AmiGO: BLAST Results


BLAST match view associations BLAST with ercc2 ercc2 ercc2 excision repair cross-complementing rodent repair deficiency, complementation group 2	gene_product from Danio rerio	2.7e-147
BLAST match view associations BLAST with ERCC2/XPD ERCC2/XPD ERCC2/XPD ERCC2/XPD protein	protein from Xiphophorus maculatus	3.9e-146
BLAST match view associations BLAST with Xpd Xpd Xpd Xeroderma pigmentosum D ortholog (H. sapiens)	protein from Drosophila melanogaster	6.3e-144
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit	protein from Homo sapiens	3.5e-141
BLAST match view associations BLAST with Ercc2 Ercc2 Ercc2 excision repair cross-complementing rodent repair deficiency, complementation group 2	gene from Rattus norvegicus	3.1e-140
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit	protein from Cricetulus griseus	3.9e-140
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit	protein from Bos taurus	5.0e-140
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit	protein from Bos taurus	5.0e-140
BLAST match view associations BLAST with Ercc2 Ercc2 Ercc2 excision repair cross-complementing rodent repair deficiency, complementation group 2	protein from Mus musculus	4.4e-139
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit	protein from Homo sapiens	6.4e-136
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 Uncharacterized protein	protein from Canis lupus familiaris	1.5e-134
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit	protein from Homo sapiens	9.1e-117
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 Uncharacterized protein	protein from Canis lupus familiaris	4.3e-111
BLAST match view associations BLAST with Y50D7A.2 Y50D7A.2 Y50D7A.2	gene from Caenorhabditis elegans	7.6e-106
BLAST match view associations BLAST with repD repD repD transcription factor IIH component	gene from Dictyostelium discoideum	3.4e-103
BLAST match view associations BLAST with RAD3 RAD3 RAD3	gene_product from Candida albicans	5.3e-101
BLAST match view associations BLAST with RAD3 RAD3 RAD3 Putative uncharacterized protein RAD3	protein from Candida albicans SC5314	5.3e-101
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit	protein from Homo sapiens	2.0e-98
BLAST match view associations BLAST with UVH6 UVH6 UVH6 ULTRAVIOLET HYPERSENSITIVE 6	protein from Arabidopsis thaliana	7.4e-96
BLAST match view associations BLAST with RAD3 RAD3 RAD3 5' to 3' DNA helicase	gene from Saccharomyces cerevisiae	4.1e-75
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit	protein from Homo sapiens	5.0e-55
BLAST match view associations BLAST with Y50D7A.11 Y50D7A.11 Y50D7A.11	gene from Caenorhabditis elegans	4.1e-41
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 cDNA FLJ57462, highly similar to TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-)	protein from Homo sapiens	9.2e-39
BLAST match view associations BLAST with I3LNA6 I3LNA6 I3LNA6 Uncharacterized protein	protein from Sus scrofa	1.1e-28
BLAST match view associations BLAST with I3LAE6 I3LAE6 I3LAE6 Uncharacterized protein	protein from Sus scrofa	5.9e-27
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit	protein from Homo sapiens	1.0e-24
BLAST match view associations BLAST with I3LHB7 I3LHB7 I3LHB7 Uncharacterized protein	protein from Sus scrofa	7.0e-23
BLAST match view associations BLAST with GL14463 GL14463 GL14463 Regulator of telomere elongation helicase 1 homolog	protein from Drosophila persimilis	8.7e-23
BLAST match view associations BLAST with GA17940 GA17940 GA17940 Regulator of telomere elongation helicase 1 homolog	protein from Drosophila pseudoobscura pseudoobscura	8.7e-23
BLAST match view associations BLAST with rtel1 rtel1 rtel1 regulator of telomere elongation helicase 1	gene_product from Danio rerio	1.9e-22
BLAST match view associations BLAST with Rtel1 Rtel1 Rtel1 regulator of telomere elongation helicase 1	protein from Mus musculus	3.2e-22
BLAST match view associations BLAST with CG4078 CG4078 CG4078	protein from Drosophila melanogaster	3.3e-22
BLAST match view associations BLAST with Rtel1 Rtel1 Rtel1 Regulator of telomere elongation helicase 1	protein from Mus spretus	4.0e-22
BLAST match view associations BLAST with GE16425 GE16425 GE16425 Regulator of telomere elongation helicase 1 homolog	protein from Drosophila yakuba	4.1e-22
BLAST match view associations BLAST with GG18780 GG18780 GG18780 Regulator of telomere elongation helicase 1 homolog	protein from Drosophila erecta	6.6e-22
BLAST match view associations BLAST with GF20802 GF20802 GF20802 Regulator of telomere elongation helicase 1 homolog	protein from Drosophila ananassae	3.8e-21
BLAST match view associations BLAST with CPIJ003765 CPIJ003765 CPIJ003765 Regulator of telomere elongation helicase 1 homolog	protein from Culex quinquefasciatus	5.1e-21
BLAST match view associations BLAST with Rtel1 Rtel1 Rtel1 regulator of telomere elongation helicase 1	gene from Rattus norvegicus	7.3e-21
BLAST match view associations BLAST with GI15901 GI15901 GI15901 Regulator of telomere elongation helicase 1 homolog	protein from Drosophila mojavensis	2.0e-20
BLAST match view associations BLAST with RTEL1 RTEL1 RTEL1 Uncharacterized protein	protein from Canis lupus familiaris	3.8e-20
BLAST match view associations BLAST with AAEL008960 AAEL008960 AAEL008960 Regulator of telomere elongation helicase 1 homolog	protein from Aedes aegypti	4.8e-20
BLAST match view associations BLAST with GH24089 GH24089 GH24089 Regulator of telomere elongation helicase 1 homolog	protein from Drosophila grimshawi	7.9e-20
BLAST match view associations BLAST with GJ16649 GJ16649 GJ16649 Regulator of telomere elongation helicase 1 homolog	protein from Drosophila virilis	1.0e-19
BLAST match view associations BLAST with GK24923 GK24923 GK24923 Regulator of telomere elongation helicase 1 homolog	protein from Drosophila willistoni	1.7e-19
BLAST match view associations BLAST with RTEL1 RTEL1 RTEL1 Regulator of telomere elongation helicase 1	protein from Homo sapiens	4.5e-19
BLAST match view associations BLAST with RTEL1 RTEL1 RTEL1 Regulator of telomere elongation helicase 1	protein from Bos taurus	5.2e-19
BLAST match view associations BLAST with RTEL1 RTEL1 RTEL1 Protein RTEL1-TNFRSF6B	protein from Homo sapiens	8.6e-19
BLAST match view associations BLAST with rtel-1 rtel-1 rtel-1	gene from Caenorhabditis elegans	4.7e-18
BLAST match view associations BLAST with rtel-1 rtel-1 rtel-1 Regulator of telomere elongation helicase 1 homolog	protein from Caenorhabditis elegans	4.7e-18
BLAST match view associations BLAST with RTEL1 RTEL1 RTEL1 Regulator of telomere elongation helicase 1	protein from Pongo abelii	5.0e-18
BLAST match view associations BLAST with orf19.2000 orf19.2000 orf19.2000	gene_product from Candida albicans	8.1e-18
BLAST match view associations BLAST with rtel-1 rtel-1 rtel-1 Regulator of telomere elongation helicase 1 homolog	protein from Caenorhabditis briggsae	8.7e-18
BLAST match view associations BLAST with BRIP1 BRIP1 BRIP1 39S ribosomal protein L36, mitochondrial	protein from Homo sapiens	8.7e-18
BLAST match view associations BLAST with AGAP000634 AGAP000634 AGAP000634 Regulator of telomere elongation helicase 1 homolog	protein from Anopheles gambiae	9.5e-18
BLAST match view associations BLAST with BRIP1 BRIP1 BRIP1 Fanconi anemia group J protein	protein from Homo sapiens	2.5e-17
BLAST match view associations BLAST with Gga.49055 Gga.49055 Gga.49055 Uncharacterized protein	protein from Gallus gallus	7.5e-17
BLAST match view associations BLAST with BRIP1 BRIP1 BRIP1 Fanconi anemia group J protein homolog	protein from Gallus gallus	8.6e-17
BLAST match view associations BLAST with RTEL1 RTEL1 RTEL1 Regulator of telomere elongation helicase 1	protein from Bos taurus	2.1e-16
BLAST match view associations BLAST with BRIP1 BRIP1 BRIP1 Uncharacterized protein	protein from Bos taurus	3.8e-16
BLAST match view associations BLAST with ddx11 ddx11 ddx11 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	gene_product from Danio rerio	4.8e-16
BLAST match view associations BLAST with BRIP1 BRIP1 BRIP1 Uncharacterized protein	protein from Bos taurus	5.0e-16
BLAST match view associations BLAST with BRIP1 BRIP1 BRIP1 Uncharacterized protein	protein from Canis lupus familiaris	6.3e-16
BLAST match view associations BLAST with BRIP1 BRIP1 BRIP1 Uncharacterized protein	protein from Canis lupus familiaris	7.0e-16
BLAST match view associations BLAST with DDX11L8 DDX11L8 DDX11L8 Putative ATP-dependent RNA helicase DDX11-like protein 8	protein from Homo sapiens	1.0e-15
BLAST match view associations BLAST with DDX11 DDX11 DDX11 Uncharacterized protein	protein from Gallus gallus	1.1e-15
BLAST match view associations BLAST with RTEL1-TNFRSF6B RTEL1-TNFRSF6B RTEL1-TNFRSF6B Protein RTEL1-TNFRSF6B	protein from Homo sapiens	1.7e-15
BLAST match view associations BLAST with fncJ fncJ fncJ DEAD/DEAH box helicase	gene from Dictyostelium discoideum	2.9e-15
BLAST match view associations BLAST with DDX12P DDX12P DDX12P Putative ATP-dependent RNA helicase DDX12	protein from Homo sapiens	6.7e-15
BLAST match view associations BLAST with LOC100515028 LOC100515028 LOC100515028 Uncharacterized protein	protein from Sus scrofa	1.1e-14
BLAST match view associations BLAST with Ddx11 Ddx11 Ddx11 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein from Mus musculus	1.2e-14
BLAST match view associations BLAST with DDX11 DDX11 DDX11 Uncharacterized protein	protein from Canis lupus familiaris	1.6e-14
BLAST match view associations BLAST with Brip1 Brip1 Brip1 BRCA1 interacting protein C-terminal helicase 1	protein from Mus musculus	1.6e-14
BLAST match view associations BLAST with LOC100525359 LOC100525359 LOC100525359 Uncharacterized protein	protein from Sus scrofa	5.3e-14
BLAST match view associations BLAST with DDX11 DDX11 DDX11 Probable ATP-dependent RNA helicase DDX11	protein from Homo sapiens	1.6e-13
BLAST match view associations BLAST with AT1G79950 AT1G79950 AT1G79950	protein from Arabidopsis thaliana	3.1e-13
BLAST match view associations BLAST with AT1G20720 AT1G20720 AT1G20720	protein from Arabidopsis thaliana	3.6e-13
BLAST match view associations BLAST with CG11403 CG11403 CG11403	protein from Drosophila melanogaster	7.5e-13
BLAST match view associations BLAST with CHL1 CHL1 CHL1 Probable DNA helicase	gene from Saccharomyces cerevisiae	1.7e-12
BLAST match view associations BLAST with E1BL06 E1BL06 E1BL06 Uncharacterized protein	protein from Bos taurus	1.8e-12
BLAST match view associations BLAST with Ddx11 Ddx11 Ddx11 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	gene from Rattus norvegicus	3.4e-12
BLAST match view associations BLAST with brip1 brip1 brip1 BRCA1 interacting protein C-terminal helicase 1	gene_product from Danio rerio	1.1e-11
BLAST match view associations BLAST with AT1G79890 AT1G79890 AT1G79890	protein from Arabidopsis thaliana	4.1e-11
BLAST match view associations BLAST with GM12432 GM12432 GM12432 Regulator of telomere elongation helicase 1 homolog	protein from Drosophila sechellia	5.9e-11
BLAST match view associations BLAST with Brip1 Brip1 Brip1 BRCA1 interacting protein C-terminal helicase 1	gene from Rattus norvegicus	3.4e-09
BLAST match view associations BLAST with dog-1 dog-1 dog-1	gene from Caenorhabditis elegans	5.4e-08
BLAST match view associations BLAST with BRIP1 BRIP1 BRIP1 Uncharacterized protein	protein from Bos taurus	7.9e-08
BLAST match view associations BLAST with PFL_3198 PFL_3198 PFL_3198 DEAD 2 domain protein	protein from Pseudomonas protegens Pf-5	1.5e-06
BLAST match view associations BLAST with BRIP1 BRIP1 BRIP1 39S ribosomal protein L36, mitochondrial	protein from Homo sapiens	2.5e-06
BLAST match view associations BLAST with chl-1 chl-1 chl-1	gene from Caenorhabditis elegans	3.8e-06
BLAST match view associations BLAST with Saci_0192 Saci_0192 Saci_0192 ATP-dependent DNA helicase Saci_0192	protein from Sulfolobus acidocaldarius DSM 639	4.2e-05
BLAST match view associations BLAST with MAL13P1.134 MAL13P1.134 MAL13P1.134 helicase, putative	gene from Plasmodium falciparum	0.00085
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy11433
        (941 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

