
Query: 881 EY 882
Y
Sbjct: 495 RY 496
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 14/133 (10%)
Query: 8 KIVDGRC-------HSLTSSSVRDRHKAGENIPVCDFY--EKFDAVGREAPLAPGVYSIT 58
++++ RC H SS + K + +C FY E+ + E + V I
Sbjct: 262 QLINDRCMEMQKNKHEKKSSEENEGKKRRVSRAMCPFYSFEQMQFLRDEVLVE--VKDIE 319
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+L +GRE CPY+ +R AI A++VV Y LL N +L + VV+ DEAHN
Sbjct: 320 QLVSLGRETKACPYYGSRFAIPAAQLVVLPYQMLLHEPTRNAAGIKL-KDQVVIIDEAHN 378
Query: 119 -IDNV-CVDSLSV 129
ID + C+ S V
Sbjct: 379 LIDTITCIHSAEV 391
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVF 584
++ S N + ++TRD ++ G++L ++ V+P GVVCFF SY Y + V+
Sbjct: 650 ILCSGPSNQQLEFTYQTRDLPQMMDETGRILSNLCNVIPGGVVCFFPSYEYEKQVY 705
>gi|432863481|ref|XP_004070088.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Oryzias latipes]
Length = 859
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 559 LVDIAC--VVPDG-----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ AC V+P V+C S L+ F++RD ++ G++L +I VVP GV
Sbjct: 629 IVEFACGHVIPPENILPIVMCSGPSGQELDFTFQSRDLPCMMDETGRILSNICNVVPGGV 688
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
VCFF SY YL ++ W G + L +K +F E
Sbjct: 689 VCFFPSYEYLRRIMCHWEASGALTRLSNKKKIFQE 723
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 25 RHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKI 84
+ K G VC F + + VY I +L ++G+++ CPY+ R AI AK+
Sbjct: 284 KRKRGPAKSVCPFNKASALQQMRDEVLGTVYDIEQLIKVGKDIHSCPYYATRLAIPPAKL 343
Query: 85 VVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNV--CVDS 126
VV Y +L +L + VV+ DEAHN+ + C+ S
Sbjct: 344 VVLPYQMVLHEATRRAAGVQL-KGQVVIIDEAHNLSDTLSCIHS 386
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 680 RHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKI 739
+ K G VC F + + VY I +L ++G+++ CPY+ R AI AK+
Sbjct: 284 KRKRGPAKSVCPFNKASALQQMRDEVLGTVYDIEQLIKVGKDIHSCPYYATRLAIPPAKL 343
Query: 740 VVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNV--CVDS 781
VV Y +L +L + VV+ DEAHN+ + C+ S
Sbjct: 344 VVLPYQMVLHEATRRAAGVQL-KGQVVIIDEAHNLSDTLSCIHS 386
Score = 43.5 bits (101), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVF 584
F++RD ++ G++L +I VVP GVVCFF SY YL +
Sbjct: 661 FQSRDLPCMMDETGRILSNICNVVPGGVVCFFPSYEYLRRIM 702
>gi|407853226|gb|EKG06303.1| helicase-like protein, putative [Trypanosoma cruzi]
Length = 956
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 35 CDFYEKFDAVGREA---PLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
C+ + +G A PL G V+ + L G CPY+ R+ + A +
Sbjct: 241 CEAVCNYGVLGSRAISHPLHQGRLEKVWDMEDLVAEGVATQSCPYYATRELVFFAHVNFA 300
Query: 88 SYHYLLDPKIANVVSKE--LARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 145
+Y YLLDP I + E L S+++FDEAHN+ +VC D+LS+ + + I+
Sbjct: 301 TYQYLLDPLIRHECKMEAALKNHSIIIFDEAHNVPSVCQDALSLETTLDNLRLVLSEIEP 360
Query: 146 L 146
L
Sbjct: 361 L 361
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 690 CDFYEKFDAVGREA---PLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
C+ + +G A PL G V+ + L G CPY+ R+ + A +
Sbjct: 241 CEAVCNYGVLGSRAISHPLHQGRLEKVWDMEDLVAEGVATQSCPYYATRELVFFAHVNFA 300
Query: 743 SYHYLLDPKIANVVSKE--LARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 800
+Y YLLDP I + E L S+++FDEAHN+ +VC D+LS+ + + I+
Sbjct: 301 TYQYLLDPLIRHECKMEAALKNHSIIIFDEAHNVPSVCQDALSLETTLDNLRLVLSEIEP 360
Query: 801 L 801
L
Sbjct: 361 L 361
>gi|321248407|ref|XP_003191119.1| CHL1 helicase [Cryptococcus gattii WM276]
gi|317457586|gb|ADV19332.1| CHL1 helicase, putative [Cryptococcus gattii WM276]
Length = 854
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
E F R+D +++ + G +L I VVPDGVV F SY +L+ V A W G++ L +
Sbjct: 611 FEFKFGNRNDEALLTDLGAVLQAIIGVVPDGVVVFLPSYAFLDKVRAFWMKSGLLQRLGE 670
Query: 640 RK-LLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDR 680
RK LF E Q + D ++ RD + CH+ +++ + R
Sbjct: 671 RKQQLFYEPQTSGDVETIL--RDYALAITSCHATSAAGQKSR 710
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V I + +G++ +CPY+ R+A+ ++IV Y+ LL + L ++ VVV
Sbjct: 289 VKDIEDIVAVGKKSCVCPYYATRKAVKQSQIVTLPYNLLLQKNAREALGINL-KNQVVVI 347
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL 172
DEAHN+ + + S + + A+ ++ K ++ + ++ L++GL
Sbjct: 348 DEAHNLIDTILSIYSTTLTSVNLANALSQLRQYLQRFKSRLKSKHSLWIQQVLSLLQGL 406
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V I + +G++ +CPY+ R+A+ ++IV Y+ LL + L ++ VVV
Sbjct: 289 VKDIEDIVAVGKKSCVCPYYATRKAVKQSQIVTLPYNLLLQKNAREALGINL-KNQVVVI 347
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL 827
DEAHN+ + + S + + A+ ++ K ++ + ++ L++GL
Sbjct: 348 DEAHNLIDTILSIYSTTLTSVNLANALSQLRQYLQRFKSRLKSKHSLWIQQVLSLLQGL 406
>gi|409044127|gb|EKM53609.1| hypothetical protein PHACADRAFT_148290 [Phanerochaete carnosa
HHB-10118-sp]
Length = 859
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 47/73 (64%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
FE+R+D +++ GQ+L + A +VP G+V F SY +L +V+ W G+++ L+ +K +
Sbjct: 621 FESRNDHALLAELGQVLFNFASLVPGGMVVFVPSYGFLHTVMGVWEKSGLLERLRSKKKV 680
Query: 644 FIETQDALDSRSV 656
F E Q++ + +V
Sbjct: 681 FTEPQESAEVETV 693
>gi|340931927|gb|EGS19460.1| hypothetical protein CTHT_0049210 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 918
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 14/85 (16%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWY---------- 629
E F+ R D ++IR G +L++I VVPDGVV FF SY YL+ VVA+W
Sbjct: 637 FEFSFQKRSDPAMIRQLGLVLLNICSVVPDGVVVFFPSYSYLDEVVAAWQAPETQNGPSV 696
Query: 630 ----DQGIIDNLQKRKLLFIETQDA 650
Q + D L +K LF E++
Sbjct: 697 SFQRKQTLWDRLAAKKTLFRESKGG 721
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVF------ETRDDISVIRNY 596
F+ R D ++IR G +L++I VVPDGVV FF SY YL+ V ET++ SV
Sbjct: 641 FQKRSDPAMIRQLGLVLLNICSVVPDGVVVFFPSYSYLDEVVAAWQAPETQNGPSVSFQR 700
Query: 597 GQLLVD 602
Q L D
Sbjct: 701 KQTLWD 706
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I L +G++L +CPY+ +R+AI A++V Y LL + +L ++V+ DEA
Sbjct: 333 IEDLYRVGKDLQVCPYYASREAIPGAEVVTLPYPLLLQKSAREALGIKL-EGNIVIIDEA 391
Query: 772 HNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADS--AKLREEYARLVEGLRD 829
HNI + A+ N+ E L E++ A + + + ++G
Sbjct: 392 HNIMD-----------------AIANVHAAEIRLSELRRAREMLGVYVKRFGKKLKGENR 434
Query: 830 AQSARETDVVLANPVLPDEILQGKTDYGIM 859
A+ VV + + L GK D+GI+
Sbjct: 435 MMVAQVGRVVESLSEWLNTALNGKGDHGIV 464
Score = 46.6 bits (109), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I L +G++L +CPY+ +R+AI A++V Y LL + +L ++V+ DEA
Sbjct: 333 IEDLYRVGKDLQVCPYYASREAIPGAEVVTLPYPLLLQKSAREALGIKL-EGNIVIIDEA 391
Query: 117 HNIDNVCVDSLSVRINRRTIEKA 139
HNI + + + I + +A
Sbjct: 392 HNIMDAIANVHAAEIRLSELRRA 414
>gi|148706380|gb|EDL38327.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase
homolog, S. cerevisiae), isoform CRA_a [Mus musculus]
Length = 942
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDGV----VCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD + +C S LE ++ R+ ++ G++L ++ VVP GV
Sbjct: 678 VVEFSCGHVIPPDNILPLIICSGPSNQQLEFTYQRRELPQMVEETGRILCNLCNVVPGGV 737
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCF SY YL V A W G++ L RK +F E + A
Sbjct: 738 VCFLPSYEYLRQVHAHWDKTGLLTRLSVRKKIFQEPKRA 776
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 15/136 (11%)
Query: 8 KIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFY--EKFDAVGREAPLAPGVYS 56
++++ RC + S R+++ GE+ P C FY E+ + + E L V
Sbjct: 313 QLMNDRCVDMQRSK-REKNGTGEDKPKRKRQKIQTSCPFYNHEQMELLRDEILLE--VKD 369
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
+ +L +G+E CPY+ +R AI A++VV Y LL L + VV+ DEA
Sbjct: 370 MEQLVALGKEARACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRL-QGQVVIIDEA 428
Query: 117 HNIDNVCVDSLSVRIN 132
HN+ + + S +N
Sbjct: 429 HNLIDTITNIHSTEVN 444
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 15/136 (11%)
Query: 663 KIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFY--EKFDAVGREAPLAPGVYS 711
++++ RC + S R+++ GE+ P C FY E+ + + E L V
Sbjct: 313 QLMNDRCVDMQRSK-REKNGTGEDKPKRKRQKIQTSCPFYNHEQMELLRDEILLE--VKD 369
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
+ +L +G+E CPY+ +R AI A++VV Y LL L + VV+ DEA
Sbjct: 370 MEQLVALGKEARACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRL-QGQVVIIDEA 428
Query: 772 HNIDNVCVDSLSVRIN 787
HN+ + + S +N
Sbjct: 429 HNLIDTITNIHSTEVN 444
>gi|328853665|gb|EGG02802.1| hypothetical protein MELLADRAFT_38383 [Melampsora larici-populina
98AG31]
Length = 791
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 565 VVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 624
VVP G S LE F +R D ++ + GQ + +I VV DG+VCFF SY L+S+
Sbjct: 551 VVPHG-----PSKTPLELKFASRGDNKLLDDLGQSISNICNVVKDGIVCFFPSYAILDSL 605
Query: 625 VASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKE 659
W G++ L+ RK +F E + + D + K+
Sbjct: 606 RDRWKTSGLLSRLENRKKVFNEPKSSADVETTLKD 640
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V I +L +G+E G+CPY+ AR+A+ A+IV Y+ LL N + L +V++
Sbjct: 246 VRDIEELASLGKERGVCPYYGARKALRQAQIVTLPYNLLLQKSSRNALGISLT-DNVIIV 304
Query: 114 DEAHN-IDNV-CVDSLSVRIN 132
DEAHN IDNV + S S+ N
Sbjct: 305 DEAHNLIDNVLAIHSTSISSN 325
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V I +L +G+E G+CPY+ AR+A+ A+IV Y+ LL N + L +V++
Sbjct: 246 VRDIEELASLGKERGVCPYYGARKALRQAQIVTLPYNLLLQKSSRNALGISLT-DNVIIV 304
Query: 769 DEAHN-IDNV-CVDSLSVRIN 787
DEAHN IDNV + S S+ N
Sbjct: 305 DEAHNLIDNVLAIHSTSISSN 325
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 542 EFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
+F +R D ++ + GQ + +I VV DG+VCFF SY L+S+
Sbjct: 564 KFASRGDNKLLDDLGQSISNICNVVKDGIVCFFPSYAILDSL 605
>gi|435850299|ref|YP_007311885.1| DNA helicase, Rad3 [Methanomethylovorans hollandica DSM 15978]
gi|433660929|gb|AGB48355.1| DNA helicase, Rad3 [Methanomethylovorans hollandica DSM 15978]
Length = 725
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 88/174 (50%), Gaps = 11/174 (6%)
Query: 691 DFYE--KFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
D YE +F++ L V + ++ E + G+C Y L ++ + HA +++ ++H++L
Sbjct: 180 DLYEVLRFESEVFRQWLFADVRTPEEINEYATKKGMCGYELLKRELKHADLIICNFHHVL 239
Query: 749 DPKIANVVSKELARSS---VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 805
+I + L + +V+FDEAHN+++ S+ I TIEKA+ I+ + +
Sbjct: 240 SAEIFATLLTWLDKEPQDVIVIFDEAHNLESAARSHSSMTITEHTIEKAIAEIEANQDQM 299
Query: 806 KEMKEADSAKL-----REEY-ARLVEGLRDAQSARETDVVLANPVLPDEILQGK 853
E + D K+ RE Y R G R+ D+ +++P +++++G+
Sbjct: 300 PESRAFDLFKMLNEIIRETYNNRFKFGERERVGRIWYDMRISDPYERNDMVRGR 353
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 5/137 (3%)
Query: 36 DFYE--KFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
D YE +F++ L V + ++ E + G+C Y L ++ + HA +++ ++H++L
Sbjct: 180 DLYEVLRFESEVFRQWLFADVRTPEEINEYATKKGMCGYELLKRELKHADLIICNFHHVL 239
Query: 94 DPKIANVVSKELARSS---VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 150
+I + L + +V+FDEAHN+++ S+ I TIEKA+ I+ + +
Sbjct: 240 SAEIFATLLTWLDKEPQDVIVIFDEAHNLESAARSHSSMTITEHTIEKAIAEIEANQDQM 299
Query: 151 KEMKEADSAKLREEYAR 167
E + D K+ E R
Sbjct: 300 PESRAFDLFKMLNEIIR 316
>gi|449486421|ref|XP_002193824.2| PREDICTED: regulator of telomere elongation helicase 1 [Taeniopygia
guttata]
Length = 1107
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
C FY + E L + I L + G + CPY+L+R A I+ Y+YLL
Sbjct: 171 ACHFYNNVEEKSTEKELIESIMDIEDLVKNGNKHRACPYYLSRSLKQQADIIFMPYNYLL 230
Query: 94 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 128
D K + +L + +VV+ DEAHN++ +C +S S
Sbjct: 231 DSKSRKAHNLDL-KGTVVILDEAHNVEKLCEESSS 264
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
C FY + E L + I L + G + CPY+L+R A I+ Y+YLL
Sbjct: 171 ACHFYNNVEEKSTEKELIESIMDIEDLVKNGNKHRACPYYLSRSLKQQADIIFMPYNYLL 230
Query: 749 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 783
D K + +L + +VV+ DEAHN++ +C +S S
Sbjct: 231 DSKSRKAHNLDL-KGTVVILDEAHNVEKLCEESSS 264
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY--- 482
+ ++ + V FP++ YP Q AYM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 ITLNGITVDFPFQ-PYPCQEAYMAKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWREH 62
Query: 483 -------------MNAHPL-----------------------DVTKLLYCSRTVPEIEKV 506
MN L D+ K++Y SRT ++ +V
Sbjct: 63 FKDTISARKIAQRMNGVELFPDRPVSSWGTAATDGDVPTYYTDIPKIIYASRTHSQLTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCI+ E + ++
Sbjct: 123 INELK---------NTVYRPKICVLGSREQLCINPEVKRQE 154
Score = 43.5 bits (101), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
QL V I PDG V L S +E R + + G+ + ++ VVP G++ FF
Sbjct: 511 QLWVGIIPKGPDGTV--------LTSTYERRFSEDYLSSLGKTIGNLVRVVPHGMLVFFP 562
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
SY ++ + W + +++ K +F+E ++
Sbjct: 563 SYPVMDKSLEYWREHDFAKRIEEVKPMFVEPRN 595
>gi|449274178|gb|EMC83461.1| Regulator of telomere elongation helicase 1, partial [Columba
livia]
Length = 1124
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
C FY + E L + I L + G + CPY+L+R A I+ Y+YLL
Sbjct: 171 ACHFYNNVEEKSTEKELIESIMDIEDLVKNGNKHRACPYYLSRSLKQQADIIFMPYNYLL 230
Query: 94 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 128
D K + +L + +VV+ DEAHN++ +C +S S
Sbjct: 231 DSKSRRAHNLDL-KGTVVILDEAHNVEKLCEESSS 264
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
C FY + E L + I L + G + CPY+L+R A I+ Y+YLL
Sbjct: 171 ACHFYNNVEEKSTEKELIESIMDIEDLVKNGNKHRACPYYLSRSLKQQADIIFMPYNYLL 230
Query: 749 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 783
D K + +L + +VV+ DEAHN++ +C +S S
Sbjct: 231 DSKSRRAHNLDL-KGTVVILDEAHNVEKLCEESSS 264
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 49/161 (30%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY--- 482
+ ++ + V FP++ YP Q AYM ++ + L K + +LE P+GTGKT LL +A+
Sbjct: 4 ITLNGIAVDFPFQ-PYPCQEAYMAKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWREH 62
Query: 483 -------------MNAHPL-----------------------DVTKLLYCSRTVPEIEKV 506
MN L D+ K++Y SRT ++ +V
Sbjct: 63 FKDTISARKIAQRMNGMELFPERPMSSWGNAATDADIPAYYTDIPKIIYASRTHSQLTQV 122
Query: 507 VEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
+ EL N VL SR+ LCIH E + ++
Sbjct: 123 INELK---------NTVYRPKICVLGSREQLCIHPEVKRQE 154
Score = 43.5 bits (101), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
QL V I PDG V L S +E R + + G+ + ++ VVP G++ FF
Sbjct: 510 QLWVGIIPKGPDGTV--------LTSTYERRFSGDYLSSLGKTIGNLVRVVPHGLLVFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
SY ++ + W + +++ K +F+E ++
Sbjct: 562 SYPVMDKSLEYWREHDFARRIEEVKPMFVEPRN 594
>gi|328719600|ref|XP_001948918.2| PREDICTED: regulator of telomere elongation helicase 1 homolog
[Acyrthosiphon pisum]
Length = 946
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
C FY + ++A + G+ I L G++ CPY+ +R+ I+ Y+Y++
Sbjct: 169 TCQFYNNVELKSKDAFVENGIADIEDLVNKGKKFNCCPYYGSRELQKDVDILFTPYNYII 228
Query: 94 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTI 136
DP+ + + V++ DE HN++ +C +S SV I+ I
Sbjct: 229 DPRTRKAQDIQFS-DDVIILDEGHNVEKMCEESCSVDISSTDI 270
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
C FY + ++A + G+ I L G++ CPY+ +R+ I+ Y+Y++
Sbjct: 169 TCQFYNNVELKSKDAFVENGIADIEDLVNKGKKFNCCPYYGSRELQKDVDILFTPYNYII 228
Query: 749 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTI 791
DP+ + + V++ DE HN++ +C +S SV I+ I
Sbjct: 229 DPRTRKAQDIQFS-DDVIILDEGHNVEKMCEESCSVDISSTDI 270
Score = 47.8 bits (112), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
+ +R++ + + GQ LV+ + ++P G + FF SY +L+ V W I ++ K K +
Sbjct: 518 YTSRNNSDFLTSLGQTLVNFSRIIPGGTLVFFPSYPFLDQCVNHWQGCNIWASITKNKSI 577
Query: 644 FIE--TQDALDS 653
F+E +D L+S
Sbjct: 578 FVEPKNKDVLNS 589
>gi|401415594|ref|XP_003872292.1| putative helicase [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322488516|emb|CBZ23762.1| putative helicase [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 953
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRE---LGLCPYFLARQAIIHAKIVVYSYHY 91
C F+ + G A L P ++ ++++ RE G CPYF R A A +V+ Y+Y
Sbjct: 153 CRFFRGLQSAGAGASLLPPACAVHDMEDLMREGSRSGFCPYFHERDAARDADVVLMPYNY 212
Query: 92 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 126
+LDP + + ELA + +++ DEAHN+ +V S
Sbjct: 213 ILDPSLHKQLPFELA-NCILIVDEAHNLPSVLSSS 246
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRE---LGLCPYFLARQAIIHAKIVVYSYHY 746
C F+ + G A L P ++ ++++ RE G CPYF R A A +V+ Y+Y
Sbjct: 153 CRFFRGLQSAGAGASLLPPACAVHDMEDLMREGSRSGFCPYFHERDAARDADVVLMPYNY 212
Query: 747 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 781
+LDP + + ELA + +++ DEAHN+ +V S
Sbjct: 213 ILDPSLHKQLPFELA-NCILIVDEAHNLPSVLSSS 246
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 25/132 (18%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA-- 485
++ + V FP++ YP Q +M + K L + LLE P+GTGKT LL + ++ A
Sbjct: 7 VNGITVSFPFD-PYPAQVEFMRSVVKCLQHGFNGLLESPTGTGKTLCLLCSTLGWLAARS 65
Query: 486 ------HPLD---------VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLV 530
HP D K++YCSRT ++ +VV EL R + + M +
Sbjct: 66 QGAVLRHPSDQDQKGRGKYSHKVVYCSRTHAQLAQVVRELKR-----TSYAQCFTMA--I 118
Query: 531 LSSRKNLCIHSE 542
L SR+++C++ E
Sbjct: 119 LGSREHMCLNKE 130
>gi|448712772|ref|ZP_21701801.1| DEAD/DEAH box helicase [Halobiforma nitratireducens JCM 10879]
gi|445790198|gb|EMA40867.1| DEAD/DEAH box helicase [Halobiforma nitratireducens JCM 10879]
Length = 725
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 103/251 (41%), Gaps = 47/251 (18%)
Query: 635 DNLQKR-KLLFIETQDALDSRSVSKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPVCDF 692
D L++R + L E+QD DG D R + S+ DR + E VCD+
Sbjct: 131 DQLERRQRELLAESQDG----------DGSAADARSAVMDELESIEDRLEDLEEQNVCDY 180
Query: 693 YEKFDAVGRE---APLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
Y + A L V ++ E LC Y L ++ I +VV +YH+LLD
Sbjct: 181 YRNNLTENTDDFFAWLFEDVRRPEEIYEYAESQELCGYELLKEGIEGVDLVVCNYHHLLD 240
Query: 750 PKIANVVSKELARSS---VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLK 806
I + L R + VFDEAHN+++ + + + RT E A L
Sbjct: 241 STIREQFFRWLGRDPEDVIAVFDEAHNVEDAAREHATRTCSERTFESA----------LD 290
Query: 807 EMKEADSAKLREE-------YARLVE--------GLRDAQSARETDVVLANPVLPD---- 847
E++E+D + ++ + LVE G R+A DV +AN D
Sbjct: 291 ELEESDDPRAQDAGNVLSAFHRALVETYEDSFGFGEREAIGENWADVPIANEDRRDDLTL 350
Query: 848 EILQGKTDYGI 858
E LQ + GI
Sbjct: 351 EFLQRYSGRGI 361
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 93/220 (42%), Gaps = 32/220 (14%)
Query: 2 SKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPVCDFYEKFDAVGRE---APLAPGVYSI 57
S++ DG D R + S+ DR + E VCD+Y + A L V
Sbjct: 144 SQDGDGSAADARSAVMDELESIEDRLEDLEEQNVCDYYRNNLTENTDDFFAWLFEDVRRP 203
Query: 58 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFD 114
++ E LC Y L ++ I +VV +YH+LLD I + L R + VFD
Sbjct: 204 EEIYEYAESQELCGYELLKEGIEGVDLVVCNYHHLLDSTIREQFFRWLGRDPEDVIAVFD 263
Query: 115 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREE-------YAR 167
EAHN+++ + + + RT E A L E++E+D + ++ +
Sbjct: 264 EAHNVEDAAREHATRTCSERTFESA----------LDELEESDDPRAQDAGNVLSAFHRA 313
Query: 168 LVE--------GLRDAQSARETDVVLANPVLPDEILQEVV 199
LVE G R+A DV +AN D++ E +
Sbjct: 314 LVETYEDSFGFGEREAIGENWADVPIANEDRRDDLTLEFL 353
>gi|432092892|gb|ELK25255.1| Fanconi anemia group J protein [Myotis davidii]
Length = 1114
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 29 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G+N C FY + + + I +L +G++L CPY+ AR+ I A
Sbjct: 233 GKNGKSCYFYHGVHKISGQHTFQTLQGMCKAWDIEELVSLGKKLKACPYYTARELIEDAD 292
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S I
Sbjct: 293 IIFCPYNYLLDAQIRESMDINL-KEQVVILDEAHNIEDCARESASYSI 339
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 684 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G+N C FY + + + I +L +G++L CPY+ AR+ I A
Sbjct: 233 GKNGKSCYFYHGVHKISGQHTFQTLQGMCKAWDIEELVSLGKKLKACPYYTARELIEDAD 292
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S I
Sbjct: 293 IIFCPYNYLLDAQIRESMDINL-KEQVVILDEAHNIEDCARESASYSI 339
Score = 43.1 bits (100), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 554 NYGQLLVDIACVVPDG-VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVV 612
N Q+ V P G +C ++ + E+ FE +D++ G LL+ + +V G++
Sbjct: 510 NNSQVWVGTIGSGPKGRNLC--ATFQHTET-FEFQDEV------GALLLSVCQIVGQGIL 560
Query: 613 CFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
CF SY LE + W G+ NL+ K + +E Q
Sbjct: 561 CFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQ 596
>gi|344252419|gb|EGW08523.1| putative ATP-dependent RNA helicase DDX11 [Cricetulus griseus]
Length = 196
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDGV----VCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD + +C S LE ++ RD ++ G++L ++ VVP GV
Sbjct: 24 VVEFSCGHVIPPDNILPLIICSGPSNQQLEFTYQRRDLPQMMEETGRVLCNLCNVVPGGV 83
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY YL + A W G++ L +K LF E + A
Sbjct: 84 VCFFPSYEYLRQIHAHWDKTGLLARLSVKKKLFQEPKRA 122
Score = 43.1 bits (100), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRD 588
++ S N + ++ RD ++ G++L ++ VVP GVVCFF SY YL + D
Sbjct: 42 IICSGPSNQQLEFTYQRRDLPQMMEETGRVLCNLCNVVPGGVVCFFPSYEYLRQIHAHWD 101
Query: 589 DISVI 593
++
Sbjct: 102 KTGLL 106
>gi|449448190|ref|XP_004141849.1| PREDICTED: regulator of telomere elongation helicase 1-like
[Cucumis sativus]
Length = 1054
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 7 GKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAP-LAPGVYSITKLKEMGR 65
G+ + C SL S + RH C Y + +E P L I L ++G+
Sbjct: 143 GRTQNNACRSLCRKSGK-RH--------CKHYNRVSGYVKENPHLGDEPIDIEDLVKIGK 193
Query: 66 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVD 125
G CPY+++R+ I+ Y+YL+D + E ++SV++FDEAHN++++C D
Sbjct: 194 SFGPCPYYVSRELHKAVDIMFAPYNYLIDRGYRKSLVLEW-KNSVLIFDEAHNLESICAD 252
Query: 126 SLS 128
+ S
Sbjct: 253 AAS 255
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 662 GKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAP-LAPGVYSITKLKEMGR 720
G+ + C SL S + RH C Y + +E P L I L ++G+
Sbjct: 143 GRTQNNACRSLCRKSGK-RH--------CKHYNRVSGYVKENPHLGDEPIDIEDLVKIGK 193
Query: 721 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVD 780
G CPY+++R+ I+ Y+YL+D + E ++SV++FDEAHN++++C D
Sbjct: 194 SFGPCPYYVSRELHKAVDIMFAPYNYLIDRGYRKSLVLEW-KNSVLIFDEAHNLESICAD 252
Query: 781 SLS 783
+ S
Sbjct: 253 AAS 255
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 51/161 (31%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA-- 485
I + V FP++ Y Q YM ++ ++L K + LLE P+GTGKT LL +A+ +
Sbjct: 6 IRGIDVDFPFD-AYDCQLVYMEKVIQSLQEKCNALLESPTGTGKTLCLLCATLAWRKSLG 64
Query: 486 -----------------------------HPLDVTKLLYCSRTVPEIEKVVEELARLFDY 516
HP ++Y +RT ++ +V++EL + Y
Sbjct: 65 EFSSGRSVSNSQNIEGDPNVLSSQSTSPKHPT----IVYTTRTHSQLRQVIQELKKT-SY 119
Query: 517 YIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQ 557
K +VL SR+ LCIH +D+S++R Q
Sbjct: 120 RPKM--------VVLGSREQLCIH------EDVSLLRGRTQ 146
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ + V P G C F S + R+ + + G +V+ A +VPDG++ FF
Sbjct: 472 QIWAGVVSVGPSG--CSFNSSYW------NRESEAYKLDLGNAIVNFARIVPDGLLVFFP 523
Query: 617 SYLYLESVVASWYDQGI 633
SY +L+ ++ W +Q +
Sbjct: 524 SYYFLDQCISCWKNQSL 540
>gi|297715610|ref|XP_002834155.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein
[Pongo abelii]
Length = 1248
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 29 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G+N C FY + + L + I +L +G+++ CPY+ AR+ I A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKIKACPYYTARELIQDAD 363
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 136
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +R R +
Sbjct: 364 IIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422
Query: 137 EKAVGN 142
+ V N
Sbjct: 423 DSMVNN 428
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 684 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G+N C FY + + L + I +L +G+++ CPY+ AR+ I A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKIKACPYYTARELIQDAD 363
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 791
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +R R +
Sbjct: 364 IIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422
Query: 792 EKAVGN 797
+ V N
Sbjct: 423 DSMVNN 428
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY---MN 484
I + ++FPY+ YP Q A M + + L++K HCLLE P+G+GK+ +LL +A+ ++
Sbjct: 10 IGGVKIYFPYK-AYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQSLS 68
Query: 485 AHPLD 489
P D
Sbjct: 69 GKPAD 73
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 18/107 (16%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKL 642
FE +D++ G LL+ + V G++CF SY LE + W G+ NL+ K
Sbjct: 669 TFEFQDEV------GALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKT 722
Query: 643 LFIETQDA------------LDSRSVSKERDGKIVDGRCHSLTSSSV 677
+ +E Q D+ E+DG ++ C S +
Sbjct: 723 VIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGL 769
>gi|338711555|ref|XP_001917874.2| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J
protein-like, partial [Equus caballus]
Length = 1219
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 29 GENIPVCDFYEKFDAVGREAPL-APGV---YSITKLKEMGRELGLCPYFLARQAIIHAKI 84
G+N C FY + + L G+ + I +L +G++L CPY+ AR+ I A I
Sbjct: 303 GKNGKSCYFYHGIHKISDQHKLQTEGISKAWDIEELVTLGKKLKACPYYTARELIEDADI 362
Query: 85 VVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
V Y+YLLD +I + L + +V+ DEAHNI + +S S I
Sbjct: 363 VFCPYNYLLDAQIRESMDINL-KEQIVILDEAHNIVDCARESASYSI 408
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 684 GENIPVCDFYEKFDAVGREAPL-APGV---YSITKLKEMGRELGLCPYFLARQAIIHAKI 739
G+N C FY + + L G+ + I +L +G++L CPY+ AR+ I A I
Sbjct: 303 GKNGKSCYFYHGIHKISDQHKLQTEGISKAWDIEELVTLGKKLKACPYYTARELIEDADI 362
Query: 740 VVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
V Y+YLLD +I + L + +V+ DEAHNI + +S S I
Sbjct: 363 VFCPYNYLLDAQIRESMDINL-KEQIVILDEAHNIVDCARESASYSI 408
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY---MN 484
I + + FPY+ YP Q A M + + L++K HCLLE P+G+GK+ +LL +A+ ++
Sbjct: 9 IGGVKINFPYK-AYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCSALAWQQSLS 67
Query: 485 AHPLD 489
P+D
Sbjct: 68 GKPVD 72
Score = 41.2 bits (95), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKL 642
FE +D++ G LL+ + V G++CF SY LE + W G+ NL+ K
Sbjct: 666 TFEFQDEV------GALLLSVCQTVSQGILCFLPSYKLLEKLKERWLYTGLWHNLELVKT 719
Query: 643 LFIETQDA 650
+ +E Q
Sbjct: 720 VIVEPQGG 727
>gi|317151049|ref|XP_001824411.2| ATP-dependent RNA helicase CHL1 [Aspergillus oryzae RIB40]
Length = 858
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 108/501 (21%), Positives = 195/501 (38%), Gaps = 90/501 (17%)
Query: 441 YPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTK-------- 492
Y Q +M L ++ + E P+GTGK+ S++ + ++ H V +
Sbjct: 15 YDIQLQFMRALYSCIEKGKVAVFESPTGTGKSLSIICGSLTWLRDHKRKVFQETVNNTTY 74
Query: 493 --------LLYC----SRTVPEIEKVVEE-LARLFDYYIKHNEEINMTGLVLSS----RK 535
L Y SR V E K ++E LA+ +H EE L SS R+
Sbjct: 75 DDGEPEWMLEYAKRESSRAVSEKRKELQERLAK-----ARHKEEKQKIALENSSGPRKRQ 129
Query: 536 NLCI---HSEFETRDDISVI--------RNYGQLLVDIACVVPDGVVCFFTSYLYLESVF 584
+ S+ +T +D ++ ++ + D + + G + + + S
Sbjct: 130 KFDVPSRASDAQTDNDFALDDYDSEGEEKSSSRKRTDYSSGLSTGTLELLKRFQHKSSAH 189
Query: 585 ETRDDISVIRNYGQLLVDIA-CVVPDGVVCFFTSYLY---LESVVASWYDQGIID----- 635
+D+ +YG + I C + F S L + S + + +G+ D
Sbjct: 190 PRQDE-----DYGDEDIKILYCSRTHSQLTQFASELRRVNMPSSIPKDFSEGVADTDGLQ 244
Query: 636 ------NLQKRKLLFIETQ-------DALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHK 682
+L RK L I + A+ R + ++ G + RC L S+
Sbjct: 245 EGVRHLSLGSRKNLCINPRVSSLDNVTAISERCLDMQQPGVAAEQRCPFLPSNE------ 298
Query: 683 AGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
V F R+ LA V I + ++G+++G+CPY+ +R H++IV
Sbjct: 299 --NEAQVLQF--------RDHVLAT-VKDIEDIGKLGKDIGICPYYASRSVTKHSEIVTL 347
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802
Y LL + + + + VVV DEAHN+ + + SV I ++ ++ + T
Sbjct: 348 PYPLLLQRSARDALDLSI-KGHVVVIDEAHNLMDAISNIHSVTITLSELQTSLFQLTTYA 406
Query: 803 GTLKEMKEADSAKLREEYARLVEGLRDA-QSARETDVVLANPVLPDEILQGKTDYGIMIF 861
K + + + RLV + D ++ ET PV P +++ GK G+
Sbjct: 407 RKFKTRLKGKNRNYIAQVIRLVTSITDHLKTILETSQAPEGPVQPSDLMSGK---GVDQI 463
Query: 862 ADKRFARSDKRSKLPKWIQEY 882
+ R + SKL + + Y
Sbjct: 464 NPYKLCRYLRESKLARKVDGY 484
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 2/143 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V I + ++G+++G+CPY+ +R H++IV Y LL + + + + VVV
Sbjct: 314 VKDIEDIGKLGKDIGICPYYASRSVTKHSEIVTLPYPLLLQRSARDALDLSI-KGHVVVI 372
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 173
DEAHN+ + + SV I ++ ++ + T K + + + RLV +
Sbjct: 373 DEAHNLMDAISNIHSVTITLSELQTSLFQLTTYARKFKTRLKGKNRNYIAQVIRLVTSIT 432
Query: 174 DA-QSARETDVVLANPVLPDEIL 195
D ++ ET PV P +++
Sbjct: 433 DHLKTILETSQAPEGPVQPSDLM 455
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW-------YDQGIID 635
FETRD +I + G+ + + V+PDGVV FF SY YL V++ W ++ + D
Sbjct: 613 TFETRDSERMIVDLGRTMAALCQVIPDGVVAFFPSYDYLSQVLSIWKRTLAGEKNRTVYD 672
Query: 636 NLQKRKLLFIETQD 649
++ +K + E++D
Sbjct: 673 LIEGKKTILHESRD 686
Score = 43.9 bits (102), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVF 584
FETRD +I + G+ + + V+PDGVV FF SY YL V
Sbjct: 614 FETRDSERMIVDLGRTMAALCQVIPDGVVAFFPSYDYLSQVL 655
>gi|51491862|ref|NP_001003919.1| probable ATP-dependent RNA helicase DDX11 [Mus musculus]
gi|81884425|sp|Q6AXC6.1|DDX11_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX11; AltName:
Full=DEAD/H box protein 11
gi|50926041|gb|AAH79656.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase
homolog, S. cerevisiae) [Mus musculus]
Length = 880
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDGV----VCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD + +C S LE ++ R+ ++ G++L ++ VVP GV
Sbjct: 616 VVEFSCGHVIPPDNILPLIICSGPSNQQLEFTYQRRELPQMVEETGRILCNLCNVVPGGV 675
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCF SY YL V A W G++ L RK +F E + A
Sbjct: 676 VCFLPSYEYLRQVHAHWDKTGLLTRLSVRKKIFQEPKRA 714
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 15/136 (11%)
Query: 8 KIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFY--EKFDAVGREAPLAPGVYS 56
++++ RC + S R+++ GE+ P C FY E+ + + E L V
Sbjct: 251 QLMNDRCVDMQRSK-REKNGTGEDKPKRKRQKIQTSCPFYNHEQMELLRDEILLE--VKD 307
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
+ +L +G+E CPY+ +R AI A++VV Y LL L + VV+ DEA
Sbjct: 308 MEQLVALGKEARACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRL-QGQVVIIDEA 366
Query: 117 HNIDNVCVDSLSVRIN 132
HN+ + + S +N
Sbjct: 367 HNLIDTITNIHSTEVN 382
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 15/136 (11%)
Query: 663 KIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFY--EKFDAVGREAPLAPGVYS 711
++++ RC + S R+++ GE+ P C FY E+ + + E L V
Sbjct: 251 QLMNDRCVDMQRSK-REKNGTGEDKPKRKRQKIQTSCPFYNHEQMELLRDEILLE--VKD 307
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
+ +L +G+E CPY+ +R AI A++VV Y LL L + VV+ DEA
Sbjct: 308 MEQLVALGKEARACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRL-QGQVVIIDEA 366
Query: 772 HNIDNVCVDSLSVRIN 787
HN+ + + S +N
Sbjct: 367 HNLIDTITNIHSTEVN 382
>gi|449529467|ref|XP_004171721.1| PREDICTED: regulator of telomere elongation helicase 1-like,
partial [Cucumis sativus]
Length = 695
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 7 GKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAP-LAPGVYSITKLKEMGR 65
G+ + C SL S + RH C Y + +E P L I L ++G+
Sbjct: 143 GRTQNNACRSLCRKSGK-RH--------CKHYNRVSGYVKENPHLGDEPIDIEDLVKIGK 193
Query: 66 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVD 125
G CPY+++R+ I+ Y+YL+D + E ++SV++FDEAHN++++C D
Sbjct: 194 SFGPCPYYVSRELHKAVDIMFAPYNYLIDRGYRKSLVLEW-KNSVLIFDEAHNLESICAD 252
Query: 126 SLS 128
+ S
Sbjct: 253 AAS 255
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 662 GKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAP-LAPGVYSITKLKEMGR 720
G+ + C SL S + RH C Y + +E P L I L ++G+
Sbjct: 143 GRTQNNACRSLCRKSGK-RH--------CKHYNRVSGYVKENPHLGDEPIDIEDLVKIGK 193
Query: 721 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVD 780
G CPY+++R+ I+ Y+YL+D + E ++SV++FDEAHN++++C D
Sbjct: 194 SFGPCPYYVSRELHKAVDIMFAPYNYLIDRGYRKSLVLEW-KNSVLIFDEAHNLESICAD 252
Query: 781 SLS 783
+ S
Sbjct: 253 AAS 255
Score = 47.0 bits (110), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 51/161 (31%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA-- 485
I + V FP++ Y Q YM ++ ++L K + LLE P+GTGKT LL +A+ +
Sbjct: 6 IRGIDVDFPFD-AYDCQLVYMEKVIQSLQEKCNALLESPTGTGKTLCLLCATLAWRKSLG 64
Query: 486 -----------------------------HPLDVTKLLYCSRTVPEIEKVVEELARLFDY 516
HP ++Y +RT ++ +V++EL + Y
Sbjct: 65 EFSSGRSVSNSQNIEGDPNVLSSQSTSPKHP----TIVYTTRTHSQLRQVIQELKKT-SY 119
Query: 517 YIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQ 557
K +VL SR+ LCIH +D+S++R Q
Sbjct: 120 RPKM--------VVLGSREQLCIH------EDVSLLRGRTQ 146
Score = 45.1 bits (105), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 569 GVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW 628
GVV S S + R+ + + G +V+ A +VPDG++ FF SY +L+ ++ W
Sbjct: 476 GVVSVGPSGCSFNSSYWNRESEAYKLDLGNAIVNFARIVPDGLLVFFPSYYFLDQCISCW 535
Query: 629 YDQGI 633
+Q +
Sbjct: 536 KNQSL 540
>gi|449664763|ref|XP_002167953.2| PREDICTED: regulator of telomere elongation helicase 1-like [Hydra
magnipapillata]
Length = 1225
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 10/145 (6%)
Query: 35 CDFYEKFDAVGREA-PLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
C FY + + + PG+ I L +G E CPY++AR+ A ++ Y+Y+L
Sbjct: 174 CFFYNNLEERSEDKDKVPPGMLDIEDLVSIGTEKKFCPYYMARELRKEADLLFMPYNYVL 233
Query: 94 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN--------IQT 145
D K NV +L +++V+ DEAHN+++ C ++ S ++ + + + +Q
Sbjct: 234 DFKARNVHGVDLT-NTIVLLDEAHNLESHCENNASFELSSFDLASCIEDSQQCIEILLQK 292
Query: 146 LEGTLKEMKEADSAKLREEYARLVE 170
E L + EA L E A L++
Sbjct: 293 EEEGLTSLDEASIGDLTTEDASLMK 317
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 10/145 (6%)
Query: 690 CDFYEKFDAVGREA-PLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
C FY + + + PG+ I L +G E CPY++AR+ A ++ Y+Y+L
Sbjct: 174 CFFYNNLEERSEDKDKVPPGMLDIEDLVSIGTEKKFCPYYMARELRKEADLLFMPYNYVL 233
Query: 749 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN--------IQT 800
D K NV +L +++V+ DEAHN+++ C ++ S ++ + + + +Q
Sbjct: 234 DFKARNVHGVDLT-NTIVLLDEAHNLESHCENNASFELSSFDLASCIEDSQQCIEILLQK 292
Query: 801 LEGTLKEMKEADSAKLREEYARLVE 825
E L + EA L E A L++
Sbjct: 293 EEEGLTSLDEASIGDLTTEDASLMK 317
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V I PDG L S +++R + G +V+++ ++PDG++ FF
Sbjct: 536 QVFVGILPQGPDGK--------KLNSSYQSRSTSEYQVSLGNTIVNLSRIIPDGLLVFFP 587
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQDAL 651
SY ++ V+A W + GI + + K L++E + L
Sbjct: 588 SYPVMDMVLAKWQECGIWNRIATNKGLYVEGRGKL 622
>gi|46126959|ref|XP_388033.1| hypothetical protein FG07857.1 [Gibberella zeae PH-1]
Length = 863
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 14/103 (13%)
Query: 562 IAC--VVPDGVVCFFT------SYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVC 613
++C V+P +C +T E F+ R D +I G ++++ +VPDGVV
Sbjct: 586 LSCGHVIPPENLCVWTLASSRPGAPPFEFSFQKRGDPEMITQLGLAILNLCSLVPDGVVI 645
Query: 614 FFTSYLYLESVVASWYD------QGIIDNLQKRKLLFIETQDA 650
FF SY YL+ VVA W Q + D L RK LF ET+ A
Sbjct: 646 FFPSYGYLDEVVAVWQKSQGASTQSVWDRLGTRKALFKETRGA 688
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 24/184 (13%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVG-----REAPLAPGV 709
SVS+ + ++ RC L + K+G+ C F K D + R++ LA +
Sbjct: 265 SVSRLGSVQAINDRCSEL------QQPKSGQK---CPFVPKEDLLSQTHQFRDSALAT-L 314
Query: 710 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 769
I L ++G+ L +CPY+ +R A+ A+I+ Y LL + + +L S+V+ D
Sbjct: 315 PDIEDLHQLGKSLAVCPYYASRTALPGAEIITLPYPLLLQKSARDALGVKL-EGSIVIVD 373
Query: 770 EAHNIDNVCVDSLSVRINRRTIEKAVGN----IQTLEGTLKEMKEADSAKLREEYARLVE 825
EAHNI + + + I + + G ++ LK + + ++ AR+++
Sbjct: 374 EAHNIMDAVANVHAAEIKLSDLRRGRGMLGVYVKRFGKKLKGVNRVNVGRV----ARVID 429
Query: 826 GLRD 829
GL +
Sbjct: 430 GLSE 433
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 82/176 (46%), Gaps = 24/176 (13%)
Query: 8 KIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVG-----REAPLAPGVYSITKLKE 62
+ ++ RC L + K+G+ C F K D + R++ LA + I L +
Sbjct: 273 QAINDRCSEL------QQPKSGQK---CPFVPKEDLLSQTHQFRDSALAT-LPDIEDLHQ 322
Query: 63 MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNV 122
+G+ L +CPY+ +R A+ A+I+ Y LL + + +L S+V+ DEAHNI +
Sbjct: 323 LGKSLAVCPYYASRTALPGAEIITLPYPLLLQKSARDALGVKL-EGSIVIVDEAHNIMDA 381
Query: 123 CVDSLSVRINRRTIEKAVGN----IQTLEGTLKEMKEADSAKLREEYARLVEGLRD 174
+ + I + + G ++ LK + + ++ AR+++GL +
Sbjct: 382 VANVHAAEIKLSDLRRGRGMLGVYVKRFGKKLKGVNRVNVGRV----ARVIDGLSE 433
Score = 42.0 bits (97), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
F+ R D +I G ++++ +VPDGVV FF SY YL+ V
Sbjct: 616 FQKRGDPEMITQLGLAILNLCSLVPDGVVIFFPSYGYLDEV 656
>gi|407420088|gb|EKF38458.1| helicase-like protein, putative [Trypanosoma cruzi marinkellei]
Length = 956
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 35 CDFYEKFDAVGREA---PLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
C+ + +G A PL G V+ + L G CPY+ R+ + A +
Sbjct: 241 CEAVCNYGILGSRAISHPLHQGRLEKVWDMEDLVAEGVATQSCPYYATRELVFFAHVNFA 300
Query: 88 SYHYLLDPKIANVVSKE--LARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 145
+Y YLLDP I + E L S+++FDEAHN+ +VC D+LS+ + V I+
Sbjct: 301 TYQYLLDPLIRHECKMEAALKNHSIIIFDEAHNVPSVCQDALSLETTLDNLLLVVSEIEP 360
Query: 146 L 146
L
Sbjct: 361 L 361
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 690 CDFYEKFDAVGREA---PLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
C+ + +G A PL G V+ + L G CPY+ R+ + A +
Sbjct: 241 CEAVCNYGILGSRAISHPLHQGRLEKVWDMEDLVAEGVATQSCPYYATRELVFFAHVNFA 300
Query: 743 SYHYLLDPKIANVVSKE--LARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 800
+Y YLLDP I + E L S+++FDEAHN+ +VC D+LS+ + V I+
Sbjct: 301 TYQYLLDPLIRHECKMEAALKNHSIIIFDEAHNVPSVCQDALSLETTLDNLLLVVSEIEP 360
Query: 801 L 801
L
Sbjct: 361 L 361
>gi|301756631|ref|XP_002914172.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like
protein-like [Ailuropoda melanoleuca]
Length = 908
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 570 VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWY 629
V+C S LE ++ R+ ++ G++L ++ VVP GVVCFF SY Y V A W
Sbjct: 663 VICSGPSSQQLEFTYQKRELPQMMDETGRILCNLCTVVPGGVVCFFPSYEYQRQVYAHWD 722
Query: 630 DQGIIDNLQKRKLLFIETQDA 650
G++ L RK +F E + A
Sbjct: 723 KSGLLARLAVRKKIFQEPKRA 743
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 6 DGKIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFY--EKFDAVGREAPLAPGV 54
++++ RC + S +++A E P C FY E+ + R+ L GV
Sbjct: 277 SAQLINDRCMEMQRSKHGKKNRAEEEKPKRRRQEHRAACPFYSYEQLHLL-RDQVLV-GV 334
