Query psy11433
Match_columns 941
No_of_seqs 471 out of 2750
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 18:20:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11433.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11433hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a15_A XPD helicase, ATP-depen 100.0 3.7E-48 1.2E-52 466.4 11.3 132 9-146 105-243 (620)
2 3crv_A XPD/RAD3 related DNA he 100.0 7.6E-37 2.6E-41 364.0 19.0 104 34-146 104-211 (551)
3 4a15_A XPD helicase, ATP-depen 100.0 8.4E-34 2.9E-38 341.5 15.4 237 439-802 3-244 (620)
4 2vl7_A XPD; helicase, unknown 100.0 1.5E-30 5.2E-35 309.0 11.2 90 56-146 119-213 (540)
5 3crv_A XPD/RAD3 related DNA he 99.9 2.9E-26 9.8E-31 273.0 16.6 205 439-801 3-211 (551)
6 2vl7_A XPD; helicase, unknown 99.9 2.6E-26 8.8E-31 272.7 13.2 226 439-829 7-237 (540)
7 2pl3_A Probable ATP-dependent 98.8 8.8E-09 3E-13 108.2 9.1 47 435-485 43-89 (236)
8 1fuu_A Yeast initiation factor 98.6 3.5E-08 1.2E-12 110.5 8.2 72 435-511 39-110 (394)
9 1hv8_A Putative ATP-dependent 98.6 6.2E-08 2.1E-12 107.1 8.8 73 435-512 24-96 (367)
10 2z0m_A 337AA long hypothetical 98.6 1.1E-07 3.6E-12 104.1 9.8 68 434-512 11-78 (337)
11 3dkp_A Probable ATP-dependent 98.4 8.5E-07 2.9E-11 93.4 9.6 75 435-513 47-121 (245)
12 1wp9_A ATP-dependent RNA helic 98.3 6.7E-07 2.3E-11 101.9 9.1 64 439-510 9-72 (494)
13 3fe2_A Probable ATP-dependent 98.3 1.4E-06 4.7E-11 91.9 10.2 77 435-515 47-127 (242)
14 1vec_A ATP-dependent RNA helic 98.3 1.4E-06 4.7E-11 89.0 9.1 74 435-513 21-94 (206)
15 1wrb_A DJVLGB; RNA helicase, D 98.3 3.5E-06 1.2E-10 89.2 12.1 75 435-513 41-123 (253)
16 3iuy_A Probable ATP-dependent 98.3 1.7E-06 5.7E-11 90.1 9.0 75 435-513 38-117 (228)
17 1t6n_A Probable ATP-dependent 98.3 1.6E-06 5.4E-11 89.7 8.6 74 435-513 32-105 (220)
18 1q0u_A Bstdead; DEAD protein, 98.2 1.5E-06 5.1E-11 90.0 8.2 75 435-514 22-96 (219)
19 3ber_A Probable ATP-dependent 98.2 3.7E-06 1.3E-10 89.3 11.2 75 435-514 61-135 (249)
20 1qde_A EIF4A, translation init 98.2 1.9E-06 6.5E-11 89.2 8.5 74 435-513 32-105 (224)
21 2oxc_A Probable ATP-dependent 98.2 2.7E-06 9.4E-11 88.9 9.0 74 435-513 42-115 (230)
22 2gxq_A Heat resistant RNA depe 98.2 3.9E-06 1.3E-10 85.5 9.1 75 435-513 19-95 (207)
23 3bor_A Human initiation factor 98.2 2.4E-06 8.2E-11 89.8 7.4 74 435-513 48-121 (237)
24 3ly5_A ATP-dependent RNA helic 98.1 4.1E-06 1.4E-10 89.7 8.9 75 435-513 72-149 (262)
25 3sqw_A ATP-dependent RNA helic 98.1 4.2E-06 1.4E-10 99.8 8.1 80 434-515 38-120 (579)
26 2db3_A ATP-dependent RNA helic 98.0 9.9E-06 3.4E-10 93.1 9.9 76 435-514 74-153 (434)
27 2i4i_A ATP-dependent RNA helic 98.0 1.2E-05 4E-10 90.8 9.8 76 435-514 33-125 (417)
28 3fmo_B ATP-dependent RNA helic 98.0 9.5E-06 3.2E-10 88.8 8.7 74 435-513 110-185 (300)
29 1s2m_A Putative ATP-dependent 98.0 1.7E-05 5.8E-10 89.1 10.5 75 435-514 39-113 (400)
30 1xti_A Probable ATP-dependent 98.0 7.6E-06 2.6E-10 91.4 7.6 75 435-514 26-100 (391)
31 3i5x_A ATP-dependent RNA helic 98.0 8.1E-06 2.8E-10 96.6 8.2 79 435-515 90-171 (563)
32 3pey_A ATP-dependent RNA helic 98.0 9.2E-06 3.1E-10 90.5 7.9 76 435-513 23-98 (395)
33 3fht_A ATP-dependent RNA helic 97.9 1.2E-05 4.1E-10 90.4 7.9 77 435-514 43-119 (412)
34 2j0s_A ATP-dependent RNA helic 97.9 1.8E-05 6.2E-10 89.3 9.4 74 435-513 55-128 (410)
35 3eiq_A Eukaryotic initiation f 97.9 1.7E-05 6E-10 89.2 8.5 74 435-513 58-131 (414)
36 3oiy_A Reverse gyrase helicase 97.9 1.7E-05 5.8E-10 90.0 8.1 71 434-513 17-87 (414)
37 2v1x_A ATP-dependent DNA helic 97.8 2.1E-05 7.3E-10 94.0 7.8 70 433-513 38-107 (591)
38 3tbk_A RIG-I helicase domain; 97.8 4.2E-05 1.4E-09 89.4 9.7 73 439-515 4-77 (555)
39 3fmp_B ATP-dependent RNA helic 97.8 2E-05 7E-10 91.3 6.2 77 435-514 110-186 (479)
40 3b6e_A Interferon-induced heli 97.7 2.9E-05 9.9E-10 79.2 6.5 71 439-513 33-106 (216)
41 1gm5_A RECG; helicase, replica 97.7 9.1E-05 3.1E-09 91.2 10.8 76 434-514 364-441 (780)
42 4a2p_A RIG-I, retinoic acid in 97.6 8.1E-05 2.8E-09 87.2 9.0 72 439-514 7-79 (556)
43 2ykg_A Probable ATP-dependent 97.6 8.2E-05 2.8E-09 90.2 9.3 77 434-514 8-85 (696)
44 1oyw_A RECQ helicase, ATP-depe 97.6 8.3E-05 2.8E-09 87.6 8.2 70 433-513 19-88 (523)
45 1rif_A DAR protein, DNA helica 97.5 0.0002 6.8E-09 77.1 9.2 68 439-513 113-180 (282)
46 4a2q_A RIG-I, retinoic acid in 97.5 0.00022 7.6E-09 88.2 10.7 76 435-514 244-320 (797)
47 2xgj_A ATP-dependent RNA helic 97.4 0.00021 7.1E-09 90.5 9.4 73 433-514 81-153 (1010)
48 3fho_A ATP-dependent RNA helic 97.4 5E-05 1.7E-09 89.1 3.4 75 436-513 138-212 (508)
49 4a4z_A Antiviral helicase SKI2 97.4 0.00033 1.1E-08 88.6 10.2 72 433-513 34-105 (997)
50 3l9o_A ATP-dependent RNA helic 97.4 0.00024 8.2E-09 90.8 9.0 73 433-514 179-251 (1108)
51 2eyq_A TRCF, transcription-rep 97.4 0.00031 1.1E-08 90.2 9.8 76 433-513 598-675 (1151)
52 2oca_A DAR protein, ATP-depend 97.3 0.00026 9E-09 82.5 8.2 68 439-513 113-180 (510)
53 4gl2_A Interferon-induced heli 97.2 0.00016 5.6E-09 87.6 4.6 72 439-514 7-81 (699)
54 4a2w_A RIG-I, retinoic acid in 97.2 0.00037 1.3E-08 87.7 8.0 75 437-515 246-321 (936)
55 2va8_A SSO2462, SKI2-type heli 97.2 0.00035 1.2E-08 85.2 7.4 73 435-513 26-98 (715)
56 2zj8_A DNA helicase, putative 97.2 0.00025 8.6E-09 86.6 5.9 73 435-513 19-91 (720)
57 4f92_B U5 small nuclear ribonu 97.1 0.00089 3.1E-08 88.9 10.5 72 437-513 924-995 (1724)
58 2p6r_A Afuhel308 helicase; pro 97.1 0.00029 9.9E-09 85.8 5.0 71 435-513 21-91 (702)
59 4ddu_A Reverse gyrase; topoiso 97.1 0.00061 2.1E-08 87.1 8.0 71 434-513 74-144 (1104)
60 4f92_B U5 small nuclear ribonu 97.0 0.0011 3.8E-08 88.1 9.8 78 434-514 73-158 (1724)
61 3h1t_A Type I site-specific re 97.0 0.0006 2E-08 81.2 6.7 74 439-512 178-258 (590)
62 1gku_B Reverse gyrase, TOP-RG; 97.0 0.0009 3.1E-08 85.2 8.6 72 434-515 53-124 (1054)
63 2fz4_A DNA repair protein RAD2 97.0 0.0008 2.7E-08 70.8 6.7 66 435-512 90-155 (237)
64 2fwr_A DNA repair protein RAD2 96.9 0.00094 3.2E-08 77.0 7.2 66 435-512 90-155 (472)
65 1tf5_A Preprotein translocase 96.8 0.0025 8.6E-08 78.0 9.9 68 439-516 83-150 (844)
66 2z83_A Helicase/nucleoside tri 96.7 0.00059 2E-08 79.0 2.9 57 452-511 15-71 (459)
67 2w00_A HSDR, R.ECOR124I; ATP-b 96.7 0.0022 7.7E-08 81.1 8.0 73 439-513 271-353 (1038)
68 1yks_A Genome polyprotein [con 96.6 0.00075 2.6E-08 77.7 3.0 56 455-513 5-60 (440)
69 2wv9_A Flavivirin protease NS2 96.6 0.00024 8.3E-09 86.1 -1.5 72 438-512 214-292 (673)
70 2fsf_A Preprotein translocase 96.6 0.0036 1.2E-07 76.5 8.7 68 440-517 75-142 (853)
71 2jlq_A Serine protease subunit 96.5 0.00051 1.7E-08 79.3 0.8 53 456-511 17-69 (451)
72 2whx_A Serine protease/ntpase/ 96.4 0.00067 2.3E-08 81.5 1.1 67 438-511 170-236 (618)
73 1z63_A Helicase of the SNF2/RA 96.3 0.0092 3.2E-07 69.2 10.0 72 439-513 37-108 (500)
74 3llm_A ATP-dependent RNA helic 96.3 0.0063 2.2E-07 63.5 7.8 68 440-511 62-130 (235)
75 1nkt_A Preprotein translocase 96.3 0.007 2.4E-07 74.3 9.1 69 439-517 111-179 (922)
76 2v6i_A RNA helicase; membrane, 96.1 0.0036 1.2E-07 71.8 4.9 51 458-511 2-52 (431)
77 4b3f_X DNA-binding protein smu 95.6 0.017 6E-07 69.5 8.2 66 440-512 190-255 (646)
78 3upu_A ATP-dependent DNA helic 95.5 0.028 9.5E-07 64.9 9.1 66 435-503 21-87 (459)
79 2ipc_A Preprotein translocase 95.4 0.021 7.2E-07 70.1 7.8 68 439-516 79-146 (997)
80 3dmq_A RNA polymerase-associat 94.8 0.052 1.8E-06 68.6 9.1 69 439-512 153-221 (968)
81 3mwy_W Chromo domain-containin 94.5 0.062 2.1E-06 66.4 8.9 73 439-513 236-308 (800)
82 1z3i_X Similar to RAD54-like; 94.5 0.076 2.6E-06 64.0 9.4 75 439-514 55-137 (644)
83 2gk6_A Regulator of nonsense t 93.8 0.1 3.4E-06 62.7 8.3 67 439-512 180-246 (624)
84 3jux_A Protein translocase sub 93.8 0.17 5.6E-06 61.3 9.9 68 440-517 76-143 (822)
85 3rc3_A ATP-dependent RNA helic 93.1 0.062 2.1E-06 65.1 4.9 49 457-513 154-202 (677)
86 2xau_A PRE-mRNA-splicing facto 91.8 0.18 6.2E-06 62.0 6.8 66 440-510 94-160 (773)
87 2xzl_A ATP-dependent helicase 91.7 0.22 7.6E-06 61.5 7.4 67 439-512 360-426 (802)
88 3o8b_A HCV NS3 protease/helica 91.7 0.091 3.1E-06 63.3 3.9 55 452-513 226-280 (666)
89 2wjy_A Regulator of nonsense t 91.2 0.31 1E-05 60.2 8.0 66 439-511 356-421 (800)
90 1w36_D RECD, exodeoxyribonucle 91.1 0.34 1.2E-05 57.9 8.0 68 441-514 151-220 (608)
91 3lfu_A DNA helicase II; SF1 he 90.0 0.41 1.4E-05 57.1 7.5 68 440-513 10-77 (647)
92 3n70_A Transport activator; si 88.4 0.32 1.1E-05 46.4 4.0 29 447-475 13-41 (145)
93 3co5_A Putative two-component 88.2 0.28 9.5E-06 46.8 3.4 27 447-473 16-42 (143)
94 1a5t_A Delta prime, HOLB; zinc 88.0 0.41 1.4E-05 52.5 5.1 40 440-479 3-45 (334)
95 3e1s_A Exodeoxyribonuclease V, 88.0 0.75 2.6E-05 54.5 7.6 59 440-506 190-248 (574)
96 2r44_A Uncharacterized protein 87.4 0.28 9.6E-06 53.4 3.3 33 443-475 31-63 (331)
97 3nbx_X ATPase RAVA; AAA+ ATPas 87.0 0.3 1E-05 56.9 3.4 32 443-474 26-57 (500)
98 2w58_A DNAI, primosome compone 86.5 0.72 2.5E-05 46.1 5.5 34 442-475 32-71 (202)
99 1c4o_A DNA nucleotide excision 86.3 1.2 4.1E-05 53.8 8.2 70 436-513 6-76 (664)
100 3b6e_A Interferon-induced heli 84.5 0.25 8.6E-06 49.6 0.9 44 77-120 128-175 (216)
101 1uaa_A REP helicase, protein ( 83.9 1.3 4.3E-05 53.4 6.9 66 440-511 3-68 (673)
102 2pl3_A Probable ATP-dependent 83.4 0.26 9E-06 50.7 0.5 51 70-121 135-185 (236)
103 1jbk_A CLPB protein; beta barr 82.9 0.79 2.7E-05 44.4 3.8 33 444-476 27-61 (195)
104 3hws_A ATP-dependent CLP prote 82.8 0.77 2.6E-05 50.7 4.1 33 443-475 19-68 (363)
105 1iqp_A RFCS; clamp loader, ext 82.6 0.82 2.8E-05 49.0 4.1 36 443-478 29-66 (327)
106 1ofh_A ATP-dependent HSL prote 82.3 0.88 3E-05 48.4 4.2 34 443-476 19-68 (310)
107 2gxq_A Heat resistant RNA depe 82.1 0.41 1.4E-05 47.9 1.4 45 75-121 114-158 (207)
108 4fcw_A Chaperone protein CLPB; 81.9 0.73 2.5E-05 49.3 3.3 36 443-478 21-67 (311)
109 2chg_A Replication factor C sm 81.9 1 3.5E-05 44.7 4.2 32 444-475 22-55 (226)
110 1njg_A DNA polymerase III subu 81.8 0.97 3.3E-05 45.4 4.1 32 444-475 28-62 (250)
111 3te6_A Regulatory protein SIR3 81.4 0.86 3E-05 49.9 3.7 39 441-479 25-66 (318)
112 1qde_A EIF4A, translation init 81.3 0.35 1.2E-05 49.2 0.5 43 77-121 127-169 (224)
113 2bjv_A PSP operon transcriptio 81.1 1 3.4E-05 47.3 4.0 28 447-474 18-45 (265)
114 2p65_A Hypothetical protein PF 81.1 0.84 2.9E-05 44.2 3.2 34 444-477 27-62 (187)
115 3ec2_A DNA replication protein 80.7 2.1 7.1E-05 41.9 6.0 35 441-475 16-55 (180)
116 1wp9_A ATP-dependent RNA helic 80.7 0.57 1.9E-05 52.5 2.0 42 77-120 97-138 (494)
117 1pjr_A PCRA; DNA repair, DNA r 79.8 2.7 9.1E-05 51.2 7.7 67 440-512 12-78 (724)
118 1sxj_D Activator 1 41 kDa subu 79.8 0.56 1.9E-05 51.0 1.6 36 443-478 41-78 (353)
119 3cpe_A Terminase, DNA packagin 79.6 4.3 0.00015 48.1 9.2 74 435-515 160-233 (592)
120 1sxj_C Activator 1 40 kDa subu 79.4 1.3 4.3E-05 48.5 4.3 37 443-479 29-67 (340)
121 2qgz_A Helicase loader, putati 79.0 3.9 0.00013 44.2 8.0 37 443-479 132-173 (308)
122 2o0j_A Terminase, DNA packagin 78.9 5.2 0.00018 44.9 9.1 74 436-516 161-234 (385)
123 1vec_A ATP-dependent RNA helic 78.9 0.46 1.6E-05 47.6 0.4 42 78-121 119-160 (206)
124 3pfi_A Holliday junction ATP-d 78.7 1.3 4.3E-05 48.2 3.9 35 443-477 33-74 (338)
125 1wrb_A DJVLGB; RNA helicase, D 78.5 0.59 2E-05 48.7 1.1 45 75-121 144-188 (253)
126 3iuy_A Probable ATP-dependent 78.3 0.54 1.9E-05 48.0 0.8 44 76-121 138-181 (228)
127 2d7d_A Uvrabc system protein B 77.9 3.7 0.00013 49.4 8.1 72 434-513 8-80 (661)
128 3dkp_A Probable ATP-dependent 77.7 0.38 1.3E-05 49.8 -0.7 42 80-121 148-189 (245)
129 3ber_A Probable ATP-dependent 76.8 0.66 2.3E-05 48.5 0.9 46 75-121 155-200 (249)
130 3uk6_A RUVB-like 2; hexameric 76.7 2.4 8.1E-05 46.5 5.5 37 441-477 49-89 (368)
131 3syl_A Protein CBBX; photosynt 76.7 3 0.0001 44.4 6.1 20 459-478 68-87 (309)
132 1hv8_A Putative ATP-dependent 76.5 0.87 3E-05 49.3 1.8 48 71-120 113-160 (367)
133 2z0m_A 337AA long hypothetical 76.4 0.83 2.8E-05 48.9 1.6 49 71-121 95-143 (337)
134 3fe2_A Probable ATP-dependent 76.2 0.96 3.3E-05 46.8 2.0 47 73-121 144-190 (242)
135 3b9p_A CG5977-PA, isoform A; A 75.9 1.5 5.2E-05 46.6 3.5 19 458-476 54-72 (297)
136 1ojl_A Transcriptional regulat 75.8 1.6 5.5E-05 47.2 3.7 27 448-474 15-41 (304)
137 3bos_A Putative DNA replicatio 74.9 3.1 0.00011 41.9 5.5 34 444-477 36-71 (242)
138 2oxc_A Probable ATP-dependent 74.7 0.68 2.3E-05 47.5 0.3 48 72-121 133-180 (230)
139 1jr3_A DNA polymerase III subu 74.3 2.1 7.2E-05 46.8 4.2 36 443-478 20-58 (373)
140 2chq_A Replication factor C sm 74.2 1.3 4.5E-05 47.1 2.5 36 443-478 21-58 (319)
141 1fuu_A Yeast initiation factor 73.9 1.1 3.7E-05 49.2 1.8 49 71-121 128-176 (394)
142 1g8p_A Magnesium-chelatase 38 72.9 1.7 5.8E-05 47.2 3.0 19 457-475 44-62 (350)
143 3h4m_A Proteasome-activating n 72.5 2.9 9.8E-05 44.0 4.6 20 457-476 50-69 (285)
144 1hqc_A RUVB; extended AAA-ATPa 72.1 2.2 7.7E-05 45.7 3.7 18 459-476 39-56 (324)
145 1t6n_A Probable ATP-dependent 72.0 0.83 2.9E-05 46.2 0.2 38 81-120 134-171 (220)
146 1rif_A DAR protein, DNA helica 71.6 1.4 4.7E-05 46.8 1.8 36 80-120 203-238 (282)
147 2c9o_A RUVB-like 1; hexameric 71.6 3.7 0.00013 46.9 5.6 36 443-478 44-83 (456)
148 1q0u_A Bstdead; DEAD protein, 71.0 0.79 2.7E-05 46.5 -0.2 39 81-121 126-164 (219)
149 2qz4_A Paraplegin; AAA+, SPG7, 70.8 3.9 0.00013 42.2 5.1 18 459-476 40-57 (262)
150 3ly5_A ATP-dependent RNA helic 70.6 1.5 5.2E-05 46.0 1.9 48 73-121 168-215 (262)
151 1z63_A Helicase of the SNF2/RA 70.3 1.7 5.8E-05 49.9 2.3 59 57-120 102-162 (500)
152 3pvs_A Replication-associated 70.2 2.4 8.2E-05 48.6 3.5 35 443-477 30-69 (447)
153 3cf0_A Transitional endoplasmi 69.9 3 0.0001 44.8 4.1 19 458-476 49-67 (301)
154 3pxi_A Negative regulator of g 69.7 2.5 8.6E-05 51.6 3.8 35 443-477 495-540 (758)
155 3pey_A ATP-dependent RNA helic 68.8 1.2 4E-05 48.8 0.6 40 80-121 120-159 (395)
156 2gno_A DNA polymerase III, gam 68.6 3 0.0001 45.2 3.7 37 443-479 1-39 (305)
157 3d8b_A Fidgetin-like protein 1 68.4 2.8 9.7E-05 46.2 3.5 20 458-477 117-136 (357)
158 3bor_A Human initiation factor 68.4 1.3 4.3E-05 45.8 0.6 38 82-121 150-187 (237)
159 2fz4_A DNA repair protein RAD2 68.0 2.1 7.1E-05 44.5 2.2 36 81-121 171-206 (237)
160 2qby_B CDC6 homolog 3, cell di 67.8 3.3 0.00011 45.4 3.9 20 458-477 45-64 (384)
161 1l8q_A Chromosomal replication 67.8 5.8 0.0002 42.7 5.8 33 444-476 19-55 (324)
162 3pxg_A Negative regulator of g 67.6 2.9 9.9E-05 48.1 3.5 37 443-479 184-222 (468)
163 1um8_A ATP-dependent CLP prote 67.5 3.5 0.00012 45.6 4.1 19 458-476 72-90 (376)
164 1lv7_A FTSH; alpha/beta domain 66.9 5 0.00017 41.6 5.0 18 458-475 45-62 (257)
165 3k1j_A LON protease, ATP-depen 66.9 3.5 0.00012 49.0 4.2 36 443-478 45-80 (604)
166 1s2m_A Putative ATP-dependent 66.5 1.4 4.9E-05 48.6 0.6 42 77-120 135-176 (400)
167 3vfd_A Spastin; ATPase, microt 66.3 2.8 9.6E-05 46.7 3.0 20 458-477 148-167 (389)
168 3eie_A Vacuolar protein sortin 65.8 3 0.0001 45.1 3.1 19 459-477 52-70 (322)
169 2r62_A Cell division protease 65.5 3.7 0.00013 42.8 3.6 19 458-476 44-62 (268)
170 3u61_B DNA polymerase accessor 65.3 4 0.00014 43.9 3.9 36 443-478 30-68 (324)
171 1tue_A Replication protein E1; 65.0 5.2 0.00018 41.1 4.4 32 447-478 44-78 (212)
172 1sxj_B Activator 1 37 kDa subu 64.4 3.9 0.00013 43.4 3.6 36 443-478 25-62 (323)
173 2i4i_A ATP-dependent RNA helic 64.3 2.4 8.2E-05 47.0 1.9 47 73-121 143-189 (417)
174 4akg_A Glutathione S-transfera 64.3 4.7 0.00016 55.8 5.1 36 440-475 1249-1284(2695)
175 1xti_A Probable ATP-dependent 63.9 1.5 5E-05 48.2 0.0 38 81-120 128-165 (391)
176 1in4_A RUVB, holliday junction 63.6 4.5 0.00015 44.1 4.0 32 444-475 30-68 (334)
177 2b8t_A Thymidine kinase; deoxy 63.6 5.3 0.00018 41.3 4.2 31 456-486 10-40 (223)
178 1r6b_X CLPA protein; AAA+, N-t 63.2 3.3 0.00011 50.4 3.1 34 443-476 462-506 (758)
179 2v1u_A Cell division control p 63.1 2.6 8.9E-05 46.0 1.9 34 444-477 24-63 (387)
180 3f9v_A Minichromosome maintena 63.1 2.1 7.1E-05 51.0 1.2 14 460-473 329-342 (595)
181 2j0s_A ATP-dependent RNA helic 62.7 2.1 7.3E-05 47.4 1.1 44 76-121 150-193 (410)
182 2db3_A ATP-dependent RNA helic 62.5 2.8 9.5E-05 47.5 2.1 46 74-121 172-217 (434)
183 1sxj_A Activator 1 95 kDa subu 62.3 4.8 0.00016 46.8 4.0 20 459-478 78-97 (516)
184 3eiq_A Eukaryotic initiation f 62.2 1.8 6.3E-05 47.8 0.5 40 80-121 158-197 (414)
185 3vkg_A Dynein heavy chain, cyt 61.9 5.4 0.00018 55.9 4.9 35 440-474 1286-1320(3245)
186 1qvr_A CLPB protein; coiled co 61.0 4 0.00014 50.6 3.3 33 443-475 562-605 (854)
187 4a2p_A RIG-I, retinoic acid in 61.0 2.8 9.5E-05 48.4 1.7 45 76-121 100-144 (556)
188 2qp9_X Vacuolar protein sortin 61.0 3.7 0.00013 45.3 2.6 19 459-477 85-103 (355)
189 1xwi_A SKD1 protein; VPS4B, AA 60.9 4.9 0.00017 43.7 3.6 18 459-476 46-63 (322)
190 4gl2_A Interferon-induced heli 60.7 2.6 9E-05 50.5 1.5 43 77-119 102-148 (699)
191 3pxi_A Negative regulator of g 60.5 4.5 0.00015 49.4 3.5 37 443-479 184-222 (758)
192 1fnn_A CDC6P, cell division co 60.4 8.7 0.0003 41.9 5.6 18 460-477 46-63 (389)
193 2zts_A Putative uncharacterize 60.1 6.4 0.00022 40.0 4.1 38 457-497 29-66 (251)
194 3u4q_A ATP-dependent helicase/ 59.5 12 0.00039 48.5 7.2 66 440-511 11-78 (1232)
195 1d2n_A N-ethylmaleimide-sensit 58.8 4.4 0.00015 42.5 2.7 19 459-477 65-83 (272)
196 3t15_A Ribulose bisphosphate c 58.8 7.3 0.00025 41.6 4.5 17 459-475 37-53 (293)
197 3i5x_A ATP-dependent RNA helic 57.8 3.6 0.00012 47.9 1.9 41 80-121 200-240 (563)
198 3tbk_A RIG-I helicase domain; 57.8 2.8 9.7E-05 48.1 1.1 44 77-121 98-141 (555)
199 2ykg_A Probable ATP-dependent 57.5 3.8 0.00013 49.1 2.1 42 78-120 108-149 (696)
200 3dmq_A RNA polymerase-associat 56.5 4.5 0.00015 50.9 2.6 38 81-120 248-286 (968)
201 2ius_A DNA translocase FTSK; n 56.1 10 0.00035 44.2 5.3 38 457-494 166-203 (512)
202 2zan_A Vacuolar protein sortin 56.1 6.2 0.00021 44.9 3.5 18 459-476 168-185 (444)
203 3hu3_A Transitional endoplasmi 56.0 5.8 0.0002 45.9 3.3 19 458-476 238-256 (489)
204 2qen_A Walker-type ATPase; unk 55.1 7.1 0.00024 41.8 3.6 34 440-476 16-49 (350)
205 1g41_A Heat shock protein HSLU 54.5 7.8 0.00027 44.3 3.9 18 458-475 50-67 (444)
206 4b4t_M 26S protease regulatory 54.4 5.8 0.0002 45.3 2.8 18 459-476 216-233 (434)
207 3h1t_A Type I site-specific re 54.1 6.1 0.00021 46.5 3.1 43 79-121 272-316 (590)
208 2iut_A DNA translocase FTSK; n 53.8 11 0.00037 44.5 5.0 41 457-497 213-253 (574)
209 4b4t_J 26S protease regulatory 53.2 6.6 0.00023 44.3 3.0 18 459-476 183-200 (405)
210 1u0j_A DNA replication protein 53.0 12 0.0004 39.9 4.8 32 447-478 89-124 (267)
211 3sqw_A ATP-dependent RNA helic 52.2 5 0.00017 47.1 1.9 40 81-121 150-189 (579)
212 4b4t_L 26S protease subunit RP 51.6 6.8 0.00023 44.7 2.8 20 459-478 216-235 (437)
213 2qby_A CDC6 homolog 1, cell di 51.2 6.8 0.00023 42.5 2.7 20 458-477 45-64 (386)
214 3oiy_A Reverse gyrase helicase 50.7 7 0.00024 43.4 2.8 36 82-121 118-153 (414)
215 3fht_A ATP-dependent RNA helic 50.4 2.6 8.8E-05 46.5 -0.9 39 81-120 143-181 (412)
216 4b4t_K 26S protease regulatory 50.1 7.4 0.00025 44.3 2.8 19 459-477 207-225 (428)
217 2fwr_A DNA repair protein RAD2 50.0 5.6 0.00019 45.2 1.8 35 81-120 171-205 (472)
218 2dr3_A UPF0273 protein PH0284; 49.8 15 0.00052 37.1 5.0 29 457-485 22-50 (247)
219 2oap_1 GSPE-2, type II secreti 49.7 10 0.00035 44.1 4.0 28 447-474 249-276 (511)
220 3fho_A ATP-dependent RNA helic 49.7 3.6 0.00012 47.6 0.2 40 80-121 234-273 (508)
221 4a2q_A RIG-I, retinoic acid in 49.6 4.6 0.00016 49.6 1.1 45 76-121 341-385 (797)
222 1sxj_E Activator 1 40 kDa subu 49.6 5.7 0.0002 43.1 1.7 35 443-477 18-55 (354)
223 2oca_A DAR protein, ATP-depend 49.4 5.7 0.00019 45.6 1.8 37 80-121 203-239 (510)
224 1ixz_A ATP-dependent metallopr 48.5 19 0.00064 37.1 5.4 16 460-475 51-66 (254)
225 3mwy_W Chromo domain-containin 48.2 6.5 0.00022 48.3 2.1 36 80-119 344-379 (800)
226 2bwj_A Adenylate kinase 5; pho 48.1 6.9 0.00023 38.4 1.9 21 453-473 7-27 (199)
227 4akg_A Glutathione S-transfera 47.7 13 0.00044 51.6 5.0 39 440-478 905-943 (2695)
228 2gza_A Type IV secretion syste 47.3 10 0.00035 41.9 3.4 26 448-473 165-190 (361)
229 4b4t_I 26S protease regulatory 47.2 8.7 0.0003 43.7 2.8 19 459-477 217-235 (437)
230 4b4t_H 26S protease regulatory 47.1 8.4 0.00029 44.2 2.6 18 458-475 243-260 (467)
231 4a2w_A RIG-I, retinoic acid in 46.6 5.2 0.00018 50.1 0.9 44 77-121 342-385 (936)
232 3fmo_B ATP-dependent RNA helic 45.3 3.4 0.00011 44.5 -1.0 39 81-120 210-248 (300)
233 2pt7_A CAG-ALFA; ATPase, prote 44.5 13 0.00043 40.7 3.5 28 446-473 159-186 (330)
234 1z3i_X Similar to RAD54-like; 44.4 7.5 0.00026 46.5 1.8 36 81-120 170-205 (644)
235 1iy2_A ATP-dependent metallopr 44.4 23 0.0008 37.0 5.5 16 460-475 75-90 (278)
236 2r2a_A Uncharacterized protein 44.3 15 0.0005 37.2 3.7 24 459-482 6-29 (199)
237 3lw7_A Adenylate kinase relate 43.9 8.2 0.00028 36.5 1.7 15 459-473 2-16 (179)
238 3bh0_A DNAB-like replicative h 43.7 15 0.0005 39.8 3.8 40 454-497 64-103 (315)
239 3llm_A ATP-dependent RNA helic 43.3 8 0.00028 39.6 1.6 34 80-118 154-187 (235)
240 2orw_A Thymidine kinase; TMTK, 42.5 23 0.00078 35.0 4.8 28 458-485 3-30 (184)
241 1w5s_A Origin recognition comp 42.5 15 0.0005 40.4 3.7 37 441-477 27-71 (412)
242 3tau_A Guanylate kinase, GMP k 42.5 8.9 0.0003 38.5 1.7 17 457-473 7-23 (208)
243 1kgd_A CASK, peripheral plasma 42.1 9.2 0.00032 37.4 1.8 17 457-473 4-20 (180)
244 1kht_A Adenylate kinase; phosp 42.1 9.2 0.00032 37.1 1.7 16 458-473 3-18 (192)
245 2ce7_A Cell division protein F 41.9 23 0.00079 40.8 5.3 18 459-476 50-67 (476)
246 2j41_A Guanylate kinase; GMP, 41.7 8.5 0.00029 38.0 1.4 18 456-473 4-21 (207)
247 1oyw_A RECQ helicase, ATP-depe 41.6 13 0.00045 43.1 3.3 40 80-121 114-153 (523)
248 3tr0_A Guanylate kinase, GMP k 41.2 8.7 0.0003 37.9 1.4 18 456-473 5-22 (205)
249 2w0m_A SSO2452; RECA, SSPF, un 40.8 27 0.00092 34.7 5.1 28 457-484 22-49 (235)
250 1xx6_A Thymidine kinase; NESG, 40.0 23 0.00078 35.5 4.3 30 457-486 7-36 (191)
251 2q6t_A DNAB replication FORK h 39.9 16 0.00055 41.5 3.5 41 454-497 196-236 (444)
252 1r6b_X CLPA protein; AAA+, N-t 39.8 16 0.00055 44.3 3.8 36 444-479 191-228 (758)
253 3vaa_A Shikimate kinase, SK; s 39.4 10 0.00036 37.6 1.7 19 456-474 23-41 (199)
254 2r2a_A Uncharacterized protein 39.1 8.9 0.00031 38.8 1.1 14 107-120 87-100 (199)
255 2z4s_A Chromosomal replication 39.0 21 0.00073 40.4 4.4 18 459-476 131-148 (440)
256 3trf_A Shikimate kinase, SK; a 38.9 11 0.00038 36.6 1.8 16 458-473 5-20 (185)
257 1p9r_A General secretion pathw 38.5 20 0.00069 40.5 4.0 39 443-484 154-192 (418)
258 2zpa_A Uncharacterized protein 38.4 19 0.00065 43.2 3.9 58 439-505 175-232 (671)
259 2r6a_A DNAB helicase, replicat 38.0 27 0.00093 39.6 5.1 46 453-501 198-243 (454)
260 1e9r_A Conjugal transfer prote 37.7 22 0.00075 39.9 4.2 19 457-475 52-70 (437)
261 3ney_A 55 kDa erythrocyte memb 37.2 12 0.00042 37.8 1.8 17 457-473 18-34 (197)
262 3kb2_A SPBC2 prophage-derived 36.1 13 0.00045 35.3 1.7 14 460-473 3-16 (173)
263 3iij_A Coilin-interacting nucl 36.1 14 0.00047 35.8 1.9 18 457-474 10-27 (180)
264 2qor_A Guanylate kinase; phosp 35.9 14 0.00047 36.9 1.9 18 456-473 10-27 (204)
265 3cm0_A Adenylate kinase; ATP-b 35.5 11 0.00037 36.6 1.0 17 457-473 3-19 (186)
266 3bgw_A DNAB-like replicative h 35.5 22 0.00075 40.5 3.7 40 454-497 193-232 (444)
267 3fmp_B ATP-dependent RNA helic 35.2 5.9 0.0002 45.1 -1.1 39 81-120 210-248 (479)
268 2v54_A DTMP kinase, thymidylat 35.2 14 0.00047 36.4 1.8 17 457-473 3-19 (204)
269 2qmh_A HPR kinase/phosphorylas 35.2 17 0.00057 37.2 2.3 17 457-473 33-49 (205)
270 2c95_A Adenylate kinase 1; tra 35.2 16 0.00056 35.5 2.3 18 456-473 7-24 (196)
271 2eyu_A Twitching motility prot 35.0 9.9 0.00034 40.1 0.7 20 455-474 22-41 (261)
272 1q57_A DNA primase/helicase; d 34.8 14 0.0005 42.4 2.1 42 454-498 238-279 (503)
273 2cvh_A DNA repair and recombin 34.3 15 0.00053 36.4 2.0 24 457-480 19-42 (220)
274 3a8t_A Adenylate isopentenyltr 34.1 17 0.00058 40.0 2.4 19 458-476 40-58 (339)
275 2dhr_A FTSH; AAA+ protein, hex 34.0 38 0.0013 39.2 5.5 17 460-476 66-82 (499)
276 1cr0_A DNA primase/helicase; R 33.9 24 0.00082 37.2 3.5 32 454-485 31-62 (296)
277 3m6a_A ATP-dependent protease 33.7 19 0.00066 42.0 3.0 21 457-477 107-127 (543)
278 2kjq_A DNAA-related protein; s 33.7 21 0.0007 34.1 2.7 18 457-474 35-52 (149)
279 3exa_A TRNA delta(2)-isopenten 33.5 18 0.0006 39.5 2.4 19 458-476 3-21 (322)
280 2plr_A DTMP kinase, probable t 33.0 13 0.00046 36.6 1.2 17 457-473 3-19 (213)
281 3vkg_A Dynein heavy chain, cyt 32.8 29 0.001 48.8 4.8 40 440-479 888-927 (3245)
282 1lvg_A Guanylate kinase, GMP k 32.6 16 0.00056 36.3 1.8 17 457-473 3-19 (198)
283 1qvr_A CLPB protein; coiled co 32.5 23 0.0008 43.7 3.6 37 443-479 174-212 (854)
284 1qhx_A CPT, protein (chloramph 31.9 17 0.00058 34.9 1.8 16 458-473 3-18 (178)
285 2jaq_A Deoxyguanosine kinase; 31.8 16 0.00056 35.7 1.7 14 460-473 2-15 (205)
286 4a1f_A DNAB helicase, replicat 31.6 41 0.0014 36.9 5.0 46 451-500 39-84 (338)
287 2zj8_A DNA helicase, putative 31.5 13 0.00046 44.7 1.2 41 79-121 112-152 (720)
288 2xgj_A ATP-dependent RNA helic 31.5 12 0.00043 47.1 0.9 40 81-122 168-207 (1010)
289 1gm5_A RECG; helicase, replica 31.3 19 0.00064 44.2 2.4 32 81-119 471-502 (780)
290 1zd8_A GTP:AMP phosphotransfer 31.2 16 0.00054 37.0 1.5 17 457-473 6-22 (227)
291 1zak_A Adenylate kinase; ATP:A 31.1 15 0.00051 37.0 1.3 17 457-473 4-20 (222)
292 1ex7_A Guanylate kinase; subst 31.1 18 0.00061 36.2 1.8 15 459-473 2-16 (186)
293 1z6g_A Guanylate kinase; struc 31.0 18 0.00061 36.7 1.8 19 455-473 20-38 (218)
294 2rhm_A Putative kinase; P-loop 30.9 14 0.00048 35.9 1.0 16 458-473 5-20 (193)
295 1ly1_A Polynucleotide kinase; 30.7 17 0.00058 34.8 1.5 14 460-473 4-17 (181)
296 1ypw_A Transitional endoplasmi 30.7 19 0.00066 44.2 2.3 19 457-475 237-255 (806)
297 2fna_A Conserved hypothetical 30.7 19 0.00065 38.4 2.1 32 440-476 17-48 (357)
298 2va8_A SSO2462, SKI2-type heli 30.5 13 0.00046 44.7 0.9 41 79-121 119-159 (715)
299 2x8a_A Nuclear valosin-contain 30.3 24 0.00082 37.2 2.8 16 460-475 46-61 (274)
300 1nks_A Adenylate kinase; therm 29.7 16 0.00056 35.2 1.2 14 460-473 3-16 (194)
301 3ice_A Transcription terminati 29.6 86 0.0029 35.3 7.1 51 425-475 133-191 (422)
302 1n0w_A DNA repair protein RAD5 29.6 26 0.0009 35.2 2.8 25 457-481 23-47 (243)
303 1tev_A UMP-CMP kinase; ploop, 29.6 17 0.00057 35.3 1.2 16 458-473 3-18 (196)
304 3tlx_A Adenylate kinase 2; str 29.5 22 0.00077 36.6 2.3 17 457-473 28-44 (243)
305 2wwf_A Thymidilate kinase, put 29.4 18 0.00061 35.8 1.5 17 457-473 9-25 (212)
306 3a00_A Guanylate kinase, GMP k 28.9 22 0.00074 34.8 2.0 16 458-473 1-16 (186)
307 1ny5_A Transcriptional regulat 28.8 61 0.0021 35.9 5.9 47 451-499 153-199 (387)
308 1aky_A Adenylate kinase; ATP:A 28.7 20 0.00069 35.9 1.8 16 458-473 4-19 (220)
309 2p6r_A Afuhel308 helicase; pro 28.6 14 0.00048 44.4 0.6 41 79-121 112-152 (702)
310 2w00_A HSDR, R.ECOR124I; ATP-b 28.5 17 0.00059 46.0 1.4 41 80-120 374-414 (1038)
311 2ehv_A Hypothetical protein PH 28.4 21 0.00073 36.1 1.9 24 456-479 28-51 (251)
312 3foz_A TRNA delta(2)-isopenten 28.1 25 0.00085 38.3 2.4 18 459-476 11-28 (316)
313 1nn5_A Similar to deoxythymidy 27.9 20 0.00067 35.5 1.5 17 457-473 8-24 (215)
314 1kag_A SKI, shikimate kinase I 27.9 23 0.00078 33.8 1.9 16 458-473 4-19 (173)
315 3b85_A Phosphate starvation-in 27.9 45 0.0015 33.7 4.2 25 451-475 15-39 (208)
316 1u94_A RECA protein, recombina 27.6 56 0.0019 36.0 5.2 29 457-485 62-90 (356)
317 2v1x_A ATP-dependent DNA helic 27.6 24 0.00082 41.7 2.3 42 80-121 135-179 (591)
318 2cdn_A Adenylate kinase; phosp 27.4 22 0.00076 35.0 1.8 16 458-473 20-35 (201)
319 1ak2_A Adenylate kinase isoenz 27.4 22 0.00075 36.2 1.8 17 457-473 15-31 (233)
320 3tmk_A Thymidylate kinase; pho 27.1 21 0.00071 36.6 1.5 17 457-473 4-20 (216)
321 4eaq_A DTMP kinase, thymidylat 27.1 19 0.00066 36.9 1.2 17 457-473 25-41 (229)
322 1zp6_A Hypothetical protein AT 27.0 14 0.00047 36.0 0.1 18 456-473 7-24 (191)
323 1svm_A Large T antigen; AAA+ f 26.9 24 0.00082 39.3 2.1 20 454-473 165-184 (377)
324 3cf2_A TER ATPase, transitiona 26.8 24 0.0008 43.4 2.1 17 459-475 239-255 (806)
325 3v9p_A DTMP kinase, thymidylat 26.7 20 0.00069 37.0 1.3 17 457-473 24-40 (227)
326 4edh_A DTMP kinase, thymidylat 26.7 20 0.00068 36.5 1.3 28 457-485 5-32 (213)
327 2z0h_A DTMP kinase, thymidylat 26.7 22 0.00076 34.5 1.6 14 460-473 2-15 (197)
328 1m7g_A Adenylylsulfate kinase; 26.6 24 0.00082 35.2 1.8 19 455-473 22-40 (211)
329 3lnc_A Guanylate kinase, GMP k 26.4 21 0.00072 36.2 1.4 18 457-474 26-43 (231)
330 4tmk_A Protein (thymidylate ki 26.3 22 0.00074 36.3 1.5 29 457-486 2-30 (213)