ZFIN|ZDB-GENE-040426-997 - symbol:ercc2 "excision repair ...   890  2.7e-147  3
UNIPROTKB|Q91941 - symbol:ERCC2/XPD "ERCC2/XPD protein" s...   877  3.9e-146  3
FB|FBgn0261850 - symbol:Xpd "Xeroderma pigmentosum D" spe...   823  6.3e-144  3
UNIPROTKB|P18074 - symbol:ERCC2 "TFIIH basal transcriptio...   841  3.5e-141  3
RGD|1309109 - symbol:Ercc2 "excision repair cross-complem...   828  3.1e-140  3
UNIPROTKB|Q60452 - symbol:ERCC2 "TFIIH basal transcriptio...   827  3.9e-140  3
UNIPROTKB|A6QLJ0 - symbol:ERCC2 "TFIIH basal transcriptio...   829  5.0e-140  3
UNIPROTKB|F1N2P3 - symbol:ERCC2 "TFIIH basal transcriptio...   829  5.0e-140  3
MGI|MGI:95413 - symbol:Ercc2 "excision repair cross-compl...   817  4.4e-139  3
UNIPROTKB|A8MX75 - symbol:ERCC2 "TFIIH basal transcriptio...   841  6.4e-136  3
UNIPROTKB|F1PMH9 - symbol:ERCC2 "Uncharacterized protein"...   835  1.5e-134  3
UNIPROTKB|E7EVE9 - symbol:ERCC2 "TFIIH basal transcriptio...   621  9.1e-117  3
POMBASE|SPAC1D4.12 - symbol:rad15 "transcription factor T...   655  3.0e-112  3
UNIPROTKB|J9NWT1 - symbol:ERCC2 "Uncharacterized protein"...   835  4.3e-111  2
WB|WBGene00021752 - symbol:Y50D7A.2 species:6239 "Caenorh...   582  7.6e-106  3
DICTYBASE|DDB_G0267414 - symbol:repD "transcription facto...   603  3.4e-103  3
ASPGD|ASPL0000055138 - symbol:AN9436 species:162425 "Emer...   649  8.0e-102  3
CGD|CAL0002854 - symbol:RAD3 species:5476 "Candida albica...   627  5.3e-101  3
UNIPROTKB|Q5AFE9 - symbol:RAD3 "Putative uncharacterized ...   627  5.3e-101  3
UNIPROTKB|K7EIT8 - symbol:ERCC2 "TFIIH basal transcriptio...   662  2.0e-98   2
TAIR|locus:2014525 - symbol:UVH6 "ULTRAVIOLET HYPERSENSIT...   582  7.4e-96   3
SGD|S000000973 - symbol:RAD3 "5' to 3' DNA helicase" spec...   592  4.1e-75   2
UNIPROTKB|K7EKF3 - symbol:ERCC2 "TFIIH basal transcriptio...   574  5.0e-55   1
WB|WBGene00021759 - symbol:Y50D7A.11 species:6239 "Caenor...   367  4.1e-41   2
UNIPROTKB|B4E0F6 - symbol:ERCC2 "TFIIH basal transcriptio...   424  9.2e-39   1
UNIPROTKB|I3LNA6 - symbol:I3LNA6 "Uncharacterized protein...   330  1.1e-28   1
UNIPROTKB|I3LAE6 - symbol:I3LAE6 "Uncharacterized protein...   314  5.9e-27   1
UNIPROTKB|K7ENL1 - symbol:ERCC2 "TFIIH basal transcriptio...   201  1.0e-24   3
UNIPROTKB|I3LHB7 - symbol:ERCC2 "Uncharacterized protein"...   276  7.0e-23   1
UNIPROTKB|B4GU19 - symbol:GL14463 "Regulator of telomere ...   197  8.7e-23   4
UNIPROTKB|Q29FS3 - symbol:GA17940 "Regulator of telomere ...   197  8.7e-23   4
ZFIN|ZDB-GENE-050306-11 - symbol:rtel1 "regulator of telo...   196  1.9e-22   4
MGI|MGI:2139369 - symbol:Rtel1 "regulator of telomere elo...   185  3.2e-22   4
FB|FBgn0029798 - symbol:CG4078 species:7227 "Drosophila m...   194  3.3e-22   4
UNIPROTKB|Q6H1L8 - symbol:Rtel1 "Regulator of telomere el...   185  4.0e-22   4
UNIPROTKB|B4PZB4 - symbol:GE16425 "Regulator of telomere ...   195  4.1e-22   4
UNIPROTKB|B3NSW1 - symbol:GG18780 "Regulator of telomere ...   194  6.6e-22   4
UNIPROTKB|B3MSG8 - symbol:GF20802 "Regulator of telomere ...   189  3.8e-21   4
UNIPROTKB|D4ACH4 - symbol:Rtel1 "Regulator of telomere el...   180  4.8e-21   4
UNIPROTKB|B0W9F4 - symbol:CPIJ003765 "Regulator of telome...   195  5.1e-21   4
RGD|1306721 - symbol:Rtel1 "regulator of telomere elongat...   180  7.3e-21   4
UNIPROTKB|B4L1Z2 - symbol:GI15901 "Regulator of telomere ...   178  2.0e-20   4
UNIPROTKB|E2RLA6 - symbol:RTEL1 "Uncharacterized protein"...   185  3.8e-20   4
UNIPROTKB|Q16X92 - symbol:AAEL008960 "Regulator of telome...   181  4.8e-20   4
UNIPROTKB|B4JNS2 - symbol:GH24089 "Regulator of telomere ...   171  7.9e-20   4
UNIPROTKB|B4M891 - symbol:GJ16649 "Regulator of telomere ...   177  1.0e-19   4
UNIPROTKB|B4NDG5 - symbol:GK24923 "Regulator of telomere ...   171  1.7e-19   4
UNIPROTKB|Q9NZ71 - symbol:RTEL1 "Regulator of telomere el...   169  4.5e-19   4
UNIPROTKB|A4K436 - symbol:RTEL1 "Regulator of telomere el...   175  5.2e-19   4
UNIPROTKB|F6WH68 - symbol:RTEL1 "Protein RTEL1-TNFRSF6B" ...   169  8.6e-19   4
WB|WBGene00009124 - symbol:rtel-1 species:6239 "Caenorhab...   181  4.7e-18   4
UNIPROTKB|Q93575 - symbol:rtel-1 "Regulator of telomere e...   181  4.7e-18   4
UNIPROTKB|Q5RE34 - symbol:RTEL1 "Regulator of telomere el...   169  5.0e-18   4
CGD|CAL0004313 - symbol:orf19.2000 species:5476 "Candida ...   142  8.1e-18   4
UNIPROTKB|A8WS58 - symbol:rtel-1 "Regulator of telomere e...   186  8.7e-18   4
UNIPROTKB|J3QSE8 - symbol:BRIP1 "Fanconi anemia group J p...   153  8.7e-18   4
UNIPROTKB|Q7QEI1 - symbol:AGAP000634 "Regulator of telome...   168  9.5e-18   4
UNIPROTKB|Q9BX63 - symbol:BRIP1 "Fanconi anemia group J p...   153  2.5e-17   4
POMBASE|SPAC3G6.11 - symbol:chl1 "ATP-dependent DNA helic...   139  2.7e-17   5
UNIPROTKB|E1BTS7 - symbol:Gga.49055 "Uncharacterized prot...   158  6.3e-17   4
UNIPROTKB|E1BTS6 - symbol:Gga.49055 "Uncharacterized prot...   158  7.4e-17   4
UNIPROTKB|F1NE49 - symbol:Gga.49055 "Uncharacterized prot...   158  7.5e-17   4
UNIPROTKB|E1C1X9 - symbol:BRIP1 "Fanconi anemia group J p...   168  8.5e-17   4
UNIPROTKB|Q3YK19 - symbol:BRIP1 "Fanconi anemia group J p...   168  8.6e-17   4
UNIPROTKB|F1MWN6 - symbol:RTEL1 "Regulator of telomere el...   175  2.1e-16   3
UNIPROTKB|E1BNG9 - symbol:BRIP1 "Uncharacterized protein"...   149  3.8e-16   4
ZFIN|ZDB-GENE-041114-191 - symbol:ddx11 "DEAD/H (Asp-Glu-...   159  4.8e-16   4
UNIPROTKB|F1MMS0 - symbol:BRIP1 "Uncharacterized protein"...   149  5.0e-16   4
UNIPROTKB|J9NVZ8 - symbol:BRIP1 "Uncharacterized protein"...   146  6.3e-16   4
UNIPROTKB|E2RHN5 - symbol:BRIP1 "Uncharacterized protein"...   146  7.0e-16   4
UNIPROTKB|A8MPP1 - symbol:DDX11L8 "Putative ATP-dependent...   145  1.0e-15   4
UNIPROTKB|F1NN99 - symbol:DDX11 "Uncharacterized protein"...   141  1.1e-15   4
UNIPROTKB|D6RA96 - symbol:RTEL1-TNFRSF6B "Protein RTEL1-T...   169  1.7e-15   4
DICTYBASE|DDB_G0286621 - symbol:fncJ "DEAD/DEAH box helic...   145  2.9e-15   4
UNIPROTKB|Q92771 - symbol:DDX12P "Putative ATP-dependent ...   142  6.7e-15   4
UNIPROTKB|F1SK84 - symbol:DDX11 "Uncharacterized protein"...   137  1.1e-14   4
MGI|MGI:2443590 - symbol:Ddx11 "DEAD/H (Asp-Glu-Ala-Asp/H...   138  1.2e-14   4
UNIPROTKB|E2RGR5 - symbol:DDX11 "Uncharacterized protein"...   138  1.6e-14   5
MGI|MGI:2442836 - symbol:Brip1 "BRCA1 interacting protein...   153  1.6e-14   4
UNIPROTKB|I3LBL1 - symbol:BRIP1 "Uncharacterized protein"...   139  5.3e-14   3
UNIPROTKB|Q96FC9 - symbol:DDX11 "Probable ATP-dependent R...   145  1.6e-13   3
TAIR|locus:2016209 - symbol:AT1G79950 species:3702 "Arabi...   127  3.1e-13   4
TAIR|locus:2030497 - symbol:AT1G20720 species:3702 "Arabi...   161  3.6e-13   4
FB|FBgn0026876 - symbol:CG11403 species:7227 "Drosophila ...   118  7.5e-13   4
UNIPROTKB|D4ACW5 - symbol:Brip1 "Protein Brip1" species:1...   147  7.9e-13   3
SGD|S000005929 - symbol:CHL1 "Probable DNA helicase" spec...   133  1.7e-12   3
UNIPROTKB|E1BL06 - symbol:E1BL06 "Uncharacterized protein...   131  1.8e-12   4
RGD|1306675 - symbol:Ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) ...   132  3.4e-12   4
ZFIN|ZDB-GENE-081107-11 - symbol:brip1 "BRCA1 interacting...   134  1.1e-11   4
TAIR|locus:2017894 - symbol:AT1G79890 species:3702 "Arabi...   118  4.1e-11   4
UNIPROTKB|B4I0K4 - symbol:GM12432 "Regulator of telomere ...   114  5.9e-11   3
RGD|1307659 - symbol:Brip1 "BRCA1 interacting protein C-t...   102  3.4e-09   4
WB|WBGene00001049 - symbol:dog-1 species:6239 "Caenorhabd...   126  5.4e-08   4
ASPGD|ASPL0000038959 - symbol:AN10414 species:162425 "Eme...   112  5.7e-08   3
UNIPROTKB|G3N0I3 - symbol:BRIP1 "Uncharacterized protein"...    93  7.9e-08   4
UNIPROTKB|Q4KBT0 - symbol:PFL_3198 "DEAD 2 domain protein...   104  1.5e-06   3
UNIPROTKB|J3KS24 - symbol:BRIP1 "Fanconi anemia group J p...   121  2.5e-06   1
WB|WBGene00010839 - symbol:chl-1 species:6239 "Caenorhabd...   110  3.8e-06   3
UNIPROTKB|Q4JC68 - symbol:Saci_0192 "ATP-dependent DNA he...   118  4.2e-05   2
GENEDB_PFALCIPARUM|MAL13P1.134 - symbol:MAL13P1.134 "heli...    98  0.00085   4