Query: 55 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 114
I +L +G+E CPY+ +R AI A++VV Y LL L + VV+ D
Sbjct: 335 KDIEQLVALGKEARACPYYGSRFAIPAAQLVVLPYQMLLHAATRQAAGIRL-QGQVVLID 393
Query: 115 EAHN-IDNV 122
EAHN ID +
Sbjct: 394 EAHNLIDTI 402
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 661 DGKIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFY--EKFDAVGREAPLAPGV 709
++++ RC + S +++A E P C FY E+ + R+ L GV
Sbjct: 277 SAQLINDRCMEMQRSKHGKKNRAEEEKPKRRRQEHRAACPFYSYEQLHLL-RDQVLV-GV 334
Query: 710 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 769
I +L +G+E CPY+ +R AI A++VV Y LL L + VV+ D
Sbjct: 335 KDIEQLVALGKEARACPYYGSRFAIPAAQLVVLPYQMLLHAATRQAAGIRL-QGQVVLID 393
Query: 770 EAHN-IDNV 777
EAHN ID +
Sbjct: 394 EAHNLIDTI 402
>gi|281349618|gb|EFB25202.1| hypothetical protein PANDA_002012 [Ailuropoda melanoleuca]
Length = 897
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 570 VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWY 629
V+C S LE ++ R+ ++ G++L ++ VVP GVVCFF SY Y V A W
Sbjct: 662 VICSGPSSQQLEFTYQKRELPQMMDETGRILCNLCTVVPGGVVCFFPSYEYQRQVYAHWD 721
Query: 630 DQGIIDNLQKRKLLFIETQDA 650
G++ L RK +F E + A
Sbjct: 722 KSGLLARLAVRKKIFQEPKRA 742
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 16/129 (12%)
Query: 6 DGKIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFY--EKFDAVGREAPLAPGV 54
++++ RC + S ++++A E P C FY E+ + R+ L GV
Sbjct: 277 SAQLINDRCMEMQRSK-HEKNRAEEEKPKRRRQEHRAACPFYSYEQLHLL-RDQVLV-GV 333
Query: 55 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 114
I +L +G+E CPY+ +R AI A++VV Y LL L + VV+ D
Sbjct: 334 KDIEQLVALGKEARACPYYGSRFAIPAAQLVVLPYQMLLHAATRQAAGIRL-QGQVVLID 392
Query: 115 EAHN-IDNV 122
EAHN ID +
Sbjct: 393 EAHNLIDTI 401
Score = 48.9 bits (115), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 16/129 (12%)
Query: 661 DGKIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFY--EKFDAVGREAPLAPGV 709
++++ RC + S ++++A E P C FY E+ + R+ L GV
Sbjct: 277 SAQLINDRCMEMQRSK-HEKNRAEEEKPKRRRQEHRAACPFYSYEQLHLL-RDQVLV-GV 333
Query: 710 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 769
I +L +G+E CPY+ +R AI A++VV Y LL L + VV+ D
Sbjct: 334 KDIEQLVALGKEARACPYYGSRFAIPAAQLVVLPYQMLLHAATRQAAGIRL-QGQVVLID 392
Query: 770 EAHN-IDNV 777
EAHN ID +
Sbjct: 393 EAHNLIDTI 401
>gi|70914587|ref|XP_731889.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56502225|emb|CAH83865.1| hypothetical protein PC300724.00.0 [Plasmodium chabaudi chabaudi]
Length = 108
Score = 60.1 bits (144), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 49/70 (70%)
Query: 107 RSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYA 166
++ ++VFDEAHNID+VC+++LSV I+R + KA NI TL +++ + + KLREE
Sbjct: 11 KNDIIVFDEAHNIDSVCLEALSVNIDRSILNKASMNITTLFKKIEKSRIVNEDKLREECY 70
Query: 167 RLVEGLRDAQ 176
++++ ++ +
Sbjct: 71 KILKKIKSGK 80
Score = 60.1 bits (144), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 49/70 (70%)
Query: 762 RSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYA 821
++ ++VFDEAHNID+VC+++LSV I+R + KA NI TL +++ + + KLREE
Sbjct: 11 KNDIIVFDEAHNIDSVCLEALSVNIDRSILNKASMNITTLFKKIEKSRIVNEDKLREECY 70
Query: 822 RLVEGLRDAQ 831
++++ ++ +
Sbjct: 71 KILKKIKSGK 80
>gi|225559549|gb|EEH07831.1| DEAD_2 domain-containing protein [Ajellomyces capsulatus G186AR]
Length = 471
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQ------GIIDN 636
+ R+D S+I + G+ + + CV+PDGVV FF SY YL+ V+ W IID+
Sbjct: 48 TYGKRNDESMIIDLGRTIAALCCVIPDGVVVFFPSYDYLKQVLMIWKKHIPTTGSSIIDS 107
Query: 637 LQKRKLLFIETQD 649
+Q+ K +F E+QD
Sbjct: 108 IQRSKAVFHESQD 120
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVF 584
+ R+D S+I + G+ + + CV+PDGVV FF SY YL+ V
Sbjct: 49 YGKRNDESMIIDLGRTIAALCCVIPDGVVVFFPSYDYLKQVL 90
>gi|88602256|ref|YP_502434.1| helicase c2 [Methanospirillum hungatei JF-1]
gi|88187718|gb|ABD40715.1| Helicase c2 [Methanospirillum hungatei JF-1]
Length = 654
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 80/141 (56%), Gaps = 11/141 (7%)
Query: 723 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNVCV 779
GLCPY + QA + A +++ +YH+++D +I + L R +++ DEAHN +V
Sbjct: 184 GLCPYEVMAQASLQADVLICNYHHIMDEQIREQLYLNLQREPSEILLLIDEAHNCGDVMQ 243
Query: 780 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADS-AKLREEYARLVEGLRDAQSARETDV 838
D +SV ++ R +E+A +I +++ KE+K+ ++ +L + ++GLR +SA D
Sbjct: 244 DIMSVSLDHRALEQADHDISSIK---KEVKDLEAIRRLIPGIKKFLDGLR--RSAVTEDW 298
Query: 839 VLANPVLPDEILQGKTDYGIM 859
+P L ++ ++ YG M
Sbjct: 299 F--DPQLFSRMILRESLYGTM 317
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 66/110 (60%), Gaps = 7/110 (6%)
Query: 68 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNVCV 124
GLCPY + QA + A +++ +YH+++D +I + L R +++ DEAHN +V
Sbjct: 184 GLCPYEVMAQASLQADVLICNYHHIMDEQIREQLYLNLQREPSEILLLIDEAHNCGDVMQ 243
Query: 125 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADS-AKLREEYARLVEGLR 173
D +SV ++ R +E+A +I +++ KE+K+ ++ +L + ++GLR
Sbjct: 244 DIMSVSLDHRALEQADHDISSIK---KEVKDLEAIRRLIPGIKKFLDGLR 290
>gi|19115889|ref|NP_594977.1| ATP-dependent DNA helicase Chl1 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74581973|sp|O14147.1|CHL1_SCHPO RecName: Full=ATP-dependent RNA helicase chl1; AltName:
Full=Chromosome loss protein 1
gi|2408082|emb|CAB16287.1| ATP-dependent DNA helicase Chl1 (predicted) [Schizosaccharomyces
pombe]
Length = 844
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
E + +DD +++++ G+ + ++PDGVV FF S+ +L+ V W GI + L
Sbjct: 615 FEFTHKRKDDENLLKDLGRTFQNFISIIPDGVVVFFPSFAFLQQAVKVWEMNGITNRLNA 674
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
+K LFIE++D D+ + E + VD + S + R G N
Sbjct: 675 KKPLFIESKDFGDNPLDTFEHYKQSVDAGLSGMLFSVIGGRLSEGINF 722
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 18/130 (13%)
Query: 653 SRSVSKERDGKIVDGRCHSLTSSSVRDRHKA---GENIPVCDFYEKFDAVGREAPLAPGV 709
+ V K R ++ +C L S+ HK +N + DF R+ LA +
Sbjct: 257 NNEVRKLRPTSALNEKCIELQGSA----HKCPFLQDNTQLWDF--------RDEALAE-I 303
Query: 710 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 769
I +L E+G+ L +CPY+ R+A+ A+IV Y LL N ++ L + ++ + D
Sbjct: 304 MDIEELVELGQRLKVCPYYGTREAVDSAQIVTLPYPLLLQESARNALNLTL-KDNICIID 362
Query: 770 EAHN-IDNVC 778
EAHN ID +C
Sbjct: 363 EAHNLIDAIC 372
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 18/127 (14%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKA---GENIPVCDFYEKFDAVGREAPLAPGVYSI 57
V K R ++ +C L S+ HK +N + DF R+ LA + I
Sbjct: 260 VRKLRPTSALNEKCIELQGSA----HKCPFLQDNTQLWDF--------RDEALAE-IMDI 306
Query: 58 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAH 117
+L E+G+ L +CPY+ R+A+ A+IV Y LL N ++ L + ++ + DEAH
Sbjct: 307 EELVELGQRLKVCPYYGTREAVDSAQIVTLPYPLLLQESARNALNLTL-KDNICIIDEAH 365
Query: 118 N-IDNVC 123
N ID +C
Sbjct: 366 NLIDAIC 372
>gi|238506092|ref|XP_002384248.1| DNA helicase, putative [Aspergillus flavus NRRL3357]
gi|220690362|gb|EED46712.1| DNA helicase, putative [Aspergillus flavus NRRL3357]
Length = 777
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 5/175 (2%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V I + ++G+++G+CPY+ +R H++IV Y LL + + + + VVV
Sbjct: 233 VKDIEDIGKLGKDIGICPYYASRSVTKHSEIVTLPYPLLLQRSARDALDLSI-KGHVVVI 291
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 828
DEAHN+ + + SV I ++ ++ + T K + + + RLV +
Sbjct: 292 DEAHNLMDAISNIHSVTITLSELQTSLFQLTTYARKFKTRLKGKNRNYIAQVIRLVTSIT 351
Query: 829 DA-QSARETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEY 882
D ++ ET PV P +++ GK G+ + R + SKL + + Y
Sbjct: 352 DHLKTILETSQAPEGPVQPSDLMSGK---GVDQINPYKLCRYLRESKLARKVDGY 403
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 2/143 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V I + ++G+++G+CPY+ +R H++IV Y LL + + + + VVV
Sbjct: 233 VKDIEDIGKLGKDIGICPYYASRSVTKHSEIVTLPYPLLLQRSARDALDLSI-KGHVVVI 291
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 173
DEAHN+ + + SV I ++ ++ + T K + + + RLV +
Sbjct: 292 DEAHNLMDAISNIHSVTITLSELQTSLFQLTTYARKFKTRLKGKNRNYIAQVIRLVTSIT 351
Query: 174 DA-QSARETDVVLANPVLPDEIL 195
D ++ ET PV P +++
Sbjct: 352 DHLKTILETSQAPEGPVQPSDLM 374
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW-------YDQGIID 635
FETRD +I + G+ + + V+PDGVV FF SY YL V++ W ++ + D
Sbjct: 532 TFETRDSERMIVDLGRTMAALCQVIPDGVVAFFPSYDYLSQVLSIWKRTLAGEKNRTVYD 591
Query: 636 NLQKRKLLFIETQD 649
++ +K + E++D
Sbjct: 592 LIEGKKTILHESRD 605
Score = 44.3 bits (103), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVF 584
FETRD +I + G+ + + V+PDGVV FF SY YL V
Sbjct: 533 FETRDSERMIVDLGRTMAALCQVIPDGVVAFFPSYDYLSQVL 574
>gi|159472757|ref|XP_001694511.1| ATP-dependent DNA helicase [Chlamydomonas reinhardtii]
gi|158276735|gb|EDP02506.1| ATP-dependent DNA helicase [Chlamydomonas reinhardtii]
Length = 897
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 17/131 (12%)
Query: 5 RDGKIVDGRCHSLTSSSV---RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLK 61
R G+ VD C L R R+K G P+ +A V+ I +L
Sbjct: 171 RTGR-VDEECERLAREEAFPCRFRNKGGGKQPM------------RVAVAAQVHDIEELS 217
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121
+ CPYF AR + A++V Y YLLDP + + ++ SSV++FDEAHN+++
Sbjct: 218 SACAKAKTCPYFTARDLALTAELVFCPYSYLLDPVVRAALGLDVG-SSVLIFDEAHNMED 276
Query: 122 VCVDSLSVRIN 132
VC + S+ ++
Sbjct: 277 VCREGGSMDLD 287
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 17/131 (12%)
Query: 660 RDGKIVDGRCHSLTSSSV---RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLK 716
R G+ VD C L R R+K G P+ +A V+ I +L
Sbjct: 171 RTGR-VDEECERLAREEAFPCRFRNKGGGKQPM------------RVAVAAQVHDIEELS 217
Query: 717 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 776
+ CPYF AR + A++V Y YLLDP + + ++ SSV++FDEAHN+++
Sbjct: 218 SACAKAKTCPYFTARDLALTAELVFCPYSYLLDPVVRAALGLDVG-SSVLIFDEAHNMED 276
Query: 777 VCVDSLSVRIN 787
VC + S+ ++
Sbjct: 277 VCREGGSMDLD 287
Score = 43.1 bits (100), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 433 VFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
V FP++ Y Q ++M ++ + LD +G+ LLE P+G GKT SLL +A+
Sbjct: 11 VHFPHQ-PYGVQLSFMEKMLRTLDEQGNALLEAPTGCGKTLSLLCAALAWQ 60
>gi|334322387|ref|XP_001363088.2| PREDICTED: Fanconi anemia group J protein [Monodelphis domestica]
Length = 1179
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 13/126 (10%)
Query: 29 GENIPVCDFYEKFDAVGREAPLA--PGV---YSITKLKEMGRELGLCPYFLARQAIIHAK 83
G+N C F + + L PG+ + I L +G++L CPY+ AR+ ++ A
Sbjct: 254 GKNGKSCYFNHGVHKMSEQQALQTFPGMCRAWDIEDLVSLGKKLKACPYYAARELMLDAD 313
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 136
IV Y+YLLD +I + L + +++ DEAHNI+ +S S +R R +
Sbjct: 314 IVFCPYNYLLDSQIRESMDINL-KEQIIILDEAHNIEECARESASYSVTEIQLRFARDEL 372
Query: 137 EKAVGN 142
+ V N
Sbjct: 373 DSMVSN 378
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 13/126 (10%)
Query: 684 GENIPVCDFYEKFDAVGREAPLA--PGV---YSITKLKEMGRELGLCPYFLARQAIIHAK 738
G+N C F + + L PG+ + I L +G++L CPY+ AR+ ++ A
Sbjct: 254 GKNGKSCYFNHGVHKMSEQQALQTFPGMCRAWDIEDLVSLGKKLKACPYYAARELMLDAD 313
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 791
IV Y+YLLD +I + L + +++ DEAHNI+ +S S +R R +
Sbjct: 314 IVFCPYNYLLDSQIRESMDINL-KEQIIILDEAHNIEECARESASYSVTEIQLRFARDEL 372
Query: 792 EKAVGN 797
+ V N
Sbjct: 373 DSMVSN 378
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAH 486
+I + + FP + YP Q A M + + L++K HCLLE P+G+GK+ +LL +A+ +
Sbjct: 9 IIGGVKIHFPCK-AYPSQLALMNSIVRGLNSKQHCLLESPTGSGKSLALLCSALAWQQSL 67
Query: 487 PLDVT 491
D T
Sbjct: 68 SEDST 72
>gi|405960555|gb|EKC26471.1| Fanconi anemia group J protein [Crassostrea gigas]
Length = 1410
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
+ I + + + +CPYF R A IV Y+YL+DP I + L + VV+
Sbjct: 279 AWDIEDFVGLSKNIKVCPYFATRGLRSGADIVFCPYNYLIDPVIRKSMEISL-KDQVVIL 337
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 173
DEAHN+++ DS +I +EKAV + E E+ A+ ++R+ A L+ +R
Sbjct: 338 DEAHNMEDTSRDSAGEKIGDDALEKAVNELD--EMIKYEILTAEHLRVRQLCAGLLGLIR 395
Query: 174 DAQ 176
D Q
Sbjct: 396 DNQ 398
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
+ I + + + +CPYF R A IV Y+YL+DP I + L + VV+
Sbjct: 279 AWDIEDFVGLSKNIKVCPYFATRGLRSGADIVFCPYNYLIDPVIRKSMEISL-KDQVVIL 337
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 828
DEAHN+++ DS +I +EKAV + E E+ A+ ++R+ A L+ +R
Sbjct: 338 DEAHNMEDTSRDSAGEKIGDDALEKAVNELD--EMIKYEILTAEHLRVRQLCAGLLGLIR 395
Query: 829 DAQ 831
D Q
Sbjct: 396 DNQ 398
Score = 47.0 bits (110), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
MI + V FP + YP Q++ M ++ K ++ + +CLLE P+G+GK+ +LL +A+ A
Sbjct: 25 MIHGVEVVFPCK-PYPSQFSMMEKVIKGIERRENCLLESPTGSGKSLALLCSALAWQTA 82
>gi|348567428|ref|XP_003469501.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein-like
[Cavia porcellus]
Length = 1209
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 29 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G+N C FY + + + + I +L +GR+L CPY+ AR+ A
Sbjct: 304 GKNGKSCYFYHGVNKISDQHTFQALQGMHKAWDIEELVSLGRKLKACPYYTARELTEGAD 363
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +
Sbjct: 364 IIFCPYNYLLDAQIRESMDINL-KEQVVILDEAHNIEDCARESASYSV 410
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 684 GENIPVCDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G+N C FY + + + + I +L +GR+L CPY+ AR+ A
Sbjct: 304 GKNGKSCYFYHGVNKISDQHTFQALQGMHKAWDIEELVSLGRKLKACPYYTARELTEGAD 363
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
I+ Y+YLLD +I + L + VV+ DEAHNI++ +S S +
Sbjct: 364 IIFCPYNYLLDAQIRESMDINL-KEQVVILDEAHNIEDCARESASYSV 410
Score = 47.0 bits (110), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY---MN 484
I + + FP + YP Q A M + + L+++ HCLLE P+G+GK+ +LL +A+ ++
Sbjct: 10 IGGVKINFPCK-AYPSQLAMMNCIVRGLNSRQHCLLESPTGSGKSLALLCSALAWQQSLS 68
Query: 485 AHPLD 489
P+D
Sbjct: 69 GKPVD 73
Score = 43.1 bits (100), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 554 NYGQLLVDIACVVPDG-VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVV 612
N Q+ V P G +C ++ ++E+ FE +D++ G LL+ + V G++
Sbjct: 641 NNSQVWVGTIGSGPKGRNLC--ATFQHIET-FEFQDEV------GALLLSVCQTVGQGIL 691
Query: 613 CFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
CF SY LE + W G+ NL+ K + +E Q
Sbjct: 692 CFLPSYKLLEKLKERWISTGLWHNLELVKTVIVEPQ 727
>gi|448302093|ref|ZP_21492077.1| DEAD/DEAH box helicase [Natronorubrum tibetense GA33]
gi|445582089|gb|ELY36434.1| DEAD/DEAH box helicase [Natronorubrum tibetense GA33]
Length = 716
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 94/225 (41%), Gaps = 24/225 (10%)
Query: 655 SVSKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPVCDFYEKF---DAVGREAPLAPGVY 710
S S+E DG D R + ++ +R E VCD+Y D A L V
Sbjct: 135 SESQEGDGGAADARSAVMDELENIEERLDDLEEQNVCDYYRNNLTEDTDDFFAWLFEDVR 194
Query: 711 SITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVV 767
+ ++ E C Y L ++ I +VV +YH+LLD I + L R + V
Sbjct: 195 TPDEIYEHAENQEFCGYELLKEGIEGVDLVVCNYHHLLDSTIREQFFRWLGREPEDVIAV 254
Query: 768 FDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYAR-LVE- 825
FDEAHN+++ + + + RT + A+ + + E D+A + R LVE
Sbjct: 255 FDEAHNVEDAAREHATRTCSERTFDSALDELADADDPRSE----DAANALSAFHRALVET 310
Query: 826 -------GLRDAQSARETDVVLANPVLPD----EILQGKTDYGIM 859
G R+A TDV +AN D E LQ + GI
Sbjct: 311 YEDSFGFGDREAIDENWTDVSIANENRKDDLTLEFLQRYSGRGIQ 355
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 91/214 (42%), Gaps = 20/214 (9%)
Query: 2 SKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPVCDFYEKF---DAVGREAPLAPGVYSI 57
S+E DG D R + ++ +R E VCD+Y D A L V +
Sbjct: 137 SQEGDGGAADARSAVMDELENIEERLDDLEEQNVCDYYRNNLTEDTDDFFAWLFEDVRTP 196
Query: 58 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFD 114
++ E C Y L ++ I +VV +YH+LLD I + L R + VFD
Sbjct: 197 DEIYEHAENQEFCGYELLKEGIEGVDLVVCNYHHLLDSTIREQFFRWLGREPEDVIAVFD 256
Query: 115 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYAR-LVE--- 170
EAHN+++ + + + RT + A+ + + E D+A + R LVE
Sbjct: 257 EAHNVEDAAREHATRTCSERTFDSALDELADADDPRSE----DAANALSAFHRALVETYE 312
Query: 171 -----GLRDAQSARETDVVLANPVLPDEILQEVV 199
G R+A TDV +AN D++ E +
Sbjct: 313 DSFGFGDREAIDENWTDVSIANENRKDDLTLEFL 346
>gi|431890862|gb|ELK01741.1| Fanconi anemia group J protein [Pteropus alecto]
Length = 1164
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 13/126 (10%)
Query: 29 GENIPVCDFYEKFDAVGREAPLAP--GVYS---ITKLKEMGRELGLCPYFLARQAIIHAK 83
G+N C FY + + L G+Y I +L +G+++ CPY+ AR+ + +A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTFQGMYKAWDIEELISLGKKVKACPYYTARELMENAD 363
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 136
I+ Y+YLLD +I + L + V++ DEAHNI++ +S S +R R +
Sbjct: 364 IIFCPYNYLLDAQIRESMDINL-KEQVIILDEAHNIEDCARESASYSVTEVQLRFARDEL 422
Query: 137 EKAVGN 142
+ V N
Sbjct: 423 DSMVNN 428
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 13/126 (10%)
Query: 684 GENIPVCDFYEKFDAVGREAPLAP--GVYS---ITKLKEMGRELGLCPYFLARQAIIHAK 738
G+N C FY + + L G+Y I +L +G+++ CPY+ AR+ + +A
Sbjct: 304 GKNGKSCYFYHGVHKISDQHTLQTFQGMYKAWDIEELISLGKKVKACPYYTARELMENAD 363
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS-------VRINRRTI 791
I+ Y+YLLD +I + L + V++ DEAHNI++ +S S +R R +
Sbjct: 364 IIFCPYNYLLDAQIRESMDINL-KEQVIILDEAHNIEDCARESASYSVTEVQLRFARDEL 422
Query: 792 EKAVGN 797
+ V N
Sbjct: 423 DSMVNN 428
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY---MN 484
I + + FP + YP Q A M + + L+ K HCLLE P+G+GK+ +LL +A+ ++
Sbjct: 10 IGGVKINFPCK-AYPSQLAMMNSIVRGLNNKQHCLLESPTGSGKSLALLCSALAWQQSLS 68
Query: 485 AHPLD 489
P+D
Sbjct: 69 GKPVD 73
Score = 41.6 bits (96), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L + F+ + + G LL+ + V G++CF SY LE + W D G+ +L+
Sbjct: 660 LCATFQHTETFAFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLDTGLWRDLEL 719
Query: 640 RKLLFIETQ 648
K + IE Q
Sbjct: 720 VKTVIIEPQ 728
>gi|367032502|ref|XP_003665534.1| hypothetical protein MYCTH_2309404 [Myceliophthora thermophila ATCC
42464]
gi|347012805|gb|AEO60289.1| hypothetical protein MYCTH_2309404 [Myceliophthora thermophila ATCC
42464]
Length = 624
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 21/98 (21%)
Query: 567 PDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVA 626
P CF E F+ R + ++IR G +L++I VVPDGVV FF SY YL+ VVA
Sbjct: 326 PSASDCF-------EFSFQRRQEPAMIRQLGLVLLNICSVVPDGVVVFFPSYGYLDQVVA 378
Query: 627 SWYDQ--------------GIIDNLQKRKLLFIETQDA 650
+W Q + D L +K +F ET+ A
Sbjct: 379 AWQTQEAGTGATTTTTQQPTLWDRLAAKKAVFRETKGA 416
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 85/184 (46%), Gaps = 5/184 (2%)
Query: 701 REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL 760
R+A LA V I L +G+EL +CPY+ +R AI A++V Y LL + + L
Sbjct: 14 RDAALAT-VPDIEDLYRVGKELQVCPYYASRTAIPGAEVVTLPYPLLLQKSARDALGITL 72
Query: 761 ARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEY 820
+VV+ DEAHNI + + + I + +A + + + ++ + +
Sbjct: 73 -EGNVVIIDEAHNIMDAVANVYAAEICLSELRRARQMLGIYVKRFGKKLKGENRVMVAQV 131
Query: 821 ARLVEGLRDAQSARETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQ 880
R+VE L + + + + V P+ +L+ + I ++ + + + SKL +Q
Sbjct: 132 GRVVESLSECLNGQLSAKGDQGIVDPNTVLKARGADQINLY---QLIKYIQESKLAYKVQ 188
Query: 881 EYLT 884
YL
Sbjct: 189 SYLA 192
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 538 CIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
C F+ R + ++IR G +L++I VVPDGVV FF SY YL+ V
Sbjct: 331 CFEFSFQRRQEPAMIRQLGLVLLNICSVVPDGVVVFFPSYGYLDQV 376
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 46 REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL 105
R+A LA V I L +G+EL +CPY+ +R AI A++V Y LL + + L
Sbjct: 14 RDAALAT-VPDIEDLYRVGKELQVCPYYASRTAIPGAEVVTLPYPLLLQKSARDALGITL 72
Query: 106 ARSSVVVFDEAHNIDNVCVDSLSVRI 131
+VV+ DEAHNI + + + I
Sbjct: 73 -EGNVVIIDEAHNIMDAVANVYAAEI 97
>gi|341583148|ref|YP_004763640.1| ERCC2/XPD/Rad3-related DNA repair helicase [Thermococcus sp. 4557]
gi|340810806|gb|AEK73963.1| ERCC2/XPD/Rad3-related DNA repair helicase [Thermococcus sp. 4557]
Length = 671
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 65/108 (60%), Gaps = 10/108 (9%)
Query: 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKL 493
+FPY+ + P Q ++ + KA++ + ++E P+G GKT S+L+ ++ + K+
Sbjct: 29 YFPYKNLRPNQRDFIELVSKAVENGENVIIEAPTGFGKTVSVLAGVLPHAKEMGY---KV 85
Query: 494 LYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHS 541
LY +RT ++++V+EEL + + + ++G+ L SRK+LC+H+
Sbjct: 86 LYLARTHRQMDRVIEELKAI-------SRKSPVSGVELRSRKDLCLHT 126
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 18/119 (15%)
Query: 35 CDFYE-------KFDAVGR---EAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKI 84
C+FYE +FD + R P P ++ + + L LCPY L ++ A +
Sbjct: 151 CEFYENEKKKKAEFDELVRFFLGEPSHP-----AEILDYSQTLELCPYDLTKRIAEKADV 205
Query: 85 VVYSYHYLLDPKIAN--VVSKELARSS-VVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 140
+V SY YLL P I + S +L S +VVFDEAHN+ + + +LS +I+ TI +A+
Sbjct: 206 IVASYLYLLSPTIRENFISSLDLDYSDMIVVFDEAHNLPDQAISALSDKISINTINRAI 264
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 18/119 (15%)
Query: 690 CDFYE-------KFDAVGR---EAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKI 739
C+FYE +FD + R P P ++ + + L LCPY L ++ A +
Sbjct: 151 CEFYENEKKKKAEFDELVRFFLGEPSHP-----AEILDYSQTLELCPYDLTKRIAEKADV 205
Query: 740 VVYSYHYLLDPKIAN--VVSKELARSS-VVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 795
+V SY YLL P I + S +L S +VVFDEAHN+ + + +LS +I+ TI +A+
Sbjct: 206 IVASYLYLLSPTIRENFISSLDLDYSDMIVVFDEAHNLPDQAISALSDKISINTINRAI 264
>gi|407037674|gb|EKE38739.1| DNA repair helicase, putative [Entamoeba nuttalli P19]
Length = 1034
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 20/121 (16%)
Query: 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLL 494
FPY+ Y Q M +++A+ H L+E P+GTGKT LL + + + +++
Sbjct: 86 FPYQPPYQPQIEMMNSIQQAVKEGKHLLMESPTGTGKTLVLLHSTLTFPDM------RVV 139
Query: 495 YCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRN 554
Y SRT ++ +VV E ++ N+ G+VL+SR CI++ +T DD +N
Sbjct: 140 YASRTHNQLAQVVNETKKIG----------NIKGIVLASRDLYCIYNPIKTCDD----KN 185
Query: 555 Y 555
Y
Sbjct: 186 Y 186
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 79/173 (45%), Gaps = 24/173 (13%)
Query: 723 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIAN-----VVSKELA--RSSVVVFDEAHNID 775
LCPY+ AR A + +K+++ Y+++ I + ++ + A R V+V DEAHN++
Sbjct: 248 NLCPYYYARWATVRSKLILCPYNFVTSVSIRHSSDIFLIDQNSAHQREFVLVMDEAHNVE 307
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEAD-SAKLREEYARLVEGLRDAQSAR 834
+ +DSL+ + + + I+ + +K++ E + L E +E
Sbjct: 308 DAFMDSLTFNFTESLLNQTIETIKFHKKRVKQIPENFLTISLLTELISTIESF------- 360
Query: 835 ETDVVLANPVLPDEILQGKTDYGIMIFADKRF----ARSDKRSKLPKWIQEYL 883
+ + N LP + Y +F D+ F RS S+L + I EY+
Sbjct: 361 --SIWMKNRSLP---YKDSEHYLYGVFEDQAFLPFVERSPPSSRLLEAISEYI 408
Score = 47.8 bits (112), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 68 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIAN-----VVSKELA--RSSVVVFDEAHNID 120
LCPY+ AR A + +K+++ Y+++ I + ++ + A R V+V DEAHN++
Sbjct: 248 NLCPYYYARWATVRSKLILCPYNFVTSVSIRHSSDIFLIDQNSAHQREFVLVMDEAHNVE 307
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKE 155
+ +DSL+ + + + I+ + +K++ E
Sbjct: 308 DAFMDSLTFNFTESLLNQTIETIKFHKKRVKQIPE 342
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%)
Query: 585 ETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLF 644
+T D +I G + + G + FF+SY L +V W GI L K K +F
Sbjct: 557 KTSQDNEMIEQAGDTMFRVLSKSRGGALVFFSSYNMLNRIVELWKQHGIYTQLNKLKAIF 616
Query: 645 IETQDALDSRSVSKE 659
IE++D + + KE
Sbjct: 617 IESKDKNEFKKDFKE 631
>gi|410963605|ref|XP_003988355.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein 8
[Felis catus]
Length = 907
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C S LE ++ R+ ++ G++L ++ VVP GV
Sbjct: 645 VVEFSCGHVIPPDNILPLVICSGPSSQQLEFTYQKRELPQMMDETGRILYNLCNVVPGGV 704
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY Y V A W G++ L RK +F E + A
Sbjct: 705 VCFFPSYEYQRQVHAHWDKSGLLARLAVRKKIFQEPKRA 743
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 8 KIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFY--EKFDAVGREAPLAPGVYS 56
++++ RC + S + +A + P C FY E+ + E + GV
Sbjct: 279 QLINDRCMEMQRSKHGKKSRAEDEKPKRRRQEHQAACPFYSYEQLQLLRDEVLV--GVKD 336
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I +L +G+E CPY+ +R AI A++VV Y LL L + VVV DEA
Sbjct: 337 IEQLVSLGKEARACPYYGSRFAIPAAQLVVLPYQMLLHGATRQAAGIRL-QGQVVVIDEA 395
Query: 117 HNI 119
HN+
Sbjct: 396 HNL 398
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 663 KIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFY--EKFDAVGREAPLAPGVYS 711
++++ RC + S + +A + P C FY E+ + E + GV
Sbjct: 279 QLINDRCMEMQRSKHGKKSRAEDEKPKRRRQEHQAACPFYSYEQLQLLRDEVLV--GVKD 336
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I +L +G+E CPY+ +R AI A++VV Y LL L + VVV DEA
Sbjct: 337 IEQLVSLGKEARACPYYGSRFAIPAAQLVVLPYQMLLHGATRQAAGIRL-QGQVVVIDEA 395
Query: 772 HNI 774
HN+
Sbjct: 396 HNL 398
>gi|345317478|ref|XP_001517598.2| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
[Ornithorhynchus anatinus]
Length = 899
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ AC + PD V+C S LE ++ R+ ++ G++L ++ VVP GV
Sbjct: 644 VVEFACGHVIPPDNILPLVLCSGPSNQPLEFTYQKRELPQMMDETGRILFNLCNVVPGGV 703
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY Y V A W G++ L +K +F E + A
Sbjct: 704 VCFFPSYEYQRQVQARWEHSGLLARLGIKKKVFQEPKKA 742
Score = 47.4 bits (111), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V I +L +G+E CPY+ +R AI A++VV Y LL +L + VV+
Sbjct: 330 VKDIEQLVALGQESHACPYYGSRYAIPAAQLVVLPYQMLLHSATRRAAGIQL-QDQVVII 388
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTLEGTLKEMK 154
DEAHN+ + S +N + +A +Q LE K +K
Sbjct: 389 DEAHNLIDTITAIHSAEVNGAQLCQAYSQLLQYLERYRKRLK 430
Score = 47.4 bits (111), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V I +L +G+E CPY+ +R AI A++VV Y LL +L + VV+
Sbjct: 330 VKDIEQLVALGQESHACPYYGSRYAIPAAQLVVLPYQMLLHSATRRAAGIQL-QDQVVII 388
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTLEGTLKEMK 809
DEAHN+ + S +N + +A +Q LE K +K
Sbjct: 389 DEAHNLIDTITAIHSAEVNGAQLCQAYSQLLQYLERYRKRLK 430
>gi|118387755|ref|XP_001026980.1| DNA repair helicase (rad3) [Tetrahymena thermophila]
gi|89308750|gb|EAS06738.1| DNA repair helicase (rad3) [Tetrahymena thermophila SB210]
Length = 1433
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 2/131 (1%)
Query: 34 VCDFYEKFDAVGREAP-LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYL 92
C FY G++ P + V I +L+E GR CPY+ +R+ A +++ Y +L
Sbjct: 165 TCQFYNYSGDGGKQQPKILDEVLDIEELQERGRCKKFCPYYYSREIKDDADLIILPYSFL 224
Query: 93 LDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE 152
L + + + S+++FDEAHN+ + + S ++++ IE++ + LE L
Sbjct: 225 LKQSRFQEF-QVILKDSIIIFDEAHNVPSAAEEGTSYKVDQNLIEESNKELDYLEKNLTP 283
Query: 153 MKEADSAKLRE 163
D+ ++E
Sbjct: 284 NMRTDTYHIKE 294
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 2/131 (1%)
Query: 689 VCDFYEKFDAVGREAP-LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYL 747
C FY G++ P + V I +L+E GR CPY+ +R+ A +++ Y +L
Sbjct: 165 TCQFYNYSGDGGKQQPKILDEVLDIEELQERGRCKKFCPYYYSREIKDDADLIILPYSFL 224
Query: 748 LDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE 807
L + + + S+++FDEAHN+ + + S ++++ IE++ + LE L
Sbjct: 225 LKQSRFQEF-QVILKDSIIIFDEAHNVPSAAEEGTSYKVDQNLIEESNKELDYLEKNLTP 283
Query: 808 MKEADSAKLRE 818
D+ ++E
Sbjct: 284 NMRTDTYHIKE 294
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 433 VFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
+ FP++ Y Q YM + +AL++K + LL+ P+GTGKT SLL + ++
Sbjct: 53 ILFPFK-PYQIQEDYMRSIVEALNSKSNALLQSPTGTGKTLSLLCACLGWL 102
>gi|350584454|ref|XP_003126634.3| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
8-like [Sus scrofa]
Length = 693
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD V+C + LE ++ R+ ++ G++L ++ VVP GV
Sbjct: 431 VVEFSCGHVIPPDNILPLVICSGPANQQLEFTYQKRELPQMMDETGRILCNLCNVVPGGV 490
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKE 659
VCFF SY Y V A W G++ L RK +F E + A V KE
Sbjct: 491 VCFFPSYEYQRQVHAHWDRSGLLARLAVRKKIFQEPKRANQVEQVLKE 538
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 15/162 (9%)
Query: 8 KIVDGRCHSLTSS---------SVRDRHKAGENIPVCDFY--EKFDAVGREAPLAPGVYS 56
++++ RC + S + R + E C FY E+ + E + G
Sbjct: 65 QLINDRCVDMQRSRRGKKSIAEEAKPRRRKQEQRTACPFYSHERLQLLRDEVLV--GAKD 122
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I +L +G+E CPY+ +R AI A++VV Y +L L + VV+ DEA
Sbjct: 123 IEQLVALGKEARACPYYGSRFAIPAAQLVVLPYQMVLHAATRQAAGIRL-QGQVVLVDEA 181
Query: 117 HNIDNVCVDSLSVRINRRTIEKAVGN-IQTLEGTLKEMKEAD 157
HN+ + SV ++ + +A +Q +E K +K +
Sbjct: 182 HNLMDTITGIHSVEVSGSQLCQAHSQLLQYMERYGKRLKAKN 223
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 15/162 (9%)
Query: 663 KIVDGRCHSLTSS---------SVRDRHKAGENIPVCDFY--EKFDAVGREAPLAPGVYS 711
++++ RC + S + R + E C FY E+ + E + G
Sbjct: 65 QLINDRCVDMQRSRRGKKSIAEEAKPRRRKQEQRTACPFYSHERLQLLRDEVLV--GAKD 122
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I +L +G+E CPY+ +R AI A++VV Y +L L + VV+ DEA
Sbjct: 123 IEQLVALGKEARACPYYGSRFAIPAAQLVVLPYQMVLHAATRQAAGIRL-QGQVVLVDEA 181
Query: 772 HNIDNVCVDSLSVRINRRTIEKAVGN-IQTLEGTLKEMKEAD 812
HN+ + SV ++ + +A +Q +E K +K +
Sbjct: 182 HNLMDTITGIHSVEVSGSQLCQAHSQLLQYMERYGKRLKAKN 223
>gi|57640719|ref|YP_183197.1| ERCC2/XPD/Rad3-related DNA repair helicase [Thermococcus
kodakarensis KOD1]
gi|57159043|dbj|BAD84973.1| ERCC2/XPD/Rad3-related DNA repair helicase [Thermococcus
kodakarensis KOD1]
Length = 637
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 65/108 (60%), Gaps = 10/108 (9%)
Query: 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKL 493
+FPYE + P Q ++ + +A+ + ++E P+G GKT S+L+ ++ + + K+
Sbjct: 4 YFPYENLRPNQREFIELIGEAVKNGENAIVEAPTGFGKTISVLAGVLPFAKEYGY---KV 60
Query: 494 LYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHS 541
LY +RT ++++V+EEL + H ++ ++G+ L SRK LC+H+
Sbjct: 61 LYLARTHRQMDRVIEELKAI------HRKK-PVSGVELRSRKELCLHT 101
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 16/138 (11%)
Query: 67 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA---RSSVVVFDEAHNIDNVC 123
L LCPY L ++ A ++V SY Y L P I + L +V+FDEAHN+ +
Sbjct: 163 LELCPYDLTKRIAEKADVIVASYLYALSPSIRESLISSLGVDYSDLIVIFDEAHNLPDQA 222
Query: 124 VDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR--ET 181
+ +LS R++ TI +A+ KE E ++ + L +GL S + E
Sbjct: 223 ISALSDRLSIHTINRAI----------KEADEYREHEIANFLSILGKGLEKLYSEKLAER 272
Query: 182 DVVLANPVLPDEILQEVV 199
DV A PV P+ + V+
Sbjct: 273 DVEEA-PVQPELVFTHVI 289
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 722 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA---RSSVVVFDEAHNIDNVC 778
L LCPY L ++ A ++V SY Y L P I + L +V+FDEAHN+ +
Sbjct: 163 LELCPYDLTKRIAEKADVIVASYLYALSPSIRESLISSLGVDYSDLIVIFDEAHNLPDQA 222
Query: 779 VDSLSVRINRRTIEKAV 795
+ +LS R++ TI +A+
Sbjct: 223 ISALSDRLSIHTINRAI 239
>gi|403159247|ref|XP_003319882.2| hypothetical protein PGTG_00794 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168014|gb|EFP75463.2| hypothetical protein PGTG_00794 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 826
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L+ F ++DD + + GQ + +I ++ DGV+CFF SY L+++ W G+ L+
Sbjct: 616 LQLKFSSKDDPKMQNDLGQSVANICNIIKDGVICFFPSYASLDTLTDRWKKTGLWTRLEN 675
Query: 640 RKLLFIETQDALD 652
+K +FIE + A D
Sbjct: 676 KKKIFIEPKSAAD 688
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 18/109 (16%)
Query: 11 DGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLC 70
D RC L S +DR + DF R+ LA ++ I +L E+GR C
Sbjct: 272 DKRCPHLPSLDEQDR--------MNDF--------RDHALAQ-IHDIEELAELGRVQNCC 314
Query: 71 PYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
PY+ +R+A+ A+IV Y+ LL + L + +VV+ DEAHN+
Sbjct: 315 PYYGSRKAVRRAQIVTLPYNLLLQNSSREALGISLEK-NVVIVDEAHNL 362
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 18/109 (16%)
Query: 666 DGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLC 725
D RC L S +DR + DF R+ LA ++ I +L E+GR C
Sbjct: 272 DKRCPHLPSLDEQDR--------MNDF--------RDHALAQ-IHDIEELAELGRVQNCC 314
Query: 726 PYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
PY+ +R+A+ A+IV Y+ LL + L + +VV+ DEAHN+
Sbjct: 315 PYYGSRKAVRRAQIVTLPYNLLLQNSSREALGISLEK-NVVIVDEAHNL 362
>gi|440895926|gb|ELR47985.1| Putative ATP-dependent RNA helicase DDX11, partial [Bos grunniens
mutus]
Length = 924
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 570 VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWY 629
++C S L+ ++ R V+ G++L ++ VVP GVVCFF SY Y V A W
Sbjct: 657 IICSGPSNQILDFTYQKRGLPQVMDETGRILCNLCNVVPGGVVCFFPSYEYQHQVCAHWE 716
Query: 630 DQGIIDNLQKRKLLFIETQDA 650
G++ L RK +F E + A
Sbjct: 717 KSGLLARLTIRKKIFQEPRKA 737
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 34 VCDFY--EKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 91
C FY E+ + R+ LA GV + +L +G E CPY+ R AI A++VV Y
Sbjct: 308 TCPFYSYERLQLL-RDEVLA-GVKDVEQLVALGEEAQACPYYGGRFAIPAAQLVVLPYQM 365
Query: 92 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
LL L + VVV DEAHN+ + + SV +
Sbjct: 366 LLHAPTRQAAGIRL-QGQVVVIDEAHNLIDTITNIHSVEV 404
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 689 VCDFY--EKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
C FY E+ + R+ LA GV + +L +G E CPY+ R AI A++VV Y
Sbjct: 308 TCPFYSYERLQLL-RDEVLA-GVKDVEQLVALGEEAQACPYYGGRFAIPAAQLVVLPYQM 365
Query: 747 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
LL L + VVV DEAHN+ + + SV +
Sbjct: 366 LLHAPTRQAAGIRL-QGQVVVIDEAHNLIDTITNIHSVEV 404
>gi|300122780|emb|CBK23797.2| unnamed protein product [Blastocystis hominis]
Length = 376
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 9/83 (10%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES---------VVASWYD 630
L S + R + V +YG LLV++A VVPDG++CFFTSY ++ + + W
Sbjct: 118 LSSKYTLRANNQVAVSYGSLLVEMARVVPDGIICFFTSYSHISNPFLIWNRCLFLCEWDA 177
Query: 631 QGIIDNLQKRKLLFIETQDALDS 653
G+I ++ KLL+IE++D +S
Sbjct: 178 HGVIRDIYNYKLLYIESRDINES 200
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
++ K DY +IFAD R+ D S+LP+WIQ+ L NLS E AV ++ + ++MA+
Sbjct: 291 IRNKNDYSFVIFADYRYDLVDHSSRLPEWIQQQLPPAHHNLSVEMAVITARTFFKKMAR 349
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 356 VLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSM 407
VL C D+ ++P+F F+ ++ITSGTLS LD+YPK+L F P++ S +
Sbjct: 23 VLKLICCDAGYVMQPLFTAFKHIIITSGTLS-LDLYPKLLQFHPLVAKSICI 73
>gi|391337516|ref|XP_003743113.1| PREDICTED: Fanconi anemia group J protein-like [Metaseiulus
occidentalis]
Length = 567
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 55 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 114
+ I + +G+ LCPY+ + Q A IV Y+Y+LDP+I V ++ +++V+ D
Sbjct: 243 WDIEDIVTVGKRHTLCPYYWSIQLAEDADIVFCPYNYILDPRIRAAVDIQV-ENNIVILD 301
Query: 115 EAHNIDNVCVDSLSVRI 131
EAHNI+++C D++ + I
Sbjct: 302 EAHNIEDICRDAMGMEI 318
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 710 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 769
+ I + +G+ LCPY+ + Q A IV Y+Y+LDP+I V ++ +++V+ D
Sbjct: 243 WDIEDIVTVGKRHTLCPYYWSIQLAEDADIVFCPYNYILDPRIRAAVDIQV-ENNIVILD 301
Query: 770 EAHNIDNVCVDSLSVRI 786
EAHNI+++C D++ + I
Sbjct: 302 EAHNIEDICRDAMGMEI 318
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
+ L V FPYE YP+Q M L AL K +CLLE P+GTGK+ SLL +A+
Sbjct: 16 LGGLKVLFPYENPYPQQKVMMSRLITALKQKKNCLLESPTGTGKSLSLLCAALAF 70
>gi|448380942|ref|ZP_21561299.1| helicase c2 [Haloterrigena thermotolerans DSM 11522]
gi|445663598|gb|ELZ16341.1| helicase c2 [Haloterrigena thermotolerans DSM 11522]
Length = 716
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 106/248 (42%), Gaps = 27/248 (10%)
Query: 631 QGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPV 689
+ ++D Q R+ L ++ L + S++ DG D R + S+ +R + E V
Sbjct: 114 RAVVDAEQDREQLERRQRELL---AESQDGDGSAADARSAVMDELESIEERLEDLEEQNV 170
Query: 690 CDFYEKF---DAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
CD+Y D L V + ++ E LC Y L ++ I +VV +YH+
Sbjct: 171 CDYYRNNLTQDTDEFFGWLFEDVRTPDEIYEYAERQELCGYELLKEGIEGVDLVVCNYHH 230
Query: 747 LLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEG 803
LLD I + L R + VFDEAHN+++ + + + RT E A+ + +
Sbjct: 231 LLDSTIREQFFRWLGRDPEDVIAVFDEAHNVEDAAREHATRTCSERTFESALEELADSDD 290
Query: 804 TLKEMKEADSAKLREEYAR-LVE--------GLRDAQSARETDVVLANPVLPD----EIL 850
E D+A + + R LVE G R+ TDV +AN D E L
Sbjct: 291 PRAE----DAANVLSAFHRALVEIYEDSFGFGDREGVGENWTDVPIANDDRKDDLTLEFL 346
Query: 851 QGKTDYGI 858
Q + GI
Sbjct: 347 QRYSGRGI 354
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 92/214 (42%), Gaps = 20/214 (9%)
Query: 2 SKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPVCDFYEKF---DAVGREAPLAPGVYSI 57
S++ DG D R + S+ +R + E VCD+Y D L V +
Sbjct: 137 SQDGDGSAADARSAVMDELESIEERLEDLEEQNVCDYYRNNLTQDTDEFFGWLFEDVRTP 196
Query: 58 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFD 114
++ E LC Y L ++ I +VV +YH+LLD I + L R + VFD
Sbjct: 197 DEIYEYAERQELCGYELLKEGIEGVDLVVCNYHHLLDSTIREQFFRWLGRDPEDVIAVFD 256
Query: 115 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYAR-LVE--- 170
EAHN+++ + + + RT E A+ + + E D+A + + R LVE
Sbjct: 257 EAHNVEDAAREHATRTCSERTFESALEELADSDDPRAE----DAANVLSAFHRALVEIYE 312
Query: 171 -----GLRDAQSARETDVVLANPVLPDEILQEVV 199
G R+ TDV +AN D++ E +
Sbjct: 313 DSFGFGDREGVGENWTDVPIANDDRKDDLTLEFL 346
>gi|14521544|ref|NP_127020.1| DNA repair helicase rad3 [Pyrococcus abyssi GE5]
gi|5458763|emb|CAB50250.1| ERCC2/XPD/rad3 DNA repair helicase, TFIIH helicase beta subunit
homolog [Pyrococcus abyssi GE5]
gi|380742154|tpe|CCE70788.1| TPA: DNA repair helicase rad3 [Pyrococcus abyssi GE5]
Length = 637
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 50/226 (22%)
Query: 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKL 493
+FPY+ + P Q ++ ++ + ++E P+G GKT S+L+ ++ + + K+
Sbjct: 4 YFPYKTLRPHQDEFIELVRDVVKRGEKVIIEAPTGFGKTISVLAGVLPHAISFGY---KV 60
Query: 494 LYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIR 553
+Y +RT ++++V+EEL R+ E ++G+ SRK+LC+H S IR
Sbjct: 61 IYLARTHKQMDRVIEELKRI-------REIAKVSGIEFRSRKDLCLH---------SYIR 104
Query: 554 NYGQLLVDIACVVPDGVVCFFTSYL----YLESVFETRDDISVIR--------------N 595
+ Q +VC L Y E++ E RD + I
Sbjct: 105 TFAQ------DAYTSMIVCKSLKRLGKCKYFENLKEKRDKVKEIVEFFLENPSYPWEVIE 158
Query: 596 YGQLL----VDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNL 637
Y LL ++ V + SYLY+ V W Q +D L
Sbjct: 159 YSNLLELCPYEVTRKVGEKANVIVASYLYM---VNPWIRQAFLDGL 201
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 67 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA---RSSVVVFDEAHNIDNVC 123
L LCPY + R+ A ++V SY Y+++P I L +V+FDEAHN+ +
Sbjct: 163 LELCPYEVTRKVGEKANVIVASYLYMVNPWIRQAFLDGLGLEYSDLIVIFDEAHNLPDQA 222
Query: 124 VDSLSVRINRRTIEKAV 140
+ +LS R++ R++E+A+
Sbjct: 223 ISALSDRLSIRSVERAI 239