331 2zr9_A Protein RECA, recombina 26.2 57 0.0019 35.7 4.9 29 457-485 60-88 (349)
332 2ze6_A Isopentenyl transferase 26.1 20 0.00068 37.3 1.2 14 460-473 3-16 (253)
333 2yvu_A Probable adenylyl-sulfa 25.9 21 0.00072 34.7 1.2 17 457-473 12-28 (186)
334 4eun_A Thermoresistant glucoki 25.8 25 0.00084 34.8 1.7 17 457-473 28-44 (200)
335 1rz3_A Hypothetical protein rb 25.5 37 0.0013 33.6 3.0 28 447-474 6-38 (201)
336 1nlf_A Regulatory protein REPA 25.5 38 0.0013 35.4 3.2 26 457-482 29-54 (279)
337 3l9o_A ATP-dependent RNA helic 25.5 15 0.0005 47.0 -0.0 40 81-122 266-305 (1108)
338 2z43_A DNA repair and recombin 25.4 41 0.0014 36.2 3.6 27 457-483 106-132 (324)
339 4a4z_A Antiviral helicase SKI2 25.4 19 0.00064 45.4 0.9 41 80-122 122-162 (997)
340 1s96_A Guanylate kinase, GMP k 25.3 25 0.00085 35.9 1.7 19 455-473 13-31 (219)
341 1y63_A LMAJ004144AAA protein; 25.2 26 0.00089 34.2 1.8 17 457-473 9-25 (184)
342 4ddu_A Reverse gyrase; topoiso 25.0 30 0.001 44.2 2.6 37 81-121 174-210 (1104)
343 1e6c_A Shikimate kinase; phosp 24.9 27 0.00093 33.1 1.8 15 459-473 3-17 (173)
344 2pbr_A DTMP kinase, thymidylat 24.8 26 0.00089 33.8 1.7 14 460-473 2-15 (195)
345 3jvv_A Twitching mobility prot 24.8 31 0.0011 38.1 2.4 27 456-483 121-147 (356)
346 1ry6_A Internal kinesin; kines 24.8 58 0.002 36.0 4.6 35 441-475 61-102 (360)
347 2pez_A Bifunctional 3'-phospho 24.7 23 0.00078 34.2 1.2 17 457-473 4-20 (179)
348 3dm5_A SRP54, signal recogniti 24.7 1.1E+02 0.0036 34.9 6.9 25 459-483 101-125 (443)
349 2vli_A Antibiotic resistance p 24.7 22 0.00076 34.1 1.1 16 458-473 5-20 (183)
350 1gtv_A TMK, thymidylate kinase 24.6 15 0.0005 36.5 -0.2 14 460-473 2-15 (214)
351 2v9p_A Replication protein E1; 24.6 29 0.00098 37.5 2.1 27 447-473 115-141 (305)
352 2vp4_A Deoxynucleoside kinase; 24.6 23 0.00078 36.1 1.3 17 457-473 19-35 (230)
353 3be4_A Adenylate kinase; malar 24.4 25 0.00085 35.3 1.5 16 458-473 5-20 (217)
354 2px0_A Flagellar biosynthesis 24.2 62 0.0021 34.5 4.6 27 457-483 104-130 (296)
355 3t61_A Gluconokinase; PSI-biol 24.1 28 0.00095 34.3 1.8 15 459-473 19-33 (202)
356 1qf9_A UMP/CMP kinase, protein 23.9 22 0.00076 34.2 1.0 15 459-473 7-21 (194)
357 2eyq_A TRCF, transcription-rep 23.8 33 0.0011 44.0 2.7 32 81-119 706-737 (1151)
358 1xp8_A RECA protein, recombina 23.7 68 0.0023 35.5 4.9 29 457-485 73-101 (366)
359 3lv8_A DTMP kinase, thymidylat 23.6 26 0.0009 36.3 1.5 17 457-473 26-42 (236)
360 3a4m_A L-seryl-tRNA(SEC) kinas 23.6 24 0.00081 36.8 1.2 16 458-473 4-19 (260)
361 4ag6_A VIRB4 ATPase, type IV s 23.5 65 0.0022 35.5 4.8 37 457-497 34-70 (392)
362 1ukz_A Uridylate kinase; trans 23.4 27 0.00094 34.3 1.5 15 459-473 16-30 (203)
363 2vhj_A Ntpase P4, P4; non- hyd 23.2 39 0.0013 37.0 2.8 25 457-481 122-146 (331)
364 1znw_A Guanylate kinase, GMP k 23.1 29 0.001 34.5 1.7 20 454-473 16-35 (207)
365 1knq_A Gluconate kinase; ALFA/ 23.1 26 0.00088 33.6 1.3 17 457-473 7-23 (175)
366 3hr8_A Protein RECA; alpha and 22.9 81 0.0028 34.8 5.3 29 457-485 60-88 (356)
367 3fb4_A Adenylate kinase; psych 22.9 28 0.00097 34.6 1.5 14 460-473 2-15 (216)
368 3eph_A TRNA isopentenyltransfe 22.8 38 0.0013 38.2 2.7 18 459-476 3-20 (409)
369 3dl0_A Adenylate kinase; phosp 22.6 29 0.00099 34.6 1.5 14 460-473 2-15 (216)
370 4a74_A DNA repair and recombin 22.6 24 0.00084 35.1 1.0 24 456-479 23-46 (231)
371 2ewv_A Twitching motility prot 22.5 30 0.001 38.3 1.7 19 456-474 134-152 (372)
372 1ypw_A Transitional endoplasmi 22.3 33 0.0011 42.2 2.2 18 457-474 510-527 (806)
373 3cf2_A TER ATPase, transitiona 22.3 37 0.0013 41.7 2.6 15 459-473 512-526 (806)
374 1zuh_A Shikimate kinase; alpha 22.3 32 0.0011 32.7 1.7 15 459-473 8-22 (168)
375 1p5z_B DCK, deoxycytidine kina 22.2 27 0.00092 36.2 1.3 17 457-473 23-39 (263)
376 2xb4_A Adenylate kinase; ATP-b 22.2 31 0.0011 34.9 1.7 14 460-473 2-15 (223)
377 2pt5_A Shikimate kinase, SK; a 22.1 32 0.0011 32.5 1.7 14 460-473 2-15 (168)
378 2r8r_A Sensor protein; KDPD, P 22.1 96 0.0033 32.0 5.4 26 460-485 8-33 (228)
379 1gvn_B Zeta; postsegregational 22.0 41 0.0014 35.7 2.7 16 458-473 33-48 (287)
380 3crm_A TRNA delta(2)-isopenten 21.6 39 0.0013 36.9 2.4 17 459-475 6-22 (323)
381 1v5w_A DMC1, meiotic recombina 21.5 54 0.0018 35.7 3.5 28 457-484 121-148 (343)
382 1gku_B Reverse gyrase, TOP-RG; 21.4 19 0.00066 45.6 -0.1 39 77-121 151-189 (1054)
383 2bdt_A BH3686; alpha-beta prot 21.4 28 0.00096 33.8 1.1 16 458-473 2-17 (189)
384 3dzd_A Transcriptional regulat 21.1 73 0.0025 35.0 4.5 28 446-473 140-167 (368)
385 1e4v_A Adenylate kinase; trans 20.9 30 0.001 34.5 1.3 14 460-473 2-15 (214)
386 4gp7_A Metallophosphoesterase; 20.7 31 0.0011 33.3 1.2 18 457-474 8-25 (171)
387 3kl4_A SRP54, signal recogniti 20.7 78 0.0027 35.9 4.7 27 458-484 97-123 (433)
No 1
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=100.00 E-value=3.7e-48 Score=466.38 Aligned_cols=132 Identities=20% Similarity=0.339 Sum_probs=108.4
Q ss_pred hHHH---HhhhhhhhhhhhhhhcCCCCCCCcCccCcccccc-cCCCCCCCCCHHHHHHhchhCCCCHHHHHHHHhhcCcE
Q psy11433 9 IVDG---RCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGR-EAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKI 84 (941)
Q Consensus 9 ~i~~---~C~~L~~~~~~~~~~~~~~~~~C~fy~~~~~~~~-~~~l~~~i~diEdL~~~g~~~~~CPY~~aR~~~~~AdI 84 (941)
..++ .|.+|++++. ......|+||.+.+..+. .+.+..+++|+|++++.|++++.||||.+|+.+..|||
T Consensus 105 ~~~~~~~~C~~l~~~~~------~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~~~~~~~~~CPy~~aR~~~~~ADv 178 (620)
T 4a15_A 105 NAESLAKFCNMKKREVM------AGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYDYGERNNVCPYESMKAALPDADI 178 (620)
T ss_dssp CHHHHHHHHHHHHHHHH------TTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHHHHHHHTTCCHHHHHHHHGGGCSE
T ss_pred hhhhHHHHHHHHHhccc------cCCCCCCCcccccCcccchhHHhccCCCCHHHHHHHhhhcCCCccHHHHHHhhcCCE
Confidence 4554 9999987643 123467999998754221 12234578999999999999999999999999999999
Q ss_pred EEEccccccChhhhhHhhhh---cCCCcEEEEecCccccHHhhhhcccccCHHHHHHHHHHHHHH
Q psy11433 85 VVYSYHYLLDPKIANVVSKE---LARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 146 (941)
Q Consensus 85 Vv~~y~yLl~~~~r~~~~~~---l~~~~ivI~DEAHNL~d~~~~~~S~~is~~~l~~a~~~l~~~ 146 (941)
||+||||||++.+++.+... .+++++|||||||||+|+|++++|.+||..+|..+.+++..+
T Consensus 179 VV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~~~~~l~~~ 243 (620)
T 4a15_A 179 VIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRADREAQAY 243 (620)
T ss_dssp EEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHHHHHHHHHT
T ss_pred EEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHHHHHHHHHH
Confidence 99999999999988753222 257899999999999999999999999999999999998764
No 2
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=100.00 E-value=7.6e-37 Score=364.04 Aligned_cols=104 Identities=21% Similarity=0.376 Sum_probs=85.8
Q ss_pred CCcCccCcccccccCCCCCCCCCHHHHHHh----chhCCCCHHHHHHHHhhcCcEEEEccccccChhhhhHhhhhcCCCc
Q psy11433 34 VCDFYEKFDAVGREAPLAPGVYSITKLKEM----GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSS 109 (941)
Q Consensus 34 ~C~fy~~~~~~~~~~~l~~~i~diEdL~~~----g~~~~~CPY~~aR~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ 109 (941)
.|+|+.+....+ ...+++++.+. |+.++.||||.+|+.+..|||||+||+|||++.++..++.. ++..
T Consensus 104 ~c~~~~~~~~~g-------~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~~~-~~~~ 175 (551)
T 3crv_A 104 YCELKGSIVEVK-------TDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFIDID-LREY 175 (551)
T ss_dssp GCTTTTCCCCCC-------CCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSCCC-STTE
T ss_pred CCCCcccccccc-------ccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhcCCC-cCCe
Confidence 588887654322 15567776655 45889999999999999999999999999999877765432 4788
Q ss_pred EEEEecCccccHHhhhhcccccCHHHHHHHHHHHHHH
Q psy11433 110 VVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 146 (941)
Q Consensus 110 ivI~DEAHNL~d~~~~~~S~~is~~~l~~a~~~l~~~ 146 (941)
+|||||||||++ |++++|.+|+..+|..+.+.+..+
T Consensus 176 ~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~ 211 (551)
T 3crv_A 176 MIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSE 211 (551)
T ss_dssp EEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCH
T ss_pred EEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999998877543
No 3
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=100.00 E-value=8.4e-34 Score=341.51 Aligned_cols=237 Identities=22% Similarity=0.300 Sum_probs=183.2
Q ss_pred CCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHHHHHHh
Q psy11433 439 YIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYI 518 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~~~~~~ 518 (941)
+|||+|.+||.+|++++.+|+++++|||||||||+++|+|++.|+...+ .+++|+|+|++++.|+.+|++++...
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~---~kvli~t~T~~l~~Qi~~el~~l~~~-- 77 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERK---LKVLYLVRTNSQEEQVIKELRSLSST-- 77 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHT---CEEEEEESSHHHHHHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcC---CeEEEECCCHHHHHHHHHHHHHHhhc--
Confidence 3899999999999999999999999999999999999999999987643 68999999999999999999998542
Q ss_pred hcccccceeeEEecccccccc-cccccccchhhhhhhccccccccccccCCCccccccccccccccccccccHHHHHHHh
Q psy11433 519 KHNEEINMTGLVLSSRKNLCI-HSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYG 597 (941)
Q Consensus 519 ~~~~~~~~~~~~l~sr~~lC~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~r~~~~~l~~lg 597 (941)
..++.+++.||+++|+ ++.+....+ + .+.. ....+..+
T Consensus 78 -----~~~~~~~l~gr~~lC~~~~~~~~~~~--------------------~-------------~~~~--~~~~C~~l- 116 (620)
T 4a15_A 78 -----MKIRAIPMQGRVNMCILYRMVDDLHE--------------------I-------------NAES--LAKFCNMK- 116 (620)
T ss_dssp -----SCCCEEECCCHHHHCSSHHHHCCCSS--------------------C-------------CHHH--HHHHHHHH-
T ss_pred -----cCeEEEEEECCCcccccChhhhhccc--------------------c-------------hhhh--HHHHHHHH-
Confidence 2678899999999999 875432110 0 0000 00000000
Q ss_pred hhHhhhhcccCCceEEeccchHHHHHHHHHHhhcCchhhhhhcccccccccccccchhhhhhhccccccCcccccccchh
Q psy11433 598 QLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSV 677 (941)
Q Consensus 598 ~~l~~~~~~vp~Gi~~Ff~Sy~~~~~~l~~w~~~gi~~~l~~~K~if~E~~~~~~~~~~~l~~y~~~~~~~Ga~L~av~~ 677 (941)
.+.|.
T Consensus 117 ---------------------------~~~~~------------------------------------------------ 121 (620)
T 4a15_A 117 ---------------------------KREVM------------------------------------------------ 121 (620)
T ss_dssp ---------------------------HHHHH------------------------------------------------
T ss_pred ---------------------------Hhccc------------------------------------------------
Confidence 00010
Q ss_pred hcccccCCCCCCCCCchhhhhhc-cCCCCCCCCCCHHHHHHhchhcCcCChHHHHHHHHccCEEEeccccccCHHHhhHh
Q psy11433 678 RDRHKAGENIPVCDFYEKFDAVG-REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVV 756 (941)
Q Consensus 678 ~~rGK~sEGid~C~F~d~~~~~g-R~~vi~~~v~diedL~~~g~~~g~CPY~~~r~~~~~AdiIi~ny~yLld~~~~~~~ 756 (941)
.+....|+|+.+.+..+ +...+..+++|++++++.|++++.||||.+|+.+..|||||+||+||||+.+++++
T Consensus 122 ------~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~ 195 (620)
T 4a15_A 122 ------AGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKF 195 (620)
T ss_dssp ------TTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHHHHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHH
T ss_pred ------cCCCCCCCcccccCcccchhHHhccCCCCHHHHHHHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHH
Confidence 00013588887543211 11122346899999999999999999999999999999999999999999998764
Q ss_pred hhh---ccCCcEEEEeCCcCchHHhhhhcccccCHHHHHHHHHHHHHHH
Q psy11433 757 SKE---LARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE 802 (941)
Q Consensus 757 ~~~---l~~~~ilIiDEAHNL~d~~~~~~S~~ls~~~l~~a~~~l~~~~ 802 (941)
... .+++++|||||||||+|+|++++|.+|+..++..+.+++..+.
T Consensus 196 ~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~~~~~l~~~~ 244 (620)
T 4a15_A 196 LSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRADREAQAYG 244 (620)
T ss_dssp HHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHHHHHHHHHTT
T ss_pred HHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHHHHHHHHHHH
Confidence 332 3688999999999999999999999999999999999988753
No 4
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.96 E-value=1.5e-30 Score=308.98 Aligned_cols=90 Identities=24% Similarity=0.465 Sum_probs=62.0
Q ss_pred CHHHHHHhchhCCCCHHHHHHHHhhcCcEEEEccccccChhhhhHhhh-----hcCCCcEEEEecCccccHHhhhhcccc
Q psy11433 56 SITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSK-----ELARSSVVVFDEAHNIDNVCVDSLSVR 130 (941)
Q Consensus 56 diEdL~~~g~~~~~CPY~~aR~~~~~AdIVv~~y~yLl~~~~r~~~~~-----~l~~~~ivI~DEAHNL~d~~~~~~S~~ 130 (941)
+.+.+..++++++.||||.+|+.+..|||||+||+|||++.+++.++. .+++..+|||||||||++ +++++|.+
T Consensus 119 ~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~-a~~~~s~~ 197 (540)
T 2vl7_A 119 PSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE-ADKWFTRK 197 (540)
T ss_dssp --------------------CTTGGGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG-GGGGGCEE
T ss_pred cHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH-HHHHhccc
Confidence 344566778889999999999999999999999999999998876651 246789999999999966 89999999
Q ss_pred cCHHHHHHHHHHHHHH
Q psy11433 131 INRRTIEKAVGNIQTL 146 (941)
Q Consensus 131 is~~~l~~a~~~l~~~ 146 (941)
|+..++..+.+++..+
T Consensus 198 ls~~~l~~~~~~l~~~ 213 (540)
T 2vl7_A 198 ISRKMLERALKEIEIV 213 (540)
T ss_dssp ECHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999888653
No 5
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.93 E-value=2.9e-26 Score=272.96 Aligned_cols=205 Identities=21% Similarity=0.307 Sum_probs=160.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHHHHHHh
Q psy11433 439 YIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYI 518 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~~~~~~ 518 (941)
+|||+|.+||+.|++++.+|+++++|||||||||++||+|++.+ ..+++++|+|+.++.|+.+|++.+.+
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-------~~~v~i~~pt~~l~~q~~~~~~~l~~--- 72 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-------KPKVLFVVRTHNEFYPIYRDLTKIRE--- 72 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-------CSEEEEEESSGGGHHHHHHHHTTCCC---
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-------CCeEEEEcCCHHHHHHHHHHHHHHhh---
Confidence 48999999999999999999999999999999999999999982 36899999999999999999987732
Q ss_pred hcccccceeeEEecccccccccccccccchhhhhhhccccccccccccCCCccccccccccccccccccccHHHHHHHhh
Q psy11433 519 KHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQ 598 (941)
Q Consensus 519 ~~~~~~~~~~~~l~sr~~lC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~r~~~~~l~~lg~ 598 (941)
...++.+++.||.++|+++.+. ... ++
T Consensus 73 ----~~~~~~~~l~gr~~~c~~~~~~-~~~---------------------------------------~~--------- 99 (551)
T 3crv_A 73 ----KRNITFSFLVGKPSSCLYAEKG-AES---------------------------------------ED--------- 99 (551)
T ss_dssp ----SSCCCEEECCCHHHHCTTBCTT-CCG---------------------------------------GG---------
T ss_pred ----hcCccEEEEccccccCcCchhc-CCC---------------------------------------cc---------
Confidence 2256778899999999986432 100 00
Q ss_pred hHhhhhcccCCceEEeccchHHHHHHHHHHhhcCchhhhhhcccccccccccccchhhhhhhccccccCcccccccchhh
Q psy11433 599 LLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVR 678 (941)
Q Consensus 599 ~l~~~~~~vp~Gi~~Ff~Sy~~~~~~l~~w~~~gi~~~l~~~K~if~E~~~~~~~~~~~l~~y~~~~~~~Ga~L~av~~~ 678 (941)
. +
T Consensus 100 ---------------------------------------------------------~------~--------------- 101 (551)
T 3crv_A 100 ---------------------------------------------------------I------P--------------- 101 (551)
T ss_dssp ---------------------------------------------------------C------C---------------
T ss_pred ---------------------------------------------------------c------c---------------
Confidence 0 0
Q ss_pred cccccCCCCCCCCCchhhhhhccCCCCCCCCCCHHHHHH----hchhcCcCChHHHHHHHHccCEEEeccccccCHHHhh
Q psy11433 679 DRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKE----MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIAN 754 (941)
Q Consensus 679 ~rGK~sEGid~C~F~d~~~~~gR~~vi~~~v~diedL~~----~g~~~g~CPY~~~r~~~~~AdiIi~ny~yLld~~~~~ 754 (941)
|+ .|+|+++....| ...+++++.+ .|+..+.|||+.+|+.+..|||||+||+|||++..+.
T Consensus 102 c~--------~c~~~~~~~~~g-------~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~ 166 (551)
T 3crv_A 102 CK--------YCELKGSIVEVK-------TDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYRE 166 (551)
T ss_dssp GG--------GCTTTTCCCCCC-------CCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHT
T ss_pred cC--------CCCCcccccccc-------ccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHH
Confidence 10 244443111111 0234444443 3457889999999999999999999999999998876
Q ss_pred HhhhhccCCcEEEEeCCcCchHHhhhhcccccCHHHHHHHHHHHHHH
Q psy11433 755 VVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL 801 (941)
Q Consensus 755 ~~~~~l~~~~ilIiDEAHNL~d~~~~~~S~~ls~~~l~~a~~~l~~~ 801 (941)
.++. .++..+|||||||||+| |++++|.+|+..++..+.+++..+
T Consensus 167 ~~~~-~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~ 211 (551)
T 3crv_A 167 FIDI-DLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSE 211 (551)
T ss_dssp TSCC-CSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCH
T ss_pred hcCC-CcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHH
Confidence 6442 24788999999999999 999999999999999999887544
No 6
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.93 E-value=2.6e-26 Score=272.68 Aligned_cols=226 Identities=22% Similarity=0.362 Sum_probs=141.2
Q ss_pred CCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHHHHHHh
Q psy11433 439 YIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYI 518 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~~~~~~ 518 (941)
+|||+|.++|..|++++.+|+++++|||||||||+++|+|++.+ ..+++++|+|++++.|++++++++
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-------~~~~~~~~~t~~l~~q~~~~~~~l----- 74 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-------KKKVLIFTRTHSQLDSIYKNAKLL----- 74 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-------TCEEEEEESCHHHHHHHHHHHGGG-----
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-------CCcEEEEcCCHHHHHHHHHHHHhc-----
Confidence 59999999999999999999999999999999999999999875 268999999999999999988764
Q ss_pred hcccccceeeEEecccccccccccccccchhhhhhhccccccccccccCCCccccccccccccccccccccHHHHHHHhh
Q psy11433 519 KHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQ 598 (941)
Q Consensus 519 ~~~~~~~~~~~~l~sr~~lC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~r~~~~~l~~lg~ 598 (941)
.++.++++||.++|+++.....
T Consensus 75 ------~~~~~~l~gr~~lC~~~~~~~~---------------------------------------------------- 96 (540)
T 2vl7_A 75 ------GLKTGFLIGKSASCIYAQGDEE---------------------------------------------------- 96 (540)
T ss_dssp ------TCCEEEC-------------------------------------------------------------------
T ss_pred ------CCcEEEecCCccccCCchhccc----------------------------------------------------
Confidence 4666889999999998643100
Q ss_pred hHhhhhcccCCceEEeccchHHHHHHHHHHhhcCchhhhhhcccccccccccccchhhhhhhccccccCcccccccchhh
Q psy11433 599 LLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVR 678 (941)
Q Consensus 599 ~l~~~~~~vp~Gi~~Ff~Sy~~~~~~l~~w~~~gi~~~l~~~K~if~E~~~~~~~~~~~l~~y~~~~~~~Ga~L~av~~~ 678 (941)
|++..| +
T Consensus 97 ---------~~~~~c--~-------------------------------------------------------------- 103 (540)
T 2vl7_A 97 ---------PDEINC--S-------------------------------------------------------------- 103 (540)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------ccccCC--C--------------------------------------------------------------
Confidence 000000 0
Q ss_pred cccccCCCCCCCCCchhhhhhccCCCCCCCCCCHHHHHHhchhcCcCChHHHHHHHHccCEEEeccccccCHHHhhHhhh
Q psy11433 679 DRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSK 758 (941)
Q Consensus 679 ~rGK~sEGid~C~F~d~~~~~gR~~vi~~~v~diedL~~~g~~~g~CPY~~~r~~~~~AdiIi~ny~yLld~~~~~~~~~ 758 (941)
.|++++.....|. . ++.+.+..+|++.+.|||+.+|+.+..|||||+||+|||++.+++.++.
T Consensus 104 ----------~c~~~~~~~~~gd--~-----~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~~~~~~ 166 (540)
T 2vl7_A 104 ----------KCRLKDKIKTIED--K-----EPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIRNSVFC 166 (540)
T ss_dssp ----------------------------------------------------CTTGGGCSEEEEETHHHHSHHHHHHHSC
T ss_pred ----------CCCchhccccccc--C-----CcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHHHHhhCc
Confidence 0001110000000 0 0011122334557889999999999999999999999999999877651
Q ss_pred -----hccCCcEEEEeCCcCchHHhhhhcccccCHHHHHHHHHHHHHHHhHHHHhhHHhHHHHHHHHHHHHHHHHH
Q psy11433 759 -----ELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRD 829 (941)
Q Consensus 759 -----~l~~~~ilIiDEAHNL~d~~~~~~S~~ls~~~l~~a~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~l~~ 829 (941)
.+++..+|||||||||++ +++++|.+|+..++..+.+++..+... +..+..++.+.++.|.+++..
T Consensus 167 ~~~~~~~~~~~~vIiDEAHnl~~-a~~~~s~~ls~~~l~~~~~~l~~~~~~----~~~~~~~l~~~~~~l~~~l~~ 237 (540)
T 2vl7_A 167 NKDDCLKLEDYLIVIDEAHNLLE-ADKWFTRKISRKMLERALKEIEIVERL----NRIDAKKVKDYINLLIDYMSK 237 (540)
T ss_dssp SSTTSCCGGGEEEEETTGGGGGG-GGGGGCEEECHHHHHHHHHHHHHHHHT----TCCCCHHHHHHHHHHHHHHHT
T ss_pred ccccccCcCCCEEEEEccccHHH-HHHHhccccCHHHHHHHHHHHHHHHhc----chhhHHHHHHHHHHHHHHHHH
Confidence 346789999999999955 899999999999999999988765321 112234455666666666643
No 7
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.79 E-value=8.8e-09 Score=108.15 Aligned_cols=47 Identities=17% Similarity=0.127 Sum_probs=39.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhc
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~ 485 (941)
+.|..|+|.|.+.+.. +.+|+++++.||||+|||++++.|++.++..
T Consensus 43 ~~~~~~~~~Q~~~i~~----~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~ 89 (236)
T 2pl3_A 43 AQYRLVTEIQKQTIGL----ALQGKDVLGAAKTGSGKTLAFLVPVLEALYR 89 (236)
T ss_dssp TTCCBCCHHHHHHHHH----HHTTCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH----HhCCCCEEEEeCCCCcHHHHHHHHHHHHHHh
Confidence 4566799999777654 4578999999999999999999999987653
No 8
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.63 E-value=3.5e-08 Score=110.54 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=50.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELA 511 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~ 511 (941)
+.|.+|||.|.+.+..+ .+|+.+++.+|||+|||++++.|++.++.... ...++++.+++.....|..+++.
T Consensus 39 ~g~~~~~~~Q~~~i~~i----~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~-~~~~~lil~P~~~L~~q~~~~~~ 110 (394)
T 1fuu_A 39 YGFEEPSAIQQRAIMPI----IEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV-KAPQALMLAPTRELALQIQKVVM 110 (394)
T ss_dssp HTCCSCCHHHHHHHHHH----HHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC-CSCCEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHhhccC-CCCCEEEEcCCHHHHHHHHHHHH
Confidence 56778999998777655 45789999999999999999999988765432 12345555555554444444443
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.60 E-value=6.2e-08 Score=107.12 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=51.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~ 512 (941)
+.|..|||.|.+.+..+. ..++.+++.+|||+|||++++.+++.++...+ ..++++.+++.....|..+++..
T Consensus 24 ~g~~~~~~~Q~~~i~~~~---~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~--~~~~lil~P~~~L~~q~~~~~~~ 96 (367)
T 1hv8_A 24 KGFEKPTDIQMKVIPLFL---NDEYNIVAQARTGSGKTASFAIPLIELVNENN--GIEAIILTPTRELAIQVADEIES 96 (367)
T ss_dssp HTCCSCCHHHHHHHHHHH---HTCSEEEEECCSSSSHHHHHHHHHHHHSCSSS--SCCEEEECSCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHh---CCCCCEEEECCCCChHHHHHHHHHHHHhcccC--CCcEEEEcCCHHHHHHHHHHHHH
Confidence 345679999988766553 34479999999999999999999988765431 24555555555555554444443
No 10
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.58 E-value=1.1e-07 Score=104.14 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=50.1
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHH
Q psy11433 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512 (941)
Q Consensus 434 ~FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~ 512 (941)
.+.|..|||.|.+.+..+ .+|+++++.+|||+|||++++.|++.. ..++++.+++.....|..+++++
T Consensus 11 ~~g~~~l~~~Q~~~i~~i----~~~~~~lv~~~TGsGKT~~~~~~~~~~-------~~~~liv~P~~~L~~q~~~~~~~ 78 (337)
T 2z0m_A 11 EMGFKNFTEVQSKTIPLM----LQGKNVVVRAKTGSGKTAAYAIPILEL-------GMKSLVVTPTRELTRQVASHIRD 78 (337)
T ss_dssp HTTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHH-------TCCEEEECSSHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHH----hcCCCEEEEcCCCCcHHHHHHHHHHhh-------cCCEEEEeCCHHHHHHHHHHHHH
Confidence 366778999998877654 468999999999999999999998763 14566666666655555555544
No 11
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.36 E-value=8.5e-07 Score=93.44 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=63.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
..|..|||.|.+.+.. +.+|+.+++.||||+|||++++.|++..+........++++.++|.....|..++++++
T Consensus 47 ~g~~~~~~~Q~~~i~~----~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 47 AGFQMPTPIQMQAIPV----MLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp TTCCSCCHHHHHHHHH----HHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH----HhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 3566799999877754 45688999999999999999999999988754444568999999999999999998876
No 12
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.35 E-value=6.7e-07 Score=101.92 Aligned_cols=64 Identities=22% Similarity=0.249 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHH
Q psy11433 439 YIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEEL 510 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el 510 (941)
+|||.|.+.+..+.+ + .+++.+|||+|||++++.+++..+... ..++++.+++.....|..+++
T Consensus 9 ~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~~~---~~~~liv~P~~~L~~q~~~~~ 72 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLTKY---GGKVLMLAPTKPLVLQHAESF 72 (494)
T ss_dssp CCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHHHS---CSCEEEECSSHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHhcC---CCeEEEEECCHHHHHHHHHHH
Confidence 489999888876543 3 999999999999999999988776522 134444444444444444443
No 13
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.32 E-value=1.4e-06 Score=91.92 Aligned_cols=77 Identities=18% Similarity=0.010 Sum_probs=63.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCC----CCCceEEEeccccchhHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP----LDVTKLLYCSRTVPEIEKVVEEL 510 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~----~~~~ki~~ct~t~~q~~q~i~el 510 (941)
+.|..|||.|.+.+..+ ..|+++++.||||+|||++++.|++..+...+ ....++++.++|.....|+.+++
T Consensus 47 ~g~~~~~~~Q~~~i~~~----~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~ 122 (242)
T 3fe2_A 47 QNFTEPTAIQAQGWPVA----LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA 122 (242)
T ss_dssp TTCCSCCHHHHHHHHHH----HHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH----hCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHH
Confidence 56778999998877654 47899999999999999999999999887532 23467889999999999999998
Q ss_pred HHHHH
Q psy11433 511 ARLFD 515 (941)
Q Consensus 511 ~~~~~ 515 (941)
+++..
T Consensus 123 ~~~~~ 127 (242)
T 3fe2_A 123 AEYCR 127 (242)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88754
No 14
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.29 E-value=1.4e-06 Score=89.03 Aligned_cols=74 Identities=16% Similarity=0.107 Sum_probs=61.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
+.|.+|||.|.+.+..+ .+|+++++.+|||+|||++++.|++..+.... ...++++.+++.....|..++++.+
T Consensus 21 ~g~~~~~~~Q~~~i~~~----~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~ 94 (206)
T 1vec_A 21 MGWEKPSPIQEESIPIA----LSGRDILARAKNGTGKSGAYLIPLLERLDLKK-DNIQAMVIVPTRELALQVSQICIQV 94 (206)
T ss_dssp TTCCSCCHHHHHHHHHH----HTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS-CSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH----ccCCCEEEECCCCCchHHHHHHHHHHHhcccC-CCeeEEEEeCcHHHHHHHHHHHHHH
Confidence 56778999998776654 46799999999999999999999998765432 3467899999999999998888776
No 15
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.28 E-value=3.5e-06 Score=89.18 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=61.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCC--------CCCceEEEeccccchhHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP--------LDVTKLLYCSRTVPEIEKV 506 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~--------~~~~ki~~ct~t~~q~~q~ 506 (941)
+.|..|||.|.+.+..+ .+|+.+++.||||+|||++++.|++.++.... ....++++.++|.....|.