WARNING:  Descriptions of 1 database sequences were not reported due to the
          limiting value of parameter V = 100.


>ZFIN|ZDB-GENE-040426-997 [details] [associations]
            symbol:ercc2 "excision repair cross-complementing
            rodent repair deficiency, complementation group 2" species:7955
            "Danio rerio" [GO:0016817 "hydrolase activity, acting on acid
            anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
            on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0006139 "nucleobase-containing
            compound metabolic process" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
            InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
            PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
            SMART:SM00491 INTERPRO:IPR013020 ZFIN:ZDB-GENE-040426-997
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004003
            GO:GO:0006289 TIGRFAMs:TIGR00604 GeneTree:ENSGT00550000075092
            EMBL:CR855332 EMBL:JN172105 IPI:IPI00495155 UniGene:Dr.5152
            Ensembl:ENSDART00000141618 Uniprot:F1Q5E7
        Length = 760

 Score = 890 (318.4 bits), Expect = 2.7e-147, Sum P(3) = 2.7e-147
 Identities = 170/289 (58%), Positives = 215/289 (74%)

Query:     1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
             VS  R GK VDG+CHSLT+S +R +H++  N PVC FYE+FD VGR+ P+ PG+Y++  L
Sbjct:   121 VSSLRFGKEVDGKCHSLTASYIRAQHQSNPNQPVCQFYEEFDNVGRQVPIPPGIYNLDDL 180

Query:    61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
             K+ GR  G CPYFLAR A++HA IVVYSYHYLLDPKIA++VSKELA+ SVVVFDEAHNID
Sbjct:   181 KDFGRRKGWCPYFLARYALLHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240