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 722 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA---RSSVVVFDEAHNIDNVC 778
L LCPY + R+ A ++V SY Y+++P I L +V+FDEAHN+ +
Sbjct: 163 LELCPYEVTRKVGEKANVIVASYLYMVNPWIRQAFLDGLGLEYSDLIVIFDEAHNLPDQA 222
Query: 779 VDSLSVRINRRTIEKAV 795
+ +LS R++ R++E+A+
Sbjct: 223 ISALSDRLSIRSVERAI 239
>gi|84997393|ref|XP_953418.1| helicase [Theileria annulata strain Ankara]
gi|65304414|emb|CAI76793.1| helicase, putative [Theileria annulata]
Length = 951
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I + E G+ CPYF ++ HA +++ Y+YLL P I + V ++ R S++V DEA
Sbjct: 230 IEDMVETGKNKHFCPYFSVKEGQEHADLILLPYNYLLSPDIRDAVDIDI-RDSILVIDEA 288
Query: 117 HNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLRE 163
HN + V + S I + I K + ++ K+ D ++ E
Sbjct: 289 HNAEQVAEEGASFEIKQTDIGKYIETLKRFGIFYKDYISEDPTRINE 335
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I + E G+ CPYF ++ HA +++ Y+YLL P I + V ++ R S++V DEA
Sbjct: 230 IEDMVETGKNKHFCPYFSVKEGQEHADLILLPYNYLLSPDIRDAVDIDI-RDSILVIDEA 288
Query: 772 HNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLRE 818
HN + V + S I + I K + ++ K+ D ++ E
Sbjct: 289 HNAEQVAEEGASFEIKQTDIGKYIETLKRFGIFYKDYISEDPTRINE 335
Score = 44.3 bits (103), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 425 GLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVA 481
G++ID + V FP+ Y Y Q +YM + K + + LLE P+GTGKT SL+ +A
Sbjct: 8 GVVIDGIDVKFPF-YPYRCQRSYMEHVIKTIKESKNALLESPTGTGKTLSLICSTLA 63
Score = 43.5 bits (101), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S F TR+ ++ I G +V VP GV+ FF SY + + W GI ++
Sbjct: 610 LSSTFNTRNKMNYITELGNAVVSFVKNVPAGVLVFFCSYNVMNYTTSVWKKIGIYSKIEM 669
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENI 687
K +++E +R V D +V +T+ + +R+K ENI
Sbjct: 670 YKKVYLE------ARPVENPEDSDVV-----PVTTMDIFNRYK--ENI 704
>gi|300175036|emb|CBK20347.2| unnamed protein product [Blastocystis hominis]
Length = 376
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 9/83 (10%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES---------VVASWYD 630
L S + R + V +YG LLV++A VVPDG++CFFTSY ++ + + W
Sbjct: 118 LSSKYTLRANNQVAVSYGSLLVEMARVVPDGIICFFTSYSHISNPFLIWNRCLFLCEWDA 177
Query: 631 QGIIDNLQKRKLLFIETQDALDS 653
G+I ++ KLL+IE++D +S
Sbjct: 178 HGVIRDIYNYKLLYIESRDINES 200
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
++ K DY +IFAD R+ D S+LP+WIQ+ L NLS E AV ++ + ++MA+
Sbjct: 291 IRNKNDYSFVIFADYRYDLVDHSSRLPEWIQQQLPPAHHNLSVEMAVITARTFFKKMAR 349
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 356 VLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSM 407
VL C D+ ++P+F F+ ++ITSGTLS LD+YPK+L F P++ S +
Sbjct: 23 VLKLICCDAGYVMQPLFAAFKHIIITSGTLS-LDLYPKLLQFHPLVAKSICI 73
>gi|402080753|gb|EJT75898.1| DEAD_2 domain-containing protein [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 936
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQ--------GIID 635
F+ R D ++I+ G +++ VVPDGVV FF SY YL+ V+ASW ++ I D
Sbjct: 649 FQKRRDKNMIQQLGTAILNTCSVVPDGVVVFFPSYGYLDEVIASWKERPSGPTGPPPIWD 708
Query: 636 NLQKRKLLFIETQDA 650
LQ +K +F E++
Sbjct: 709 RLQAKKAVFRESKGG 723
Score = 48.1 bits (113), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 13/168 (7%)
Query: 10 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVG-----REAPLAPGVYSITKLKEMG 64
++ RC L + K+G C F + +G R+ LA + I +G
Sbjct: 289 INDRCAELQTP------KSGSKGNKCPFVPNQENLGETHEFRDTALAT-LPDIEDAHRLG 341
Query: 65 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 124
+ L +CPY+ R AI A+I+ Y LL +L + SVVV DEAHNI +
Sbjct: 342 KSLRVCPYYATRTAIPGAEIITLPYPLLLQRSAREAFGIDL-KGSVVVIDEAHNIMDAVA 400
Query: 125 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL 172
+ + + +A + + + ++ + + AR V+GL
Sbjct: 401 GVHAAEVRLGDLRRAREMLSVYAKRFGKKLKGENRIMVGQVARAVQGL 448
Score = 48.1 bits (113), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 13/168 (7%)
Query: 665 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVG-----REAPLAPGVYSITKLKEMG 719
++ RC L + K+G C F + +G R+ LA + I +G
Sbjct: 289 INDRCAELQTP------KSGSKGNKCPFVPNQENLGETHEFRDTALAT-LPDIEDAHRLG 341
Query: 720 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 779
+ L +CPY+ R AI A+I+ Y LL +L + SVVV DEAHNI +
Sbjct: 342 KSLRVCPYYATRTAIPGAEIITLPYPLLLQRSAREAFGIDL-KGSVVVIDEAHNIMDAVA 400
Query: 780 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL 827
+ + + +A + + + ++ + + AR V+GL
Sbjct: 401 GVHAAEVRLGDLRRAREMLSVYAKRFGKKLKGENRIMVGQVARAVQGL 448
Score = 44.7 bits (104), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFET 586
F+ R D ++I+ G +++ VVPDGVV FF SY YL+ V +
Sbjct: 649 FQKRRDKNMIQQLGTAILNTCSVVPDGVVVFFPSYGYLDEVIAS 692
>gi|320034910|gb|EFW16853.1| ATP-dependent RNA helicase [Coccidioides posadasii str. Silveira]
Length = 905
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 105/229 (45%), Gaps = 26/229 (11%)
Query: 665 VDGRCHSLTSSSVRDRHK-----AGEN-IPVCDFYEKFDAVGREAPLAPGVYSITKLKEM 718
++ RC L SS+V HK + EN + + DF R+ LA V+ I + ++
Sbjct: 320 INERCLDLQSSNVLPEHKCPFAPSKENELAISDF--------RDHVLAE-VHDIEDIGKI 370
Query: 719 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 778
G+ G+CPY+ +R I H++IV Y LL + + L + V++ DEAHN+ +V
Sbjct: 371 GQRTGICPYYASRSVIGHSEIVTLPYQLLLQKSARDALDISL-KDHVIIIDEAHNLMDVI 429
Query: 779 VDSLSVRIN----RRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
+ SV ++ R +E+ + + LK A++ + + L +AR
Sbjct: 430 ANIHSVNVSLTQLRIGLEQLTIYARKYKARLKGKNRVYVAQVMRLLGSIAKYLESVLAAR 489
Query: 835 ETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
E + V P ++ GK G+ + +R + SKL + + Y+
Sbjct: 490 E---LREGAVDPSYLMSGK---GVDQINLHKLSRYLQESKLARKVDGYI 532
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 16/129 (12%)
Query: 10 VDGRCHSLTSSSVRDRHK-----AGEN-IPVCDFYEKFDAVGREAPLAPGVYSITKLKEM 63
++ RC L SS+V HK + EN + + DF R+ LA V+ I + ++
Sbjct: 320 INERCLDLQSSNVLPEHKCPFAPSKENELAISDF--------RDHVLAE-VHDIEDIGKI 370
Query: 64 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 123
G+ G+CPY+ +R I H++IV Y LL + + L + V++ DEAHN+ +V
Sbjct: 371 GQRTGICPYYASRSVIGHSEIVTLPYQLLLQKSARDALDISL-KDHVIIIDEAHNLMDVI 429
Query: 124 VDSLSVRIN 132
+ SV ++
Sbjct: 430 ANIHSVNVS 438
Score = 44.7 bits (104), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWY-------DQGIID 635
FE R+ ++I + G+ + +I PDGVV FF SY +L VV W + I+D
Sbjct: 660 TFEKRNSRAMIIDLGKTISEICKATPDGVVAFFPSYDFLNQVVEIWKQPCSNSGNPSILD 719
Query: 636 NLQKRKLLFIETQD-ALDSRSVSKERDGKIVDGRCHSLTS 674
+L K L E+++ A+++ ++ ++ I +G+ L S
Sbjct: 720 SLGLVKPLLYESKEKAMNTEALLQKYANFIDEGKGALLLS 759
>gi|149053741|gb|EDM05558.1| BRCA1 interacting protein C-terminal helicase 1 (predicted) [Rattus
norvegicus]
Length = 964
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 29 GENIPVCDFYEKFDAVGREAPLA-----PGVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G++ C FY + + L + I +L +GR+L CPY+ AR+ I A
Sbjct: 301 GKHGKSCYFYHGVHRISNQQTLQFLHGISKAWDIEELVSLGRKLKACPYYTARELIDSAD 360
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
I+ Y+YLLD +I + +L + VV+ DEAHNI+ ++ S +
Sbjct: 361 IIFCPYNYLLDSQIRESMDIKL-KEQVVILDEAHNIEECARETASYSV 407
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 684 GENIPVCDFYEKFDAVGREAPLA-----PGVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G++ C FY + + L + I +L +GR+L CPY+ AR+ I A
Sbjct: 301 GKHGKSCYFYHGVHRISNQQTLQFLHGISKAWDIEELVSLGRKLKACPYYTARELIDSAD 360
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
I+ Y+YLLD +I + +L + VV+ DEAHNI+ ++ S +
Sbjct: 361 IIFCPYNYLLDSQIRESMDIKL-KEQVVILDEAHNIEECARETASYSV 407
Score = 47.0 bits (110), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY---MN 484
I + + FP YP Q A M + + L++ HCLLE P+G+GK+ +LL +A+ +
Sbjct: 10 IGGVKIHFPCR-AYPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAWQQSLT 68
Query: 485 AHPLD 489
P+D
Sbjct: 69 GKPVD 73
>gi|353235657|emb|CCA67667.1| related to CHL1-protein of the DEAH box family [Piriformospora
indica DSM 11827]
Length = 769
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 585 ETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLF 644
+ + D +V+ GQ+L ++ +VPDG+V FF SY +L ++ A W G ++ L+ +K LF
Sbjct: 605 QQQKDPAVMDELGQILANLVNIVPDGMVVFFPSYNFLNALRARWGGNGTLERLKNKKKLF 664
Query: 645 IETQDA 650
E Q+
Sbjct: 665 FEPQEG 670
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Query: 7 GKIVDGRCHSLTSSSVRDR----HKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKE 62
G +D C L + R AG+ + D ++ A R+ I L +
Sbjct: 250 GGDLDEGCRELIQEKGKKRCPYLPPAGDISAMADLRDQILATPRD---------IEDLAQ 300
Query: 63 MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNV 122
+G+EL CPY+ +R+AI A++V Y+ LL + + +L +V++ DEAHN+ +
Sbjct: 301 LGKELKTCPYYGSRKAIKQAELVTLPYNLLLQKQARETLGVDLTDQTVII-DEAHNLIDT 359
Query: 123 CVDSLSVRINRRTIEKAVGNIQ 144
+ +V + ++K++ ++
Sbjct: 360 ILSIHTVSLPHSVLKKSLEQLR 381
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Query: 662 GKIVDGRCHSLTSSSVRDR----HKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKE 717
G +D C L + R AG+ + D ++ A R+ I L +
Sbjct: 250 GGDLDEGCRELIQEKGKKRCPYLPPAGDISAMADLRDQILATPRD---------IEDLAQ 300
Query: 718 MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNV 777
+G+EL CPY+ +R+AI A++V Y+ LL + + +L +V++ DEAHN+ +
Sbjct: 301 LGKELKTCPYYGSRKAIKQAELVTLPYNLLLQKQARETLGVDLTDQTVII-DEAHNLIDT 359
Query: 778 CVDSLSVRINRRTIEKAVGNIQ 799
+ +V + ++K++ ++
Sbjct: 360 ILSIHTVSLPHSVLKKSLEQLR 381
>gi|452208540|ref|YP_007488662.1| DNA repair helicase Rad3 [Natronomonas moolapensis 8.8.11]
gi|452084640|emb|CCQ37987.1| DNA repair helicase Rad3 [Natronomonas moolapensis 8.8.11]
Length = 722
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 83/208 (39%), Gaps = 31/208 (14%)
Query: 724 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVD 780
LC Y L ++ + +VV +YH+LLDP I + + R V VFDEAHN+ + D
Sbjct: 216 LCGYELLKEGMEGVDLVVCNYHHLLDPTIREQFFRWVGRDPEDIVAVFDEAHNVADSARD 275
Query: 781 SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVE-----GLRDAQSARE 835
+ + RTIE A+ ++ +E E RE E G R++
Sbjct: 276 HATRTLAERTIEGALDELEGVEDARAEPAANVVGAFREALVETYEDSFGFGERESIGEEW 335
Query: 836 TDVVLANPVLPDEILQG------KTDYGIMIFA--------DKRFARSDKRSKLPKWIQE 881
TDV + N D++ G +G + A D+R+ R+ K +
Sbjct: 336 TDVAIDNETGRDDLSVGFLRNYTGQGFGADLEAALALGEELDRRYERAYKEGE------- 388
Query: 882 YLTDNLTNLSTEEAVQLSKRWLRQMAQP 909
T T A +RW+ +P
Sbjct: 389 --TTTRKECPTLTAAGFIERWMESSVEP 414
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 8/134 (5%)
Query: 69 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVD 125
LC Y L ++ + +VV +YH+LLDP I + + R V VFDEAHN+ + D
Sbjct: 216 LCGYELLKEGMEGVDLVVCNYHHLLDPTIREQFFRWVGRDPEDIVAVFDEAHNVADSARD 275
Query: 126 SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVE-----GLRDAQSARE 180
+ + RTIE A+ ++ +E E RE E G R++
Sbjct: 276 HATRTLAERTIEGALDELEGVEDARAEPAANVVGAFREALVETYEDSFGFGERESIGEEW 335
Query: 181 TDVVLANPVLPDEI 194
TDV + N D++
Sbjct: 336 TDVAIDNETGRDDL 349
>gi|109488700|ref|XP_340870.3| PREDICTED: Fanconi anemia group J protein homolog [Rattus
norvegicus]
gi|109491562|ref|XP_001081096.1| PREDICTED: Fanconi anemia group J protein homolog [Rattus
norvegicus]
Length = 1166
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 29 GENIPVCDFYEKFDAVGREAPLA-----PGVYSITKLKEMGRELGLCPYFLARQAIIHAK 83
G++ C FY + + L + I +L +GR+L CPY+ AR+ I A
Sbjct: 301 GKHGKSCYFYHGVHRISNQQTLQFLHGISKAWDIEELVSLGRKLKACPYYTARELIDSAD 360
Query: 84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
I+ Y+YLLD +I + +L + VV+ DEAHNI+ ++ S +
Sbjct: 361 IIFCPYNYLLDSQIRESMDIKL-KEQVVILDEAHNIEECARETASYSV 407
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 684 GENIPVCDFYEKFDAVGREAPLA-----PGVYSITKLKEMGRELGLCPYFLARQAIIHAK 738
G++ C FY + + L + I +L +GR+L CPY+ AR+ I A
Sbjct: 301 GKHGKSCYFYHGVHRISNQQTLQFLHGISKAWDIEELVSLGRKLKACPYYTARELIDSAD 360
Query: 739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
I+ Y+YLLD +I + +L + VV+ DEAHNI+ ++ S +
Sbjct: 361 IIFCPYNYLLDSQIRESMDIKL-KEQVVILDEAHNIEECARETASYSV 407
Score = 47.0 bits (110), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY---MN 484
I + + FP YP Q A M + + L++ HCLLE P+G+GK+ +LL +A+ +
Sbjct: 10 IGGVKIHFPCR-AYPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAWQQSLT 68
Query: 485 AHPLD 489
P+D
Sbjct: 69 GKPVD 73
>gi|440302532|gb|ELP94839.1| DEAD_2 protein, partial [Entamoeba invadens IP1]
Length = 653
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 17/121 (14%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
DDL FPY YP+Q + ++KA+ H LLE P+GTGKT LL ++
Sbjct: 87 FDDLSTTFPYP-PYPQQVQMLSAIQKAIADGKHLLLESPTGTGKTLVLLHAALSS----- 140
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
DV +++Y SRT ++ +VV E +L G++L+SR+ C++ + D
Sbjct: 141 -DVHRIVYTSRTHNQLAQVVRECRKL----------KPTKGVILASRELYCVYDTIKDMD 189
Query: 548 D 548
+
Sbjct: 190 N 190
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 23/129 (17%)
Query: 35 CDFYEKFDAVGREAPLAPG-------VYSITK--------LKEMGRELGLCPYFLARQAI 79
C F FD G LAP VYSIT+ L ++ +E +CPY ++ +
Sbjct: 211 CPFRPHFDQFG----LAPDTLAKFEKVYSITRGLLVEHTELVQICKENKVCPYHYSKWVV 266
Query: 80 IHAKIVVYSYHYLLDPKIANVVS----KELARSSVVVFDEAHNIDNVCVDSLSVRINRRT 135
++V+ Y+++ +P I + S + +V DEAHN ++ +D++S
Sbjct: 267 TKVRLVLCPYNFITNPSIRSTSSIFFMENENDECALVLDEAHNAEDSLMDAMSFDFGEDI 326
Query: 136 IEKAVGNIQ 144
+++ V N+Q
Sbjct: 327 MKRVVLNVQ 335
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 23/129 (17%)
Query: 690 CDFYEKFDAVGREAPLAPG-------VYSITK--------LKEMGRELGLCPYFLARQAI 734
C F FD G LAP VYSIT+ L ++ +E +CPY ++ +
Sbjct: 211 CPFRPHFDQFG----LAPDTLAKFEKVYSITRGLLVEHTELVQICKENKVCPYHYSKWVV 266
Query: 735 IHAKIVVYSYHYLLDPKIANVVS----KELARSSVVVFDEAHNIDNVCVDSLSVRINRRT 790
++V+ Y+++ +P I + S + +V DEAHN ++ +D++S
Sbjct: 267 TKVRLVLCPYNFITNPSIRSTSSIFFMENENDECALVLDEAHNAEDSLMDAMSFDFGEDI 326
Query: 791 IEKAVGNIQ 799
+++ V N+Q
Sbjct: 327 MKRVVLNVQ 335
>gi|302889483|ref|XP_003043627.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256724544|gb|EEU37914.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 863
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 565 VVPDGVVCFFT------SYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 618
V+P +C +T E F+ R D +I G ++++ +VPDGVV FF SY
Sbjct: 591 VIPPENLCVWTLASSRPGMPPFEFSFQKRSDPEMITQLGLAILNLCSLVPDGVVIFFPSY 650
Query: 619 LYLESVVASWYD------QGIIDNLQKRKLLFIETQDA 650
YL+ VVA+W Q I + L RK LF E++ A
Sbjct: 651 GYLDEVVAAWQKSHGANAQPIWERLATRKALFKESKGA 688
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 24/176 (13%)
Query: 8 KIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVG-----REAPLAPGVYSITKLKE 62
+ ++ RC L + K+G+ C F K D + R++ LA + I L
Sbjct: 272 QAINDRCAEL------QKPKSGKK---CPFVPKEDLLSETHQFRDSALAT-LPDIEDLHH 321
Query: 63 MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNV 122
+G+ L +CPY+ +R A+ A+I+ Y LL + + +L SVV+ DEAHNI +
Sbjct: 322 LGKSLSVCPYYASRTALPGAEIITLPYPLLLQKSARDALGVKL-EGSVVIIDEAHNIMDA 380
Query: 123 CVDSLSVRINRRTIEKAVGN----IQTLEGTLKEMKEADSAKLREEYARLVEGLRD 174
+ + I + + G ++ LK + + ++ R++EGL +
Sbjct: 381 VANVHAAEIRLSDLRRGRGMLGVYVKRFGKKLKGVNRVNVGRV----GRVIEGLSE 432
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 24/176 (13%)
Query: 663 KIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVG-----REAPLAPGVYSITKLKE 717
+ ++ RC L + K+G+ C F K D + R++ LA + I L
Sbjct: 272 QAINDRCAEL------QKPKSGKK---CPFVPKEDLLSETHQFRDSALAT-LPDIEDLHH 321
Query: 718 MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNV 777
+G+ L +CPY+ +R A+ A+I+ Y LL + + +L SVV+ DEAHNI +
Sbjct: 322 LGKSLSVCPYYASRTALPGAEIITLPYPLLLQKSARDALGVKL-EGSVVIIDEAHNIMDA 380
Query: 778 CVDSLSVRINRRTIEKAVGN----IQTLEGTLKEMKEADSAKLREEYARLVEGLRD 829
+ + I + + G ++ LK + + ++ R++EGL +
Sbjct: 381 VANVHAAEIRLSDLRRGRGMLGVYVKRFGKKLKGVNRVNVGRV----GRVIEGLSE 432
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
F+ R D +I G ++++ +VPDGVV FF SY YL+ V
Sbjct: 616 FQKRSDPEMITQLGLAILNLCSLVPDGVVIFFPSYGYLDEV 656
>gi|336252772|ref|YP_004595879.1| DEAD_2 domain-containing protein [Halopiger xanaduensis SH-6]
gi|335336761|gb|AEH36000.1| DEAD_2 domain protein [Halopiger xanaduensis SH-6]
Length = 727
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 91/218 (41%), Gaps = 24/218 (11%)
Query: 662 GKIVDGRCHSLTS-SSVRDRHKAGENIPVCDFYEKF---DAVGREAPLAPGVYSITKLKE 717
G D R + ++ +R + E+ VCD+Y D L V + + E
Sbjct: 151 GSAADARSAVMDELENIEERLEDLEDQNVCDYYRNNLTQDTDDFFGWLFEDVRTPDDIYE 210
Query: 718 MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNI 774
+ LC Y L ++ I +VV +YH+LLDP I + L R + VFDEAHN+
Sbjct: 211 YAEQQQLCGYELLKEGIEGVDLVVCNYHHLLDPMIREQFFRWLGRDPEDVIAVFDEAHNV 270
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYAR-LVE-------- 825
++ D + + RT E A+ + + E D+A + + R LVE
Sbjct: 271 EDAARDHATQHCSERTFESALDELADADDPRSE----DAANVLSAFHRALVEIYEDSFGF 326
Query: 826 GLRDAQSARETDVVLANPVLPD----EILQGKTDYGIM 859
G R+ DV +AN D E LQ + GI
Sbjct: 327 GEREQIGENWADVPIANEDRKDDLTLEFLQRYSGQGIQ 364
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 20/209 (9%)
Query: 7 GKIVDGRCHSLTS-SSVRDRHKAGENIPVCDFYEKF---DAVGREAPLAPGVYSITKLKE 62
G D R + ++ +R + E+ VCD+Y D L V + + E
Sbjct: 151 GSAADARSAVMDELENIEERLEDLEDQNVCDYYRNNLTQDTDDFFGWLFEDVRTPDDIYE 210
Query: 63 MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNI 119
+ LC Y L ++ I +VV +YH+LLDP I + L R + VFDEAHN+
Sbjct: 211 YAEQQQLCGYELLKEGIEGVDLVVCNYHHLLDPMIREQFFRWLGRDPEDVIAVFDEAHNV 270
Query: 120 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYAR-LVE-------- 170
++ D + + RT E A+ + + E D+A + + R LVE
Sbjct: 271 EDAARDHATQHCSERTFESALDELADADDPRSE----DAANVLSAFHRALVEIYEDSFGF 326
Query: 171 GLRDAQSARETDVVLANPVLPDEILQEVV 199
G R+ DV +AN D++ E +
Sbjct: 327 GEREQIGENWADVPIANEDRKDDLTLEFL 355
>gi|448664254|ref|ZP_21684057.1| helicase [Haloarcula amylolytica JCM 13557]
gi|445774899|gb|EMA25913.1| helicase [Haloarcula amylolytica JCM 13557]
Length = 725
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 22/272 (8%)
Query: 647 TQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLA 706
+ +A+++R+ E + D R T S D + + +FY A L
Sbjct: 149 SSEAMEARNAVVEELRDLQDEREEIETERSTCDHYYRNLTVDTSEFY---------AWLF 199
Query: 707 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS-- 764
V + + E + GLC Y L ++ + +VV +YH+LLDP I + R
Sbjct: 200 DDVRTPDDVYEYAHQQGLCGYELLKEGMDGVDLVVCNYHHLLDPTIREQFFNWIGRDPED 259
Query: 765 -VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK----EADSAKLREE 819
+ VFDEAHN+++ D + T+++A+ + + E + E L E
Sbjct: 260 IIAVFDEAHNVESAARDHARRTLTENTLDQALEELDSEEDARTDAAANVIETFRDALVEA 319
Query: 820 YARLVE-GLRDAQSARETDVVLANPVLPDEI----LQGKTDYGIMIFADKRFARS-DKRS 873
Y E G R A D+ +AN D++ LQG T G D+ D +
Sbjct: 320 YEDSFEFGGRAAVDEHWDDITIANDDRKDDLTLAFLQGYTGPGFHEELDRALELGRDLDA 379
Query: 874 KLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQ 905
+ K +E D T +A WL +
Sbjct: 380 RYQKAFKEGDLDTRKECQTLQAAGFISDWLDE 411
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 14/117 (11%)
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHN 118
E + GLC Y L ++ + +VV +YH+LLDP I + R + VFDEAHN
Sbjct: 210 EYAHQQGLCGYELLKEGMDGVDLVVCNYHHLLDPTIREQFFNWIGRDPEDIIAVFDEAHN 269
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDA 175
+++ D RRT+ + TL+ L+E+ + A+ + A ++E RDA
Sbjct: 270 VESAARDHA-----RRTLTE-----NTLDQALEELDSEEDART-DAAANVIETFRDA 315
>gi|328857293|gb|EGG06410.1| hypothetical protein MELLADRAFT_86596 [Melampsora larici-populina
98AG31]
Length = 50
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 33/47 (70%)
Query: 355 PVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVI 401
PV CLD+S+AIKPVFD VVITSGT SPLDMY K L F+ +
Sbjct: 3 PVFKLTCLDTSIAIKPVFDGLSRVVITSGTSSPLDMYFKKLEFETAV 49
>gi|357129541|ref|XP_003566420.1| PREDICTED: probable ATP-dependent RNA helicase DDX11-like
[Brachypodium distachyon]
Length = 932
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 576 SYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIID 635
S + + F +R ++I G+ L +I +VPDGVV FFTSY Y + V +W G I
Sbjct: 660 SGMEFDFSFGSRRSPAMIEELGRFLCNIVTIVPDGVVMFFTSYEYEKQVYDAWTASGTIS 719
Query: 636 NLQKRKLLFIETQDALD 652
+ K+K +F E +++++
Sbjct: 720 KISKKKCVFREPKNSVN 736
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 51 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 110
A G I L ++G+++G CPY+ R + A +VV Y LL + L ++SV
Sbjct: 353 ANGALDIEDLAQIGKKIGTCPYYGVRDMVPAADLVVLPYQSLLLKSARESLGLNL-KNSV 411
Query: 111 VVFDEAHNIDNVCVDSLSVRINRR 134
++ DEAHN+ DSL+ N +
Sbjct: 412 IIIDEAHNL----ADSLTSMYNSK 431
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 706 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 765
A G I L ++G+++G CPY+ R + A +VV Y LL + L ++SV
Sbjct: 353 ANGALDIEDLAQIGKKIGTCPYYGVRDMVPAADLVVLPYQSLLLKSARESLGLNL-KNSV 411
Query: 766 VVFDEAHNIDNVCVDSLSVRINRR 789
++ DEAHN+ DSL+ N +
Sbjct: 412 IIIDEAHNL----ADSLTSMYNSK 431
Score = 43.9 bits (102), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
F +R ++I G+ L +I +VPDGVV FFTSY Y + V++
Sbjct: 668 FGSRRSPAMIEELGRFLCNIVTIVPDGVVMFFTSYEYEKQVYD 710
>gi|195340550|ref|XP_002036876.1| GM12432 [Drosophila sechellia]
gi|229891628|sp|B4I0K4.1|RTEL1_DROSE RecName: Full=Regulator of telomere elongation helicase 1 homolog
gi|194130992|gb|EDW53035.1| GM12432 [Drosophila sechellia]
Length = 966
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 65/155 (41%), Gaps = 48/155 (30%)
Query: 427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM--- 483
+I +PV FP+E YP Q AYM ++ L + +LE P+GTGKT SLL +A++
Sbjct: 5 LIAGIPVHFPFE-PYPVQRAYMEKVIHCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTR 63
Query: 484 ------------------------------------NAHPLDVTKLLYCSRTVPEIEKVV 507
A+ V K++Y SRT ++ + +
Sbjct: 64 QSEHQMQMVKMEKADFSGIGGGAPGGDLSELAKTMGRANNWGVPKVIYASRTHSQLTQAM 123
Query: 508 EELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
EL R NM +VL SR LCIH E
Sbjct: 124 RELKR--------TAYANMRSVVLGSRDQLCIHPE 150
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S + RD+ + + GQ ++++A +VPDG++ FF SY L V +W G+ ++
Sbjct: 507 LISNYANRDNPKYVSSLGQTILNVARIVPDGLLVFFPSYPMLNKCVDAWQASGLWADISC 566
Query: 640 RKLLFIE 646
+K +F+E
Sbjct: 567 KKPIFLE 573
Score = 43.5 bits (101), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 20/109 (18%)
Query: 51 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 110
P + I L ++G+ L +CPYF +R+ KI EL +++
Sbjct: 190 GPTIMDIEDLVKVGQRLKICPYFASRELARANKI-------------------ELG-NTI 229
Query: 111 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSA 159
V+ DEAHNI+ +C + SV+I + + +I + + D A
Sbjct: 230 VILDEAHNIEKICEEYASVQIKSSDVAMTIEDITHIRQVFASGESQDMA 278
Score = 43.5 bits (101), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 20/109 (18%)
Query: 706 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 765
P + I L ++G+ L +CPYF +R+ KI EL +++
Sbjct: 190 GPTIMDIEDLVKVGQRLKICPYFASRELARANKI-------------------ELG-NTI 229
Query: 766 VVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSA 814
V+ DEAHNI+ +C + SV+I + + +I + + D A
Sbjct: 230 VILDEAHNIEKICEEYASVQIKSSDVAMTIEDITHIRQVFASGESQDMA 278
>gi|390961806|ref|YP_006425640.1| putative Rad3-related DNA helicase [Thermococcus sp. CL1]
gi|390520114|gb|AFL95846.1| putative Rad3-related DNA helicase [Thermococcus sp. CL1]
Length = 652
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 10/108 (9%)
Query: 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKL 493
+FPYE + P Q ++ + + + + ++E P+G GKT S+L+ I+ K+
Sbjct: 10 YFPYESLRPNQREFIELVAETVRNGENAIIEAPTGFGKTVSVLAGILPQAKEMGY---KV 66
Query: 494 LYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHS 541
LY +RT ++++V+EEL + N + ++G+ L SRK LC+H+
Sbjct: 67 LYLARTHRQMDRVIEELKVI-------NRKAKVSGVELRSRKELCLHT 107
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 12/136 (8%)
Query: 67 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKI-ANVVSKELARSS--VVVFDEAHNIDNVC 123
L LCPY L ++ A ++V SY YLL P I N +S S +VVFDEAHN+ +
Sbjct: 169 LELCPYDLTKRMAEKADVIVASYLYLLSPSIRENFISSLDVDYSDLIVVFDEAHNLPDQA 228
Query: 124 VDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDV 183
+ +LS RI+ T+ +A+ E E + A + R +E L + A
Sbjct: 229 ISALSDRISINTVNRAIKEAD-------EYNEHEIANFLSIFGRGLEILFQEKLASRD-- 279
Query: 184 VLANPVLPDEILQEVV 199
V PV P+ + VV
Sbjct: 280 VQETPVQPELVFSHVV 295
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 722 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKI-ANVVSKELARSS--VVVFDEAHNIDNVC 778
L LCPY L ++ A ++V SY YLL P I N +S S +VVFDEAHN+ +
Sbjct: 169 LELCPYDLTKRMAEKADVIVASYLYLLSPSIRENFISSLDVDYSDLIVVFDEAHNLPDQA 228
Query: 779 VDSLSVRINRRTIEKAV 795
+ +LS RI+ T+ +A+
Sbjct: 229 ISALSDRISINTVNRAI 245
>gi|399218668|emb|CCF75555.1| unnamed protein product [Babesia microti strain RI]
Length = 838
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 431 LPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDV 490
+ V FPY+ IY Q + + ++++ + L+E P+GTGKT LL +AY+ +
Sbjct: 11 IDVQFPYK-IYEPQKLLIEAIIRSIEYGQNALIESPTGTGKTLCLLCASLAYLCDKRIPG 69
Query: 491 TKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
K++Y +RT ++ + E ++ YY + EI + +L SR LCIHS+
Sbjct: 70 LKIIYTTRTHGQLNHFINEFKKV-PYYDRL-REIGINATILGSRDKLCIHSQ 119
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 9/172 (5%)
Query: 5 RDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVG-REAPLAPGVYSITKLKEM 63
RD + +C + +++ KA + C +Y + + + V + L M
Sbjct: 111 RDKLCIHSQCSKMKGNALDGYCKALVHTRTCTYYNGYRSKEYNNLNILMDVMDVEDLTSM 170
Query: 64 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 123
G++ G CP+++ R+A + ++ Y+YL I + + +L ++++ DEAHNID+
Sbjct: 171 GKKYGFCPFYVMREAHKTSNFILMPYNYLFCQTIRDSIELDL-NDAIIIIDEAHNIDDFA 229
Query: 124 VDSLSVRINRRTIEKAVGNIQTLEGTLKE---MKEADS----AKLREEYARL 168
+S I + + +++ ++ + T+ E KE D KL YA L
Sbjct: 230 ERVMSFNIYQMDVIRSIDFLKRIITTVNEDMYNKEKDDNPYLNKLLSLYATL 281
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 9/172 (5%)
Query: 660 RDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVG-REAPLAPGVYSITKLKEM 718
RD + +C + +++ KA + C +Y + + + V + L M
Sbjct: 111 RDKLCIHSQCSKMKGNALDGYCKALVHTRTCTYYNGYRSKEYNNLNILMDVMDVEDLTSM 170
Query: 719 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 778
G++ G CP+++ R+A + ++ Y+YL I + + +L ++++ DEAHNID+
Sbjct: 171 GKKYGFCPFYVMREAHKTSNFILMPYNYLFCQTIRDSIELDL-NDAIIIIDEAHNIDDFA 229
Query: 779 VDSLSVRINRRTIEKAVGNIQTLEGTLKE---MKEADS----AKLREEYARL 823
+S I + + +++ ++ + T+ E KE D KL YA L
Sbjct: 230 ERVMSFNIYQMDVIRSIDFLKRIITTVNEDMYNKEKDDNPYLNKLLSLYATL 281
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 36/75 (48%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L S + TR I G LL VP G++CFF SY + + W + GI NL
Sbjct: 505 LISTYSTRSSHEYIVKLGILLKLFVKSVPGGILCFFPSYTNMNETIEVWKNTGIYHNLYS 564
Query: 640 RKLLFIETQDALDSR 654
KL+FIE + DS
Sbjct: 565 YKLIFIEVVKSTDSN 579
>gi|426227064|ref|XP_004007648.1| PREDICTED: LOW QUALITY PROTEIN: putative ATP-dependent RNA helicase
DDX11-like protein 8-like [Ovis aries]
Length = 884
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDGV----VCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD + +C S L+ ++ R ++ G++L ++ VVP GV
Sbjct: 642 VVEFSCGHVIPPDHILPLIICSGPSNQMLDFTYQKRGLPQMMDETGRILCNLCNVVPGGV 701
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCFF SY Y V A W G++ L RK +F E + A
Sbjct: 702 VCFFPSYEYQHQVCAHWEKSGLLARLTIRKRIFQEPKKA 740
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 35 CDFY--EKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYL 92
C FY E+ + R+ LA GV + +L +G+E CPY+ R AI A++VV Y L
Sbjct: 311 CPFYSHERLQLL-RDEVLA-GVKDVEQLVALGKEARACPYYGGRFAIPAAQLVVLPYQML 368
Query: 93 LDPKIANVVSKELARSSVVVFDEAHN-IDNVC-VDSLSVR 130
L L + VVV DEAHN ID + + S+ VR
Sbjct: 369 LHAPTRQAAGIRL-QGQVVVIDEAHNLIDTITNIHSMEVR 407
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 690 CDFY--EKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYL 747
C FY E+ + R+ LA GV + +L +G+E CPY+ R AI A++VV Y L
Sbjct: 311 CPFYSHERLQLL-RDEVLA-GVKDVEQLVALGKEARACPYYGGRFAIPAAQLVVLPYQML 368
Query: 748 LDPKIANVVSKELARSSVVVFDEAHN-IDNVC-VDSLSVR 785
L L + VVV DEAHN ID + + S+ VR
Sbjct: 369 LHAPTRQAAGIRL-QGQVVVIDEAHNLIDTITNIHSMEVR 407
>gi|328714717|ref|XP_001943091.2| PREDICTED: Fanconi anemia group J protein homolog isoform 1
[Acyrthosiphon pisum]
Length = 918
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 14 CHSLTSSSVRDRH--KAGENIPVCDFYE----KFDAVGREAPLA-PGVYSITKLKEMGRE 66
C L R R+ K I C +Y+ K G+ A V+ I + +G
Sbjct: 273 CRDLLDPKARRRNSIKFRRTIDRCSYYDNGGVKISTYGQLAKFGVESVWDIEDIVRLGIS 332
Query: 67 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 126
CPY+ R + A+IV Y+Y++DP I N ++ +L + V++ DEAHNI++ C ++
Sbjct: 333 KKSCPYYGTRLLLKTAEIVFCPYNYIIDPVIRNTMNLKL-KGHVIIVDEAHNIEDQCREA 391
Query: 127 LSVRINRRTIEKAVGNIQTL 146
S+++++ + A + + +
Sbjct: 392 ASLQLDQTNMNLAKADCEKV 411
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 669 CHSLTSSSVRDRH--KAGENIPVCDFYE----KFDAVGREAPLA-PGVYSITKLKEMGRE 721
C L R R+ K I C +Y+ K G+ A V+ I + +G
Sbjct: 273 CRDLLDPKARRRNSIKFRRTIDRCSYYDNGGVKISTYGQLAKFGVESVWDIEDIVRLGIS 332
Query: 722 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 781
CPY+ R + A+IV Y+Y++DP I N ++ +L + V++ DEAHNI++ C ++
Sbjct: 333 KKSCPYYGTRLLLKTAEIVFCPYNYIIDPVIRNTMNLKL-KGHVIIVDEAHNIEDQCREA 391
Query: 782 LSVRINRRTIEKAVGNIQTL 801
S+++++ + A + + +
Sbjct: 392 ASLQLDQTNMNLAKADCEKV 411
Score = 43.9 bits (102), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 407 MTLARPCLLPMVRENYAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMP 466
M+ A+P P+ Y +G + ++PV YP Q + M ++ + + +CLLE P
Sbjct: 1 MSNAKPDDRPLF--TYTIGGVKIEMPV-----RPYPSQVSMMDKVIRGCQRQQNCLLESP 53
Query: 467 SGTGKTTSLLSLIVAYMNAHPLDVTKL 493
+G+GKT +LL +A+ A + KL
Sbjct: 54 TGSGKTLALLCSALAWQKAEKARLEKL 80
Score = 43.9 bits (102), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 597 GQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
G++L D+ VP GV+CF SY+ +E + + W G ++ L++ K++ E
Sbjct: 700 GKVLWDVCAAVPHGVLCFMPSYMLMEKLYSRWQVTGQLNRLKQIKVVMCE 749
>gi|328714715|ref|XP_003245432.1| PREDICTED: Fanconi anemia group J protein homolog isoform 2
[Acyrthosiphon pisum]
Length = 912
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 14 CHSLTSSSVRDRH--KAGENIPVCDFYE----KFDAVGREAPLA-PGVYSITKLKEMGRE 66
C L R R+ K I C +Y+ K G+ A V+ I + +G
Sbjct: 267 CRDLLDPKARRRNSIKFRRTIDRCSYYDNGGVKISTYGQLAKFGVESVWDIEDIVRLGIS 326
Query: 67 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 126
CPY+ R + A+IV Y+Y++DP I N ++ +L + V++ DEAHNI++ C ++
Sbjct: 327 KKSCPYYGTRLLLKTAEIVFCPYNYIIDPVIRNTMNLKL-KGHVIIVDEAHNIEDQCREA 385
Query: 127 LSVRINRRTIEKAVGNIQTL 146
S+++++ + A + + +
Sbjct: 386 ASLQLDQTNMNLAKADCEKV 405
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 669 CHSLTSSSVRDRH--KAGENIPVCDFYE----KFDAVGREAPLA-PGVYSITKLKEMGRE 721
C L R R+ K I C +Y+ K G+ A V+ I + +G
Sbjct: 267 CRDLLDPKARRRNSIKFRRTIDRCSYYDNGGVKISTYGQLAKFGVESVWDIEDIVRLGIS 326
Query: 722 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 781
CPY+ R + A+IV Y+Y++DP I N ++ +L + V++ DEAHNI++ C ++
Sbjct: 327 KKSCPYYGTRLLLKTAEIVFCPYNYIIDPVIRNTMNLKL-KGHVIIVDEAHNIEDQCREA 385
Query: 782 LSVRINRRTIEKAVGNIQTL 801
S+++++ + A + + +
Sbjct: 386 ASLQLDQTNMNLAKADCEKV 405
Score = 43.9 bits (102), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 407 MTLARPCLLPMVRENYAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMP 466
M+ A+P P+ Y +G + ++PV YP Q + M ++ + + +CLLE P
Sbjct: 1 MSNAKPDDRPLF--TYTIGGVKIEMPV-----RPYPSQVSMMDKVIRGCQRQQNCLLESP 53
Query: 467 SGTGKTTSLLSLIVAYMNAHPLDVTKL 493
+G+GKT +LL +A+ A + KL
Sbjct: 54 TGSGKTLALLCSALAWQKAEKARLEKL 80
Score = 43.9 bits (102), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 597 GQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
G++L D+ VP GV+CF SY+ +E + + W G ++ L++ K++ E
Sbjct: 694 GKVLWDVCAAVPHGVLCFMPSYMLMEKLYSRWQVTGQLNRLKQIKVVMCE 743
>gi|303310525|ref|XP_003065274.1| DNA repair helicase family protein [Coccidioides posadasii C735
delta SOWgp]
gi|240104936|gb|EER23129.1| DNA repair helicase family protein [Coccidioides posadasii C735
delta SOWgp]
Length = 864
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 105/229 (45%), Gaps = 26/229 (11%)
Query: 665 VDGRCHSLTSSSVRDRHK-----AGEN-IPVCDFYEKFDAVGREAPLAPGVYSITKLKEM 718
++ RC L SS+V HK + EN + + DF R+ LA V+ I + ++
Sbjct: 279 INERCLDLQSSNVLPEHKCPFAPSKENELAISDF--------RDHVLAE-VHDIEDIGKI 329
Query: 719 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 778
G+ G+CPY+ +R I H++IV Y LL + + L + V++ DEAHN+ +V
Sbjct: 330 GQRTGICPYYASRSVIGHSEIVTLPYQLLLQKSARDALDISL-KDHVIIIDEAHNLMDVI 388
Query: 779 VDSLSVRIN----RRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
+ SV ++ R +E+ + + LK A++ + + L +AR
Sbjct: 389 ANIHSVNVSLTQLRIGLEQLTIYARKYKARLKGKNRVYVAQVMRLLGSIAKYLESVLAAR 448
Query: 835 ETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
E + V P ++ GK G+ + +R + SKL + + Y+
Sbjct: 449 E---LREGAVDPSYLMSGK---GVDQINLHKLSRYLQESKLARKVDGYI 491
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 16/129 (12%)
Query: 10 VDGRCHSLTSSSVRDRHK-----AGEN-IPVCDFYEKFDAVGREAPLAPGVYSITKLKEM 63
++ RC L SS+V HK + EN + + DF R+ LA V+ I + ++
Sbjct: 279 INERCLDLQSSNVLPEHKCPFAPSKENELAISDF--------RDHVLAE-VHDIEDIGKI 329
Query: 64 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 123
G+ G+CPY+ +R I H++IV Y LL + + L + V++ DEAHN+ +V
Sbjct: 330 GQRTGICPYYASRSVIGHSEIVTLPYQLLLQKSARDALDISL-KDHVIIIDEAHNLMDVI 388
Query: 124 VDSLSVRIN 132
+ SV ++
Sbjct: 389 ANIHSVNVS 397
Score = 44.7 bits (104), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWY-------DQGIID 635
FE R+ ++I + G+ + +I PDGVV FF SY +L VV W + I+D
Sbjct: 619 TFEKRNSRAMIIDLGKTISEICKATPDGVVAFFPSYDFLNQVVEIWKQPCSNSGNPSILD 678
Query: 636 NLQKRKLLFIETQD-ALDSRSVSKERDGKIVDGRCHSLTS 674
+L K L E+++ A+++ ++ ++ I +G+ L S
Sbjct: 679 SLGLVKPLLYESKEKAMNTEALLQKYANFIDEGKGALLLS 718
>gi|432091451|gb|ELK24533.1| Putative ATP-dependent RNA helicase DDX11-like protein 8 [Myotis
davidii]
Length = 872
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
LV+ +C + PD V+C S LE + R+ ++ G++L ++ VVP GV
Sbjct: 610 LVEFSCGHVIPPDNILPLVLCSGPSNQQLEFTYLKRELPQMMDETGRILCNLCNVVPGGV 669
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHS 671
+CFF SY Y V A W G++ L RK +F E + A V E I +CH
Sbjct: 670 ICFFPSYEYQRQVHAHWDKSGLLARLAVRKKIFQEPKRANQVEQVLTEYSRCI---QCHG 726
Query: 672 LTSSSV 677
V
Sbjct: 727 QAGGMV 732
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 8 KIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFYEKFDAVGREAPLAPGVYSIT 58
++++ RC L S + +A + P C FY + + V I
Sbjct: 244 QLINDRCMELQRSRHESKSRAEDQEPKRKRQAPQAACPFYSHRHLQLLQDQVLLEVKDIE 303
Query: 59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
+L +G+E G CPY+ +R AI A++VV Y LL L + VV+ DEAHN
Sbjct: 304 QLVALGKEAGACPYYGSRFAIPAAQVVVLPYQMLLHTATRQATGIRL-QGQVVIIDEAHN 362
Query: 119 I 119
+
Sbjct: 363 L 363
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 663 KIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFYEKFDAVGREAPLAPGVYSIT 713
++++ RC L S + +A + P C FY + + V I
Sbjct: 244 QLINDRCMELQRSRHESKSRAEDQEPKRKRQAPQAACPFYSHRHLQLLQDQVLLEVKDIE 303
Query: 714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
+L +G+E G CPY+ +R AI A++VV Y LL L + VV+ DEAHN
Sbjct: 304 QLVALGKEAGACPYYGSRFAIPAAQVVVLPYQMLLHTATRQATGIRL-QGQVVIIDEAHN 362
Query: 774 I 774
+
Sbjct: 363 L 363
>gi|29612643|gb|AAH49929.1| Ddx11 protein, partial [Mus musculus]
Length = 443
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDGV----VCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD + +C S LE ++ R+ ++ G++L ++ VVP GV
Sbjct: 179 VVEFSCGHVIPPDNILPLIICSGPSNQQLEFTYQRRELPQMMEETGRILCNLCNVVPGGV 238
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCF SY YL V A W G++ L RK +F E + A
Sbjct: 239 VCFLPSYEYLRQVHAHWDKTGLLTRLSVRKKIFQEPKRA 277
>gi|71018229|ref|XP_759345.1| hypothetical protein UM03198.1 [Ustilago maydis 521]
gi|46099195|gb|EAK84428.1| hypothetical protein UM03198.1 [Ustilago maydis 521]
Length = 1496
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 11/98 (11%)
Query: 558 LLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTS 617
L+V + P G L E F++RD++ +I G+ LV++ +VP G+V F S
Sbjct: 674 LMVSVLSASPKG--------LPFEFKFDSRDNVELIDELGRTLVNVCNIVPAGLVVFVPS 725
Query: 618 YLYLESVVASWYDQ---GIIDNLQKRKLLFIETQDALD 652
Y +L+ ++A W D G++ L +K +FIE + ++
Sbjct: 726 YAFLDKLMARWKDAASGGLLQRLGSKKKIFIEPKTTME 763
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 18/175 (10%)
Query: 652 DSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGR-------EAP 704
D + + + + + ++ RC L + K G+ C FD GR +A
Sbjct: 296 DVQRIGRNKGSEAMNERCIELI------KGKTGKT--KCSSLPPFDQTGRSRILEFRDAA 347
Query: 705 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 764
+A V I L ++G++ CPYF AR + A+++ Y+ LL N + L
Sbjct: 348 MAE-VGDIEDLVQLGKQTNTCPYFAARSSAKQAELITLPYNLLLQKDARNALGISL-EGC 405
Query: 765 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT-LEGTLKEMKEADSAKLRE 818
+V+ DEAHN+ + + + SV I+ + I +A I T L+ +K ++ LR+
Sbjct: 406 IVLVDEAHNLIDTILSTHSVTIDSQQIAQASEQIDTYLDKFALRLKGSNEQNLRK 460
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 10/137 (7%)
Query: 35 CDFYEKFDAVGR-------EAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
C FD GR +A +A V I L ++G++ CPYF AR + A+++
Sbjct: 326 CSSLPPFDQTGRSRILEFRDAAMAE-VGDIEDLVQLGKQTNTCPYFAARSSAKQAELITL 384
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT-L 146
Y+ LL N + L +V+ DEAHN+ + + + SV I+ + I +A I T L
Sbjct: 385 PYNLLLQKDARNALGISL-EGCIVLVDEAHNLIDTILSTHSVTIDSQQIAQASEQIDTYL 443
Query: 147 EGTLKEMKEADSAKLRE 163
+ +K ++ LR+
Sbjct: 444 DKFALRLKGSNEQNLRK 460
Score = 44.3 bits (103), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 526 MTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
M ++ +S K L +F++RD++ +I G+ LV++ +VP G+V F SY +L+ +
Sbjct: 675 MVSVLSASPKGLPFEFKFDSRDNVELIDELGRTLVNVCNIVPAGLVVFVPSYAFLDKLMA 734
Query: 586 TRDD 589
D
Sbjct: 735 RWKD 738
>gi|332158988|ref|YP_004424267.1| DNA repair helicase rad3 [Pyrococcus sp. NA2]
gi|331034451|gb|AEC52263.1| DNA repair helicase rad3 [Pyrococcus sp. NA2]
Length = 638
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 67 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA---RSSVVVFDEAHNIDNVC 123
L LCPY + R+ A ++V SY Y+++P I + L +V+FDEAHNI +
Sbjct: 163 LELCPYEVTRKVGEKANVIVASYLYMINPWIRQAFMESLGLDYSDLIVIFDEAHNIPDQA 222
Query: 124 VDSLSVRINRRTIEKAV 140
+ +LS R++ RTIE+A+
Sbjct: 223 ISALSDRLSIRTIERAI 239
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 722 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA---RSSVVVFDEAHNIDNVC 778
L LCPY + R+ A ++V SY Y+++P I + L +V+FDEAHNI +
Sbjct: 163 LELCPYEVTRKVGEKANVIVASYLYMINPWIRQAFMESLGLDYSDLIVIFDEAHNIPDQA 222
Query: 779 VDSLSVRINRRTIEKAV 795