T Consensus 41 ~g~~~~~~~Q~~~i~~i----~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 116 (253)
T 1wrb_A 41 ASYQRPTPIQKNAIPAI----LEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQI 116 (253)
T ss_dssp TTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHH
Confidence 45667999998877654 45789999999999999999999998876532 1235789999999999999
Q ss_pred HHHHHHH
Q psy11433 507 VEELARL 513 (941)
Q Consensus 507 i~el~~~ 513 (941)
.++++++
T Consensus 117 ~~~~~~~ 123 (253)
T 1wrb_A 117 LSESQKF 123 (253)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998876
No 16
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.26 E-value=1.7e-06 Score=90.13 Aligned_cols=75 Identities=19% Similarity=0.063 Sum_probs=59.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCC-----CCCceEEEeccccchhHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP-----LDVTKLLYCSRTVPEIEKVVEE 509 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~-----~~~~ki~~ct~t~~q~~q~i~e 509 (941)
+.|..|||.|.+.+.. +.+|+++++.||||+|||++++.|++.++.... ....++++.++|.....|+.++
T Consensus 38 ~g~~~~~~~Q~~~i~~----~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 113 (228)
T 3iuy_A 38 VGILKPTPIQSQAWPI----ILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAE 113 (228)
T ss_dssp HTCCSCCHHHHHHHHH----HHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH----HhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHH
Confidence 4566799999877654 457899999999999999999999998775421 1346788999999999999888
Q ss_pred HHHH
Q psy11433 510 LARL 513 (941)
Q Consensus 510 l~~~ 513 (941)
++++
T Consensus 114 ~~~~ 117 (228)
T 3iuy_A 114 CSKY 117 (228)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8775
No 17
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.26 E-value=1.6e-06 Score=89.72 Aligned_cols=74 Identities=16% Similarity=0.122 Sum_probs=61.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
+.|+.|+|.|.+.+..+. +|+.+++.+|||+|||++++.|++..+.... ...++++.+++.....|..++++++
T Consensus 32 ~g~~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (220)
T 1t6n_A 32 CGFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVT-GQVSVLVMCHTRELAFQISKEYERF 105 (220)
T ss_dssp TTCCCCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCT-TCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCchhhhhhHHHHHhhhccC-CCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 557779999988776554 5789999999999999999999998875432 3358999999999999999988876
No 18
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.25 E-value=1.5e-06 Score=90.00 Aligned_cols=75 Identities=13% Similarity=0.075 Sum_probs=62.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLF 514 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~~ 514 (941)
+.|.+|||.|.+.+..+. +|+.+++.||||+|||++++.|++..+.... ...++++.+.|.....|..++++++.
T Consensus 22 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~~ 96 (219)
T 1q0u_A 22 LRFYKPTEIQERIIPGAL----RGESMVGQSQTGTGKTHAYLLPIMEKIKPER-AEVQAVITAPTRELATQIYHETLKIT 96 (219)
T ss_dssp TTCCSCCHHHHHHHHHHH----HTCCEEEECCSSHHHHHHHHHHHHHHCCTTS-CSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhCc-CCceEEEEcCcHHHHHHHHHHHHHHh
Confidence 456679999988876554 5789999999999999999999998876432 34678999999999999999988774
No 19
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.24 E-value=3.7e-06 Score=89.32 Aligned_cols=75 Identities=15% Similarity=0.019 Sum_probs=62.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLF 514 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~~ 514 (941)
+.|..|||.|.+.+..+ .+|+.+++.||||+|||++++.|++..+...+ ...++++.+.|.....|..++++++.
T Consensus 61 ~g~~~~~~~Q~~~i~~i----~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-~~~~~lil~Ptr~L~~q~~~~~~~~~ 135 (249)
T 3ber_A 61 LGWTKPTKIQIEAIPLA----LQGRDIIGLAETGSGKTGAFALPILNALLETP-QRLFALVLTPTRELAFQISEQFEALG 135 (249)
T ss_dssp TTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-CSSCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHH----hCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC-CCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 56677999998776654 46799999999999999999999998776653 34678899999999999999998764
No 20
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.23 E-value=1.9e-06 Score=89.25 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=61.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
+.|..|||.|.+.+..+ .+|+++++.+|||+|||++++.|++.++.... ...++++.+++.....|..++++.+
T Consensus 32 ~g~~~~~~~Q~~~i~~~----~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (224)
T 1qde_A 32 YGFEEPSAIQQRAIMPI----IEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV-KAPQALMLAPTRELALQIQKVVMAL 105 (224)
T ss_dssp HTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC-CSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHH----hcCCCEEEECCCCCcHHHHHHHHHHHHHhccC-CCceEEEEECCHHHHHHHHHHHHHH
Confidence 56778999998777654 46789999999999999999999998875443 3468899999999999998888876
No 21
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.20 E-value=2.7e-06 Score=88.89 Aligned_cols=74 Identities=16% Similarity=0.116 Sum_probs=61.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
+.|..|||.|.+.+.. +..|+++++.+|||+|||++++.|++..+.... ...++++.+++.....|..++++++
T Consensus 42 ~g~~~~~~~Q~~~i~~----~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~ 115 (230)
T 2oxc_A 42 AGFERPSPVQLKAIPL----GRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN-LSTQILILAPTREIAVQIHSVITAI 115 (230)
T ss_dssp TTCCSCCHHHHHHHHH----HHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS-CSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH----HhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC-CCceEEEEeCCHHHHHHHHHHHHHH
Confidence 5567799999877765 456899999999999999999999998765432 2468899999999999999988876
No 22
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.16 E-value=3.9e-06 Score=85.54 Aligned_cols=75 Identities=19% Similarity=0.054 Sum_probs=61.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCC--CCCceEEEeccccchhHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP--LDVTKLLYCSRTVPEIEKVVEELAR 512 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~--~~~~ki~~ct~t~~q~~q~i~el~~ 512 (941)
+.|..|||.|.+.+.. +.+|+++++.+|||+|||++++.|++.++.... ....++++.+++.....|..+++.+
T Consensus 19 ~~~~~~~~~Q~~~i~~----~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 94 (207)
T 2gxq_A 19 RGLTTPTPIQAAALPL----ALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTA 94 (207)
T ss_dssp TTCCSCCHHHHHHHHH----HHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHH----HcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHH
Confidence 4566799999877765 446799999999999999999999999876421 2346789999999999999888877
Q ss_pred H
Q psy11433 513 L 513 (941)
Q Consensus 513 ~ 513 (941)
.
T Consensus 95 ~ 95 (207)
T 2gxq_A 95 V 95 (207)
T ss_dssp H
T ss_pred H
Confidence 6
No 23
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.15 E-value=2.4e-06 Score=89.84 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=61.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
+.|..|||.|.+.+..+ ..|+++++.||||+|||++++.|++..+.... ...++++.+.|.....|..++++++
T Consensus 48 ~g~~~~~~~Q~~ai~~i----~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (237)
T 3bor_A 48 YGFEKPSAIQQRAIIPC----IKGYDVIAQAQSGTGKTATFAISILQQLEIEF-KETQALVLAPTRELAQQIQKVILAL 121 (237)
T ss_dssp HTCCSCCHHHHHHHHHH----HTTCCEEECCCSSHHHHHHHHHHHHHHCCTTS-CSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC-CCceEEEEECcHHHHHHHHHHHHHH
Confidence 56677999998777654 46789999999999999999999998875432 3467899999999999999888876
No 24
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.14 E-value=4.1e-06 Score=89.69 Aligned_cols=75 Identities=20% Similarity=0.122 Sum_probs=62.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCC---CCCceEEEeccccchhHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP---LDVTKLLYCSRTVPEIEKVVEELA 511 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~---~~~~ki~~ct~t~~q~~q~i~el~ 511 (941)
+.|..|+|+|.+.+..+. .|+++++.||||+|||++++.|++..+...+ ....++++.+.|.....|..++++
T Consensus 72 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 147 (262)
T 3ly5_A 72 MGFTNMTEIQHKSIRPLL----EGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLK 147 (262)
T ss_dssp TTCCBCCHHHHHHHHHHH----HTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 557789999987776554 5689999999999999999999998876532 124678999999999999999998
Q ss_pred HH
Q psy11433 512 RL 513 (941)
Q Consensus 512 ~~ 513 (941)
++
T Consensus 148 ~~ 149 (262)
T 3ly5_A 148 EL 149 (262)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 25
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.07 E-value=4.2e-06 Score=99.78 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=65.9
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCC---CCCceEEEeccccchhHHHHHHH
Q psy11433 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP---LDVTKLLYCSRTVPEIEKVVEEL 510 (941)
Q Consensus 434 ~FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~---~~~~ki~~ct~t~~q~~q~i~el 510 (941)
.++|+.|||+|.+.+..+... .|+.+++.||||+|||++++.|++..+...+ ....++++.++|.....|+.+++
T Consensus 38 ~~g~~~~~~~Q~~~i~~il~~--~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~ 115 (579)
T 3sqw_A 38 RMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEV 115 (579)
T ss_dssp TTTCSSCCHHHHHHHHHHHCS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHcc--CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHH
Confidence 467888999998887665421 5789999999999999999999998887653 22468999999999999999999
Q ss_pred HHHHH
Q psy11433 511 ARLFD 515 (941)
Q Consensus 511 ~~~~~ 515 (941)
+++..
T Consensus 116 ~~~~~ 120 (579)
T 3sqw_A 116 KKIHD 120 (579)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88753
No 26
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.03 E-value=9.9e-06 Score=93.06 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=63.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCC----CCceEEEeccccchhHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPL----DVTKLLYCSRTVPEIEKVVEEL 510 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~----~~~ki~~ct~t~~q~~q~i~el 510 (941)
+.|..|+|+|.+.+.. +..|+++++.||||+|||++++.|++..+...+. ...++++.+.|.....|..+++
T Consensus 74 ~g~~~pt~iQ~~ai~~----i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 149 (434)
T 2db3_A 74 SGYKIPTPIQKCSIPV----ISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEA 149 (434)
T ss_dssp TTCCSCCHHHHHHHHH----HHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHH----HhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHH
Confidence 4567899999776654 4578999999999999999999999988765432 2468999999999999999999
Q ss_pred HHHH
Q psy11433 511 ARLF 514 (941)
Q Consensus 511 ~~~~ 514 (941)
+++.
T Consensus 150 ~~~~ 153 (434)
T 2db3_A 150 RKFA 153 (434)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8873
No 27
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.01 E-value=1.2e-05 Score=90.85 Aligned_cols=76 Identities=18% Similarity=0.157 Sum_probs=61.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCC-----------------CCceEEEec
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPL-----------------DVTKLLYCS 497 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~-----------------~~~ki~~ct 497 (941)
..|..|+|.|.+.+. ++..|+++++.||||+|||++++.|++..+...+. ...++++.+
T Consensus 33 ~~~~~~~~~Q~~~i~----~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 108 (417)
T 2i4i_A 33 TRYTRPTPVQKHAIP----IIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLA 108 (417)
T ss_dssp HTCCSCCHHHHHHHH----HHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEEC
T ss_pred CCCCCCCHHHHHHHH----HHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEEC
Confidence 346679999988765 45678999999999999999999999987654321 125799999
Q ss_pred cccchhHHHHHHHHHHH
Q psy11433 498 RTVPEIEKVVEELARLF 514 (941)
Q Consensus 498 ~t~~q~~q~i~el~~~~ 514 (941)
+|.....|..++++.+.
T Consensus 109 Pt~~L~~q~~~~~~~~~ 125 (417)
T 2i4i_A 109 PTRELAVQIYEEARKFS 125 (417)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 99999999999998764
No 28
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.00 E-value=9.5e-06 Score=88.79 Aligned_cols=74 Identities=15% Similarity=0.133 Sum_probs=60.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc--CceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAK--GHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~--~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~ 512 (941)
+-|..|+|+|.+.+. ++..| +++++.||||||||++|+.|++..+.... ...++++.+.|.....|+.+.++.
T Consensus 110 ~g~~~pt~iQ~~ai~----~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~-~~~~~lil~PtreLa~Q~~~~~~~ 184 (300)
T 3fmo_B 110 MGFNRPSKIQENALP----LMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-KYPQCLCLSPTYELALQTGKVIEQ 184 (300)
T ss_dssp TTCCSCCHHHHHHHH----HHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS-CSCCEEEECSSHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHH----HHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC-CCceEEEEcCcHHHHHHHHHHHHH
Confidence 456779999977664 44444 89999999999999999999998876543 345788999999999999888877
Q ss_pred H
Q psy11433 513 L 513 (941)
Q Consensus 513 ~ 513 (941)
+
T Consensus 185 l 185 (300)
T 3fmo_B 185 M 185 (300)
T ss_dssp H
T ss_pred H
Confidence 6
No 29
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.98 E-value=1.7e-05 Score=89.09 Aligned_cols=75 Identities=16% Similarity=0.066 Sum_probs=61.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLF 514 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~~ 514 (941)
+.|+.|||.|.+.+..+. +|+.+++.+|||+|||++++.|++..+.... ...++++.+++.....|..++++.+.
T Consensus 39 ~g~~~~~~~Q~~~i~~i~----~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~ 113 (400)
T 1s2m_A 39 AGFEKPSPIQEEAIPVAI----TGRDILARAKNGTGKTAAFVIPTLEKVKPKL-NKIQALIMVPTRELALQTSQVVRTLG 113 (400)
T ss_dssp TTCCSCCHHHHHHHHHHH----HTCCEEEECCTTSCHHHHHHHHHHHHCCTTS-CSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHh----cCCCEEEECCCCcHHHHHHHHHHHHHHhhcc-CCccEEEEcCCHHHHHHHHHHHHHHh
Confidence 346679999988876554 5789999999999999999999998875432 34678999999999999999888763
No 30
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=97.98 E-value=7.6e-06 Score=91.43 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=61.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLF 514 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~~ 514 (941)
+.|+.|||.|.+.+..+ ..|+.+++.+|||+|||++++.|++..+.... ...++++.+++.....|..++++++.
T Consensus 26 ~g~~~~~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~ 100 (391)
T 1xti_A 26 CGFEHPSEVQHECIPQA----ILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT-GQVSVLVMCHTRELAFQISKEYERFS 100 (391)
T ss_dssp HSCCSCCHHHHHHHHHH----TTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT-TCCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHH----hcCCcEEEECCCCCcHHHHHHHHHHHhhcccC-CCeeEEEECCCHHHHHHHHHHHHHHH
Confidence 45677999998877554 45799999999999999999999998765432 24678999999999999999988774
No 31
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=97.98 E-value=8.1e-06 Score=96.61 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=65.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCC---CCceEEEeccccchhHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPL---DVTKLLYCSRTVPEIEKVVEELA 511 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~---~~~ki~~ct~t~~q~~q~i~el~ 511 (941)
+.|..|||+|.+.+..+.. ..|+.+++.||||+|||++++.|++.++...+. ...++++.++|.....|+.++++
T Consensus 90 ~g~~~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~ 167 (563)
T 3i5x_A 90 MEFPGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVK 167 (563)
T ss_dssp TCCSSCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHH
Confidence 5677899999887766541 147899999999999999999999998876542 23579999999999999999999
Q ss_pred HHHH
Q psy11433 512 RLFD 515 (941)
Q Consensus 512 ~~~~ 515 (941)
++..
T Consensus 168 ~~~~ 171 (563)
T 3i5x_A 168 KIHD 171 (563)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
No 32
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.97 E-value=9.2e-06 Score=90.54 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=61.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
+.|..|||.|.+.+..+... .++++++.||||+|||++++.+++..+.... ...++++.+++.....|..++++++
T Consensus 23 ~~~~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~ 98 (395)
T 3pey_A 23 MKFQKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPED-ASPQAICLAPSRELARQTLEVVQEM 98 (395)
T ss_dssp TTCCSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTC-CSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCC-CCccEEEECCCHHHHHHHHHHHHHH
Confidence 45667999998877665432 2389999999999999999999998775432 3467899999999999999988876
No 33
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.92 E-value=1.2e-05 Score=90.37 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=61.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLF 514 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~~ 514 (941)
+.|..|+|.|.+.+..+.+. .++++++.||||+|||++++.|++..+.... ...++++.+++.....|..+.++++.
T Consensus 43 ~g~~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~ 119 (412)
T 3fht_A 43 MGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-KYPQCLCLSPTYELALQTGKVIEQMG 119 (412)
T ss_dssp TTCCSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTS-CSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcC-CCCCEEEECCCHHHHHHHHHHHHHHH
Confidence 55677999998887665431 2589999999999999999999998776543 34578999999999999988888763
No 34
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.92 E-value=1.8e-05 Score=89.30 Aligned_cols=74 Identities=18% Similarity=0.177 Sum_probs=61.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
+.|..|||.|.+.+..+ ..|+++++.||||+|||++++.|++..+.... ...++++.+++.....|..++++++
T Consensus 55 ~g~~~~~~~Q~~ai~~i----~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~ 128 (410)
T 2j0s_A 55 YGFEKPSAIQQRAIKQI----IKGRDVIAQSQSGTGKTATFSISVLQCLDIQV-RETQALILAPTRELAVQIQKGLLAL 128 (410)
T ss_dssp HTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHTCCTTS-CSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHH----hCCCCEEEECCCCCCchHHHHHHHHHHHhhcc-CCceEEEEcCcHHHHHHHHHHHHHH
Confidence 56778999998877654 46789999999999999999999998765322 3468899999999999999999876
No 35
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=97.89 E-value=1.7e-05 Score=89.22 Aligned_cols=74 Identities=18% Similarity=0.155 Sum_probs=61.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
+.|..|||.|.+.+..+ ..|+.+++.+|||+|||++++.+++..+.... ...++++.+++.....|..++++.+
T Consensus 58 ~~~~~~~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 58 YGFEKPSAIQQRAILPC----IKGYDVIAQAQSGTGKTATFAISILQQIELDL-KATQALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp TTCCSCCHHHHHHHHHH----HTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS-CSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHhHHH----hCCCCEEEECCCCCcccHHHHHHHHHHHhhcC-CceeEEEEeChHHHHHHHHHHHHHH
Confidence 66778999998877554 45889999999999999999999998775432 3467899999999999999988876
No 36
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=97.88 E-value=1.7e-05 Score=90.02 Aligned_cols=71 Identities=20% Similarity=0.140 Sum_probs=59.4
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 434 ~FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
.|+| +|+|.|.+.+..+ .+|+++++.||||+|||++++.+++..+.. ..++++.++|.....|..++++.+
T Consensus 17 ~~~~-~~~~~Q~~~i~~i----~~~~~~lv~apTGsGKT~~~l~~~~~~~~~----~~~~lil~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 17 KFGK-DLTGYQRLWAKRI----VQGKSFTMVAPTGVGKTTFGMMTALWLARK----GKKSALVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp HHSS-CCCHHHHHHHHHH----TTTCCEECCSCSSSSHHHHHHHHHHHHHTT----TCCEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHH----hcCCCEEEEeCCCCCHHHHHHHHHHHHhcC----CCEEEEEECCHHHHHHHHHHHHHH
Confidence 3677 4999997776654 467899999999999999999998887633 368999999999999999999885
No 37
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.81 E-value=2.1e-05 Score=94.05 Aligned_cols=70 Identities=21% Similarity=0.173 Sum_probs=59.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHH
Q psy11433 433 VFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512 (941)
Q Consensus 433 ~~FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~ 512 (941)
-.|.|..|||.|.+.+..+ .+|+.+++.+|||+|||++|+.|++.. ..++++.+++...+.|.++.++.
T Consensus 38 ~~fg~~~~rp~Q~~~i~~i----l~g~d~lv~~pTGsGKTl~~~lpal~~-------~g~~lVisP~~~L~~q~~~~l~~ 106 (591)
T 2v1x_A 38 NVFKLEKFRPLQLETINVT----MAGKEVFLVMPTGGGKSLCYQLPALCS-------DGFTLVICPLISLMEDQLMVLKQ 106 (591)
T ss_dssp HTSCCCSCCTTHHHHHHHH----HTTCCEEEECCTTSCTTHHHHHHHHTS-------SSEEEEECSCHHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHH----HcCCCEEEEECCCChHHHHHHHHHHHc-------CCcEEEEeCHHHHHHHHHHHHHh
Confidence 3589999999998777655 458999999999999999999999751 25789999999999999988876
Q ss_pred H
Q psy11433 513 L 513 (941)
Q Consensus 513 ~ 513 (941)
+
T Consensus 107 ~ 107 (591)
T 2v1x_A 107 L 107 (591)
T ss_dssp H
T ss_pred c
Confidence 4
No 38
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=97.79 E-value=4.2e-05 Score=89.41 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCC-CCceEEEeccccchhHHHHHHHHHHHH
Q psy11433 439 YIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPL-DVTKLLYCSRTVPEIEKVVEELARLFD 515 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~-~~~ki~~ct~t~~q~~q~i~el~~~~~ 515 (941)
+|||.|.+.+..+ ..|+++++.+|||+|||++++.|++..+...+. ...++++.++|.+...|..++++++..
T Consensus 4 ~~~~~Q~~~i~~~----~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 77 (555)
T 3tbk_A 4 KPRNYQLELALPA----KKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFE 77 (555)
T ss_dssp CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH----hCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 3999998877655 467999999999999999999999988876531 146788999999999999999988753
No 39
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=97.75 E-value=2e-05 Score=91.26 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=61.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLF 514 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~~ 514 (941)
+.|..|+|+|.+.+..+... .++++++.||||+|||++|+.|++..+.... ...++++.++|.....|..+.++++.
T Consensus 110 ~g~~~p~~~Q~~ai~~il~~--~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~-~~~~~lil~Pt~~La~Q~~~~~~~~~ 186 (479)
T 3fmp_B 110 MGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-KYPQCLCLSPTYELALQTGKVIEQMG 186 (479)
T ss_dssp TTCCSCCHHHHHHHHHHTSB--SCCEEEEECCSSSSHHHHHHHHHHTTCCTTS-CSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcC--CCCcEEEEcCCCCchhHHHHHHHHHHHhhcC-CCCcEEEEeChHHHHHHHHHHHHHHH
Confidence 55677999998877655431 2489999999999999999999998765443 23578999999999999988887764
No 40
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.74 E-value=2.9e-05 Score=79.25 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCC--CCCceEEEeccccchhHH-HHHHHHHH
Q psy11433 439 YIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP--LDVTKLLYCSRTVPEIEK-VVEELARL 513 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~--~~~~ki~~ct~t~~q~~q-~i~el~~~ 513 (941)
+|||.|.+.+..+. .++++++.+|||+|||++++.+++..+.... ....++++.+++.....| ..+++..+
T Consensus 33 ~l~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 33 QLRPYQMEVAQPAL----EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCHHHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CchHHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 59999988887654 5789999999999999999999987765421 123577888888888777 55556554
No 41
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.69 E-value=9.1e-05 Score=91.17 Aligned_cols=76 Identities=17% Similarity=0.133 Sum_probs=67.6
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhc--CceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHH
Q psy11433 434 FFPYEYIYPEQYAYMVELKKALDAK--GHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELA 511 (941)
Q Consensus 434 ~FPy~~py~~Q~~~M~~v~~al~~~--~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~ 511 (941)
.+|| +|++.|.+.+..+.+.+..+ .+.++.||||+|||++++.|++..+... .++++.+.|.....|..++++
T Consensus 364 ~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g----~qvlvlaPtr~La~Q~~~~l~ 438 (780)
T 1gm5_A 364 SLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG----FQTAFMVPTSILAIQHYRRTV 438 (780)
T ss_dssp HSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT----SCEEEECSCHHHHHHHHHHHH
T ss_pred hCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC----CeEEEEeCcHHHHHHHHHHHH
Confidence 5899 69999999999999988876 4899999999999999999999887654 578999999999999999998
Q ss_pred HHH
Q psy11433 512 RLF 514 (941)
Q Consensus 512 ~~~ 514 (941)
+..
T Consensus 439 ~~~ 441 (780)
T 1gm5_A 439 ESF 441 (780)
T ss_dssp HHH
T ss_pred HHh
Confidence 774
No 42
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=97.64 E-value=8.1e-05 Score=87.18 Aligned_cols=72 Identities=18% Similarity=0.210 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCC-CCceEEEeccccchhHHHHHHHHHHH
Q psy11433 439 YIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPL-DVTKLLYCSRTVPEIEKVVEELARLF 514 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~-~~~ki~~ct~t~~q~~q~i~el~~~~ 514 (941)
+|||.|.+.+..+ ..|+++++.+|||+|||++++.|++..+...+. ...++++.+++.+...|..++++++.
T Consensus 7 ~~~~~Q~~~i~~~----~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 79 (556)
T 4a2p_A 7 KARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 79 (556)
T ss_dssp -CCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH----HcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 4999998876655 457899999999999999999999988776532 14678899999999999999998875
No 43
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=97.63 E-value=8.2e-05 Score=90.24 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=62.0
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCC-CCceEEEeccccchhHHHHHHHHH
Q psy11433 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPL-DVTKLLYCSRTVPEIEKVVEELAR 512 (941)
Q Consensus 434 ~FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~-~~~ki~~ct~t~~q~~q~i~el~~ 512 (941)
.|.|.+|||.|.+.+..+ ..|+++|+.+|||+|||++++.|++..+...+. ...++++.+.|.+...|..+++++
T Consensus 8 ~~g~~~lr~~Q~~~i~~~----l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~ 83 (696)
T 2ykg_A 8 LYSPFKPRNYQLELALPA----MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSK 83 (696)
T ss_dssp TTC--CCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCCCccHHHHHHHHHH----HcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 466778999998887654 458999999999999999999999988766431 225788999999999999999988
Q ss_pred HH
Q psy11433 513 LF 514 (941)
Q Consensus 513 ~~ 514 (941)
+.
T Consensus 84 ~~ 85 (696)
T 2ykg_A 84 YF 85 (696)
T ss_dssp HT
T ss_pred Hh
Confidence 74
No 44
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.59 E-value=8.3e-05 Score=87.64 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=57.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHH
Q psy11433 433 VFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512 (941)
Q Consensus 433 ~~FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~ 512 (941)
-.|.|+.+||.|.+.+..+ .+|+.+++.+|||+|||++|+.|++.. ..++++.+.+...+.|.++++..
T Consensus 19 ~~~g~~~~r~~Q~~~i~~i----l~g~d~lv~apTGsGKTl~~~lp~l~~-------~g~~lvi~P~~aL~~q~~~~l~~ 87 (523)
T 1oyw_A 19 ETFGYQQFRPGQEEIIDTV----LSGRDCLVVMPTGGGKSLCYQIPALLL-------NGLTVVVSPLISLMKDQVDQLQA 87 (523)
T ss_dssp HTTCCSSCCTTHHHHHHHH----HTTCCEEEECSCHHHHHHHHHHHHHHS-------SSEEEEECSCHHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHH----HcCCCEEEECCCCcHHHHHHHHHHHHh-------CCCEEEECChHHHHHHHHHHHHH
Confidence 3588999999997776654 468899999999999999999998742 14688889999998888888775
Q ss_pred H
Q psy11433 513 L 513 (941)
Q Consensus 513 ~ 513 (941)
.
T Consensus 88 ~ 88 (523)
T 1oyw_A 88 N 88 (523)
T ss_dssp T
T ss_pred c
Confidence 4
No 45
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.51 E-value=0.0002 Score=77.08 Aligned_cols=68 Identities=15% Similarity=0.120 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 439 YIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
+|||.|.+.+..+.+ ++.+++.+|||+|||++++.++...+.... .++++.+++.+...|..+++.+.
T Consensus 113 ~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~---~~~lil~Pt~~L~~q~~~~l~~~ 180 (282)
T 1rif_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENYE---GKILIIVPTTALTTQMADDFVDY 180 (282)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHCS---SEEEEECSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcCC---CeEEEEECCHHHHHHHHHHHHHh
Confidence 489999888776544 367889999999999999988887766432 47889999999999999998765
No 46
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=97.50 E-value=0.00022 Score=88.21 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=60.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCC-CCceEEEeccccchhHHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPL-DVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~-~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
+++..|||.|.+.+..+ ..|+.+|+.+|||+|||++++.|++..+...+. ...++++.+++.+...|..+++++.
T Consensus 244 ~g~~~l~~~Q~~~i~~~----l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 244 YETKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp ----CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHH----HhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 44667999998876654 467899999999999999999999988876531 1467888999999999999999887
Q ss_pred H
Q psy11433 514 F 514 (941)
Q Consensus 514 ~ 514 (941)
.
T Consensus 320 ~ 320 (797)
T 4a2q_A 320 F 320 (797)
T ss_dssp H
T ss_pred c
Confidence 4
No 47
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.00021 Score=90.54 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=62.4
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHH
Q psy11433 433 VFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512 (941)
Q Consensus 433 ~~FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~ 512 (941)
-.|||+ |+|.|.+.+.. +..|+++++.||||+|||++++.+++..+... .+++|.+.+.....|..+++..
T Consensus 81 ~~~~f~-L~~~Q~eai~~----l~~g~~vLV~apTGSGKTlva~lai~~~l~~g----~rvL~l~PtkaLa~Q~~~~l~~ 151 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISC----IDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK----QRVIYTSPIKALSNQKYRELLA 151 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHH----HHHTCEEEEECCTTSCHHHHHHHHHHHHHHTT----CEEEEEESSHHHHHHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHH----HHcCCCEEEECCCCCChHHHHHHHHHHHhccC----CeEEEECChHHHHHHHHHHHHH
Confidence 358887 99999877765 56789999999999999999999988877543 6899999999999999999987
Q ss_pred HH
Q psy11433 513 LF 514 (941)
Q Consensus 513 ~~ 514 (941)
..
T Consensus 152 ~~ 153 (1010)
T 2xgj_A 152 EF 153 (1010)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 48
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=97.43 E-value=5e-05 Score=89.07 Aligned_cols=75 Identities=12% Similarity=0.136 Sum_probs=59.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 436 PYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 436 Py~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
.|..|++.|.+.+..+.+. .++++++.||||+|||++++.+++..+.... ...++++.+++.....|..++++.+
T Consensus 138 g~~~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~-~~~~vLvl~P~~~L~~Q~~~~~~~~ 212 (508)
T 3fho_A 138 XXXXXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASV-PKPQAICLAPSRELARQIMDVVTEM 212 (508)
T ss_dssp -CEECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTC-CSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCC-CCceEEEEECcHHHHHHHHHHHHHh
Confidence 4456889998777655432 2489999999999999999999998775543 3468999999999999999988876
No 49
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=97.38 E-value=0.00033 Score=88.65 Aligned_cols=72 Identities=17% Similarity=0.168 Sum_probs=60.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHH
Q psy11433 433 VFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512 (941)
Q Consensus 433 ~~FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~ 512 (941)
..|||+ ++|.|.+.+. ++.+|+.+++.||||+|||++++.+++..+... .++++.+++.....|..+++..
T Consensus 34 ~~~~f~-l~~~Q~~aI~----~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g----~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 34 RSWPFE-LDTFQKEAVY----HLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNM----TKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp CCCSSC-CCHHHHHHHH----HHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTT----CEEEEEESCGGGHHHHHHHHHT
T ss_pred HhCCCC-CCHHHHHHHH----HHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcC----CeEEEEeCCHHHHHHHHHHHHH
Confidence 468997 8999976654 556789999999999999999999888776543 5899999999999999999886
Q ss_pred H
Q psy11433 513 L 513 (941)
Q Consensus 513 ~ 513 (941)
.
T Consensus 105 ~ 105 (997)
T 4a4z_A 105 T 105 (997)
T ss_dssp T
T ss_pred H
Confidence 5
No 50
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.00024 Score=90.78 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=62.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHH
Q psy11433 433 VFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512 (941)
Q Consensus 433 ~~FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~ 512 (941)
..|||+ |+|.|.+.+.. +..|+.+++.||||+|||++++.|++..+... .+++|.++|.....|..++++.
T Consensus 179 ~~~~f~-ltp~Q~~AI~~----i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g----~rvlvl~PtraLa~Q~~~~l~~ 249 (1108)
T 3l9o_A 179 RTYPFT-LDPFQDTAISC----IDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK----QRVIYTSPIKALSNQKYRELLA 249 (1108)
T ss_dssp SCCSSC-CCHHHHHHHHH----HTTTCCEEEECCSSSHHHHHHHHHHHHHHHTT----CEEEEEESSHHHHHHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHH----HHcCCCEEEECCCCCChHHHHHHHHHHHHhcC----CeEEEEcCcHHHHHHHHHHHHH
Confidence 457886 99999776654 57889999999999999999999999887543 5899999999999999999987
Q ss_pred HH
Q psy11433 513 LF 514 (941)
Q Consensus 513 ~~ 514 (941)
..
T Consensus 250 ~~ 251 (1108)
T 3l9o_A 250 EF 251 (1108)
T ss_dssp HT
T ss_pred Hh
Confidence 53
No 51
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=97.36 E-value=0.00031 Score=90.16 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=66.4
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhcC--ceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHH
Q psy11433 433 VFFPYEYIYPEQYAYMVELKKALDAKG--HCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEEL 510 (941)
Q Consensus 433 ~~FPy~~py~~Q~~~M~~v~~al~~~~--~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el 510 (941)
-.|||+ ++|.|.+.+..+.+.+..|+ .+++.+|||+|||++++.+++...... .++++.++|.....|..+++
T Consensus 598 ~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g----~~vlvlvPt~~La~Q~~~~~ 672 (1151)
T 2eyq_A 598 DSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH----KQVAVLVPTTLLAQQHYDNF 672 (1151)
T ss_dssp HTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT----CEEEEECSSHHHHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC----CeEEEEechHHHHHHHHHHH
Confidence 368997 79999999999999998887 899999999999999999888766543 58889999999999999988
Q ss_pred HHH
Q psy11433 511 ARL 513 (941)
Q Consensus 511 ~~~ 513 (941)
+..
T Consensus 673 ~~~ 675 (1151)
T 2eyq_A 673 RDR 675 (1151)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 52
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=97.35 E-value=0.00026 Score=82.52 Aligned_cols=68 Identities=15% Similarity=0.120 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 439 YIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
+|||.|.+.+..+.+ ++.+++.+|||+|||++++.++...+...+ .++++.+++.....|..+++.+.
T Consensus 113 ~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~---~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENYE---GKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHCS---SEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCCC---CeEEEEECcHHHHHHHHHHHHHh
Confidence 499999888877654 578999999999999999999888776542 48999999999999999999765
No 53
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=97.21 E-value=0.00016 Score=87.62 Aligned_cols=72 Identities=15% Similarity=0.227 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCC--CCCceEEEeccccchhHHH-HHHHHHHH
Q psy11433 439 YIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP--LDVTKLLYCSRTVPEIEKV-VEELARLF 514 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~--~~~~ki~~ct~t~~q~~q~-i~el~~~~ 514 (941)
+|||.|.+.+..+. .|+.+++.+|||+|||++++.|++..+.... ....++++.+++++...|. .+++++..
T Consensus 7 ~l~~~Q~~~i~~il----~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 7 QLRPYQMEVAQPAL----EGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp CCCHHHHHHHHHHH----SSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CccHHHHHHHHHHH----hCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 38999988777654 4889999999999999999999998765431 1125678889999999999 89998874
No 54
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=97.21 E-value=0.00037 Score=87.74 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=60.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCC-CCceEEEeccccchhHHHHHHHHHHHH
Q psy11433 437 YEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPL-DVTKLLYCSRTVPEIEKVVEELARLFD 515 (941)
Q Consensus 437 y~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~-~~~ki~~ct~t~~q~~q~i~el~~~~~ 515 (941)
+..|||.|.+.+..+ .+|+.+++.+|||+|||++++.|++..+...+. ...++++.+++.+...|..+++++...
T Consensus 246 ~~~~r~~Q~~ai~~i----l~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH----HcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 567999998877655 467999999999999999999999887765421 146788899999999999999988753
No 55
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=97.20 E-value=0.00035 Score=85.23 Aligned_cols=73 Identities=18% Similarity=0.157 Sum_probs=60.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
++|+++||.|.+.+..+ +.+++++++.||||+|||+++..+++..+..++ .+++|.+++.....|..++++++
T Consensus 26 ~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~---~~il~i~P~r~La~q~~~~~~~~ 98 (715)
T 2va8_A 26 RGIKKLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNG---GKAIYVTPLRALTNEKYLTFKDW 98 (715)
T ss_dssp TSCCBCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC---SEEEEECSCHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCC---CeEEEEeCcHHHHHHHHHHHHHh
Confidence 67888999998877652 446899999999999999999999997766433 68999999999988888888543
No 56
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=97.19 E-value=0.00025 Score=86.65 Aligned_cols=73 Identities=19% Similarity=0.193 Sum_probs=60.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
++|+.+||.|.+.+..+ +.+|+++++.||||+|||+++..+++..+..++ .+++|.+++.....|..++++++
T Consensus 19 ~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~---~~~l~i~P~raLa~q~~~~~~~l 91 (720)
T 2zj8_A 19 RGIESFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQG---GKAVYIVPLKALAEEKFQEFQDW 91 (720)
T ss_dssp TTCCBCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHC---SEEEEECSSGGGHHHHHHHTGGG
T ss_pred CCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC---CEEEEEcCcHHHHHHHHHHHHHH
Confidence 67888999998777652 456899999999999999999999997665332 68999999999999999988644
No 57
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.13 E-value=0.00089 Score=88.93 Aligned_cols=72 Identities=15% Similarity=0.237 Sum_probs=60.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 437 YEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 437 y~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
|+.+.|.|.+....++ .++.++++.||||+|||+++..|++..+..++ ..+++|.+.+.....|..+++...