Query:   121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
             NVC+DS+SV I RRT+++   N++TL+ T+  +KE D+AKLREEY RLVEGL++A  ARE
Sbjct:   241 NVCIDSMSVNITRRTLDRCQTNVETLQNTISRIKETDAAKLREEYRRLVEGLKEANVARE 300

Query:   181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
             TD+ L+NPVLPDEILQE VPG+IRTAEHFVGF+KRF+EYLK RLR+  VVQES   FLKD
Sbjct:   301 TDIYLSNPVLPDEILQEAVPGSIRTAEHFVGFMKRFLEYLKARLRIHHVVQESAPQFLKD 360

Query:   241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKV 289
             I  K    +  +  R+       L   L +  +   SP T +   ++ V
Sbjct:   361 IFEKVC--IDRKPLRFCAERLRSLLRTLEIADIADFSPITLISHFATLV 407

 Score = 700 (251.5 bits), Expect = 1.4e-112, Sum P(2) = 1.4e-112
 Identities = 128/196 (65%), Positives = 161/196 (82%)

Query:   656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
             VS  R GK VDG+CHSLT+S +R +H++  N PVC FYE+FD VGR+ P+ PG+Y++  L
Sbjct:   121 VSSLRFGKEVDGKCHSLTASYIRAQHQSNPNQPVCQFYEEFDNVGRQVPIPPGIYNLDDL 180

Query:   716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
             K+ GR  G CPYFLAR A++HA IVVYSYHYLLDPKIA++VSKELA+ SVVVFDEAHNID
Sbjct:   181 KDFGRRKGWCPYFLARYALLHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240

Query:   776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
             NVC+DS+SV I RRT+++   N++TL+ T+  +KE D+AKLREEY RLVEGL++A  ARE
Sbjct:   241 NVCIDSMSVNITRRTLDRCQTNVETLQNTISRIKETDAAKLREEYRRLVEGLKEANVARE 300

Query:   836 TDVVLANPVLPDEILQ 851
             TD+ L+NPVLPDEILQ
Sbjct:   301 TDIYLSNPVLPDEILQ 316

 Score = 594 (214.2 bits), Expect = 2.0e-114, Sum P(3) = 2.0e-114
 Identities = 122/211 (57%), Positives = 152/211 (72%)

Query:   214 KRFIEYLKTR--LRVQQVVQESPATFLKD-ISSKPAPSMISEAYRYI-FSTE--EHLKTR 267
             +R +E LK     R   +   +P   L D I  +  P  I  A  ++ F     E+LK R
Sbjct:   286 RRLVEGLKEANVARETDIYLSNPV--LPDEILQEAVPGSIRTAEHFVGFMKRFLEYLKAR 343

Query:   268 LRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHL 327
             LR+  VVQES   FLKDI  KVCI+RKPLRFCAERL SLLRTLEI ++ DFS + +I+H 
Sbjct:   344 LRIHHVVQESAPQFLKDIFEKVCIDRKPLRFCAERLRSLLRTLEIADIADFSPITLISHF 403

Query:   328 ATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSP 387
             ATLVS+Y+KGF II+EPF DK PT+ NPVL+F C+D S+AIKPVF RFQTV+ITSGTLSP
Sbjct:   404 ATLVSTYSKGFTIIIEPFEDKTPTIANPVLHFSCMDPSIAIKPVFGRFQTVIITSGTLSP 463

Query:   388 LDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
             LD+YP+IL+F+PV M SF+MTLAR CL P++
Sbjct:   464 LDIYPRILDFRPVTMASFTMTLARTCLCPLI 494

 Score = 431 (156.8 bits), Expect = 1.4e-112, Sum P(2) = 1.4e-112
 Identities = 86/120 (71%), Positives = 96/120 (80%)

Query:   424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             M L ID L V+FPY+YIYPEQY+YM+ELK+ LDAKGH +LEMPSGTGKT SLLSLIVAY 
Sbjct:     1 MKLNIDGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ 60

Query:   484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN-MTGLVLSSRKNLCIHSE 542
               +PL+VTKL+YCSRTVPEIEKVVEEL +L DYY K     N    L LSSRKNLCIH E
Sbjct:    61 KTYPLEVTKLVYCSRTVPEIEKVVEELRKLMDYYSKQTGVKNDFLALALSSRKNLCIHPE 120

 Score = 301 (111.0 bits), Expect = 2.7e-147, Sum P(3) = 2.7e-147
 Identities = 64/111 (57%), Positives = 81/111 (72%)

Query:   821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
             ARL E LRD    RE D +  + +          ++GKTDYG+MIFADKR+AR+DKR KL
Sbjct:   635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMIFADKRYARADKRGKL 693

Query:   876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
             P+WIQE+LTD   NL+ +E VQLSK +LRQMAQPF RED LG++LL+L+QL
Sbjct:   694 PRWIQEHLTDGSLNLTIDETVQLSKHFLRQMAQPFRREDQLGLSLLTLEQL 744

 Score = 284 (105.0 bits), Expect = 2.7e-147, Sum P(3) = 2.7e-147
 Identities = 61/138 (44%), Positives = 91/138 (65%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             + S FETR+D +VIRNYG LL++++ +VPDG+V FFTSY+Y+E++VASWY+QGI++N+Q+
Sbjct:   504 MTSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFTSYMYMENIVASWYEQGILENIQR 563

Query:   640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAV 699
              KL+FIETQDA ++    ++      +GR   L S +   R K  E I   DF   F   
Sbjct:   564 NKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA---RGKVSEGI---DFVHHF--- 614

Query:   700 GREAPL--APGVYSITKL 715
             GR   +   P VY+ +++
Sbjct:   615 GRAVIMFGVPYVYTQSRI 632

 Score = 164 (62.8 bits), Expect = 1.2e-134, Sum P(3) = 1.2e-134
 Identities = 27/55 (49%), Positives = 44/55 (80%)

Query:   541 SEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRN 595
             S+FETR+D +VIRNYG LL++++ +VPDG+V FFTSY+Y+E++  +  +  ++ N
Sbjct:   506 SKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFTSYMYMENIVASWYEQGILEN 560


>UNIPROTKB|Q91941 [details] [associations]
            symbol:ERCC2/XPD "ERCC2/XPD protein" species:8083
            "Xiphophorus maculatus" [GO:0006283 "transcription-coupled
            nucleotide-excision repair" evidence=ISS] [GO:0006917 "induction of
            apoptosis" evidence=ISS] [GO:0043139 "5'-3' DNA helicase activity"
            evidence=ISS] InterPro:IPR001945 InterPro:IPR002464
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
            Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
            GO:GO:0005634 GO:GO:0006917 GO:GO:0003677 GO:GO:0004003
            GO:GO:0006283 TIGRFAMs:TIGR00604 GO:GO:0043139 HOVERGEN:HBG051498
            EMBL:U17896 PIR:I51720 ProteinModelPortal:Q91941 Uniprot:Q91941
        Length = 760

 Score = 877 (313.8 bits), Expect = 3.9e-146, Sum P(3) = 3.9e-146
 Identities = 170/289 (58%), Positives = 215/289 (74%)

Query:     1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
             VS  R GK VDG+CHSLT+S +R +  +  N PVC FYE+FDAVGR+ PL  G+Y++  L
Sbjct:   121 VSSLRFGKEVDGKCHSLTASYIRAQRHSNPNQPVCRFYEEFDAVGRQVPLPAGIYNLDDL 180

Query:    61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
             K+ GR  G CPY+LAR +I+HA IVVYSYHYLLDPKIA++VSKELA+ SVVVFDEAHNID
Sbjct:   181 KDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240

Query:   121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
             NVC+DS+SV I RRT+++   N+ TL+ T+ ++KE D+AKLREEY RLVEGL++A  ARE
Sbjct:   241 NVCIDSMSVNITRRTVDRCQNNVDTLQNTIHKIKETDAAKLREEYRRLVEGLKEANVARE 300

Query:   181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
             TD+ LANPVLPDE+LQE VPG+IRTAEHFVGFL+RF+EYLK RLRVQ VVQES   FLKD
Sbjct:   301 TDIYLANPVLPDEVLQEAVPGSIRTAEHFVGFLRRFLEYLKARLRVQHVVQESAPQFLKD 360

Query:   241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKV 289
             I  K    +  +  R+     + L   L +  +   S  T + + ++ V
Sbjct:   361 IFDKVC--IDRKPLRFCAERLQCLLRTLEIADIADFSAVTLISNFATLV 407

 Score = 687 (246.9 bits), Expect = 7.9e-112, Sum P(2) = 7.9e-112
 Identities = 127/196 (64%), Positives = 159/196 (81%)

Query:   656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
             VS  R GK VDG+CHSLT+S +R +  +  N PVC FYE+FDAVGR+ PL  G+Y++  L
Sbjct:   121 VSSLRFGKEVDGKCHSLTASYIRAQRHSNPNQPVCRFYEEFDAVGRQVPLPAGIYNLDDL 180

Query:   716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
             K+ GR  G CPY+LAR +I+HA IVVYSYHYLLDPKIA++VSKELA+ SVVVFDEAHNID
Sbjct:   181 KDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240