+ +LS R++ RTIE+A+
Sbjct: 223 ISALSDRLSIRTIERAI 239
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 65/108 (60%), Gaps = 10/108 (9%)
Query: 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKL 493
+FPY+ + P Q ++ +++++ + ++E P+G GKT S+L+ ++ Y A L K+
Sbjct: 4 YFPYKTLRPNQKEFIELVRESVRKGENIIIEAPTGFGKTISVLAGVLPY--AISLGY-KV 60
Query: 494 LYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHS 541
+Y +RT ++++V+EEL + E ++G+ SR++LC+H+
Sbjct: 61 IYLARTHKQMDRVIEELKMI-------REIARVSGIEFRSRRDLCLHT 101
>gi|116179420|ref|XP_001219559.1| hypothetical protein CHGG_00338 [Chaetomium globosum CBS 148.51]
gi|88184635|gb|EAQ92103.1| hypothetical protein CHGG_00338 [Chaetomium globosum CBS 148.51]
Length = 979
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQ------GI 633
E F+ R + +IR G L++I VVPDGVV FF S+ YL+ VVA+W Q +
Sbjct: 529 FEFSFQKRREPGMIRQLGLALLNICSVVPDGVVVFFPSHGYLDEVVAAWQTQETPTQPPL 588
Query: 634 IDNLQKRKLLFIETQDAL 651
D L +K +F ET+ +
Sbjct: 589 WDRLAGKKAVFRETKGGV 606
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 16/127 (12%)
Query: 10 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVG-----REAPLAPGVYSITKLKEMG 64
++ RC L S +D+ C F + + R+A LA V I L +G
Sbjct: 181 INDRCTELQQSKTKDK---------CSFMPNTENLKQAHDFRDAALAT-VPDIEDLHRIG 230
Query: 65 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 124
+EL +CPY+ +R AI A+++ Y LL + + +L +VV+ DEAHN+ +
Sbjct: 231 KELQVCPYYASRTAIPGAEVITLPYPLLLQKNARDALGIKL-EGNVVIIDEAHNVMDAVA 289
Query: 125 DSLSVRI 131
+ + I
Sbjct: 290 NVYAAEI 296
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 16/127 (12%)
Query: 665 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVG-----REAPLAPGVYSITKLKEMG 719
++ RC L S +D+ C F + + R+A LA V I L +G
Sbjct: 181 INDRCTELQQSKTKDK---------CSFMPNTENLKQAHDFRDAALAT-VPDIEDLHRIG 230
Query: 720 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 779
+EL +CPY+ +R AI A+++ Y LL + + +L +VV+ DEAHN+ +
Sbjct: 231 KELQVCPYYASRTAIPGAEVITLPYPLLLQKNARDALGIKL-EGNVVIIDEAHNVMDAVA 289
Query: 780 DSLSVRI 786
+ + I
Sbjct: 290 NVYAAEI 296
Score = 44.3 bits (103), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
F+ R + +IR G L++I VVPDGVV FF S+ YL+ V
Sbjct: 533 FQKRREPGMIRQLGLALLNICSVVPDGVVVFFPSHGYLDEV 573
>gi|410928893|ref|XP_003977834.1| PREDICTED: Fanconi anemia group J protein homolog [Takifugu
rubripes]
Length = 1109
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 10/149 (6%)
Query: 35 CDFYEKFDAVGREAPLAP--GV---YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 89
C +Y +G + L GV + I L +G+ L C YF AR+ + A I+ Y
Sbjct: 273 CRYYHGVQKMGEQYLLQQVHGVSEAWDIEDLVSLGKRLRSCSYFAARELMAEAVIIFCPY 332
Query: 90 HYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGT 149
+YLLDP I + L+ ++V DEAHNI++ +S S +N ++ + + LE
Sbjct: 333 NYLLDPLIRESMDINLS-GQILVLDEAHNIEDCARESASFTVNYDSL---LASRDELESM 388
Query: 150 LK-EMKEADSAKLREEYARLVEGLRDAQS 177
+K +++EA L+ L+ ++++QS
Sbjct: 389 VKNKIREAKHEPLQNFCYSLINWIQESQS 417
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 10/149 (6%)
Query: 690 CDFYEKFDAVGREAPLAP--GV---YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 744
C +Y +G + L GV + I L +G+ L C YF AR+ + A I+ Y
Sbjct: 273 CRYYHGVQKMGEQYLLQQVHGVSEAWDIEDLVSLGKRLRSCSYFAARELMAEAVIIFCPY 332
Query: 745 HYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGT 804
+YLLDP I + L+ ++V DEAHNI++ +S S +N ++ + + LE
Sbjct: 333 NYLLDPLIRESMDINLS-GQILVLDEAHNIEDCARESASFTVNYDSL---LASRDELESM 388
Query: 805 LK-EMKEADSAKLREEYARLVEGLRDAQS 832
+K +++EA L+ L+ ++++QS
Sbjct: 389 VKNKIREAKHEPLQNFCYSLINWIQESQS 417
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAH 486
I + + FP + YP Q A M + + L+ HCLLE P+G+GK+ +LL + + A
Sbjct: 10 IGGVKIQFPRK-AYPSQLAMMNSIIRGLNTGQHCLLESPTGSGKSLALLCSTLGWQQAQ 67
>gi|290987559|ref|XP_002676490.1| predicted protein [Naegleria gruberi]
gi|284090092|gb|EFC43746.1| predicted protein [Naegleria gruberi]
Length = 640
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 64 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 123
G + CP+F +R+ A+I+ Y+YL+DP + V+ +++ +S+++FDEAHN+ +C
Sbjct: 108 GLKRCFCPFFYSREKQKVAEIIFMPYNYLIDPLLRKKVNVDIS-NSIIIFDEAHNVQKLC 166
Query: 124 VDSLSVRINRRTIEKAVGNIQTLEGTLKEM 153
++ S + I KA+ I+ + ++
Sbjct: 167 AEASSFDFSTINISKAIAEIEKCRAEMDKL 196
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 719 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 778
G + CP+F +R+ A+I+ Y+YL+DP + V+ +++ +S+++FDEAHN+ +C
Sbjct: 108 GLKRCFCPFFYSREKQKVAEIIFMPYNYLIDPLLRKKVNVDIS-NSIIIFDEAHNVQKLC 166
Query: 779 VDSLSVRINRRTIEKAVGNIQTLEGTLKEM 808
++ S + I KA+ I+ + ++
Sbjct: 167 AEASSFDFSTINISKAIAEIEKCRAEMDKL 196
Score = 40.4 bits (93), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYD-----QGII 634
L S F R +R G L++++ VVPDG++ FF SY ++ + W +
Sbjct: 399 LNSSFTNRASEPYLREVGTTLLNLSKVVPDGLLVFFPSYTLMDQCIEIWKKSNGGAKSTW 458
Query: 635 DNLQKRKLLFIETQDALDSRSVSKERDGKI 664
D++ + K + E +++ V +E + I
Sbjct: 459 DSVTQNKTIITEPKESSKLNQVIREYEDSI 488
>gi|119195411|ref|XP_001248309.1| hypothetical protein CIMG_02080 [Coccidioides immitis RS]
gi|121932141|sp|Q1E5T3.1|CHL1_COCIM RecName: Full=ATP-dependent RNA helicase CHL1; AltName:
Full=Chromosome loss protein 1
Length = 861
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 26/229 (11%)
Query: 665 VDGRCHSLTSSSVRDRHK-----AGEN-IPVCDFYEKFDAVGREAPLAPGVYSITKLKEM 718
++ RC L SS+V HK + EN + + DF R+ LA V+ I + ++
Sbjct: 276 INERCLDLQSSNVLPGHKCPFAPSKENELAINDF--------RDHVLAE-VHDIEDIGKI 326
Query: 719 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 778
G+ G+CPY+ +R I H++IV Y LL + + L + V++ DEAHN+ +V
Sbjct: 327 GQRTGICPYYASRSVIGHSEIVTLPYQLLLQKSARDALDISL-KDHVIIIDEAHNLMDVI 385
Query: 779 VDSLSVRIN----RRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
+ SV ++ R +E+ + + LK A++ + + L +AR
Sbjct: 386 ANIHSVNVSLTQLRIGLEQLTIYARKYKARLKGKNRVYVAQVMRLLGSIAKYLESVLAAR 445
Query: 835 ETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
E + V P ++ GK GI + +R + SKL + + Y+
Sbjct: 446 E---LREGAVDPSYLMSGK---GIDQINLHKLSRYLQESKLARKVDGYI 488
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 16/129 (12%)
Query: 10 VDGRCHSLTSSSVRDRHK-----AGEN-IPVCDFYEKFDAVGREAPLAPGVYSITKLKEM 63
++ RC L SS+V HK + EN + + DF R+ LA V+ I + ++
Sbjct: 276 INERCLDLQSSNVLPGHKCPFAPSKENELAINDF--------RDHVLAE-VHDIEDIGKI 326
Query: 64 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 123
G+ G+CPY+ +R I H++IV Y LL + + L + V++ DEAHN+ +V
Sbjct: 327 GQRTGICPYYASRSVIGHSEIVTLPYQLLLQKSARDALDISL-KDHVIIIDEAHNLMDVI 385
Query: 124 VDSLSVRIN 132
+ SV ++
Sbjct: 386 ANIHSVNVS 394
Score = 44.3 bits (103), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWY-------DQGIID 635
FE R+ ++I + G+ + +I PDGVV FF SY +L VV W + I+D
Sbjct: 616 TFEKRNSRAMIIDLGKTISEICKATPDGVVAFFPSYDFLNQVVEIWKQPCSNSGNPSILD 675
Query: 636 NLQKRKLLFIETQD-ALDSRSVSKERDGKIVDGRCHSLTS 674
+L K L E+++ A+++ ++ ++ I +G+ L S
Sbjct: 676 SLGLVKPLLYESKEKAMNTEALLQKYANFIDEGKGALLLS 715
>gi|50726319|dbj|BAD33894.1| putative BRCA1 interacting protein C-terminal helicase 1 [Oryza
sativa Japonica Group]
Length = 1366
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 10 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPG----VYSITKLKEMGR 65
+D C SL S + C Y+ + R L G V+ I L +GR
Sbjct: 181 IDELCKSLLDDSAQG----------CPEYKNAQKLSRHPSLQIGGCYEVHDIEDLVRVGR 230
Query: 66 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVD 125
++ CPYF A+ A++V Y+YL+ P + + ++ R S++V DEAHNI+++ D
Sbjct: 231 KVKGCPYFAAQTMAEAAQLVFCPYNYLISPIVRRAMDIDI-RGSIIVLDEAHNIEDIARD 289
Query: 126 SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL 172
+ S ++ ++ + Q LEG + + EA AK+ E +++GL
Sbjct: 290 AGSFDVDEESL---LFLRQELEGLVTD--EA-VAKIYEPLHEVIQGL 330
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 665 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPG----VYSITKLKEMGR 720
+D C SL S + C Y+ + R L G V+ I L +GR
Sbjct: 181 IDELCKSLLDDSAQG----------CPEYKNAQKLSRHPSLQIGGCYEVHDIEDLVRVGR 230
Query: 721 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVD 780
++ CPYF A+ A++V Y+YL+ P + + ++ R S++V DEAHNI+++ D
Sbjct: 231 KVKGCPYFAAQTMAEAAQLVFCPYNYLISPIVRRAMDIDI-RGSIIVLDEAHNIEDIARD 289
Query: 781 SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL 827
+ S ++ ++ + Q LEG + + EA AK+ E +++GL
Sbjct: 290 AGSFDVDEESL---LFLRQELEGLVTD--EA-VAKIYEPLHEVIQGL 330
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 53/156 (33%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALD-----AKGHCLLEMPSGTGKTTSLLSLIVAY 482
+ +PV FPY+ Y Q A+M + LD + H LLE P+GTGK+ SLL +A+
Sbjct: 27 VGGVPVEFPYK-PYGTQLAFMGRVIATLDRARRQGRSHALLESPTGTGKSLSLLCSALAW 85
Query: 483 MNAHPL--------------------------------------DVTKLLYCSRTVPEIE 504
+PL +V + Y +RT +I
Sbjct: 86 QRHYPLRAPPAAAPDPFLHGGGFVPDDTQKQATPGVPEKATRKKNVPTIYYATRTHAQIT 145
Query: 505 KVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIH 540
+VV E Y K + + M +L+SRK+ C++
Sbjct: 146 QVVRE-------YRKTSYRVRMA--ILASRKHYCVN 172
>gi|348685651|gb|EGZ25466.1| hypothetical protein PHYSODRAFT_485995 [Phytophthora sojae]
Length = 1080
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 10/144 (6%)
Query: 4 ERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVG-REAPLAPGVYSITKLKE 62
E+ K+ R + S+ +DR C + FDA R A + I +L
Sbjct: 144 EKVSKLRGTRQNLACRSTCKDRR--------CMYKLGFDAYAKRSKKQAQPIMDIEELVT 195
Query: 63 MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNV 122
+E +CP+FL R + A+I+ Y+YL+DP + + +S+++FDEAHN++++
Sbjct: 196 TMKEKTICPFFLTRNMLPEAEIIFVPYNYLIDPLARRSIGISI-ENSILIFDEAHNVESI 254
Query: 123 CVDSLSVRINRRTIEKAVGNIQTL 146
++ S ++ I + + T
Sbjct: 255 ASEAASYALSSNDISGCISEVDTF 278
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 10/144 (6%)
Query: 659 ERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVG-REAPLAPGVYSITKLKE 717
E+ K+ R + S+ +DR C + FDA R A + I +L
Sbjct: 144 EKVSKLRGTRQNLACRSTCKDRR--------CMYKLGFDAYAKRSKKQAQPIMDIEELVT 195
Query: 718 MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNV 777
+E +CP+FL R + A+I+ Y+YL+DP + + +S+++FDEAHN++++
Sbjct: 196 TMKEKTICPFFLTRNMLPEAEIIFVPYNYLIDPLARRSIGISI-ENSILIFDEAHNVESI 254
Query: 778 CVDSLSVRINRRTIEKAVGNIQTL 801
++ S ++ I + + T
Sbjct: 255 ASEAASYALSSNDISGCISEVDTF 278
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 54/174 (31%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM-- 483
L I +PV FP+ Y Q YM ++ AL +K + +LE P+GTGKT LL +A+
Sbjct: 4 LEICGIPVEFPFP-PYDSQLVYMEKVLLALTSKQNAILESPTGTGKTLCLLCATLAWRRQ 62
Query: 484 ---------------------------------NAHPLDVTKLLYCSRTVPEIEKVVEEL 510
+ + +++Y SRT ++++VV+EL
Sbjct: 63 LQKTLGKSAMATSSAAQQRPGASLAYEGYGSDGESDAPQLPRIIYSSRTHSQLKQVVQEL 122
Query: 511 ARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
N VL SR++LC++ + +S +R Q ++AC
Sbjct: 123 ---------KNTSYRPNVAVLGSREHLCVN------EKVSKLRGTRQ---NLAC 158
>gi|297609925|ref|NP_001063870.2| Os09g0551800 [Oryza sativa Japonica Group]
gi|255679120|dbj|BAF25784.2| Os09g0551800 [Oryza sativa Japonica Group]
Length = 1187
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 10 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPG----VYSITKLKEMGR 65
+D C SL S + C Y+ + R L G V+ I L +GR
Sbjct: 181 IDELCKSLLDDSAQG----------CPEYKNAQKLSRHPSLQIGGCYEVHDIEDLVRVGR 230
Query: 66 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVD 125
++ CPYF A+ A++V Y+YL+ P + + ++ R S++V DEAHNI+++ D
Sbjct: 231 KVKGCPYFAAQTMAEAAQLVFCPYNYLISPIVRRAMDIDI-RGSIIVLDEAHNIEDIARD 289
Query: 126 SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL 172
+ S ++ ++ + Q LEG + + EA AK+ E +++GL
Sbjct: 290 AGSFDVDEESL---LFLRQELEGLVTD--EA-VAKIYEPLHEVIQGL 330
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 665 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPG----VYSITKLKEMGR 720
+D C SL S + C Y+ + R L G V+ I L +GR
Sbjct: 181 IDELCKSLLDDSAQG----------CPEYKNAQKLSRHPSLQIGGCYEVHDIEDLVRVGR 230
Query: 721 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVD 780
++ CPYF A+ A++V Y+YL+ P + + ++ R S++V DEAHNI+++ D
Sbjct: 231 KVKGCPYFAAQTMAEAAQLVFCPYNYLISPIVRRAMDIDI-RGSIIVLDEAHNIEDIARD 289
Query: 781 SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL 827
+ S ++ ++ + Q LEG + + EA AK+ E +++GL
Sbjct: 290 AGSFDVDEESL---LFLRQELEGLVTD--EA-VAKIYEPLHEVIQGL 330
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 53/156 (33%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALD-----AKGHCLLEMPSGTGKTTSLLSLIVAY 482
+ +PV FPY+ Y Q A+M + LD + H LLE P+GTGK+ SLL +A+
Sbjct: 27 VGGVPVEFPYK-PYGTQLAFMGRVIATLDRARRQGRSHALLESPTGTGKSLSLLCSALAW 85
Query: 483 MNAHPL--------------------------------------DVTKLLYCSRTVPEIE 504
+PL +V + Y +RT +I
Sbjct: 86 QRHYPLRAPPAAAPDPFLHGGGFVPDDTQKQATPGVPEKATRKKNVPTIYYATRTHAQIT 145
Query: 505 KVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIH 540
+VV E Y K + + M +L+SRK+ C++
Sbjct: 146 QVVRE-------YRKTSYRVRMA--ILASRKHYCVN 172
>gi|313224365|emb|CBY20154.1| unnamed protein product [Oikopleura dioica]
Length = 976
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 20/121 (16%)
Query: 433 VFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLD--- 489
V FPY+ YP Q Y+ + +AL + H +LE P+GTGKT LL+ ++AY +
Sbjct: 14 VRFPYD-PYPAQEEYIKKCVEALVKRNHAVLESPTGTGKTLCLLASVIAYREWAKRNPPK 72
Query: 490 -----------VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLC 538
+ K++Y SRT ++ +VV EL +L D +N ++MT V+ R +LC
Sbjct: 73 NKYGGSLGTESIPKIIYASRTHSQLTQVVSELRKLRD-VCGYN--VDMT--VVGGRSSLC 127
Query: 539 I 539
+
Sbjct: 128 V 128
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 68 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSL 127
+C Y+L+R +I++ Y+Y+LD KI S E ++ +++ DEAHN++ VC +S
Sbjct: 195 AICGYYLSRSKADTVEILLMPYNYILDKKIRQRNSFEF-KNKILILDEAHNVEQVCEESS 253
Query: 128 SVRINRRTIE 137
S I+ + +E
Sbjct: 254 SHYISLKKLE 263
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 723 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSL 782
+C Y+L+R +I++ Y+Y+LD KI S E ++ +++ DEAHN++ VC +S
Sbjct: 195 AICGYYLSRSKADTVEILLMPYNYILDKKIRQRNSFEF-KNKILILDEAHNVEQVCEESS 253
Query: 783 SVRINRRTIE 792
S I+ + +E
Sbjct: 254 SHYISLKKLE 263
>gi|392862459|gb|EAS36901.2| ATP-dependent RNA helicase CHL1 [Coccidioides immitis RS]
Length = 908
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 26/229 (11%)
Query: 665 VDGRCHSLTSSSVRDRHK-----AGEN-IPVCDFYEKFDAVGREAPLAPGVYSITKLKEM 718
++ RC L SS+V HK + EN + + DF R+ LA V+ I + ++
Sbjct: 323 INERCLDLQSSNVLPGHKCPFAPSKENELAINDF--------RDHVLAE-VHDIEDIGKI 373
Query: 719 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 778
G+ G+CPY+ +R I H++IV Y LL + + L + V++ DEAHN+ +V
Sbjct: 374 GQRTGICPYYASRSVIGHSEIVTLPYQLLLQKSARDALDISL-KDHVIIIDEAHNLMDVI 432
Query: 779 VDSLSVRIN----RRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
+ SV ++ R +E+ + + LK A++ + + L +AR
Sbjct: 433 ANIHSVNVSLTQLRIGLEQLTIYARKYKARLKGKNRVYVAQVMRLLGSIAKYLESVLAAR 492
Query: 835 ETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
E + V P ++ GK GI + +R + SKL + + Y+
Sbjct: 493 E---LREGAVDPSYLMSGK---GIDQINLHKLSRYLQESKLARKVDGYI 535
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 16/129 (12%)
Query: 10 VDGRCHSLTSSSVRDRHK-----AGEN-IPVCDFYEKFDAVGREAPLAPGVYSITKLKEM 63
++ RC L SS+V HK + EN + + DF R+ LA V+ I + ++
Sbjct: 323 INERCLDLQSSNVLPGHKCPFAPSKENELAINDF--------RDHVLAE-VHDIEDIGKI 373
Query: 64 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 123
G+ G+CPY+ +R I H++IV Y LL + + L + V++ DEAHN+ +V
Sbjct: 374 GQRTGICPYYASRSVIGHSEIVTLPYQLLLQKSARDALDISL-KDHVIIIDEAHNLMDVI 432
Query: 124 VDSLSVRIN 132
+ SV ++
Sbjct: 433 ANIHSVNVS 441
Score = 44.7 bits (104), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWY-------DQGIID 635
FE R+ ++I + G+ + +I PDGVV FF SY +L VV W + I+D
Sbjct: 663 TFEKRNSRAMIIDLGKTISEICKATPDGVVAFFPSYDFLNQVVEIWKQPCSNSGNPSILD 722
Query: 636 NLQKRKLLFIETQD-ALDSRSVSKERDGKIVDGRCHSLTS 674
+L K L E+++ A+++ ++ ++ I +G+ L S
Sbjct: 723 SLGLVKPLLYESKEKAMNTEALLQKYANFIDEGKGALLLS 762
>gi|296417607|ref|XP_002838444.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634383|emb|CAZ82635.1| unnamed protein product [Tuber melanosporum]
Length = 807
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYD--------- 630
E FE R ++I G+ +V++ V+P GVVCFF SY YLE VV+ W
Sbjct: 577 FEFTFEKRMQPAMIEELGRAIVNLCQVIPHGVVCFFPSYAYLEFVVSQWRKKPTPASNTA 636
Query: 631 -QGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTS 674
+ + + L+ RK +F E+ D V +E I G+ L S
Sbjct: 637 AKSLWERLEDRKTVFRESSDGSSVEEVLREYAQAIDSGKGGLLLS 681
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 18/145 (12%)
Query: 650 ALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGV 709
A++ R + +R G RC L RD + + V DF R+ LA +
Sbjct: 227 AINERCLELQRSGASEASRCEFLPG---RD-----DQVAVRDF--------RDHTLAK-I 269
Query: 710 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 769
I L +GR++G+CPY+ +R I ++IV Y LL + L + +V+ D
Sbjct: 270 RDIEDLASLGRKMGICPYYASRPTIKPSEIVTLPYPLLLQKSAREALDLSL-KGHIVIVD 328
Query: 770 EAHNIDNVCVDSLSVRINRRTIEKA 794
EAHN+ N S+ ++ ++++
Sbjct: 329 EAHNLINAISSIYSITVSLAQLQRS 353
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
+ I L +GR++G+CPY+ +R I ++IV Y LL + L + +V+
Sbjct: 269 IRDIEDLASLGRKMGICPYYASRPTIKPSEIVTLPYPLLLQKSAREALDLSL-KGHIVIV 327
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKA 139
DEAHN+ N S+ ++ ++++
Sbjct: 328 DEAHNLINAISSIYSITVSLAQLQRS 353
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
FE R ++I G+ +V++ V+P GVVCFF SY YLE V
Sbjct: 581 FEKRMQPAMIEELGRAIVNLCQVIPHGVVCFFPSYAYLEFV 621
>gi|198421637|ref|XP_002120480.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 1008
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 12/149 (8%)
Query: 31 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAK--IVVYS 88
N C FY + + V I +L +G+ +CPY+ R+ + I+
Sbjct: 157 NKHTCQFYNNVEDAKKNNIFTTKVMDIEELVTVGKSRTVCPYYSEREVSKQNECGIIFTP 216
Query: 89 YHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEG 148
Y+YLLD K + E+ R ++V+FDEAHN++ +C +S S + + K + + +
Sbjct: 217 YNYLLDRKSRATNNLEI-RGNIVIFDEAHNLEKLCEESTSFDLTSLEVAKCIEEVGDV-- 273
Query: 149 TLKEMKEADSAKLREEYARLVEGLRDAQS 177
D+A EE + +G + +S
Sbjct: 274 -------LDAATKFEESGTVADGHENGES 295
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 12/149 (8%)
Query: 686 NIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAK--IVVYS 743
N C FY + + V I +L +G+ +CPY+ R+ + I+
Sbjct: 157 NKHTCQFYNNVEDAKKNNIFTTKVMDIEELVTVGKSRTVCPYYSEREVSKQNECGIIFTP 216
Query: 744 YHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEG 803
Y+YLLD K + E+ R ++V+FDEAHN++ +C +S S + + K + + +
Sbjct: 217 YNYLLDRKSRATNNLEI-RGNIVIFDEAHNLEKLCEESTSFDLTSLEVAKCIEEVGDV-- 273
Query: 804 TLKEMKEADSAKLREEYARLVEGLRDAQS 832
D+A EE + +G + +S
Sbjct: 274 -------LDAATKFEESGTVADGHENGES 295
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 34/144 (23%)
Query: 425 GLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN 484
L I + V FP+ Y Q +YM ++ +AL+ + LE P+GTGKT LL +A+
Sbjct: 3 ALDIHGIKVEFPFT-AYEVQKSYMTKVIQALNTHQNAALESPTGTGKTLCLLCSTLAWRR 61
Query: 485 AH--------------------------PLDVTKLLYCSRTVPEIEKVVEELARLFDYYI 518
H + K++Y SRT +I +VV+EL R DY
Sbjct: 62 QHLNELKKHTNPVSQEDAWSSSEKSKDSAIPAPKIIYASRTHSQISQVVKELKRT-DY-- 118
Query: 519 KHNEEINMTGLVLSSRKNLCIHSE 542
++I ++ +L SR+ +CIH E
Sbjct: 119 --GKDITIS--ILGSREQMCIHPE 138
>gi|340715420|ref|XP_003396211.1| PREDICTED: LOW QUALITY PROTEIN: regulator of telomere elongation
helicase 1 homolog [Bombus terrestris]
Length = 996
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
C +Y ++ + V I L ++G++ CPYFL+R+ +A I Y+YLL
Sbjct: 176 TCFYYNNVESRKDDPLFKQEVLDIEDLVKVGQKFKCCPYFLSRELKQNADITFMPYNYLL 235
Query: 94 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
D K ++ ++++++ DEAHNI+ C ++ S++I
Sbjct: 236 DSKSRKTQGIDI-QNNIILLDEAHNIEKTCEEAASLQI 272
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
C +Y ++ + V I L ++G++ CPYFL+R+ +A I Y+YLL
Sbjct: 176 TCFYYNNVESRKDDPLFKQEVLDIEDLVKVGQKFKCCPYFLSRELKQNADITFMPYNYLL 235
Query: 749 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
D K ++ ++++++ DEAHNI+ C ++ S++I
Sbjct: 236 DSKSRKTQGIDI-QNNIILLDEAHNIEKTCEEAASLQI 272
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F TR+D I + G+ +++ +C++P G++ FF
Sbjct: 510 QICVGVLSQGPDGYS--------LNSSFNTRNDPKYIASLGRTVLNFSCIIPYGLLVFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRC 669
SY ++ W G+ + RK +++E Q +V E KI D C
Sbjct: 562 SYPIMKKCKEEWQTTGLWTKIADRKPIYVEPQYRDGFINVMNEYYEKIKDPSC 614
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 77/179 (43%), Gaps = 18/179 (10%)
Query: 416 PMVRENYAMGLMIDDLPVFFP------YEYIYPEQYAYMVELKKALDAKGHCLLE----M 465
P R+ +A+ D L F Y + Y ++L++ K + + E +
Sbjct: 386 PFTRKGHALQKFSDLLKTVFSSGDSPRYREKIKQCYKVYIQLEEQKKXKQNEVWETKKIL 445
Query: 466 PSGTGKTTSLLSLIVAYMNAHPLD--VTKLLYCSRTVPEIEKVVEELA-----RLFDYYI 518
GK S + +D V ++ S T+ ++ + EL +L + +I
Sbjct: 446 KKNEGKVISYWCFSPGFSMQQLMDQGVRSIILTSGTLSPLKPFISELGIPIELQLENPHI 505
Query: 519 KHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 577
++I G++ ++S F TR+D I + G+ +++ +C++P G++ FF SY
Sbjct: 506 VKGDQI-CVGVLSQGPDGYSLNSSFNTRNDPKYIASLGRTVLNFSCIIPYGLLVFFPSY 563
>gi|42601324|gb|AAS21351.1| helicase-like protein NHL-like protein [Oikopleura dioica]
Length = 1016
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 20/121 (16%)
Query: 433 VFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLD--- 489
V FPY+ YP Q Y+ + +AL + H +LE P+GTGKT LL+ ++AY +
Sbjct: 14 VRFPYD-PYPAQEEYIKKCVEALVKRNHAVLESPTGTGKTLCLLASVIAYREWAKRNPPK 72
Query: 490 -----------VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLC 538
+ K++Y SRT ++ +VV EL +L D +N ++MT V+ R +LC
Sbjct: 73 NKYGGSLGTESIPKIIYASRTHSQLTQVVSELRKLRD-VCGYN--VDMT--VVGGRSSLC 127
Query: 539 I 539
+
Sbjct: 128 V 128
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 68 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSL 127
+C Y+L+R +I++ Y+Y+LD KI S E ++ +++ DEAHN++ VC +S
Sbjct: 245 AICGYYLSRSKADTVEILLMPYNYILDKKIRQRNSFEF-KNKILILDEAHNVEQVCEESS 303
Query: 128 SVRINRRTIE 137
S I+ + +E
Sbjct: 304 SHYISLKKLE 313
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 723 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSL 782
+C Y+L+R +I++ Y+Y+LD KI S E ++ +++ DEAHN++ VC +S
Sbjct: 245 AICGYYLSRSKADTVEILLMPYNYILDKKIRQRNSFEF-KNKILILDEAHNVEQVCEESS 303
Query: 783 SVRINRRTIE 792
S I+ + +E
Sbjct: 304 SHYISLKKLE 313
>gi|452981101|gb|EME80861.1| hypothetical protein MYCFIDRAFT_20311, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 788
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L+ F++R+D + +R GQ L+ IA V G+V FF SY YLE+V+ +W Q +I L
Sbjct: 591 LDFSFKSRNDTTAMR-LGQALIKIASKVQGGMVVFFPSYSYLETVLRTWTSQPLIPPLSS 649
Query: 640 RKLLFIETQDALDSRSVSKE 659
K LF DSRSVS E
Sbjct: 650 LKPLFS------DSRSVSAE 663
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDD---ISVIRNYGQL 599
F++R+D + +R GQ L+ IA V G+V FF SY YLE+V T I + + L
Sbjct: 595 FKSRNDTTAMR-LGQALIKIASKVQGGMVVFFPSYSYLETVLRTWTSQPLIPPLSSLKPL 653
Query: 600 LVDIACVVPDGVVCFFTSYLY--------LESVVASWYDQGI 633
D V + FTS ++ L SV+ +GI
Sbjct: 654 FSDSRSVSAEETFRSFTSAIHTNPSRGALLFSVIGGKLSEGI 695
Score = 41.6 bits (96), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 96/235 (40%), Gaps = 32/235 (13%)
Query: 650 ALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGV 709
A++ R + ++ + D +C L + +D V DF + A+ R +
Sbjct: 260 AINERCIELQQSNRAGDKKCSFLPTKDQQD--------VVLDFRDH--ALSR-------I 302
Query: 710 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 769
I L ++G +L LCPY+ +R I A+ + + A +S + VVV D
Sbjct: 303 RDIEDLAKLGSKLELCPYYASRAGIGPAE---------MSAREALGIS---LKGHVVVID 350
Query: 770 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRD 829
EAHN+ N S RI + +A + T + + + + R+++ L
Sbjct: 351 EAHNLMNAVEGIHSARITENQLRRAKEGLITYLQKFRNRLKGSNRTYVTQVVRVIDSLLS 410
Query: 830 AQSARETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLT 884
++ + + N P +L GK I + + +R SKL + ++ Y+
Sbjct: 411 FVASVKDHNMSGNVTSPSALLAGKAVDQINL---SKLSRYIDESKLARKVEGYIA 462
>gi|393243158|gb|EJD50674.1| DNA repair helicase [Auricularia delicata TFB-10046 SS5]
Length = 801
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I L +G+EL CPYF +R+A+ A+IV Y+ LL +L + VV+ DEA
Sbjct: 277 IEDLVTLGQELRTCPYFGSRRAVASAQIVTLPYNLLLQKSAREATGIDL-KGHVVIIDEA 335
Query: 117 HNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE 152
HN+ + + SV +N +T+ +++ + G K+
Sbjct: 336 HNLIDTMLSIHSVALNLKTLRESLSQLNIYHGKFKK 371
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I L +G+EL CPYF +R+A+ A+IV Y+ LL +L + VV+ DEA
Sbjct: 277 IEDLVTLGQELRTCPYFGSRRAVASAQIVTLPYNLLLQKSAREATGIDL-KGHVVIIDEA 335
Query: 772 HNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKE 807
HN+ + + SV +N +T+ +++ + G K+
Sbjct: 336 HNLIDTMLSIHSVALNLKTLRESLSQLNIYHGKFKK 371
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
+E R D +++ + G +L+++ +VPDG+V FF SY +L +V + + G+ D + RK L
Sbjct: 576 YEKRSDKTLMSDLGMVLLNLVRIVPDGMVVFFPSYAFLATVQSQLKESGLWDKIGARKPL 635
Query: 644 FIETQDALDSRSVSKE 659
F E D V +E
Sbjct: 636 FTEPNDGSSVEEVLRE 651
Score = 46.2 bits (108), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 525 NMTGLVLS-SRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
N+ LVLS S + + +E R D +++ + G +L+++ +VPDG+V FF SY +L +V
Sbjct: 557 NLCALVLSKSPQGTSLTFNYEKRSDKTLMSDLGMVLLNLVRIVPDGMVVFFPSYAFLATV 616
>gi|392577022|gb|EIW70152.1| hypothetical protein TREMEDRAFT_29466 [Tremella mesenterica DSM
1558]
Length = 840
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 10/125 (8%)
Query: 24 DRHKAGENIPVCDFYEKFDAVG----REAPLAPGVYSITKLKEMGRELGLCPYFLARQAI 79
D K+ E C+F K + V R+A LA V I + +MGR+ G+CPY+ R+A+
Sbjct: 259 DMQKSSE----CEFLPKSEDVAMLDARDAVLAE-VRDIEDIVQMGRKCGVCPYYSTRRAV 313
Query: 80 IHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKA 139
A++V Y+ LL + +L + VVV DEAHN+ + + S + + A
Sbjct: 314 KQAQLVTLPYNLLLQKNAREALDIDL-KGQVVVIDEAHNLIDTILSIHSTTLTHHHLTSA 372
Query: 140 VGNIQ 144
+ +Q
Sbjct: 373 ISQLQ 377
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 10/125 (8%)
Query: 679 DRHKAGENIPVCDFYEKFDAVG----REAPLAPGVYSITKLKEMGRELGLCPYFLARQAI 734
D K+ E C+F K + V R+A LA V I + +MGR+ G+CPY+ R+A+
Sbjct: 259 DMQKSSE----CEFLPKSEDVAMLDARDAVLAE-VRDIEDIVQMGRKCGVCPYYSTRRAV 313
Query: 735 IHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKA 794
A++V Y+ LL + +L + VVV DEAHN+ + + S + + A
Sbjct: 314 KQAQLVTLPYNLLLQKNAREALDIDL-KGQVVVIDEAHNLIDTILSIHSTTLTHHHLTSA 372
Query: 795 VGNIQ 799
+ +Q
Sbjct: 373 ISQLQ 377
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
LE + R D S++ G +++ +VPDG+V F SY +L+ + +W ++ L +
Sbjct: 603 LEFKYSNRSDDSLLAELGSVILSTVGLVPDGIVVFLPSYSFLDKIKHTW--TAVLPKLAE 660
Query: 640 RKLLFIETQDALDSRSVSKE 659
+K +F E Q + + +V ++
Sbjct: 661 KKHVFYEPQTSGEVETVLRD 680
>gi|380021224|ref|XP_003694471.1| PREDICTED: Fanconi anemia group J protein homolog, partial [Apis
florea]
Length = 878
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
++ I L ++G+E CPYF AR + A I+ Y+Y++DP I + ++ + V++
Sbjct: 350 IWDIEDLVDIGKEKESCPYFAARTLMDTADIIFCPYNYIIDPNIRESLQLDM-KDQVIIL 408
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 146
DEAHNI+++ D SV ++ +TL
Sbjct: 409 DEAHNIEDISRDVSSVSFREDHLQATAHECETL 441
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
++ I L ++G+E CPYF AR + A I+ Y+Y++DP I + ++ + V++
Sbjct: 350 IWDIEDLVDIGKEKESCPYFAARTLMDTADIIFCPYNYIIDPNIRESLQLDM-KDQVIIL 408
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 801
DEAHNI+++ D SV ++ +TL
Sbjct: 409 DEAHNIEDISRDVSSVSFREDHLQATAHECETL 441
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 597 GQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
GQ+L+D+ +P G++CFF+SY + + + W I + K +FIE
Sbjct: 671 GQVLLDVCESIPHGILCFFSSYNVMNTQMERWKQNSIWSKITSVKTVFIE 720
>gi|164657658|ref|XP_001729955.1| hypothetical protein MGL_2941 [Malassezia globosa CBS 7966]
gi|159103849|gb|EDP42741.1| hypothetical protein MGL_2941 [Malassezia globosa CBS 7966]
Length = 891
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
LE E ++ G +L + + +VP G+V FF SY L+ VA W G++D L K
Sbjct: 658 LEFTHEAWQRPCLLDELGNVLSNYSNIVPHGMVVFFPSYASLDMTVAQWRKTGMLDRLSK 717
Query: 640 RKLLFIETQDALDSRSVSKE 659
RK +F+E +DA D ++ ++
Sbjct: 718 RKQVFMEPKDAKDVDTILRQ 737
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 18/154 (11%)
Query: 652 DSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVG-------REAP 704
D R V ++ RC L ++K G+ C F DA+G R+
Sbjct: 281 DVRRVGATSGTDAMNERCLELI------QNKKGQR---CPFLPPHDAMGQVTMDRYRDHA 331
Query: 705 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 764
LA V+ I +L ++G++L +CPYF R + +A++V Y+ LL + L S
Sbjct: 332 LAQ-VHDIEELVQLGKDLRICPYFGTRHSARNAELVTLPYNLLLQHDAREALQLSL-EES 389
Query: 765 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
+++ DEAHN+ + + + + + + I++A +
Sbjct: 390 ILLIDEAHNLIDTILATYTTELTQAHIDEATAQV 423
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
Query: 35 CDFYEKFDAVG-------REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
C F DA+G R+ LA V+ I +L ++G++L +CPYF R + +A++V
Sbjct: 310 CPFLPPHDAMGQVTMDRYRDHALAQ-VHDIEELVQLGKDLRICPYFGTRHSARNAELVTL 368
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
Y+ LL + L S+++ DEAHN+ + + + + + + I++A +
Sbjct: 369 PYNLLLQHDAREALQLSL-EESILLIDEAHNLIDTILATYTTELTQAHIDEATAQV 423
>gi|68069879|ref|XP_676851.1| DNA repair helicase [Plasmodium berghei strain ANKA]
gi|56496730|emb|CAH94015.1| DNA repair helicase, putative [Plasmodium berghei]
Length = 939
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 569 GVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW 628
G + + + L L S +E R + + I+ G + D+ +P GV+ FF+SY + VA+W
Sbjct: 428 GCMTHYNNQLLL-STYENRSNENYIKALGNCIFDVIAYIPFGVLIFFSSYSSMTETVATW 486
Query: 629 YDQGIIDNLQKRKLLFIETQDALDSRS--------VSKERDGKIVDGRCHSLTSSSVRDR 680
I D + K +F+E A D + + K+R G I+ G C S + +
Sbjct: 487 KKLKIFDKINSYKTIFVEPNKAADLKDILFQYENIIKKKRKGAILMGVCRGKISEGIDFK 546
Query: 681 HKAGENIPVC 690
+ +C
Sbjct: 547 DDCCRGVIIC 556
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 78/175 (44%), Gaps = 22/175 (12%)
Query: 621 LESVVASWYDQGIIDNLQKRKLL--FIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVR 678
L+ V+ + I N +K KLL + ++D L ++S G +++ C +
Sbjct: 2 LKQVIKELKNVYFIKNNEKYKLLTTILGSRDQLCVHNISYNYKGTMLNNMCKRV------ 55
Query: 679 DRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGR-------ELGLCPYFLAR 731
K+GE C ++ + + L L EMG+ + CP++ R
Sbjct: 56 --RKSGE----CMYHNGLKHLYKYKHLFTTPMDAETLNEMGKGNNSVGQNIHFCPFYATR 109
Query: 732 QAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
+ +++ Y+YL + ++ +L + +++ DE HNI+NV +++S +I
Sbjct: 110 EIQNECHVILLPYNYLFEENTRRILKLDL-ENCIIIIDEGHNIENVAEEAVSFKI 163
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 63 MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNV 122
+G+ + CP++ R+ +++ Y+YL + ++ +L + +++ DE HNI+NV
Sbjct: 96 VGQNIHFCPFYATREIQNECHVILLPYNYLFEENTRRILKLDL-ENCIIIIDEGHNIENV 154
Query: 123 CVDSLSVRI 131
+++S +I
Sbjct: 155 AEEAVSFKI 163
>gi|170585544|ref|XP_001897542.1| DEAD_2 family protein [Brugia malayi]
gi|158594849|gb|EDP33426.1| DEAD_2 family protein [Brugia malayi]
Length = 794
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 9/113 (7%)
Query: 33 PVCDFYEK-----FDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
P +FYEK D + + L P + + + R+ CPYF +R +A +++
Sbjct: 81 PFYNFYEKADPSTLDLLYSKNGLVPDIEEVISV---SRKHKYCPYFRSRSMYENADLILL 137
Query: 88 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 140
Y+Y++DP + + +L + ++V+FDEAHN+++VC +S SV + I +
Sbjct: 138 PYNYIVDPSLRYKHNIQL-KGNIVIFDEAHNLESVCEESTSVSFSTTQISACI 189
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 9/113 (7%)
Query: 688 PVCDFYEK-----FDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
P +FYEK D + + L P + + + R+ CPYF +R +A +++
Sbjct: 81 PFYNFYEKADPSTLDLLYSKNGLVPDIEEVISV---SRKHKYCPYFRSRSMYENADLILL 137
Query: 743 SYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 795
Y+Y++DP + + +L + ++V+FDEAHN+++VC +S SV + I +
Sbjct: 138 PYNYIVDPSLRYKHNIQL-KGNIVIFDEAHNLESVCEESTSVSFSTTQISACI 189
>gi|357468391|ref|XP_003604480.1| ATP-dependent RNA helicase chl1 [Medicago truncatula]
gi|355505535|gb|AES86677.1| ATP-dependent RNA helicase chl1 [Medicago truncatula]
Length = 1129
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 565 VVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 624
++P V C T + + + +R +++ G LL ++ VVP G+V FF S+ Y V
Sbjct: 615 ILPIAVSCGPTGRSF-DFSYSSRSSADMMQELGLLLCNLVTVVPQGIVVFFPSFDYESRV 673
Query: 625 VASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKE 659
+W GI++ + KRK +F E ++ +D SV KE
Sbjct: 674 YENWESSGILERITKRKRVFREPRNNMDVESVLKE 708
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 38 YEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKI 97
+E + V ++ PL I L +GR +G CPY+ +R + +VV Y LL
Sbjct: 292 HEFRNEVSQQGPL-----DIEDLANLGRTMGTCPYYGSRSMVRRVDLVVLPYQSLLSKSS 346
Query: 98 ANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 144
+ L +S++V+ DEAHN+ + ++ ++ +E +I+
Sbjct: 347 REALGLNL-KSNIVIIDEAHNLADSLINMYDSKLTLSQLENVHRHIE 392
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 693 YEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKI 752
+E + V ++ PL I L +GR +G CPY+ +R + +VV Y LL
Sbjct: 292 HEFRNEVSQQGPL-----DIEDLANLGRTMGTCPYYGSRSMVRRVDLVVLPYQSLLSKSS 346
Query: 753 ANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 799
+ L +S++V+ DEAHN+ + ++ ++ +E +I+
Sbjct: 347 REALGLNL-KSNIVIIDEAHNLADSLINMYDSKLTLSQLENVHRHIE 392
>gi|237837507|ref|XP_002368051.1| hypothetical protein TGME49_031800 [Toxoplasma gondii ME49]
gi|211965715|gb|EEB00911.1| hypothetical protein TGME49_031800 [Toxoplasma gondii ME49]
gi|221509186|gb|EEE34755.1| hypothetical protein TGVEG_023970 [Toxoplasma gondii VEG]
Length = 2272
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 7/85 (8%)
Query: 56 SITKLKEMGREL----GLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVS-KELARSSV 110
S +KL E R+L G CPY + A +VV Y+Y+LDP +A +L + SV
Sbjct: 892 SRSKLFEKKRQLFAAAGACPYHATLALLPMADLVVCPYNYVLDPGVAASSKLNDLLKGSV 951
Query: 111 VVFDEAHNIDNVCVD--SLSVRINR 133
++FDE HN++++C D SL ++++R
Sbjct: 952 IIFDEGHNVESICRDAGSLDLQMHR 976
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 7/85 (8%)
Query: 711 SITKLKEMGREL----GLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVS-KELARSSV 765
S +KL E R+L G CPY + A +VV Y+Y+LDP +A +L + SV
Sbjct: 892 SRSKLFEKKRQLFAAAGACPYHATLALLPMADLVVCPYNYVLDPGVAASSKLNDLLKGSV 951
Query: 766 VVFDEAHNIDNVCVD--SLSVRINR 788
++FDE HN++++C D SL ++++R
Sbjct: 952 IIFDEGHNVESICRDAGSLDLQMHR 976
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 414 LLPMVRENYAMGL-MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKT 472
+LP ++ ++ G I L V Y P Q M + +A + H ++E P+GTGKT
Sbjct: 279 VLPRLKTSHIKGRETIRGLNVLLHYSSALPPQKEVMAAVIEACQTERHAIIESPTGTGKT 338
Query: 473 TSLLSLIVAYM-----NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMT 527
+LL +A+ A + +++YC+RT + +V+ EL +
Sbjct: 339 AALLCAGLAWQREAQREAQSRSIGRIIYCTRTQKQASQVIAELKK---------SPYQPA 389
Query: 528 GLVLSSRKNLC 538
+ L+SR +LC
Sbjct: 390 AVQLASRSHLC 400
>gi|344210313|ref|YP_004794633.1| helicase [Haloarcula hispanica ATCC 33960]
gi|343781668|gb|AEM55645.1| helicase [Haloarcula hispanica ATCC 33960]
Length = 725
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 108/272 (39%), Gaps = 22/272 (8%)
Query: 647 TQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLA 706
+ +A+++R+ E + D R T S D + + +FY + L
Sbjct: 149 SSEAMEARNAVVEELRDLQDEREEIETERSTCDHYYRNLTVDTSEFY---------SWLF 199
Query: 707 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS-- 764
V + + E + GLC Y L ++ + +VV +YH+LLDP I + R
Sbjct: 200 DDVRTPDDVYEYAHQQGLCGYELLKEGMDGVDLVVCNYHHLLDPTIREQFFHWIGRDPED 259
Query: 765 -VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK----EADSAKLREE 819
+ VFDEAHN+++ D + T+++A+ + + E + E L E
Sbjct: 260 IIAVFDEAHNVESAARDHARRTLTENTLDQALEELDSEEDARTDAAANVIETFRDALVEA 319
Query: 820 YARLVE-GLRDAQSARETDVVLANPVLPDEI----LQGKTDYGIMIFADKRFARS-DKRS 873
Y E G R A D+ +AN D++ LQG T G D+ D +
Sbjct: 320 YEDSFEFGARAAVDEHWDDITIANDDRKDDLTLAFLQGYTGPGFHEELDRALELGRDLDA 379
Query: 874 KLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQ 905
+ K +E D T +A WL +
Sbjct: 380 RYQKAFKEGELDTRKECQTLQAAGFIADWLDE 411
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 14/117 (11%)
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHN 118
E + GLC Y L ++ + +VV +YH+LLDP I + R + VFDEAHN
Sbjct: 210 EYAHQQGLCGYELLKEGMDGVDLVVCNYHHLLDPTIREQFFHWIGRDPEDIIAVFDEAHN 269
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDA 175
+++ D RRT+ + TL+ L+E+ + A+ + A ++E RDA
Sbjct: 270 VESAARDHA-----RRTLTE-----NTLDQALEELDSEEDART-DAAANVIETFRDA 315
>gi|218202591|gb|EEC85018.1| hypothetical protein OsI_32311 [Oryza sativa Indica Group]
Length = 1265
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 11/142 (7%)
Query: 35 CDFYEKFDAVGREAPLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 90
C Y+ + R L G V+ I L +GR++ CPYF A+ A++V Y+
Sbjct: 155 CPEYKNAQKLSRHPSLQIGGCYEVHDIEDLIRVGRKVKGCPYFAAQTMAEAAQLVFCPYN 214
Query: 91 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 150
YL+ P + + ++ R S++V DEAHNI+++ D+ S ++ ++ + Q LEG +
Sbjct: 215 YLISPIVRRAMDIDI-RGSIIVLDEAHNIEDIARDAGSFDVDEESL---LFLRQELEGLV 270
Query: 151 KEMKEADSAKLREEYARLVEGL 172
+ EA AK+ E +++GL
Sbjct: 271 TD--EA-VAKIYEPLHEVIQGL 289
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 11/142 (7%)
Query: 690 CDFYEKFDAVGREAPLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 745
C Y+ + R L G V+ I L +GR++ CPYF A+ A++V Y+
Sbjct: 155 CPEYKNAQKLSRHPSLQIGGCYEVHDIEDLIRVGRKVKGCPYFAAQTMAEAAQLVFCPYN 214
Query: 746 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 805
YL+ P + + ++ R S++V DEAHNI+++ D+ S ++ ++ + Q LEG +
Sbjct: 215 YLISPIVRRAMDIDI-RGSIIVLDEAHNIEDIARDAGSFDVDEESL---LFLRQELEGLV 270
Query: 806 KEMKEADSAKLREEYARLVEGL 827
+ EA AK+ E +++GL
Sbjct: 271 TD--EA-VAKIYEPLHEVIQGL 289
Score = 41.6 bits (96), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L + + T ++ S G L +I VVP G + FF SY LE + WY G L+
Sbjct: 492 LNASYRTANEYSFQDELGATLEEICRVVPGGALVFFPSYNLLEKLQRRWYQTGQWARLEA 551
Query: 640 RKLLFIETQDALD 652
+K + +E + + +
Sbjct: 552 QKHVCVEPRGSTE 564
>gi|55379342|ref|YP_137192.1| helicase [Haloarcula marismortui ATCC 43049]
gi|55232067|gb|AAV47486.1| helicase [Haloarcula marismortui ATCC 43049]
Length = 717
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 105/270 (38%), Gaps = 22/270 (8%)
Query: 647 TQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLA 706
+ +A+++R+ E + D R T S D + + +FY + L
Sbjct: 141 SSEAMEARNAVVEELRDLQDEREEIETERSTCDHYYRNLTVDTSEFY---------SWLF 191