T Consensus 924 f~~fnpiQ~q~~~~l~---~~~~nvlv~APTGSGKTliaelail~~l~~~~--~~kavyi~P~raLa~q~~~~~~~~ 995 (1724)
T 4f92_B 924 FPFFNPIQTQVFNTVY---NSDDNVFVGAPTGSGKTICAEFAILRMLLQSS--EGRCVYITPMEALAEQVYMDWYEK 995 (1724)
T ss_dssp CSBCCHHHHHHHHHHH---SCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT--TCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh---cCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC--CCEEEEEcChHHHHHHHHHHHHHH
Confidence 5568999987766654 47789999999999999999999997776542 368999999999999999998764
No 58
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=97.08 E-value=0.00029 Score=85.84 Aligned_cols=71 Identities=21% Similarity=0.167 Sum_probs=56.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
++|+++||.|.+.+.. +.+|+++++.||||+|||+++..+++..+... .+++|.+.+.....|..++++++
T Consensus 21 ~g~~~l~~~Q~~~i~~----i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----~~~l~i~P~r~La~q~~~~~~~~ 91 (702)
T 2p6r_A 21 EGIEELFPPQAEAVEK----VFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG----GKSLYVVPLRALAGEKYESFKKW 91 (702)
T ss_dssp C---CCCCCCHHHHHH----HTTCSCEEEECSSHHHHHHHHHHHHHHHHHTT----CCEEEEESSHHHHHHHHHHHTTT
T ss_pred CCCCCCCHHHHHHHHH----HhCCCcEEEEcCCccHHHHHHHHHHHHHHHhC----CcEEEEeCcHHHHHHHHHHHHHH
Confidence 6777899999777766 45689999999999999999999999776532 58899999999999988888543
No 59
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.08 E-value=0.00061 Score=87.06 Aligned_cols=71 Identities=20% Similarity=0.165 Sum_probs=58.8
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 434 ~FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
.++|+ |+|.|.+.+..+ ..|+.+++.||||+|||++++.+++..+.. ..++++.++|.....|+.+.++.+
T Consensus 74 ~~gf~-pt~iQ~~ai~~i----l~g~dvlv~ApTGSGKTl~~l~~il~~~~~----~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGKD-LTGYQRLWAKRI----VQGKSFTMVAPTGVGKTTFGMMTALWLARK----GKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSSC-CCHHHHHHHHHH----TTTCCEEECCSTTCCHHHHHHHHHHHHHTT----TCCEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCCC-CCHHHHHHHHHH----HcCCCEEEEeCCCCcHHHHHHHHHHHHHhc----CCeEEEEechHHHHHHHHHHHHHh
Confidence 36774 999997766554 458999999999999999999988877733 368999999999999999998874
No 60
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.02 E-value=0.0011 Score=88.07 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=64.4
Q ss_pred cCC-CCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCC-------CCCceEEEeccccchhHH
Q psy11433 434 FFP-YEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP-------LDVTKLLYCSRTVPEIEK 505 (941)
Q Consensus 434 ~FP-y~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~-------~~~~ki~~ct~t~~q~~q 505 (941)
.|| |+++.++|.+.... ++.+++++++-||||+|||+++..+++..+..+. .+..+++|.+.+.+...|
T Consensus 73 ~f~g~~~ln~iQs~~~~~---al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e 149 (1724)
T 4f92_B 73 GFEGFKTLNRIQSKLYRA---ALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 149 (1724)
T ss_dssp TCTTCSBCCHHHHHTHHH---HHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHH
T ss_pred hcCCCCCCCHHHHHHHHH---HHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHH
Confidence 365 88899999765543 4568999999999999999999999998876532 245789999999999999
Q ss_pred HHHHHHHHH
Q psy11433 506 VVEELARLF 514 (941)
Q Consensus 506 ~i~el~~~~ 514 (941)
..+++.+..
T Consensus 150 ~~~~l~~~~ 158 (1724)
T 4f92_B 150 MVGSFGKRL 158 (1724)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 61
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.02 E-value=0.0006 Score=81.21 Aligned_cols=74 Identities=14% Similarity=0.126 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CceeeeCCCCCchhHHHHHHHHHHHhcC-----CCCCceEEEeccccchhHHHH-HHHH
Q psy11433 439 YIYPEQYAYMVELKKALDAK-GHCLLEMPSGTGKTTSLLSLIVAYMNAH-----PLDVTKLLYCSRTVPEIEKVV-EELA 511 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al~~~-~~~iiEaPTGTGKTls~L~~al~~~~~~-----~~~~~ki~~ct~t~~q~~q~i-~el~ 511 (941)
.+||.|.+.+..+.+++..| +.+++.+|||+|||++.+..+...+... .....++++.+++.....|.. ++++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 59999999999999999877 5689999999999999776665544433 113467888999888888877 5554
Q ss_pred H
Q psy11433 512 R 512 (941)
Q Consensus 512 ~ 512 (941)
.
T Consensus 258 ~ 258 (590)
T 3h1t_A 258 P 258 (590)
T ss_dssp T
T ss_pred h
Confidence 3
No 62
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.01 E-value=0.0009 Score=85.24 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=59.6
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 434 ~FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
.++|+ | |.|.+.+..+ ..|+++++.||||+|||+ +..|++.++...+ .++++.++|.....|+.++++.+
T Consensus 53 ~~g~~-p-~iQ~~ai~~i----l~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~---~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRI----LRKESFAATAPTGVGKTS-FGLAMSLFLALKG---KRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHH----HTTCCEECCCCBTSCSHH-HHHHHHHHHHTTS---CCEEEEESCHHHHHHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHH----HhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcC---CeEEEEeccHHHHHHHHHHHHHH
Confidence 46787 8 9997777654 468999999999999999 8888887776543 68999999999999999999887
Q ss_pred HH
Q psy11433 514 FD 515 (941)
Q Consensus 514 ~~ 515 (941)
..
T Consensus 123 ~~ 124 (1054)
T 1gku_B 123 AE 124 (1054)
T ss_dssp HT
T ss_pred Hh
Confidence 53
No 63
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.00 E-value=0.0008 Score=70.84 Aligned_cols=66 Identities=20% Similarity=0.138 Sum_probs=48.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~ 512 (941)
|++ +++|.|.+.+..+ .+++.+++.+|||+|||..++.++... ..++++.+++.....|..+++.+
T Consensus 90 ~~~-~l~~~Q~~ai~~~----~~~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 90 AEI-SLRDYQEKALERW----LVDKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp CCC-CCCHHHHHHHHHH----TTTSEEEEEESSSTTHHHHHHHHHHHS-------CSCEEEEESSHHHHHHHHHHHGG
T ss_pred CCC-CcCHHHHHHHHHH----HhCCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEeCCHHHHHHHHHHHHh
Confidence 444 4999998877654 345679999999999999988876552 24677777777777777776654
No 64
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.94 E-value=0.00094 Score=77.00 Aligned_cols=66 Identities=20% Similarity=0.149 Sum_probs=53.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~ 512 (941)
||++ |||.|.+.+..+ ..++.+++.+|||+|||++++.++... ..++++.+++.....|..+++.+
T Consensus 90 ~~~~-l~~~Q~~ai~~i----~~~~~~ll~~~TGsGKT~~~l~~i~~~-------~~~~Lvl~P~~~L~~Q~~~~~~~ 155 (472)
T 2fwr_A 90 AEIS-LRDYQEKALERW----LVDKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGI 155 (472)
T ss_dssp CCCC-BCHHHHHHHHHH----TTTTEEEEECCTTSCHHHHHHHHHHHH-------CSCEEEEESSHHHHHHHHHHGGG
T ss_pred CCCC-cCHHHHHHHHHH----HhcCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEECCHHHHHHHHHHHHh
Confidence 4554 999998877654 445679999999999999999987754 25688888998888898888876
No 65
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=96.82 E-value=0.0025 Score=77.97 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHHHHH
Q psy11433 439 YIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY 516 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~~~~ 516 (941)
.|||+|..-+-.+ -.|+ |.||+||+|||++++.|++..+.. ...+.+.|.|.-...|..+++.++..+
T Consensus 83 ~pt~VQ~~~ip~l----l~G~--Iaea~TGeGKTlaf~LP~~l~aL~----g~~vlVltptreLA~qd~e~~~~l~~~ 150 (844)
T 1tf5_A 83 FPFKVQLMGGVAL----HDGN--IAEMKTGEGKTLTSTLPVYLNALT----GKGVHVVTVNEYLASRDAEQMGKIFEF 150 (844)
T ss_dssp CCCHHHHHHHHHH----HTTS--EEECCTTSCHHHHHHHHHHHHHTT----SSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHhhHHH----hCCC--EEEccCCcHHHHHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 4889997665443 3555 999999999999999999854332 246788888888889999999988765
No 66
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=96.69 E-value=0.00059 Score=78.99 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=48.2
Q ss_pred HHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHH
Q psy11433 452 KKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELA 511 (941)
Q Consensus 452 ~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~ 511 (941)
-+++.+|+++++.||||+|||++++.|++..+...+ .+++++++|.....|+.+++.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~---~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQR---LRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTT---CCEEEEECSHHHHHHHHHHTT
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCC---CcEEEECchHHHHHHHHHHhc
Confidence 445668899999999999999999999998766543 689999999998888888775
No 67
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=96.65 E-value=0.0022 Score=81.09 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHHHhc----------CceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHH
Q psy11433 439 YIYPEQYAYMVELKKALDAK----------GHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVE 508 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al~~~----------~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~ 508 (941)
.|||.|.+.+..+.+.+..| +.+++.+|||||||++. ++++.++...+ ...++++.+++.....|..+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~-~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELD-FIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCT-TCCEEEEEECGGGCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcC-CCceEEEEeCcHHHHHHHHH
Confidence 38999999999999988743 67999999999999997 55555554432 23588999999888889888
Q ss_pred HHHHH
Q psy11433 509 ELARL 513 (941)
Q Consensus 509 el~~~ 513 (941)
++...
T Consensus 349 ~f~~f 353 (1038)
T 2w00_A 349 EYQRF 353 (1038)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 87654
No 68
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=96.60 E-value=0.00075 Score=77.71 Aligned_cols=56 Identities=23% Similarity=0.274 Sum_probs=47.4
Q ss_pred HHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 455 LDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 455 l~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
+.+|+++++.||||+|||++++.|++..+..++ .++++.++|.....|..++++.+
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~---~~~lil~Ptr~La~Q~~~~l~~~ 60 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRR---LRTLVLAPTRVVLSEMKEAFHGL 60 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHTTTS
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcC---CeEEEEcchHHHHHHHHHHHhcC
Confidence 457899999999999999999999998766543 68899999999988888887643
No 69
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=96.57 E-value=0.00024 Score=86.13 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=54.1
Q ss_pred CCCCHHHH-----HHHHHHH--HHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHH
Q psy11433 438 EYIYPEQY-----AYMVELK--KALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEEL 510 (941)
Q Consensus 438 ~~py~~Q~-----~~M~~v~--~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el 510 (941)
..|+++|. +.+..+. +++..|+++++.||||+|||++++.|++..+...+ .++++.++|.....|..+.+
T Consensus 214 ~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~---~~~lilaPTr~La~Q~~~~l 290 (673)
T 2wv9_A 214 AYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKR---LRTAVLAPTRVVAAEMAEAL 290 (673)
T ss_dssp CEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHT
T ss_pred CccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC---CcEEEEccHHHHHHHHHHHH
Confidence 35788887 3333222 23348999999999999999999999997765543 68899999999888888877
Q ss_pred HH
Q psy11433 511 AR 512 (941)
Q Consensus 511 ~~ 512 (941)
+.
T Consensus 291 ~~ 292 (673)
T 2wv9_A 291 RG 292 (673)
T ss_dssp TT
T ss_pred hc
Confidence 64
No 70
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=96.56 E-value=0.0036 Score=76.49 Aligned_cols=68 Identities=16% Similarity=0.104 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHHHHHH
Q psy11433 440 IYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYY 517 (941)
Q Consensus 440 py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~~~~~ 517 (941)
|||+|..-.-.+ -.|+ |.||+||||||++++.|++..+.. ...+.+.|.|.-...|..+++.++..++
T Consensus 75 p~~VQ~~~i~~l----l~G~--Iaem~TGsGKTlaf~LP~l~~~l~----g~~vlVltPTreLA~Q~~e~~~~l~~~l 142 (853)
T 2fsf_A 75 HFDVQLLGGMVL----NERC--IAEMRTGEGKTLTATLPAYLNALT----GKGVHVVTVNDYLAQRDAENNRPLFEFL 142 (853)
T ss_dssp CCHHHHHHHHHH----HSSE--EEECCTTSCHHHHHHHHHHHHHTT----SSCCEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHhhcccc----cCCe--eeeecCCchHHHHHHHHHHHHHHc----CCcEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 789997665433 3455 999999999999999999854432 2467788888888889999999887653
No 71
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=96.51 E-value=0.00051 Score=79.31 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=43.7
Q ss_pred HhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHH
Q psy11433 456 DAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELA 511 (941)
Q Consensus 456 ~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~ 511 (941)
..+.++++.||||+|||++++.|++..+...+ .++++.++|.....|+.+++.
T Consensus 17 ~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~---~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 17 RKKRLTIMDLHPGAGKTKRILPSIVREALLRR---LRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp STTCEEEECCCTTSSCCTTHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHTT
T ss_pred hcCCeEEEECCCCCCHhhHHHHHHHHHHHhcC---CcEEEECCCHHHHHHHHHHhc
Confidence 35566699999999999999999987665543 688999999998888888775
No 72
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=96.42 E-value=0.00067 Score=81.52 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHH
Q psy11433 438 EYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELA 511 (941)
Q Consensus 438 ~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~ 511 (941)
..|.|+|.. . ...+.+|+++++.||||+|||++++.|++..+...+ .+++++++|.....|+.++++
T Consensus 170 ~~~lpiq~~---~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~---~~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 170 RIGEPDYEV---D-EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRR---LRTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp CCCCCCCCC---C-GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHTT
T ss_pred ccCCCcccc---C-HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCC---CeEEEEcChHHHHHHHHHHhc
Confidence 456666644 1 667778999999999999999999999998776543 689999999998888888775
No 73
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=96.33 E-value=0.0092 Score=69.16 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 439 YIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
.+||.|.+....+......++.+|+-.|||+|||+..+..+........ ....+|+| + .+.+.|..+|+++.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~-~~~~LIv~-P-~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENE-LTPSLVIC-P-LSVLKNWEEELSKF 108 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC-CSSEEEEE-C-STTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCC-CCCEEEEc-c-HHHHHHHHHHHHHH
Confidence 4899999999888777778899999999999999998776655544332 22334444 4 34678888888875
No 74
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.33 E-value=0.0063 Score=63.51 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCC-CCceEEEeccccchhHHHHHHHH
Q psy11433 440 IYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPL-DVTKLLYCSRTVPEIEKVVEELA 511 (941)
Q Consensus 440 py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~-~~~ki~~ct~t~~q~~q~i~el~ 511 (941)
.++.|.+.+. ++..|+.+++.||||+|||..+..+++......+. ...++++...+.....|+.+.+.
T Consensus 62 ~~~~q~~~i~----~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~ 130 (235)
T 3llm_A 62 VKKFESEILE----AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVA 130 (235)
T ss_dssp GGGGHHHHHH----HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHH
T ss_pred hHHHHHHHHH----HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHH
Confidence 5677865554 55678999999999999999988888876554331 23467766677666666655443
No 75
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=96.31 E-value=0.007 Score=74.30 Aligned_cols=69 Identities=16% Similarity=0.083 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHHHHHH
Q psy11433 439 YIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYY 517 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~~~~~ 517 (941)
.|||+|..-.-.+ -.|+ |.||+||+|||+++..|++..+... ..+.+.|.|.-...|..+++.++..++
T Consensus 111 rP~~VQ~~~ip~L----l~G~--Iaem~TGeGKTLa~~LP~~l~aL~g----~~v~VvTpTreLA~Qdae~m~~l~~~l 179 (922)
T 1nkt_A 111 RPFDVQVMGAAAL----HLGN--VAEMKTGEGKTLTCVLPAYLNALAG----NGVHIVTVNDYLAKRDSEWMGRVHRFL 179 (922)
T ss_dssp CCCHHHHHHHHHH----HTTE--EEECCTTSCHHHHTHHHHHHHHTTT----SCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhH----hcCC--EEEecCCCccHHHHHHHHHHHHHhC----CCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 3889997666543 3444 9999999999999999997544332 357788888888889999998887653
No 76
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=96.11 E-value=0.0036 Score=71.77 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=42.2
Q ss_pred cCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHH
Q psy11433 458 KGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELA 511 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~ 511 (941)
|+++++.||||+|||++++.|++..+..++ .++++.++|.....|..+.++
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g---~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKR---LRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEECcHHHHHHHHHHHhC
Confidence 689999999999999999999995555443 588999999988888776664
No 77
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.61 E-value=0.017 Score=69.54 Aligned_cols=66 Identities=29% Similarity=0.408 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHH
Q psy11433 440 IYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512 (941)
Q Consensus 440 py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~ 512 (941)
.-+.|.+ +|..++..+...||.||+|||||-.+...+ .++...+ .+|++|+.|+.....+++.|..
T Consensus 190 LN~~Q~~---AV~~al~~~~~~lI~GPPGTGKT~ti~~~I-~~l~~~~---~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 190 LDTSQKE---AVLFALSQKELAIIHGPPGTGKTTTVVEII-LQAVKQG---LKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp CCHHHHH---HHHHHHHCSSEEEEECCTTSCHHHHHHHHH-HHHHHTT---CCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHH---HHHHHhcCCCceEEECCCCCCHHHHHHHHH-HHHHhCC---CeEEEEcCchHHHHHHHHHHHh
Confidence 4578865 455667777899999999999998755544 4444433 5899999999988877776643
No 78
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.51 E-value=0.028 Score=64.86 Aligned_cols=66 Identities=23% Similarity=0.299 Sum_probs=52.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcC-ceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchh
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKG-HCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEI 503 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~-~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~ 503 (941)
.||..+.+.|.+....+...+..+. ++++.||.|||||. ++...+.++...+. ..++.++.|....
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~-ll~~~~~~l~~~~~--~~il~~a~T~~Aa 87 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATT-LTKFIIEALISTGE--TGIILAAPTHAAK 87 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHH-HHHHHHHHHHHTTC--CCEEEEESSHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHH-HHHHHHHHHHhcCC--ceEEEecCcHHHH
Confidence 5677899999999999999988765 99999999999994 55667777766541 3678888876643
No 79
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=95.41 E-value=0.021 Score=70.12 Aligned_cols=68 Identities=13% Similarity=0.019 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHHHHH
Q psy11433 439 YIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY 516 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~~~~ 516 (941)
.|||+|..-+-. +-.|+ |.||+||+|||+++..|++..+... ..+.+.|.|.-...|..+.+..+...
T Consensus 79 ~Pt~VQ~~~ip~----LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G----~qv~VvTPTreLA~Qdae~m~~l~~~ 146 (997)
T 2ipc_A 79 RHFDVQLIGGAV----LHEGK--IAEMKTGEGKTLVATLAVALNALTG----KGVHVVTVNDYLARRDAEWMGPVYRG 146 (997)
T ss_dssp CCCHHHHHHHHH----HHTTS--EEECCSTHHHHHHHHHHHHHHHTTC----SCCEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHhhccc----ccCCc--eeeccCCCchHHHHHHHHHHHHHhC----CCEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 388999766643 34555 9999999999999999996433322 35777888888888999999888654
No 80
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=94.76 E-value=0.052 Score=68.56 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHH
Q psy11433 439 YIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~ 512 (941)
++||.|.+.+..+.. ..++.+|+..|||+|||+.++.++.......+ ..++++.+++ +.+.|-.+|+.+
T Consensus 153 ~LrpyQ~eav~~~l~--~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~--~~rvLIVvP~-sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGR--RHAPRVLLADEVGLGKTIEAGMILHQQLLSGA--AERVLIIVPE-TLQHQWLVEMLR 221 (968)
T ss_dssp CCCHHHHHHHHHHHH--SSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS--CCCEEEECCT-TTHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC--CCeEEEEeCH-HHHHHHHHHHHH
Confidence 599999987776554 23578999999999999999888877766543 2467888888 888898888865
No 81
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.062 Score=66.41 Aligned_cols=73 Identities=11% Similarity=0.099 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 439 YIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
++||.|.+.+..+......++.+|+-.|||+|||+..|+.+.............+|+|- .+.+.|-.+|+.+.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P--~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP--LSTMPAWLDTFEKW 308 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC--TTTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC--chHHHHHHHHHHHH
Confidence 58999999999999899999999999999999999988877655443332334556664 44567777887765
No 82
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=94.52 E-value=0.076 Score=63.96 Aligned_cols=75 Identities=19% Similarity=0.312 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHHHH-----HhcCceeeeCCCCCchhHHHHHHHHHHHhcCCC---CCceEEEeccccchhHHHHHHH
Q psy11433 439 YIYPEQYAYMVELKKAL-----DAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPL---DVTKLLYCSRTVPEIEKVVEEL 510 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al-----~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~---~~~ki~~ct~t~~q~~q~i~el 510 (941)
.+||.|.+....+++++ ..+..+|+-.+||+|||+..|+.+...+...+. ...++++.+.+ +.+.|-.+|+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 48999999999999887 356789999999999999999988877765432 12234444443 5677778888
Q ss_pred HHHH
Q psy11433 511 ARLF 514 (941)
Q Consensus 511 ~~~~ 514 (941)
.+..
T Consensus 134 ~~~~ 137 (644)
T 1z3i_X 134 GKWL 137 (644)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 7753
No 83
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.77 E-value=0.1 Score=62.67 Aligned_cols=67 Identities=16% Similarity=0.281 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHH
Q psy11433 439 YIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~ 512 (941)
...+.|.+.+..+. .+...++.||+|||||..+...+....... ..+|++|+.|+....++.+.+..
T Consensus 180 ~ln~~Q~~av~~~l----~~~~~li~GppGTGKT~~~~~~i~~l~~~~---~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 180 DLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQG---NGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCHHHHHHHHHHH----TCSEEEEECCTTSCHHHHHHHHHHHHHTSS---SCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh----cCCCeEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEEEeCcHHHHHHHHHHHHh
Confidence 46789987776553 467999999999999987655443333322 36899999999887777666543
No 84
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=93.77 E-value=0.17 Score=61.27 Aligned_cols=68 Identities=15% Similarity=0.067 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHHHHHH
Q psy11433 440 IYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYY 517 (941)
Q Consensus 440 py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~~~~~ 517 (941)
||+.|+- ..+ +|-.|+ |.|+.||.||||++..|++..+... ..+.+.|.+.-...|-.+++.++.+.+
T Consensus 76 ~~dvQli--gg~--~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G----~~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 76 PFDVQVM--GGI--ALHEGK--VAEMKTGEGKTLAATMPIYLNALIG----KGVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp CCHHHHH--HHH--HHHTTC--EEECCTTSCHHHHTHHHHHHHHTTS----SCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHH--HHH--HHhCCC--hhhccCCCCccHHHHHHHHHHHhcC----CceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 6677743 333 333555 8999999999999999987555443 346667877777888888888887653
No 85
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=93.09 E-value=0.062 Score=65.08 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=37.7
Q ss_pred hcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 457 AKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
.|+++++.||||+|||. +++..+... .+.+|++.|.....|+.+.+...
T Consensus 154 ~rk~vlv~apTGSGKT~----~al~~l~~~----~~gl~l~PtR~LA~Qi~~~l~~~ 202 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTY----HAIQKYFSA----KSGVYCGPLKLLAHEIFEKSNAA 202 (677)
T ss_dssp CCEEEEEECCTTSSHHH----HHHHHHHHS----SSEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHH----HHHHHHHhc----CCeEEEeCHHHHHHHHHHHHHhc
Confidence 67899999999999998 444444433 23588999999999998887653
No 86
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=91.75 E-value=0.18 Score=62.00 Aligned_cols=66 Identities=17% Similarity=0.119 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCC-CCceEEEeccccchhHHHHHHH
Q psy11433 440 IYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPL-DVTKLLYCSRTVPEIEKVVEEL 510 (941)
Q Consensus 440 py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~-~~~ki~~ct~t~~q~~q~i~el 510 (941)
|.+.|. ..+..++..|+++++.||||+|||+ +.|.+........ ...++++...+.....|+.+.+
T Consensus 94 P~~~q~---~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l 160 (773)
T 2xau_A 94 PVHAQR---DEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRV 160 (773)
T ss_dssp GGGGGH---HHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHH
T ss_pred ChHHHH---HHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEecCchHHHHHHHHHHH
Confidence 445564 3455567788999999999999999 4554432221110 1245666667766666665544
No 87
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.70 E-value=0.22 Score=61.47 Aligned_cols=67 Identities=18% Similarity=0.348 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHH
Q psy11433 439 YIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~ 512 (941)
..-+.|.+.+..+. .+...++.||+|||||..+...+....... ..+|++|+.|+....++.+.+..
T Consensus 360 ~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~~i~~~i~~l~~~~---~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 360 QLNSSQSNAVSHVL----QRPLSLIQGPPGTGKTVTSATIVYHLSKIH---KDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCCHHHHHHHHHHT----TCSEEEEECSTTSSHHHHHHHHHHHHHHHH---CCCEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh----cCCCEEEECCCCCCHHHHHHHHHHHHHhCC---CCeEEEEcCcHHHHHHHHHHHHh
Confidence 46789987776543 467899999999999986554443333322 25899999999887777766654
No 88
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=91.67 E-value=0.091 Score=63.29 Aligned_cols=55 Identities=18% Similarity=0.182 Sum_probs=43.1
Q ss_pred HHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 452 KKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 452 ~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
..++.+++.+++.||||+|||.+++.+++. . ..++++.+.|.....|+.+.+.+.
T Consensus 226 ~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~----~---g~~vLVl~PTReLA~Qia~~l~~~ 280 (666)
T 3o8b_A 226 PAVPQSFQVAHLHAPTGSGKSTKVPAAYAA----Q---GYKVLVLNPSVAATLGFGAYMSKA 280 (666)
T ss_dssp CCCCSSCEEEEEECCTTSCTTTHHHHHHHH----T---TCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCeEEEEeCCchhHHHHHHHHHHH----C---CCeEEEEcchHHHHHHHHHHHHHH
Confidence 344557889999999999999999988765 1 257999999988888887765543
No 89
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.23 E-value=0.31 Score=60.17 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHH
Q psy11433 439 YIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELA 511 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~ 511 (941)
...+.|.+.+..+. .+...++.||+|||||..+... +.++... ...+|++|+.|.....++.+.+.
T Consensus 356 ~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~ti~~~-i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 356 DLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSATI-VYHLARQ--GNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp CCCHHHHHHHHHHH----TSSEEEEECCTTSCHHHHHHHH-HHHHHTT--CSSCEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhc----cCCeEEEEcCCCCCHHHHHHHH-HHHHHHc--CCCcEEEEcCcHHHHHHHHHHHH
Confidence 45789977766543 4678999999999999865544 4444332 13689999999887766665554
No 90
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.05 E-value=0.34 Score=57.89 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHHHHhcCceeeeCCCCCchh--HHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHHH
Q psy11433 441 YPEQYAYMVELKKALDAKGHCLLEMPSGTGKT--TSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLF 514 (941)
Q Consensus 441 y~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKT--ls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~~ 514 (941)
.+.|.+.+..+ ..++.+++.||+||||| ++.+.+.+.-+.. ....+++.|+.|.....++.+.+....
T Consensus 151 ~~~Q~~Ai~~~----l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~--~~~~~vll~APTg~AA~~L~e~~~~~~ 220 (608)
T 1w36_D 151 INWQKVAAAVA----LTRRISVISGGPGTGKTTTVAKLLAALIQMAD--GERCRIRLAAPTGKAAARLTESLGKAL 220 (608)
T ss_dssp CCHHHHHHHHH----HTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS--SCCCCEEEEBSSHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHH----hcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh--cCCCeEEEEeCChhHHHHHHHHHHHHH
Confidence 46787766544 36899999999999999 6666666553311 123688999999888777776665543
No 91
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=90.00 E-value=0.41 Score=57.11 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 440 IYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 440 py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
..+.|.+.+. ..++++++.||.|||||..++.-+...+...+....+|+++|.|......+.+.+...
T Consensus 10 Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 10 LNDKQREAVA------APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp CCHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 5678876664 2368999999999999987776655555443334468999999888766666655544
No 92
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.42 E-value=0.32 Score=46.44 Aligned_cols=29 Identities=24% Similarity=0.278 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCceeeeCCCCCchhHHH
Q psy11433 447 YMVELKKALDAKGHCLLEMPSGTGKTTSL 475 (941)
Q Consensus 447 ~M~~v~~al~~~~~~iiEaPTGTGKTls~ 475 (941)
+.+.+..+...+.++++.+|+|||||...
T Consensus 13 ~~~~~~~~a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 13 YRRRLQQLSETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp HHHHHHHHTTCCSCEEEESSTTSSHHHHH
T ss_pred HHHHHHHHhCCCCCEEEECCCCCCHHHHH
Confidence 33344444457789999999999999643
No 93
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.23 E-value=0.28 Score=46.84 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCceeeeCCCCCchhH
Q psy11433 447 YMVELKKALDAKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 447 ~M~~v~~al~~~~~~iiEaPTGTGKTl 473 (941)
+.+.+..+...+.++++.+|+|||||.
T Consensus 16 l~~~~~~~~~~~~~vll~G~~GtGKt~ 42 (143)
T 3co5_A 16 MNREVEAAAKRTSPVFLTGEAGSPFET 42 (143)
T ss_dssp HHHHHHHHHTCSSCEEEEEETTCCHHH
T ss_pred HHHHHHHHhCCCCcEEEECCCCccHHH
Confidence 333344445567899999999999996
No 94
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=88.04 E-value=0.41 Score=52.50 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHHHhcC--c-eeeeCCCCCchhHHHHHHH
Q psy11433 440 IYPEQYAYMVELKKALDAKG--H-CLLEMPSGTGKTTSLLSLI 479 (941)
Q Consensus 440 py~~Q~~~M~~v~~al~~~~--~-~iiEaPTGTGKTls~L~~a 479 (941)
+||.|.+.+..+..++.+|+ | .+|.||.|||||......+
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la 45 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHH
Confidence 57899999999999999875 3 8999999999997666544
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=87.97 E-value=0.75 Score=54.55 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHH
Q psy11433 440 IYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKV 506 (941)
Q Consensus 440 py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~ 506 (941)
..+.|.+.+..+. .++++++.+|.|||||..+ ...+..+...+ .+++.|+.|......+
T Consensus 190 L~~~Q~~Av~~~~----~~~~~~I~G~pGTGKTt~i-~~l~~~l~~~g---~~Vl~~ApT~~Aa~~L 248 (574)
T 3e1s_A 190 LSEEQASVLDQLA----GHRLVVLTGGPGTGKSTTT-KAVADLAESLG---LEVGLCAPTGKAARRL 248 (574)
T ss_dssp CCHHHHHHHHHHT----TCSEEEEECCTTSCHHHHH-HHHHHHHHHTT---CCEEEEESSHHHHHHH
T ss_pred CCHHHHHHHHHHH----hCCEEEEEcCCCCCHHHHH-HHHHHHHHhcC---CeEEEecCcHHHHHHh
Confidence 5688977665543 5789999999999999654 33444444433 6788898887665433
No 96
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=87.42 E-value=0.28 Score=53.40 Aligned_cols=33 Identities=33% Similarity=0.303 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhcCceeeeCCCCCchhHHH
Q psy11433 443 EQYAYMVELKKALDAKGHCLLEMPSGTGKTTSL 475 (941)
Q Consensus 443 ~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~ 475 (941)
+|.+.+..+..++..++++++.+|+|||||...
T Consensus 31 g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 31 GQKYMINRLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp SCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 577888899999999999999999999999644
No 97
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=87.02 E-value=0.3 Score=56.92 Aligned_cols=32 Identities=19% Similarity=0.046 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhcCceeeeCCCCCchhHH
Q psy11433 443 EQYAYMVELKKALDAKGHCLLEMPSGTGKTTS 474 (941)
Q Consensus 443 ~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls 474 (941)
+|.+.++.+..++..++++++.+|+|||||..
T Consensus 26 Gq~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 26 ERSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp SCHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 57788899999999999999999999999973
No 98
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.45 E-value=0.72 Score=46.12 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhc------CceeeeCCCCCchhHHH
Q psy11433 442 PEQYAYMVELKKALDAK------GHCLLEMPSGTGKTTSL 475 (941)
Q Consensus 442 ~~Q~~~M~~v~~al~~~------~~~iiEaPTGTGKTls~ 475 (941)
+.|.+.+..+.+.+... .++++-+|+|||||...
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 32 DGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp HHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 46777788888888765 78999999999999743
No 99
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=86.28 E-value=1.2 Score=53.76 Aligned_cols=70 Identities=20% Similarity=0.139 Sum_probs=56.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcC-ceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHH
Q psy11433 436 PYEYIYPEQYAYMVELKKALDAKG-HCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513 (941)
Q Consensus 436 Py~~py~~Q~~~M~~v~~al~~~~-~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~ 513 (941)
|| .|++.|-+.+..+.+.+..|. +.++-+.||+|||+.+...+ .-. + ..+++.+++..+..|+.+|++.+
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~-~~~--~----~~~lvv~~~~~~A~ql~~el~~~ 76 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVI-EAL--G----RPALVLAPNKILAAQLAAEFREL 76 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHH--T----CCEEEEESSHHHHHHHHHHHHHH
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHH-HHh--C----CCEEEEecCHHHHHHHHHHHHHH
Confidence 56 599999999999999998874 57788999999998664332 211 1 24788899999999999999987
No 100
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=84.52 E-value=0.25 Score=49.59 Aligned_cols=44 Identities=16% Similarity=0.304 Sum_probs=25.1
Q ss_pred HHhhcCcEEEEccccccChhhhhHh----hhhcCCCcEEEEecCcccc
Q psy11433 77 QAIIHAKIVVYSYHYLLDPKIANVV----SKELARSSVVVFDEAHNID 120 (941)
Q Consensus 77 ~~~~~AdIVv~~y~yLl~~~~r~~~----~~~l~~~~ivI~DEAHNL~ 120 (941)
.....++|+|+++..|......... ...+..-.+|||||||++.
T Consensus 128 ~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~ 175 (216)
T 3b6e_A 128 EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTN 175 (216)
T ss_dssp HHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC----
T ss_pred hhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhc
Confidence 3345789999999988654322110 0223345799999999994
No 101
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=83.89 E-value=1.3 Score=53.44 Aligned_cols=66 Identities=18% Similarity=0.257 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHH
Q psy11433 440 IYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELA 511 (941)
Q Consensus 440 py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~ 511 (941)
..|.|.+.+.. .++++++.|+.|||||-.+..-+...+...+.+..+|++.|-|......+-+.+.
T Consensus 3 L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~ 68 (673)
T 1uaa_A 3 LNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVG 68 (673)
T ss_dssp CCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHH
Confidence 45788666643 3689999999999999988776666555433344678888888765544444333
No 102
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=83.43 E-value=0.26 Score=50.73 Aligned_cols=51 Identities=24% Similarity=0.156 Sum_probs=33.0
Q ss_pred CHHHHHHHHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 70 CPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 70 CPY~~aR~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
.++...+..+..++|||+++..|++...+. ....+.+-.+|||||||.+.+
T Consensus 135 ~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~~~~ 185 (236)
T 2pl3_A 135 KDLKHEAERINNINILVCTPGRLLQHMDET-VSFHATDLQMLVLDEADRILD 185 (236)
T ss_dssp --CHHHHHHHTTCSEEEECHHHHHHHHHHC-SSCCCTTCCEEEETTHHHHHH
T ss_pred CCHHHHHHhCCCCCEEEECHHHHHHHHHhc-CCcccccccEEEEeChHHHhc
Confidence 344455566678999999999886532221 112233457999999999854
No 103
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=82.89 E-value=0.79 Score=44.37 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhc--CceeeeCCCCCchhHHHH
Q psy11433 444 QYAYMVELKKALDAK--GHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 444 Q~~~M~~v~~al~~~--~~~iiEaPTGTGKTls~L 476 (941)
+.+.+..+.+.+..+ .++++.+|+|||||...-
T Consensus 27 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 27 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred chHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 445566777777644 789999999999997543
No 104
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=82.79 E-value=0.77 Score=50.74 Aligned_cols=33 Identities=33% Similarity=0.264 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHH-----------------hcCceeeeCCCCCchhHHH
Q psy11433 443 EQYAYMVELKKALD-----------------AKGHCLLEMPSGTGKTTSL 475 (941)
Q Consensus 443 ~Q~~~M~~v~~al~-----------------~~~~~iiEaPTGTGKTls~ 475 (941)
+|.+.++.+..++. .+.+++|.+|||||||...
T Consensus 19 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 19 GQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHH
Confidence 46677777877773 4578999999999999843
No 105
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=82.59 E-value=0.82 Score=48.97 Aligned_cols=36 Identities=36% Similarity=0.475 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhcC--ceeeeCCCCCchhHHHHHH
Q psy11433 443 EQYAYMVELKKALDAKG--HCLLEMPSGTGKTTSLLSL 478 (941)
Q Consensus 443 ~Q~~~M~~v~~al~~~~--~~iiEaPTGTGKTls~L~~ 478 (941)
+|.+.+..+...+..|+ +++|.||+|||||...-..
T Consensus 29 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l 66 (327)
T 1iqp_A 29 GQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALAL 66 (327)
T ss_dssp SCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHH
Confidence 46777888888888775 8999999999999765443
No 106
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=82.35 E-value=0.88 Score=48.37 Aligned_cols=34 Identities=26% Similarity=0.204 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHh----------------cCceeeeCCCCCchhHHHH
Q psy11433 443 EQYAYMVELKKALDA----------------KGHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 443 ~Q~~~M~~v~~al~~----------------~~~~iiEaPTGTGKTls~L 476 (941)
+|.+.+..+..++.. +.+++|.+|+|||||...-
T Consensus 19 G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 19 GQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHH
Confidence 355566666666654 5789999999999996543
No 107
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=82.12 E-value=0.41 Score=47.90 Aligned_cols=45 Identities=27% Similarity=0.213 Sum_probs=30.6
Q ss_pred HHHHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 75 ARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 75 aR~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
.+.....++|+|+++..+++...+. ...+.+-.+|||||||++.+
T Consensus 114 ~~~~~~~~~i~v~T~~~l~~~~~~~--~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 114 KEALLRGADAVVATPGRALDYLRQG--VLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp HHHHHHCCSEEEECHHHHHHHHHHT--SSCCTTCSEEEEESHHHHHH
T ss_pred HHHhhCCCCEEEECHHHHHHHHHcC--CcchhhceEEEEEChhHhhc
Confidence 3444567899999998876543222 22344568999999998844
No 108
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=81.91 E-value=0.73 Score=49.28 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhc-----------CceeeeCCCCCchhHHHHHH
Q psy11433 443 EQYAYMVELKKALDAK-----------GHCLLEMPSGTGKTTSLLSL 478 (941)
Q Consensus 443 ~Q~~~M~~v~~al~~~-----------~~~iiEaPTGTGKTls~L~~ 478 (941)
+|...+..+..++..+ .+++|.+|+|||||...-+.