Query:   776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
             NVC+DS+SV I RRT+++   N+ TL+ T+ ++KE D+AKLREEY RLVEGL++A  ARE
Sbjct:   241 NVCIDSMSVNITRRTVDRCQNNVDTLQNTIHKIKETDAAKLREEYRRLVEGLKEANVARE 300

Query:   836 TDVVLANPVLPDEILQ 851
             TD+ LANPVLPDE+LQ
Sbjct:   301 TDIYLANPVLPDEVLQ 316

 Score = 576 (207.8 bits), Expect = 1.7e-112, Sum P(3) = 1.7e-112
 Identities = 118/211 (55%), Positives = 153/211 (72%)

Query:   214 KRFIEYLKTR--LRVQQVVQESPATFLKD-ISSKPAPSMISEAYRYI-FSTE--EHLKTR 267
             +R +E LK     R   +   +P   L D +  +  P  I  A  ++ F     E+LK R
Sbjct:   286 RRLVEGLKEANVARETDIYLANPV--LPDEVLQEAVPGSIRTAEHFVGFLRRFLEYLKAR 343

Query:   268 LRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHL 327
             LRVQ VVQES   FLKDI  KVCI+RKPLRFCAERL  LLRTLEI ++ DFS++ +I++ 
Sbjct:   344 LRVQHVVQESAPQFLKDIFDKVCIDRKPLRFCAERLQCLLRTLEIADIADFSAVTLISNF 403

Query:   328 ATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSP 387
             ATLVS+Y++GF II+EPF D+ PT+ NPVL+F C+D S+AIKPVF RFQ+V+ITSGTLSP
Sbjct:   404 ATLVSTYSQGFTIIIEPFEDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVIITSGTLSP 463

Query:   388 LDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
             LD+YP+IL+F+PV M SF+MTLAR CL P++
Sbjct:   464 LDIYPRILDFRPVTMASFTMTLARTCLCPLI 494

 Score = 437 (158.9 bits), Expect = 7.9e-112, Sum P(2) = 7.9e-112
 Identities = 86/120 (71%), Positives = 98/120 (81%)

Query:   424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             M L I+ L V+FPY+YIYPEQY+YM+ELK+ LDAKGH +LEMPSGTGKT SLLSLIVAY 
Sbjct:     1 MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ 60

Query:   484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN-MTGLVLSSRKNLCIHSE 542
              A PLDVTKL+YCSRTVPEIEKVVEEL +L ++Y K   E+N    L LSSRKNLCIH E
Sbjct:    61 RAFPLDVTKLIYCSRTVPEIEKVVEELRKLMEFYAKETGEVNNFLALSLSSRKNLCIHPE 120

 Score = 297 (109.6 bits), Expect = 3.9e-146, Sum P(3) = 3.9e-146
 Identities = 63/111 (56%), Positives = 81/111 (72%)

Query:   821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
             ARL E LRD    RE D +  + +          ++GKTDYG+MIFADKR+ARSDKR KL
Sbjct:   635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCLGRAIRGKTDYGLMIFADKRYARSDKRGKL 693

Query:   876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
             P+WIQE++ D   NL+ +EAVQLSK +LRQMAQPF +ED LG++LL+L+QL
Sbjct:   694 PRWIQEHINDGSLNLTVDEAVQLSKHFLRQMAQPFRQEDQLGLSLLTLEQL 744

 Score = 290 (107.1 bits), Expect = 3.9e-146, Sum P(3) = 3.9e-146
 Identities = 64/138 (46%), Positives = 91/138 (65%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L S FETR+D +VIRNYG LL++++ VVPDG+V FFTSY+Y+E++VASWY+QGI++N+QK
Sbjct:   504 LSSKFETREDFAVIRNYGNLLLEMSAVVPDGIVAFFTSYVYMENIVASWYEQGILENIQK 563

Query:   640 RKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAV 699
              KL+FIETQDA ++    ++      +GR   L S +   R K  E I   DF   F   
Sbjct:   564 NKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA---RGKVSEGI---DFVHHF--- 614

Query:   700 GREAPL--APGVYSITKL 715
             GR   +   P VY+ +++
Sbjct:   615 GRAVIMFGVPYVYTQSRI 632

 Score = 166 (63.5 bits), Expect = 4.5e-133, Sum P(3) = 4.5e-133
 Identities = 28/59 (47%), Positives = 46/59 (77%)

Query:   537 LCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRN 595
             + + S+FETR+D +VIRNYG LL++++ VVPDG+V FFTSY+Y+E++  +  +  ++ N
Sbjct:   502 VALSSKFETREDFAVIRNYGNLLLEMSAVVPDGIVAFFTSYVYMENIVASWYEQGILEN 560


>FB|FBgn0261850 [details] [associations]
            symbol:Xpd "Xeroderma pigmentosum D" species:7227 "Drosophila
            melanogaster" [GO:0006289 "nucleotide-excision repair"
            evidence=ISS;IDA] [GO:0001113 "transcriptional open complex
            formation at RNA polymerase II promoter" evidence=ISS] [GO:0005634
            "nucleus" evidence=IDA] [GO:0043141 "ATP-dependent 5'-3' DNA
            helicase activity" evidence=ISS;IDA] [GO:0006974 "response to DNA
            damage stimulus" evidence=IDA] [GO:0005675 "holo TFIIH complex"
            evidence=ISS] [GO:0009411 "response to UV" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005703 "polytene
            chromosome puff" evidence=IDA] [GO:0000439 "core TFIIH complex"
            evidence=ISS;IDA] [GO:0001111 "promoter clearance from RNA
            polymerase II promoter" evidence=ISS] [GO:0005705 "polytene
            chromosome interband" evidence=IDA] [GO:0006367 "transcription
            initiation from RNA polymerase II promoter" evidence=ISS]
            [GO:0004386 "helicase activity" evidence=ISS] [GO:0007088
            "regulation of mitosis" evidence=IMP] [GO:0010972 "negative
            regulation of G2/M transition of mitotic cell cycle" evidence=IDA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IDA] [GO:0051983 "regulation of chromosome
            segregation" evidence=IMP] InterPro:IPR001945 InterPro:IPR002464
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
            Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 EMBL:AE013599
            GO:GO:0005524 GO:GO:0005737 GO:GO:0007088 GO:GO:0009411
            GO:GO:0003677 GO:GO:0006367 GO:GO:0006289 GO:GO:0051983
            GO:GO:0005675 GO:GO:0005703 GO:GO:0010972 GO:GO:0005705
            TIGRFAMs:TIGR00604 KO:K10844 OMA:KDVDGKC GO:GO:0043141
            GeneTree:ENSGT00550000075092 GO:GO:0000439 FlyBase:FBgn0261850
            RefSeq:NP_726036.2 UniGene:Dm.718 ProteinModelPortal:Q7KVP9
            STRING:Q7KVP9 PRIDE:Q7KVP9 EnsemblMetazoa:FBtr0071576 GeneID:37414
            KEGG:dme:Dmel_CG9433 UCSC:CG9433-RA CTD:37414 InParanoid:Q7KVP9
            OrthoDB:EOG4FTTFK PhylomeDB:Q7KVP9 GenomeRNAi:37414 NextBio:803510
            ArrayExpress:Q7KVP9 Bgee:Q7KVP9 Uniprot:Q7KVP9
        Length = 769

 Score = 823 (294.8 bits), Expect = 6.3e-144, Sum P(3) = 6.3e-144
 Identities = 153/244 (62%), Positives = 194/244 (79%)

Query:     1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
             VSKER+GK VDG+C+ LT+S +R+RH+     P+C ++E F   G+E+ L  GVYSI  L
Sbjct:   121 VSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDL 180

Query:    61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
             KE GR    CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct:   181 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 240

Query:   121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
             NVC+DS+SV+INRRT+E++   +  L   +++++E D+ +L EEY R+V+GL+DA   R+
Sbjct:   241 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 300

Query:   181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
             TD++LANPVLP+++L EVVPGNIR A+HF+ FL+RFIEY+KTRLRV  VVQESPA FLKD
Sbjct:   301 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 360

Query:   241 ISSK 244
             ISSK
Sbjct:   361 ISSK 364

 Score = 654 (235.3 bits), Expect = 8.5e-126, Sum P(3) = 8.5e-126
 Identities = 126/182 (69%), Positives = 152/182 (83%)

Query:   240 DISSKPAPSMISEAYRYI-FSTE--EHLKTRLRVQQVVQESPATFLKDISSKVCIERKPL 296
             D+ ++  P  I  A  ++ F     E++KTRLRV  VVQESPA FLKDISSK+CIERKPL
Sbjct:   313 DVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKDISSKICIERKPL 372

Query:   297 RFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPV 356
             RFCAERL+SLLRTLEI++LT++ +L +ITH ATLVS+YTKGF II+EPF DK PTV NP+
Sbjct:   373 RFCAERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPI 432

Query:   357 LYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLP 416
             L+F CLDSS+A+ PVF RFQTVVITSGTLSP+DMYPKIL+F PV+M SF+MTLARPCLLP
Sbjct:   433 LHFSCLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLP 492

Query:   417 MV 418
             M+
Sbjct:   493 MI 494

 Score = 624 (224.7 bits), Expect = 2.8e-104, Sum P(2) = 2.8e-104
 Identities = 114/195 (58%), Positives = 151/195 (77%)