Query: 707 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS-- 764
V + + E + GLC Y L ++ + +VV +YH+LLDP I + R
Sbjct: 192 DDVRTPDDVYEYAHQQGLCGYELLKEGMDGVDLVVCNYHHLLDPTIREQFFHWIGRDPED 251
Query: 765 -VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARL 823
+ VFDEAHN+++ D + T+++A+ + E + R+
Sbjct: 252 IIAVFDEAHNVESAARDHARRTLTENTLDQALDELDNEEDARTDAAANVIETFRDALVEA 311
Query: 824 VE-----GLRDAQSARETDVVLANPVLPDEI----LQGKTDYGIMIFADKRFARS-DKRS 873
E G R+A D+ +AN D++ LQG T G D+ D +
Sbjct: 312 YEDSFGFGGREAVDEHWDDITIANDDRKDDLTLAFLQGYTGPGFHEELDRALELGRDLDA 371
Query: 874 KLPKWIQEYLTDNLTNLSTEEAVQLSKRWL 903
+ K +E D T +A WL
Sbjct: 372 RYQKAFKEGELDTRKECQTLQAAGFISDWL 401
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 11/200 (5%)
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHN 118
E + GLC Y L ++ + +VV +YH+LLDP I + R + VFDEAHN
Sbjct: 202 EYAHQQGLCGYELLKEGMDGVDLVVCNYHHLLDPTIREQFFHWIGRDPEDIIAVFDEAHN 261
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVE-----GLR 173
+++ D + T+++A+ + E + R+ E G R
Sbjct: 262 VESAARDHARRTLTENTLDQALDELDNEEDARTDAAANVIETFRDALVEAYEDSFGFGGR 321
Query: 174 DAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKT-RLRVQQVVQE 232
+A D+ +AN D++ + G T F L R +E + R Q+ +E
Sbjct: 322 EAVDEHWDDITIANDDRKDDLTLAFLQGY--TGPGFHEELDRALELGRDLDARYQKAFKE 379
Query: 233 SPATFLKDISSKPAPSMISE 252
K+ + A IS+
Sbjct: 380 GELDTRKECQTLQAAGFISD 399
>gi|154281191|ref|XP_001541408.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150411587|gb|EDN06975.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 501
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQ------GIIDN 636
+ R+D S+I + G+ + + CV+PDGVV FF SY YL V+ W IID+
Sbjct: 405 TYGKRNDESMIIDLGKTIAALCCVIPDGVVAFFPSYDYLNLVLMIWKKHIPTTGPSIIDS 464
Query: 637 LQKRKLLFIETQD 649
+Q+ K +F E+QD
Sbjct: 465 IQRSKAVFHESQD 477
Score = 43.5 bits (101), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVF 584
+ R+D S+I + G+ + + CV+PDGVV FF SY YL V
Sbjct: 406 YGKRNDESMIIDLGKTIAALCCVIPDGVVAFFPSYDYLNLVL 447
>gi|392350937|ref|XP_237570.6| PREDICTED: probable ATP-dependent RNA helicase DDX11, partial
[Rattus norvegicus]
Length = 954
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDGV----VCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD + +C S LE ++ R+ ++ G++L ++ VVP G+
Sbjct: 483 VVEFSCGHVIPPDNILPLIICSGPSNQQLEFTYQRRELPQMMEETGRILCNLCNVVPGGM 542
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCF SY YL V A W G++ L RK +F E + A
Sbjct: 543 VCFLPSYEYLRQVHAHWDKTGLLARLSVRKKIFQEPKRA 581
Score = 46.2 bits (108), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 35 CDFY--EKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYL 92
C FY E+ + + E L V + +L +G+E CPY+ +R AI A++VV Y L
Sbjct: 153 CPFYNHEQMELLRDEILLE--VKDMEQLVALGKEAQACPYYGSRFAIPAAQLVVLPYPML 210
Query: 93 LDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTLEGTLK 151
L L + VV+ DEAHN+ + + S +N + +A +Q +E K
Sbjct: 211 LHAATRQAAGIRL-QGQVVIIDEAHNLIDTITNIHSTEVNGSQLCQAHSQLLQYMERYRK 269
Query: 152 EMKEAD 157
+K +
Sbjct: 270 RLKAKN 275
Score = 46.2 bits (108), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 690 CDFY--EKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYL 747
C FY E+ + + E L V + +L +G+E CPY+ +R AI A++VV Y L
Sbjct: 153 CPFYNHEQMELLRDEILLE--VKDMEQLVALGKEAQACPYYGSRFAIPAAQLVVLPYPML 210
Query: 748 LDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN-IQTLEGTLK 806
L L + VV+ DEAHN+ + + S +N + +A +Q +E K
Sbjct: 211 LHAATRQAAGIRL-QGQVVIIDEAHNLIDTITNIHSTEVNGSQLCQAHSQLLQYMERYRK 269
Query: 807 EMKEAD 812
+K +
Sbjct: 270 RLKAKN 275
>gi|261188545|ref|XP_002620687.1| ATP-dependent RNA helicase chl1 [Ajellomyces dermatitidis SLH14081]
gi|239593171|gb|EEQ75752.1| ATP-dependent RNA helicase chl1 [Ajellomyces dermatitidis SLH14081]
Length = 851
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 10/103 (9%)
Query: 554 NYGQLLV-DIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVV 612
+YG ++ D +P F T + + + R+D ++I + G+ + + V+PDGVV
Sbjct: 561 SYGHVIPPDNLTAIPVSKGAFNTEFDF---TYGKRNDENMIIDLGRTIAALCRVIPDGVV 617
Query: 613 CFFTSYLYLESVVASWYDQG------IIDNLQKRKLLFIETQD 649
FF SY YL V+ W Q IID+++K K++F E+QD
Sbjct: 618 VFFPSYDYLNQVLVIWKKQAPNTRSNIIDSIEKSKVVFHESQD 660
Score = 46.6 bits (109), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 93/206 (45%), Gaps = 18/206 (8%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V I + ++G ++G+CPY+ +R I +++IV Y LL ++ L ++ VV+
Sbjct: 286 VRDIEDIGKIGSKIGVCPYYASRSIIKYSEIVTLPYPLLLQRSAREALNISL-KNHVVII 344
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 828
DEAHN+ + + S+ ++ ++ A+ + T K + + RLV +
Sbjct: 345 DEAHNLMDAISNIHSMSLSLTQVQLAIYQLTTYARKYKTRLSGRNRVYVTQVIRLVNSIS 404
Query: 829 D-----AQSARETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
D + + T+ VL P +I+ GK G+ + +R S+L + +
Sbjct: 405 DYLKTVLERKQPTEGVLQ----PSDIMTGK---GVDQINPHKLSRYLHESRLARKV---- 453
Query: 884 TDNLTNLSTEEAVQLSKRWLRQMAQP 909
D S+ E+ + + + Q++ P
Sbjct: 454 -DGFIEKSSMESQATTDKKVTQLSVP 478
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V I + ++G ++G+CPY+ +R I +++IV Y LL ++ L ++ VV+
Sbjct: 286 VRDIEDIGKIGSKIGVCPYYASRSIIKYSEIVTLPYPLLLQRSAREALNISL-KNHVVII 344
Query: 114 DEAHN----IDNVCVDSLSV 129
DEAHN I N+ SLS+
Sbjct: 345 DEAHNLMDAISNIHSMSLSL 364
>gi|239613258|gb|EEQ90245.1| ATP-dependent RNA helicase chl1 [Ajellomyces dermatitidis ER-3]
gi|327357445|gb|EGE86302.1| ATP-dependent RNA helicase chl1 [Ajellomyces dermatitidis ATCC
18188]
Length = 851
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 10/103 (9%)
Query: 554 NYGQLLV-DIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVV 612
+YG ++ D +P F T + + + R+D ++I + G+ + + V+PDGVV
Sbjct: 561 SYGHVIPPDNLTAIPVSKGAFNTEFDF---TYGKRNDENMIIDLGRTIAALCRVIPDGVV 617
Query: 613 CFFTSYLYLESVVASWYDQG------IIDNLQKRKLLFIETQD 649
FF SY YL V+ W Q IID+++K K++F E+QD
Sbjct: 618 VFFPSYDYLNQVLVIWKKQAPNTRSNIIDSIEKSKVVFHESQD 660
Score = 46.6 bits (109), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 93/206 (45%), Gaps = 18/206 (8%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V I + ++G ++G+CPY+ +R I +++IV Y LL ++ L ++ VV+
Sbjct: 286 VRDIEDIGKIGSKIGVCPYYASRSIIKYSEIVTLPYPLLLQRSAREALNISL-KNHVVII 344
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 828
DEAHN+ + + S+ ++ ++ A+ + T K + + RLV +
Sbjct: 345 DEAHNLMDAISNIHSMSLSLTQVQLAIYQLTTYARKYKTRLSGRNRVYVTQVIRLVNSIS 404
Query: 829 D-----AQSARETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
D + + T+ VL P +I+ GK G+ + +R S+L + +
Sbjct: 405 DYLKTVLERKQPTEGVLQ----PSDIMTGK---GVDQINPHKLSRYLHESRLARKV---- 453
Query: 884 TDNLTNLSTEEAVQLSKRWLRQMAQP 909
D S+ E+ + + + Q++ P
Sbjct: 454 -DGFIEKSSMESQATTDKKVTQLSVP 478
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V I + ++G ++G+CPY+ +R I +++IV Y LL ++ L ++ VV+
Sbjct: 286 VRDIEDIGKIGSKIGVCPYYASRSIIKYSEIVTLPYPLLLQRSAREALNISL-KNHVVII 344
Query: 114 DEAHN----IDNVCVDSLSV 129
DEAHN I N+ SLS+
Sbjct: 345 DEAHNLMDAISNIHSMSLSL 364
>gi|300176870|emb|CBK25439.2| unnamed protein product [Blastocystis hominis]
Length = 1177
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 12/110 (10%)
Query: 53 GVYSITKLKEMGRELGLCPY-----------FLARQAIIHAKIVVYSYHYLLDPKIANVV 101
GV I +K + + +CPY F+AR+ + ++I+ Y+Y++DP+I + +
Sbjct: 271 GVLDIEDMKRLCQRKNVCPYVCRIRFRIDVKFVARELMTKSQIIFAPYNYVIDPQIRDSM 330
Query: 102 SKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLK 151
S LA+SS ++FDEAHNI S + I R ++ + + LK
Sbjct: 331 SINLAKSS-IIFDEAHNILTTARSSAGMTIKLREFQEKTNHFISFMSLLK 379
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 12/110 (10%)
Query: 708 GVYSITKLKEMGRELGLCPY-----------FLARQAIIHAKIVVYSYHYLLDPKIANVV 756
GV I +K + + +CPY F+AR+ + ++I+ Y+Y++DP+I + +
Sbjct: 271 GVLDIEDMKRLCQRKNVCPYVCRIRFRIDVKFVARELMTKSQIIFAPYNYVIDPQIRDSM 330
Query: 757 SKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLK 806
S LA+SS ++FDEAHNI S + I R ++ + + LK
Sbjct: 331 SINLAKSS-IIFDEAHNILTTARSSAGMTIKLREFQEKTNHFISFMSLLK 379
Score = 46.2 bits (108), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
++ R + + G +L+D V+P GVV FF SY L ++ W ID L + K +
Sbjct: 610 YQNRSNPLYMDAVGDVLLDCVQVIPAGVVFFFPSYSVLNQFLSYWKKTKFIDRLSQIKQV 669
Query: 644 FIETQDALDSRSV 656
+IE +DA+ +V
Sbjct: 670 YIEQRDAVGFSAV 682
>gi|222642047|gb|EEE70179.1| hypothetical protein OsJ_30256 [Oryza sativa Japonica Group]
Length = 1456
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 11/142 (7%)
Query: 35 CDFYEKFDAVGREAPLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 90
C Y+ + R L G V+ I L +GR++ CPYF A+ A++V Y+
Sbjct: 151 CPEYKNAQKLSRHPSLQIGGCYEVHDIEDLVRVGRKVKGCPYFAAQTMAEAAQLVFCPYN 210
Query: 91 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 150
YL+ P + + ++ R S++V DEAHNI+++ D+ S ++ ++ + Q LEG +
Sbjct: 211 YLISPIVRRAMDIDI-RGSIIVLDEAHNIEDIARDAGSFDVDEESL---LFLRQELEGLV 266
Query: 151 KEMKEADSAKLREEYARLVEGL 172
+ EA AK+ E +++GL
Sbjct: 267 TD--EA-VAKIYEPLHEVIQGL 285
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 11/142 (7%)
Query: 690 CDFYEKFDAVGREAPLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 745
C Y+ + R L G V+ I L +GR++ CPYF A+ A++V Y+
Sbjct: 151 CPEYKNAQKLSRHPSLQIGGCYEVHDIEDLVRVGRKVKGCPYFAAQTMAEAAQLVFCPYN 210
Query: 746 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 805
YL+ P + + ++ R S++V DEAHNI+++ D+ S ++ ++ + Q LEG +
Sbjct: 211 YLISPIVRRAMDIDI-RGSIIVLDEAHNIEDIARDAGSFDVDEESL---LFLRQELEGLV 266
Query: 806 KEMKEADSAKLREEYARLVEGL 827
+ EA AK+ E +++GL
Sbjct: 267 TD--EA-VAKIYEPLHEVIQGL 285
>gi|389594205|ref|XP_003722349.1| putative helicase [Leishmania major strain Friedlin]
gi|321438847|emb|CBZ12607.1| putative helicase [Leishmania major strain Friedlin]
Length = 953
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 25/132 (18%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA-- 485
+ + V FP++ YP Q +M + K L + LLE P+GTGKT LL + +++A
Sbjct: 7 VSGITVSFPFD-PYPAQVEFMRSVVKCLQNGFNGLLESPTGTGKTLCLLCSTLGWLSATS 65
Query: 486 ------HPLDVT---------KLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLV 530
H D K++YCSRT ++ +VV EL R + + M V
Sbjct: 66 QGAVLRHASDQDQKGRGKHNHKVVYCSRTHAQLTQVVRELKR-----TSYAQRFTMA--V 118
Query: 531 LSSRKNLCIHSE 542
L SR+++C++ E
Sbjct: 119 LGSREHMCLNKE 130
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 35 CDFYEKFDAVGREAPLAP---GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 91
C F+ + A L P V+ + L G G CPYF R A A +V+ Y+Y
Sbjct: 153 CRFFSGLQSAAAGASLLPPECAVHDMEDLMREGSRSGFCPYFHERDAAKDADVVLMPYNY 212
Query: 92 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 126
+LDP + + ELA + +++ DEAHN+ +V S
Sbjct: 213 VLDPSLHKQLPFELA-NCILIVDEAHNLPSVLSSS 246
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 690 CDFYEKFDAVGREAPLAP---GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
C F+ + A L P V+ + L G G CPYF R A A +V+ Y+Y
Sbjct: 153 CRFFSGLQSAAAGASLLPPECAVHDMEDLMREGSRSGFCPYFHERDAAKDADVVLMPYNY 212
Query: 747 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 781
+LDP + + ELA + +++ DEAHN+ +V S
Sbjct: 213 VLDPSLHKQLPFELA-NCILIVDEAHNLPSVLSSS 246
>gi|293350107|ref|XP_001070646.2| PREDICTED: probable ATP-dependent RNA helicase DDX11 [Rattus
norvegicus]
Length = 845
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDGV----VCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD + +C S LE ++ R+ ++ G++L ++ VVP G+
Sbjct: 581 VVEFSCGHVIPPDNILPLIICSGPSNQQLEFTYQRRELPQMMEETGRILCNLCNVVPGGM 640
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCF SY YL V A W G++ L RK +F E + A
Sbjct: 641 VCFLPSYEYLRQVHAHWDKTGLLARLSVRKKIFQEPKRA 679
Score = 45.8 bits (107), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 23 RDRHKA---GENIP---------VCDFY--EKFDAVGREAPLAPGVYSITKLKEMGRELG 68
R +HK GE+ P C FY E+ + + E L V + +L +G+E
Sbjct: 221 RRKHKKMRIGEDKPKRRRQKMQASCPFYNHEQMELLRDEILLE--VKDMEQLVALGKEAQ 278
Query: 69 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 128
CPY+ +R AI A++VV Y LL L + VV+ DEAHN+ + + S
Sbjct: 279 ACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRL-QGQVVIIDEAHNLIDTITNIHS 337
Query: 129 VRINRRTIEKAVGN-IQTLEGTLKEMKEAD 157
+N + +A +Q +E K +K +
Sbjct: 338 TEVNGSQLCQAHSQLLQYMERYRKRLKAKN 367
Score = 45.8 bits (107), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 678 RDRHKA---GENIP---------VCDFY--EKFDAVGREAPLAPGVYSITKLKEMGRELG 723
R +HK GE+ P C FY E+ + + E L V + +L +G+E
Sbjct: 221 RRKHKKMRIGEDKPKRRRQKMQASCPFYNHEQMELLRDEILLE--VKDMEQLVALGKEAQ 278
Query: 724 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 783
CPY+ +R AI A++VV Y LL L + VV+ DEAHN+ + + S
Sbjct: 279 ACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRL-QGQVVIIDEAHNLIDTITNIHS 337
Query: 784 VRINRRTIEKAVGN-IQTLEGTLKEMKEAD 812
+N + +A +Q +E K +K +
Sbjct: 338 TEVNGSQLCQAHSQLLQYMERYRKRLKAKN 367
>gi|342180293|emb|CCC89770.1| putative helicase [Trypanosoma congolense IL3000]
Length = 965
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 19/126 (15%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN--- 484
ID++ V FP+ Y Q YM + ++L + LLE P+GTGKT LL +A++
Sbjct: 6 IDNIEVAFPFS-PYTVQVEYMQAVLRSLKGAHNALLESPTGTGKTMCLLCATLAWLEDWR 64
Query: 485 --------AHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKN 536
P + +++YCSRT ++ +V+ E R +++ +M VL SR +
Sbjct: 65 AYCRSNGFNDPTLLRRVVYCSRTHAQLTQVIREFER-----TRYSSCFSMA--VLGSRDH 117
Query: 537 LCIHSE 542
+C++ +
Sbjct: 118 MCVNPQ 123
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V+ + L + G++ GLCPYF R A IV Y+Y+ D + + EL+ S+++
Sbjct: 168 VHDMEDLVKEGQKCGLCPYFYERDKARDADIVFLPYNYVFDTSLRKQLPFELS-GSILIV 226
Query: 114 DEAHNIDNV 122
DEAHN+ +V
Sbjct: 227 DEAHNLPSV 235
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V+ + L + G++ GLCPYF R A IV Y+Y+ D + + EL+ S+++
Sbjct: 168 VHDMEDLVKEGQKCGLCPYFYERDKARDADIVFLPYNYVFDTSLRKQLPFELS-GSILIV 226
Query: 769 DEAHNIDNV 777
DEAHN+ +V
Sbjct: 227 DEAHNLPSV 235
>gi|240254129|ref|NP_173495.5| RAD3-like DNA-binding helicase protein [Arabidopsis thaliana]
gi|332191893|gb|AEE30014.1| RAD3-like DNA-binding helicase protein [Arabidopsis thaliana]
Length = 1175
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 107/219 (48%), Gaps = 25/219 (11%)
Query: 35 CDFYEKFDAVGREAPLAP----GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 90
C ++ + + L P V+ I L ++G+ + CPYF + +A++V Y
Sbjct: 214 CSEFKNVNKITSHPSLQPRGHNEVHDIEDLVKVGKNVRGCPYFASWSMAENAQLVFCPYS 273
Query: 91 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 150
Y+++P I V +L + ++++FDEAHN++++ ++ S+ + T+ K L+ L
Sbjct: 274 YIVNPVIRAGVEVDL-KGAIIIFDEAHNMEDIAREAGSINLEEDTLFK-------LQNEL 325
Query: 151 KEMKEADSAKLREEYARLVEGL-------RDAQSARETDVVLANPVLPDEILQEVVPGNI 203
++M A + + +VEGL +D+ + R+ ++ D+ L+E+ NI
Sbjct: 326 EQMSVAQPM-IYQPLCEVVEGLISWIGRKKDSLAKRDFQHYFSS-WTGDKALRELEESNI 383
Query: 204 RTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDIS 242
T E F L+ F + ++T ++ ES +L IS
Sbjct: 384 -TRECFPILLECFTKAIRTS---KEAEMESDMLYLSGIS 418
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 73/142 (51%), Gaps = 13/142 (9%)
Query: 690 CDFYEKFDAVGREAPLAP----GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 745
C ++ + + L P V+ I L ++G+ + CPYF + +A++V Y
Sbjct: 214 CSEFKNVNKITSHPSLQPRGHNEVHDIEDLVKVGKNVRGCPYFASWSMAENAQLVFCPYS 273
Query: 746 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 805
Y+++P I V +L + ++++FDEAHN++++ ++ S+ + T+ K L+ L
Sbjct: 274 YIVNPVIRAGVEVDL-KGAIIIFDEAHNMEDIAREAGSINLEEDTLFK-------LQNEL 325
Query: 806 KEMKEADSAKLREEYARLVEGL 827
++M A + + +VEGL
Sbjct: 326 EQMSVAQPM-IYQPLCEVVEGL 346
Score = 45.1 bits (105), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAK---GHC--LLEMPSGTGKTTSLLSLIVA 481
I L V FPY+ Y Q A+M + LD GHC LLE P+GTGK+ SLL ++A
Sbjct: 28 QIGGLQVEFPYQ-PYGTQLAFMSRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSVLA 86
Query: 482 YMNAHPLDVTKL-LYCSRTVPE 502
+ + + K L S+ PE
Sbjct: 87 WQQNYKSRLLKGNLSHSKAAPE 108
>gi|336466792|gb|EGO54956.1| hypothetical protein NEUTE1DRAFT_147626 [Neurospora tetrasperma
FGSC 2508]
gi|350288617|gb|EGZ69853.1| DNA repair helicase [Neurospora tetrasperma FGSC 2509]
Length = 1068
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW--YDQG-----IID 635
F R + ++I G +L+++ VVPDGVV FF SY YLE V+ W ++Q I +
Sbjct: 772 TFAKRSNPNMINRLGLVLLNLCSVVPDGVVAFFPSYGYLEEVIGVWKTHEQAMGPKTIWE 831
Query: 636 NLQKRKLLFIETQDALDSRSVSKERD 661
L+ +K LFI+++ +++ K D
Sbjct: 832 RLESKKALFIDSKTESSEQTLQKYSD 857
Score = 47.0 bits (110), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 538 CIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVF 584
C F R + ++I G +L+++ VVPDGVV FF SY YLE V
Sbjct: 768 CFDFTFAKRSNPNMINRLGLVLLNLCSVVPDGVVAFFPSYGYLEEVI 814
Score = 46.6 bits (109), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I L + G++L +CPY+ +R AI A+++ Y LL + +L ++V+ DEA
Sbjct: 446 IEDLYQTGKQLQICPYYASRAAIPGAEVITLPYPLLLQKSAREALGIKL-EGNIVIIDEA 504
Query: 117 HNIDNVCVDSLSVRINRRTIEKA 139
HNI + + + I +++A
Sbjct: 505 HNIMDAVSNVHAAEIKYTDLKRA 527
Score = 46.6 bits (109), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I L + G++L +CPY+ +R AI A+++ Y LL + +L ++V+ DEA
Sbjct: 446 IEDLYQTGKQLQICPYYASRAAIPGAEVITLPYPLLLQKSAREALGIKL-EGNIVIIDEA 504
Query: 772 HNIDNVCVDSLSVRINRRTIEKA 794
HNI + + + I +++A
Sbjct: 505 HNIMDAVSNVHAAEIKYTDLKRA 527
>gi|350414537|ref|XP_003490348.1| PREDICTED: regulator of telomere elongation helicase 1 homolog
[Bombus impatiens]
Length = 980
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
C +Y ++ + V I L + G++ CPYFL+R+ +A I Y+YLL
Sbjct: 176 TCFYYNNVESRKDDPLFKQEVLDIEDLVKAGQKFKCCPYFLSRELKQNADITFMPYNYLL 235
Query: 94 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
D K ++ ++++++ DEAHNI+ C ++ S++I
Sbjct: 236 DSKSRKTQGIDI-QNNIILLDEAHNIEKTCEEAASLQI 272
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
C +Y ++ + V I L + G++ CPYFL+R+ +A I Y+YLL
Sbjct: 176 TCFYYNNVESRKDDPLFKQEVLDIEDLVKAGQKFKCCPYFLSRELKQNADITFMPYNYLL 235
Query: 749 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
D K ++ ++++++ DEAHNI+ C ++ S++I
Sbjct: 236 DSKSRKTQGIDI-QNNIILLDEAHNIEKTCEEAASLQI 272
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V + PDG L S F TR+D I + G+ +++ +C++P G++ FF
Sbjct: 510 QICVGVLSQGPDGYS--------LNSSFNTRNDPKYIASLGRTVLNFSCIIPHGLLVFFP 561
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRC 669
SY ++ W G+ + RK +++E Q +V E KI D C
Sbjct: 562 SYPIMKKCKEEWQTTGLWTKIADRKPIYVEPQYRDGFINVMNEYYEKIKDPSC 614
Score = 41.2 bits (95), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 490 VTKLLYCSRTVPEIEKVVEELA-----RLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFE 544
V ++ S T+ ++ + EL +L + +I ++I G++ ++S F
Sbjct: 472 VRSIILTSGTLSPLKPFISELGIPIELQLENPHIVKGDQI-CVGVLSQGPDGYSLNSSFN 530
Query: 545 TRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 577
TR+D I + G+ +++ +C++P G++ FF SY
Sbjct: 531 TRNDPKYIASLGRTVLNFSCIIPHGLLVFFPSY 563
>gi|297850494|ref|XP_002893128.1| hypothetical protein ARALYDRAFT_472311 [Arabidopsis lyrata subsp.
lyrata]
gi|297338970|gb|EFH69387.1| hypothetical protein ARALYDRAFT_472311 [Arabidopsis lyrata subsp.
lyrata]
Length = 1138
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 88/164 (53%), Gaps = 20/164 (12%)
Query: 53 GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVV 112
GV+ I L ++G+ + CPYF + + + A++V Y Y++DP I V+ + A +++
Sbjct: 211 GVHDIEDLVKIGKTVTGCPYFASWKMLEVAQLVFCPYSYIIDPVIRGGVNLQGA---III 267
Query: 113 FDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL 172
FDEAHN++++ ++ S+ + + K L+ L+++ E + ++ E +VEGL
Sbjct: 268 FDEAHNMEDIAREAGSINMEEDILFK-------LKNELEQVSE-NEPEIYESLYIVVEGL 319
Query: 173 -------RDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHF 209
+D+ R+++ +N D L+E+ NI T E+F
Sbjct: 320 ISWIGRKKDSLVKRDSEHYFSN-WTGDRALKELKEFNI-TPENF 361
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 67/155 (43%), Gaps = 43/155 (27%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALD-----AKGHCLLEMPSGTGKTTSLLSLIVAY 482
I L V FPY+ Y Q A+M + LD H LLE P+GTGK+ SLL ++A+
Sbjct: 29 IGGLQVEFPYQ-PYGTQLAFMSRVISTLDRAQRDGHSHALLESPTGTGKSLSLLCSVLAW 87
Query: 483 MNA---------------HPLD-------------VTKLLYCSRTVPEIEKVVEELARLF 514
+ HP D + + Y SRT +I +V+ E
Sbjct: 88 QKSYKSRFPNGNLTHSRTHPSDNAASCNVEPPEPAIPTIYYASRTHAQITQVIRE----- 142
Query: 515 DYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDI 549
Y K + MT VL SRK C +S + ++++
Sbjct: 143 --YRKTGYRVPMT--VLGSRKRYCTNSHVQGKENV 173
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 708 GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVV 767
GV+ I L ++G+ + CPYF + + + A++V Y Y++DP I V+ + A +++
Sbjct: 211 GVHDIEDLVKIGKTVTGCPYFASWKMLEVAQLVFCPYSYIIDPVIRGGVNLQGA---III 267
Query: 768 FDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL 827
FDEAHN++++ ++ S+ + + K L+ L+++ E + ++ E +VEGL
Sbjct: 268 FDEAHNMEDIAREAGSINMEEDILFK-------LKNELEQVSE-NEPEIYESLYIVVEGL 319
>gi|359482607|ref|XP_002279773.2| PREDICTED: regulator of telomere elongation helicase 1-like [Vitis
vinifera]
Length = 1084
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 30/154 (19%)
Query: 7 GKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAP-LAPGVYSITKLKEMGR 65
G+ CHSL R R K G C Y + + P L I L +GR
Sbjct: 144 GRAQTNACHSL----CRKRTKKG----YCGHYSRVSDFMKYNPGLGDDPIDIEDLVNIGR 195
Query: 66 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVD 125
G CPY+++R+ I+ Y+YL+D +S +S+++FDEAHN++ +C D
Sbjct: 196 SNGPCPYYVSRELHKVVDILFAPYNYLIDRGNRKSLSV-CWNNSILIFDEAHNLEGLCAD 254
Query: 126 SLS--------------------VRINRRTIEKA 139
+ S + I+RR IEKA
Sbjct: 255 AASFDLPSWLLTACISEAKNCVDLSISRREIEKA 288
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 30/154 (19%)
Query: 662 GKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAP-LAPGVYSITKLKEMGR 720
G+ CHSL R R K G C Y + + P L I L +GR
Sbjct: 144 GRAQTNACHSL----CRKRTKKG----YCGHYSRVSDFMKYNPGLGDDPIDIEDLVNIGR 195
Query: 721 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVD 780
G CPY+++R+ I+ Y+YL+D +S +S+++FDEAHN++ +C D
Sbjct: 196 SNGPCPYYVSRELHKVVDILFAPYNYLIDRGNRKSLSV-CWNNSILIFDEAHNLEGLCAD 254
Query: 781 SLS--------------------VRINRRTIEKA 794
+ S + I+RR IEKA
Sbjct: 255 AASFDLPSWLLTACISEAKNCVDLSISRREIEKA 288
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 542 EFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLV 601
EF R + + + Q+ + P G C F S + TRD + + G +V
Sbjct: 464 EFPVRLENPHVISSNQIWAGVVPAGPSG--CSFNS------SYRTRDSLEYKQELGNAIV 515
Query: 602 DIACVVPDGVVCFFTSYLYLESVVASWYDQ 631
+ A +VPDG++ FF SY LE V W ++
Sbjct: 516 NFARIVPDGLLVFFPSYYILEQCVGCWKNK 545
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 488 LDVTKLLYCSRTVPEIEKVVEEL-----ARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
L V+ ++ S T+ +E +EL RL + ++ + +I G+V + +S
Sbjct: 439 LGVSSIILTSGTLSPLESFAQELKLEFPVRLENPHVISSNQI-WAGVVPAGPSGCSFNSS 497
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLE 581
+ TRD + + G +V+ A +VPDG++ FF SY LE
Sbjct: 498 YRTRDSLEYKQELGNAIVNFARIVPDGLLVFFPSYYILE 536
>gi|167999293|ref|XP_001752352.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696747|gb|EDQ83085.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 765
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Query: 7 GKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRE 66
G+ + C SLT +H G V D+ + +G E P+ I L ++G+
Sbjct: 151 GRAQNHACRSLTKGR-NCKHYNG----VADYAKNHPQLGEE-PI-----DIEDLVKIGKT 199
Query: 67 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 126
G CPYFL+R+ A I+ Y+YL++ ++ ++ ++++FDEAHN+ +C D+
Sbjct: 200 EGPCPYFLSRELHNSADILFVPYNYLIEKEMRRSLTGVSWGRTILIFDEAHNLARICADA 259
Query: 127 LS 128
S
Sbjct: 260 AS 261
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Query: 662 GKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRE 721
G+ + C SLT +H G V D+ + +G E P+ I L ++G+
Sbjct: 151 GRAQNHACRSLTKGR-NCKHYNG----VADYAKNHPQLGEE-PI-----DIEDLVKIGKT 199
Query: 722 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 781
G CPYFL+R+ A I+ Y+YL++ ++ ++ ++++FDEAHN+ +C D+
Sbjct: 200 EGPCPYFLSRELHNSADILFVPYNYLIEKEMRRSLTGVSWGRTILIFDEAHNLARICADA 259
Query: 782 LS 783
S
Sbjct: 260 AS 261
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMT----GLVLSSRKNLCIHSEF 543
+ V ++ S T+ +E EL FD +++ I+ + G+V + ++S +
Sbjct: 439 MGVRSVILTSGTLAPLESFAIELNLAFDVRLENPHVIDASQVWVGVVSNGPSGRPLNSSY 498
Query: 544 ETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDIS 591
+RD I G +V+ A +VPDGV+ FF SY L S E ++
Sbjct: 499 RSRDSIEYKLELGNTIVNFARIVPDGVLVFFPSYYLLNSCIEAWQTVT 546
Score = 46.6 bits (109), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%)
Query: 569 GVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW 628
GVV S L S + +RD I G +V+ A +VPDGV+ FF SY L S + +W
Sbjct: 483 GVVSNGPSGRPLNSSYRSRDSIEYKLELGNTIVNFARIVPDGVLVFFPSYYLLNSCIEAW 542
>gi|164429296|ref|XP_001728521.1| hypothetical protein NCU11409 [Neurospora crassa OR74A]
gi|206557740|sp|A7UXD4.1|CHL1_NEUCR RecName: Full=ATP-dependent RNA helicase chl-1; AltName:
Full=Chromosome loss protein 1
gi|157073424|gb|EDO65430.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 1073
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW--YDQG-----IID 635
F R + ++I G +L+++ VVPDGVV FF SY YLE V+ W ++Q I +
Sbjct: 772 TFAKRSNPNMINRLGLVLLNLCSVVPDGVVAFFPSYGYLEEVIGVWKTHEQAMGPKTIWE 831
Query: 636 NLQKRKLLFIETQDALDSRSVSKERD 661
L+ +K LFI+++ +++ K D
Sbjct: 832 RLESKKALFIDSKTESSEQTLQKYSD 857
Score = 47.0 bits (110), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 538 CIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVF 584
C F R + ++I G +L+++ VVPDGVV FF SY YLE V
Sbjct: 768 CFDFTFAKRSNPNMINRLGLVLLNLCSVVPDGVVAFFPSYGYLEEVI 814
Score = 46.2 bits (108), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I L + G++L +CPY+ +R AI A+++ Y LL + L ++V+ DEA
Sbjct: 446 IEDLYQTGKQLQICPYYASRAAIPGAEVITLPYPLLLQKSAREALGIRL-EGNIVIIDEA 504
Query: 117 HNIDNVCVDSLSVRINRRTIEKA 139
HNI + + + I +++A
Sbjct: 505 HNIMDAVSNVHAAEIKYTDLKRA 527
Score = 46.2 bits (108), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I L + G++L +CPY+ +R AI A+++ Y LL + L ++V+ DEA
Sbjct: 446 IEDLYQTGKQLQICPYYASRAAIPGAEVITLPYPLLLQKSAREALGIRL-EGNIVIIDEA 504
Query: 772 HNIDNVCVDSLSVRINRRTIEKA 794
HNI + + + I +++A
Sbjct: 505 HNIMDAVSNVHAAEIKYTDLKRA 527
>gi|198429884|ref|XP_002120239.1| PREDICTED: similar to BRIP1 [Ciona intestinalis]
Length = 1145
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 41/156 (26%)
Query: 417 MVRENYAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLL 476
M+ E + LMI + + FP++ YP Q + M + K L HCLLE P+G+GKT SLL
Sbjct: 1 MMEEKPHVELMIGGVKIHFPFK-PYPSQLSMMSMIVKGLQRSEHCLLESPTGSGKTLSLL 59
Query: 477 SLIVAYMNAHPLDVTK--------------------------------LLYCSRTVPEIE 504
+A+ + + K + + +RT +I
Sbjct: 60 CSALAWQQDLAMRLQKKEELYEQSNVDCAEEECCSIEQPPKEKEKVPTIWFGTRTHKQIA 119
Query: 505 KVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIH 540
++ ELA +NM+ +LSSR++ CIH
Sbjct: 120 QITHELA------TTQYRHVNMS--ILSSREHACIH 147
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 35 CDFYEKFDAVGREAPLA----PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 90
C FY+ + + A L + + L ++G + CPY+ AR+ A I+ Y+
Sbjct: 176 CIFYQNVNRLRSHASLKNCGITQAWDLEDLVKLGTRVKSCPYYAARELQKTASIIFCPYN 235
Query: 91 YLLDPKIANVVSKELARSSVVVFDEAHNIDN 121
YL+DP I + + +L ++ +V+ DEAHNI++
Sbjct: 236 YLIDPSIRSSMQIDL-QNDIVILDEAHNIED 265
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 690 CDFYEKFDAVGREAPLA----PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 745
C FY+ + + A L + + L ++G + CPY+ AR+ A I+ Y+
Sbjct: 176 CIFYQNVNRLRSHASLKNCGITQAWDLEDLVKLGTRVKSCPYYAARELQKTASIIFCPYN 235
Query: 746 YLLDPKIANVVSKELARSSVVVFDEAHNIDN 776
YL+DP I + + +L ++ +V+ DEAHNI++
Sbjct: 236 YLIDPSIRSSMQIDL-QNDIVILDEAHNIED 265
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L++ ++ + + G+L+ + VVP GV+CFF+SY LE + W + G+ ++ +
Sbjct: 518 LQATYQNTNSLDFQDELGKLVQSVCNVVPYGVLCFFSSYKMLEKLCERWKNTGLWYDICQ 577
Query: 640 RKLLFIE 646
+K + E
Sbjct: 578 KKEIVCE 584
>gi|448628475|ref|ZP_21672244.1| helicase [Haloarcula vallismortis ATCC 29715]
gi|445758006|gb|EMA09331.1| helicase [Haloarcula vallismortis ATCC 29715]
Length = 725
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 94/224 (41%), Gaps = 21/224 (9%)
Query: 647 TQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLA 706
+ +A+++R+ E + D R T S D + + +FY A L
Sbjct: 149 SSEAMEARNAVVEELRDLQDEREEIETERSTCDHYYRNLTVDTSEFY---------AWLF 199
Query: 707 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS-- 764
V + + E E GLC Y L ++A+ +VV +YH+LLDP I + R
Sbjct: 200 DDVRTPDDVYEYAHEQGLCGYELLKEAMDGVDLVVCNYHHLLDPTIREQFFHWIGRDPED 259
Query: 765 -VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK----EADSAKLREE 819
+ VFDEAHN+++ D + T+++A+ + + E + E L E
Sbjct: 260 IIAVFDEAHNVESAARDHARRTLTENTLDQAILELDSEEDARADAAANVIETFRDALVEA 319
Query: 820 YARLVE-GLRDAQSARETDVVLANPVLPDEI----LQGKTDYGI 858
Y E G R A D+ +AN D++ LQG T G
Sbjct: 320 YEDSFEFGARAAVDEHWDDITIANDDRKDDLTLAFLQGYTGPGF 363
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHN 118
E E GLC Y L ++A+ +VV +YH+LLDP I + R + VFDEAHN
Sbjct: 210 EYAHEQGLCGYELLKEAMDGVDLVVCNYHHLLDPTIREQFFHWIGRDPEDIIAVFDEAHN 269
Query: 119 IDNVCVDSLSVRINRRTIEKAV 140
+++ D + T+++A+
Sbjct: 270 VESAARDHARRTLTENTLDQAI 291
>gi|448388166|ref|ZP_21565106.1| DEAD/DEAH box helicase [Haloterrigena salina JCM 13891]
gi|445670817|gb|ELZ23414.1| DEAD/DEAH box helicase [Haloterrigena salina JCM 13891]
Length = 716
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 94/222 (42%), Gaps = 24/222 (10%)
Query: 657 SKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPVCDFYEKF---DAVGREAPLAPGVYSI 712
S++ DG D R + + +R + E VCD+Y D A L V +
Sbjct: 137 SQDGDGGAADARSAVMDELEDIEERLEDLEEQNVCDYYRNNLTRDTDDFFAWLFEDVRTP 196
Query: 713 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFD 769
++ E G C Y L ++ I +VV +YH+LLD I + L R + VFD
Sbjct: 197 DEIYEYAEREGFCGYELLKEGIEGVDLVVCNYHHLLDSTIREQFFRWLGRDPEDVIAVFD 256
Query: 770 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYAR-LVEGLR 828
EAHN+++ + + + RT + A+ + + E D+A + + R LVE
Sbjct: 257 EAHNVEDAAREHATRTCSERTFDSALDELADADDPRSE----DAANVLSAFHRALVETYE 312
Query: 829 DAQSARE--------TDVVLANPVLPD----EILQGKTDYGI 858
D+ S E DV +AN D E LQ + GI
Sbjct: 313 DSFSFGERERIDENWDDVPIANEDRKDDLTLEFLQRYSGRGI 354
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 20/214 (9%)
Query: 2 SKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPVCDFYEKF---DAVGREAPLAPGVYSI 57
S++ DG D R + + +R + E VCD+Y D A L V +
Sbjct: 137 SQDGDGGAADARSAVMDELEDIEERLEDLEEQNVCDYYRNNLTRDTDDFFAWLFEDVRTP 196
Query: 58 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFD 114
++ E G C Y L ++ I +VV +YH+LLD I + L R + VFD
Sbjct: 197 DEIYEYAEREGFCGYELLKEGIEGVDLVVCNYHHLLDSTIREQFFRWLGRDPEDVIAVFD 256
Query: 115 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYAR-LVEGLR 173
EAHN+++ + + + RT + A+ + + E D+A + + R LVE
Sbjct: 257 EAHNVEDAAREHATRTCSERTFDSALDELADADDPRSE----DAANVLSAFHRALVETYE 312
Query: 174 DAQSARE--------TDVVLANPVLPDEILQEVV 199
D+ S E DV +AN D++ E +
Sbjct: 313 DSFSFGERERIDENWDDVPIANEDRKDDLTLEFL 346
>gi|15790405|ref|NP_280229.1| helicase [Halobacterium sp. NRC-1]
gi|169236139|ref|YP_001689339.1| DNA repair helicase [Halobacterium salinarum R1]
gi|10580891|gb|AAG19709.1| helicase [Halobacterium sp. NRC-1]
gi|167727205|emb|CAP13991.1| DNA repair helicase Rad3 [Halobacterium salinarum R1]
Length = 800
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 64 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 123
G + G CP+ + + + HA++VV +Y++L DP+ + + S+ VV DEAH ++
Sbjct: 256 GVDHGTCPHRVQQVLLDHAEVVVGNYNHLFDPQTRGLTDHLIDDSTFVVVDEAHRLEERV 315
Query: 124 VDSLSVRINRRTIEKAVGNIQTL 146
D LS R+ R T+ +A + +TL
Sbjct: 316 RDLLSDRLGRHTLTRARNDCRTL 338
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 719 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVC 778
G + G CP+ + + + HA++VV +Y++L DP+ + + S+ VV DEAH ++
Sbjct: 256 GVDHGTCPHRVQQVLLDHAEVVVGNYNHLFDPQTRGLTDHLIDDSTFVVVDEAHRLEERV 315
Query: 779 VDSLSVRINRRTIEKAVGNIQTL 801
D LS R+ R T+ +A + +TL
Sbjct: 316 RDLLSDRLGRHTLTRARNDCRTL 338
>gi|167384070|ref|XP_001736798.1| regulator of telomere elongation helicase 1 rtel1 [Entamoeba dispar
SAW760]
gi|165900684|gb|EDR26949.1| regulator of telomere elongation helicase 1 rtel1, putative
[Entamoeba dispar SAW760]
Length = 1030
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 20/121 (16%)
Query: 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLL 494
FPY+ Y Q M +++A+ H L+E P+GTGKT LL + + + +++
Sbjct: 85 FPYQPPYQPQIEMMNSIQQAVKEGKHLLMESPTGTGKTLVLLHSTLTFPDM------RIV 138
Query: 495 YCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRN 554
Y SRT ++ +VV E ++ D + G+VL+SR CI++ DD +N
Sbjct: 139 YASRTHSQLAQVVNETKKIGD----------IKGIVLASRDLYCIYNPIRICDD----KN 184
Query: 555 Y 555
Y
Sbjct: 185 Y 185
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 569 GVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW 628
G F S+++ + +T D +I G + + P G + FF SY L VV W
Sbjct: 540 GSSSFGKSFIFTK---KTSQDNEMIEQAGNTMFRVLSKSPGGGLVFFASYSMLNRVVELW 596
Query: 629 YDQGIIDNLQKRKLLFIETQDALDSRSVSKE 659
QG+ L K K +FIE++D + + KE
Sbjct: 597 KQQGVYTQLNKLKAIFIESKDKNEFKKDFKE 627
Score = 47.8 bits (112), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 34/189 (17%)
Query: 723 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIAN------VVSKELARSS-VVVFDEAHNID 775
LCPY+ +R A +K+++ Y+++ I + + ++ R V+V DEAHN++
Sbjct: 247 NLCPYYYSRWATKRSKLILCPYNFVTSVSIRHSSDIFLIDENDIHRHEFVLVMDEAHNVE 306
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEA-DSAKLREEYARLVEGLRDAQSAR 834
+ +DSL+ + + + IQ + +K+ E S L E +E
Sbjct: 307 DAFMDSLTFTFTETLLNRTIETIQFHQKRIKQTPENFRSFSLLGELISTIESF------- 359
Query: 835 ETDVVLANPVLP----DEILQGKTDYGIMIFADKRF----ARSDKRSKLPKWIQEY--LT 884
+ + N LP ++ L G +F D+ F RS ++L + I EY L
Sbjct: 360 --SIWMENRSLPFKDSEQCLYG-------VFEDQAFLPFIERSPSSTRLTEAIFEYIKLV 410
Query: 885 DNLTNLSTE 893
DNL +L E
Sbjct: 411 DNLDDLIQE 419
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 68 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIAN------VVSKELARSS-VVVFDEAHNID 120
LCPY+ +R A +K+++ Y+++ I + + ++ R V+V DEAHN++
Sbjct: 247 NLCPYYYSRWATKRSKLILCPYNFVTSVSIRHSSDIFLIDENDIHRHEFVLVMDEAHNVE 306
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKE 155
+ +DSL+ + + + IQ + +K+ E
Sbjct: 307 DAFMDSLTFTFTETLLNRTIETIQFHQKRIKQTPE 341
>gi|448655339|ref|ZP_21682191.1| helicase [Haloarcula californiae ATCC 33799]
gi|445765788|gb|EMA16926.1| helicase [Haloarcula californiae ATCC 33799]
Length = 732
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 83/202 (41%), Gaps = 13/202 (6%)
Query: 717 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHN 773
E + GLC Y L ++ + +VV +YH+LLDP I + R + VFDEAHN
Sbjct: 217 EYAHQQGLCGYELLKEGMDGVDLVVCNYHHLLDPTIREQFFHWIGRDPEDIIAVFDEAHN 276
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK----EADSAKLREEYARLVE-GLR 828
+++ D + T+++A+ + E + E L E Y V G R
Sbjct: 277 VESAARDHARRTLTENTLDQALDELDNEEDARTDAAANVIETFRDALVEAYEDSVGFGGR 336
Query: 829 DAQSARETDVVLANPVLPDEI----LQGKTDYGIMIFADKRFARS-DKRSKLPKWIQEYL 883
+A D+ +AN D++ LQG T G D A D ++ + +E
Sbjct: 337 EAVDEHWDDITIANDDRKDDLTLAFLQGYTGPGFHEELDHALALGRDLDARYQEAFKEGD 396
Query: 884 TDNLTNLSTEEAVQLSKRWLRQ 905
D T +A WL +
Sbjct: 397 LDTRKECQTLQAAGFISDWLDE 418
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 14/117 (11%)
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHN 118
E + GLC Y L ++ + +VV +YH+LLDP I + R + VFDEAHN
Sbjct: 217 EYAHQQGLCGYELLKEGMDGVDLVVCNYHHLLDPTIREQFFHWIGRDPEDIIAVFDEAHN 276
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDA 175
+++ D RRT+ + TL+ L E+ + A+ + A ++E RDA
Sbjct: 277 VESAARDHA-----RRTLTE-----NTLDQALDELDNEEDART-DAAANVIETFRDA 322
>gi|91773529|ref|YP_566221.1| Rad3-related DNA helicases [Methanococcoides burtonii DSM 6242]
gi|91712544|gb|ABE52471.1| DEAD/DEAH box helicase domain protein [Methanococcoides burtonii
DSM 6242]
Length = 726
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 74/143 (51%), Gaps = 15/143 (10%)
Query: 723 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELAR---SSVVVFDEAHNIDNVCV 779
G+C Y L ++ + HA +++ +YH++L+P I + V + + ++V+FDEAHN+++
Sbjct: 214 GMCGYELVKRELKHADLLICNYHHVLNPDIFSTVLGWIEKEPQETIVIFDEAHNLESAAR 273
Query: 780 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEY---------ARLVEGLRDA 830
S+ + +IEKA I LE L + + + L + +R G R+
Sbjct: 274 SHSSLSLTEHSIEKA---ITELEANLDLLADDNIHNLFNIFLEVISDTYNSRFKFGERER 330
Query: 831 QSARETDVVLANPVLPDEILQGK 853
D+ +++P ++I++GK
Sbjct: 331 VRKNWYDIRISDPYERNDIVRGK 353
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 68 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELAR---SSVVVFDEAHNIDNVCV 124
G+C Y L ++ + HA +++ +YH++L+P I + V + + ++V+FDEAHN+++
Sbjct: 214 GMCGYELVKRELKHADLLICNYHHVLNPDIFSTVLGWIEKEPQETIVIFDEAHNLESAAR 273
Query: 125 DSLSVRINRRTIEKAVGNIQT 145
S+ + +IEKA+ ++
Sbjct: 274 SHSSLSLTEHSIEKAITELEA 294
>gi|32398845|emb|CAD98555.1| similar to helicase-like protein nhl, possible [Cryptosporidium
parvum]
Length = 1100
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%)
Query: 575 TSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGII 634
T+ +L +E R++ S + G ++ D +PDG++ FF SY ++ V W DQG+I
Sbjct: 598 TNNTHLIGSYEARNNPSYFSSLGSVVFDCVKRIPDGILLFFGSYSLMDQAVKHWTDQGLI 657
Query: 635 DNLQKRKLLFIETQDALDSRSV 656
+ ++ K +FIE +++ + SV
Sbjct: 658 ERIKAFKSVFIEPRNSFELGSV 679
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
+I+ V FPY+ Y Q YM ++ +L K H LLE P+GTGKT LL+ +A+
Sbjct: 9 LIEGYSVPFPYD-AYKCQINYMQKILYSLKYKKHALLESPTGTGKTLCLLASTLAF 63
Score = 40.4 bits (93), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 69 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 128
CP++ R+ +V+ Y+YLLD + +L ++V++ DEAHN+++V ++ S
Sbjct: 252 FCPFYATREIESVCNVVLLPYNYLLDSITRQNLKIDL-NNTVLILDEAHNVESVSEEAYS 310
Query: 129 V---RINRRTIEKAVGNI--QTLEGTLKEMKEAD 157
I+ +KA+ NI T G L+E KE+D
Sbjct: 311 FDLRDIDLALSQKAIQNILEATKLGLLQE-KESD 343
Score = 40.4 bits (93), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 724 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 783
CP++ R+ +V+ Y+YLLD + +L ++V++ DEAHN+++V ++ S
Sbjct: 252 FCPFYATREIESVCNVVLLPYNYLLDSITRQNLKIDL-NNTVLILDEAHNVESVSEEAYS 310
Query: 784 V---RINRRTIEKAVGNI--QTLEGTLKEMKEAD 812
I+ +KA+ NI T G L+E KE+D
Sbjct: 311 FDLRDIDLALSQKAIQNILEATKLGLLQE-KESD 343
>gi|118373403|ref|XP_001019895.1| hypothetical protein TTHERM_00588880 [Tetrahymena thermophila]
gi|89301662|gb|EAR99650.1| hypothetical protein TTHERM_00588880 [Tetrahymena thermophila
SB210]
Length = 1492