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~l 67 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTL 67 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHH
Confidence 5677778888888764 47999999999999755433
No 109
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=81.89 E-value=1 Score=44.72 Aligned_cols=32 Identities=38% Similarity=0.491 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhc--CceeeeCCCCCchhHHH
Q psy11433 444 QYAYMVELKKALDAK--GHCLLEMPSGTGKTTSL 475 (941)
Q Consensus 444 Q~~~M~~v~~al~~~--~~~iiEaPTGTGKTls~ 475 (941)
+.+.+..+.+.+..+ .++++.+|+|||||...
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHH
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 455677788888766 46999999999999744
No 110
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=81.83 E-value=0.97 Score=45.38 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhcC---ceeeeCCCCCchhHHH
Q psy11433 444 QYAYMVELKKALDAKG---HCLLEMPSGTGKTTSL 475 (941)
Q Consensus 444 Q~~~M~~v~~al~~~~---~~iiEaPTGTGKTls~ 475 (941)
+.+.++.+...+..++ .+++.+|+|||||..+
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 4556777888888776 6899999999999643
No 111
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=81.44 E-value=0.86 Score=49.94 Aligned_cols=39 Identities=8% Similarity=0.117 Sum_probs=26.7
Q ss_pred CHHHHHH-HHHHHHHHHh--cCceeeeCCCCCchhHHHHHHH
Q psy11433 441 YPEQYAY-MVELKKALDA--KGHCLLEMPSGTGKTTSLLSLI 479 (941)
Q Consensus 441 y~~Q~~~-M~~v~~al~~--~~~~iiEaPTGTGKTls~L~~a 479 (941)
|+.|.+- ...+..++.. +.++++-+|+|||||...-..+
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~ 66 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVM 66 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 3445443 4467777764 4689999999999998654443
No 112
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=81.26 E-value=0.35 Score=49.18 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=29.0
Q ss_pred HHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 77 QAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 77 ~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
..+..++|+|+++..|++...+. ...+.+-.+|||||||++.+
T Consensus 127 ~~~~~~~iiv~Tp~~l~~~~~~~--~~~~~~~~~iViDEah~~~~ 169 (224)
T 1qde_A 127 EGLRDAQIVVGTPGRVFDNIQRR--RFRTDKIKMFILDEADEMLS 169 (224)
T ss_dssp --CTTCSEEEECHHHHHHHHHTT--SSCCTTCCEEEEETHHHHHH
T ss_pred hcCCCCCEEEECHHHHHHHHHhC--CcchhhCcEEEEcChhHHhh
Confidence 34456899999998887543222 22234568999999999854
No 113
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=81.14 E-value=1 Score=47.27 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCceeeeCCCCCchhHH
Q psy11433 447 YMVELKKALDAKGHCLLEMPSGTGKTTS 474 (941)
Q Consensus 447 ~M~~v~~al~~~~~~iiEaPTGTGKTls 474 (941)
+.+.+..+...+.+++|.+|||||||..
T Consensus 18 ~~~~~~~~~~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 18 VLEQVSHLAPLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp HHHHHHHHTTSCSCEEEECCTTSCHHHH
T ss_pred HHHHHHHHhCCCCCEEEECCCCCcHHHH
Confidence 3444444455678999999999999963
No 114
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=81.08 E-value=0.84 Score=44.16 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHh--cCceeeeCCCCCchhHHHHH
Q psy11433 444 QYAYMVELKKALDA--KGHCLLEMPSGTGKTTSLLS 477 (941)
Q Consensus 444 Q~~~M~~v~~al~~--~~~~iiEaPTGTGKTls~L~ 477 (941)
+.+.+..+.+.+.. +.++++.+|+|||||...-.
T Consensus 27 ~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~ 62 (187)
T 2p65_A 27 RDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEG 62 (187)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHH
Confidence 44556667777764 57899999999999975443
No 115
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=80.72 E-value=2.1 Score=41.92 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHHH-----hcCceeeeCCCCCchhHHH
Q psy11433 441 YPEQYAYMVELKKALD-----AKGHCLLEMPSGTGKTTSL 475 (941)
Q Consensus 441 y~~Q~~~M~~v~~al~-----~~~~~iiEaPTGTGKTls~ 475 (941)
.+.|.+....+.+.++ .|..+++-+|+|||||.-+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 4678888887777664 5789999999999999643
No 116
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=80.67 E-value=0.57 Score=52.54 Aligned_cols=42 Identities=31% Similarity=0.417 Sum_probs=29.9
Q ss_pred HHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCcccc
Q psy11433 77 QAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120 (941)
Q Consensus 77 ~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~ 120 (941)
.....++|+|++|..|........+ .+.+-.+|||||||++.
T Consensus 97 ~~~~~~~ivv~T~~~l~~~~~~~~~--~~~~~~~vIiDEaH~~~ 138 (494)
T 1wp9_A 97 KAWARAKVIVATPQTIENDLLAGRI--SLEDVSLIVFDEAHRAV 138 (494)
T ss_dssp HHHHHCSEEEECHHHHHHHHHTTSC--CTTSCSEEEEETGGGCS
T ss_pred hhccCCCEEEecHHHHHHHHhcCCc--chhhceEEEEECCcccC
Confidence 3345789999999988765433222 23356799999999995
No 117
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=79.80 E-value=2.7 Score=51.17 Aligned_cols=67 Identities=21% Similarity=0.207 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHH
Q psy11433 440 IYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512 (941)
Q Consensus 440 py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~ 512 (941)
..|.|.+.... .++++++.|+.|||||-.+..-+...+...+.+..+|++.|-|.......-+.+..
T Consensus 12 Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 12 LNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp SCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 56889766542 36899999999999999877665555544443446788888887765444443433
No 118
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.77 E-value=0.56 Score=51.01 Aligned_cols=36 Identities=42% Similarity=0.560 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhc--CceeeeCCCCCchhHHHHHH
Q psy11433 443 EQYAYMVELKKALDAK--GHCLLEMPSGTGKTTSLLSL 478 (941)
Q Consensus 443 ~Q~~~M~~v~~al~~~--~~~iiEaPTGTGKTls~L~~ 478 (941)
+|.+.++.+..++..+ .+++|.+|+|||||...-+.
T Consensus 41 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l 78 (353)
T 1sxj_D 41 AQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILAL 78 (353)
T ss_dssp SCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHH
Confidence 3555678888888887 78999999999999765443
No 119
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=79.64 E-value=4.3 Score=48.14 Aligned_cols=74 Identities=9% Similarity=0.105 Sum_probs=56.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHHH
Q psy11433 435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLF 514 (941)
Q Consensus 435 FPy~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~~ 514 (941)
.|++ ++|.|..++..+ ...+..+++.|-|.|||-.....++.++...+ ...++++.++..|...++++++.+.
T Consensus 160 ~~~~-l~p~Q~~i~~~l----~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~--~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 160 IKVQ-LRDYQRDMLKIM----SSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK--DKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp BBCC-CCHHHHHHHHHH----HHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS--SCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccCc-CCHHHHHHHHhh----ccccEEEEEEcCccChHHHHHHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHHHHHHH
Confidence 3453 789999998877 24578999999999999876655554444432 3578888899999999998888775
Q ss_pred H
Q psy11433 515 D 515 (941)
Q Consensus 515 ~ 515 (941)
+
T Consensus 233 ~ 233 (592)
T 3cpe_A 233 E 233 (592)
T ss_dssp T
T ss_pred H
Confidence 4
No 120
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.40 E-value=1.3 Score=48.47 Aligned_cols=37 Identities=30% Similarity=0.444 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhcCc--eeeeCCCCCchhHHHHHHH
Q psy11433 443 EQYAYMVELKKALDAKGH--CLLEMPSGTGKTTSLLSLI 479 (941)
Q Consensus 443 ~Q~~~M~~v~~al~~~~~--~iiEaPTGTGKTls~L~~a 479 (941)
+|...+..+...+..|+. .+|-+|+|||||....+.+
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la 67 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALA 67 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHH
Confidence 467788889999998865 9999999999997665543
No 121
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=79.03 E-value=3.9 Score=44.23 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHh-----cCceeeeCCCCCchhHHHHHHH
Q psy11433 443 EQYAYMVELKKALDA-----KGHCLLEMPSGTGKTTSLLSLI 479 (941)
Q Consensus 443 ~Q~~~M~~v~~al~~-----~~~~iiEaPTGTGKTls~L~~a 479 (941)
.+.+....+.+.++. +.+++|-+|||||||.-.-+.+
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia 173 (308)
T 2qgz_A 132 SRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMA 173 (308)
T ss_dssp HHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHH
Confidence 455566666666765 6899999999999997544433
No 122
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=78.95 E-value=5.2 Score=44.91 Aligned_cols=74 Identities=9% Similarity=0.099 Sum_probs=55.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHHHHH
Q psy11433 436 PYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFD 515 (941)
Q Consensus 436 Py~~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~~~~ 515 (941)
|+. ++|.|..+|..+. ..+.++++.|-+.|||-.....++.++...+ ...++++.++..|...++++++.+.+
T Consensus 161 p~~-L~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~--g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 161 KVQ-LRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK--DKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp ECC-CCHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHSSS--SCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHhCC--CCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 443 7899999988763 3467999999999999876655554444432 35788888999998888888888765
Q ss_pred H
Q psy11433 516 Y 516 (941)
Q Consensus 516 ~ 516 (941)
.
T Consensus 234 ~ 234 (385)
T 2o0j_A 234 L 234 (385)
T ss_dssp H
T ss_pred h
Confidence 3
No 123
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=78.93 E-value=0.46 Score=47.55 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=28.7
Q ss_pred HhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 78 AIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 78 ~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
....++|+|+++..|.+...+. ...+..-.+|||||||++.+
T Consensus 119 ~~~~~~i~v~T~~~l~~~~~~~--~~~~~~~~~lViDEah~~~~ 160 (206)
T 1vec_A 119 LDDTVHVVIATPGRILDLIKKG--VAKVDHVQMIVLDEADKLLS 160 (206)
T ss_dssp TTSCCSEEEECHHHHHHHHHTT--CSCCTTCCEEEEETHHHHTS
T ss_pred cCCCCCEEEeCHHHHHHHHHcC--CcCcccCCEEEEEChHHhHh
Confidence 3456899999998876533222 12234568999999999854
No 124
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=78.73 E-value=1.3 Score=48.19 Aligned_cols=35 Identities=31% Similarity=0.298 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhc-------CceeeeCCCCCchhHHHHH
Q psy11433 443 EQYAYMVELKKALDAK-------GHCLLEMPSGTGKTTSLLS 477 (941)
Q Consensus 443 ~Q~~~M~~v~~al~~~-------~~~iiEaPTGTGKTls~L~ 477 (941)
+|.+.|..+...+... .+++|.+|+|||||...-.
T Consensus 33 G~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 33 GQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp SCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHH
Confidence 3555666666666642 5899999999999975433
No 125
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=78.50 E-value=0.59 Score=48.65 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=30.8
Q ss_pred HHHHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 75 ARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 75 aR~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
.+.....+||||+++..|++...+. ...+..-.+|||||||.+.+
T Consensus 144 ~~~~~~~~~Ivv~Tp~~l~~~l~~~--~~~~~~~~~lViDEah~~~~ 188 (253)
T 1wrb_A 144 IREVQMGCHLLVATPGRLVDFIEKN--KISLEFCKYIVLDEADRMLD 188 (253)
T ss_dssp HHHHSSCCSEEEECHHHHHHHHHTT--SBCCTTCCEEEEETHHHHHH
T ss_pred HHHhCCCCCEEEECHHHHHHHHHcC--CCChhhCCEEEEeCHHHHHh
Confidence 3444567899999999887543222 22344557999999999844
No 126
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=78.29 E-value=0.54 Score=48.01 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=29.9
Q ss_pred HHHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 76 RQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 76 R~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
+.....+||+|++...|++-.... ...+.+-.+|||||||.+.+
T Consensus 138 ~~~~~~~~iiv~Tp~~l~~~~~~~--~~~~~~~~~lViDEah~~~~ 181 (228)
T 3iuy_A 138 EDISKGVDIIIATPGRLNDLQMNN--SVNLRSITYLVIDEADKMLD 181 (228)
T ss_dssp HHHHSCCSEEEECHHHHHHHHHTT--CCCCTTCCEEEECCHHHHHH
T ss_pred HHhcCCCCEEEECHHHHHHHHHcC--CcCcccceEEEEECHHHHhc
Confidence 334456899999998876633222 22344568999999998754
No 127
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=77.92 E-value=3.7 Score=49.39 Aligned_cols=72 Identities=21% Similarity=0.226 Sum_probs=56.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcC-ceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHHHHHHHHH
Q psy11433 434 FFPYEYIYPEQYAYMVELKKALDAKG-HCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512 (941)
Q Consensus 434 ~FPy~~py~~Q~~~M~~v~~al~~~~-~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q~i~el~~ 512 (941)
.=||+ |+..|.+.+..+.+.+..|. +..+-+.||+|||+..-..+ . +.+ ..+++-+++..+..|+.+|++.
T Consensus 8 ~~~~~-p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~-~--~~~----~~~lvv~~~~~~A~~l~~el~~ 79 (661)
T 2d7d_A 8 VSKYQ-PQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLI-K--EVN----KPTLVIAHNKTLAGQLYSEFKE 79 (661)
T ss_dssp CCSCC-CCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-H--HHC----CCEEEECSSHHHHHHHHHHHHH
T ss_pred ecCCC-CCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHH-H--HhC----CCEEEEECCHHHHHHHHHHHHH
Confidence 34665 99999999999999999875 57788999999998553322 1 112 2478888999999999999998
Q ss_pred H
Q psy11433 513 L 513 (941)
Q Consensus 513 ~ 513 (941)
+
T Consensus 80 ~ 80 (661)
T 2d7d_A 80 F 80 (661)
T ss_dssp H
T ss_pred H
Confidence 7
No 128
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=77.68 E-value=0.38 Score=49.83 Aligned_cols=42 Identities=19% Similarity=0.134 Sum_probs=28.2
Q ss_pred hcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 80 IHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 80 ~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
..+||||++...|++...+......+.+-.+|||||||.+.+
T Consensus 148 ~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~ 189 (245)
T 3dkp_A 148 KKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFE 189 (245)
T ss_dssp CCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHH
T ss_pred CCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcc
Confidence 357999999887765332221123344567999999999854
No 129
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=76.82 E-value=0.66 Score=48.50 Aligned_cols=46 Identities=22% Similarity=0.169 Sum_probs=31.0
Q ss_pred HHHHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 75 ARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 75 aR~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
.+.....++|+|+++..|++...+. -...+..-.+|||||||.+.+
T Consensus 155 ~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~l~~~~~lViDEah~l~~ 200 (249)
T 3ber_A 155 SLALAKKPHIIIATPGRLIDHLENT-KGFNLRALKYLVMDEADRILN 200 (249)
T ss_dssp HHHHHTCCSEEEECHHHHHHHHHHS-TTCCCTTCCEEEECSHHHHHH
T ss_pred HHHhcCCCCEEEECHHHHHHHHHcC-CCcCccccCEEEEcChhhhhc
Confidence 3444568899999999887643221 112344567999999998854
No 130
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=76.73 E-value=2.4 Score=46.46 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHHHhcC----ceeeeCCCCCchhHHHHH
Q psy11433 441 YPEQYAYMVELKKALDAKG----HCLLEMPSGTGKTTSLLS 477 (941)
Q Consensus 441 y~~Q~~~M~~v~~al~~~~----~~iiEaPTGTGKTls~L~ 477 (941)
.+.+.+.+..+.+.+..+. +++|.+|+|||||...-.
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHH
Confidence 4556666666777777653 699999999999985443
No 131
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=76.70 E-value=3 Score=44.44 Aligned_cols=20 Identities=40% Similarity=0.419 Sum_probs=16.2
Q ss_pred CceeeeCCCCCchhHHHHHH
Q psy11433 459 GHCLLEMPSGTGKTTSLLSL 478 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~L~~ 478 (941)
.+++|.+|+|||||...-..
T Consensus 68 ~~vll~G~~GtGKT~la~~l 87 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKM 87 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 47999999999999765433
No 132
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=76.50 E-value=0.87 Score=49.34 Aligned_cols=48 Identities=23% Similarity=0.238 Sum_probs=32.6
Q ss_pred HHHHHHHHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCcccc
Q psy11433 71 PYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120 (941)
Q Consensus 71 PY~~aR~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~ 120 (941)
........+..++|+|+++..|++..... ...+.+-.+|||||||.+.
T Consensus 113 ~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~iIiDEah~~~ 160 (367)
T 1hv8_A 113 AIYPQIKALKNANIVVGTPGRILDHINRG--TLNLKNVKYFILDEADEML 160 (367)
T ss_dssp CHHHHHHHHHTCSEEEECHHHHHHHHHTT--CSCTTSCCEEEEETHHHHH
T ss_pred chHHHHhhcCCCCEEEecHHHHHHHHHcC--CcccccCCEEEEeCchHhh
Confidence 33444455668999999999887643222 1223455799999999984
No 133
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=76.39 E-value=0.83 Score=48.93 Aligned_cols=49 Identities=31% Similarity=0.314 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 71 PYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 71 PY~~aR~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
++......+..++|+|+++..|.+...... ..+.+-.+|||||||.+.+
T Consensus 95 ~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~iViDEah~~~~ 143 (337)
T 2z0m_A 95 PYKAQINRVRNADIVVATPGRLLDLWSKGV--IDLSSFEIVIIDEADLMFE 143 (337)
T ss_dssp CHHHHHHHHTTCSEEEECHHHHHHHHHTTS--CCGGGCSEEEEESHHHHHH
T ss_pred chHHHHhhcCCCCEEEECHHHHHHHHHcCC--cchhhCcEEEEEChHHhhc
Confidence 334444556679999999998875432221 1233457999999998744
No 134
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=76.18 E-value=0.96 Score=46.76 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=32.2
Q ss_pred HHHHHHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 73 FLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 73 ~~aR~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
...+.....+||+|++...|++...+. ...+.+-.+|||||||.+.+
T Consensus 144 ~~~~~~~~~~~I~v~Tp~~l~~~l~~~--~~~~~~~~~lViDEah~l~~ 190 (242)
T 3fe2_A 144 PQIRDLERGVEICIATPGRLIDFLECG--KTNLRRTTYLVLDEADRMLD 190 (242)
T ss_dssp HHHHHHHHCCSEEEECHHHHHHHHHHT--SCCCTTCCEEEETTHHHHHH
T ss_pred HHHHHhcCCCCEEEECHHHHHHHHHcC--CCCcccccEEEEeCHHHHhh
Confidence 334455567899999998886643222 22344567999999999854
No 135
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=75.87 E-value=1.5 Score=46.55 Aligned_cols=19 Identities=37% Similarity=0.296 Sum_probs=16.1
Q ss_pred cCceeeeCCCCCchhHHHH
Q psy11433 458 KGHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTls~L 476 (941)
+..++|.+|+|||||...-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5789999999999997543
No 136
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=75.78 E-value=1.6 Score=47.18 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCceeeeCCCCCchhHH
Q psy11433 448 MVELKKALDAKGHCLLEMPSGTGKTTS 474 (941)
Q Consensus 448 M~~v~~al~~~~~~iiEaPTGTGKTls 474 (941)
+..+..+...+.+++|.+|||||||+.
T Consensus 15 ~~~~~~~a~~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 15 LNEIAMVAPSDATVLIHGDSGTGKELV 41 (304)
T ss_dssp HHHHHHHCSTTSCEEEESCTTSCHHHH
T ss_pred HHHHHHHhCCCCcEEEECCCCchHHHH
Confidence 333444444678999999999999974
No 137
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=74.95 E-value=3.1 Score=41.93 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHh--cCceeeeCCCCCchhHHHHH
Q psy11433 444 QYAYMVELKKALDA--KGHCLLEMPSGTGKTTSLLS 477 (941)
Q Consensus 444 Q~~~M~~v~~al~~--~~~~iiEaPTGTGKTls~L~ 477 (941)
+.+....+...+.. +.++++.+|+|||||...-.
T Consensus 36 ~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~ 71 (242)
T 3bos_A 36 NDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHA 71 (242)
T ss_dssp CHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHH
Confidence 34566666666664 68999999999999975433
No 138
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=74.67 E-value=0.68 Score=47.51 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=31.8
Q ss_pred HHHHHHHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 72 YFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 72 Y~~aR~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
+......+..++|+|+++..|++...+. ...+.+-.+|||||||.+.+
T Consensus 133 ~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~--~~~~~~~~~lViDEah~~~~ 180 (230)
T 2oxc_A 133 LSQDKTRLKKCHIAVGSPGRIKQLIELD--YLNPGSIRLFILDEADKLLE 180 (230)
T ss_dssp HHHHHHHTTSCSEEEECHHHHHHHHHTT--SSCGGGCCEEEESSHHHHHS
T ss_pred HHHHHHhccCCCEEEECHHHHHHHHhcC--CcccccCCEEEeCCchHhhc
Confidence 3444555678999999998876532222 12233446999999999854
No 139
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=74.28 E-value=2.1 Score=46.78 Aligned_cols=36 Identities=25% Similarity=0.217 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhcCc---eeeeCCCCCchhHHHHHH
Q psy11433 443 EQYAYMVELKKALDAKGH---CLLEMPSGTGKTTSLLSL 478 (941)
Q Consensus 443 ~Q~~~M~~v~~al~~~~~---~iiEaPTGTGKTls~L~~ 478 (941)
+|.+.+..+..++..++. .+|.||+|||||...-..
T Consensus 20 g~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~l 58 (373)
T 1jr3_A 20 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 58 (373)
T ss_dssp SCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHH
Confidence 466778888888887753 799999999999765433
No 140
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=74.23 E-value=1.3 Score=47.12 Aligned_cols=36 Identities=36% Similarity=0.521 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhcC--ceeeeCCCCCchhHHHHHH
Q psy11433 443 EQYAYMVELKKALDAKG--HCLLEMPSGTGKTTSLLSL 478 (941)
Q Consensus 443 ~Q~~~M~~v~~al~~~~--~~iiEaPTGTGKTls~L~~ 478 (941)
+|.+.+..+.+.+..++ +++|.||+|||||...-..
T Consensus 21 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l 58 (319)
T 2chq_A 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIAL 58 (319)
T ss_dssp SCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHH
Confidence 46677788888887764 7999999999999754433
No 141
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=73.90 E-value=1.1 Score=49.22 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=33.1
Q ss_pred HHHHHHHHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 71 PYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 71 PY~~aR~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
.+......+..++|+|+++..|++...+.. ..+.+-.+|||||||.+.+
T Consensus 128 ~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~vIiDEah~~~~ 176 (394)
T 1fuu_A 128 SFVEDAEGLRDAQIVVGTPGRVFDNIQRRR--FRTDKIKMFILDEADEMLS 176 (394)
T ss_dssp CHHHHHHHHHHCSEEEECHHHHHHHHHTTS--SCCTTCCEEEEETHHHHHH
T ss_pred chHHHHhhcCCCCEEEECHHHHHHHHHhCC--cchhhCcEEEEEChHHhhC
Confidence 334444555689999999998876543322 2234568999999999743
No 142
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=72.88 E-value=1.7 Score=47.17 Aligned_cols=19 Identities=37% Similarity=0.473 Sum_probs=16.2
Q ss_pred hcCceeeeCCCCCchhHHH
Q psy11433 457 AKGHCLLEMPSGTGKTTSL 475 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~ 475 (941)
..++++|.+|+|||||...
T Consensus 44 ~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GGCCEEEECCGGGCTTHHH
T ss_pred CCceEEEECCCCccHHHHH
Confidence 4678999999999999743
No 143
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=72.47 E-value=2.9 Score=44.02 Aligned_cols=20 Identities=40% Similarity=0.345 Sum_probs=16.3
Q ss_pred hcCceeeeCCCCCchhHHHH
Q psy11433 457 AKGHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L 476 (941)
.+..++|.+|+|||||...-
T Consensus 50 ~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 35689999999999997543
No 144
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=72.06 E-value=2.2 Score=45.67 Aligned_cols=18 Identities=50% Similarity=0.504 Sum_probs=15.5
Q ss_pred CceeeeCCCCCchhHHHH
Q psy11433 459 GHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~L 476 (941)
.+++|.+|+|||||...-
T Consensus 39 ~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCEEECCTTCCCHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 689999999999997543
No 145
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=72.05 E-value=0.83 Score=46.25 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=26.7
Q ss_pred cCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCcccc
Q psy11433 81 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120 (941)
Q Consensus 81 ~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~ 120 (941)
.++|+|+++..|++...+. ...+..-.+|||||||++.
T Consensus 134 ~~~i~v~T~~~l~~~~~~~--~~~~~~~~~lViDEah~~~ 171 (220)
T 1t6n_A 134 CPHIVVGTPGRILALARNK--SLNLKHIKHFILDECDKML 171 (220)
T ss_dssp CCSEEEECHHHHHHHHHTT--SSCCTTCCEEEEESHHHHH
T ss_pred CCCEEEeCHHHHHHHHHhC--CCCcccCCEEEEcCHHHHh
Confidence 4599999998876533222 2234456899999999884
No 146
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=71.60 E-value=1.4 Score=46.75 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=26.3
Q ss_pred hcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCcccc
Q psy11433 80 IHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120 (941)
Q Consensus 80 ~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~ 120 (941)
..++|+|++|..+..... . .+.+-.+|||||||++.
T Consensus 203 ~~~~I~v~T~~~l~~~~~-~----~~~~~~~vIiDEaH~~~ 238 (282)
T 1rif_A 203 NDAPVVVGTWQTVVKQPK-E----WFSQFGMMMNDECHLAT 238 (282)
T ss_dssp TTCSEEEECHHHHTTSCG-G----GGGGEEEEEEETGGGCC
T ss_pred cCCcEEEEchHHHHhhHH-H----HHhhCCEEEEECCccCC
Confidence 578999999987765421 1 12234799999999995
No 147
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=71.56 E-value=3.7 Score=46.88 Aligned_cols=36 Identities=28% Similarity=0.340 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhc----CceeeeCCCCCchhHHHHHH
Q psy11433 443 EQYAYMVELKKALDAK----GHCLLEMPSGTGKTTSLLSL 478 (941)
Q Consensus 443 ~Q~~~M~~v~~al~~~----~~~iiEaPTGTGKTls~L~~ 478 (941)
..++.+..+.+.+..| ++++|.+|+|||||...-+.
T Consensus 44 ~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~al 83 (456)
T 2c9o_A 44 NAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAI 83 (456)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHH
Confidence 3444444555555544 57999999999999765443
No 148
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=70.97 E-value=0.79 Score=46.50 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=26.6
Q ss_pred cCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 81 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 81 ~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
.+||+|+++..|++...+. ...+..-.+|||||||.+.+
T Consensus 126 ~~~Iiv~Tp~~l~~~l~~~--~~~~~~~~~lViDEah~~~~ 164 (219)
T 1q0u_A 126 QPHIVIGTPGRINDFIREQ--ALDVHTAHILVVDEADLMLD 164 (219)
T ss_dssp CCSEEEECHHHHHHHHHTT--CCCGGGCCEEEECSHHHHHH
T ss_pred CCCEEEeCHHHHHHHHHcC--CCCcCcceEEEEcCchHHhh
Confidence 6799999998876532221 12233457999999998854
No 149
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=70.77 E-value=3.9 Score=42.17 Aligned_cols=18 Identities=39% Similarity=0.361 Sum_probs=15.0
Q ss_pred CceeeeCCCCCchhHHHH
Q psy11433 459 GHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~L 476 (941)
..++|.+|+|||||...-
T Consensus 40 ~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 568999999999997543
No 150
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=70.57 E-value=1.5 Score=46.04 Aligned_cols=48 Identities=25% Similarity=0.133 Sum_probs=31.5
Q ss_pred HHHHHHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 73 FLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 73 ~~aR~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
...+.....++|||++...|++.. +..-...+.+-.+|||||||.+.+
T Consensus 168 ~~~~~~~~~~~Iiv~Tp~~l~~~~-~~~~~~~~~~l~~lViDEah~l~~ 215 (262)
T 3ly5_A 168 AEAQKLGNGINIIVATPGRLLDHM-QNTPGFMYKNLQCLVIDEADRILD 215 (262)
T ss_dssp HHHHHHHHCCSEEEECHHHHHHHH-HHCTTCCCTTCCEEEECSHHHHHH
T ss_pred HHHHHhcCCCCEEEEcHHHHHHHH-HccCCcccccCCEEEEcChHHHhh
Confidence 334445567899999988776533 221122344567999999998755
No 151
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=70.29 E-value=1.7 Score=49.95 Aligned_cols=59 Identities=22% Similarity=0.308 Sum_probs=36.2
Q ss_pred HHHHHHhchhCCCCHHHHHH--HHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCcccc
Q psy11433 57 ITKLKEMGRELGLCPYFLAR--QAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120 (941)
Q Consensus 57 iEdL~~~g~~~~~CPY~~aR--~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~ 120 (941)
.+++.+++....++-|...+ ......||||++|..+..... +. ...-.+||+||||++-
T Consensus 102 ~~e~~~~~~~~~v~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~---l~--~~~~~~vIvDEaH~~k 162 (500)
T 1z63_A 102 EEELSKFAPHLRFAVFHEDRSKIKLEDYDIILTTYAVLLRDTR---LK--EVEWKYIVIDEAQNIK 162 (500)
T ss_dssp HHHHHHHCTTSCEEECSSSTTSCCGGGSSEEEEEHHHHTTCHH---HH--TCCEEEEEEETGGGGS
T ss_pred HHHHHHHCCCceEEEEecCchhccccCCcEEEeeHHHHhccch---hc--CCCcCEEEEeCccccC
Confidence 45566655443333332222 234577999999998876432 11 1245799999999994
No 152
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=70.18 E-value=2.4 Score=48.59 Aligned_cols=35 Identities=34% Similarity=0.350 Sum_probs=28.2
Q ss_pred HHHHHH---HHHHHHHHhcC--ceeeeCCCCCchhHHHHH
Q psy11433 443 EQYAYM---VELKKALDAKG--HCLLEMPSGTGKTTSLLS 477 (941)
Q Consensus 443 ~Q~~~M---~~v~~al~~~~--~~iiEaPTGTGKTls~L~ 477 (941)
+|...+ ..+...+..++ +++|.+|+|||||...-.
T Consensus 30 Gq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ 69 (447)
T 3pvs_A 30 GQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEV 69 (447)
T ss_dssp SCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHH
T ss_pred CcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHH
Confidence 577777 78888898886 499999999999975443
No 153
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=69.90 E-value=3 Score=44.76 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=15.9
Q ss_pred cCceeeeCCCCCchhHHHH
Q psy11433 458 KGHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTls~L 476 (941)
++.+++.+|+|||||+..-
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CSEEEEECSSSSSHHHHHH
T ss_pred CceEEEECCCCcCHHHHHH
Confidence 5679999999999997543
No 154
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=69.66 E-value=2.5 Score=51.60 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhcC-----------ceeeeCCCCCchhHHHHH
Q psy11433 443 EQYAYMVELKKALDAKG-----------HCLLEMPSGTGKTTSLLS 477 (941)
Q Consensus 443 ~Q~~~M~~v~~al~~~~-----------~~iiEaPTGTGKTls~L~ 477 (941)
+|.+.|..+.+++.... +++|.+|||||||...-.
T Consensus 495 Gq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~a 540 (758)
T 3pxi_A 495 GQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARA 540 (758)
T ss_dssp SCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHH
Confidence 47788888888888532 699999999999975443
No 155
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=68.85 E-value=1.2 Score=48.82 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=28.3
Q ss_pred hcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 80 IHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 80 ~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
..++|+|+++..|++...+. ...+.+-.+|||||||++.+
T Consensus 120 ~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~iIiDEah~~~~ 159 (395)
T 3pey_A 120 INAQVIVGTPGTVLDLMRRK--LMQLQKIKIFVLDEADNMLD 159 (395)
T ss_dssp BCCSEEEECHHHHHHHHHTT--CBCCTTCCEEEEETHHHHHH
T ss_pred CCCCEEEEcHHHHHHHHHcC--CcccccCCEEEEEChhhhcC
Confidence 36899999999887543222 12244568999999999854
No 156
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=68.60 E-value=3 Score=45.23 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhcC--ceeeeCCCCCchhHHHHHHH
Q psy11433 443 EQYAYMVELKKALDAKG--HCLLEMPSGTGKTTSLLSLI 479 (941)
Q Consensus 443 ~Q~~~M~~v~~al~~~~--~~iiEaPTGTGKTls~L~~a 479 (941)
+|.+.+..+...+++|+ +.+|.+|.|||||....+.+
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la 39 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELP 39 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 47778889999999876 79999999999987665544
No 157
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=68.40 E-value=2.8 Score=46.23 Aligned_cols=20 Identities=40% Similarity=0.273 Sum_probs=16.4
Q ss_pred cCceeeeCCCCCchhHHHHH
Q psy11433 458 KGHCLLEMPSGTGKTTSLLS 477 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTls~L~ 477 (941)
.+.++|.+|+|||||...-.
T Consensus 117 ~~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46899999999999975443
No 158
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=68.36 E-value=1.3 Score=45.77 Aligned_cols=38 Identities=21% Similarity=0.119 Sum_probs=26.4
Q ss_pred CcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 82 AKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 82 AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
++|+|+++..|++...+.. ..+..-.+|||||||.+.+
T Consensus 150 ~~Ilv~Tp~~l~~~l~~~~--~~~~~~~~lViDEah~~~~ 187 (237)
T 3bor_A 150 PHIVVGTPGRVFDMLNRRY--LSPKWIKMFVLDEADEMLS 187 (237)
T ss_dssp CSEEEECHHHHHHHHHTTS--SCSTTCCEEEEESHHHHHH
T ss_pred CCEEEECHHHHHHHHHhCC--cCcccCcEEEECCchHhhc
Confidence 7999999887765432221 2234467999999998844
No 159
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=67.98 E-value=2.1 Score=44.46 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=23.9
Q ss_pred cCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 81 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 81 ~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
.++|+|++|..+.... +.+. .+..+|||||||++.+
T Consensus 171 ~~~i~v~T~~~l~~~~--~~~~---~~~~llIiDEaH~l~~ 206 (237)
T 2fz4_A 171 LKPLTVSTYDSAYVNA--EKLG---NRFMLLIFDEVHHLPA 206 (237)
T ss_dssp CCSEEEEEHHHHHHTH--HHHT---TTCSEEEEECSSCCCT
T ss_pred cCCEEEEeHHHHHhhH--HHhc---ccCCEEEEECCccCCC
Confidence 4578888887665322 1111 2357999999999965
No 160
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=67.84 E-value=3.3 Score=45.41 Aligned_cols=20 Identities=35% Similarity=0.119 Sum_probs=16.2
Q ss_pred cCceeeeCCCCCchhHHHHH
Q psy11433 458 KGHCLLEMPSGTGKTTSLLS 477 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTls~L~ 477 (941)
..++++.+|+|||||...-.
T Consensus 45 ~~~vll~G~~G~GKT~la~~ 64 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKY 64 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 45799999999999975533
No 161
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=67.78 E-value=5.8 Score=42.69 Aligned_cols=33 Identities=27% Similarity=0.224 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhc----CceeeeCCCCCchhHHHH
Q psy11433 444 QYAYMVELKKALDAK----GHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 444 Q~~~M~~v~~al~~~----~~~iiEaPTGTGKTls~L 476 (941)
+......+...++.. .+++|-+|+|||||..+-
T Consensus 19 ~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 19 NRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp THHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHH
Confidence 333344555555543 589999999999996543
No 162
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=67.63 E-value=2.9 Score=48.07 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHH--hcCceeeeCCCCCchhHHHHHHH
Q psy11433 443 EQYAYMVELKKALD--AKGHCLLEMPSGTGKTTSLLSLI 479 (941)
Q Consensus 443 ~Q~~~M~~v~~al~--~~~~~iiEaPTGTGKTls~L~~a 479 (941)
+|.+-|+.+...+. .+.+++|.+|+|||||...-..+
T Consensus 184 Gr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la 222 (468)
T 3pxg_A 184 GRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLA 222 (468)
T ss_dssp CCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHH
T ss_pred CcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHH
Confidence 45666777888885 45799999999999998654433
No 163
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=67.50 E-value=3.5 Score=45.58 Aligned_cols=19 Identities=42% Similarity=0.518 Sum_probs=15.7
Q ss_pred cCceeeeCCCCCchhHHHH
Q psy11433 458 KGHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTls~L 476 (941)
..+++|.+|+|||||...-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4589999999999996443
No 164
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=66.94 E-value=5 Score=41.56 Aligned_cols=18 Identities=39% Similarity=0.429 Sum_probs=14.9
Q ss_pred cCceeeeCCCCCchhHHH
Q psy11433 458 KGHCLLEMPSGTGKTTSL 475 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTls~ 475 (941)
.+.+++.+|+|||||...
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 457899999999999643
No 165
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=66.91 E-value=3.5 Score=48.95 Aligned_cols=36 Identities=31% Similarity=0.268 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHH
Q psy11433 443 EQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSL 478 (941)
Q Consensus 443 ~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~ 478 (941)
+|...++.+..++..|.+++|.+|+|||||...-+.
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~i 80 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAM 80 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHH
Confidence 577888999999999999999999999999754443
No 166
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=66.48 E-value=1.4 Score=48.60 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=28.8
Q ss_pred HHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCcccc
Q psy11433 77 QAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120 (941)
Q Consensus 77 ~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~ 120 (941)
.....++|+|+++..|++...+. ...+.+-.+|||||||.+.