Query:   656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
             VSKER+GK VDG+C+ LT+S +R+RH+     P+C ++E F   G+E+ L  GVYSI  L
Sbjct:   121 VSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDL 180

Query:   716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
             KE GR    CPYFLAR AI HA IVVYSYHYLLDPKIA VVSKE++R S VVFDEAHNID
Sbjct:   181 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 240

Query:   776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
             NVC+DS+SV+INRRT+E++   +  L   +++++E D+ +L EEY R+V+GL+DA   R+
Sbjct:   241 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 300

Query:   836 TDVVLANPVLPDEIL 850
             TD++LANPVLP+++L
Sbjct:   301 TDMILANPVLPNDVL 315

 Score = 436 (158.5 bits), Expect = 2.8e-104, Sum P(2) = 2.8e-104
 Identities = 86/120 (71%), Positives = 96/120 (80%)

Query:   424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             M L +D L V+FPYEYIYPEQYAYM+ELK++LDAKGHCLLEMPSGTGKT +LLSLIVAYM
Sbjct:     1 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60

Query:   484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
               HP  V KL+YCSRTVPEIEKV+ EL  L  YY +H       TGLVLSSRKN+CIH E
Sbjct:    61 VEHPETVRKLIYCSRTVPEIEKVIAELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPE 120

 Score = 327 (120.2 bits), Expect = 6.3e-144, Sum P(3) = 6.3e-144
 Identities = 69/111 (62%), Positives = 84/111 (75%)

Query:   821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
             ARL + LRD    RE D +  + +          L+GKTDYGIMIFADKRF+R DKRS+L
Sbjct:   635 ARL-DYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRHDKRSRL 693

Query:   876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
             PKWIQE+L D+  NLSTEEAVQL++RWLR+MAQPFTRED LG++LL+L QL
Sbjct:   694 PKWIQEHLVDSFCNLSTEEAVQLARRWLRRMAQPFTREDQLGISLLTLAQL 744

 Score = 293 (108.2 bits), Expect = 6.3e-144, Sum P(3) = 6.3e-144
 Identities = 57/86 (66%), Positives = 69/86 (80%)

Query:   564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
             C++P  +V      + + S FETR+D +VIRNYGQLLV++A  VPDG+VCFFTSYLYLES
Sbjct:   489 CLLPM-IVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLES 547

Query:   624 VVASWYDQGIIDNLQKRKLLFIETQD 649
             VVASWYDQGI+D L + KLLFIETQD
Sbjct:   548 VVASWYDQGIVDTLLRYKLLFIETQD 573

 Score = 192 (72.6 bits), Expect = 2.7e-133, Sum P(3) = 2.7e-133
 Identities = 37/65 (56%), Positives = 48/65 (73%)

Query:   529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRD 588
             +V      + I S+FETR+D +VIRNYGQLLV++A  VPDG+VCFFTSYLYLESV  +  
Sbjct:   494 IVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLESVVASWY 553

Query:   589 DISVI 593
             D  ++
Sbjct:   554 DQGIV 558


>UNIPROTKB|P18074 [details] [associations]
            symbol:ERCC2 "TFIIH basal transcription factor complex
            helicase XPD subunit" species:9606 "Homo sapiens" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0019048 "virus-host interaction" evidence=IEA] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
            cluster binding" evidence=IEA] [GO:0021510 "spinal cord
            development" evidence=IEA] [GO:0030198 "extracellular matrix
            organization" evidence=IEA] [GO:0030282 "bone mineralization"
            evidence=IEA] [GO:0032289 "central nervous system myelin formation"
            evidence=IEA] [GO:0035264 "multicellular organism growth"
            evidence=IEA] [GO:0040016 "embryonic cleavage" evidence=IEA]
            [GO:0043066 "negative regulation of apoptotic process"
            evidence=IEA] [GO:0043249 "erythrocyte maturation" evidence=IEA]
            [GO:0043388 "positive regulation of DNA binding" evidence=IEA]
            [GO:0043588 "skin development" evidence=IEA] [GO:0048820 "hair
            follicle maturation" evidence=IEA] [GO:0060218 "hematopoietic stem
            cell differentiation" evidence=IEA] [GO:0000441 "SSL2-core TFIIH
            complex" evidence=IEA] [GO:0001666 "response to hypoxia"
            evidence=IEA] [GO:0001701 "in utero embryonic development"
            evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
            [GO:0007568 "aging" evidence=IEA] [GO:0008283 "cell proliferation"
            evidence=IEA] [GO:0009791 "post-embryonic development"
            evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
            evidence=IDA;TAS] [GO:0006289 "nucleotide-excision repair"
            evidence=IGI;NAS;TAS] [GO:0047485 "protein N-terminus binding"
            evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006917 "induction of apoptosis" evidence=IMP] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IDA;TAS]
            [GO:0005675 "holo TFIIH complex" evidence=IDA;TAS] [GO:0033683
            "nucleotide-excision repair, DNA incision" evidence=IMP]
            [GO:0004672 "protein kinase activity" evidence=IDA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IDA] [GO:0043139 "5'-3' DNA helicase activity"
            evidence=IDA] [GO:0006283 "transcription-coupled
            nucleotide-excision repair" evidence=IDA;TAS] [GO:0008022 "protein
            C-terminus binding" evidence=IPI] [GO:0019907 "cyclin-dependent
            protein kinase activating kinase holoenzyme complex" evidence=IDA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IDA] [GO:0035315 "hair cell differentiation" evidence=IMP]
            [GO:0000075 "cell cycle checkpoint" evidence=IMP] [GO:0006979
            "response to oxidative stress" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007059
            "chromosome segregation" evidence=IMP] [GO:0071817 "MMXD complex"
            evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0008353 "RNA
            polymerase II carboxy-terminal domain kinase activity"
            evidence=IDA] [GO:0009650 "UV protection" evidence=IGI] [GO:0000718
            "nucleotide-excision repair, DNA damage removal" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
            evidence=TAS] [GO:0006360 "transcription from RNA polymerase I
            promoter" evidence=TAS] [GO:0006361 "transcription initiation from
            RNA polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
            elongation from RNA polymerase I promoter" evidence=TAS]
            [GO:0006363 "termination of RNA polymerase I transcription"
            evidence=TAS] [GO:0006367 "transcription initiation from RNA
            polymerase II promoter" evidence=TAS] [GO:0006368 "transcription
            elongation from RNA polymerase II promoter" evidence=TAS]
            [GO:0006370 "7-methylguanosine mRNA capping" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
            reproduction" evidence=TAS] [GO:0050434 "positive regulation of
            viral transcription" evidence=TAS] [GO:0006468 "protein
            phosphorylation" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
            InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
            InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
            PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
            SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737
            Reactome:REACT_116125 GO:GO:0006915 GO:GO:0019048 GO:GO:0043066
            GO:GO:0043588 GO:GO:0007059 GO:GO:0016032 GO:GO:0006979
            GO:GO:0006917 GO:GO:0046872 GO:GO:0003677 GO:GO:0008283
            GO:GO:0007568 GO:GO:0001701 GO:GO:0001666 Reactome:REACT_1675
            GO:GO:0045944 GO:GO:0030198 GO:GO:0006468 EMBL:CH471126
            GO:GO:0040016 GO:GO:0051539 GO:GO:0009791 GO:GO:0060218
            GO:GO:0004003 GO:GO:0035264 GO:GO:0006368 GO:GO:0071817
            GO:GO:0021510 GO:GO:0030282 GO:GO:0006367 GO:GO:0000075
            Reactome:REACT_1788 GO:GO:0043388 GO:GO:0009650 GO:GO:0005675
            GO:GO:0006370 GO:GO:0000718 GO:GO:0050434 GO:GO:0006363
            GO:GO:0006362 GO:GO:0006361 GO:GO:0006283 GO:GO:0008094
            eggNOG:COG1199 TIGRFAMs:TIGR00604 GO:GO:0035315 GO:GO:0043139
            GO:GO:0043249 Orphanet:1466 HOGENOM:HOG000205390 KO:K10844
            OMA:KDVDGKC CTD:2068 HOVERGEN:HBG051498 GO:GO:0033683 EMBL:X52221
            EMBL:X52222 EMBL:L47234 EMBL:AY092780 EMBL:BT006883 EMBL:BC108255
            EMBL:BC110523 IPI:IPI00029728 IPI:IPI00984321 PIR:S10888
            RefSeq:NP_000391.1 RefSeq:NP_001124339.1 UniGene:Hs.487294
            ProteinModelPortal:P18074 DIP:DIP-644N STRING:P18074
            PhosphoSite:P18074 DMDM:119540 PaxDb:P18074 PRIDE:P18074 DNASU:2068
            Ensembl:ENST00000391940 Ensembl:ENST00000391942
            Ensembl:ENST00000391945 GeneID:2068 KEGG:hsa:2068 UCSC:uc002pbj.2
            GeneCards:GC19M045854 HGNC:HGNC:3434 HPA:CAB005375 MIM:126340
            MIM:278730 MIM:601675 MIM:610756 neXtProt:NX_P18074 Orphanet:231256
            Orphanet:453 Orphanet:670 Orphanet:276258 Orphanet:220295
            PharmGKB:PA27848 InParanoid:P18074 OrthoDB:EOG4BVRT2
            PhylomeDB:P18074 ChiTaRS:ERCC2 GenomeRNAi:2068 NextBio:8409
            ArrayExpress:P18074 Bgee:P18074 CleanEx:HS_ERCC2
            Genevestigator:P18074 GermOnline:ENSG00000104884 GO:GO:0000441
            GO:GO:0032289 GO:GO:0048820 Uniprot:P18074
        Length = 760