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLL 494
FP+E YP Q M E+ K L K + L + P+GTGKT +S +AY+ +P TK+L
Sbjct: 528 FPHENPYPNQLDSMQEIIKTLKNKKNLLFQSPTGTGKTLMTISSALAYVEQNP--NTKIL 585
Query: 495 YCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLC 538
+RT +I ++E+ + IK + IN +L+ R C
Sbjct: 586 LLTRTCEQINGFIKEIRK-----IKKFQGINRYS-ILAGRNQFC 623
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 50 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 109
+ P + I L + +ELG CPYF +++A AKIV +Y+Y++ I + V K L +S
Sbjct: 962 MLPDIEDINHLFQ-EKELG-CPYFYSKEAAKSAKIVYSTYNYVIKQHILSRV-KHLFENS 1018
Query: 110 --VVVFDEAHNIDNVCVDSLSVRINR 133
+V+FDE HNI + + IN+
Sbjct: 1019 DLIVIFDEGHNIAELAEQEQKLTINK 1044
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 705 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 764
+ P + I L + +ELG CPYF +++A AKIV +Y+Y++ I + V K L +S
Sbjct: 962 MLPDIEDINHLFQ-EKELG-CPYFYSKEAAKSAKIVYSTYNYVIKQHILSRV-KHLFENS 1018
Query: 765 --VVVFDEAHNIDNVCVDSLSVRINR 788
+V+FDE HNI + + IN+
Sbjct: 1019 DLIVIFDEGHNIAELAEQEQKLTINK 1044
>gi|337283773|ref|YP_004623247.1| DNA repair helicase rad3 [Pyrococcus yayanosii CH1]
gi|334899707|gb|AEH23975.1| DNA repair helicase rad3 [Pyrococcus yayanosii CH1]
Length = 641
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 62/112 (55%), Gaps = 10/112 (8%)
Query: 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKL 493
+FPYE + P Q ++ + A+ + ++E P+G GKT S+L+ I+ + A K+
Sbjct: 4 YFPYESLRPNQEEFIRLVSDAVRKGKNLIVEAPTGFGKTISVLAGILPHAIAMGY---KV 60
Query: 494 LYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFET 545
+Y +RT ++++V+EEL + + ++G+ SRK LC+H +T
Sbjct: 61 VYLARTHKQMDRVIEELKAI-------GRKAKVSGVEFRSRKELCLHPYIQT 105
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 65 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA---RSSVVVFDEAHNIDN 121
R L LCPY + R+ A ++V SY Y++ P I + L ++VFDEAHN+ +
Sbjct: 161 RLLELCPYEVTRRVGEKATVIVASYLYMVSPPIREAFLEGLGLEYSDLILVFDEAHNLPD 220
Query: 122 VCVDSLSVRINRRTIEKAVGNIQ 144
V +LS R++ R++E+AV Q
Sbjct: 221 QAVSALSDRLSLRSLERAVKEAQ 243
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 720 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA---RSSVVVFDEAHNIDN 776
R L LCPY + R+ A ++V SY Y++ P I + L ++VFDEAHN+ +
Sbjct: 161 RLLELCPYEVTRRVGEKATVIVASYLYMVSPPIREAFLEGLGLEYSDLILVFDEAHNLPD 220
Query: 777 VCVDSLSVRINRRTIEKAVGNIQ 799
V +LS R++ R++E+AV Q
Sbjct: 221 QAVSALSDRLSLRSLERAVKEAQ 243
>gi|392560811|gb|EIW53993.1| DNA repair helicase [Trametes versicolor FP-101664 SS1]
Length = 875
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L+ ++ R D +I GQ+L++ VVP G+V F SY +L +V W G+++ L
Sbjct: 629 LQFKYQQRGDEGLIAELGQILLNFTNVVPGGMVVFVPSYAFLNTVTKQWQAGGLLEKLNA 688
Query: 640 RKLLFIETQDALDSRSVSKERDGKIVDG 667
+K +F E Q + + +V ++ +I G
Sbjct: 689 KKKVFSEPQQSNEVEAVLRDYSAQIQSG 716
>gi|324503421|gb|ADY41490.1| Regulator of telomere elongation helicase 1 [Ascaris suum]
Length = 993
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 66/120 (55%), Gaps = 12/120 (10%)
Query: 35 CDFYEKFDAVGREA--------PLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVV 86
C +Y ++D +++ + P + I + G++ +CP++ R + A +++
Sbjct: 151 CRYYNEYDRQSKDSLEIIYNCNGMVPDIEDIVNI---GKKHSVCPFYRTRSLVDEADLLL 207
Query: 87 YSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 146
Y+Y++DP++ + L + ++V+FDEAHN++ +C +++SV + + + + +T+
Sbjct: 208 MPYNYVIDPRLRRMHDVGL-KGNIVIFDEAHNLEAICEEAVSVSFSSKELSGCIRETKTV 266
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 66/120 (55%), Gaps = 12/120 (10%)
Query: 690 CDFYEKFDAVGREA--------PLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVV 741
C +Y ++D +++ + P + I + G++ +CP++ R + A +++
Sbjct: 151 CRYYNEYDRQSKDSLEIIYNCNGMVPDIEDIVNI---GKKHSVCPFYRTRSLVDEADLLL 207
Query: 742 YSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 801
Y+Y++DP++ + L + ++V+FDEAHN++ +C +++SV + + + + +T+
Sbjct: 208 MPYNYVIDPRLRRMHDVGL-KGNIVIFDEAHNLEAICEEAVSVSFSSKELSGCIRETKTV 266
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 87/210 (41%), Gaps = 40/210 (19%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM-- 483
L I + V FPYE Y Q YM ++ + L + LE P+GTGKT LL +A+
Sbjct: 4 LQIGKISVEFPYE-PYDCQLLYMEKVIETLKRSFNAALESPTGTGKTLCLLCATIAFTKE 62
Query: 484 ---------NAHPLDVT------KLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTG 528
A+P T K++Y SRT ++ +VV EL + K
Sbjct: 63 MKSRISVDATANPQGTTPGSLYPKIIYASRTHSQLAQVVRELNKTVYKDTKT-------- 114
Query: 529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRD 588
L+SR LCI+ +V++ + C +V Y E +++D
Sbjct: 115 ATLASRDFLCINE--------TVMKEQNSTTKALMC---RNLVKNRKCRYYNEYDRQSKD 163
Query: 589 DISVIRNYGQLLVDIACVVPDG---VVCFF 615
+ +I N ++ DI +V G VC F
Sbjct: 164 SLEIIYNCNGMVPDIEDIVNIGKKHSVCPF 193
>gi|221488689|gb|EEE26903.1| DEAD_2 domain-containing protein [Toxoplasma gondii GT1]
Length = 2275
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 58 TKLKEMGREL----GLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVS-KELARSSVVV 112
+KL E R+L G CPY + A +VV Y+Y+LDP +A +L + SV++
Sbjct: 897 SKLFEKKRQLFAAAGACPYHATLALLPMADLVVCPYNYVLDPGVAASSKLNDLLKGSVII 956
Query: 113 FDEAHNIDNVCVD--SLSVRINR 133
FDE HN++++C D SL ++++R
Sbjct: 957 FDEGHNVESICRDAGSLDLQMHR 979
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 713 TKLKEMGREL----GLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVS-KELARSSVVV 767
+KL E R+L G CPY + A +VV Y+Y+LDP +A +L + SV++
Sbjct: 897 SKLFEKKRQLFAAAGACPYHATLALLPMADLVVCPYNYVLDPGVAASSKLNDLLKGSVII 956
Query: 768 FDEAHNIDNVCVD--SLSVRINR 788
FDE HN++++C D SL ++++R
Sbjct: 957 FDEGHNVESICRDAGSLDLQMHR 979
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 414 LLPMVRENYAMGL-MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKT 472
+LP ++ ++ G I L V Y P Q M + +A + H ++E P+GTGKT
Sbjct: 279 VLPRLKTSHIKGRETIRGLNVLLHYSSALPPQKEVMAAVIEACQTERHAIIESPTGTGKT 338
Query: 473 TSLLSLIVAYM-----NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMT 527
+LL +A+ A + +++YC+RT + +V+ EL +
Sbjct: 339 AALLCAGLAWQREAQREAQSRSIGRIIYCTRTQKQASQVIAELKK---------SPYQPA 389
Query: 528 GLVLSSRKNLC 538
+ L+SR +LC
Sbjct: 390 AVQLASRSHLC 400
>gi|66475604|ref|XP_627618.1| DNA repair helicase [Cryptosporidium parvum Iowa II]
gi|46229294|gb|EAK90143.1| DNA repair helicase [Cryptosporidium parvum Iowa II]
Length = 1108
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%)
Query: 575 TSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGII 634
T+ +L +E R++ S + G ++ D +PDG++ FF SY ++ V W DQG+I
Sbjct: 606 TNNTHLIGSYEARNNPSYFSSLGSVVFDCVKRIPDGILLFFGSYSLMDQAVKHWTDQGLI 665
Query: 635 DNLQKRKLLFIETQDALDSRSV 656
+ ++ K +FIE +++ + SV
Sbjct: 666 ERIKAFKSVFIEPRNSFELGSV 687
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
+I+ V FPY+ Y Q YM ++ +L K H LLE P+GTGKT LL+ +A+
Sbjct: 17 LIEGYSVPFPYD-AYKCQINYMQKILYSLKYKKHALLESPTGTGKTLCLLASTLAF 71
Score = 40.4 bits (93), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 69 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 128
CP++ R+ +V+ Y+YLLD + +L ++V++ DEAHN+++V ++ S
Sbjct: 260 FCPFYATREIESVCNVVLLPYNYLLDSITRQNLKIDL-NNTVLILDEAHNVESVSEEAYS 318
Query: 129 V---RINRRTIEKAVGNI--QTLEGTLKEMKEAD 157
I+ +KA+ NI T G L+E KE+D
Sbjct: 319 FDLRDIDLALSQKAIQNILEATKLGLLQE-KESD 351
Score = 40.4 bits (93), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 724 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 783
CP++ R+ +V+ Y+YLLD + +L ++V++ DEAHN+++V ++ S
Sbjct: 260 FCPFYATREIESVCNVVLLPYNYLLDSITRQNLKIDL-NNTVLILDEAHNVESVSEEAYS 318
Query: 784 V---RINRRTIEKAVGNI--QTLEGTLKEMKEAD 812
I+ +KA+ NI T G L+E KE+D
Sbjct: 319 FDLRDIDLALSQKAIQNILEATKLGLLQE-KESD 351
>gi|15791218|ref|NP_281042.1| helicase [Halobacterium sp. NRC-1]
gi|169236974|ref|YP_001690174.1| DNA repair helicase-like protein [Halobacterium salinarum R1]
gi|10581844|gb|AAG20522.1| helicase [Halobacterium sp. NRC-1]
gi|167728040|emb|CAP14828.1| DNA repair helicase Rad3 [Halobacterium salinarum R1]
Length = 732
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 66 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNV 122
E G C Y L + I + V +YH+LLDP I + L R VVVFDEAHNI++
Sbjct: 205 EAGFCGYELLKDGIEGVDLAVCNYHHLLDPGIRAQFFRWLGRDPEDVVVVFDEAHNIEDA 264
Query: 123 CVDSLSVRINRRTIEKAVGNIQ 144
D + + +T++ A+ +Q
Sbjct: 265 ARDHAAETLTEQTLDSALDELQ 286
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 721 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNV 777
E G C Y L + I + V +YH+LLDP I + L R VVVFDEAHNI++
Sbjct: 205 EAGFCGYELLKDGIEGVDLAVCNYHHLLDPGIRAQFFRWLGRDPEDVVVVFDEAHNIEDA 264
Query: 778 CVDSLSVRINRRTIEKAVGNIQ 799
D + + +T++ A+ +Q
Sbjct: 265 ARDHAAETLTEQTLDSALDELQ 286
>gi|440471332|gb|ELQ40355.1| DEAD_2 domain-containing protein [Magnaporthe oryzae Y34]
Length = 1458
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 25/116 (21%)
Query: 559 LVDIAC--VVPDGVVCFFT------------SYLYLESVFETRDDISVIRNYGQLLVDIA 604
+ ++C V+P +C +T S L+ E F+ R D ++I+ G +++I
Sbjct: 1131 ITKLSCGHVIPSSNLCVWTLASMRPATPAGNSDLF-EFSFQKRRDKTMIQQLGTAILNIC 1189
Query: 605 CVVPDGVVCFFTSYLYLESVVASWY----------DQGIIDNLQKRKLLFIETQDA 650
VPDGVV FF SY YL+ VVA+ + I D LQ RK +F ET+
Sbjct: 1190 SAVPDGVVVFFPSYGYLDEVVAALQQKLAATGTAPNSSIWDKLQSRKAVFRETKGG 1245
Score = 45.8 bits (107), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 485 AHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFE 544
+HP L C +P V LA + N ++ F+
Sbjct: 1125 SHPQHKITKLSCGHVIPSSNLCVWTLASMRPATPAGNSDL--------------FEFSFQ 1170
Query: 545 TRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
R D ++I+ G +++I VPDGVV FF SY YL+ V
Sbjct: 1171 KRRDKTMIQQLGTAILNICSAVPDGVVVFFPSYGYLDEV 1209
>gi|448354398|ref|ZP_21543155.1| DEAD/DEAH box helicase [Natrialba hulunbeirensis JCM 10989]
gi|445637915|gb|ELY91062.1| DEAD/DEAH box helicase [Natrialba hulunbeirensis JCM 10989]
Length = 718
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 631 QGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPV 689
+ ++D Q ++ L ++ L + S++ DG D R + S+ +R E+ V
Sbjct: 114 RAVVDAEQDKQQLERRQRELL---TESQQGDGGAADARSAVMDELESIEERLDDLEDQNV 170
Query: 690 CDFYEKF---DAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
CD+Y D L V + ++ E + LC Y L ++ I +VV +YH+
Sbjct: 171 CDYYRNNLTEDTDEFFGWLFEDVRTPDEIYEYAEQRHLCGYELLKEGIEGVDLVVCNYHH 230
Query: 747 LLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
LLD I + L R + VFDEAHN+++ + + + RT E A+ +
Sbjct: 231 LLDSTIREQFFRWLGRDPEDVIAVFDEAHNVEDAAREHATRTCSERTFESALDEL 285
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Query: 2 SKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPVCDFYEKF---DAVGREAPLAPGVYSI 57
S++ DG D R + S+ +R E+ VCD+Y D L V +
Sbjct: 137 SQQGDGGAADARSAVMDELESIEERLDDLEDQNVCDYYRNNLTEDTDEFFGWLFEDVRTP 196
Query: 58 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFD 114
++ E + LC Y L ++ I +VV +YH+LLD I + L R + VFD
Sbjct: 197 DEIYEYAEQRHLCGYELLKEGIEGVDLVVCNYHHLLDSTIREQFFRWLGRDPEDVIAVFD 256
Query: 115 EAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
EAHN+++ + + + RT E A+ +
Sbjct: 257 EAHNVEDAAREHATRTCSERTFESALDEL 285
>gi|440487319|gb|ELQ67113.1| DEAD_2 domain-containing protein [Magnaporthe oryzae P131]
Length = 1493
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 25/116 (21%)
Query: 559 LVDIAC--VVPDGVVCFFT------------SYLYLESVFETRDDISVIRNYGQLLVDIA 604
+ ++C V+P +C +T S L+ E F+ R D ++I+ G +++I
Sbjct: 1166 ITKLSCGHVIPSSNLCVWTLASMRPATPAGNSDLF-EFSFQKRRDKTMIQQLGTAILNIC 1224
Query: 605 CVVPDGVVCFFTSYLYLESVVASWY----------DQGIIDNLQKRKLLFIETQDA 650
VPDGVV FF SY YL+ VVA+ + I D LQ RK +F ET+
Sbjct: 1225 SAVPDGVVVFFPSYGYLDEVVAALQQKLAATGTAPNSSIWDKLQSRKAVFRETKGG 1280
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 3/165 (1%)
Query: 10 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGL 69
++ RC L S + K +P D + R+A LA + I ++G+ L +
Sbjct: 847 INDRCTELQKSKAKSEGKRCPYVPSQDNLSETHQF-RDASLAT-IPDIEDAHKLGKSLQV 904
Query: 70 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 129
CPY+ R AI A+IV Y LL + + EL + SVVV DEAHNI + S
Sbjct: 905 CPYYATRTAIPGAEIVTLPYPLLLQKSARDALGIEL-QGSVVVVDEAHNIMDAIAGVHSA 963
Query: 130 RINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRD 174
I + + + + +A++ + + AR+++GL +
Sbjct: 964 EIRLEDLRRGREMLSIYAKRFGKKLKAENRIMVGQVARVIQGLSE 1008
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 3/165 (1%)
Query: 665 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGL 724
++ RC L S + K +P D + R+A LA + I ++G+ L +
Sbjct: 847 INDRCTELQKSKAKSEGKRCPYVPSQDNLSETHQF-RDASLAT-IPDIEDAHKLGKSLQV 904
Query: 725 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 784
CPY+ R AI A+IV Y LL + + EL + SVVV DEAHNI + S
Sbjct: 905 CPYYATRTAIPGAEIVTLPYPLLLQKSARDALGIEL-QGSVVVVDEAHNIMDAIAGVHSA 963
Query: 785 RINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRD 829
I + + + + +A++ + + AR+++GL +
Sbjct: 964 EIRLEDLRRGREMLSIYAKRFGKKLKAENRIMVGQVARVIQGLSE 1008
Score = 46.2 bits (108), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 485 AHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFE 544
+HP L C +P V LA + N ++ F+
Sbjct: 1160 SHPQHKITKLSCGHVIPSSNLCVWTLASMRPATPAGNSDL--------------FEFSFQ 1205
Query: 545 TRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
R D ++I+ G +++I VPDGVV FF SY YL+ V
Sbjct: 1206 KRRDKTMIQQLGTAILNICSAVPDGVVVFFPSYGYLDEV 1244
>gi|289581439|ref|YP_003479905.1| DEAD/DEAH box helicase [Natrialba magadii ATCC 43099]
gi|289530992|gb|ADD05343.1| DEAD_2 domain protein [Natrialba magadii ATCC 43099]
Length = 729
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 631 QGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPV 689
+ ++D Q ++ L ++ L + S++ DG D R + S+ +R E+ V
Sbjct: 121 RAVVDAEQDKQQLERRQRELL---TESQQGDGGAADARSAVMDELESIEERLDDLEDQNV 177
Query: 690 CDFYEKF---DAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
CD+Y D L V + ++ E + LC Y L ++ I +VV +YH+
Sbjct: 178 CDYYRNNLTEDTDEFFGWLFEDVRTPDEIYEYAEQRELCGYELLKEGIEGVDLVVCNYHH 237
Query: 747 LLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
LLD I + L R + VFDEAHN+++ + + + RT E A+ +
Sbjct: 238 LLDSTIREQFFRWLGRDPEDVIAVFDEAHNVEDAAREHATRTCSERTFESALDEL 292
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Query: 2 SKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPVCDFYEKF---DAVGREAPLAPGVYSI 57
S++ DG D R + S+ +R E+ VCD+Y D L V +
Sbjct: 144 SQQGDGGAADARSAVMDELESIEERLDDLEDQNVCDYYRNNLTEDTDEFFGWLFEDVRTP 203
Query: 58 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFD 114
++ E + LC Y L ++ I +VV +YH+LLD I + L R + VFD
Sbjct: 204 DEIYEYAEQRELCGYELLKEGIEGVDLVVCNYHHLLDSTIREQFFRWLGRDPEDVIAVFD 263
Query: 115 EAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
EAHN+++ + + + RT E A+ +
Sbjct: 264 EAHNVEDAAREHATRTCSERTFESALDEL 292
>gi|149029745|gb|EDL84902.1| rCG63103 [Rattus norvegicus]
Length = 396
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 559 LVDIAC---VVPDGV----VCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
+V+ +C + PD + +C S LE ++ R+ ++ G++L ++ VVP G+
Sbjct: 143 VVEFSCGHVIPPDNILPLIICSGPSNQQLEFTYQRRELPQMMEETGRILCNLCNVVPGGM 202
Query: 612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
VCF SY YL V A W G++ L RK +F E + A
Sbjct: 203 VCFLPSYEYLRQVHAHWDKTGLLARLSVRKKIFQEPKRA 241
>gi|448283143|ref|ZP_21474422.1| DEAD/DEAH box helicase [Natrialba magadii ATCC 43099]
gi|445574851|gb|ELY29339.1| DEAD/DEAH box helicase [Natrialba magadii ATCC 43099]
Length = 722
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 631 QGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPV 689
+ ++D Q ++ L ++ L + S++ DG D R + S+ +R E+ V
Sbjct: 114 RAVVDAEQDKQQLERRQRELL---TESQQGDGGAADARSAVMDELESIEERLDDLEDQNV 170
Query: 690 CDFYEKF---DAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
CD+Y D L V + ++ E + LC Y L ++ I +VV +YH+
Sbjct: 171 CDYYRNNLTEDTDEFFGWLFEDVRTPDEIYEYAEQRELCGYELLKEGIEGVDLVVCNYHH 230
Query: 747 LLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
LLD I + L R + VFDEAHN+++ + + + RT E A+ +
Sbjct: 231 LLDSTIREQFFRWLGRDPEDVIAVFDEAHNVEDAAREHATRTCSERTFESALDEL 285
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Query: 2 SKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPVCDFYEKF---DAVGREAPLAPGVYSI 57
S++ DG D R + S+ +R E+ VCD+Y D L V +
Sbjct: 137 SQQGDGGAADARSAVMDELESIEERLDDLEDQNVCDYYRNNLTEDTDEFFGWLFEDVRTP 196
Query: 58 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFD 114
++ E + LC Y L ++ I +VV +YH+LLD I + L R + VFD
Sbjct: 197 DEIYEYAEQRELCGYELLKEGIEGVDLVVCNYHHLLDSTIREQFFRWLGRDPEDVIAVFD 256
Query: 115 EAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
EAHN+++ + + + RT E A+ +
Sbjct: 257 EAHNVEDAAREHATRTCSERTFESALDEL 285
>gi|384485133|gb|EIE77313.1| hypothetical protein RO3G_02017 [Rhizopus delemar RA 99-880]
Length = 667
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V+ I + +G+E+ CPY+ +R A++V Y+Y+LDP I V++ +L S+V+
Sbjct: 195 VWDIEDMISLGKEVRGCPYYTSRNLFESAEVVFCPYNYILDPVIRKVMNIDL-EGSIVIL 253
Query: 114 DEAHNIDNVCVDSLSVRINRRTI 136
DEAHN+++ + S ++ R +
Sbjct: 254 DEAHNMEDAARSAGSFELDDRAL 276
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V+ I + +G+E+ CPY+ +R A++V Y+Y+LDP I V++ +L S+V+
Sbjct: 195 VWDIEDMISLGKEVRGCPYYTSRNLFESAEVVFCPYNYILDPVIRKVMNIDL-EGSIVIL 253
Query: 769 DEAHNIDNVCVDSLSVRINRRTI 791
DEAHN+++ + S ++ R +
Sbjct: 254 DEAHNMEDAARSAGSFELDDRAL 276
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V V P+G YL+ V+ + + G+ + IA VP G++CF
Sbjct: 518 QVWVSCLPVGPNGT--------YLKGVYSNMESFQYQDDIGEAICQIAETVPFGILCFLP 569
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
SY L+ ++ W GI + ++ +KL+ E
Sbjct: 570 SYNALDKLMERWALTGIKERMESKKLILSE 599
>gi|154341304|ref|XP_001566605.1| putative helicase [Leishmania braziliensis MHOM/BR/75/M2904]
gi|134063928|emb|CAM40119.1| putative helicase [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 954
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 25/132 (18%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
+ + V FP++ YP Q +M + + L + LLE P+GTGKT LL +A++ A
Sbjct: 7 VSGITVSFPFD-PYPAQVEFMRSVVECLQHGFNGLLESPTGTGKTLCLLCSTLAWIAATS 65
Query: 488 LDVT-----------------KLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLV 530
D K++YCSRT ++ +VV EL R + + M V
Sbjct: 66 QDAIFRPTSGREQKGRGMHTHKVVYCSRTHAQLTQVVRELRR-----TSYAQRFTMA--V 118
Query: 531 LSSRKNLCIHSE 542
L SR+++C++ E
Sbjct: 119 LGSREHMCLNKE 130
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 35 CDFYEKFDAVGREAPLAPG---VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 91
C F+ + A L P V+ + L G G CPYF R A A +V Y+Y
Sbjct: 153 CRFFRGLQSAAAGAGLLPPECVVHDMEDLMREGSRSGFCPYFHERDAAKDADVVFLPYNY 212
Query: 92 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 126
+LDP + + EL R+ +++ DEAHN+ +V S
Sbjct: 213 ILDPLLQKQLPFEL-RNCILIVDEAHNLPSVLSSS 246
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 690 CDFYEKFDAVGREAPLAPG---VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
C F+ + A L P V+ + L G G CPYF R A A +V Y+Y
Sbjct: 153 CRFFRGLQSAAAGAGLLPPECVVHDMEDLMREGSRSGFCPYFHERDAAKDADVVFLPYNY 212
Query: 747 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 781
+LDP + + EL R+ +++ DEAHN+ +V S
Sbjct: 213 ILDPLLQKQLPFEL-RNCILIVDEAHNLPSVLSSS 246
>gi|444516793|gb|ELV11286.1| Fanconi anemia group J protein [Tupaia chinensis]
Length = 257
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
+ I +L +G++L CPY+ AR+ I A I+ Y+YLLD +I + L + VV+
Sbjct: 4 AWDIEELVNLGKKLKACPYYTARELIEDADIIFCPYNYLLDAQIRESMDINL-KEQVVIL 62
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 146
DEAHNI++ +S S + + A + +L
Sbjct: 63 DEAHNIEDCARESASYSVTEVQLRFARDELDSL 95
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
+ I +L +G++L CPY+ AR+ I A I+ Y+YLLD +I + L + VV+
Sbjct: 4 AWDIEELVNLGKKLKACPYYTARELIEDADIIFCPYNYLLDAQIRESMDINL-KEQVVIL 62
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 801
DEAHNI++ +S S + + A + +L
Sbjct: 63 DEAHNIEDCARESASYSVTEVQLRFARDELDSL 95
>gi|397772055|ref|YP_006539601.1| helicase c2 [Natrinema sp. J7-2]
gi|397681148|gb|AFO55525.1| helicase c2 [Natrinema sp. J7-2]
Length = 723
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 27/248 (10%)
Query: 631 QGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPV 689
+ ++D Q R+ L ++ L + S++ DG D R + ++ +R + E+ V
Sbjct: 121 RAVVDAEQDREQLERRQRELL---AESQDGDGAAADARSAVMDELETIEERLEDLEDQTV 177
Query: 690 CDFYEKF---DAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
CD+Y D L V + ++ E LC Y L ++ I +VV +YH+
Sbjct: 178 CDYYRNNLTQDTDEFFGWLFEDVRTPDEIYEYAERQELCGYELLKEGIEGVDLVVCNYHH 237
Query: 747 LLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEG 803
LLD I + L R + VFDEAHN+++ + + + RT E A+ + +
Sbjct: 238 LLDSTIREQFFRWLGRDPEDVIAVFDEAHNVEDAAREHATRTCSERTFESALEELADSDD 297
Query: 804 TLKEMKEADSAKLREEYAR-LVE--------GLRDAQSARETDVVLANPVLPD----EIL 850
E D+A + + R LVE G R+ DV +AN D E L
Sbjct: 298 PRAE----DAANVLSAFHRALVETYEDSFGFGEREGIGENWEDVSIANDDRKDDLTLEFL 353
Query: 851 QGKTDYGI 858
Q + GI
Sbjct: 354 QRYSGRGI 361
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 20/214 (9%)
Query: 2 SKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPVCDFYEKF---DAVGREAPLAPGVYSI 57
S++ DG D R + ++ +R + E+ VCD+Y D L V +
Sbjct: 144 SQDGDGAAADARSAVMDELETIEERLEDLEDQTVCDYYRNNLTQDTDEFFGWLFEDVRTP 203
Query: 58 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFD 114
++ E LC Y L ++ I +VV +YH+LLD I + L R + VFD
Sbjct: 204 DEIYEYAERQELCGYELLKEGIEGVDLVVCNYHHLLDSTIREQFFRWLGRDPEDVIAVFD 263
Query: 115 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYAR-LVE--- 170
EAHN+++ + + + RT E A+ + + E D+A + + R LVE
Sbjct: 264 EAHNVEDAAREHATRTCSERTFESALEELADSDDPRAE----DAANVLSAFHRALVETYE 319
Query: 171 -----GLRDAQSARETDVVLANPVLPDEILQEVV 199
G R+ DV +AN D++ E +
Sbjct: 320 DSFGFGEREGIGENWEDVSIANDDRKDDLTLEFL 353
>gi|366997252|ref|XP_003678388.1| hypothetical protein NCAS_0J00700 [Naumovozyma castellii CBS 4309]
gi|342304260|emb|CCC72049.1| hypothetical protein NCAS_0J00700 [Naumovozyma castellii CBS 4309]
Length = 832
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 559 LVDIAC--VVPD-GVVCFFTSYLYLESVFETRDDISVIRNY-GQLLVDIACVVPD--GVV 612
+ +C V+PD + F + E FE R+D +I Y Q + ++ VP G+V
Sbjct: 580 ITSFSCDHVIPDSNLNTFILNEPIWEFTFEKRNDTQLINKYLFQFFIKLSTSVPSKGGIV 639
Query: 613 CFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRS 655
FF SY YL+ V+ W G+ + L + +F E++D +D S
Sbjct: 640 VFFPSYQYLDHVITQWKSNGLFEKLNAIRSIFYESKDGVDPLS 682
Score = 48.1 bits (113), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 64 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
G LG+CP++ R +I A+++ Y YLL + ++ EL ++S+++ DEAHN+
Sbjct: 325 GETLGVCPFYAIRDSIPGAEVITLPYQYLLSETMRESLNLEL-KNSIIIIDEAHNL 379
Score = 48.1 bits (113), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 719 GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
G LG+CP++ R +I A+++ Y YLL + ++ EL ++S+++ DEAHN+
Sbjct: 325 GETLGVCPFYAIRDSIPGAEVITLPYQYLLSETMRESLNLEL-KNSIIIIDEAHNL 379
>gi|390345521|ref|XP_781875.3| PREDICTED: Fanconi anemia group J protein-like [Strongylocentrotus
purpuratus]
Length = 1704
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 11/119 (9%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
+ I L +G+ + CPYF +R A ++ Y+YL+DP I + +L + VV+
Sbjct: 405 AWDIEDLVALGKRVKACPYFSSRSLKDQADVIFCPYNYLIDPMIRQSMEIDL-KDQVVIL 463
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL 172
DEAHNI++ ++ S+ + ++ A E+ + + K REE+ R++ +
Sbjct: 464 DEAHNIEDSAREAASLTVTSEQLKDAT----------DELDKLLTFKFREEHTRVIHSV 512
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 11/119 (9%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
+ I L +G+ + CPYF +R A ++ Y+YL+DP I + +L + VV+
Sbjct: 405 AWDIEDLVALGKRVKACPYFSSRSLKDQADVIFCPYNYLIDPMIRQSMEIDL-KDQVVIL 463
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL 827
DEAHNI++ ++ S+ + ++ A E+ + + K REE+ R++ +
Sbjct: 464 DEAHNIEDSAREAASLTVTSEQLKDAT----------DELDKLLTFKFREEHTRVIHSV 512
Score = 47.0 bits (110), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 554 NYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVC 613
N Q+ V P+G +Y E+ F +DD+ G++++++ V+P GV+C
Sbjct: 702 NKSQVWVSTWAFGPNGH-SLNATYRNAET-FAFQDDL------GRVVLEVCRVIPYGVLC 753
Query: 614 FFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
F +SY + V+ W G+ D LQ K + E +
Sbjct: 754 FVSSYSMMNKVIERWKTTGLYDQLQSLKQVMCEARGG 790
>gi|346975762|gb|EGY19214.1| fanconi anemia group J protein [Verticillium dahliae VdLs.17]
Length = 838
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQG------I 633
E F+ R D +++ G ++++ VVPDG+V FF SY YL+ VVA+W I
Sbjct: 582 FEFSFQRRSDKAMVNQLGLAILNMCAVVPDGIVVFFPSYGYLDEVVAAWETTAAGESTPI 641
Query: 634 IDNLQKRKLLFIETQDA 650
+Q+RK +F E++ A
Sbjct: 642 WTRMQQRKAVFKESKGA 658
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I L +G+ L +CPY+ +R AI +I+ Y LL + +L ++V+ DEA
Sbjct: 303 IEDLFHLGKSLEVCPYYASRTAIAGTEIITLPYPLLLQKTAREALGIKL-EGNIVIVDEA 361
Query: 117 HNIDNVCVDSLSVRINRRTIEKA 139
HNI + + + I +++A
Sbjct: 362 HNIMDAVANVYASEIRLGELKRA 384
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I L +G+ L +CPY+ +R AI +I+ Y LL + +L ++V+ DEA
Sbjct: 303 IEDLFHLGKSLEVCPYYASRTAIAGTEIITLPYPLLLQKTAREALGIKL-EGNIVIVDEA 361
Query: 772 HNIDNVCVDSLSVRINRRTIEKA 794
HNI + + + I +++A
Sbjct: 362 HNIMDAVANVYASEIRLGELKRA 384
Score = 43.5 bits (101), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 536 NLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
N F+ R D +++ G ++++ VVPDG+V FF SY YL+ V
Sbjct: 579 NSTFEFSFQRRSDKAMVNQLGLAILNMCAVVPDGIVVFFPSYGYLDEV 626
>gi|449674800|ref|XP_002169756.2| PREDICTED: probable ATP-dependent RNA helicase DDX11-like [Hydra
magnipapillata]
Length = 827
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
+++R++ ++ G+LLV+I VVP G+VCFF SY Y E V W + + + + +K +
Sbjct: 740 YQSRNNFDLVDELGRLLVNICSVVPGGIVCFFPSYDYEEFVYKRWINTSLFNKIDSKKKV 799
Query: 644 FIETQDAL 651
F E + A+
Sbjct: 800 FREPKSAM 807
Score = 46.6 bits (109), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
+++R++ ++ G+LLV+I VVP G+VCFF SY Y E V++
Sbjct: 740 YQSRNNFDLVDELGRLLVNICSVVPGGIVCFFPSYDYEEFVYK 782
Score = 46.2 bits (108), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V I ++ ++G++L CPY+ R I A++VV Y LL V + + VV+
Sbjct: 505 VQDIEQIVKLGKDLNTCPYYGTRHTIPKAQLVVLPYQTLLHRGTRESVGINV-KDCVVII 563
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEK 138
DEAHN+ + SV I + I K
Sbjct: 564 DEAHNLIETINNIHSVEIRQNQIHK 588
Score = 46.2 bits (108), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V I ++ ++G++L CPY+ R I A++VV Y LL V + + VV+
Sbjct: 505 VQDIEQIVKLGKDLNTCPYYGTRHTIPKAQLVVLPYQTLLHRGTRESVGINV-KDCVVII 563
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEK 793
DEAHN+ + SV I + I K
Sbjct: 564 DEAHNLIETINNIHSVEIRQNQIHK 588
>gi|448683597|ref|ZP_21692314.1| helicase [Haloarcula japonica DSM 6131]
gi|445783736|gb|EMA34561.1| helicase [Haloarcula japonica DSM 6131]
Length = 725
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 14/117 (11%)
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHN 118
E + GLC Y L ++ + +VV +YH+LLDP I + R + VFDEAHN
Sbjct: 210 EYAHQQGLCGYELLKEGMDGVDLVVCNYHHLLDPTIREQFFHWIGRDPEDIIAVFDEAHN 269
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDA 175
+++ D RRT+ + TL+ L E+ D A+ + A ++E RDA
Sbjct: 270 VESAARDHA-----RRTLTE-----NTLDQALDELDGEDDART-DAAANVIETFRDA 315
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 14/117 (11%)
Query: 717 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHN 773
E + GLC Y L ++ + +VV +YH+LLDP I + R + VFDEAHN
Sbjct: 210 EYAHQQGLCGYELLKEGMDGVDLVVCNYHHLLDPTIREQFFHWIGRDPEDIIAVFDEAHN 269
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDA 830
+++ D RRT+ + TL+ L E+ D A+ + A ++E RDA
Sbjct: 270 VESAARDHA-----RRTLTE-----NTLDQALDELDGEDDART-DAAANVIETFRDA 315
>gi|448342513|ref|ZP_21531463.1| helicase c2 [Natrinema gari JCM 14663]
gi|445625528|gb|ELY78885.1| helicase c2 [Natrinema gari JCM 14663]
Length = 716
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 27/248 (10%)
Query: 631 QGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPV 689
+ ++D Q R+ L ++ L + S++ DG D R + ++ +R + E+ V
Sbjct: 114 RAVVDAEQDREQLERRQRELL---AESQDGDGAAADARSAVMDELETIEERLEDLEDQTV 170
Query: 690 CDFYEKF---DAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
CD+Y D L V + ++ E LC Y L ++ I +VV +YH+
Sbjct: 171 CDYYRNNLTQDTDEFFGWLFEDVRTPDEIYEYAERQELCGYELLKEGIEGVDLVVCNYHH 230
Query: 747 LLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEG 803
LLD I + L R + VFDEAHN+++ + + + RT E A+ + +
Sbjct: 231 LLDSTIREQFFRWLGRDPEDVIAVFDEAHNVEDAAREHATRTCSERTFESALEELADSDD 290
Query: 804 TLKEMKEADSAKLREEYAR-LVE--------GLRDAQSARETDVVLANPVLPD----EIL 850
E D+A + + R LVE G R+ DV +AN D E L
Sbjct: 291 PRAE----DAANVLSAFHRALVETYEDSFGFGEREGIGENWEDVSIANDDRKDDLTLEFL 346
Query: 851 QGKTDYGI 858
Q + GI
Sbjct: 347 QRYSGRGI 354
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 20/214 (9%)
Query: 2 SKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPVCDFYEKF---DAVGREAPLAPGVYSI 57
S++ DG D R + ++ +R + E+ VCD+Y D L V +
Sbjct: 137 SQDGDGAAADARSAVMDELETIEERLEDLEDQTVCDYYRNNLTQDTDEFFGWLFEDVRTP 196
Query: 58 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFD 114
++ E LC Y L ++ I +VV +YH+LLD I + L R + VFD
Sbjct: 197 DEIYEYAERQELCGYELLKEGIEGVDLVVCNYHHLLDSTIREQFFRWLGRDPEDVIAVFD 256
Query: 115 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYAR-LVE--- 170
EAHN+++ + + + RT E A+ + + E D+A + + R LVE
Sbjct: 257 EAHNVEDAAREHATRTCSERTFESALEELADSDDPRAE----DAANVLSAFHRALVETYE 312
Query: 171 -----GLRDAQSARETDVVLANPVLPDEILQEVV 199
G R+ DV +AN D++ E +
Sbjct: 313 DSFGFGEREGIGENWEDVSIANDDRKDDLTLEFL 346
>gi|389637597|ref|XP_003716432.1| DEAD_2 domain-containing protein [Magnaporthe oryzae 70-15]
gi|351642251|gb|EHA50113.1| DEAD_2 domain-containing protein [Magnaporthe oryzae 70-15]
Length = 921
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 25/116 (21%)
Query: 559 LVDIAC--VVPDGVVCFFT------------SYLYLESVFETRDDISVIRNYGQLLVDIA 604
+ ++C V+P +C +T S L+ E F+ R D ++I+ G +++I
Sbjct: 594 ITKLSCGHVIPSSNLCVWTLASMRPATPAGNSDLF-EFSFQKRRDKTMIQQLGTAILNIC 652
Query: 605 CVVPDGVVCFFTSYLYLESVVASWY----------DQGIIDNLQKRKLLFIETQDA 650
VPDGVV FF SY YL+ VVA+ + I D LQ RK +F ET+
Sbjct: 653 SAVPDGVVVFFPSYGYLDEVVAALQQKLAATGTAPNSSIWDKLQSRKAVFRETKGG 708
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 3/165 (1%)
Query: 10 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGL 69
++ RC L S + K +P D + R+A LA + I ++G+ L +
Sbjct: 275 INDRCTELQKSKAKSEGKRCPYVPSQDNLSETHQF-RDASLAT-IPDIEDAHKLGKSLQV 332
Query: 70 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 129
CPY+ R AI A+IV Y LL + + EL + SVVV DEAHNI + S
Sbjct: 333 CPYYATRTAIPGAEIVTLPYPLLLQKSARDALGIEL-QGSVVVVDEAHNIMDAIAGVHSA 391
Query: 130 RINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRD 174
I + + + + +A++ + + AR+++GL +
Sbjct: 392 EIRLEDLRRGREMLSIYAKRFGKKLKAENRIMVGQVARVIQGLSE 436
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 3/165 (1%)
Query: 665 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGL 724
++ RC L S + K +P D + R+A LA + I ++G+ L +
Sbjct: 275 INDRCTELQKSKAKSEGKRCPYVPSQDNLSETHQF-RDASLAT-IPDIEDAHKLGKSLQV 332
Query: 725 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 784
CPY+ R AI A+IV Y LL + + EL + SVVV DEAHNI + S
Sbjct: 333 CPYYATRTAIPGAEIVTLPYPLLLQKSARDALGIEL-QGSVVVVDEAHNIMDAIAGVHSA 391
Query: 785 RINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRD 829
I + + + + +A++ + + AR+++GL +
Sbjct: 392 EIRLEDLRRGREMLSIYAKRFGKKLKAENRIMVGQVARVIQGLSE 436
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 485 AHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFE 544
+HP L C +P V LA + N ++ F+
Sbjct: 588 SHPQHKITKLSCGHVIPSSNLCVWTLASMRPATPAGNSDL--------------FEFSFQ 633
Query: 545 TRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
R D ++I+ G +++I VPDGVV FF SY YL+ V
Sbjct: 634 KRRDKTMIQQLGTAILNICSAVPDGVVVFFPSYGYLDEV 672
>gi|159118615|ref|XP_001709526.1| TFIIH basal transcription factor complex helicase subunit [Giardia
lamblia ATCC 50803]
gi|157437643|gb|EDO81852.1| TFIIH basal transcription factor complex helicase subunit [Giardia
lamblia ATCC 50803]
Length = 1059
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 70 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 129
CPY+L R + A++V Y+Y+L K + R+S+++ DE HNI C D+ S
Sbjct: 268 CPYYLGRALVPQARVVTAPYNYILSSKNRTSELSSMLRNSILLVDEGHNIGQACCDTFSG 327
Query: 130 RINRRTIEKAVGNIQTLE 147
+ + KA IQ L+
Sbjct: 328 SVTTDALLKASEEIQYLQ 345
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 725 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSV 784
CPY+L R + A++V Y+Y+L K + R+S+++ DE HNI C D+ S
Sbjct: 268 CPYYLGRALVPQARVVTAPYNYILSSKNRTSELSSMLRNSILLVDEGHNIGQACCDTFSG 327
Query: 785 RINRRTIEKAVGNIQTLE 802
+ + KA IQ L+
Sbjct: 328 SVTTDALLKASEEIQYLQ 345
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 423 AMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
A L I + FP+E YP Q YM L AL+ K + LLE P+GTGKT SLL +AY
Sbjct: 2 AAMLKIKGVHFQFPFE-PYPSQIEYMSSLITALNKKENALLESPTGTGKTLSLLIPAIAY 60
>gi|443897877|dbj|GAC75216.1| helicase of the DEAD superfamily [Pseudozyma antarctica T-34]
Length = 1454
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 14/139 (10%)
Query: 35 CDFYEKFDAVGR-------EAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 87
C FD GR +A +A V I L ++GR+ CPYF AR + A++V
Sbjct: 302 CAALPSFDLAGRAQILEFRDAAMAQ-VGDIEDLVQLGRDTKTCPYFAARTSAKQAELVTL 360
Query: 88 SYHYLL--DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 145
Y+ LL D + A +S E VV+ DEAHN+ + + + SV I+ R I +A I
Sbjct: 361 PYNLLLQKDARQALGISLE---GCVVLIDEAHNLIDTILGTHSVAIDSRQIAQATRQIDA 417
Query: 146 -LEGTLKEMKEADSAKLRE 163
L+ +K ++ A LR+
Sbjct: 418 YLDRFALRLKGSNEANLRK 436
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 14/139 (10%)
Query: 690 CDFYEKFDAVGR-------EAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY 742
C FD GR +A +A V I L ++GR+ CPYF AR + A++V
Sbjct: 302 CAALPSFDLAGRAQILEFRDAAMAQ-VGDIEDLVQLGRDTKTCPYFAARTSAKQAELVTL 360
Query: 743 SYHYLL--DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 800
Y+ LL D + A +S E VV+ DEAHN+ + + + SV I+ R I +A I
Sbjct: 361 PYNLLLQKDARQALGISLE---GCVVLIDEAHNLIDTILGTHSVAIDSRQIAQATRQIDA 417
Query: 801 -LEGTLKEMKEADSAKLRE 818
L+ +K ++ A LR+
Sbjct: 418 YLDRFALRLKGSNEANLRK 436
Score = 47.0 bits (110), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 24/133 (18%)
Query: 558 LLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTS 617
L+V + P G L E F++R + +I G+ L+++ V P G+V F S
Sbjct: 640 LMVSVLGSSPKG--------LPFEFKFDSRANAELIDELGRTLINLCNVAPAGLVVFVPS 691
Query: 618 YLYLESVVASWYDQG---IIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTS 674
Y +L+ ++A W D + L +K +F E + ++ VDG T
Sbjct: 692 YAFLDRIMARWKDAASGELHKRLGAKKKIFSEPKTTME------------VDGVLQDYT- 738
Query: 675 SSVRDRHKAGENI 687
+++RD AG I
Sbjct: 739 AAIRDAGSAGGAI 751
>gi|48477956|ref|YP_023662.1| DNA repair helicase [Picrophilus torridus DSM 9790]
gi|48430604|gb|AAT43469.1| DNA repair helicase [Picrophilus torridus DSM 9790]
Length = 605
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIA-NVVSKELARSSVVVFDEAHNI 119
K + LG CPY+ R + + I+V +Y+YLL+P I E +VFDEAHNI
Sbjct: 163 KREKKSLGFCPYYSVRLSALSHNIIVMTYNYLLNPGIRYRTFGIENFNDYCIVFDEAHNI 222
Query: 120 DNVCVDSLSVRINRRTIEKAV 140
D+ V++L + +T+E+A+
Sbjct: 223 DDF-VENLGRSLRPKTVERAI 242
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIA-NVVSKELARSSVVVFDEAHNI 774
K + LG CPY+ R + + I+V +Y+YLL+P I E +VFDEAHNI
Sbjct: 163 KREKKSLGFCPYYSVRLSALSHNIIVMTYNYLLNPGIRYRTFGIENFNDYCIVFDEAHNI 222
Query: 775 DNVCVDSLSVRINRRTIEKAV 795
D+ V++L + +T+E+A+
Sbjct: 223 DDF-VENLGRSLRPKTVERAI 242
>gi|406865719|gb|EKD18760.1| putative ATP-dependent RNA helicase chl1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 894
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW-----YDQ-GIIDN 636
F+ R + +I + G+ L++I VVPDGVV FF SY YL S+V+ W DQ ++
Sbjct: 633 TFKNRGNNDMIDDLGRALLNICTVVPDGVVVFFPSYSYLSSIVSRWEVIPGQDQKSLLQR 692
Query: 637 LQKRKLLFIETQD 649
L+ +K+LF E+++
Sbjct: 693 LEGKKVLFKESKE 705
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 14/135 (10%)
Query: 10 VDGRCHSLTSSSVRDRHKA-----GENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMG 64
V+ RC L +S HK EN + + + R+ LA + I + ++G
Sbjct: 270 VNERCAELQQTSTPKEHKCVFLPNKENQTLVNTF-------RDRSLAT-IRDIEDMGDLG 321
Query: 65 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 124
+++G+CPY+ +R AI A+IV Y LL + L + VV+ DEAHN+ +
Sbjct: 322 KQIGICPYYASRSAIRPAEIVTLPYPLLLQKSAREALGISL-KGHVVIIDEAHNLMDAIS 380
Query: 125 DSLSVRINRRTIEKA 139
V ++ R +++
Sbjct: 381 GIHGVEVSLRQLKRG 395
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 14/135 (10%)
Query: 665 VDGRCHSLTSSSVRDRHKA-----GENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMG 719
V+ RC L +S HK EN + + + R+ LA + I + ++G
Sbjct: 270 VNERCAELQQTSTPKEHKCVFLPNKENQTLVNTF-------RDRSLAT-IRDIEDMGDLG 321
Query: 720 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 779
+++G+CPY+ +R AI A+IV Y LL + L + VV+ DEAHN+ +
Sbjct: 322 KQIGICPYYASRSAIRPAEIVTLPYPLLLQKSAREALGISL-KGHVVIIDEAHNLMDAIS 380
Query: 780 DSLSVRINRRTIEKA 794
V ++ R +++
Sbjct: 381 GIHGVEVSLRQLKRG 395
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
F+ R + +I + G+ L++I VVPDGVV FF SY YL S+
Sbjct: 634 FKNRGNNDMIDDLGRALLNICTVVPDGVVVFFPSYSYLSSI 674
Score = 40.8 bits (94), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 491 TKLLYCSRTVPEIEKVVEELAR------LFDYYIKHNEEINMTGLVLSSRKNLCIHSEFE 544
TK+ YCSRT ++ + + EL R + D IK ++ ++ L L SRKNLCI+ +
Sbjct: 203 TKIFYCSRTHSQLTQFINELRRVNFPPSIKDENIKPSDIEDLKHLTLGSRKNLCINPKVN 262
Query: 545 TRDDISVI 552
+ ++ +
Sbjct: 263 KLNSLTAV 270
>gi|340379359|ref|XP_003388194.1| PREDICTED: Fanconi anemia group J protein homolog [Amphimedon
queenslandica]
Length = 235
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 35 CDFYEKFDA-VGREAPLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 89
C FY K +G + L + I L +GR++ CPY+ +R A+I+ Y
Sbjct: 38 CAFYHKVQQKLGSQYKLRENGITTAWDIEDLVTLGRKIKTCPYYSSRALFEEAEIIFCPY 97
Query: 90 HYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEK 138
+YL+DP I + L S+++FDEAHN+++ ++ S+ +N +++
Sbjct: 98 NYLIDPLIREQMMIRL-EDSILIFDEAHNMEDAAREAASLTVNSNQLKE 145
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 690 CDFYEKFDA-VGREAPLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 744
C FY K +G + L + I L +GR++ CPY+ +R A+I+ Y
Sbjct: 38 CAFYHKVQQKLGSQYKLRENGITTAWDIEDLVTLGRKIKTCPYYSSRALFEEAEIIFCPY 97
Query: 745 HYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEK 793
+YL+DP I + L S+++FDEAHN+++ ++ S+ +N +++