T Consensus 135 ~~~~~~~Ivv~T~~~l~~~~~~~--~~~~~~~~~vIiDEaH~~~ 176 (400)
T 1s2m_A 135 RLNETVHILVGTPGRVLDLASRK--VADLSDCSLFIMDEADKML 176 (400)
T ss_dssp HTTSCCSEEEECHHHHHHHHHTT--CSCCTTCCEEEEESHHHHS
T ss_pred HhcCCCCEEEEchHHHHHHHHhC--CcccccCCEEEEeCchHhh
Confidence 33467899999998886543222 1223456899999999874
No 167
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=66.31 E-value=2.8 Score=46.71 Aligned_cols=20 Identities=35% Similarity=0.315 Sum_probs=16.5
Q ss_pred cCceeeeCCCCCchhHHHHH
Q psy11433 458 KGHCLLEMPSGTGKTTSLLS 477 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTls~L~ 477 (941)
..+++|.+|+|||||...-.
T Consensus 148 ~~~vLL~GppGtGKT~la~a 167 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKA 167 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 47899999999999975443
No 168
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=65.83 E-value=3 Score=45.14 Aligned_cols=19 Identities=37% Similarity=0.385 Sum_probs=15.6
Q ss_pred CceeeeCCCCCchhHHHHH
Q psy11433 459 GHCLLEMPSGTGKTTSLLS 477 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~L~ 477 (941)
+.++|.+|+|||||+..-.
T Consensus 52 ~~vLl~GppGtGKT~la~a 70 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKA 70 (322)
T ss_dssp CEEEEECSSSSCHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 5699999999999975443
No 169
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=65.50 E-value=3.7 Score=42.76 Aligned_cols=19 Identities=42% Similarity=0.391 Sum_probs=15.4
Q ss_pred cCceeeeCCCCCchhHHHH
Q psy11433 458 KGHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTls~L 476 (941)
.+.++|.+|+|||||...-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3568999999999997543
No 170
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=65.28 E-value=4 Score=43.89 Aligned_cols=36 Identities=25% Similarity=0.090 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhcC---ceeeeCCCCCchhHHHHHH
Q psy11433 443 EQYAYMVELKKALDAKG---HCLLEMPSGTGKTTSLLSL 478 (941)
Q Consensus 443 ~Q~~~M~~v~~al~~~~---~~iiEaPTGTGKTls~L~~ 478 (941)
+|.+.+..+...+..|+ .+++.+|+|||||...-..
T Consensus 30 g~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~l 68 (324)
T 3u61_B 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKAL 68 (324)
T ss_dssp CCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHH
Confidence 45667788888888764 4577888999999765543
No 171
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=64.99 E-value=5.2 Score=41.09 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=21.7
Q ss_pred HHHHHHHHHHh---cCceeeeCCCCCchhHHHHHH
Q psy11433 447 YMVELKKALDA---KGHCLLEMPSGTGKTTSLLSL 478 (941)
Q Consensus 447 ~M~~v~~al~~---~~~~iiEaPTGTGKTls~L~~ 478 (941)
++..+..-+.+ +.+.++-+|.|||||...++.
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~al 78 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSF 78 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHH
Confidence 45555554443 236999999999999766443
No 172
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=64.43 E-value=3.9 Score=43.43 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhcC--ceeeeCCCCCchhHHHHHH
Q psy11433 443 EQYAYMVELKKALDAKG--HCLLEMPSGTGKTTSLLSL 478 (941)
Q Consensus 443 ~Q~~~M~~v~~al~~~~--~~iiEaPTGTGKTls~L~~ 478 (941)
+|.+.+..+...+..++ +++|.||+|||||...-..
T Consensus 25 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l 62 (323)
T 1sxj_B 25 GNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCL 62 (323)
T ss_dssp SCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHH
Confidence 45566778888888764 6999999999999754433
No 173
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=64.33 E-value=2.4 Score=46.96 Aligned_cols=47 Identities=19% Similarity=0.095 Sum_probs=31.5
Q ss_pred HHHHHHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 73 FLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 73 ~~aR~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
...+.....++|+|+++..|++...+.. ..+..-.+|||||||.+.+
T Consensus 143 ~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~~~~~~~~iViDEah~~~~ 189 (417)
T 2i4i_A 143 QQIRDLERGCHLLVATPGRLVDMMERGK--IGLDFCKYLVLDEADRMLD 189 (417)
T ss_dssp HHHHHHTTCCSEEEECHHHHHHHHHTTS--BCCTTCCEEEESSHHHHHH
T ss_pred HHHHHhhCCCCEEEEChHHHHHHHHcCC--cChhhCcEEEEEChhHhhc
Confidence 3344555678999999988875432221 2234567999999998643
No 174
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=64.32 E-value=4.7 Score=55.85 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHH
Q psy11433 440 IYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSL 475 (941)
Q Consensus 440 py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~ 475 (941)
|+..-..+..-+..++..++++++-||||||||+..
T Consensus 1249 pT~DT~R~~~ll~~~l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1249 PTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp CCHHHHHHHHHHHHHHHHTCEEEEECSTTSSHHHHH
T ss_pred eccchHHHHHHHHHHHHCCCeEEEECCCCCCHHHHH
Confidence 566666677777888889999999999999999843
No 175
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=63.93 E-value=1.5 Score=48.22 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=27.1
Q ss_pred cCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCcccc
Q psy11433 81 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120 (941)
Q Consensus 81 ~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~ 120 (941)
.++|+|+++..|++..... ...+..-.+|||||||.+.
T Consensus 128 ~~~iiv~T~~~l~~~~~~~--~~~~~~~~~vViDEaH~~~ 165 (391)
T 1xti_A 128 CPHIVVGTPGRILALARNK--SLNLKHIKHFILDECDKML 165 (391)
T ss_dssp CCSEEEECHHHHHHHHHTT--SSCCTTCSEEEECSHHHHT
T ss_pred CCCEEEECHHHHHHHHHcC--CccccccCEEEEeCHHHHh
Confidence 4799999999887643222 1224456899999999884
No 176
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=63.64 E-value=4.5 Score=44.08 Aligned_cols=32 Identities=44% Similarity=0.472 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhc-------CceeeeCCCCCchhHHH
Q psy11433 444 QYAYMVELKKALDAK-------GHCLLEMPSGTGKTTSL 475 (941)
Q Consensus 444 Q~~~M~~v~~al~~~-------~~~iiEaPTGTGKTls~ 475 (941)
|....+.+..++..+ .+++|-+|+|+|||..+
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH
Confidence 445566666666655 78999999999999643
No 177
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=63.60 E-value=5.3 Score=41.33 Aligned_cols=31 Identities=19% Similarity=0.102 Sum_probs=25.5
Q ss_pred HhcCceeeeCCCCCchhHHHHHHHHHHHhcC
Q psy11433 456 DAKGHCLLEMPSGTGKTTSLLSLIVAYMNAH 486 (941)
Q Consensus 456 ~~~~~~iiEaPTGTGKTls~L~~al~~~~~~ 486 (941)
..|...++-+|+|+|||.++|-.+..+....
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g 40 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYAD 40 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 4678999999999999999988887776543
No 178
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=63.23 E-value=3.3 Score=50.42 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhc-----------CceeeeCCCCCchhHHHH
Q psy11433 443 EQYAYMVELKKALDAK-----------GHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 443 ~Q~~~M~~v~~al~~~-----------~~~iiEaPTGTGKTls~L 476 (941)
+|.+.+..+..++... ++++|.+|||||||...-
T Consensus 462 g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 462 GQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHH
Confidence 4667777777777632 269999999999997543
No 179
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=63.09 E-value=2.6 Score=46.00 Aligned_cols=34 Identities=29% Similarity=0.285 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHH------HhcCceeeeCCCCCchhHHHHH
Q psy11433 444 QYAYMVELKKAL------DAKGHCLLEMPSGTGKTTSLLS 477 (941)
Q Consensus 444 Q~~~M~~v~~al------~~~~~~iiEaPTGTGKTls~L~ 477 (941)
+.+-+..+...+ ..+.++++-+|+|||||..+-.
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~ 63 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARL 63 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHH
Confidence 444455555555 2457899999999999975433
No 180
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=63.07 E-value=2.1 Score=50.95 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=13.5
Q ss_pred ceeeeCCCCCchhH
Q psy11433 460 HCLLEMPSGTGKTT 473 (941)
Q Consensus 460 ~~iiEaPTGTGKTl 473 (941)
++++.+|+|||||.
T Consensus 329 ~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 329 HILIIGDPGTAKSQ 342 (595)
T ss_dssp CEEEEESSCCTHHH
T ss_pred ceEEECCCchHHHH
Confidence 89999999999997
No 181
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=62.73 E-value=2.1 Score=47.40 Aligned_cols=44 Identities=20% Similarity=0.138 Sum_probs=30.1
Q ss_pred HHHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 76 RQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 76 R~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
+..-..++|+|+++..|++...+. ...+..-.+|||||||.+.+
T Consensus 150 ~~~~~~~~ivv~Tp~~l~~~l~~~--~~~~~~~~~vViDEah~~~~ 193 (410)
T 2j0s_A 150 RKLDYGQHVVAGTPGRVFDMIRRR--SLRTRAIKMLVLDEADEMLN 193 (410)
T ss_dssp HHHHHCCSEEEECHHHHHHHHHTT--SSCCTTCCEEEEETHHHHTS
T ss_pred HHhhcCCCEEEcCHHHHHHHHHhC--CccHhheeEEEEccHHHHHh
Confidence 444457899999998887643332 22234467999999998743
No 182
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=62.47 E-value=2.8 Score=47.45 Aligned_cols=46 Identities=20% Similarity=0.125 Sum_probs=31.9
Q ss_pred HHHHHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 74 LARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 74 ~aR~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
..+.....++|+|+++.-|++...+. ...+.+-.+|||||||.+.+
T Consensus 172 ~~~~l~~~~~Ivv~Tp~~l~~~l~~~--~~~l~~~~~lVlDEah~~~~ 217 (434)
T 2db3_A 172 QNECITRGCHVVIATPGRLLDFVDRT--FITFEDTRFVVLDEADRMLD 217 (434)
T ss_dssp HHHHHTTCCSEEEECHHHHHHHHHTT--SCCCTTCCEEEEETHHHHTS
T ss_pred HHHHhhcCCCEEEEChHHHHHHHHhC--CcccccCCeEEEccHhhhhc
Confidence 34444567899999999887643222 22344568999999998854
No 183
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.27 E-value=4.8 Score=46.81 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=16.4
Q ss_pred CceeeeCCCCCchhHHHHHH
Q psy11433 459 GHCLLEMPSGTGKTTSLLSL 478 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~L~~ 478 (941)
..++|.+|+|||||...-..
T Consensus 78 ~~lLL~GppGtGKTtla~~l 97 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLV 97 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 68999999999999755433
No 184
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=62.20 E-value=1.8 Score=47.79 Aligned_cols=40 Identities=18% Similarity=0.080 Sum_probs=28.4
Q ss_pred hcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 80 IHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 80 ~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
..++|+|+++..|++...+.. ..+..-.+|||||||.+.+
T Consensus 158 ~~~~iiv~T~~~l~~~l~~~~--~~~~~~~~vViDEah~~~~ 197 (414)
T 3eiq_A 158 EAPHIIVGTPGRVFDMLNRRY--LSPKYIKMFVLDEADEMLS 197 (414)
T ss_dssp TCCSEEEECHHHHHHHHHHTS--SCSTTCCEEEECSHHHHHH
T ss_pred CCCCEEEECHHHHHHHHHcCC--cccccCcEEEEECHHHhhc
Confidence 578999999988876543322 2233457999999999743
No 185
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=61.89 E-value=5.4 Score=55.94 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHH
Q psy11433 440 IYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTS 474 (941)
Q Consensus 440 py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls 474 (941)
|+..=..+..-+...+..|+++++.||||||||..
T Consensus 1286 PT~DTvR~~~ll~~ll~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1286 PTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCEEESSTTSSHHHH
T ss_pred cchHHHHHHHHHHHHHHCCCcEEEECCCCCCHHHH
Confidence 55555566666777788999999999999999964
No 186
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=61.05 E-value=4 Score=50.57 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhc-----------CceeeeCCCCCchhHHH
Q psy11433 443 EQYAYMVELKKALDAK-----------GHCLLEMPSGTGKTTSL 475 (941)
Q Consensus 443 ~Q~~~M~~v~~al~~~-----------~~~iiEaPTGTGKTls~ 475 (941)
+|.+.|..+..++... .+++|.+|||||||...
T Consensus 562 G~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 562 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 605 (854)
T ss_dssp SCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 4677788888777743 47899999999999743
No 187
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=61.04 E-value=2.8 Score=48.36 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=30.5
Q ss_pred HHHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 76 RQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 76 R~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
+.....+||||+++..|.+......+ ..+..-.+|||||||.+.+
T Consensus 100 ~~~~~~~~i~v~T~~~l~~~~~~~~~-~~~~~~~~vViDEah~~~~ 144 (556)
T 4a2p_A 100 EKVIEDSDIIVVTPQILVNSFEDGTL-TSLSIFTLMIFDECHNTTG 144 (556)
T ss_dssp HHHHHHCSEEEECHHHHHHHHHSSSC-CCSTTCSEEEEETGGGCST
T ss_pred HHhhCCCCEEEECHHHHHHHHHhCcc-cccccCCEEEEECCcccCC
Confidence 34446789999999988764322211 1234457999999999954
No 188
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=61.03 E-value=3.7 Score=45.34 Aligned_cols=19 Identities=37% Similarity=0.385 Sum_probs=15.6
Q ss_pred CceeeeCCCCCchhHHHHH
Q psy11433 459 GHCLLEMPSGTGKTTSLLS 477 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~L~ 477 (941)
+.++|-+|+|||||+..-.
T Consensus 85 ~~iLL~GppGtGKT~la~a 103 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKA 103 (355)
T ss_dssp CCEEEECSTTSCHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHH
Confidence 5689999999999975443
No 189
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=60.89 E-value=4.9 Score=43.68 Aligned_cols=18 Identities=39% Similarity=0.338 Sum_probs=15.1
Q ss_pred CceeeeCCCCCchhHHHH
Q psy11433 459 GHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~L 476 (941)
+.++|.+|+|||||+..-
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp SEEEEESSSSSCHHHHHH
T ss_pred ceEEEECCCCccHHHHHH
Confidence 579999999999997543
No 190
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=60.70 E-value=2.6 Score=50.50 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=28.5
Q ss_pred HHhhcCcEEEEccccccChhhhh----HhhhhcCCCcEEEEecCccc
Q psy11433 77 QAIIHAKIVVYSYHYLLDPKIAN----VVSKELARSSVVVFDEAHNI 119 (941)
Q Consensus 77 ~~~~~AdIVv~~y~yLl~~~~r~----~~~~~l~~~~ivI~DEAHNL 119 (941)
.....++|||+++..|++...+. .-...+..-.+|||||||++
T Consensus 102 ~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~ 148 (699)
T 4gl2_A 102 EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHT 148 (699)
T ss_dssp HHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGC
T ss_pred hhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECcccc
Confidence 34468999999999887543211 11122334579999999998
No 191
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=60.54 E-value=4.5 Score=49.36 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHH--hcCceeeeCCCCCchhHHHHHHH
Q psy11433 443 EQYAYMVELKKALD--AKGHCLLEMPSGTGKTTSLLSLI 479 (941)
Q Consensus 443 ~Q~~~M~~v~~al~--~~~~~iiEaPTGTGKTls~L~~a 479 (941)
+|.+.|+.+...+. .+.+++|.+|+|||||...-..+
T Consensus 184 G~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la 222 (758)
T 3pxi_A 184 GRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLA 222 (758)
T ss_dssp CCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHH
T ss_pred CchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHH
Confidence 46677888888886 45699999999999998554433
No 192
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=60.41 E-value=8.7 Score=41.91 Aligned_cols=18 Identities=39% Similarity=0.405 Sum_probs=15.4
Q ss_pred ceeeeCCCCCchhHHHHH
Q psy11433 460 HCLLEMPSGTGKTTSLLS 477 (941)
Q Consensus 460 ~~iiEaPTGTGKTls~L~ 477 (941)
++++.+|+|||||..+-.
T Consensus 46 ~~li~G~~G~GKTtl~~~ 63 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRK 63 (389)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 799999999999976543
No 193
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=60.10 E-value=6.4 Score=40.04 Aligned_cols=38 Identities=24% Similarity=0.185 Sum_probs=27.0
Q ss_pred hcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEec
Q psy11433 457 AKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCS 497 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct 497 (941)
.|...++.||+|+|||.-.+-.+...+...+ .+++|.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~---~~v~~~s 66 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcC---CCceeec
Confidence 6789999999999999877766665444322 3455555
No 194
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=59.52 E-value=12 Score=48.50 Aligned_cols=66 Identities=24% Similarity=0.400 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcC--CCCCceEEEeccccchhHHHHHHHH
Q psy11433 440 IYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAH--PLDVTKLLYCSRTVPEIEKVVEELA 511 (941)
Q Consensus 440 py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~--~~~~~ki~~ct~t~~q~~q~i~el~ 511 (941)
+.+.|.+.+.. .++++++.|+-|||||-+++-=++.-+... +.+..+|++.|-|......+-+-+.
T Consensus 11 ~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~ 78 (1232)
T 3u4q_A 11 WTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIA 78 (1232)
T ss_dssp CCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHH
Confidence 57899766542 478999999999999987776655544432 2245678999998766444444443
No 195
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=58.84 E-value=4.4 Score=42.47 Aligned_cols=19 Identities=37% Similarity=0.373 Sum_probs=15.8
Q ss_pred CceeeeCCCCCchhHHHHH
Q psy11433 459 GHCLLEMPSGTGKTTSLLS 477 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~L~ 477 (941)
.+++|.+|+|||||...-.
T Consensus 65 ~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 5899999999999975443
No 196
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=58.81 E-value=7.3 Score=41.64 Aligned_cols=17 Identities=18% Similarity=-0.087 Sum_probs=14.1
Q ss_pred CceeeeCCCCCchhHHH
Q psy11433 459 GHCLLEMPSGTGKTTSL 475 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~ 475 (941)
..+++.+|+|||||...
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999743
No 197
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=57.82 E-value=3.6 Score=47.95 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=28.9
Q ss_pred hcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 80 IHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 80 ~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
..++|||+++..|++...+. ....+..-.+|||||||.+.+
T Consensus 200 ~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~l~~ 240 (563)
T 3i5x_A 200 LRPNIVIATPGRLIDVLEKY-SNKFFRFVDYKVLDEADRLLE 240 (563)
T ss_dssp HCCSEEEECHHHHHHHHHHH-HHHHCTTCCEEEEETHHHHTS
T ss_pred CCCCEEEECcHHHHHHHHhc-cccccccceEEEEeCHHHHhc
Confidence 37899999999887643222 122344567999999999854
No 198
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=57.80 E-value=2.8 Score=48.13 Aligned_cols=44 Identities=20% Similarity=0.388 Sum_probs=29.7
Q ss_pred HHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 77 QAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 77 ~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
.....++|+|+++..|.+......+ ..+..-.+|||||||.+.+
T Consensus 98 ~~~~~~~i~v~T~~~l~~~~~~~~~-~~~~~~~~vViDEah~~~~ 141 (555)
T 3tbk_A 98 HIIEDNDIIILTPQILVNNLNNGAI-PSLSVFTLMIFDECHNTSK 141 (555)
T ss_dssp HHHHHCSEEEECHHHHHHHHHTSSS-CCGGGCSEEEETTGGGCST
T ss_pred HHhcCCCEEEECHHHHHHHHhcCcc-cccccCCEEEEECccccCC
Confidence 3445789999999988764322211 0233457999999999954
No 199
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=57.54 E-value=3.8 Score=49.12 Aligned_cols=42 Identities=19% Similarity=0.391 Sum_probs=29.3
Q ss_pred HhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCcccc
Q psy11433 78 AIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120 (941)
Q Consensus 78 ~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~ 120 (941)
....++|||+++..|++......+ ..+..-.+|||||||++.
T Consensus 108 ~~~~~~Iiv~Tp~~L~~~l~~~~~-~~l~~~~~vViDEaH~~~ 149 (696)
T 2ykg_A 108 IVENNDIIILTPQILVNNLKKGTI-PSLSIFTLMIFDECHNTS 149 (696)
T ss_dssp HHHTCSEEEECHHHHHHHHHTTSS-CCGGGCSEEEEETGGGCS
T ss_pred hccCCCEEEECHHHHHHHHhcCcc-cccccccEEEEeCCCccc
Confidence 345789999999988764432211 023345799999999985
No 200
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=56.45 E-value=4.5 Score=50.92 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=26.4
Q ss_pred cCcEEEEccccccChhh-hhHhhhhcCCCcEEEEecCcccc
Q psy11433 81 HAKIVVYSYHYLLDPKI-ANVVSKELARSSVVVFDEAHNID 120 (941)
Q Consensus 81 ~AdIVv~~y~yLl~~~~-r~~~~~~l~~~~ivI~DEAHNL~ 120 (941)
..||||++|..+....- ...+.. ..-..|||||||++-
T Consensus 248 ~~dIvI~T~~~L~~~~~~~~~l~~--~~~dlVIvDEAH~~k 286 (968)
T 3dmq_A 248 TEQLVICSLDFARRSKQRLEHLCE--AEWDLLVVDEAHHLV 286 (968)
T ss_dssp TCSEEEECHHHHHTSTTTTHHHHT--SCCCEEEECCSSCCC
T ss_pred cCCEEEEcHHHHhhCHHHHHHhhh--cCCCEEEehhhHhhc
Confidence 56999999998865322 222221 245799999999994
No 201
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=56.13 E-value=10 Score=44.15 Aligned_cols=38 Identities=13% Similarity=0.314 Sum_probs=28.4
Q ss_pred hcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEE
Q psy11433 457 AKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLL 494 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~ 494 (941)
.+.|+++-++||+|||..+-+.+++.+..+.++..+++
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~ 203 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFI 203 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEE
Confidence 57899999999999999887777666655443444444
No 202
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=56.10 E-value=6.2 Score=44.93 Aligned_cols=18 Identities=39% Similarity=0.338 Sum_probs=15.3
Q ss_pred CceeeeCCCCCchhHHHH
Q psy11433 459 GHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~L 476 (941)
+.++|.+|+|||||+..-
T Consensus 168 ~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 679999999999997543
No 203
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=56.03 E-value=5.8 Score=45.91 Aligned_cols=19 Identities=42% Similarity=0.363 Sum_probs=15.8
Q ss_pred cCceeeeCCCCCchhHHHH
Q psy11433 458 KGHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTls~L 476 (941)
...++|.+|+|||||+..-
T Consensus 238 ~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHH
Confidence 3679999999999998543
No 204
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=55.13 E-value=7.1 Score=41.80 Aligned_cols=34 Identities=24% Similarity=0.146 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHH
Q psy11433 440 IYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 440 py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L 476 (941)
.|+.+. +.+.+.+..|+.+++.+|.|+|||.-+-
T Consensus 16 gR~~el---~~L~~~l~~~~~v~i~G~~G~GKT~Ll~ 49 (350)
T 2qen_A 16 DREEES---RKLEESLENYPLTLLLGIRRVGKSSLLR 49 (350)
T ss_dssp SCHHHH---HHHHHHHHHCSEEEEECCTTSSHHHHHH
T ss_pred ChHHHH---HHHHHHHhcCCeEEEECCCcCCHHHHHH
Confidence 355554 4455566667999999999999997443
No 205
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=54.49 E-value=7.8 Score=44.32 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.4
Q ss_pred cCceeeeCCCCCchhHHH
Q psy11433 458 KGHCLLEMPSGTGKTTSL 475 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTls~ 475 (941)
.+++++.+|+|||||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 368999999999999743
No 206
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.40 E-value=5.8 Score=45.25 Aligned_cols=18 Identities=39% Similarity=0.394 Sum_probs=15.2
Q ss_pred CceeeeCCCCCchhHHHH
Q psy11433 459 GHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~L 476 (941)
+.+++-+|+|||||+..=
T Consensus 216 rGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred CeeEEECcCCCCHHHHHH
Confidence 579999999999997533
No 207
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=54.06 E-value=6.1 Score=46.47 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=23.0
Q ss_pred hhcCcEEEEccccccChhhhhHhhhhc--CCCcEEEEecCccccH
Q psy11433 79 IIHAKIVVYSYHYLLDPKIANVVSKEL--ARSSVVVFDEAHNIDN 121 (941)
Q Consensus 79 ~~~AdIVv~~y~yLl~~~~r~~~~~~l--~~~~ivI~DEAHNL~d 121 (941)
-..++|+|++|.-|............+ ....+|||||||.+..
T Consensus 272 ~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~ 316 (590)
T 3h1t_A 272 VKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSA 316 (590)
T ss_dssp CSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----
T ss_pred CCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccc
Confidence 457799999999987643211111112 2357999999999843
No 208
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=53.76 E-value=11 Score=44.52 Aligned_cols=41 Identities=15% Similarity=0.305 Sum_probs=31.4
Q ss_pred hcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEec
Q psy11433 457 AKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCS 497 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct 497 (941)
...|+++-+.||+|||.++-..+++.+..+.++..+++.+.
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilID 253 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMID 253 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEEC
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeC
Confidence 46899999999999999988888777766554555555443
No 209
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.15 E-value=6.6 Score=44.33 Aligned_cols=18 Identities=39% Similarity=0.385 Sum_probs=15.3
Q ss_pred CceeeeCCCCCchhHHHH
Q psy11433 459 GHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~L 476 (941)
+-+++-+|+|||||+..=
T Consensus 183 rGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CCEEEESCSSSSHHHHHH
T ss_pred CceEEeCCCCCCHHHHHH
Confidence 679999999999998533
No 210
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=53.04 E-value=12 Score=39.89 Aligned_cols=32 Identities=22% Similarity=0.074 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhc----CceeeeCCCCCchhHHHHHH
Q psy11433 447 YMVELKKALDAK----GHCLLEMPSGTGKTTSLLSL 478 (941)
Q Consensus 447 ~M~~v~~al~~~----~~~iiEaPTGTGKTls~L~~ 478 (941)
+...++.-+... ..++|-+|+|||||+...+.
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~al 124 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAI 124 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHH
Confidence 344455555532 36999999999999866644
No 211
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=52.24 E-value=5 Score=47.13 Aligned_cols=40 Identities=23% Similarity=0.159 Sum_probs=28.3
Q ss_pred cCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 81 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 81 ~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
.++|||++..-|++...+. ....+..-.+|||||||.+.+
T Consensus 150 ~~~IlV~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~l~~ 189 (579)
T 3sqw_A 150 RPNIVIATPGRLIDVLEKY-SNKFFRFVDYKVLDEADRLLE 189 (579)
T ss_dssp CCSEEEECHHHHHHHHHHH-HHHHCTTCCEEEEETHHHHTS
T ss_pred CCCEEEECHHHHHHHHHhc-cccccccCCEEEEEChHHhhc
Confidence 6899999998887643222 122344567999999998854
No 212
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.59 E-value=6.8 Score=44.70 Aligned_cols=20 Identities=40% Similarity=0.416 Sum_probs=16.2
Q ss_pred CceeeeCCCCCchhHHHHHH
Q psy11433 459 GHCLLEMPSGTGKTTSLLSL 478 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~L~~ 478 (941)
+-+|+-+|+|||||+..=+.
T Consensus 216 rGvLL~GPPGtGKTllAkAi 235 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAV 235 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 67999999999999854443
No 213
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=51.23 E-value=6.8 Score=42.53 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=16.6
Q ss_pred cCceeeeCCCCCchhHHHHH
Q psy11433 458 KGHCLLEMPSGTGKTTSLLS 477 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTls~L~ 477 (941)
+..+++-+|+|||||..+-.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 57899999999999975443
No 214
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=50.70 E-value=7 Score=43.41 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=26.5
Q ss_pred CcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 82 AKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 82 AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
++|+|++...|++.. .. ..+..-.+|||||||.+.+
T Consensus 118 ~~Iiv~Tp~~l~~~l-~~---~~~~~~~~iViDEaH~~~~ 153 (414)
T 3oiy_A 118 YHILVFSTQFVSKNR-EK---LSQKRFDFVFVDDVDAVLK 153 (414)
T ss_dssp CSEEEEEHHHHHHCH-HH---HTTCCCSEEEESCHHHHHH
T ss_pred CCEEEECHHHHHHHH-HH---hccccccEEEEeChHhhhh
Confidence 899999998886532 21 2233568999999999864
No 215
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=50.38 E-value=2.6 Score=46.48 Aligned_cols=39 Identities=23% Similarity=0.099 Sum_probs=25.5
Q ss_pred cCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCcccc
Q psy11433 81 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120 (941)
Q Consensus 81 ~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~ 120 (941)
.++|+|+++..|++..... -...+.+-.+|||||||.+.
T Consensus 143 ~~~ivv~T~~~l~~~~~~~-~~~~~~~~~~iViDEah~~~ 181 (412)
T 3fht_A 143 SEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEADVMI 181 (412)
T ss_dssp CCSEEEECHHHHHHHHTTS-CSSCGGGCCEEEEETHHHHH
T ss_pred CCCEEEECchHHHHHHHhc-CCcChhhCcEEEEeCHHHHh
Confidence 4689999998886533211 11122346799999999763
No 216
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.08 E-value=7.4 Score=44.30 Aligned_cols=19 Identities=42% Similarity=0.473 Sum_probs=15.3
Q ss_pred CceeeeCCCCCchhHHHHH
Q psy11433 459 GHCLLEMPSGTGKTTSLLS 477 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~L~ 477 (941)
+-+++-+|+|||||+..=+
T Consensus 207 rGiLL~GPPGtGKT~lakA 225 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKA 225 (428)
T ss_dssp CEEEEESCTTTTHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4589999999999985443
No 217
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=50.03 E-value=5.6 Score=45.17 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=24.7
Q ss_pred cCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCcccc
Q psy11433 81 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120 (941)
Q Consensus 81 ~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~ 120 (941)
.++|+|++|..++.+. +.+. .+-.+|||||||++.
T Consensus 171 ~~~Ivv~T~~~l~~~~--~~~~---~~~~liIvDEaH~~~ 205 (472)
T 2fwr_A 171 LKPLTVSTYDSAYVNA--EKLG---NRFMLLIFDEVHHLP 205 (472)
T ss_dssp CCSEEEEEHHHHHHTH--HHHT---TTCSEEEEETGGGTT
T ss_pred cCCEEEEEcHHHHHHH--HHhc---CCCCEEEEECCcCCC
Confidence 4689999998776432 1121 235799999999985
No 218
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=49.80 E-value=15 Score=37.09 Aligned_cols=29 Identities=24% Similarity=0.230 Sum_probs=23.8
Q ss_pred hcCceeeeCCCCCchhHHHHHHHHHHHhc
Q psy11433 457 AKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L~~al~~~~~ 485 (941)
.|...++-+|+|+|||.-.+..+...+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~ 50 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM 50 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 67899999999999998877666666553
No 219
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=49.67 E-value=10 Score=44.14 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCceeeeCCCCCchhHH
Q psy11433 447 YMVELKKALDAKGHCLLEMPSGTGKTTS 474 (941)
Q Consensus 447 ~M~~v~~al~~~~~~iiEaPTGTGKTls 474 (941)
.+..+.-++..|.+.++-+|||+|||-.
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 3455566778899999999999999953
No 220
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=49.66 E-value=3.6 Score=47.60 Aligned_cols=40 Identities=28% Similarity=0.276 Sum_probs=28.2
Q ss_pred hcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 80 IHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 80 ~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
..++|||+++..|++...+.. ..+..-.+|||||||.+.+
T Consensus 234 ~~~~Ivv~T~~~l~~~l~~~~--~~~~~~~lIIiDEaH~~~~ 273 (508)
T 3fho_A 234 IDAQIVIGTPGTVMDLMKRRQ--LDARDIKVFVLDEADNMLD 273 (508)
T ss_dssp CCCSEEEECHHHHHHHHHTTC--SCCTTCCEEEECCHHHHTT
T ss_pred CCCCEEEECHHHHHHHHHcCC--ccccCCCEEEEechhhhcc
Confidence 378999999988876433322 2234568999999998853
No 221
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=49.59 E-value=4.6 Score=49.57 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=30.3
Q ss_pred HHHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 76 RQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 76 R~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
+.....+||||+++..|++...+..+ ..+..-.+|||||||++.+
T Consensus 341 ~~~~~~~~Ivv~Tp~~l~~~l~~~~~-~~~~~~~~iViDEaH~~~~ 385 (797)
T 4a2q_A 341 EKVIEDSDIIVVTPQILVNSFEDGTL-TSLSIFTLMIFDECHNTTG 385 (797)
T ss_dssp HHHHHTCSEEEECHHHHHHHHHSSSC-CCGGGCSEEEETTGGGCST
T ss_pred HHhhCCCCEEEEchHHHHHHHHhccc-cccccCCEEEEECccccCC
Confidence 34456889999999988764322211 0233457999999999854
No 222
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.56 E-value=5.7 Score=43.06 Aligned_cols=35 Identities=31% Similarity=0.349 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHH-Hhc--CceeeeCCCCCchhHHHHH
Q psy11433 443 EQYAYMVELKKAL-DAK--GHCLLEMPSGTGKTTSLLS 477 (941)
Q Consensus 443 ~Q~~~M~~v~~al-~~~--~~~iiEaPTGTGKTls~L~ 477 (941)
+|.+.+..+.+++ ..+ .+.+|-+|+|||||..+-+
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ 55 (354)
T 1sxj_E 18 HNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMA 55 (354)
T ss_dssp SCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHT
T ss_pred CCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHH
Confidence 4666777787777 544 4699999999999975443
No 223
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=49.43 E-value=5.7 Score=45.59 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=27.2
Q ss_pred hcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 80 IHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 80 ~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
..++|+|++|.-|+.+.. ..+.+-.+|||||||.+..
T Consensus 203 ~~~~I~i~T~~~l~~~~~-----~~~~~~~liIiDE~H~~~~ 239 (510)
T 2oca_A 203 NDAPVVVGTWQTVVKQPK-----EWFSQFGMMMNDECHLATG 239 (510)
T ss_dssp TTCSEEEEEHHHHTTSCG-----GGGGGEEEEEEETGGGCCH
T ss_pred cCCcEEEEeHHHHhhchh-----hhhhcCCEEEEECCcCCCc
Confidence 578999999998776521 1122347999999999954
No 224
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=48.46 E-value=19 Score=37.07 Aligned_cols=16 Identities=44% Similarity=0.511 Sum_probs=13.4
Q ss_pred ceeeeCCCCCchhHHH
Q psy11433 460 HCLLEMPSGTGKTTSL 475 (941)
Q Consensus 460 ~~iiEaPTGTGKTls~ 475 (941)
.+++-+|+|||||..+
T Consensus 51 g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLA 66 (254)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3899999999999643
No 225
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=48.21 E-value=6.5 Score=48.29 Aligned_cols=36 Identities=19% Similarity=0.532 Sum_probs=25.2
Q ss_pred hcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccc
Q psy11433 80 IHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119 (941)
Q Consensus 80 ~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL 119 (941)
..+||||++|..+.... ..+.. . .-..|||||||++
T Consensus 344 ~~~dvvitTy~~l~~~~--~~l~~-~-~w~~vIvDEaH~l 379 (800)
T 3mwy_W 344 MKFNVLLTTYEYILKDR--AELGS-I-KWQFMAVDEAHRL 379 (800)
T ss_dssp CCCSEEEECTTHHHHTH--HHHHT-S-EEEEEEETTGGGG
T ss_pred ccCCEEEecHHHHHhhH--HHHhc-C-Ccceeehhhhhhh
Confidence 35789999999886432 22221 1 3468999999998
No 226
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=48.07 E-value=6.9 Score=38.42 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=17.1
Q ss_pred HHHHhcCceeeeCCCCCchhH
Q psy11433 453 KALDAKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 453 ~al~~~~~~iiEaPTGTGKTl 473 (941)
..+..+..+++.+|+|+|||-
T Consensus 7 ~~~~~~~~I~l~G~~GsGKsT 27 (199)
T 2bwj_A 7 EDLRKCKIIFIIGGPGSGKGT 27 (199)
T ss_dssp HHHHHSCEEEEEECTTSSHHH
T ss_pred cccCCCCEEEEECCCCCCHHH
Confidence 344567889999999999985
No 227
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=47.70 E-value=13 Score=51.63 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHH
Q psy11433 440 IYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSL 478 (941)
Q Consensus 440 py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~ 478 (941)
+.+.+..-+-++++++.....+|+-||||+|||.++=..
T Consensus 905 ~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~L 943 (2695)
T 4akg_A 905 MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTV 943 (2695)
T ss_dssp CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHH
Confidence 345566666778888888889999999999999875443
No 228
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=47.33 E-value=10 Score=41.89 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCceeeeCCCCCchhH
Q psy11433 448 MVELKKALDAKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 448 M~~v~~al~~~~~~iiEaPTGTGKTl 473 (941)
.+.+--++..|+..++-+|||+|||-
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHH
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHH
Confidence 36677788899999999999999995
No 229
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.17 E-value=8.7 Score=43.71 Aligned_cols=19 Identities=32% Similarity=0.258 Sum_probs=15.7
Q ss_pred CceeeeCCCCCchhHHHHH
Q psy11433 459 GHCLLEMPSGTGKTTSLLS 477 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~L~ 477 (941)
+-+|+-+|+|||||+..-+
T Consensus 217 rGvLLyGPPGTGKTlLAkA 235 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKA 235 (437)
T ss_dssp SEEEEESSTTTTHHHHHHH
T ss_pred CCCceECCCCchHHHHHHH
Confidence 5799999999999985433
No 230
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.10 E-value=8.4 Score=44.23 Aligned_cols=18 Identities=44% Similarity=0.457 Sum_probs=15.2
Q ss_pred cCceeeeCCCCCchhHHH
Q psy11433 458 KGHCLLEMPSGTGKTTSL 475 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTls~ 475 (941)
.+-+|+-+|+|||||+..
T Consensus 243 prGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSEEEECSCTTSSHHHHH
T ss_pred CCceEeeCCCCCcHHHHH
Confidence 367999999999999743
No 231
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=46.58 E-value=5.2 Score=50.12 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=29.8
Q ss_pred HHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 77 QAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 77 ~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
.....+||||+++.-|.+...+..+ ..+..-.+|||||||++.+
T Consensus 342 ~~~~~~~IvI~Tp~~L~~~l~~~~~-~~l~~~~liViDEaH~~~~ 385 (936)
T 4a2w_A 342 KVIEDSDIIVVTPQILVNSFEDGTL-TSLSIFTLMIFDECHNTTG 385 (936)
T ss_dssp HHHHHCSEEEECHHHHHHHHHSSSC-CCGGGCSEEEEETGGGCST
T ss_pred HhccCCCEEEecHHHHHHHHHcCcc-ccccCCCEEEEECccccCC
Confidence 3446789999999988764322211 1233457999999999854
No 232
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=45.30 E-value=3.4 Score=44.48 Aligned_cols=39 Identities=23% Similarity=0.099 Sum_probs=24.7
Q ss_pred cCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCcccc
Q psy11433 81 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120 (941)
Q Consensus 81 ~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~ 120 (941)
.++|||++..-|++...+.. ...+..-.+|||||||.+.