 Score = 841 (301.1 bits), Expect = 3.5e-141, Sum P(3) = 3.5e-141
 Identities = 170/322 (52%), Positives = 223/322 (69%)

Query:     1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
             V+  R GK VDG+CHSLT+S VR +++   ++P C FYE+FDA GRE PL  G+Y++  L
Sbjct:   121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180

Query:    61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
             K +GR  G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct:   181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240

Query:   121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
             NVC+DS+SV + RRT+++  GN++TL+ T+  +KE D  +LR+EY RLVEGLR+A +ARE
Sbjct:   241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300

Query:   181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
             TD  LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP  FL  
Sbjct:   301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360

Query:   241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
             ++ +    +  +  R+       L   L +  +   SP T L + ++ V    K      
Sbjct:   361 LAQRVC--IQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIII 418

Query:   301 ERLASLLRTLEITN-LTDFSSL 321
             E      RT  I N +  FS +
Sbjct:   419 EPFDD--RTPTIANPILHFSCM 438

 Score = 662 (238.1 bits), Expect = 8.1e-108, Sum P(2) = 8.1e-108
 Identities = 123/196 (62%), Positives = 158/196 (80%)

Query:   656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
             V+  R GK VDG+CHSLT+S VR +++   ++P C FYE+FDA GRE PL  G+Y++  L
Sbjct:   121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180

Query:   716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
             K +GR  G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct:   181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240

Query:   776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
             NVC+DS+SV + RRT+++  GN++TL+ T+  +KE D  +LR+EY RLVEGLR+A +ARE
Sbjct:   241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300

Query:   836 TDVVLANPVLPDEILQ 851
             TD  LANPVLPDE+LQ
Sbjct:   301 TDAHLANPVLPDEVLQ 316

 Score = 579 (208.9 bits), Expect = 1.1e-111, Sum P(3) = 1.1e-111
 Identities = 115/209 (55%), Positives = 150/209 (71%)

Query:   214 KRFIEYLKTRLRVQQVVQESPATFLKD-ISSKPAPSMISEAYRYI-FSTE--EHLKTRLR 269
             +R +E L+     ++         L D +  +  P  I  A  ++ F     E++K RLR
Sbjct:   286 RRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLR 345

Query:   270 VQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLAT 329
             VQ VVQESP  FL  ++ +VCI+RKPLRFCAERL SLL TLEIT+L DFS L ++ + AT
Sbjct:   346 VQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFAT 405

Query:   330 LVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLD 389
             LVS+Y KGF II+EPF D+ PT+ NP+L+F C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD
Sbjct:   406 LVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLD 465

Query:   390 MYPKILNFQPVIMHSFSMTLARPCLLPMV 418
             +YPKIL+F PV M +F+MTLAR CL PM+
Sbjct:   466 IYPKILDFHPVTMATFTMTLARVCLCPMI 494

 Score = 424 (154.3 bits), Expect = 8.1e-108, Sum P(2) = 8.1e-108
 Identities = 81/120 (67%), Positives = 99/120 (82%)

Query:   424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             M L +D L V+FPY+YIYPEQ++YM ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY 
Sbjct:     1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60

Query:   484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN-EEINMTGLVLSSRKNLCIHSE 542
              A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K   E++   GL LSSRKNLCIH E
Sbjct:    61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120

 Score = 294 (108.6 bits), Expect = 3.5e-141, Sum P(3) = 3.5e-141
 Identities = 63/111 (56%), Positives = 80/111 (72%)

Query:   821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
             ARL E LRD    RE D +  + +          ++GKTDYG+M+FADKRFAR DKR KL
Sbjct:   635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKL 693

Query:   876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
             P+WIQE+LTD   NL+ +E VQ++K +LRQMAQPF RED LG++LLSL+QL
Sbjct:   694 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHREDQLGLSLLSLEQL 744

 Score = 282 (104.3 bits), Expect = 3.5e-141, Sum P(3) = 3.5e-141
 Identities = 66/139 (47%), Positives = 93/139 (66%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             + S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct:   504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563

Query:   640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENIPVCDFYEKFDA 698
              KLLFIETQD  ++ SV+ E+  +  + GR   L S +   R K  E I   DF   +  
Sbjct:   564 NKLLFIETQDGAET-SVALEKYQEACENGRGAILLSVA---RGKVSEGI---DFVHHY-- 614

Query:   699 VGREAPL--APGVYSITKL 715
              GR   +   P VY+ +++
Sbjct:   615 -GRAVIMFGVPYVYTQSRI 632

 Score = 169 (64.5 bits), Expect = 2.8e-129, Sum P(3) = 2.8e-129
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query:   537 LCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRN 595
             + I S+FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES   +  +  ++ N
Sbjct:   502 VAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILEN 560

 Score = 38 (18.4 bits), Expect = 6.5e-62, Sum P(3) = 6.5e-62
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query:   631 QGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP 688
             QG ++ LQK  L   ET +    R   + R  ++V+G     +++   D H A   +P
Sbjct:   260 QGNLETLQKTVLRIKETDE---QRLRDEYR--RLVEG-LREASAARETDAHLANPVLP 311


>RGD|1309109 [details] [associations]
            symbol:Ercc2 "excision repair cross-complementing rodent repair
            deficiency, complementation group 2" species:10116 "Rattus
            norvegicus" [GO:0000075 "cell cycle checkpoint" evidence=IEA;ISO]
            [GO:0000441 "SSL2-core TFIIH complex" evidence=IDA] [GO:0001666
            "response to hypoxia" evidence=IEP] [GO:0001701 "in utero embryonic
            development" evidence=IEA;ISO] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005675 "holo TFIIH complex" evidence=ISO] [GO:0005737
            "cytoplasm" evidence=IEA;ISO] [GO:0005819 "spindle" evidence=ISO]
            [GO:0006281 "DNA repair" evidence=ISO] [GO:0006283
            "transcription-coupled nucleotide-excision repair"
            evidence=IEA;ISO] [GO:0006289 "nucleotide-excision repair"
            evidence=ISO] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
            evidence=ISO] [GO:0006915 "apoptotic process" evidence=IEA;ISO]
            [GO:0006917 "induction of apoptosis" evidence=IEA;ISO] [GO:0006979
            "response to oxidative stress" evidence=IEA;ISO] [GO:0007059
            "chromosome segregation" evidence=IEA;ISO] [GO:0007568 "aging"
            evidence=IEA;ISO] [GO:0008022 "protein C-terminus binding"
            evidence=IEA;ISO] [GO:0008283 "cell proliferation"
            evidence=IEA;ISO] [GO:0008353 "RNA polymerase II carboxy-terminal
            domain kinase activity" evidence=IEA;ISO] [GO:0009411 "response to
            UV" evidence=ISO] [GO:0009650 "UV protection" evidence=IEA;ISO]
            [GO:0009791 "post-embryonic development" evidence=IEA;ISO]
            [GO:0019907 "cyclin-dependent protein kinase activating kinase
            holoenzyme complex" evidence=IEA;ISO] [GO:0021510 "spinal cord
            development" evidence=IEA;ISO] [GO:0022405 "hair cycle process"
            evidence=ISO] [GO:0030198 "extracellular matrix organization"
            evidence=IEA;ISO] [GO:0030282 "bone mineralization"
            evidence=IEA;ISO] [GO:0032289 "central nervous system myelin
            formation" evidence=IEA;ISO] [GO:0033683 "nucleotide-excision
            repair, DNA incision" evidence=IEA;ISO] [GO:0035264 "multicellular
            organism growth" evidence=IEA;ISO] [GO:0035315 "hair cell
            differentiation" evidence=IEA;ISO] [GO:0040016 "embryonic cleavage"
            evidence=IEA;ISO] [GO:0043066 "negative regulation of apoptotic
            process" evidence=IEA;ISO] [GO:0043139 "5'-3' DNA helicase
            activity" evidence=IEA;ISO] [GO:0043249 "erythrocyte maturation"
            evidence=IEA;ISO] [GO:0043388 "positive regulation of DNA binding"
            evidence=IEA;ISO] [GO:0043588 "skin development" evidence=IEA;ISO]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISO] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0047485
            "protein N-terminus binding" evidence=IEA;ISO] [GO:0048820 "hair
            follicle maturation" evidence=IEA;ISO] [GO:0060218 "hematopoietic
            stem cell differentiation" evidence=IEA;ISO] [GO:0071817 "MMXD
            complex" evidence=IEA;ISO] [GO:0004672 "protein kinase activity"
            evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
            evidence=ISO] InterPro:IPR001945 InterPro:IPR002464
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
            Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 RGD:1309109 INTERPRO:IPR013020
            GO:GO:0005524 GO:GO:0005737 GO:GO:0006915 GO:GO:0043066
            GO:GO:0043588 GO:GO:0007059 GO:GO:0006979 GO:GO:0006917
            GO:GO:0003677 GO:GO:0008283 GO:GO:0007568 GO:GO:0001701
            GO:GO:0001666 GO:GO:0045944 GO:GO:0030198 GO:GO:0040016
            GO:GO:0009791 GO:GO:0060218 GO:GO:0004003 GO:GO:0035264
            GO:GO:0071817 GO:GO:0021510 GO:GO:0030282 GO:GO:0000075
            EMBL:CH473979 GO:GO:0043388 GO:GO:0008353 GO:GO:0009650
            GO:GO:0019907 GO:GO:0006283 TIGRFAMs:TIGR00604 GO:GO:0035315
            GO:GO:0043139 GO:GO:0043249 KO:K10844 CTD:2068 GO:GO:0033683
            OrthoDB:EOG4BVRT2 GO:GO:0000441 GO:GO:0032289 GO:GO:0048820
            GeneTree:ENSGT00550000075092 IPI:IPI00367025 RefSeq:NP_001166280.1
            UniGene:Rn.41871 Ensembl:ENSRNOT00000024246 GeneID:308415
            KEGG:rno:308415 NextBio:658821 Uniprot:D3ZEG9
        Length = 760