Sbjct: 98 NYLIDPLIREQMMIRL-EDSILIFDEAHNMEDAAREAASLTVNSNQLKE 145
>gi|301111400|ref|XP_002904779.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262095109|gb|EEY53161.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 1058
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 14/146 (9%)
Query: 4 ERDGKIVDGRCHSLTSSSVRDR---HKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
E+ K+ R + S+ +DR HK G D Y K R A + I +L
Sbjct: 140 EKVSKLRGTRQNLACRSTCKDRRCMHKLG-----FDSYAK-----RSKKQAQPIMDIEEL 189
Query: 61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
+E +CP+FL R + A+IV Y+YL+DP + + +S+++FDEAHN++
Sbjct: 190 VTTMKEKIICPFFLTRNMLPEAEIVFVPYNYLIDPMARRSIGISI-ENSILIFDEAHNVE 248
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTL 146
++ ++ S ++ I + + T
Sbjct: 249 SIASEAASYALSSNDISGCISEVDTF 274
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 14/146 (9%)
Query: 659 ERDGKIVDGRCHSLTSSSVRDR---HKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
E+ K+ R + S+ +DR HK G D Y K R A + I +L
Sbjct: 140 EKVSKLRGTRQNLACRSTCKDRRCMHKLG-----FDSYAK-----RSKKQAQPIMDIEEL 189
Query: 716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
+E +CP+FL R + A+IV Y+YL+DP + + +S+++FDEAHN++
Sbjct: 190 VTTMKEKIICPFFLTRNMLPEAEIVFVPYNYLIDPMARRSIGISI-ENSILIFDEAHNVE 248
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTL 801
++ ++ S ++ I + + T
Sbjct: 249 SIASEAASYALSSNDISGCISEVDTF 274
Score = 46.2 bits (108), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 50/170 (29%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY--- 482
L I +PV FP+ Y Q YM ++ AL +K + +LE P+GTGKT LL +A+
Sbjct: 4 LEICGIPVEFPFP-PYDSQLIYMEKVLLALTSKQNAILESPTGTGKTLCLLCATLAWRRE 62
Query: 483 ----MNAHPL------------------------DVTKLLYCSRTVPEIEKVVEELARLF 514
+ + L + +++Y SRT ++++VV+EL
Sbjct: 63 LQKKLGTNTLAPAKRPGPSLAYEGYGSDGESDAPQLPRIIYSSRTHSQLKQVVQEL---- 118
Query: 515 DYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIAC 564
N VL SR++LC++ + +S +R Q ++AC
Sbjct: 119 -----KNTSYRPNVAVLGSREHLCVN------EKVSKLRGTRQ---NLAC 154
>gi|429854790|gb|ELA29777.1| ATP-dependent RNA helicase chl1 [Colletotrichum gloeosporioides
Nara gc5]
Length = 858
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 19/111 (17%)
Query: 559 LVDIAC--VVPDGVVCFFT-----------SYLYLESVFETRDDISVIRNYGQLLVDIAC 605
L ++C V+P +C +T E F+ R D +++ G +++I
Sbjct: 561 LTTLSCGHVIPPSNLCVWTLAGTKPGPNRDVSSTFEFSFQRRSDKTMVSQLGLAILNICN 620
Query: 606 VVPDGVVCFFTSYLYLESVVASW------YDQGIIDNLQKRKLLFIETQDA 650
VVPDGVV FF SY YL+ VVA W + I D +++RK F ET+
Sbjct: 621 VVPDGVVVFFPSYGYLDEVVAVWETKSPGESKSIWDRMRERKEAFKETRGG 671
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I L +G++L +CPY+ +R AI A+I+ Y LL + + +L +VV+ DEA
Sbjct: 290 IEDLYHLGKKLEVCPYYASRAAIAGAEIITLPYPLLLQKNARDALGIKL-EGNVVIVDEA 348
Query: 117 HNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQ 176
HNI + + + I + +A + + + ++ + + R++EGL +
Sbjct: 349 HNIMDAVANVYASEIKLTELRRARQMLGVYVKRFGKKLKGENRVMVGQVGRVIEGLTEWM 408
Query: 177 SARET 181
S T
Sbjct: 409 SGAMT 413
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I L +G++L +CPY+ +R AI A+I+ Y LL + + +L +VV+ DEA
Sbjct: 290 IEDLYHLGKKLEVCPYYASRAAIAGAEIITLPYPLLLQKNARDALGIKL-EGNVVIVDEA 348
Query: 772 HNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQ 831
HNI + + + I + +A + + + ++ + + R++EGL +
Sbjct: 349 HNIMDAVANVYASEIKLTELRRARQMLGVYVKRFGKKLKGENRVMVGQVGRVIEGLTEWM 408
Query: 832 SARET 836
S T
Sbjct: 409 SGAMT 413
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLE---SVFETR 587
F+ R D +++ G +++I VVPDGVV FF SY YL+ +V+ET+
Sbjct: 599 FQRRSDKTMVSQLGLAILNICNVVPDGVVVFFPSYGYLDEVVAVWETK 646
>gi|398019061|ref|XP_003862695.1| helicase, putative [Leishmania donovani]
gi|322500925|emb|CBZ36002.1| helicase, putative [Leishmania donovani]
Length = 953
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 25/132 (18%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA-- 485
+ + V FP+E YP Q +M + K L + LLE P+GTGKT LL + ++ A
Sbjct: 7 VSGITVSFPFE-PYPAQVEFMRSVVKCLQHGFNGLLESPTGTGKTLCLLCSTLGWLAATS 65
Query: 486 ------HPLDVT---------KLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLV 530
H D K++YCSRT ++ +VV EL R + + M V
Sbjct: 66 QGAVLRHTSDQDQKGRGKYNHKVVYCSRTHAQLTQVVRELKR-----TSYAQCFTMA--V 118
Query: 531 LSSRKNLCIHSE 542
L SR+++C++ E
Sbjct: 119 LGSREHMCLNKE 130
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 35 CDFYEKF-DAVGREAPLAP--GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 91
C F+ A + L+P V+ + L G G CPYF R A A +V+ Y+Y
Sbjct: 153 CRFFRGLLSAAAGASLLSPECAVHDMEDLMREGSRSGFCPYFHERDAAKDADVVLMPYNY 212
Query: 92 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 126
+LDP + + ELA +++ DEAHN+ +V S
Sbjct: 213 VLDPSLHKQLPFELA-DCILIVDEAHNLPSVLSSS 246
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 690 CDFYEKF-DAVGREAPLAP--GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
C F+ A + L+P V+ + L G G CPYF R A A +V+ Y+Y
Sbjct: 153 CRFFRGLLSAAAGASLLSPECAVHDMEDLMREGSRSGFCPYFHERDAAKDADVVLMPYNY 212
Query: 747 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 781
+LDP + + ELA +++ DEAHN+ +V S
Sbjct: 213 VLDPSLHKQLPFELA-DCILIVDEAHNLPSVLSSS 246
>gi|448367191|ref|ZP_21555039.1| DEAD/DEAH box helicase [Natrialba aegyptia DSM 13077]
gi|445653675|gb|ELZ06544.1| DEAD/DEAH box helicase [Natrialba aegyptia DSM 13077]
Length = 733
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 631 QGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPV 689
+ ++D Q ++ L ++ L+ S++ DG D R + S+ DR E+ V
Sbjct: 114 RAVVDAEQDKQQLERRQRELLEE---SQDGDGGAADARSAVMDELESIEDRLDDLEDQNV 170
Query: 690 CDFYEKFDAVGRE---APLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
C++Y E L V + ++ + + LC Y L ++ I +VV +YH+
Sbjct: 171 CEYYRNNLTEDTEEFFGWLFEDVRTPDEIYDYAEQRQLCGYELLKEGIEGVDLVVCNYHH 230
Query: 747 LLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
LLD I + L R + VFDEAHN+++ + + + RT E A+ +
Sbjct: 231 LLDATIREQFFRWLGRDPDDVIAVFDEAHNVEDAAREHATRTCSERTFESALDEL 285
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Query: 2 SKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPVCDFYEKFDAVGRE---APLAPGVYSI 57
S++ DG D R + S+ DR E+ VC++Y E L V +
Sbjct: 137 SQDGDGGAADARSAVMDELESIEDRLDDLEDQNVCEYYRNNLTEDTEEFFGWLFEDVRTP 196
Query: 58 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFD 114
++ + + LC Y L ++ I +VV +YH+LLD I + L R + VFD
Sbjct: 197 DEIYDYAEQRQLCGYELLKEGIEGVDLVVCNYHHLLDATIREQFFRWLGRDPDDVIAVFD 256
Query: 115 EAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
EAHN+++ + + + RT E A+ +
Sbjct: 257 EAHNVEDAAREHATRTCSERTFESALDEL 285
>gi|146093363|ref|XP_001466793.1| putative helicase [Leishmania infantum JPCM5]
gi|134071156|emb|CAM69841.1| putative helicase [Leishmania infantum JPCM5]
Length = 953
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 25/132 (18%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA-- 485
+ + V FP+E YP Q +M + K L + LLE P+GTGKT LL + ++ A
Sbjct: 7 VSGITVSFPFE-PYPAQVEFMRSVVKCLQHGFNGLLESPTGTGKTLCLLCSTLGWLAATS 65
Query: 486 ------HPLDVT---------KLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLV 530
H D K++YCSRT ++ +VV EL R + + M V
Sbjct: 66 QGAVLRHTSDQDQKGRGKYNHKVVYCSRTHAQLTQVVRELKR-----TSYAQCFTMA--V 118
Query: 531 LSSRKNLCIHSE 542
L SR+++C++ E
Sbjct: 119 LGSREHMCLNKE 130
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 35 CDFYEKF-DAVGREAPLAP--GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 91
C F+ A + L+P V+ + L G G CPYF R A A +V+ Y+Y
Sbjct: 153 CRFFRGLLSAAAGASLLSPECAVHDMEDLMREGSRSGFCPYFHERDAAKDADVVLMPYNY 212
Query: 92 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 126
+LDP + + ELA +++ DEAHN+ +V S
Sbjct: 213 VLDPSLHKQLPFELA-DCILIVDEAHNLPSVLSSS 246
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 690 CDFYEKF-DAVGREAPLAP--GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
C F+ A + L+P V+ + L G G CPYF R A A +V+ Y+Y
Sbjct: 153 CRFFRGLLSAAAGASLLSPECAVHDMEDLMREGSRSGFCPYFHERDAAKDADVVLMPYNY 212
Query: 747 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 781
+LDP + + ELA +++ DEAHN+ +V S
Sbjct: 213 VLDPSLHKQLPFELA-DCILIVDEAHNLPSVLSSS 246
>gi|448351251|ref|ZP_21540060.1| DEAD/DEAH box helicase [Natrialba taiwanensis DSM 12281]
gi|445634935|gb|ELY88109.1| DEAD/DEAH box helicase [Natrialba taiwanensis DSM 12281]
Length = 733
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 631 QGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPV 689
+ ++D Q ++ L ++ L+ S++ DG D R + S+ DR E+ V
Sbjct: 114 RAVVDAEQDKQQLERRQRELLEE---SQDGDGGAADARSAVMDELESIEDRLDDLEDQNV 170
Query: 690 CDFYEKFDAVGRE---APLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
C++Y E L V + ++ + + LC Y L ++ I +VV +YH+
Sbjct: 171 CEYYRNNLTEDTEEFFGWLFEDVRTPDEIYDYAEQRQLCGYELLKEGIEGVDLVVCNYHH 230
Query: 747 LLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
LLD I + L R + VFDEAHN+++ + + + RT E A+ +
Sbjct: 231 LLDATIREQFFRWLGRDPDDVIAVFDEAHNVEDAAREHATRTCSERTFESALDEL 285
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Query: 2 SKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPVCDFYEKFDAVGRE---APLAPGVYSI 57
S++ DG D R + S+ DR E+ VC++Y E L V +
Sbjct: 137 SQDGDGGAADARSAVMDELESIEDRLDDLEDQNVCEYYRNNLTEDTEEFFGWLFEDVRTP 196
Query: 58 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFD 114
++ + + LC Y L ++ I +VV +YH+LLD I + L R + VFD
Sbjct: 197 DEIYDYAEQRQLCGYELLKEGIEGVDLVVCNYHHLLDATIREQFFRWLGRDPDDVIAVFD 256
Query: 115 EAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
EAHN+++ + + + RT E A+ +
Sbjct: 257 EAHNVEDAAREHATRTCSERTFESALDEL 285
>gi|448638563|ref|ZP_21676413.1| helicase [Haloarcula sinaiiensis ATCC 33800]
gi|445763342|gb|EMA14541.1| helicase [Haloarcula sinaiiensis ATCC 33800]
Length = 725
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 111/281 (39%), Gaps = 44/281 (15%)
Query: 647 TQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLA 706
+ +A+++R+ E + D R T S D + + +FY + L
Sbjct: 149 SSEAMEARNAVVEELRDLQDEREEIETERSTCDHYYRNLTVDTSEFY---------SWLF 199
Query: 707 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS-- 764
V + + E + GLC Y L ++ + +VV +YH+LLDP I + R
Sbjct: 200 DDVRTPDDVYEYAHQQGLCGYELLKEGMDGVDLVVCNYHHLLDPTIREQFFHWIGRDPED 259
Query: 765 -VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARL 823
+ VFDEAHN+++ D RRT+ + TL+ L E+ + A+ A +
Sbjct: 260 IIAVFDEAHNVESAARDHA-----RRTLTE-----NTLDQALDELDNEEDARTNAA-ANV 308
Query: 824 VEGLRDAQ----------SARET------DVVLANPVLPDEI----LQGKTDYGIMIFAD 863
+E RDA RE D+ +AN D++ LQG T G D
Sbjct: 309 IETFRDALVEAYKDSFGFGGREAVDEHWDDITIANDNRKDDLTLAFLQGYTGPGFHEELD 368
Query: 864 KRFARS-DKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWL 903
+ D ++ K +E D T +A WL
Sbjct: 369 RALELGRDLDARYQKAFKEGELDTRKECQTLQAAGFISDWL 409
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 88/211 (41%), Gaps = 33/211 (15%)
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHN 118
E + GLC Y L ++ + +VV +YH+LLDP I + R + VFDEAHN
Sbjct: 210 EYAHQQGLCGYELLKEGMDGVDLVVCNYHHLLDPTIREQFFHWIGRDPEDIIAVFDEAHN 269
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQ-- 176
+++ D RRT+ + TL+ L E+ + A+ A ++E RDA
Sbjct: 270 VESAARDHA-----RRTLTE-----NTLDQALDELDNEEDARTNAA-ANVIETFRDALVE 318
Query: 177 --------SARET------DVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKT 222
RE D+ +AN D++ + G T F L R +E +
Sbjct: 319 AYKDSFGFGGREAVDEHWDDITIANDNRKDDLTLAFLQGY--TGPGFHEELDRALELGRD 376
Query: 223 -RLRVQQVVQESPATFLKDISSKPAPSMISE 252
R Q+ +E K+ + A IS+
Sbjct: 377 LDARYQKAFKEGELDTRKECQTLQAAGFISD 407
>gi|389852278|ref|YP_006354512.1| DNA repair helicase rad3 [Pyrococcus sp. ST04]
gi|388249584|gb|AFK22437.1| DNA repair helicase rad3 [Pyrococcus sp. ST04]
Length = 639
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 64/112 (57%), Gaps = 10/112 (8%)
Query: 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKL 493
+FPY+ + P Q ++ +++++ ++E P+G GKT S+L+ ++ Y + K+
Sbjct: 4 YFPYKSLRPNQKEFIELVRESVKKGESLIVEAPTGFGKTISVLAGVLPYAISFGY---KV 60
Query: 494 LYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFET 545
+Y +RT ++++V+EEL + ++G+ SRK+LC+HS +T
Sbjct: 61 IYLARTHKQMDRVIEELKAI-------RSVARVSGVEFRSRKDLCLHSYIQT 105
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA---RSSVVVFDEAHN 118
E + L LCPY + R+ A ++V SY Y+++P I L +++FDEAHN
Sbjct: 158 EYSQLLELCPYEITRKVGEKANVIVASYLYMINPWIRQAFMDSLGVDYSDLIIIFDEAHN 217
Query: 119 IDNVCVDSLSVRINRRTIEKAV 140
+ + + +LS R++ R+IE+A+
Sbjct: 218 VPDQAISALSDRLSVRSIERAI 239
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 717 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA---RSSVVVFDEAHN 773
E + L LCPY + R+ A ++V SY Y+++P I L +++FDEAHN
Sbjct: 158 EYSQLLELCPYEITRKVGEKANVIVASYLYMINPWIRQAFMDSLGVDYSDLIIIFDEAHN 217
Query: 774 IDNVCVDSLSVRINRRTIEKAV 795
+ + + +LS R++ R+IE+A+
Sbjct: 218 VPDQAISALSDRLSVRSIERAI 239
>gi|395324700|gb|EJF57135.1| DNA repair helicase [Dichomitus squalens LYAD-421 SS1]
Length = 879
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
F+ R D S+I GQ+L++ VVP G+V F SY +L + W G+++ L +K +
Sbjct: 646 FQQRGDDSLIAELGQILLNFTNVVPGGMVVFVPSYGFLNVITERWKASGMLEKLSAKKKV 705
Query: 644 FIETQDALDSRSVSKERDGKIVD 666
F E Q++ +V ++ +I D
Sbjct: 706 FSEPQESKQVEAVLRDYAAEIKD 728
Score = 39.7 bits (91), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 20/205 (9%)
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I L ++G+ CPYF +R+AI A++V+ Y+ LL + +L VV+ DEA
Sbjct: 326 IEDLYQIGQAADTCPYFGSRRAIPKAQLVLLPYNLLLQKTAREALGIDLT-DQVVIIDEA 384
Query: 772 HNIDNVCVDSLSVRINRRTIEKA-------VGNIQTLEGTLKEMKEADSAKLREEYARLV 824
HN+ + + + R+ RT+ A + + T+ + + E ++
Sbjct: 385 HNLTSTLLSLSATRLPLRTLSAARHQLSIYLSRFRNRLSTVHALHLKRLTNVLEGLSKYA 444
Query: 825 EGLRDAQSARETDVVLANPVLPD-EILQ--------GKTDYGIMIFADKRFARSDKRSKL 875
E R+AQ+ D + P+ E++ G+ G+ + +++ R SK+
Sbjct: 445 EDWREAQAKPAEDGKVKGRAGPEVEVITSGELMTRLGRKAEGVNLLEIEKYLRE---SKI 501
Query: 876 PKWIQEYLTDNLTNLSTEEAVQLSK 900
+ I Y L + ++ V+L+K
Sbjct: 502 ARKISGYSVKELEKAAGQDTVKLAK 526
>gi|356547406|ref|XP_003542103.1| PREDICTED: regulator of telomere elongation helicase 1-like
[Glycine max]
Length = 1001
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 35 CDFYEKFDAVGREAP-LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
C+ ++K ++ P L I L +GR G CPY+L+++ IV Y+YL+
Sbjct: 162 CNHFKKVPEYMKDNPQLGEEPVDIEDLVNIGRRFGPCPYYLSKELHKFVDIVFAPYNYLI 221
Query: 94 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 128
D + + +S+++FDEAHN++++C D+ S
Sbjct: 222 DRGYRKSLQLSWS-NSILIFDEAHNLESICADAAS 255
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 690 CDFYEKFDAVGREAP-LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
C+ ++K ++ P L I L +GR G CPY+L+++ IV Y+YL+
Sbjct: 162 CNHFKKVPEYMKDNPQLGEEPVDIEDLVNIGRRFGPCPYYLSKELHKFVDIVFAPYNYLI 221
Query: 749 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 783
D + + +S+++FDEAHN++++C D+ S
Sbjct: 222 DRGYRKSLQLSWS-NSILIFDEAHNLESICADAAS 255
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 64/142 (45%), Gaps = 37/142 (26%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY----- 482
I + V FPYE Y Q YM ++ ++L K + LLE P+GTGKT LL +A+
Sbjct: 6 IRGIDVDFPYE-AYESQLVYMDKVIQSLQEKCNALLESPTGTGKTLCLLCATLAWRKSLG 64
Query: 483 -------MNAHPLDVTK---------------LLYCSRTVPEIEKVVEELARLFDYYIKH 520
M A K ++Y SRT +I +V++EL R Y K
Sbjct: 65 SFTTGVSMQADDKSEGKNDVSSSQSESSRFSTIVYASRTHSQIRQVIQELKRT-SYRPKM 123
Query: 521 NEEINMTGLVLSSRKNLCIHSE 542
+VL SR+ LCIH E
Sbjct: 124 --------VVLGSREQLCIHDE 137
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 569 GVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW 628
GV+ S S + TRD + G +V++A +VPDG++ FF SY L+ ++A W
Sbjct: 476 GVLPVGPSGRTFNSSYRTRDSPEYKQELGNAIVNLARIVPDGLLVFFPSYYLLDQIIACW 535
Query: 629 YDQG-----IIDNLQKRKLLFIETQDA 650
I D + K K IE +D+
Sbjct: 536 KSSNENSTSIWDRICKHKKPVIEPRDS 562
Score = 40.0 bits (92), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN----MTGLVLSSRKNLCIHSEFET 545
V ++ S T+ +E +EL F +++ I G++ +S + T
Sbjct: 434 VRSIILTSGTLSPMESFAQELKLDFPIRLENPHVITANQIWAGVLPVGPSGRTFNSSYRT 493
Query: 546 RDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
RD + G +V++A +VPDG++ FF SY L+ +
Sbjct: 494 RDSPEYKQELGNAIVNLARIVPDGLLVFFPSYYLLDQI 531
>gi|47224934|emb|CAG06504.1| unnamed protein product [Tetraodon nigroviridis]
Length = 862
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 14/112 (12%)
Query: 35 CDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 89
C +Y +G + L + I L +G+ L C YF AR+ ++ A IV+ Y
Sbjct: 297 CHYYHGVQKMGEQYQLQRVHGLCEAWDIEDLVSLGKRLRSCSYFAARELMMDADIVLCPY 356
Query: 90 HYLLDPKIANVVSKELA---------RSSVVVFDEAHNIDNVCVDSLSVRIN 132
+YLLDP I VS E ++V DEAHNI++ +S S +N
Sbjct: 357 NYLLDPLIRESVSLEEQLEEMMDINLSGQILVLDEAHNIEDCARESASFTLN 408
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 14/112 (12%)
Query: 690 CDFYEKFDAVGREAPLAP-----GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 744
C +Y +G + L + I L +G+ L C YF AR+ ++ A IV+ Y
Sbjct: 297 CHYYHGVQKMGEQYQLQRVHGLCEAWDIEDLVSLGKRLRSCSYFAARELMMDADIVLCPY 356
Query: 745 HYLLDPKIANVVSKELA---------RSSVVVFDEAHNIDNVCVDSLSVRIN 787
+YLLDP I VS E ++V DEAHNI++ +S S +N
Sbjct: 357 NYLLDPLIRESVSLEEQLEEMMDINLSGQILVLDEAHNIEDCARESASFTLN 408
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAH 486
I + + FP + YP Q A M + + L+A HCLLE P+G+GK+ +LL + + A
Sbjct: 10 IGGVKIHFPCK-AYPSQLAMMNSIIRGLNAGNHCLLESPTGSGKSLALLCSALGWQRAQ 67
>gi|320165089|gb|EFW41988.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 950
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 575 TSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGII 634
T + + F R D V+ G+ L DI VP+GVVCFF SY Y+ V+ W ++
Sbjct: 702 TGEVKFDFSFRFRHDTRVMDELGRALCDIVAWVPEGVVCFFQSYDYMAKVLDRWRQTEVL 761
Query: 635 DNLQKRKLLFIETQDALDSRSVSKE 659
+Q +K +F E + A + SV +E
Sbjct: 762 QQVQLKKRVFQEPRVAGNVDSVLRE 786
Score = 46.2 bits (108), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
I +L G+++G C Y+ +R+AI A +V Y LL + L+ + VV+ DEA
Sbjct: 328 IEELVNRGKKMGACAYYASRRAIRAAHLVALPYQMLLHHSTREALGINLS-NQVVIVDEA 386
Query: 117 HNIDNVCVDSLSVRINRRTIEKAVGNIQ 144
HN+ D SV I I A ++
Sbjct: 387 HNVMETLNDIYSVTITLAVIRAAQSQLE 414
Score = 46.2 bits (108), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
I +L G+++G C Y+ +R+AI A +V Y LL + L+ + VV+ DEA
Sbjct: 328 IEELVNRGKKMGACAYYASRRAIRAAHLVALPYQMLLHHSTREALGINLS-NQVVIVDEA 386
Query: 772 HNIDNVCVDSLSVRINRRTIEKAVGNIQ 799
HN+ D SV I I A ++
Sbjct: 387 HNVMETLNDIYSVTITLAVIRAAQSQLE 414
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
F R D V+ G+ L DI VP+GVVCFF SY Y+ V +
Sbjct: 711 FRFRHDTRVMDELGRALCDIVAWVPEGVVCFFQSYDYMAKVLD 753
>gi|342878343|gb|EGU79689.1| hypothetical protein FOXB_09802 [Fusarium oxysporum Fo5176]
Length = 864
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 559 LVDIAC--VVPDGVVCFFT------SYLYLESVFETRDDISVIRNYGQLLVDIACVVPDG 610
+ ++C V+P +C +T E F+ R D +I G ++++ +VPDG
Sbjct: 582 ITTLSCGHVIPPENLCVWTLASSRPGAPPFEFSFQKRGDTEMITQLGLAILNLCSLVPDG 641
Query: 611 VVCFFTSYLYLESVVASWYD-----QGIIDNLQKRKLLFIETQDA 650
VV FF SY YL+ VV W Q D L RK LF E++ A
Sbjct: 642 VVIFFPSYGYLDEVVTVWQKSQGNAQPTWDRLASRKALFKESRGA 686
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 16/125 (12%)
Query: 655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVG-----REAPLAPGV 709
+VS+ + ++ RC L + K+G+ C F K D + R++ LA +
Sbjct: 263 TVSRLGSVQAINDRCSEL------QQPKSGQK---CPFVPKEDLLSQTHQFRDSALAT-L 312
Query: 710 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 769
I L ++G+ L +CPY+ +R A+ A+I+ Y LL + + +L SVV+ D
Sbjct: 313 PDIEDLHQLGKSLSVCPYYASRTALPGAEIITLPYPLLLQKSARDALGVKL-EGSVVIID 371
Query: 770 EAHNI 774
EAHNI
Sbjct: 372 EAHNI 376
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 16/117 (13%)
Query: 8 KIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVG-----REAPLAPGVYSITKLKE 62
+ ++ RC L + K+G+ C F K D + R++ LA + I L +
Sbjct: 271 QAINDRCSEL------QQPKSGQK---CPFVPKEDLLSQTHQFRDSALAT-LPDIEDLHQ 320
Query: 63 MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
+G+ L +CPY+ +R A+ A+I+ Y LL + + +L SVV+ DEAHNI
Sbjct: 321 LGKSLSVCPYYASRTALPGAEIITLPYPLLLQKSARDALGVKL-EGSVVIIDEAHNI 376
Score = 42.7 bits (99), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
F+ R D +I G ++++ +VPDGVV FF SY YL+ V
Sbjct: 615 FQKRGDTEMITQLGLAILNLCSLVPDGVVIFFPSYGYLDEV 655
>gi|255574578|ref|XP_002528200.1| regulator of telomere elongation helicase 1 rtel1, putative
[Ricinus communis]
gi|223532412|gb|EEF34207.1| regulator of telomere elongation helicase 1 rtel1, putative
[Ricinus communis]
Length = 1049
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 7 GKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRE 66
GK CH + R++ + V D+ K +G E I L +MGR
Sbjct: 144 GKAQTNACHYVCKR--REKRQCTHFARVSDYVRKNPHLGDEP------VDIEDLVKMGRR 195
Query: 67 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 126
G CPY+++R+ I+ Y+YL+D + + + S+++FDEAHN++++C D+
Sbjct: 196 FGPCPYYVSRELHKVVDILFAPYNYLIDRSYRKSLKIDWDK-SILIFDEAHNLESLCADA 254
Query: 127 LS 128
S
Sbjct: 255 AS 256
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 662 GKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRE 721
GK CH + R++ + V D+ K +G E I L +MGR
Sbjct: 144 GKAQTNACHYVCKR--REKRQCTHFARVSDYVRKNPHLGDEP------VDIEDLVKMGRR 195
Query: 722 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 781
G CPY+++R+ I+ Y+YL+D + + + S+++FDEAHN++++C D+
Sbjct: 196 FGPCPYYVSRELHKVVDILFAPYNYLIDRSYRKSLKIDWDK-SILIFDEAHNLESLCADA 254
Query: 782 LS 783
S
Sbjct: 255 AS 256
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 44/158 (27%)
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA-H 486
I + V FPYE Y Q YM ++ ++L ++ + LLE P+GTGKT LL +A+ +
Sbjct: 6 IRGIDVDFPYE-AYDCQLVYMEKVIQSLQSRCNALLESPTGTGKTLCLLCATLAWRKSLG 64
Query: 487 PLDVTK---------------------------LLYCSRTVPEIEKVVEELARLFDYYIK 519
P K ++Y SRT ++ +VV+EL R Y K
Sbjct: 65 PFTTGKIERNGRTAGSKSDDTPPSPSEGTALPTIVYTSRTHSQLRQVVQELKR-SSYRPK 123
Query: 520 HNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQ 557
++L SR+ LCIH D++S++R Q
Sbjct: 124 M--------VILGSREQLCIH------DEVSLLRGKAQ 147
Score = 44.3 bits (103), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 569 GVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW 628
GVV S S + RD + + G +V+ A +VPDG++ FF SY L+ + W
Sbjct: 477 GVVPVGPSGRSFNSSYRNRDSLEYKQELGNAIVNFARIVPDGLLVFFPSYYLLDQCIGCW 536
Score = 40.4 bits (93), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Query: 470 GKTTSLLSLI-----VAYMNAHPLDVTKLLYCSRTVPEIEKVVEELA-----RLFDYYIK 519
GK + LS VA + V ++ S T+ ++ +EL RL + ++
Sbjct: 410 GKASRTLSWWCFNPGVAMEEFSRMGVCSIILTSGTLSPMDSFAQELKLDFPIRLENPHVI 469
Query: 520 HNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLY 579
+++I G+V +S + RD + + G +V+ A +VPDG++ FF SY
Sbjct: 470 SSKQI-WAGVVPVGPSGRSFNSSYRNRDSLEYKQELGNAIVNFARIVPDGLLVFFPSYYL 528
Query: 580 LE 581
L+
Sbjct: 529 LD 530
>gi|401407959|ref|XP_003883428.1| conserved hypothetical protein [Neospora caninum Liverpool]
gi|325117845|emb|CBZ53396.1| conserved hypothetical protein [Neospora caninum Liverpool]
Length = 2564
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 7/85 (8%)
Query: 56 SITKLKEMGREL----GLCPYFLARQAIIHAKIVVYSYHYLLDPKI-ANVVSKELARSSV 110
S +++ + R+L G CPY + A +VV Y+Y+LDP + A+ +L + SV
Sbjct: 978 SRSRVSQKQRQLLSAAGACPYHATLSLLPAADLVVCPYNYVLDPGVSASSKLNDLLKGSV 1037
Query: 111 VVFDEAHNIDNVC--VDSLSVRINR 133
++FDE HN++++C V SL +R+ R
Sbjct: 1038 IIFDEGHNVESICREVGSLDLRLPR 1062
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 7/85 (8%)
Query: 711 SITKLKEMGREL----GLCPYFLARQAIIHAKIVVYSYHYLLDPKI-ANVVSKELARSSV 765
S +++ + R+L G CPY + A +VV Y+Y+LDP + A+ +L + SV
Sbjct: 978 SRSRVSQKQRQLLSAAGACPYHATLSLLPAADLVVCPYNYVLDPGVSASSKLNDLLKGSV 1037
Query: 766 VVFDEAHNIDNVC--VDSLSVRINR 788
++FDE HN++++C V SL +R+ R
Sbjct: 1038 IIFDEGHNVESICREVGSLDLRLPR 1062
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 415 LPMVRENYAMGL-MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTT 473
LP ++ + G I + V Y Q M + +A ++ H ++E P+GTGKT
Sbjct: 254 LPRLKRSRIKGREAIRGVDVLLHYSSTLTPQREVMAAVIQACQSEKHAIIESPTGTGKTA 313
Query: 474 SLLSLIVAYM-----NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTG 528
+LL +A+ A+ +V +++YC+RT + +V+ EL +
Sbjct: 314 ALLCATLAWQRDAQTEANSRNVGRIIYCTRTQKQASQVIGELKK---------SPYQPAA 364
Query: 529 LVLSSRKNLC 538
+ L+SR +LC
Sbjct: 365 VQLASRSHLC 374
>gi|431892148|gb|ELK02595.1| Putative ATP-dependent RNA helicase DDX11-like protein [Pteropus
alecto]
Length = 857
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 570 VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWY 629
++C S LE + R+ ++ G++L ++ VVP GVVCFF SY Y V A W
Sbjct: 613 IICSGPSNQQLEFTYLKRELPQMMDEIGRILCNLCNVVPGGVVCFFPSYEYQRQVHAHWD 672
Query: 630 DQGIIDNLQKRKLLFIETQDA 650
G++ L RK +F E + A
Sbjct: 673 KSGLLARLAVRKKIFQEPKRA 693
Score = 47.0 bits (110), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 8 KIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFYE-KFDAVGREAPLAPGVYSI 57
++++ RC + S + +A + P C FY K + R+ L V I
Sbjct: 292 QLINDRCMEMQRSKHESKSRAEDKEPKRRRQEPRGACPFYNYKQLQLLRDEVLVE-VKDI 350
Query: 58 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAH 117
+L +G+E CPY+ +R AI A++VV Y LL L + VV+ DEAH
Sbjct: 351 EQLVTLGKEARACPYYGSRFAIPAAQLVVLPYQMLLHAATRQAAGIRL-QGQVVIIDEAH 409
Query: 118 NI 119
N+
Sbjct: 410 NL 411
Score = 47.0 bits (110), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 663 KIVDGRCHSLTSSSVRDRHKAGENIP---------VCDFYE-KFDAVGREAPLAPGVYSI 712
++++ RC + S + +A + P C FY K + R+ L V I
Sbjct: 292 QLINDRCMEMQRSKHESKSRAEDKEPKRRRQEPRGACPFYNYKQLQLLRDEVLVE-VKDI 350
Query: 713 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAH 772
+L +G+E CPY+ +R AI A++VV Y LL L + VV+ DEAH
Sbjct: 351 EQLVTLGKEARACPYYGSRFAIPAAQLVVLPYQMLLHAATRQAAGIRL-QGQVVIIDEAH 409
Query: 773 NI 774
N+
Sbjct: 410 NL 411
>gi|448096961|ref|XP_004198556.1| Piso0_001932 [Millerozyma farinosa CBS 7064]
gi|359379978|emb|CCE82219.1| Piso0_001932 [Millerozyma farinosa CBS 7064]
Length = 824
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 565 VVPDGVVCFFTSYLYLESVFE----TRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLY 620
++PD + F Y SVFE R D+++I N G ++ I G V FF SY Y
Sbjct: 569 IIPDKNLIVFPIGTYGNSVFEFSYEKRGDLNMILNLGNVITQICENTKGGAVVFFPSYRY 628
Query: 621 LESVVASWYDQGIIDNLQKRKLLFIETQDALD 652
L V A W GI+ +++ R+ ++ E D+ D
Sbjct: 629 LNEVKAQWRIHGILRSIEDRRTVYYEPIDSAD 660
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 98/208 (47%), Gaps = 12/208 (5%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
++ I L +G L +CPY+ R + A+++ Y LL ++ ++ +++V
Sbjct: 295 IHDIEDLGSLGTGLRVCPYYSVRNGLKSAEVIASPYQILLQKSARETLNVDV-EDAIIVI 353
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ-TLEGTLKEMKEADSAKLREEYARLVEGL 827
DEAHN+ + + SV IN IE + I+ L +K++ + L + +L + +
Sbjct: 354 DEAHNLIDTIISLYSVSINLLEIEMIIKGIRYYLRKFMKKLNSGNRINLM-KLLKLCQSI 412
Query: 828 RD--AQSARETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL-- 883
++ +S + + V+ +EI T I I+ ++F ++SK+ I Y+
Sbjct: 413 QNFINKSIDRKESHNGSEVMVNEIFGDTTGDLINIYKVEKFL---EKSKIAYKIDTYMEK 469
Query: 884 TDNLTNLSTEEAVQLSK--RWLRQMAQP 909
+ LT + + L K ++L+ +A P
Sbjct: 470 EEGLTFIKKSSSPLLFKITKFLKCLANP 497
Score = 47.8 bits (112), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 19/198 (9%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
++ I L +G L +CPY+ R + A+++ Y LL ++ ++ +++V
Sbjct: 295 IHDIEDLGSLGTGLRVCPYYSVRNGLKSAEVIASPYQILLQKSARETLNVDV-EDAIIVI 353
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ-TLEGTLKEMKEADSA------KLREEYA 166
DEAHN+ + + SV IN IE + I+ L +K++ + KL +
Sbjct: 354 DEAHNLIDTIISLYSVSINLLEIEMIIKGIRYYLRKFMKKLNSGNRINLMKLLKLCQSIQ 413
Query: 167 RLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRV 226
+ D + + V+ N + D + NI E +F+E K ++
Sbjct: 414 NFINKSIDRKESHNGSEVMVNEIFGDTTGDLI---NIYKVE-------KFLEKSKIAYKI 463
Query: 227 QQVVQ-ESPATFLKDISS 243
++ E TF+K SS
Sbjct: 464 DTYMEKEEGLTFIKKSSS 481
>gi|340386378|ref|XP_003391685.1| PREDICTED: Fanconi anemia group J protein homolog, partial
[Amphimedon queenslandica]
Length = 291
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 35 CDFYEKFDA-VGREAPLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 89
C FY K +G + L + I L +GR++ CPY+ R A+I+ Y
Sbjct: 38 CAFYHKVQQKLGSQYKLRENGITTAWDIEDLVTLGRKIKTCPYYSTRALFEEAEIIFCPY 97
Query: 90 HYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEK 138
+YL+DP I + L S+++FDEAHN+++ ++ S+ +N +++
Sbjct: 98 NYLIDPLIREQMMIRL-EDSILIFDEAHNMEDAAREAASLTVNSNQLKE 145
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 690 CDFYEKFDA-VGREAPLAPG----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 744
C FY K +G + L + I L +GR++ CPY+ R A+I+ Y
Sbjct: 38 CAFYHKVQQKLGSQYKLRENGITTAWDIEDLVTLGRKIKTCPYYSTRALFEEAEIIFCPY 97
Query: 745 HYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEK 793
+YL+DP I + L S+++FDEAHN+++ ++ S+ +N +++
Sbjct: 98 NYLIDPLIREQMMIRL-EDSILIFDEAHNMEDAAREAASLTVNSNQLKE 145
>gi|284163630|ref|YP_003401909.1| DEAD/DEAH box helicase [Haloterrigena turkmenica DSM 5511]
gi|284013285|gb|ADB59236.1| DEAD_2 domain protein [Haloterrigena turkmenica DSM 5511]
Length = 723
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Query: 2 SKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPVCDFYEKF---DAVGREAPLAPGVYSI 57
S+ DG D R + S+ +R + E VCD+Y D A L V +
Sbjct: 144 SQGGDGGAADARSAVMDELESIEERLEDLEEQNVCDYYRNNLTQDTDDFFAWLFEDVRTP 203
Query: 58 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFD 114
++ E G C Y L ++ I +VV +YH+LLD I + L R + VFD
Sbjct: 204 EEIYEYAEREGFCGYELLKEGIEGVDLVVCNYHHLLDSMIREQFFRWLGRDPEDVIAVFD 263
Query: 115 EAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
EAHN+++ + + + RT + A+ +
Sbjct: 264 EAHNVEDAAREHATRTCSERTFDSALDEL 292
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Query: 657 SKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPVCDFYEKF---DAVGREAPLAPGVYSI 712
S+ DG D R + S+ +R + E VCD+Y D A L V +
Sbjct: 144 SQGGDGGAADARSAVMDELESIEERLEDLEEQNVCDYYRNNLTQDTDDFFAWLFEDVRTP 203
Query: 713 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFD 769
++ E G C Y L ++ I +VV +YH+LLD I + L R + VFD
Sbjct: 204 EEIYEYAEREGFCGYELLKEGIEGVDLVVCNYHHLLDSMIREQFFRWLGRDPEDVIAVFD 263
Query: 770 EAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
EAHN+++ + + + RT + A+ +
Sbjct: 264 EAHNVEDAAREHATRTCSERTFDSALDEL 292
>gi|390367138|ref|XP_792082.3| PREDICTED: probable ATP-dependent RNA helicase DDX11-like
[Strongylocentrotus purpuratus]
Length = 792
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 578 LYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNL 637
L L+ ++ RD ++ G++LV+I+ +VP GVVCFF SY Y + + W G++ L
Sbjct: 553 LELDFTYQHRDLPQMMDEVGRILVNISNIVPGGVVCFFPSYDYEKQIYQYWESHGVLTRL 612
Query: 638 QKRKLLFIETQDA 650
RK ++ E + A
Sbjct: 613 GHRKKIYREPRKA 625
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 14/144 (9%)
Query: 648 QDALDSRSVSKERDGKIVDGRCHSL------------TSSSVRDRHKAGENIPVCDFYEK 695
Q+ + +V K R +++ RC + S++ R ++ +++ C + +
Sbjct: 136 QNLCINEAVKKLRSMTLINDRCLEMQSKKKPAAKKDDDSTTKPKRKRSKQSLKACPHFSQ 195
Query: 696 FDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANV 755
+ +A V + +L ++G+EL CPY+ R A+ +A++VV Y+ LL
Sbjct: 196 GQLSLYKDRVAVEVMDMEQLGKVGKELKACPYYGTRYAVPNAQLVVLPYNILLHKSTRKA 255
Query: 756 VSKELARSSVVVFDEAHN-IDNVC 778
L + ++V+ DEAHN I+ +C
Sbjct: 256 CRINL-KGNIVIIDEAHNLIETIC 278
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 19 SSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQA 78
S++ R ++ +++ C + + + +A V + +L ++G+EL CPY+ R A
Sbjct: 174 STTKPKRKRSKQSLKACPHFSQGQLSLYKDRVAVEVMDMEQLGKVGKELKACPYYGTRYA 233
Query: 79 IIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN-IDNVC 123
+ +A++VV Y+ LL L + ++V+ DEAHN I+ +C
Sbjct: 234 VPNAQLVVLPYNILLHKSTRKACRINL-KGNIVIIDEAHNLIETIC 278
Score = 44.7 bits (104), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQ 598
++ RD ++ G++LV+I+ +VP GVVCFF SY Y + +++ + V+ G
Sbjct: 559 YQHRDLPQMMDEVGRILVNISNIVPGGVVCFFPSYDYEKQIYQYWESHGVLTRLGH 614
>gi|335438521|ref|ZP_08561264.1| DEAD_2 domain protein [Halorhabdus tiamatea SARL4B]
gi|334891566|gb|EGM29813.1| DEAD_2 domain protein [Halorhabdus tiamatea SARL4B]
Length = 722
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 12/168 (7%)
Query: 703 APLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELAR 762
A L V + ++ E GLC Y L ++ I +V+ +YH+LLDP I + L R
Sbjct: 195 AWLYDDVRTPDQVYEYAERQGLCGYELLKEGIDGVDLVICNYHHLLDPFIREQFFRWLGR 254
Query: 763 SS---VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE----GTLKEMKEADSAK 815
+ VFDEAHN+++ + + T+E+A+ ++ ++ G + E
Sbjct: 255 DPEDVIAVFDEAHNVEDAAREHARRTLAEPTLERALEELEDVDDPRAGPAGNVLETILTA 314
Query: 816 LREEYAR-LVEGLRDAQSARETDVVLANPVLPDE----ILQGKTDYGI 858
LRE Y L G R+ TD+ + N D+ ILQ T G+
Sbjct: 315 LRETYDDALGFGERETVDEEWTDLAIDNDDRRDDLTLSILQNYTGQGV 362
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 8/148 (5%)
Query: 48 APLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELAR 107
A L V + ++ E GLC Y L ++ I +V+ +YH+LLDP I + L R
Sbjct: 195 AWLYDDVRTPDQVYEYAERQGLCGYELLKEGIDGVDLVICNYHHLLDPFIREQFFRWLGR 254
Query: 108 SS---VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE----GTLKEMKEADSAK 160
+ VFDEAHN+++ + + T+E+A+ ++ ++ G + E
Sbjct: 255 DPEDVIAVFDEAHNVEDAAREHARRTLAEPTLERALEELEDVDDPRAGPAGNVLETILTA 314
Query: 161 LREEYAR-LVEGLRDAQSARETDVVLAN 187
LRE Y L G R+ TD+ + N
Sbjct: 315 LRETYDDALGFGERETVDEEWTDLAIDN 342
>gi|448110971|ref|XP_004201733.1| Piso0_001932 [Millerozyma farinosa CBS 7064]
gi|359464722|emb|CCE88427.1| Piso0_001932 [Millerozyma farinosa CBS 7064]
Length = 824
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 557 QLLVDIAC--VVPDGVVCFFTSYLYLESVFE----TRDDISVIRNYGQLLVDIACVVPDG 610
Q + +C ++PD + F Y SVFE R D+++I N G + I G
Sbjct: 559 QSIKKFSCDHIIPDKNLIVFPIGKYGNSVFEFSYEKRSDLNMILNLGNAINGICEKTKGG 618
Query: 611 VVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALD 652
V FF SY YL V A W GI+ +++ R+ ++ E D+ D
Sbjct: 619 AVVFFPSYRYLNEVKAHWQTHGILRSIENRRTVYYEPTDSAD 660
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 92/196 (46%), Gaps = 15/196 (7%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
++ I L +G L +CPY+ R + A+++ Y LL +++ ++ +++V
Sbjct: 295 IHDIEDLGSLGTGLRICPYYSVRHGLKSAEVIACPYQILLQKSAREMLNVDVD-DAIIVI 353
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT-LEGTLKEMKEADSAKLREEYARLVEGL 827
DEAHN+ + + SV IN IE + ++ L+ +K++ + L + +L + +
Sbjct: 354 DEAHNLIDTIISLYSVSINLLEIEMVIKGVKHYLKKFMKKLNSGNRINLM-KLLKLCQSI 412
Query: 828 RD--AQSARETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTD 885
++ +S + + + V+ EI T I I+ ++F ++SK+ I Y
Sbjct: 413 QNFIDKSIYQKEARSGSEVIVSEIFGDTTGDLINIYKVEKFL---EKSKIAYKIDTY--- 466
Query: 886 NLTNLSTEEAVQLSKR 901
+ EE + +K+
Sbjct: 467 ----MEKEEGLDFTKK 478
Score = 46.6 bits (109), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
++ I L +G L +CPY+ R + A+++ Y LL +++ ++ +++V
Sbjct: 295 IHDIEDLGSLGTGLRICPYYSVRHGLKSAEVIACPYQILLQKSAREMLNVDVD-DAIIVI 353
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT-LEGTLKEMKEADSAKL 161
DEAHN+ + + SV IN IE + ++ L+ +K++ + L
Sbjct: 354 DEAHNLIDTIISLYSVSINLLEIEMVIKGVKHYLKKFMKKLNSGNRINL 402
>gi|168030243|ref|XP_001767633.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681162|gb|EDQ67592.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1378
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 51 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 110
A ++ I L E+G ++ C YF AR A IV Y+Y+LDP I + + L + ++
Sbjct: 228 ANNIHDIEDLVELGHKVKGCAYFAARALATEADIVFCPYNYILDPIIRSAMEVNL-QGAI 286
Query: 111 VVFDEAHNIDNVCVDSLSV 129
VV DEAHNI++V ++ S+
Sbjct: 287 VVLDEAHNIEDVAREAGSI 305
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 706 APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSV 765
A ++ I L E+G ++ C YF AR A IV Y+Y+LDP I + + L + ++
Sbjct: 228 ANNIHDIEDLVELGHKVKGCAYFAARALATEADIVFCPYNYILDPIIRSAMEVNL-QGAI 286
Query: 766 VVFDEAHNIDNVCVDSLSV 784
VV DEAHNI++V ++ S+
Sbjct: 287 VVLDEAHNIEDVAREAGSI 305
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
L + ++ D S G +L ++ VVPDG + FF SY +L+ + A W G L
Sbjct: 569 LNASYKNADGYSFQDALGVVLEEVFKVVPDGALTFFPSYKFLDKLCARWKSTGQWGRLSS 628
Query: 640 RKLLFIETQDALD 652
K LF+E + D
Sbjct: 629 VKELFLEPRGNND 641
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGH--------CLLEMPSGTGKTTSLLS 477
L I +PV FPY+ Y Q A+M ++ AL+ H LLE P+G+GKT +LL
Sbjct: 8 LRICGIPVDFPYK-PYGTQLAFMGKVLAALEQSRHSHRSCSVNALLESPTGSGKTLALLC 66
Query: 478 LIVAYMNAHP 487
+A+ P
Sbjct: 67 ATLAWQKQFP 76
>gi|302818654|ref|XP_002991000.1| hypothetical protein SELMODRAFT_132642 [Selaginella moellendorffii]
gi|300141331|gb|EFJ08044.1| hypothetical protein SELMODRAFT_132642 [Selaginella moellendorffii]
Length = 834
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKL 642
+++R +I G+LLV+I+ +VP+G+V FF S+ Y V W GI+ ++ K+K
Sbjct: 592 TYQSRSSPQMIEELGRLLVNISVIVPEGIVVFFPSFEYESQVHKCWDKSGILSSILKKKN 651
Query: 643 LFIETQDALDSRSVSKERDGKIVDG 667
+F E ++A +V +E I G
Sbjct: 652 IFREPRNASAVEAVLQEYKTSITTG 676
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 46 REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL 105
+EA +A I L +G++LG CPY+ +R ++ A++VV Y LL + L
Sbjct: 278 KEAVVASQPMDIEDLVHLGQKLGSCPYYGSRNSLPMAQVVVLPYQSLLHAATRESLGINL 337
Query: 106 ARSSVVVFDEAHNIDNVCVDSLSVRIN 132
+ SVV+FDEAHN+ + ++ S +++
Sbjct: 338 -KDSVVIFDEAHNLVDTVTNTYSSQLS 363
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 701 REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL 760
+EA +A I L +G++LG CPY+ +R ++ A++VV Y LL + L
Sbjct: 278 KEAVVASQPMDIEDLVHLGQKLGSCPYYGSRNSLPMAQVVVLPYQSLLHAATRESLGINL 337
Query: 761 ARSSVVVFDEAHNIDNVCVDSLSVRIN 787
+ SVV+FDEAHN+ + ++ S +++
Sbjct: 338 -KDSVVIFDEAHNLVDTVTNTYSSQLS 363
Score = 41.2 bits (95), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVI 593
+++R +I G+LLV+I+ +VP+G+V FF S+ Y V + D ++
Sbjct: 593 YQSRSSPQMIEELGRLLVNISVIVPEGIVVFFPSFEYESQVHKCWDKSGIL 643
>gi|448680071|ref|ZP_21690510.1| helicase [Haloarcula argentinensis DSM 12282]
gi|445769719|gb|EMA20792.1| helicase [Haloarcula argentinensis DSM 12282]
Length = 725
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 92/224 (41%), Gaps = 21/224 (9%)
Query: 647 TQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLA 706
+ +A+++R+ E ++ D R T S D + + +FY + L
Sbjct: 149 SSEAMEARNAVVEELRELQDEREEIETERSTCDHYYRNLTVDTSEFY---------SWLF 199
Query: 707 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS-- 764
V + + E + GLC Y L ++ + +VV +YH+LLDP I + R
Sbjct: 200 DDVRTPDDVYEYAHQQGLCGYELLKEGMDGVDLVVCNYHHLLDPTIREQFFHWIGRDPED 259