T Consensus 210 ~~~IlV~TP~~l~~~l~~~~-~~~l~~l~~lVlDEad~l~ 248 (300)
T 3fmo_B 210 SEQIVIGTPGTVLDWCSKLK-FIDPKKIKVFVLDEADVMI 248 (300)
T ss_dssp CCSEEEECHHHHHHHHTTTC-CCCGGGCSEEEETTHHHHH
T ss_pred CCCEEEECHHHHHHHHHhcC-CCChhhceEEEEeCHHHHh
Confidence 45899988776654322211 1223345799999999884
No 233
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=44.54 E-value=13 Score=40.66 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCceeeeCCCCCchhH
Q psy11433 446 AYMVELKKALDAKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 446 ~~M~~v~~al~~~~~~iiEaPTGTGKTl 473 (941)
.....+--.+..|+..++-+|||+|||-
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHH
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHH
Confidence 3556677778899999999999999996
No 234
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=44.43 E-value=7.5 Score=46.49 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=24.2
Q ss_pred cCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCcccc
Q psy11433 81 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120 (941)
Q Consensus 81 ~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~ 120 (941)
.++|+|++|..+.... +.+.. ..-.+||+||||++-
T Consensus 170 ~~~vvi~ty~~l~~~~--~~l~~--~~~~~vI~DEaH~ik 205 (644)
T 1z3i_X 170 PTPILIISYETFRLHA--EVLHK--GKVGLVICDEGHRLK 205 (644)
T ss_dssp SCCEEEEEHHHHHHHT--TTTTT--SCCCEEEETTGGGCC
T ss_pred CCcEEEeeHHHHHhhH--HHhhc--CCccEEEEECceecC
Confidence 3799999998774321 11111 234689999999994
No 235
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=44.38 E-value=23 Score=37.00 Aligned_cols=16 Identities=44% Similarity=0.511 Sum_probs=13.5
Q ss_pred ceeeeCCCCCchhHHH
Q psy11433 460 HCLLEMPSGTGKTTSL 475 (941)
Q Consensus 460 ~~iiEaPTGTGKTls~ 475 (941)
.+++-+|+|||||..+
T Consensus 75 gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLA 90 (278)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCcChHHHHH
Confidence 4899999999999643
No 236
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=44.33 E-value=15 Score=37.18 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=17.9
Q ss_pred CceeeeCCCCCchhHHHHHHHHHH
Q psy11433 459 GHCLLEMPSGTGKTTSLLSLIVAY 482 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~L~~al~~ 482 (941)
.+.++.+|.|||||.....-++..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 367899999999999765544443
No 237
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=43.88 E-value=8.2 Score=36.55 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=13.1
Q ss_pred CceeeeCCCCCchhH
Q psy11433 459 GHCLLEMPSGTGKTT 473 (941)
Q Consensus 459 ~~~iiEaPTGTGKTl 473 (941)
..+++.+|+|+|||-
T Consensus 2 ~~I~l~G~~GsGKsT 16 (179)
T 3lw7_A 2 KVILITGMPGSGKSE 16 (179)
T ss_dssp CEEEEECCTTSCHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 467899999999996
No 238
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=43.66 E-value=15 Score=39.75 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=29.6
Q ss_pred HHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEec
Q psy11433 454 ALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCS 497 (941)
Q Consensus 454 al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct 497 (941)
.+..|...++.||+|+|||.-.+..+...+..+ .+++|.+
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g----~~vl~~s 103 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDND----DVVNLHS 103 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT----CEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC----CeEEEEE
Confidence 344788999999999999988777777766543 3454444
No 239
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=43.27 E-value=8 Score=39.59 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=24.0
Q ss_pred hcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCcc
Q psy11433 80 IHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118 (941)
Q Consensus 80 ~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHN 118 (941)
..++|+|++...|++. +.. .+.+-.+|||||||.
T Consensus 154 ~~~~Ivv~Tpg~l~~~-l~~----~l~~~~~lVlDEah~ 187 (235)
T 3llm_A 154 PHASIMFCTVGVLLRK-LEA----GIRGISHVIVDEIHE 187 (235)
T ss_dssp SSSEEEEEEHHHHHHH-HHH----CCTTCCEEEECCTTS
T ss_pred CCCeEEEECHHHHHHH-HHh----hhcCCcEEEEECCcc
Confidence 3578999987666553 222 345568999999996
No 240
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=42.54 E-value=23 Score=35.04 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=23.0
Q ss_pred cCceeeeCCCCCchhHHHHHHHHHHHhc
Q psy11433 458 KGHCLLEMPSGTGKTTSLLSLIVAYMNA 485 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTls~L~~al~~~~~ 485 (941)
|...++-+|.|+|||..++-.+..+...
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~ 30 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG 30 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6778999999999999888777666544
No 241
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=42.51 E-value=15 Score=40.44 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHH-HHH-Hh----cCceee--eCCCCCchhHHHHH
Q psy11433 441 YPEQYAYMVELK-KAL-DA----KGHCLL--EMPSGTGKTTSLLS 477 (941)
Q Consensus 441 y~~Q~~~M~~v~-~al-~~----~~~~ii--EaPTGTGKTls~L~ 477 (941)
|+.+.+.+.... ... .. +.++++ .+|+|+|||..+-.
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~ 71 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKF 71 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHH
Confidence 555655555544 333 22 357888 99999999975543
No 242
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=42.49 E-value=8.9 Score=38.55 Aligned_cols=17 Identities=41% Similarity=0.413 Sum_probs=15.3
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.|..+++-+|+|+|||-
T Consensus 7 ~g~~i~l~GpsGsGKsT 23 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGT 23 (208)
T ss_dssp CCCEEEEECCTTSCHHH
T ss_pred CCcEEEEECcCCCCHHH
Confidence 57889999999999995
No 243
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=42.06 E-value=9.2 Score=37.41 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=15.1
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.|+..++-+|+|+|||-
T Consensus 4 ~g~~i~i~GpsGsGKST 20 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRH 20 (180)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 47889999999999995
No 244
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=42.05 E-value=9.2 Score=37.08 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=14.4
Q ss_pred cCceeeeCCCCCchhH
Q psy11433 458 KGHCLLEMPSGTGKTT 473 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTl 473 (941)
+..+++++|+|+|||-
T Consensus 3 ~~~I~i~G~~GsGKsT 18 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTT 18 (192)
T ss_dssp CCEEEEECCTTSCHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 5689999999999995
No 245
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=41.94 E-value=23 Score=40.77 Aligned_cols=18 Identities=44% Similarity=0.401 Sum_probs=15.0
Q ss_pred CceeeeCCCCCchhHHHH
Q psy11433 459 GHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~L 476 (941)
+.+++.+|+|||||+..=
T Consensus 50 ~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 468999999999997543
No 246
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=41.69 E-value=8.5 Score=37.99 Aligned_cols=18 Identities=39% Similarity=0.444 Sum_probs=15.7
Q ss_pred HhcCceeeeCCCCCchhH
Q psy11433 456 DAKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 456 ~~~~~~iiEaPTGTGKTl 473 (941)
..|..+++.+|+|+|||-
T Consensus 4 ~~g~~i~l~G~~GsGKST 21 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGT 21 (207)
T ss_dssp CCCCEEEEECSTTSCHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 367889999999999985
No 247
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=41.65 E-value=13 Score=43.13 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=29.1
Q ss_pred hcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 80 IHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 80 ~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
...+|++++..-|+.+...+.+.. .+-.+|||||||.+.+
T Consensus 114 ~~~~ilv~Tpe~l~~~~~~~~l~~--~~~~~vViDEaH~i~~ 153 (523)
T 1oyw_A 114 GQIRLLYIAPERLMLDNFLEHLAH--WNPVLLAVDEAHCISQ 153 (523)
T ss_dssp TCCSEEEECHHHHTSTTHHHHHTT--SCEEEEEESSGGGGCT
T ss_pred CCCCEEEECHHHHhChHHHHHHhh--CCCCEEEEeCccccCc
Confidence 357999999888877655444332 3457999999999843
No 248
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=41.24 E-value=8.7 Score=37.93 Aligned_cols=18 Identities=33% Similarity=0.649 Sum_probs=15.8
Q ss_pred HhcCceeeeCCCCCchhH
Q psy11433 456 DAKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 456 ~~~~~~iiEaPTGTGKTl 473 (941)
..|....+-+|+|+|||-
T Consensus 5 ~~g~ii~l~Gp~GsGKST 22 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTS 22 (205)
T ss_dssp CCCCEEEEECCTTSCHHH
T ss_pred CCCcEEEEECcCCCCHHH
Confidence 367889999999999995
No 249
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=40.79 E-value=27 Score=34.70 Aligned_cols=28 Identities=29% Similarity=0.191 Sum_probs=21.2
Q ss_pred hcCceeeeCCCCCchhHHHHHHHHHHHh
Q psy11433 457 AKGHCLLEMPSGTGKTTSLLSLIVAYMN 484 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L~~al~~~~ 484 (941)
.|...++-+|+|+|||.-+...+.....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999765555544443
No 250
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=40.02 E-value=23 Score=35.51 Aligned_cols=30 Identities=20% Similarity=0.067 Sum_probs=24.8
Q ss_pred hcCceeeeCCCCCchhHHHHHHHHHHHhcC
Q psy11433 457 AKGHCLLEMPSGTGKTTSLLSLIVAYMNAH 486 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L~~al~~~~~~ 486 (941)
.|+..++-+|.|+|||.++|-.+..+....
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g 36 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAK 36 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 567889999999999999998887776443
No 251
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=39.86 E-value=16 Score=41.45 Aligned_cols=41 Identities=15% Similarity=0.078 Sum_probs=30.1
Q ss_pred HHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEec
Q psy11433 454 ALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCS 497 (941)
Q Consensus 454 al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct 497 (941)
.+..|...++-||+|+|||.-.+..+...+..++ .+++|.+
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g---~~vl~~s 236 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG---VGVGIYS 236 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC---CCEEEEE
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEE
Confidence 3447889999999999999888888877776432 3454444
No 252
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=39.77 E-value=16 Score=44.32 Aligned_cols=36 Identities=28% Similarity=0.176 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHH--hcCceeeeCCCCCchhHHHHHHH
Q psy11433 444 QYAYMVELKKALD--AKGHCLLEMPSGTGKTTSLLSLI 479 (941)
Q Consensus 444 Q~~~M~~v~~al~--~~~~~iiEaPTGTGKTls~L~~a 479 (941)
|.+.+..+.+.+. .+.++++-+|+|||||...-..+
T Consensus 191 r~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la 228 (758)
T 1r6b_X 191 REKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHH
Confidence 4455667777776 45789999999999997654443
No 253
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=39.42 E-value=10 Score=37.59 Aligned_cols=19 Identities=37% Similarity=0.303 Sum_probs=16.0
Q ss_pred HhcCceeeeCCCCCchhHH
Q psy11433 456 DAKGHCLLEMPSGTGKTTS 474 (941)
Q Consensus 456 ~~~~~~iiEaPTGTGKTls 474 (941)
..++.+++.+|+|+|||-.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCCEEEEEcCCCCCHHHH
Confidence 3678999999999999963
No 254
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=39.12 E-value=8.9 Score=38.79 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=12.3
Q ss_pred CCcEEEEecCcccc
Q psy11433 107 RSSVVVFDEAHNID 120 (941)
Q Consensus 107 ~~~ivI~DEAHNL~ 120 (941)
++.+|||||||++.
T Consensus 87 ~~~vliIDEAq~l~ 100 (199)
T 2r2a_A 87 IGSIVIVDEAQDVW 100 (199)
T ss_dssp TTCEEEETTGGGTS
T ss_pred CceEEEEEChhhhc
Confidence 48999999999993
No 255
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=39.02 E-value=21 Score=40.44 Aligned_cols=18 Identities=28% Similarity=0.213 Sum_probs=15.3
Q ss_pred CceeeeCCCCCchhHHHH
Q psy11433 459 GHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~L 476 (941)
.+++|-||+|||||...-
T Consensus 131 ~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CCEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 589999999999997443
No 256
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=38.93 E-value=11 Score=36.55 Aligned_cols=16 Identities=31% Similarity=0.252 Sum_probs=14.2
Q ss_pred cCceeeeCCCCCchhH
Q psy11433 458 KGHCLLEMPSGTGKTT 473 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTl 473 (941)
++++++.+|+|+|||-
T Consensus 5 ~~~i~l~G~~GsGKst 20 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTS 20 (185)
T ss_dssp CCEEEEECSTTSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 5688999999999995
No 257
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=38.47 E-value=20 Score=40.52 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHh
Q psy11433 443 EQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN 484 (941)
Q Consensus 443 ~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~ 484 (941)
.+.+.+..+. ...|+.+++-+|||+|||-. |-+.+.++.
T Consensus 154 ~~~~~L~~l~--~~~ggii~I~GpnGSGKTTl-L~allg~l~ 192 (418)
T 1p9r_A 154 HNHDNFRRLI--KRPHGIILVTGPTGSGKSTT-LYAGLQELN 192 (418)
T ss_dssp HHHHHHHHHH--TSSSEEEEEECSTTSCHHHH-HHHHHHHHC
T ss_pred HHHHHHHHHH--HhcCCeEEEECCCCCCHHHH-HHHHHhhcC
Confidence 4555666652 24677899999999999963 344445543
No 258
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=38.42 E-value=19 Score=43.25 Aligned_cols=58 Identities=16% Similarity=0.251 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccchhHH
Q psy11433 439 YIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEK 505 (941)
Q Consensus 439 ~py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~q~~q 505 (941)
.+++.|.+..+.+.++.. ++.++.|+-|+||| +++-.+++.+.. .+++|..+....+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~--~~~vlta~RGRGKS-a~lG~~~a~~~~------~~~vtAP~~~a~~~ 232 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPP--GVAAVTAARGRGKS-ALAGQLISRIAG------RAIVTAPAKASTDV 232 (671)
T ss_dssp SCCHHHHHHHHHHTTCCS--EEEEEEECTTSSHH-HHHHHHHHHSSS------CEEEECSSCCSCHH
T ss_pred CCCHHHHHHHHHHHHhhh--CeEEEecCCCCCHH-HHHHHHHHHHHh------CcEEECCCHHHHHH
Confidence 578899888877776553 57899999999999 555556665532 35788877766543
No 259
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=38.02 E-value=27 Score=39.63 Aligned_cols=46 Identities=11% Similarity=0.123 Sum_probs=32.7
Q ss_pred HHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccccc
Q psy11433 453 KALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVP 501 (941)
Q Consensus 453 ~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~~ 501 (941)
..+..|...++-||+|+|||.-.+..+...+..++ .+++|.+-..+
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g---~~Vl~~s~E~s 243 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN---ENVAIFSLEMS 243 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS---CCEEEEESSSC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC---CcEEEEECCCC
Confidence 34457889999999999999888887777765432 34555554433
No 260
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=37.67 E-value=22 Score=39.90 Aligned_cols=19 Identities=37% Similarity=0.531 Sum_probs=16.8
Q ss_pred hcCceeeeCCCCCchhHHH
Q psy11433 457 AKGHCLLEMPSGTGKTTSL 475 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~ 475 (941)
...|+++-||||+|||..+
T Consensus 52 ~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH
T ss_pred CcceEEEECCCCCCHHHHH
Confidence 4579999999999999975
No 261
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=37.21 E-value=12 Score=37.84 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=15.5
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.|+.++|-+|+|+|||-
T Consensus 18 ~g~~ivl~GPSGaGKsT 34 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSH 34 (197)
T ss_dssp SCCEEEEECCTTSSHHH
T ss_pred CCCEEEEECcCCCCHHH
Confidence 57899999999999996
No 262
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=36.13 E-value=13 Score=35.28 Aligned_cols=14 Identities=36% Similarity=0.275 Sum_probs=12.6
Q ss_pred ceeeeCCCCCchhH
Q psy11433 460 HCLLEMPSGTGKTT 473 (941)
Q Consensus 460 ~~iiEaPTGTGKTl 473 (941)
.+++.+|.|+|||-
T Consensus 3 ~i~l~G~~GsGKsT 16 (173)
T 3kb2_A 3 LIILEGPDCCFKST 16 (173)
T ss_dssp EEEEECSSSSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999995
No 263
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=36.09 E-value=14 Score=35.82 Aligned_cols=18 Identities=39% Similarity=0.361 Sum_probs=15.5
Q ss_pred hcCceeeeCCCCCchhHH
Q psy11433 457 AKGHCLLEMPSGTGKTTS 474 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls 474 (941)
.+.++++.+|+|+|||..
T Consensus 10 ~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred cCCeEEEEeCCCCCHHHH
Confidence 457899999999999963
No 264
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=35.85 E-value=14 Score=36.87 Aligned_cols=18 Identities=33% Similarity=0.325 Sum_probs=16.0
Q ss_pred HhcCceeeeCCCCCchhH
Q psy11433 456 DAKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 456 ~~~~~~iiEaPTGTGKTl 473 (941)
..|..+++.+|+|+|||-
T Consensus 10 ~~~~~i~l~G~sGsGKsT 27 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGT 27 (204)
T ss_dssp CCCCCEEEECCTTSCHHH
T ss_pred ccCCEEEEECCCCCCHHH
Confidence 367899999999999985
No 265
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=35.50 E-value=11 Score=36.63 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=14.8
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.|..+++.+|.|+|||-
T Consensus 3 ~g~~I~l~G~~GsGKST 19 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGT 19 (186)
T ss_dssp CEEEEEEECCTTSCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 46688999999999995
No 266
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=35.45 E-value=22 Score=40.48 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=31.2
Q ss_pred HHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEec
Q psy11433 454 ALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCS 497 (941)
Q Consensus 454 al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct 497 (941)
.+..|...++-|++|+|||.-.+-.+...+... .+++|.+
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g----~~vl~fS 232 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDND----DVVNLHS 232 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTT----CEEEEEC
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcC----CEEEEEE
Confidence 445788999999999999998888888877652 3555554
No 267
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=35.24 E-value=5.9 Score=45.09 Aligned_cols=39 Identities=23% Similarity=0.099 Sum_probs=24.9
Q ss_pred cCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCcccc
Q psy11433 81 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120 (941)
Q Consensus 81 ~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~ 120 (941)
.++|||+++.-|++..... -...+.+-.+|||||||.+.
T Consensus 210 ~~~Ivv~Tp~~l~~~l~~~-~~~~~~~~~~iViDEah~~~ 248 (479)
T 3fmp_B 210 SEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEADVMI 248 (479)
T ss_dssp CCSEEEECHHHHHHHHTTS-CCCCGGGCCEEEECCHHHHH
T ss_pred CCCEEEECchHHHHHHHhc-CCcCcccCCEEEEECHHHHh
Confidence 4589999988776532111 11222345799999999763
No 268
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=35.24 E-value=14 Score=36.42 Aligned_cols=17 Identities=29% Similarity=0.259 Sum_probs=14.9
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.|..+++++|.|+|||-
T Consensus 3 ~~~~I~l~G~~GsGKsT 19 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTT 19 (204)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCcEEEEEcCCCCCHHH
Confidence 46789999999999995
No 269
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=35.19 E-value=17 Score=37.16 Aligned_cols=17 Identities=29% Similarity=0.264 Sum_probs=14.4
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.|+.++|-+|||+|||-
T Consensus 33 ~g~~ilI~GpsGsGKSt 49 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSE 49 (205)
T ss_dssp TTEEEEEECCCTTTTHH
T ss_pred CCEEEEEECCCCCCHHH
Confidence 45678999999999984
No 270
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=35.15 E-value=16 Score=35.53 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.8
Q ss_pred HhcCceeeeCCCCCchhH
Q psy11433 456 DAKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 456 ~~~~~~iiEaPTGTGKTl 473 (941)
..+..+++++|.|+|||-
T Consensus 7 ~~~~~I~l~G~~GsGKsT 24 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGT 24 (196)
T ss_dssp TTSCEEEEEECTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 466789999999999996
No 271
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=35.02 E-value=9.9 Score=40.07 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=17.2
Q ss_pred HHhcCceeeeCCCCCchhHH
Q psy11433 455 LDAKGHCLLEMPSGTGKTTS 474 (941)
Q Consensus 455 l~~~~~~iiEaPTGTGKTls 474 (941)
+..|+.+++-+|||+|||--
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 45788999999999999953
No 272
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=34.77 E-value=14 Score=42.45 Aligned_cols=42 Identities=12% Similarity=-0.014 Sum_probs=31.3
Q ss_pred HHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEecc
Q psy11433 454 ALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSR 498 (941)
Q Consensus 454 al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~ 498 (941)
.+..|...++-||+|+|||.-.+-.+...+..++ .+++|.+-
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g---~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMG---KKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSC---CCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcC---CcEEEEec
Confidence 4457889999999999999988888887776532 34555543
No 273
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=34.26 E-value=15 Score=36.37 Aligned_cols=24 Identities=25% Similarity=0.098 Sum_probs=19.4
Q ss_pred hcCceeeeCCCCCchhHHHHHHHH
Q psy11433 457 AKGHCLLEMPSGTGKTTSLLSLIV 480 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L~~al 480 (941)
.|...++-+|+|+|||.-.+..+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999976555443
No 274
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=34.11 E-value=17 Score=39.99 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=15.4
Q ss_pred cCceeeeCCCCCchhHHHH
Q psy11433 458 KGHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTls~L 476 (941)
++.++|-+|||+|||--.+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4589999999999996433
No 275
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=34.03 E-value=38 Score=39.15 Aligned_cols=17 Identities=41% Similarity=0.438 Sum_probs=14.1
Q ss_pred ceeeeCCCCCchhHHHH
Q psy11433 460 HCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 460 ~~iiEaPTGTGKTls~L 476 (941)
.++|-+|+|||||+..=
T Consensus 66 GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48999999999997443
No 276
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=33.91 E-value=24 Score=37.23 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=24.7
Q ss_pred HHHhcCceeeeCCCCCchhHHHHHHHHHHHhc
Q psy11433 454 ALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485 (941)
Q Consensus 454 al~~~~~~iiEaPTGTGKTls~L~~al~~~~~ 485 (941)
.+..|...++-+|+|+|||.-+...+......
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 34478999999999999998777666555443
No 277
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=33.70 E-value=19 Score=42.01 Aligned_cols=21 Identities=33% Similarity=0.278 Sum_probs=17.1
Q ss_pred hcCceeeeCCCCCchhHHHHH
Q psy11433 457 AKGHCLLEMPSGTGKTTSLLS 477 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L~ 477 (941)
.|.+++|-+|+|||||...-+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ 127 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKS 127 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 367999999999999975443
No 278
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=33.69 E-value=21 Score=34.07 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=15.9
Q ss_pred hcCceeeeCCCCCchhHH
Q psy11433 457 AKGHCLLEMPSGTGKTTS 474 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls 474 (941)
.|..+++-+|+|+|||--
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678999999999999963
No 279
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=33.54 E-value=18 Score=39.55 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=14.9
Q ss_pred cCceeeeCCCCCchhHHHH
Q psy11433 458 KGHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTls~L 476 (941)
++.+++-+|||+|||--.+
T Consensus 3 ~~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHH
Confidence 3567899999999996433
No 280
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=32.98 E-value=13 Score=36.58 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=14.6
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.+..+++++|.|+|||-
T Consensus 3 ~~~~I~i~G~~GsGKsT 19 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSS 19 (213)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCeEEEEEcCCCCCHHH
Confidence 35678999999999996
No 281
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=32.77 E-value=29 Score=48.83 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHHHHH
Q psy11433 440 IYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLI 479 (941)
Q Consensus 440 py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L~~a 479 (941)
|.|.|..=+-++|+++....-+|+-||||+|||.++=+-+
T Consensus 888 ~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~ 927 (3245)
T 3vkg_A 888 TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYL 927 (3245)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHH
Confidence 4455666666777777777778999999999999865433
No 282
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=32.57 E-value=16 Score=36.34 Aligned_cols=17 Identities=41% Similarity=0.610 Sum_probs=13.9
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.|+...+-+|+|+|||-
T Consensus 3 ~g~~i~lvGpsGaGKST 19 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKST 19 (198)
T ss_dssp --CCEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57889999999999985
No 283
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=32.48 E-value=23 Score=43.70 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhc--CceeeeCCCCCchhHHHHHHH
Q psy11433 443 EQYAYMVELKKALDAK--GHCLLEMPSGTGKTTSLLSLI 479 (941)
Q Consensus 443 ~Q~~~M~~v~~al~~~--~~~iiEaPTGTGKTls~L~~a 479 (941)
+|.+.+..+.+.+..+ .++++-+|+|||||...-..+
T Consensus 174 Gr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la 212 (854)
T 1qvr_A 174 GRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLA 212 (854)
T ss_dssp SCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHH
Confidence 4556777788877754 589999999999997544443
No 284
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=31.88 E-value=17 Score=34.91 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=14.0
Q ss_pred cCceeeeCCCCCchhH
Q psy11433 458 KGHCLLEMPSGTGKTT 473 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTl 473 (941)
+..+++-+|+|+|||-
T Consensus 3 ~~~i~l~G~~GsGKST 18 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSG 18 (178)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 4678999999999995
No 285
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=31.80 E-value=16 Score=35.66 Aligned_cols=14 Identities=29% Similarity=0.330 Sum_probs=12.4
Q ss_pred ceeeeCCCCCchhH
Q psy11433 460 HCLLEMPSGTGKTT 473 (941)
Q Consensus 460 ~~iiEaPTGTGKTl 473 (941)
.+++++|.|+|||-
T Consensus 2 ~I~i~G~~GsGKsT 15 (205)
T 2jaq_A 2 KIAIFGTVGAGKST 15 (205)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCccCHHH
Confidence 47899999999995
No 286
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=31.58 E-value=41 Score=36.85 Aligned_cols=46 Identities=11% Similarity=0.260 Sum_probs=33.0
Q ss_pred HHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEecccc
Q psy11433 451 LKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTV 500 (941)
Q Consensus 451 v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t~ 500 (941)
+...+..|...++-|++|+|||.-.+..+...+... .++.|.+-..
T Consensus 39 ~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g----~~Vl~fSlEm 84 (338)
T 4a1f_A 39 YTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD----RGVAVFSLEM 84 (338)
T ss_dssp HHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT----CEEEEEESSS
T ss_pred HhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC----CeEEEEeCCC
Confidence 333455788999999999999998888887777632 4555555333
No 287
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=31.55 E-value=13 Score=44.73 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=27.2
Q ss_pred hhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 79 IIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 79 ~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
...++|+|+++.-|.. ..+.. ...+.+-.+|||||||.+.+
T Consensus 112 ~~~~~Iiv~Tpe~l~~-~~~~~-~~~l~~~~~vIiDE~H~l~~ 152 (720)
T 2zj8_A 112 LGKYDIIIATAEKFDS-LLRHG-SSWIKDVKILVADEIHLIGS 152 (720)
T ss_dssp GGGCSEEEECHHHHHH-HHHHT-CTTGGGEEEEEEETGGGGGC
T ss_pred cCCCCEEEECHHHHHH-HHHcC-hhhhhcCCEEEEECCcccCC
Confidence 4578999999876643 22221 11133457999999999854
No 288
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=31.47 E-value=12 Score=47.14 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=26.2
Q ss_pred cCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccHH
Q psy11433 81 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNV 122 (941)
Q Consensus 81 ~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d~ 122 (941)
.++|||+++..|.+...+. ...+.+-.+|||||||.+.+.
T Consensus 168 ~~~IvV~Tpe~L~~~L~~~--~~~l~~l~lVViDEaH~l~d~ 207 (1010)
T 2xgj_A 168 DAGCLVMTTEILRSMLYRG--SEVMREVAWVIFDEVHYMRDK 207 (1010)
T ss_dssp TCSEEEEEHHHHHHHHHHT--CTTGGGEEEEEEETGGGGGCT
T ss_pred CCCEEEEcHHHHHHHHHcC--cchhhcCCEEEEechhhhccc
Confidence 5789999987665422221 122334579999999998553
No 289
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=31.28 E-value=19 Score=44.17 Aligned_cols=32 Identities=16% Similarity=0.345 Sum_probs=23.3
Q ss_pred cCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccc
Q psy11433 81 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119 (941)
Q Consensus 81 ~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL 119 (941)
.+||||+++..+.+ ...+.+-.+|||||||.+
T Consensus 471 ~~~IvVgT~~ll~~-------~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 471 QIDVVIGTHALIQE-------DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp CCCEEEECTTHHHH-------CCCCSCCCEEEEESCCCC
T ss_pred CCCEEEECHHHHhh-------hhhccCCceEEecccchh
Confidence 48999999976532 122345579999999986
No 290
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=31.20 E-value=16 Score=37.02 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=14.3
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.+..++|++|+|+|||-
T Consensus 6 ~~~~I~l~G~~GsGKsT 22 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGT 22 (227)
T ss_dssp -CCEEEEEECTTSSHHH
T ss_pred cCcEEEEECCCCCCHHH
Confidence 45689999999999986
No 291
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=31.14 E-value=15 Score=36.99 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=14.4
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.+..++|++|.|+|||-
T Consensus 4 ~~~~I~l~G~~GsGKsT 20 (222)
T 1zak_A 4 DPLKVMISGAPASGKGT 20 (222)
T ss_dssp CSCCEEEEESTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 34678999999999985
No 292
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=31.11 E-value=18 Score=36.17 Aligned_cols=15 Identities=47% Similarity=0.685 Sum_probs=13.3
Q ss_pred CceeeeCCCCCchhH
Q psy11433 459 GHCLLEMPSGTGKTT 473 (941)
Q Consensus 459 ~~~iiEaPTGTGKTl 473 (941)
+++++-||+|+|||-
T Consensus 2 RpIVi~GPSG~GK~T 16 (186)
T 1ex7_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 578999999999985
No 293
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=30.99 E-value=18 Score=36.67 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=15.7
Q ss_pred HHhcCceeeeCCCCCchhH
Q psy11433 455 LDAKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 455 l~~~~~~iiEaPTGTGKTl 473 (941)
+..|+...+-+|+|+|||-
T Consensus 20 i~~G~~~~lvGpsGsGKST 38 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGT 38 (218)
T ss_dssp --CCCCEEEECSTTSSHHH
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 3478999999999999985
No 294
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=30.90 E-value=14 Score=35.91 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=14.1
Q ss_pred cCceeeeCCCCCchhH
Q psy11433 458 KGHCLLEMPSGTGKTT 473 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTl 473 (941)
+..+++++|.|+|||-
T Consensus 5 ~~~I~l~G~~GsGKST 20 (193)
T 2rhm_A 5 PALIIVTGHPATGKTT 20 (193)
T ss_dssp CEEEEEEESTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4578999999999996
No 295
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=30.73 E-value=17 Score=34.76 Aligned_cols=14 Identities=36% Similarity=0.297 Sum_probs=12.6
Q ss_pred ceeeeCCCCCchhH
Q psy11433 460 HCLLEMPSGTGKTT 473 (941)
Q Consensus 460 ~~iiEaPTGTGKTl 473 (941)
.+++.+|+|+|||-
T Consensus 4 ~I~i~G~~GsGKST 17 (181)
T 1ly1_A 4 IILTIGCPGSGKST 17 (181)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEecCCCCCHHH
Confidence 57899999999986
No 296
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=30.72 E-value=19 Score=44.24 Aligned_cols=19 Identities=42% Similarity=0.406 Sum_probs=15.9
Q ss_pred hcCceeeeCCCCCchhHHH
Q psy11433 457 AKGHCLLEMPSGTGKTTSL 475 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~ 475 (941)
.+..++|-+|+|||||...
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4678999999999999643
No 297
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=30.69 E-value=19 Score=38.39 Aligned_cols=32 Identities=19% Similarity=0.065 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHHHhcCceeeeCCCCCchhHHHH
Q psy11433 440 IYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 440 py~~Q~~~M~~v~~al~~~~~~iiEaPTGTGKTls~L 476 (941)
.|+.+.+.+. + +.. ..+++.+|.|+|||.-+-
T Consensus 17 gR~~el~~L~---~-l~~-~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 17 DREKEIEKLK---G-LRA-PITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp CCHHHHHHHH---H-TCS-SEEEEEESTTSSHHHHHH
T ss_pred ChHHHHHHHH---H-hcC-CcEEEECCCCCCHHHHHH
Confidence 3555544443 4 444 699999999999997543
No 298
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=30.53 E-value=13 Score=44.67 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=27.2
Q ss_pred hhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 79 IIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 79 ~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
+..++|+|+++--|.. .++.. ...+.+-.+|||||||.+.+
T Consensus 119 ~~~~~Iiv~Tpe~l~~-~~~~~-~~~l~~~~~vIiDE~H~l~~ 159 (715)
T 2va8_A 119 LKNYDIIITTYEKLDS-LWRHR-PEWLNEVNYFVLDELHYLND 159 (715)
T ss_dssp GGGCSEEEECHHHHHH-HHHHC-CGGGGGEEEEEECSGGGGGC
T ss_pred cCCCCEEEEcHHHHHH-HHhCC-hhHhhccCEEEEechhhcCC
Confidence 4578999999876654 22221 11234458999999999753
No 299
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=30.33 E-value=24 Score=37.22 Aligned_cols=16 Identities=44% Similarity=0.520 Sum_probs=13.6
Q ss_pred ceeeeCCCCCchhHHH
Q psy11433 460 HCLLEMPSGTGKTTSL 475 (941)
Q Consensus 460 ~~iiEaPTGTGKTls~ 475 (941)
.+++-+|+|||||.-+
T Consensus 46 GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLA 61 (274)
T ss_dssp EEEEESSTTSCHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 3899999999999743
No 300
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=29.69 E-value=16 Score=35.24 Aligned_cols=14 Identities=29% Similarity=0.359 Sum_probs=12.5
Q ss_pred ceeeeCCCCCchhH
Q psy11433 460 HCLLEMPSGTGKTT 473 (941)
Q Consensus 460 ~~iiEaPTGTGKTl 473 (941)
.+++++|.|+|||-
T Consensus 3 ~I~i~G~~GsGKsT 16 (194)
T 1nks_A 3 IGIVTGIPGVGKST 16 (194)
T ss_dssp EEEEEECTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999985
No 301
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=29.61 E-value=86 Score=35.32 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=29.9
Q ss_pred ccccCCccccCCCCCCCHH-----HHHHHHHHHHHHH---hcCceeeeCCCCCchhHHH
Q psy11433 425 GLMIDDLPVFFPYEYIYPE-----QYAYMVELKKALD---AKGHCLLEMPSGTGKTTSL 475 (941)
Q Consensus 425 ~~~~~~~~~~FPy~~py~~-----Q~~~M~~v~~al~---~~~~~iiEaPTGTGKTls~ 475 (941)
+...+++.+.||-+.++.. ..+.=-.+++.+- .|+.+.+=+|+|+|||.-+
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 3445555666665543333 1122222333332 6889999999999999755
No 302
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=29.57 E-value=26 Score=35.23 Aligned_cols=25 Identities=24% Similarity=0.053 Sum_probs=20.6
Q ss_pred hcCceeeeCCCCCchhHHHHHHHHH
Q psy11433 457 AKGHCLLEMPSGTGKTTSLLSLIVA 481 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L~~al~ 481 (941)
.|...++-+|+|+|||.-++..+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 6789999999999999876665543
No 303
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=29.56 E-value=17 Score=35.27 Aligned_cols=16 Identities=25% Similarity=0.162 Sum_probs=13.8
Q ss_pred cCceeeeCCCCCchhH
Q psy11433 458 KGHCLLEMPSGTGKTT 473 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTl 473 (941)
+..+++++|+|+|||-
T Consensus 3 ~~~I~l~G~~GsGKsT 18 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGT 18 (196)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 4578999999999985
No 304
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=29.51 E-value=22 Score=36.58 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=14.3
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.+..+++.+|.|+|||-
T Consensus 28 ~~~~I~l~G~~GsGKsT 44 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGT 44 (243)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 34579999999999984
No 305
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=29.44 E-value=18 Score=35.78 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=15.1
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.+..+++++|.|+|||-
T Consensus 9 ~~~~I~l~G~~GsGKST 25 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKST 25 (212)
T ss_dssp CSCEEEEEESTTSSHHH
T ss_pred cCCEEEEEcCCCCCHHH
Confidence 46789999999999996
No 306
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=28.89 E-value=22 Score=34.83 Aligned_cols=16 Identities=44% Similarity=0.644 Sum_probs=13.6
Q ss_pred cCceeeeCCCCCchhH
Q psy11433 458 KGHCLLEMPSGTGKTT 473 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTl 473 (941)
++...+-+|+|+|||-
T Consensus 1 ~~ii~l~GpsGaGKsT 16 (186)
T 3a00_A 1 SRPIVISGPSGTGKST 16 (186)
T ss_dssp CCCEEEESSSSSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 4577899999999995
No 307
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=28.77 E-value=61 Score=35.90 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=26.7
Q ss_pred HHHHHHhcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEeccc
Q psy11433 451 LKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRT 499 (941)
Q Consensus 451 v~~al~~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct~t 499 (941)
+........++++.+++|||||+. .-++.............+-|+..