Query: 765 -VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMK----EADSAKLREE 819
+ VFDEAHN+++ D + T+++A+ + E + E L E
Sbjct: 260 IIAVFDEAHNVESAARDHARRTLTENTLDQALDELDGEEDARTDAAANVIETFRDALVEA 319
Query: 820 YARLVE-GLRDAQSARETDVVLANPVLPDEI----LQGKTDYGI 858
Y E G R A DV +AN D + LQG T G
Sbjct: 320 YEDSFEFGARAAVDEHWDDVTIANDDRKDNLTLAFLQGYTGPGF 363
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 14/117 (11%)
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHN 118
E + GLC Y L ++ + +VV +YH+LLDP I + R + VFDEAHN
Sbjct: 210 EYAHQQGLCGYELLKEGMDGVDLVVCNYHHLLDPTIREQFFHWIGRDPEDIIAVFDEAHN 269
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDA 175
+++ D RRT+ + TL+ L E+ + A+ + A ++E RDA
Sbjct: 270 VESAARDHA-----RRTLTE-----NTLDQALDELDGEEDART-DAAANVIETFRDA 315
>gi|76801304|ref|YP_326312.1| DNA repair helicase-like protein [Natronomonas pharaonis DSM 2160]
gi|76557169|emb|CAI48744.1| DNA repair helicase Rad3 [Natronomonas pharaonis DSM 2160]
Length = 722
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 33/192 (17%)
Query: 654 RSVSKERDGKIVDGRCHSL--------TSSSVRDRHKAGENIPVCDFYEKFDAVGREAPL 705
R SK DG + R L ++ ++R+ VCD Y K + G
Sbjct: 141 RDASKAGDGDAAEARGTVLDELDELEASAEALREERN------VCDRYYK-NLTGETDEF 193
Query: 706 APGVY----SITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELA 761
+Y + ++ E GLC Y L + I +V+ +YH+LLDP I + L
Sbjct: 194 YQWLYEDVRTPEEIYEYADRQGLCGYELLKDGIEGIDLVICNYHHLLDPMIREQFFRWLG 253
Query: 762 RSS---VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLRE 818
R + VFDEAHN+ + D RRT+ + +TL+G L E+++ A+ +
Sbjct: 254 RDPEDVIAVFDEAHNVADAARDHA-----RRTLAE-----RTLDGALDELEDVSDARA-D 302
Query: 819 EYARLVEGLRDA 830
A +V +DA
Sbjct: 303 AAANVVGAFKDA 314
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 14/111 (12%)
Query: 68 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNVCV 124
GLC Y L + I +V+ +YH+LLDP I + L R + VFDEAHN+ +
Sbjct: 215 GLCGYELLKDGIEGIDLVICNYHHLLDPMIREQFFRWLGRDPEDVIAVFDEAHNVADAAR 274
Query: 125 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDA 175
D RRT+ + +TL+G L E+++ A+ + A +V +DA
Sbjct: 275 DHA-----RRTLAE-----RTLDGALDELEDVSDARA-DAAANVVGAFKDA 314
>gi|339240165|ref|XP_003376008.1| fanconi anemia group J protein-like protein [Trichinella spiralis]
gi|316975301|gb|EFV58747.1| fanconi anemia group J protein-like protein [Trichinella spiralis]
Length = 822
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 57/98 (58%), Gaps = 11/98 (11%)
Query: 54 VYSITKLKEMGRELGLCPYF-----LARQAIIHAKIVVYSYHYLLDPKIANVVSKELARS 108
+ I + ++G +CPYF LAR A +++ Y+YL+DP I + + L +
Sbjct: 264 AWDIEDIMQLGECHTICPYFACIDILARDA----QLIFCPYNYLIDPMIRDTLQISL-KG 318
Query: 109 SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 146
+++FDEAHN++++C ++ S I + ++ A+ NI TL
Sbjct: 319 QIIIFDEAHNMEDICREASSFEIKKMELDMAI-NILTL 355
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 57/98 (58%), Gaps = 11/98 (11%)
Query: 709 VYSITKLKEMGRELGLCPYF-----LARQAIIHAKIVVYSYHYLLDPKIANVVSKELARS 763
+ I + ++G +CPYF LAR A +++ Y+YL+DP I + + L +
Sbjct: 264 AWDIEDIMQLGECHTICPYFACIDILARDA----QLIFCPYNYLIDPMIRDTLQISL-KG 318
Query: 764 SVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 801
+++FDEAHN++++C ++ S I + ++ A+ NI TL
Sbjct: 319 QIIIFDEAHNMEDICREASSFEIKKMELDMAI-NILTL 355
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 407 MTLARPCLLPMVRENYAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMP 466
M + C++P+ + N A+G + FP+ YP Q A M +AL +CL+E P
Sbjct: 1 MKIINNCIIPLTQMNLAVG----GADISFPFS-PYPSQRAIMDRTLRALKHSNNCLIESP 55
Query: 467 SGTGKTTSLLSLIVAY 482
+GTGK+ +LL +A+
Sbjct: 56 TGTGKSLALLCSALAW 71
Score = 43.1 bits (100), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 93/231 (40%), Gaps = 43/231 (18%)
Query: 450 ELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEE 509
ELK L CLLE+ S + + T +I + KLL C + + ++ ++
Sbjct: 413 ELKTVLS----CLLEVDSNSSQGTGKHRVI---------NDDKLLNCIKPMEKLLYALDY 459
Query: 510 LARLFDYYIKHNEEINMTGLVL---------SSRKNLCIHSEFETR--------DDISVI 552
L R FD Y + N + L S KNL + ++ +S +
Sbjct: 460 LYRDFDNYGEKNFGCYSYRMCLRKERLELLKSDSKNLRAFDDVSSKTKSVILASGTLSPL 519
Query: 553 RNYG-------QLLVDIACVVPD-----GVVCFFTSYLYLESVFETRDDISVIRNYGQLL 600
++Y Q ++ VVP G + + + L++ F+ + + LL
Sbjct: 520 KSYATELGLPFQFSLEAPHVVPPERMWIGSIGVGPNDIPLKATFQQAESFAFQDELASLL 579
Query: 601 VDIACVVPDGVVCFFTSYLYLESVVASWYD-QGIIDNLQKRKLLFIETQDA 650
D+ VVP G++CF SY L +V W G+ D L K + +E + +
Sbjct: 580 TDVCNVVPGGILCFIPSYRLLNKLVNRWKQVPGLWDRLNDSKQVIVEPKGS 630
>gi|225685122|gb|EEH23406.1| CHL1 helicase [Paracoccidioides brasiliensis Pb03]
Length = 844
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 10/103 (9%)
Query: 554 NYGQLL-VDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVV 612
+YG ++ D +P F T + + + R+D S+I G+ + + V+PDGVV
Sbjct: 558 SYGHVIPSDNLKAMPVTKGAFNTEFDF---TYAKRNDESLIMGLGRTIAALCRVIPDGVV 614
Query: 613 CFFTSYLYLESVVASW------YDQGIIDNLQKRKLLFIETQD 649
FF SY YL V+ W ++D++QK K+LF E+QD
Sbjct: 615 VFFPSYDYLNQVLTIWKKLLPNSQLSVLDSIQKSKVLFHESQD 657
Score = 48.1 bits (113), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 84/185 (45%), Gaps = 13/185 (7%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V I + ++G ++G+CPY+ AR + +++I+ Y LL ++ L + VV+
Sbjct: 282 VLDIEDIGKIGSKIGVCPYYAARSIVKYSEIITLPYPLLLQRSAREALNISL-KHHVVII 340
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL- 827
DEAHN+ + + SV ++ ++ A+ + T K + + RLV L
Sbjct: 341 DEAHNLMDAISNIHSVSVSLSQLKLALYQLTTYARKYKTRLNGSNRVYVTQVIRLVNSLS 400
Query: 828 ----RDAQSARETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
R + R + VL P +I+ GK G+ + +R +SKL + + ++
Sbjct: 401 EYLTRVLERNRPAEGVLR----PSDIMTGK---GVDQINPHKLSRYLHKSKLARKVDGFI 453
Query: 884 TDNLT 888
+ T
Sbjct: 454 EHSST 458
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V I + ++G ++G+CPY+ AR + +++I+ Y LL ++ L + VV+
Sbjct: 282 VLDIEDIGKIGSKIGVCPYYAARSIVKYSEIITLPYPLLLQRSAREALNISL-KHHVVII 340
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT 145
DEAHN+ + + SV ++ ++ A+ + T
Sbjct: 341 DEAHNLMDAISNIHSVSVSLSQLKLALYQLTT 372
>gi|322368199|ref|ZP_08042768.1| DEAD_2 domain protein [Haladaptatus paucihalophilus DX253]
gi|320552215|gb|EFW93860.1| DEAD_2 domain protein [Haladaptatus paucihalophilus DX253]
Length = 727
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 50 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 109
L GV + + E + +C Y L + + +VV +YH+LLDP I + L R
Sbjct: 196 LYDGVRTPDDIYEYAEQQHMCGYELLKDGMEGVDLVVCNYHHLLDPMIREQFFRWLGRDP 255
Query: 110 ---VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 144
+ +FDEAHNI+ D S + TI+ A+ +Q
Sbjct: 256 EDVITIFDEAHNIEGTARDHASRTLTENTIDSALDELQ 293
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 705 LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 764
L GV + + E + +C Y L + + +VV +YH+LLDP I + L R
Sbjct: 196 LYDGVRTPDDIYEYAEQQHMCGYELLKDGMEGVDLVVCNYHHLLDPMIREQFFRWLGRDP 255
Query: 765 ---VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 799
+ +FDEAHNI+ D S + TI+ A+ +Q
Sbjct: 256 EDVITIFDEAHNIEGTARDHASRTLTENTIDSALDELQ 293
>gi|167527059|ref|XP_001747862.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773611|gb|EDQ87249.1| predicted protein [Monosiga brevicollis MX1]
Length = 812
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 562 IAC--VVPDGVVCFF-----TSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCF 614
AC VVP +C ++ L F TR +++R G+ L+ +A VP G+V F
Sbjct: 565 FACGHVVPSSHLCPIVLTQTSNRQPLRLTFSTRQSEAMMRELGESLIRVAATVPAGLVVF 624
Query: 615 FTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALD 652
F SY Y + +V W QG++ ++ K +F E + D
Sbjct: 625 FPSYEYEQKLVEFWTRQGVLRKFERHKPIFREPRAGKD 662
Score = 40.8 bits (94), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
+ +L M C Y+ AR+A+ A++VV Y+ LL K + S ++VV+ DEA
Sbjct: 288 VEELAAMASREKACAYYAARKAVAPAELVVVPYNMLLH-KSTRLASGLQLTNNVVIIDEA 346
Query: 117 HNIDNVCVDSLSVRIN 132
HN+ + + SV +
Sbjct: 347 HNLMDTIANIHSVTVT 362
Score = 40.8 bits (94), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
+ +L M C Y+ AR+A+ A++VV Y+ LL K + S ++VV+ DEA
Sbjct: 288 VEELAAMASREKACAYYAARKAVAPAELVVVPYNMLLH-KSTRLASGLQLTNNVVIIDEA 346
Query: 772 HNIDNVCVDSLSVRIN 787
HN+ + + SV +
Sbjct: 347 HNLMDTIANIHSVTVT 362
>gi|67470878|ref|XP_651401.1| DNA repair helicase [Entamoeba histolytica HM-1:IMSS]
gi|56468131|gb|EAL46015.1| DNA repair helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449710566|gb|EMD49619.1| regulator of telomere elongation helicase rtel1, putative
[Entamoeba histolytica KU27]
Length = 1033
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 21/121 (17%)
Query: 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLL 494
FPY+ P Q M +++A+ H L+E P+GTGKT LL + + + +++
Sbjct: 86 FPYQPYQP-QIEMMNSIQQAVKEGKHLLMESPTGTGKTLVLLHSTLTFPDM------RVV 138
Query: 495 YCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRN 554
Y SRT ++ +VV E ++ N+ G+VL+SR CI++ +T DD +N
Sbjct: 139 YASRTHNQLAQVVNETKKIG----------NIKGIVLASRDLYCIYNPIKTCDD----KN 184
Query: 555 Y 555
Y
Sbjct: 185 Y 185
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 26/182 (14%)
Query: 723 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIAN-----VVSKELA--RSSVVVFDEAHNID 775
LCPY+ AR A + +K+++ Y+++ I + ++ + A R V+V DEAHN++
Sbjct: 247 NLCPYYYARWATVRSKLILCPYNFVTSVSIRHSSDIFLIDQNSAHQREFVLVMDEAHNVE 306
Query: 776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEA-DSAKLREEYARLVEGLRDAQSAR 834
+ +DSL+ + + + IQ + +K+ E + L E VE
Sbjct: 307 DAFMDSLTFNFTESLLNQTIETIQFHKKRIKQTPENLLTISLLTELISTVESF------- 359
Query: 835 ETDVVLANPVLPDEILQGKTDYGIMIFADKRF----ARSDKRSKLPKWIQEYL--TDNLT 888
+ + N LP + Y +F D+ F RS S+L + I EY+ DNL
Sbjct: 360 --SIWMKNRSLP---YKDSEHYLYGVFEDQAFLPFVERSPSSSRLLEAISEYIKVVDNLD 414
Query: 889 NL 890
+L
Sbjct: 415 DL 416
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 68 GLCPYFLARQAIIHAKIVVYSYHYLLDPKIAN-----VVSKELA--RSSVVVFDEAHNID 120
LCPY+ AR A + +K+++ Y+++ I + ++ + A R V+V DEAHN++
Sbjct: 247 NLCPYYYARWATVRSKLILCPYNFVTSVSIRHSSDIFLIDQNSAHQREFVLVMDEAHNVE 306
Query: 121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKE 155
+ +DSL+ + + + IQ + +K+ E
Sbjct: 307 DAFMDSLTFNFTESLLNQTIETIQFHKKRIKQTPE 341
Score = 46.6 bits (109), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%)
Query: 585 ETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLF 644
+T D +I G + + P G + FF+SY L +V W GI L K K +F
Sbjct: 556 KTSQDNEMIEQAGDTMFRVLSKSPGGALVFFSSYNMLNRIVELWKQHGIYTQLNKLKAIF 615
Query: 645 IETQDALDSRSVSKE 659
IE++D + + KE
Sbjct: 616 IESKDKSEFKKDFKE 630
>gi|170089159|ref|XP_001875802.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164649062|gb|EDR13304.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 854
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%)
Query: 570 VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWY 629
VVC LE + D +VI GQ+L + A +VP G++ FF SY +L A+W
Sbjct: 608 VVCKGPRGGDLEFKAAQQGDPAVISELGQILFNFASLVPAGMIVFFPSYHFLNVAKAAWT 667
Query: 630 DQGIIDNLQKRKLLFIETQDALDSRSVSKE 659
G+++ +K F E ++++D V +E
Sbjct: 668 KSGMLEKFGLKKTTFFEPEESVDVEKVLQE 697
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 21/142 (14%)
Query: 636 NLQKRKLLFIETQDALDSRSVS---KERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDF 692
+L RK L I + SR + +E G+ + RC L + E++ + DF
Sbjct: 248 SLGSRKQLCINDELRAKSRDLDESCRELLGEKAEKRCQYLP--------RIEEDVKMLDF 299
Query: 693 YEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKI 752
++ A ++ I L GR +CPYF +R+AI A++V Y+ LL
Sbjct: 300 RDQILAYPKD---------IEDLATAGRHAHICPYFGSRRAIPQAELVTLPYNLLLQKSA 350
Query: 753 ANVVSKELARSSVVVFDEAHNI 774
+ +L + +VV DEAHN+
Sbjct: 351 REALGIDL-KDQIVVIDEAHNL 371
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 2 SKERDGKIVDGRCHSLTSSSVRDR----HKAGENIPVCDFYEKFDAVGREAPLAPGVYSI 57
+K RD +D C L R + E++ + DF ++ A ++ I
Sbjct: 263 AKSRD---LDESCRELLGEKAEKRCQYLPRIEEDVKMLDFRDQILAYPKD---------I 310
Query: 58 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAH 117
L GR +CPYF +R+AI A++V Y+ LL + +L + +VV DEAH
Sbjct: 311 EDLATAGRHAHICPYFGSRRAIPQAELVTLPYNLLLQKSAREALGIDL-KDQIVVIDEAH 369
Query: 118 NI 119
N+
Sbjct: 370 NL 371
>gi|388583056|gb|EIM23359.1| DNA repair helicase [Wallemia sebi CBS 633.66]
Length = 831
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 43/69 (62%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
FE R + ++ G ++ ++ ++PDG+V FF SY YL +V + W G++ ++++K +
Sbjct: 608 FENRSKVDLLNELGMIIQNLVNLIPDGLVIFFPSYGYLNTVESHWKASGLLKRIEQKKKV 667
Query: 644 FIETQDALD 652
F E +++ D
Sbjct: 668 FREPKESTD 676
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Query: 35 CDFYEKFDAVG-----REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 89
C FY K + R+ LA + ++ L+E+G+ L +CPY+ +R+AI ++I Y
Sbjct: 276 CKFYPKIEEQTKLLEFRDHALA-SIRNVEDLEELGKNLNVCPYYGSRRAIKQSEICTLPY 334
Query: 90 HYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT-LEG 148
+ LL + + L + +VV DEAHN+ + + S ++ +T+ A+ + T ++
Sbjct: 335 NLLLSKRARESMGISL-KDHIVVIDEAHNLIDTILAVHSCSVSLKTLNAAMKALSTYIQR 393
Query: 149 TLKEMKEADSAKLREEYARLVEGL 172
K +K L+ YA+ ++GL
Sbjct: 394 YGKRLKGNHVVSLK-LYAKTLKGL 416
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Query: 690 CDFYEKFDAVG-----REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSY 744
C FY K + R+ LA + ++ L+E+G+ L +CPY+ +R+AI ++I Y
Sbjct: 276 CKFYPKIEEQTKLLEFRDHALA-SIRNVEDLEELGKNLNVCPYYGSRRAIKQSEICTLPY 334
Query: 745 HYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT-LEG 803
+ LL + + L + +VV DEAHN+ + + S ++ +T+ A+ + T ++
Sbjct: 335 NLLLSKRARESMGISL-KDHIVVIDEAHNLIDTILAVHSCSVSLKTLNAAMKALSTYIQR 393
Query: 804 TLKEMKEADSAKLREEYARLVEGL 827
K +K L+ YA+ ++GL
Sbjct: 394 YGKRLKGNHVVSLK-LYAKTLKGL 416
>gi|399576270|ref|ZP_10770027.1| DNA helicase, rad3 [Halogranum salarium B-1]
gi|399238981|gb|EJN59908.1| DNA helicase, rad3 [Halogranum salarium B-1]
Length = 729
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 15/113 (13%)
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHN 118
E E G C Y L ++ + +VV +YH+LLDP I + L R + VFDEAHN
Sbjct: 208 EYAEEQGYCGYELLKEGMEGVDLVVCNYHHLLDPMIREQFFRWLDRDPDDVITVFDEAHN 267
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEG 171
I+ D + RT+ + TLE L E+ + D + R E+AR V G
Sbjct: 268 IEAAARDHAT-----RTLTE-----NTLESALSELDDVDDS--RAEHARNVVG 308
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 15/113 (13%)
Query: 717 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHN 773
E E G C Y L ++ + +VV +YH+LLDP I + L R + VFDEAHN
Sbjct: 208 EYAEEQGYCGYELLKEGMEGVDLVVCNYHHLLDPMIREQFFRWLDRDPDDVITVFDEAHN 267
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEG 826
I+ D + RT+ + TLE L E+ + D + R E+AR V G
Sbjct: 268 IEAAARDHAT-----RTLTE-----NTLESALSELDDVDDS--RAEHARNVVG 308
>gi|110669569|ref|YP_659380.1| DNA repair helicase-like protein [Haloquadratum walsbyi DSM 16790]
gi|109627316|emb|CAJ53806.1| DNA repair helicase Rad3 [Haloquadratum walsbyi DSM 16790]
Length = 731
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 69 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVD 125
LC Y L ++ I +V+ +YH+LLDP I + L R V +FDEAHNI++ D
Sbjct: 219 LCGYELLKEGIEGVDLVICNYHHLLDPAIREQFFRWLGRDPDDIVTIFDEAHNIESAARD 278
Query: 126 SLSVRINRRTIEKAVGNIQTLEGTLKE----MKEADSAKLREEYARLVE-GLRDAQSARE 180
+ T+E+A+ I+ E + E + EA L+ YA G R+ ++
Sbjct: 279 HAGRTLTENTLEEALTEIKDCEDSRAEPAANVFEAFLTALQTTYADAFGFGEREQVTSEW 338
Query: 181 TDVVLANPVLPDEILQEVV 199
D+ +AN D++ E +
Sbjct: 339 YDLTVANTDRRDDLTLEFL 357
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 8/134 (5%)
Query: 724 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVD 780
LC Y L ++ I +V+ +YH+LLDP I + L R V +FDEAHNI++ D
Sbjct: 219 LCGYELLKEGIEGVDLVICNYHHLLDPAIREQFFRWLGRDPDDIVTIFDEAHNIESAARD 278
Query: 781 SLSVRINRRTIEKAVGNIQTLEGTLKE----MKEADSAKLREEYARLVE-GLRDAQSARE 835
+ T+E+A+ I+ E + E + EA L+ YA G R+ ++
Sbjct: 279 HAGRTLTENTLEEALTEIKDCEDSRAEPAANVFEAFLTALQTTYADAFGFGEREQVTSEW 338
Query: 836 TDVVLANPVLPDEI 849
D+ +AN D++
Sbjct: 339 YDLTVANTDRRDDL 352
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
FFPYE YP Q++ M E+ +ALD + L E GTGKT S L +AY
Sbjct: 10 FFPYEEPYPNQHSAMSEIAEALDEQRDVLFEGAPGTGKTLSALCPAIAY 58
>gi|385805025|ref|YP_005841425.1| DNA repair helicase Rad3 [Haloquadratum walsbyi C23]
gi|339730517|emb|CCC41858.1| DNA repair helicase Rad3 [Haloquadratum walsbyi C23]
Length = 731
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 69 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVD 125
LC Y L ++ I +V+ +YH+LLDP I + L R V +FDEAHNI++ D
Sbjct: 219 LCGYELLKEGIEGVDLVICNYHHLLDPAIREQFFRWLGRDPDDIVTIFDEAHNIESAARD 278
Query: 126 SLSVRINRRTIEKAVGNIQTLEGTLKE----MKEADSAKLREEYARLVE-GLRDAQSARE 180
+ T+E+A+ I+ E + E + EA L+ YA G R+ ++
Sbjct: 279 HAGRTLTENTLEEALTEIKDCEDSRAEPAANVFEAFLTALQTTYADAFGFGEREQVTSEW 338
Query: 181 TDVVLANPVLPDEILQEVV 199
D+ +AN D++ E +
Sbjct: 339 YDLTVANTDRRDDLTLEFL 357
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 8/134 (5%)
Query: 724 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVD 780
LC Y L ++ I +V+ +YH+LLDP I + L R V +FDEAHNI++ D
Sbjct: 219 LCGYELLKEGIEGVDLVICNYHHLLDPAIREQFFRWLGRDPDDIVTIFDEAHNIESAARD 278
Query: 781 SLSVRINRRTIEKAVGNIQTLEGTLKE----MKEADSAKLREEYARLVE-GLRDAQSARE 835
+ T+E+A+ I+ E + E + EA L+ YA G R+ ++
Sbjct: 279 HAGRTLTENTLEEALTEIKDCEDSRAEPAANVFEAFLTALQTTYADAFGFGEREQVTSEW 338
Query: 836 TDVVLANPVLPDEI 849
D+ +AN D++
Sbjct: 339 YDLTVANTDRRDDL 352
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
FFPYE YP Q++ M E+ +ALD + L E GTGKT S L +AY
Sbjct: 10 FFPYEEPYPNQHSAMSEIAEALDEQRDVLFEGAPGTGKTLSALCPAIAY 58
>gi|160330987|ref|XP_001712201.1| rad3 [Hemiselmis andersenii]
gi|159765648|gb|ABW97876.1| rad3 [Hemiselmis andersenii]
Length = 756
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 5/144 (3%)
Query: 424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
M I+++ V FP+ I+PEQ M LKK D K H ++ +P G G + + ++Y
Sbjct: 1 MKFFIENVYVLFPFNIIFPEQIQLMYILKKLFDNKSHGIMGIPPGIGFSMVTICFFISYN 60
Query: 484 NAHPLDVTKLLYCSR----TVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCI 539
+ L KL+YC R ++ IE+ L + + N EI+ V +K LCI
Sbjct: 61 FSTKLK-KKLIYCLRKEVDSISLIEQFRTYLGESNEKFSIKNFEISPQITVPFGKKTLCI 119
Query: 540 HSEFETRDDISVIRNYGQLLVDIA 563
+ I I ++ + L+ +
Sbjct: 120 EERLKPLTKIDEIEDFCKSLLAFS 143
>gi|449300032|gb|EMC96045.1| hypothetical protein BAUCODRAFT_514453 [Baudoinia compniacensis
UAMH 10762]
Length = 831
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 18/154 (11%)
Query: 641 KLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVG 700
K++ + Q A++ R V ++ + RC L S K E++ V DF
Sbjct: 255 KVIKLGDQTAINERCVELQQTKTPAEHRCPYLPS-------KDNEDL-VLDF-------- 298
Query: 701 REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL 760
R+ LA + I L E+G LG+CPY+ +R AI A++V Y LL + + L
Sbjct: 299 RDHALAR-IRDIEDLAEVGARLGICPYYASRTAIGAAELVTLPYPLLLQKSARDALGISL 357
Query: 761 ARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKA 794
R VVV DEAHN+ + S +I+ +E++
Sbjct: 358 -RGQVVVIDEAHNLASAVEGIYSAKISDMLVERS 390
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
+ I L E+G LG+CPY+ +R AI A++V Y LL + + L R VVV
Sbjct: 306 IRDIEDLAEVGARLGICPYYASRTAIGAAELVTLPYPLLLQKSARDALGISL-RGQVVVI 364
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKA 139
DEAHN+ + S +I+ +E++
Sbjct: 365 DEAHNLASAVEGIYSAKISDMLVERS 390
Score = 43.9 bits (102), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
+E +++R+D + +R G L+ +A V G+V F SY +L+ + W+ +I L++
Sbjct: 603 IELSYKSRNDATAVR-IGDALLKVATYVQGGLVVFLPSYGFLQQLYDCWHAHSMIARLEQ 661
Query: 640 RKLLFIETQDALDSRSVSKE 659
K +F DSR++S E
Sbjct: 662 IKAVF------WDSRTMSAE 675
>gi|435845561|ref|YP_007307811.1| DNA helicase, Rad3 [Natronococcus occultus SP4]
gi|433671829|gb|AGB36021.1| DNA helicase, Rad3 [Natronococcus occultus SP4]
Length = 725
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 15/168 (8%)
Query: 638 QKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPVCDFYEKF 696
++++ L E+Q+ D G D R + S+ DR + E VCD+Y
Sbjct: 135 RRQRELLAESQEGSDG--------GSAADARSAVMDELESIEDRLEDLEEKNVCDYYRNN 186
Query: 697 ---DAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIA 753
D A L V + ++ E + C Y L ++ I +VV +YH+LLD I
Sbjct: 187 LTQDTDDFFAWLFDDVRTPDEIYEYAEQREFCGYELLKEGIEGVDLVVCNYHHLLDSTIR 246
Query: 754 NVVSKELARSS---VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
+ L R + VFDEAHN+++ + + + RT + A+ +
Sbjct: 247 EQFFRWLGRDPEDVIAVFDEAHNVEDAAREHATRTCSERTFDSALDEL 294
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 7/144 (4%)
Query: 7 GKIVDGRCHSLTS-SSVRDRHKAGENIPVCDFYEKF---DAVGREAPLAPGVYSITKLKE 62
G D R + S+ DR + E VCD+Y D A L V + ++ E
Sbjct: 151 GSAADARSAVMDELESIEDRLEDLEEKNVCDYYRNNLTQDTDDFFAWLFDDVRTPDEIYE 210
Query: 63 MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNI 119
+ C Y L ++ I +VV +YH+LLD I + L R + VFDEAHN+
Sbjct: 211 YAEQREFCGYELLKEGIEGVDLVVCNYHHLLDSTIREQFFRWLGRDPEDVIAVFDEAHNV 270
Query: 120 DNVCVDSLSVRINRRTIEKAVGNI 143
++ + + + RT + A+ +
Sbjct: 271 EDAAREHATRTCSERTFDSALDEL 294
>gi|67623207|ref|XP_667886.1| helicase [Cryptosporidium hominis TU502]
gi|54659060|gb|EAL37657.1| helicase, belonging to UvrD family [Cryptosporidium hominis]
Length = 1100
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 579 YLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQ 638
+L +E R++ S + G ++ D +PDG++ FF SY ++ V W DQG+I+ ++
Sbjct: 602 HLIGSYEARNNPSYFSSLGSVVFDCVKRIPDGILLFFGSYSLMDQAVKHWTDQGLIERIK 661
Query: 639 KRKLLFIETQDALDSRSV 656
K +FIE +++ + SV
Sbjct: 662 AFKSVFIEPRNSFELGSV 679
Score = 44.3 bits (103), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
+I+ V FPY+ Y Q YM ++ +L K H LLE P+GTGKT LL+ +A+
Sbjct: 9 LIEGYSVPFPYD-AYKCQINYMQKILYSLKYKKHALLESPTGTGKTLCLLASTLAF 63
Score = 39.7 bits (91), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 69 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 128
CP++ R+ +V+ Y+YLLD + +L ++V++ DEAHN+++V ++ S
Sbjct: 252 FCPFYATREIESVCNVVLLPYNYLLDSITRQNLKIDL-NNTVLILDEAHNVESVSEEAYS 310
Query: 129 V---RINRRTIEKAVGNI--QTLEGTLKEMKEAD 157
I+ +KA+ N+ T G L+E KE+D
Sbjct: 311 FDLRDIDLALSQKAIQNVLEATKLGLLQE-KESD 343
Score = 39.7 bits (91), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 724 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLS 783
CP++ R+ +V+ Y+YLLD + +L ++V++ DEAHN+++V ++ S
Sbjct: 252 FCPFYATREIESVCNVVLLPYNYLLDSITRQNLKIDL-NNTVLILDEAHNVESVSEEAYS 310
Query: 784 V---RINRRTIEKAVGNI--QTLEGTLKEMKEAD 812
I+ +KA+ N+ T G L+E KE+D
Sbjct: 311 FDLRDIDLALSQKAIQNVLEATKLGLLQE-KESD 343
>gi|299471115|emb|CBN78973.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 572
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
V I +L + ++ CPY+L R A++V+ Y+YLLDP + + ++VV+F
Sbjct: 172 VPDIEELVSLAKKHEFCPYYLGRGHAPRAELVLMPYNYLLDPGTRRGIKINWS-NAVVIF 230
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKA 139
DEAHN+++V D+ S + I A
Sbjct: 231 DEAHNLESVASDASSFELTSAQIAGA 256
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
V I +L + ++ CPY+L R A++V+ Y+YLLDP + + ++VV+F
Sbjct: 172 VPDIEELVSLAKKHEFCPYYLGRGHAPRAELVLMPYNYLLDPGTRRGIKINWS-NAVVIF 230
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKA 794
DEAHN+++V D+ S + I A
Sbjct: 231 DEAHNLESVASDASSFELTSAQIAGA 256
>gi|145512032|ref|XP_001441938.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124409199|emb|CAK74541.1| unnamed protein product [Paramecium tetraurelia]
Length = 927
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 18/119 (15%)
Query: 433 VFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTK 492
++FP++ Y Q YM + ++LD K + LLE P+GTGKT SLL + +++ H + K
Sbjct: 55 IYFPHK-PYDVQLKYMESVVQSLDRKHNALLESPTGTGKTLSLLCASLGWLSKHRKEQQK 113
Query: 493 --------LLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEF 543
++Y SRT ++++V +EL + + N++ VL SR C+ +F
Sbjct: 114 ANNPTKLRIIYASRTHAQLKQVAQELKKTV-------YKPNVS--VLGSRDQYCLRGDF 163
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
+ ++ + K+ G + +CPY+ RQ + A I++ Y+YLL+ + V+ + +S+++F
Sbjct: 203 INNLEEAKQFGYKNKICPYYFERQRMDEADIILLPYNYLLEKDFQDYVNID---NSILIF 259
Query: 114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEA----DSAKLREEYARLV 169
DEAHN+ + + S I + I +A + LE + E++ + K++ A+LV
Sbjct: 260 DEAHNVQSTAEEGSSFFITQNIIIEAEKD---LEKWIDELETVPIFYEQLKVKLNQAKLV 316
Query: 170 EGLRDAQS 177
L++ +S
Sbjct: 317 YELKEYRS 324
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
+ ++ + K+ G + +CPY+ RQ + A I++ Y+YLL+ + V+ + +S+++F
Sbjct: 203 INNLEEAKQFGYKNKICPYYFERQRMDEADIILLPYNYLLEKDFQDYVNID---NSILIF 259
Query: 769 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEA----DSAKLREEYARLV 824
DEAHN+ + + S I + I +A + LE + E++ + K++ A+LV
Sbjct: 260 DEAHNVQSTAEEGSSFFITQNIIIEAEKD---LEKWIDELETVPIFYEQLKVKLNQAKLV 316
Query: 825 EGLRDAQS 832
L++ +S
Sbjct: 317 YELKEYRS 324
>gi|448287374|ref|ZP_21478586.1| DNA helicase, rad3 [Halogeometricum borinquense DSM 11551]
gi|445572254|gb|ELY26795.1| DNA helicase, rad3 [Halogeometricum borinquense DSM 11551]
Length = 718
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 69 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVD 125
LC Y L ++ + +VV +YH+LLDP I + L R + VFDEAHNI++ D
Sbjct: 208 LCGYELLKEGMEEVDLVVCNYHHLLDPNIREQFFRWLNREPEDVITVFDEAHNIESAARD 267
Query: 126 SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAK 160
S + T+E+A+ ++ + + ADSA+
Sbjct: 268 HASRALTENTLEQALNELEDTDDS-----RADSAE 297
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 724 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVD 780
LC Y L ++ + +VV +YH+LLDP I + L R + VFDEAHNI++ D
Sbjct: 208 LCGYELLKEGMEEVDLVVCNYHHLLDPNIREQFFRWLNREPEDVITVFDEAHNIESAARD 267
Query: 781 SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAK 815
S + T+E+A+ ++ + + ADSA+
Sbjct: 268 HASRALTENTLEQALNELEDTDDS-----RADSAE 297
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
FFPY+ YP Q M + +AL+A+ L+E GTGKT S L V Y
Sbjct: 3 FFPYDRPYPNQGEAMDGIAEALEAERDVLVEGAPGTGKTLSALVPAVEY 51
>gi|327284022|ref|XP_003226738.1| PREDICTED: regulator of telomere elongation helicase 1-like [Anolis
carolinensis]
Length = 1142
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 34 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
C FY + E L + + L + G + +CPY+L+R A I+ Y+YLL
Sbjct: 171 TCHFYNNVEEKSTEKELINPILDVEDLVKSGNKHRVCPYYLSRTLKQQADIIFMPYNYLL 230
Query: 94 DPKIANVVSKELARSSVVVFDEAHNIDNVC 123
D K + +L + +VV+ DEAHN++ C
Sbjct: 231 DSKSRRAHNLDL-KGTVVILDEAHNVEKQC 259
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 689 VCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
C FY + E L + + L + G + +CPY+L+R A I+ Y+YLL
Sbjct: 171 TCHFYNNVEEKSTEKELINPILDVEDLVKSGNKHRVCPYYLSRTLKQQADIIFMPYNYLL 230
Query: 749 DPKIANVVSKELARSSVVVFDEAHNIDNVC 778
D K + +L + +VV+ DEAHN++ C
Sbjct: 231 DSKSRRAHNLDL-KGTVVILDEAHNVEKQC 259
Score = 43.5 bits (101), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
Q+ V I PDG + L S +E R + + G+ + ++ ++P G++ FF
Sbjct: 485 QVWVGILPKGPDGGL--------LSSTYEKRFSPECLSSLGKTIGNLVKIIPHGLLVFFP 536
Query: 617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
SY ++ + W D ++ ++ K +F+E ++
Sbjct: 537 SYPVMDKSLEYWKDHRFVEKIEAVKPIFVEPRN 569
>gi|313124967|ref|YP_004035231.1| DNA helicase, rad3 [Halogeometricum borinquense DSM 11551]
gi|312291332|gb|ADQ65792.1| DNA helicase, Rad3 [Halogeometricum borinquense DSM 11551]
Length = 725
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 69 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVD 125
LC Y L ++ + +VV +YH+LLDP I + L R + VFDEAHNI++ D
Sbjct: 215 LCGYELLKEGMEEVDLVVCNYHHLLDPNIREQFFRWLNREPEDVITVFDEAHNIESAARD 274
Query: 126 SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAK 160
S + T+E+A+ ++ + + ADSA+
Sbjct: 275 HASRALTENTLEQALNELEDTDDS-----RADSAE 304
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 724 LCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVD 780
LC Y L ++ + +VV +YH+LLDP I + L R + VFDEAHNI++ D
Sbjct: 215 LCGYELLKEGMEEVDLVVCNYHHLLDPNIREQFFRWLNREPEDVITVFDEAHNIESAARD 274
Query: 781 SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAK 815
S + T+E+A+ ++ + + ADSA+
Sbjct: 275 HASRALTENTLEQALNELEDTDDS-----RADSAE 304
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
FFPY+ YP Q M + +AL+A+ L+E GTGKT S L V Y
Sbjct: 10 FFPYDRPYPNQGEAMDGIAEALEAERDVLVEGAPGTGKTLSALVPAVEY 58
>gi|354609797|ref|ZP_09027753.1| Helicase-like, DEXD box c2 type [Halobacterium sp. DL1]
gi|353194617|gb|EHB60119.1| Helicase-like, DEXD box c2 type [Halobacterium sp. DL1]
Length = 738
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 66 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNV 122
E GLC Y L + + + V +YH+LLDP I + L R VVVFDEAHNI++
Sbjct: 215 EAGLCGYELLKDGMEGVDLAVCNYHHLLDPGIRAQFFRWLGRDPEDVVVVFDEAHNIEDA 274
Query: 123 CVDSLSVRINRRTIEKAVGNIQTL 146
D + + T++ A+ ++ +
Sbjct: 275 ARDHAAQTLTENTLDSALSELEEV 298
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 721 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNV 777
E GLC Y L + + + V +YH+LLDP I + L R VVVFDEAHNI++
Sbjct: 215 EAGLCGYELLKDGMEGVDLAVCNYHHLLDPGIRAQFFRWLGRDPEDVVVVFDEAHNIEDA 274
Query: 778 CVDSLSVRINRRTIEKAVGNIQTL 801
D + + T++ A+ ++ +
Sbjct: 275 ARDHAAQTLTENTLDSALSELEEV 298
>gi|312076541|ref|XP_003140907.1| hypothetical protein LOAG_05322 [Loa loa]
Length = 704
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 21/154 (13%)
Query: 69 LCPYF-LARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSL 127
LCPYF AR I A I+ + YL+DP I S +++VV+ DEAHN+++VC +++
Sbjct: 75 LCPYFSTARVLIDDADIIFCPFSYLIDP-IIRANSGLSLKNTVVILDEAHNVEDVCREAV 133
Query: 128 SVRINRRTIEKAVGNIQTLEGTL-KEMKEADSAKLREEYARLVEGLRDAQSARETDVVLA 186
S R + A ++ L KE+ + D+ + EE L+E D+++ R + +
Sbjct: 134 SFTFMERELVGATADLYQKAAELEKELTKVDAKVVAEE--GLIE-TEDSRAGRYKECL-- 188
Query: 187 NPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYL 220
EV+ G+ +T + FL + +++
Sbjct: 189 ----------EVMKGHFKTV---INFLNKILDWF 209
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 9/113 (7%)
Query: 724 LCPYF-LARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSL 782
LCPYF AR I A I+ + YL+DP I S +++VV+ DEAHN+++VC +++
Sbjct: 75 LCPYFSTARVLIDDADIIFCPFSYLIDP-IIRANSGLSLKNTVVILDEAHNVEDVCREAV 133
Query: 783 SVRINRRTIEKAVGNIQTLEGTL-KEMKEADSAKLREEYARLVEGLRDAQSAR 834
S R + A ++ L KE+ + D+ + E EGL + + +R
Sbjct: 134 SFTFMERELVGATADLYQKAAELEKELTKVDAKVVAE------EGLIETEDSR 180
>gi|448330597|ref|ZP_21519877.1| helicase c2 [Natrinema versiforme JCM 10478]
gi|445611475|gb|ELY65227.1| helicase c2 [Natrinema versiforme JCM 10478]
Length = 716
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 108/254 (42%), Gaps = 39/254 (15%)
Query: 631 QGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPV 689
+ ++D Q R+ L ++ L + S++ DG D R + + +R + E+ V
Sbjct: 114 RAVVDAEQDREQLERRQRELL---AESQDGDGSAADARSAVMDELEDIEERLEDLEDQNV 170
Query: 690 CDFYEK---------FDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIV 740
CD+Y F + ++ +Y + ++ LC Y L ++ I +V
Sbjct: 171 CDYYRNNLTQDTDDFFGWLFKDVRTPDDIYDYAEGQQ------LCGYELLKEGIEGVDLV 224
Query: 741 VYSYHYLLDPKIANVVSKELARSS---VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN 797
V +YH+LLD I + L R + VFDEAHN+++ + + + RT + A+
Sbjct: 225 VCNYHHLLDSTIREQFFRWLGRDPEDVIAVFDEAHNVEDAAREHATRTCSERTFDSALDE 284
Query: 798 IQTLEGTLKEMKEADSAKLREEYAR-LVE--------GLRDAQSARETDVVLANPVLPD- 847
+ + E D+A + + R LVE G R+A DV +AN D
Sbjct: 285 LADSDDPRSE----DAANVLSAFHRALVETYEDSFGFGNREAIGENWEDVSIANEGRKDD 340
Query: 848 ---EILQGKTDYGI 858
E LQ + GI
Sbjct: 341 LTLEFLQRYSGSGI 354
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 32/220 (14%)
Query: 2 SKERDGKIVDGRCHSLTS-SSVRDRHKAGENIPVCDFYEK---------FDAVGREAPLA 51
S++ DG D R + + +R + E+ VCD+Y F + ++
Sbjct: 137 SQDGDGSAADARSAVMDELEDIEERLEDLEDQNVCDYYRNNLTQDTDDFFGWLFKDVRTP 196
Query: 52 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS-- 109
+Y + ++ LC Y L ++ I +VV +YH+LLD I + L R
Sbjct: 197 DDIYDYAEGQQ------LCGYELLKEGIEGVDLVVCNYHHLLDSTIREQFFRWLGRDPED 250
Query: 110 -VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYAR- 167
+ VFDEAHN+++ + + + RT + A+ + + E D+A + + R
Sbjct: 251 VIAVFDEAHNVEDAAREHATRTCSERTFDSALDELADSDDPRSE----DAANVLSAFHRA 306
Query: 168 LVE--------GLRDAQSARETDVVLANPVLPDEILQEVV 199
LVE G R+A DV +AN D++ E +
Sbjct: 307 LVETYEDSFGFGNREAIGENWEDVSIANEGRKDDLTLEFL 346
>gi|300706292|ref|XP_002995425.1| hypothetical protein NCER_101677 [Nosema ceranae BRL01]
gi|239604524|gb|EEQ81754.1| hypothetical protein NCER_101677 [Nosema ceranae BRL01]
Length = 600
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 21/123 (17%)
Query: 440 IYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN------------AHP 487
+Y Q ++ + KK +D + P+GTGKT SLL ++ Y+
Sbjct: 6 LYDIQKKFITDCKKVIDNSSVGIFSSPTGTGKTLSLLLSVLEYITELEEDDVLLENLVEN 65
Query: 488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
TK+ +CSRT ++++ + E L E+ ++L SRK CI+ E + ++
Sbjct: 66 FSRTKIYFCSRTHSQLKQCLHEFKNL---------EVKTNSVILGSRKIYCINREIDNKE 116
Query: 548 DIS 550
DI+
Sbjct: 117 DIN 119
Score = 41.2 bits (95), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 20/141 (14%)
Query: 653 SRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSI 712
+R + + D V+ +C L C +Y ++ G+Y I
Sbjct: 109 NREIDNKEDINKVNQKCKDLIKQDN------------CKYY-------KQDMFVSGIYDI 149
Query: 713 TKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAH 772
+L + GR+ CPYF +++ ++V Y+ L + + ++ L S V+V DEAH
Sbjct: 150 EQLVKEGRKHKACPYFFSKKYFKKCELVFLPYNLLFNEENRKNININLINSIVIV-DEAH 208
Query: 773 NIDNVCVDSLSVRINRRTIEK 793
NI + + ++ I+ +EK
Sbjct: 209 NIIDTVNNFNTITIHYEIMEK 229
Score = 40.4 bits (93), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 46 REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL 105
++ G+Y I +L + GR+ CPYF +++ ++V Y+ L + + ++ L
Sbjct: 138 KQDMFVSGIYDIEQLVKEGRKHKACPYFFSKKYFKKCELVFLPYNLLFNEENRKNININL 197
Query: 106 ARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEK 138
S V+V DEAHNI + + ++ I+ +EK
Sbjct: 198 INSIVIV-DEAHNIIDTVNNFNTITIHYEIMEK 229
>gi|312091190|ref|XP_003146892.1| hypothetical protein LOAG_11323 [Loa loa]
Length = 438
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 18/145 (12%)
Query: 1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK-----FDAVGREAPLAPGVY 55
V KE + C +L S +H+ P + YEK D + L P +
Sbjct: 132 VMKENSSHVKSLMCRNLIS-----KHQC----PFYNSYEKADPSTLDLLYNGNGLVPDIE 182
Query: 56 SITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDE 115
+ + + R CPYF R +A +++ Y+Y++DP + + + +L + ++V+FDE
Sbjct: 183 EVINISQKHR---YCPYFRNRTVYENADLILLPYNYIVDPSLRHKHNIQL-KGNIVIFDE 238
Query: 116 AHNIDNVCVDSLSVRINRRTIEKAV 140
AHN++++C +S SV + I +
Sbjct: 239 AHNLESICEESTSVSFSTTQISACI 263
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 18/145 (12%)
Query: 656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEK-----FDAVGREAPLAPGVY 710
V KE + C +L S +H+ P + YEK D + L P +
Sbjct: 132 VMKENSSHVKSLMCRNLIS-----KHQC----PFYNSYEKADPSTLDLLYNGNGLVPDIE 182
Query: 711 SITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDE 770
+ + + R CPYF R +A +++ Y+Y++DP + + + +L + ++V+FDE
Sbjct: 183 EVINISQKHR---YCPYFRNRTVYENADLILLPYNYIVDPSLRHKHNIQL-KGNIVIFDE 238
Query: 771 AHNIDNVCVDSLSVRINRRTIEKAV 795
AHN++++C +S SV + I +
Sbjct: 239 AHNLESICEESTSVSFSTTQISACI 263
Score = 43.1 bits (100), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 29/128 (22%)
Query: 433 VFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVT- 491
V FP+E Y Q +M ++ +AL + LE P+GTGKT LL +A++ + ++
Sbjct: 11 VEFPFE-PYECQIKFMEKVVEALWTGQNAALESPTGTGKTLCLLCAAIAFLKDYKSRISQ 69
Query: 492 -------------------KLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLS 532
K+LY SRT ++ +V+ EL + IK + L+
Sbjct: 70 MDSIMKYKVTVPALLSHNPKILYASRTHSQLAQVISELNKTTYKDIK--------TVTLA 121
Query: 533 SRKNLCIH 540
SR LCI+
Sbjct: 122 SRDILCIN 129
>gi|448526082|ref|ZP_21619700.1| DEAD_2 domain protein [Halorubrum distributum JCM 10118]
gi|445699282|gb|ELZ51313.1| DEAD_2 domain protein [Halorubrum distributum JCM 10118]
Length = 736
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 14/117 (11%)
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHN 118
E E GLC Y L ++ + +VV +YH+LLDP I + + R + VFDEAHN
Sbjct: 207 EYADERGLCGYELLKEGMEGVDLVVCNYHHLLDPNIREQFFRWIDRDPSEIITVFDEAHN 266
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDA 175
I++ D + RT+ + TL+ L E+ ++D ++ E ++ RDA
Sbjct: 267 IEDAARDHAT-----RTLTE-----NTLDAALDELADSDDSRA-EPAENVLRAFRDA 312
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 14/117 (11%)
Query: 717 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHN 773
E E GLC Y L ++ + +VV +YH+LLDP I + + R + VFDEAHN
Sbjct: 207 EYADERGLCGYELLKEGMEGVDLVVCNYHHLLDPNIREQFFRWIDRDPSEIITVFDEAHN 266
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDA 830
I++ D + RT+ + TL+ L E+ ++D ++ E ++ RDA
Sbjct: 267 IEDAARDHAT-----RTLTE-----NTLDAALDELADSDDSRA-EPAENVLRAFRDA 312
>gi|448514238|ref|ZP_21616990.1| DEAD_2 domain protein [Halorubrum distributum JCM 9100]
gi|445692906|gb|ELZ45075.1| DEAD_2 domain protein [Halorubrum distributum JCM 9100]
Length = 736
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 14/117 (11%)
Query: 62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHN 118
E E GLC Y L ++ + +VV +YH+LLDP I + + R + VFDEAHN
Sbjct: 207 EYADERGLCGYELLKEGMEGVDLVVCNYHHLLDPNIREQFFRWIDRDPSEIITVFDEAHN 266
Query: 119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDA 175
I++ D + RT+ + TL+ L E+ ++D ++ E ++ RDA
Sbjct: 267 IEDAARDHAT-----RTLTE-----NTLDAALDELADSDDSRA-EPAENVLRAFRDA 312
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 14/117 (11%)
Query: 717 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS---VVVFDEAHN 773
E E GLC Y L ++ + +VV +YH+LLDP I + + R + VFDEAHN
Sbjct: 207 EYADERGLCGYELLKEGMEGVDLVVCNYHHLLDPNIREQFFRWIDRDPSEIITVFDEAHN 266
Query: 774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDA 830
I++ D + RT+ + TL+ L E+ ++D ++ E ++ RDA
Sbjct: 267 IEDAARDHAT-----RTLTE-----NTLDAALDELADSDDSRA-EPAENVLRAFRDA 312
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,654,477,200
Number of Sequences: 23463169
Number of extensions: 562240017
Number of successful extensions: 1571009
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 687
Number of HSP's that attempted gapping in prelim test: 1557287
Number of HSP's gapped (non-prelim): 11108
length of query: 941
length of database: 8,064,228,071
effective HSP length: 152
effective length of query: 789
effective length of database: 8,792,793,679
effective search space: 6937514212731
effective search space used: 6937514212731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 82 (36.2 bits)