T Consensus 153 i~~~a~~~~~vli~Ge~GtGK~~l--Ar~ih~~s~r~~~~fv~v~~~~~ 199 (387)
T 1ny5_A 153 IKKISCAECPVLITGESGVGKEVV--ARLIHKLSDRSKEPFVALNVASI 199 (387)
T ss_dssp HHHHTTCCSCEEEECSTTSSHHHH--HHHHHHHSTTTTSCEEEEETTTS
T ss_pred HHHhcCCCCCeEEecCCCcCHHHH--HHHHHHhcCCCCCCeEEEecCCC
Confidence 333333567899999999999963 33333332221122445566643
No 308
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=28.70 E-value=20 Score=35.95 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=14.1
Q ss_pred cCceeeeCCCCCchhH
Q psy11433 458 KGHCLLEMPSGTGKTT 473 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTl 473 (941)
+..+++++|.|+|||-
T Consensus 4 ~~~I~l~G~~GsGKsT 19 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGT 19 (220)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 4678999999999985
No 309
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=28.63 E-value=14 Score=44.39 Aligned_cols=41 Identities=24% Similarity=0.235 Sum_probs=27.2
Q ss_pred hhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 79 IIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 79 ~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
...++|+|+++--|.. ..+.. ...+.+-.+|||||||.+.+
T Consensus 112 ~~~~~Iiv~Tpe~l~~-~l~~~-~~~l~~~~~vIiDE~H~l~~ 152 (702)
T 2p6r_A 112 LGDCDIIVTTSEKADS-LIRNR-ASWIKAVSCLVVDEIHLLDS 152 (702)
T ss_dssp STTCSEEEEEHHHHHH-HHHTT-CSGGGGCCEEEETTGGGGGC
T ss_pred ccCCCEEEECHHHHHH-HHHcC-hhHHhhcCEEEEeeeeecCC
Confidence 3478999999876643 22221 11234567999999999865
No 310
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=28.49 E-value=17 Score=45.97 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=26.2
Q ss_pred hcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCcccc
Q psy11433 80 IHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120 (941)
Q Consensus 80 ~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~ 120 (941)
..++|||++++-|.+..-.......+....+||+||||...
T Consensus 374 ~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~ 414 (1038)
T 2w00_A 374 DDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQ 414 (1038)
T ss_dssp SSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTH
T ss_pred CCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhc
Confidence 36899999999876421111000123356899999999963
No 311
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=28.38 E-value=21 Score=36.09 Aligned_cols=24 Identities=38% Similarity=0.362 Sum_probs=19.7
Q ss_pred HhcCceeeeCCCCCchhHHHHHHH
Q psy11433 456 DAKGHCLLEMPSGTGKTTSLLSLI 479 (941)
Q Consensus 456 ~~~~~~iiEaPTGTGKTls~L~~a 479 (941)
..|....+-+|+|+|||.-+.+.+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 378999999999999997665544
No 312
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=28.14 E-value=25 Score=38.29 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=14.3
Q ss_pred CceeeeCCCCCchhHHHH
Q psy11433 459 GHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~L 476 (941)
..+++-+|||+|||--.+
T Consensus 11 ~~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCccCHHHHHH
Confidence 467899999999996433
No 313
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=27.92 E-value=20 Score=35.49 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=15.2
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.+..+++++|.|+|||-
T Consensus 8 ~~~~I~l~G~~GsGKsT 24 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKST 24 (215)
T ss_dssp CCCEEEEEESTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 56789999999999995
No 314
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=27.89 E-value=23 Score=33.79 Aligned_cols=16 Identities=44% Similarity=0.628 Sum_probs=14.2
Q ss_pred cCceeeeCCCCCchhH
Q psy11433 458 KGHCLLEMPSGTGKTT 473 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTl 473 (941)
+..+++-+|.|+|||-
T Consensus 4 ~~~i~l~G~~GsGKST 19 (173)
T 1kag_A 4 KRNIFLVGPMGAGKST 19 (173)
T ss_dssp CCCEEEECCTTSCHHH
T ss_pred CCeEEEECCCCCCHHH
Confidence 5678999999999985
No 315
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=27.86 E-value=45 Score=33.68 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=20.0
Q ss_pred HHHHHHhcCceeeeCCCCCchhHHH
Q psy11433 451 LKKALDAKGHCLLEMPSGTGKTTSL 475 (941)
Q Consensus 451 v~~al~~~~~~iiEaPTGTGKTls~ 475 (941)
+.+.+..|....+-+|.|+|||.-+
T Consensus 15 ~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred HHHhccCCCEEEEECCCCCCHHHHH
Confidence 3444688999999999999999643
No 316
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=27.62 E-value=56 Score=35.96 Aligned_cols=29 Identities=28% Similarity=0.226 Sum_probs=24.3
Q ss_pred hcCceeeeCCCCCchhHHHHHHHHHHHhc
Q psy11433 457 AKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L~~al~~~~~ 485 (941)
.|...++.+|+|+|||.-.+..+...+..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~ 90 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE 90 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999888777766654
No 317
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=27.57 E-value=24 Score=41.71 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=27.5
Q ss_pred hcCcEEEEccccccCh-hhhhHhh--hhcCCCcEEEEecCccccH
Q psy11433 80 IHAKIVVYSYHYLLDP-KIANVVS--KELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 80 ~~AdIVv~~y~yLl~~-~~r~~~~--~~l~~~~ivI~DEAHNL~d 121 (941)
..++||+++..-|..+ ...+.+. ..+..-++|||||||.+.+
T Consensus 135 ~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~ 179 (591)
T 2v1x_A 135 SELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQ 179 (591)
T ss_dssp CCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGST
T ss_pred CCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccc
Confidence 4789999999877543 2222221 1233457999999998854
No 318
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=27.43 E-value=22 Score=35.04 Aligned_cols=16 Identities=44% Similarity=0.538 Sum_probs=14.0
Q ss_pred cCceeeeCCCCCchhH
Q psy11433 458 KGHCLLEMPSGTGKTT 473 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTl 473 (941)
+..+++++|.|+|||-
T Consensus 20 ~~~I~l~G~~GsGKST 35 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGT 35 (201)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 3578999999999996
No 319
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=27.38 E-value=22 Score=36.18 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=14.4
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.+..++|++|+|+|||-
T Consensus 15 ~~~~I~l~G~~GsGKsT 31 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGT 31 (233)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 34679999999999985
No 320
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=27.13 E-value=21 Score=36.56 Aligned_cols=17 Identities=41% Similarity=0.307 Sum_probs=15.4
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.|..+++|+|.|+|||-
T Consensus 4 ~g~~i~~eG~~g~GKst 20 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTT 20 (216)
T ss_dssp CCCEEEEEECSSSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 57899999999999985
No 321
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=27.08 E-value=19 Score=36.90 Aligned_cols=17 Identities=41% Similarity=0.593 Sum_probs=15.3
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.|..++||+|.|+|||-
T Consensus 25 ~g~~i~i~G~~GsGKsT 41 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTT 41 (229)
T ss_dssp CCEEEEEECCTTSCHHH
T ss_pred CCeEEEEEcCCCCCHHH
Confidence 57789999999999985
No 322
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=27.02 E-value=14 Score=36.01 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=15.8
Q ss_pred HhcCceeeeCCCCCchhH
Q psy11433 456 DAKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 456 ~~~~~~iiEaPTGTGKTl 473 (941)
..|..+++-+|+|+|||-
T Consensus 7 ~~g~~i~l~G~~GsGKST 24 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKST 24 (191)
T ss_dssp CTTEEEEEEECTTSCHHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 367889999999999995
No 323
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=26.95 E-value=24 Score=39.31 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=16.9
Q ss_pred HHHhcCceeeeCCCCCchhH
Q psy11433 454 ALDAKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 454 al~~~~~~iiEaPTGTGKTl 473 (941)
.+..|..+++.+|+|+|||.
T Consensus 165 ~i~~~~~i~l~G~~GsGKST 184 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTT 184 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHH
T ss_pred ccCCCCEEEEECCCCCCHHH
Confidence 34477899999999999985
No 324
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=26.78 E-value=24 Score=43.43 Aligned_cols=17 Identities=47% Similarity=0.460 Sum_probs=14.7
Q ss_pred CceeeeCCCCCchhHHH
Q psy11433 459 GHCLLEMPSGTGKTTSL 475 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~ 475 (941)
+.+|+.+|+|||||+..
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999743
No 325
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=26.74 E-value=20 Score=36.97 Aligned_cols=17 Identities=35% Similarity=0.329 Sum_probs=12.5
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.|..++||+|.|+|||-
T Consensus 24 ~g~~I~~eG~~GsGKsT 40 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTT 40 (227)
T ss_dssp CCCEEEEECCC---CHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 67899999999999985
No 326
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=26.70 E-value=20 Score=36.50 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=19.5
Q ss_pred hcCceeeeCCCCCchhHHHHHHHHHHHhc
Q psy11433 457 AKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L~~al~~~~~ 485 (941)
.|..++||+|.|+|||-.. -.+..++..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~-~~l~~~l~~ 32 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNR-DYLAERLRE 32 (213)
T ss_dssp CCEEEEEECSTTSSHHHHH-HHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHH-HHHHHHHHH
Confidence 5778999999999998532 223345544
No 327
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=26.66 E-value=22 Score=34.54 Aligned_cols=14 Identities=36% Similarity=0.463 Sum_probs=12.3
Q ss_pred ceeeeCCCCCchhH
Q psy11433 460 HCLLEMPSGTGKTT 473 (941)
Q Consensus 460 ~~iiEaPTGTGKTl 473 (941)
.+++++|.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (197)
T 2z0h_A 2 FITFEGIDGSGKST 15 (197)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46899999999985
No 328
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=26.63 E-value=24 Score=35.24 Aligned_cols=19 Identities=26% Similarity=0.104 Sum_probs=16.1
Q ss_pred HHhcCceeeeCCCCCchhH
Q psy11433 455 LDAKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 455 l~~~~~~iiEaPTGTGKTl 473 (941)
+..|..+++++|.|+|||-
T Consensus 22 ~~~~~~i~~~G~~GsGKsT 40 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKST 40 (211)
T ss_dssp TSSCEEEEEECSTTSSHHH
T ss_pred CCCCCEEEEECCCCCCHHH
Confidence 4467789999999999985
No 329
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=26.43 E-value=21 Score=36.16 Aligned_cols=18 Identities=44% Similarity=0.488 Sum_probs=11.9
Q ss_pred hcCceeeeCCCCCchhHH
Q psy11433 457 AKGHCLLEMPSGTGKTTS 474 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls 474 (941)
.|..+.+-+|+|+|||-.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCCEEEEECSCC----CH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999953
No 330
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=26.28 E-value=22 Score=36.26 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=20.1
Q ss_pred hcCceeeeCCCCCchhHHHHHHHHHHHhcC
Q psy11433 457 AKGHCLLEMPSGTGKTTSLLSLIVAYMNAH 486 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L~~al~~~~~~ 486 (941)
.|..++||+|.|+|||-.. -.+..|+...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~-~~l~~~l~~~ 30 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTAR-NVVVETLEQL 30 (213)
T ss_dssp CCCEEEEEECTTSCHHHHH-HHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHHc
Confidence 4778999999999999532 2333555543
No 331
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=26.19 E-value=57 Score=35.73 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=24.2
Q ss_pred hcCceeeeCCCCCchhHHHHHHHHHHHhc
Q psy11433 457 AKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L~~al~~~~~ 485 (941)
.|...++-+|+|+|||.-.+..+...+..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~ 88 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA 88 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 67899999999999998877777666654
No 332
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=26.08 E-value=20 Score=37.30 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=12.3
Q ss_pred ceeeeCCCCCchhH
Q psy11433 460 HCLLEMPSGTGKTT 473 (941)
Q Consensus 460 ~~iiEaPTGTGKTl 473 (941)
.+++-+|||+|||-
T Consensus 3 li~I~G~~GSGKST 16 (253)
T 2ze6_A 3 LHLIYGPTCSGKTD 16 (253)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCcCHHH
Confidence 56889999999986
No 333
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=25.87 E-value=21 Score=34.71 Aligned_cols=17 Identities=35% Similarity=0.251 Sum_probs=14.9
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.|..++++++.|+|||-
T Consensus 12 ~~~~i~l~G~~GsGKsT 28 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTT 28 (186)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEEcCCCCCHHH
Confidence 46789999999999996
No 334
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=25.82 E-value=25 Score=34.82 Aligned_cols=17 Identities=41% Similarity=0.526 Sum_probs=15.3
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.|..+++-+|.|+|||-
T Consensus 28 ~g~~i~l~G~~GsGKST 44 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTT 44 (200)
T ss_dssp CCCEEEEECCTTSCHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 57899999999999995
No 335
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=25.54 E-value=37 Score=33.60 Aligned_cols=28 Identities=29% Similarity=0.069 Sum_probs=20.4
Q ss_pred HHHHHHHHHHh-----cCceeeeCCCCCchhHH
Q psy11433 447 YMVELKKALDA-----KGHCLLEMPSGTGKTTS 474 (941)
Q Consensus 447 ~M~~v~~al~~-----~~~~iiEaPTGTGKTls 474 (941)
.|+.+.+.+.. +..+.+-+|+|+|||-.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTL 38 (201)
T ss_dssp HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEECCCCCCHHHH
Confidence 45566665553 45788999999999853
No 336
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=25.52 E-value=38 Score=35.41 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=21.5
Q ss_pred hcCceeeeCCCCCchhHHHHHHHHHH
Q psy11433 457 AKGHCLLEMPSGTGKTTSLLSLIVAY 482 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L~~al~~ 482 (941)
.|...++-+|+|+|||.-++..+...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 78899999999999998777666543
No 337
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=25.48 E-value=15 Score=46.98 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=24.8
Q ss_pred cCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccHH
Q psy11433 81 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNV 122 (941)
Q Consensus 81 ~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d~ 122 (941)
.++|||++..-|.+...+... .+.+-.+|||||||.+.+.
T Consensus 266 ~~~IlV~Tpe~L~~~L~~~~~--~l~~l~lVVIDEaH~l~d~ 305 (1108)
T 3l9o_A 266 DAGCLVMTTEILRSMLYRGSE--VMREVAWVIFDEVHYMRDK 305 (1108)
T ss_dssp SCSEEEEEHHHHHHHHHHCSS--HHHHEEEEEEETGGGTTSH
T ss_pred CCCEEEeChHHHHHHHHcCcc--ccccCCEEEEhhhhhcccc
Confidence 477888887655543222211 1223479999999998654
No 338
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=25.45 E-value=41 Score=36.22 Aligned_cols=27 Identities=22% Similarity=0.091 Sum_probs=22.2
Q ss_pred hcCceeeeCCCCCchhHHHHHHHHHHH
Q psy11433 457 AKGHCLLEMPSGTGKTTSLLSLIVAYM 483 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L~~al~~~ 483 (941)
.|...++-+|+|+|||.-.+..+...+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 678999999999999987777666544
No 339
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=25.36 E-value=19 Score=45.45 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=27.3
Q ss_pred hcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccHH
Q psy11433 80 IHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNV 122 (941)
Q Consensus 80 ~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d~ 122 (941)
..++|+|++..-|++...+. ...+.+-.+|||||||.+.+.
T Consensus 122 ~~~~IlV~Tpe~L~~~l~~~--~~~l~~l~lvViDEaH~l~d~ 162 (997)
T 4a4z_A 122 PDANCLIMTTEILRSMLYRG--ADLIRDVEFVIFDEVHYVNDQ 162 (997)
T ss_dssp TTSSEEEEEHHHHHHHHHHT--CSGGGGEEEEEECCTTCCCTT
T ss_pred CCCCEEEECHHHHHHHHHhC--chhhcCCCEEEEECccccccc
Confidence 45799999988775533222 112334679999999988653
No 340
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=25.32 E-value=25 Score=35.91 Aligned_cols=19 Identities=26% Similarity=0.555 Sum_probs=16.0
Q ss_pred HHhcCceeeeCCCCCchhH
Q psy11433 455 LDAKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 455 l~~~~~~iiEaPTGTGKTl 473 (941)
+..|...++-+|+|+|||-
T Consensus 13 ~~~G~ii~l~GpsGsGKST 31 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSS 31 (219)
T ss_dssp --CCCEEEEECCTTSCHHH
T ss_pred CCCCcEEEEECCCCCCHHH
Confidence 4578999999999999996
No 341
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=25.23 E-value=26 Score=34.18 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=15.0
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.+.++++-+|+|+|||-
T Consensus 9 ~~~~I~l~G~~GsGKST 25 (184)
T 1y63_A 9 KGINILITGTPGTGKTS 25 (184)
T ss_dssp SSCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46789999999999996
No 342
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=24.96 E-value=30 Score=44.17 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=26.9
Q ss_pred cCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 81 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 81 ~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
.++|||++...|++.... ..+.+-.+|||||||.+.+
T Consensus 174 ~~~IlV~Tp~rL~~~l~~----l~~~~l~~lViDEaH~l~~ 210 (1104)
T 4ddu_A 174 DYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLK 210 (1104)
T ss_dssp CCSEEEEEHHHHHHSHHH----HHTSCCSEEEESCHHHHTT
T ss_pred CCCEEEECHHHHHHHHHh----hcccCcCEEEEeCCCcccc
Confidence 389999998887653221 2234568999999999864
No 343
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=24.90 E-value=27 Score=33.14 Aligned_cols=15 Identities=27% Similarity=0.286 Sum_probs=13.2
Q ss_pred CceeeeCCCCCchhH
Q psy11433 459 GHCLLEMPSGTGKTT 473 (941)
Q Consensus 459 ~~~iiEaPTGTGKTl 473 (941)
..+++.+|.|+|||-
T Consensus 3 ~~I~l~G~~GsGKsT 17 (173)
T 1e6c_A 3 EPIFMVGARGCGMTT 17 (173)
T ss_dssp CCEEEESCTTSSHHH
T ss_pred ceEEEECCCCCCHHH
Confidence 468899999999995
No 344
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=24.82 E-value=26 Score=33.84 Aligned_cols=14 Identities=43% Similarity=0.446 Sum_probs=12.3
Q ss_pred ceeeeCCCCCchhH
Q psy11433 460 HCLLEMPSGTGKTT 473 (941)
Q Consensus 460 ~~iiEaPTGTGKTl 473 (941)
.+++++|.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (195)
T 2pbr_A 2 LIAFEGIDGSGKTT 15 (195)
T ss_dssp EEEEECSTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999995
No 345
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=24.81 E-value=31 Score=38.08 Aligned_cols=27 Identities=33% Similarity=0.716 Sum_probs=19.2
Q ss_pred HhcCceeeeCCCCCchhHHHHHHHHHHH
Q psy11433 456 DAKGHCLLEMPSGTGKTTSLLSLIVAYM 483 (941)
Q Consensus 456 ~~~~~~iiEaPTGTGKTls~L~~al~~~ 483 (941)
..++.+++-+|||+|||-. |-..+.++
T Consensus 121 ~~~g~i~I~GptGSGKTTl-L~~l~g~~ 147 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTT-LAAMLDYL 147 (356)
T ss_dssp CSSEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHH-HHHHHhcc
Confidence 4667999999999999953 33334444
No 346
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=24.79 E-value=58 Score=36.02 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=24.3
Q ss_pred CHHHHHHHHH-----HHHHHHhcCc--eeeeCCCCCchhHHH
Q psy11433 441 YPEQYAYMVE-----LKKALDAKGH--CLLEMPSGTGKTTSL 475 (941)
Q Consensus 441 y~~Q~~~M~~-----v~~al~~~~~--~iiEaPTGTGKTls~ 475 (941)
...|.+..+. |.+++++|.+ ++.=+.||+|||-..
T Consensus 61 ~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 61 TVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp TCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred CCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEE
Confidence 3457776665 3345556765 588999999999754
No 347
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=24.75 E-value=23 Score=34.21 Aligned_cols=17 Identities=41% Similarity=0.347 Sum_probs=14.7
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.|..+++.+|.|+|||-
T Consensus 4 ~g~~i~l~G~~GsGKST 20 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTT 20 (179)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 46788999999999985
No 348
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=24.73 E-value=1.1e+02 Score=34.92 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=19.1
Q ss_pred CceeeeCCCCCchhHHHHHHHHHHH
Q psy11433 459 GHCLLEMPSGTGKTTSLLSLIVAYM 483 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~L~~al~~~ 483 (941)
.++++-+|+|+|||-....-+..+.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHH
Confidence 5789999999999987665554443
No 349
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=24.70 E-value=22 Score=34.15 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=10.2
Q ss_pred cCceeeeCCCCCchhH
Q psy11433 458 KGHCLLEMPSGTGKTT 473 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTl 473 (941)
+..++++++.|+|||-
T Consensus 5 ~~~I~l~G~~GsGKST 20 (183)
T 2vli_A 5 SPIIWINGPFGVGKTH 20 (183)
T ss_dssp CCEEEEECCC----CH
T ss_pred CeEEEEECCCCCCHHH
Confidence 5678999999999996
No 350
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=24.65 E-value=15 Score=36.52 Aligned_cols=14 Identities=36% Similarity=0.399 Sum_probs=12.3
Q ss_pred ceeeeCCCCCchhH
Q psy11433 460 HCLLEMPSGTGKTT 473 (941)
Q Consensus 460 ~~iiEaPTGTGKTl 473 (941)
.++|++|.|+|||-
T Consensus 2 ~I~i~G~~GsGKsT 15 (214)
T 1gtv_A 2 LIAIEGVDGAGKRT 15 (214)
T ss_dssp EEEEEEEEEEEHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 57899999999985
No 351
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=24.59 E-value=29 Score=37.54 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCceeeeCCCCCchhH
Q psy11433 447 YMVELKKALDAKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 447 ~M~~v~~al~~~~~~iiEaPTGTGKTl 473 (941)
..+.+--.+..|....|-+|+|+|||.
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKST 141 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSM 141 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHH
Confidence 344555555688999999999999985
No 352
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=24.57 E-value=23 Score=36.05 Aligned_cols=17 Identities=41% Similarity=0.409 Sum_probs=15.2
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.|..+.|++|.|+|||-
T Consensus 19 ~g~~i~i~G~~GsGKST 35 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTT 35 (230)
T ss_dssp CCEEEEEECSTTSCHHH
T ss_pred CceEEEEECCCCCCHHH
Confidence 56789999999999995
No 353
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=24.37 E-value=25 Score=35.34 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=13.8
Q ss_pred cCceeeeCCCCCchhH
Q psy11433 458 KGHCLLEMPSGTGKTT 473 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTl 473 (941)
+..++|++|.|+|||-
T Consensus 5 ~~~I~l~G~~GsGKsT 20 (217)
T 3be4_A 5 KHNLILIGAPGSGKGT 20 (217)
T ss_dssp CCEEEEEECTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 4578999999999985
No 354
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=24.17 E-value=62 Score=34.54 Aligned_cols=27 Identities=33% Similarity=0.329 Sum_probs=20.3
Q ss_pred hcCceeeeCCCCCchhHHHHHHHHHHH
Q psy11433 457 AKGHCLLEMPSGTGKTTSLLSLIVAYM 483 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L~~al~~~ 483 (941)
.++.+++-+|+|+|||-.....+..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467888889999999976665554444
No 355
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=24.10 E-value=28 Score=34.31 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=13.6
Q ss_pred CceeeeCCCCCchhH
Q psy11433 459 GHCLLEMPSGTGKTT 473 (941)
Q Consensus 459 ~~~iiEaPTGTGKTl 473 (941)
..+++.+|.|+|||-
T Consensus 19 ~~I~l~G~~GsGKST 33 (202)
T 3t61_A 19 GSIVVMGVSGSGKSS 33 (202)
T ss_dssp SCEEEECSTTSCHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 579999999999995
No 356
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=23.88 E-value=22 Score=34.24 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=13.2
Q ss_pred CceeeeCCCCCchhH
Q psy11433 459 GHCLLEMPSGTGKTT 473 (941)
Q Consensus 459 ~~~iiEaPTGTGKTl 473 (941)
..+++++|+|+|||-
T Consensus 7 ~~I~l~G~~GsGKsT 21 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGT 21 (194)
T ss_dssp EEEEEEESTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 368899999999996
No 357
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=23.80 E-value=33 Score=43.98 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=23.1
Q ss_pred cCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccc
Q psy11433 81 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119 (941)
Q Consensus 81 ~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL 119 (941)
.+||||++|..|-. ...+.+-.+|||||||.+
T Consensus 706 ~~dIvV~T~~ll~~-------~~~~~~l~lvIiDEaH~~ 737 (1151)
T 2eyq_A 706 KIDILIGTHKLLQS-------DVKFKDLGLLIVDEEHRF 737 (1151)
T ss_dssp CCSEEEECTHHHHS-------CCCCSSEEEEEEESGGGS
T ss_pred CCCEEEECHHHHhC-------CccccccceEEEechHhc
Confidence 58999999976532 112334579999999995
No 358
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=23.68 E-value=68 Score=35.46 Aligned_cols=29 Identities=24% Similarity=0.208 Sum_probs=23.7
Q ss_pred hcCceeeeCCCCCchhHHHHHHHHHHHhc
Q psy11433 457 AKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L~~al~~~~~ 485 (941)
.|...++-+|+|+|||.-.+..+...+..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~ 101 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA 101 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC
Confidence 67889999999999998777777666654
No 359
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=23.62 E-value=26 Score=36.32 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=15.5
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.|..++||+|.|+|||-
T Consensus 26 ~~~~i~~eG~~GsGKsT 42 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKST 42 (236)
T ss_dssp CCCEEEEEESTTSCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 57899999999999996
No 360
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=23.61 E-value=24 Score=36.76 Aligned_cols=16 Identities=31% Similarity=0.275 Sum_probs=14.0
Q ss_pred cCceeeeCCCCCchhH
Q psy11433 458 KGHCLLEMPSGTGKTT 473 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTl 473 (941)
+..++++||+|+|||-
T Consensus 4 ~~lIvl~G~pGSGKST 19 (260)
T 3a4m_A 4 IMLIILTGLPGVGKST 19 (260)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred CEEEEEEcCCCCCHHH
Confidence 4578999999999996
No 361
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=23.51 E-value=65 Score=35.47 Aligned_cols=37 Identities=11% Similarity=0.222 Sum_probs=24.5
Q ss_pred hcCceeeeCCCCCchhHHHHHHHHHHHhcCCCCCceEEEec
Q psy11433 457 AKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCS 497 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L~~al~~~~~~~~~~~ki~~ct 497 (941)
.+.|.++-+|||+|||..+-.-+.... ..+ .++++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~~~---~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-MQG---SRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-TTT---CCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-HCC---CEEEEEe
Confidence 468999999999999976555444333 322 4555554
No 362
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=23.38 E-value=27 Score=34.29 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=13.3
Q ss_pred CceeeeCCCCCchhH
Q psy11433 459 GHCLLEMPSGTGKTT 473 (941)
Q Consensus 459 ~~~iiEaPTGTGKTl 473 (941)
..+++++|.|+|||-
T Consensus 16 ~~I~l~G~~GsGKsT 30 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGT 30 (203)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 478999999999995
No 363
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=23.16 E-value=39 Score=36.99 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=18.8
Q ss_pred hcCceeeeCCCCCchhHHHHHHHHH
Q psy11433 457 AKGHCLLEMPSGTGKTTSLLSLIVA 481 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L~~al~ 481 (941)
.|...++.+|+|+|||.-.+..+..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5667899999999999755554433
No 364
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=23.12 E-value=29 Score=34.51 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=15.9
Q ss_pred HHHhcCceeeeCCCCCchhH
Q psy11433 454 ALDAKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 454 al~~~~~~iiEaPTGTGKTl 473 (941)
.+..|....+=+|+|+|||-
T Consensus 16 ~i~~Gei~~l~GpnGsGKST 35 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKST 35 (207)
T ss_dssp ---CCCEEEEECSTTSSHHH
T ss_pred CCCCCCEEEEECCCCCCHHH
Confidence 45689999999999999995
No 365
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=23.09 E-value=26 Score=33.56 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=14.7
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.|..+++.+|.|+|||.
T Consensus 7 ~g~~i~l~G~~GsGKST 23 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSA 23 (175)
T ss_dssp TSEEEEEECSTTSCHHH
T ss_pred CCcEEEEEcCCCCCHHH
Confidence 46688999999999985
No 366
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=22.89 E-value=81 Score=34.76 Aligned_cols=29 Identities=21% Similarity=0.056 Sum_probs=23.7
Q ss_pred hcCceeeeCCCCCchhHHHHHHHHHHHhc
Q psy11433 457 AKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L~~al~~~~~ 485 (941)
.|...++-+|+|+|||.-.+..+......
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~ 88 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKM 88 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 67799999999999998777777666554
No 367
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=22.88 E-value=28 Score=34.56 Aligned_cols=14 Identities=36% Similarity=0.404 Sum_probs=12.1
Q ss_pred ceeeeCCCCCchhH
Q psy11433 460 HCLLEMPSGTGKTT 473 (941)
Q Consensus 460 ~~iiEaPTGTGKTl 473 (941)
.+++.+|.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (216)
T 3fb4_A 2 NIVLMGLPGAGKGT 15 (216)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46889999999985
No 368
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=22.75 E-value=38 Score=38.18 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=14.1
Q ss_pred CceeeeCCCCCchhHHHH
Q psy11433 459 GHCLLEMPSGTGKTTSLL 476 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~L 476 (941)
+.++|-+|||+|||--.+
T Consensus 3 ~~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEEECSSSSHHHHHH
T ss_pred cEEEEECcchhhHHHHHH
Confidence 357899999999995433
No 369
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=22.63 E-value=29 Score=34.55 Aligned_cols=14 Identities=36% Similarity=0.394 Sum_probs=12.1
Q ss_pred ceeeeCCCCCchhH
Q psy11433 460 HCLLEMPSGTGKTT 473 (941)
Q Consensus 460 ~~iiEaPTGTGKTl 473 (941)
.+++.+|.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (216)
T 3dl0_A 2 NLVLMGLPGAGKGT 15 (216)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46889999999985
No 370
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=22.60 E-value=24 Score=35.09 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=19.0
Q ss_pred HhcCceeeeCCCCCchhHHHHHHH
Q psy11433 456 DAKGHCLLEMPSGTGKTTSLLSLI 479 (941)
Q Consensus 456 ~~~~~~iiEaPTGTGKTls~L~~a 479 (941)
..|....+-+|+|+|||.-+.+.+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 367899999999999997555443
No 371
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=22.50 E-value=30 Score=38.34 Aligned_cols=19 Identities=37% Similarity=0.635 Sum_probs=16.3
Q ss_pred HhcCceeeeCCCCCchhHH
Q psy11433 456 DAKGHCLLEMPSGTGKTTS 474 (941)
Q Consensus 456 ~~~~~~iiEaPTGTGKTls 474 (941)
..|+.+++-+|||+|||-.
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4678999999999999953
No 372
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=22.28 E-value=33 Score=42.19 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=15.7
Q ss_pred hcCceeeeCCCCCchhHH
Q psy11433 457 AKGHCLLEMPSGTGKTTS 474 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls 474 (941)
.+++++|.+|+|||||..
T Consensus 510 ~~~~vLL~GppGtGKT~L 527 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCCCBCCTTSSHHHH
T ss_pred CCceeEEECCCCCCHHHH
Confidence 467899999999999983
No 373
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=22.28 E-value=37 Score=41.68 Aligned_cols=15 Identities=40% Similarity=0.499 Sum_probs=13.5
Q ss_pred CceeeeCCCCCchhH
Q psy11433 459 GHCLLEMPSGTGKTT 473 (941)
Q Consensus 459 ~~~iiEaPTGTGKTl 473 (941)
+.+++-+|+|||||+
T Consensus 512 ~gvLl~GPPGtGKT~ 526 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTL 526 (806)
T ss_dssp SCCEEESSTTSSHHH
T ss_pred ceEEEecCCCCCchH
Confidence 568999999999995
No 374
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=22.26 E-value=32 Score=32.72 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=13.6
Q ss_pred CceeeeCCCCCchhH
Q psy11433 459 GHCLLEMPSGTGKTT 473 (941)
Q Consensus 459 ~~~iiEaPTGTGKTl 473 (941)
.++++.++.|+|||-
T Consensus 8 ~~i~l~G~~GsGKST 22 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSS 22 (168)
T ss_dssp CEEEEESCTTSSHHH
T ss_pred ceEEEECCCCCCHHH
Confidence 588999999999995
No 375
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=22.23 E-value=27 Score=36.22 Aligned_cols=17 Identities=24% Similarity=0.173 Sum_probs=14.8
Q ss_pred hcCceeeeCCCCCchhH
Q psy11433 457 AKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTl 473 (941)
.+..++||++.|+|||-
T Consensus 23 ~~~~I~ieG~~GsGKST 39 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKST 39 (263)
T ss_dssp CCEEEEEECSTTSSHHH
T ss_pred CceEEEEECCCCCCHHH
Confidence 45688999999999995
No 376
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=22.22 E-value=31 Score=34.88 Aligned_cols=14 Identities=43% Similarity=0.650 Sum_probs=12.3
Q ss_pred ceeeeCCCCCchhH
Q psy11433 460 HCLLEMPSGTGKTT 473 (941)
Q Consensus 460 ~~iiEaPTGTGKTl 473 (941)
.++|++|.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (223)
T 2xb4_A 2 NILIFGPNGSGKGT 15 (223)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999985
No 377
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=22.13 E-value=32 Score=32.52 Aligned_cols=14 Identities=29% Similarity=0.131 Sum_probs=12.3
Q ss_pred ceeeeCCCCCchhH
Q psy11433 460 HCLLEMPSGTGKTT 473 (941)
Q Consensus 460 ~~iiEaPTGTGKTl 473 (941)
.++++++.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (168)
T 2pt5_A 2 RIYLIGFMCSGKST 15 (168)
T ss_dssp EEEEESCTTSCHHH
T ss_pred eEEEECCCCCCHHH
Confidence 47899999999995
No 378
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=22.07 E-value=96 Score=32.02 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=21.4
Q ss_pred ceeeeCCCCCchhHHHHHHHHHHHhc
Q psy11433 460 HCLLEMPSGTGKTTSLLSLIVAYMNA 485 (941)
Q Consensus 460 ~~iiEaPTGTGKTls~L~~al~~~~~ 485 (941)
.+++-+|.|+|||-..+.-+......
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 58899999999999888777766654
No 379
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=21.96 E-value=41 Score=35.66 Aligned_cols=16 Identities=38% Similarity=0.470 Sum_probs=13.7
Q ss_pred cCceeeeCCCCCchhH
Q psy11433 458 KGHCLLEMPSGTGKTT 473 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTl 473 (941)
+..+++-||+|+|||-
T Consensus 33 ~~livl~G~sGsGKST 48 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTS 48 (287)
T ss_dssp CEEEEEECCTTSCTHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 3478999999999985
No 380
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=21.65 E-value=39 Score=36.87 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.0
Q ss_pred CceeeeCCCCCchhHHH
Q psy11433 459 GHCLLEMPSGTGKTTSL 475 (941)
Q Consensus 459 ~~~iiEaPTGTGKTls~ 475 (941)
..+++-+|||+|||-..
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36889999999999643
No 381
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=21.46 E-value=54 Score=35.70 Aligned_cols=28 Identities=21% Similarity=-0.084 Sum_probs=22.4
Q ss_pred hcCceeeeCCCCCchhHHHHHHHHHHHh
Q psy11433 457 AKGHCLLEMPSGTGKTTSLLSLIVAYMN 484 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls~L~~al~~~~ 484 (941)
.|...++-+|+|+|||.-.+..+...+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~ 148 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQL 148 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 6788999999999999877776665433
No 382
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=21.38 E-value=19 Score=45.63 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=27.7
Q ss_pred HHhhcCcEEEEccccccChhhhhHhhhhcCCCcEEEEecCccccH
Q psy11433 77 QAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121 (941)
Q Consensus 77 ~~~~~AdIVv~~y~yLl~~~~r~~~~~~l~~~~ivI~DEAHNL~d 121 (941)
..+..++|||++..-|++.. .. |..-.+|||||||.+.+
T Consensus 151 ~~l~~~~IlV~TP~~L~~~l-~~-----L~~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 151 QNLRNFKIVITTTQFLSKHY-RE-----LGHFDFIFVDDVDAILK 189 (1054)
T ss_dssp HSGGGCSEEEEEHHHHHHCS-TT-----SCCCSEEEESCHHHHHT
T ss_pred hhccCCCEEEEcHHHHHHHH-HH-----hccCCEEEEeChhhhhh
Confidence 34445999999987776532 22 34567999999999754
No 383
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=21.35 E-value=28 Score=33.82 Aligned_cols=16 Identities=38% Similarity=0.642 Sum_probs=13.4
Q ss_pred cCceeeeCCCCCchhH
Q psy11433 458 KGHCLLEMPSGTGKTT 473 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTl 473 (941)
|...++-+|+|+|||-
T Consensus 2 g~ii~l~G~~GaGKST 17 (189)
T 2bdt_A 2 KKLYIITGPAGVGKST 17 (189)
T ss_dssp EEEEEEECSTTSSHHH
T ss_pred CeEEEEECCCCCcHHH
Confidence 3567889999999986
No 384
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=21.06 E-value=73 Score=35.04 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCceeeeCCCCCchhH
Q psy11433 446 AYMVELKKALDAKGHCLLEMPSGTGKTT 473 (941)
Q Consensus 446 ~~M~~v~~al~~~~~~iiEaPTGTGKTl 473 (941)
+....+...-.....+++.+++||||++
T Consensus 140 ~~~~~~~~~a~~~~~vli~GesGtGKe~ 167 (368)
T 3dzd_A 140 EIKRLIPKIAKSKAPVLITGESGTGKEI 167 (368)
T ss_dssp HHHHHHHHHHTSCSCEEEECCTTSSHHH
T ss_pred HHHhhhhhhhccchhheEEeCCCchHHH
Confidence 3444444444567899999999999986
No 385
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=20.92 E-value=30 Score=34.52 Aligned_cols=14 Identities=29% Similarity=0.221 Sum_probs=12.2
Q ss_pred ceeeeCCCCCchhH
Q psy11433 460 HCLLEMPSGTGKTT 473 (941)
Q Consensus 460 ~~iiEaPTGTGKTl 473 (941)
.+++++|.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (214)
T 1e4v_A 2 RIILLGAPVAGKGT 15 (214)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46899999999985
No 386
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=20.69 E-value=31 Score=33.34 Aligned_cols=18 Identities=33% Similarity=0.329 Sum_probs=15.8
Q ss_pred hcCceeeeCCCCCchhHH
Q psy11433 457 AKGHCLLEMPSGTGKTTS 474 (941)
Q Consensus 457 ~~~~~iiEaPTGTGKTls 474 (941)
.|....+-+|+|+|||--
T Consensus 8 ~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 678899999999999963
No 387
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=20.66 E-value=78 Score=35.88 Aligned_cols=27 Identities=30% Similarity=0.207 Sum_probs=19.6
Q ss_pred cCceeeeCCCCCchhHHHHHHHHHHHh
Q psy11433 458 KGHCLLEMPSGTGKTTSLLSLIVAYMN 484 (941)
Q Consensus 458 ~~~~iiEaPTGTGKTls~L~~al~~~~ 484 (941)
+..+++-+|+|+|||-.....+..+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 467888899999999766555544433
Done!