 Score = 828 (296.5 bits), Expect = 3.1e-140, Sum P(3) = 3.1e-140
 Identities = 167/322 (51%), Positives = 221/322 (68%)

Query:     1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
             V+  R GK VDG+CHSLT+S VR +++   ++P C FYE+FD  GR+ PL  G+Y++  L
Sbjct:   121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDTHGRQVPLPAGIYNLDDL 180

Query:    61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
             K +G+  G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct:   181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240

Query:   121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
             NVC+DS+SV + RRT+++   N+ TL+ T+  +KE D  +LR+EY RLVEGLR+A +ARE
Sbjct:   241 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300

Query:   181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
             TD  LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP  FL  
Sbjct:   301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360

Query:   241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
             ++ +    +  +  R+       L   L +  +   SP T L + ++ V    K      
Sbjct:   361 LAQRVC--IQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIII 418

Query:   301 ERLASLLRTLEITN-LTDFSSL 321
             E      RT  ITN +  FS +
Sbjct:   419 EPFDD--RTPTITNPILHFSCM 438

 Score = 646 (232.5 bits), Expect = 1.3e-135, Sum P(3) = 1.3e-135
 Identities = 124/225 (55%), Positives = 165/225 (73%)

Query:   627 SWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGEN 686
             S+Y+Q   + L    L     ++      V+  R GK VDG+CHSLT+S VR +++   +
Sbjct:    92 SFYEQQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQQDAS 151

Query:   687 IPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
             +P C FYE+FD  GR+ PL  G+Y++  LK +G+  G CPYFLAR +I+HA +VVYSYHY
Sbjct:   152 LPHCRFYEEFDTHGRQVPLPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVYSYHY 211

Query:   747 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLK 806
             LLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++   N+ TL+ T+ 
Sbjct:   212 LLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSNLDTLQKTVL 271

Query:   807 EMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
              +KE D  +LR+EY RLVEGLR+A +ARETD  LANPVLPDE+LQ
Sbjct:   272 RIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 316

 Score = 574 (207.1 bits), Expect = 1.5e-111, Sum P(3) = 1.5e-111
 Identities = 114/209 (54%), Positives = 149/209 (71%)

Query:   214 KRFIEYLKTRLRVQQVVQESPATFLKD-ISSKPAPSMISEAYRYI-FSTE--EHLKTRLR 269
             +R +E L+     ++         L D +  +  P  I  A  ++ F     E++K RLR
Sbjct:   286 RRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLR 345

Query:   270 VQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLAT 329
             VQ VVQESP  FL  ++ +VCI+RKPLRFCAERL SLL TLEI +L DFS L ++ + AT
Sbjct:   346 VQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFAT 405

Query:   330 LVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLD 389
             LVS+Y KGF II+EPF D+ PT+ NP+L+F C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD
Sbjct:   406 LVSTYAKGFTIIIEPFDDRTPTITNPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLD 465

Query:   390 MYPKILNFQPVIMHSFSMTLARPCLLPMV 418
             +YPKIL+F PV M +F+MTLAR CL PM+
Sbjct:   466 IYPKILDFHPVTMATFTMTLARVCLCPMI 494

 Score = 426 (155.0 bits), Expect = 1.3e-135, Sum P(3) = 1.3e-135
 Identities = 81/120 (67%), Positives = 99/120 (82%)

Query:   424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             M L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LIVAY 
Sbjct:     1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60

Query:   484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN-EEINMTGLVLSSRKNLCIHSE 542
              A+PL+VTKL+YCSRTVPEIEKV+EEL +L  +Y +   E++   GL LSSRKNLCIH E
Sbjct:    61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120

 Score = 298 (110.0 bits), Expect = 3.1e-140, Sum P(3) = 3.1e-140
 Identities = 63/111 (56%), Positives = 82/111 (73%)

Query:   821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
             ARL E LRD    RE D +  + +          ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct:   635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 693

Query:   876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
             P+WIQE+LTD+  NL+ +E VQ++K +LRQMAQPF RED LG++LLSL+QL
Sbjct:   694 PRWIQEHLTDSNLNLTVDEGVQVAKYFLRQMAQPFHREDQLGLSLLSLEQL 744

 Score = 282 (104.3 bits), Expect = 3.1e-140, Sum P(3) = 3.1e-140
 Identities = 66/139 (47%), Positives = 93/139 (66%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             + S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct:   504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563

Query:   640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENIPVCDFYEKFDA 698
              KLLFIETQD  ++ SV+ E+  +  + GR   L S +   R K  E I   DF   +  
Sbjct:   564 NKLLFIETQDGAET-SVALEKYQEACENGRGAILLSVA---RGKVSEGI---DFVHHY-- 614

Query:   699 VGREAPL--APGVYSITKL 715
              GR   +   P VY+ +++
Sbjct:   615 -GRAVIMFGVPYVYTQSRI 632

 Score = 169 (64.5 bits), Expect = 2.4e-128, Sum P(3) = 2.4e-128
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query:   537 LCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRN 595
             + I S+FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES   +  +  ++ N
Sbjct:   502 VAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILEN 560


>UNIPROTKB|Q60452 [details] [associations]
            symbol:ERCC2 "TFIIH basal transcription factor complex
            helicase XPD subunit" species:10029 "Cricetulus griseus"
            [GO:0000075 "cell cycle checkpoint" evidence=ISS] [GO:0005675 "holo
            TFIIH complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0005819 "spindle" evidence=ISS] [GO:0006283
            "transcription-coupled nucleotide-excision repair" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0006468 "protein phosphorylation" evidence=ISS]
            [GO:0006917 "induction of apoptosis" evidence=ISS] [GO:0006979
            "response to oxidative stress" evidence=ISS] [GO:0007059
            "chromosome segregation" evidence=ISS] [GO:0008022 "protein
            C-terminus binding" evidence=ISS] [GO:0033683 "nucleotide-excision
            repair, DNA incision" evidence=ISS] [GO:0035315 "hair cell
            differentiation" evidence=ISS] [GO:0043139 "5'-3' DNA helicase
            activity" evidence=ISS] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=ISS] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0047485 "protein N-terminus binding"
            evidence=ISS] [GO:0071817 "MMXD complex" evidence=ISS] [GO:0019907
            "cyclin-dependent protein kinase activating kinase holoenzyme
            complex" evidence=ISS] [GO:0004672 "protein kinase activity"
            evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
            evidence=ISS] [GO:0008353 "RNA polymerase II carboxy-terminal
            domain kinase activity" evidence=ISS] InterPro:IPR001945
            InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
            PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
            INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737 GO:GO:0007059
            GO:GO:0006979 GO:GO:0006917 GO:GO:0046872 GO:GO:0003677
            GO:GO:0045944 GO:GO:0006468 GO:GO:0051539 GO:GO:0006366
            GO:GO:0004003 GO:GO:0071817 GO:GO:0008022 GO:GO:0047485
            GO:GO:0000075 GO:GO:0005675 GO:GO:0006283 TIGRFAMs:TIGR00604
            GO:GO:0035315 GO:GO:0043139 CTD:2068 HOVERGEN:HBG051498
            GO:GO:0033683 EMBL:U04968 EMBL:U04967 PIR:A55732
            RefSeq:NP_001231320.1 GeneID:100689272 Uniprot:Q60452
        Length = 760

 Score = 827 (296.2 bits), Expect = 3.9e-140, Sum P(3) = 3.9e-140
 Identities = 167/322 (51%), Positives = 221/322 (68%)

Query:     1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
             V+  R GK VDG+CHSLT+S VR +++   ++P C FYE+FDA GR+ PL  G+Y++  L
Sbjct:   121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDAHGRQVPLPAGIYNLDDL 180

Query:    61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
             K +G+  G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct:   181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240

Query:   121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
             NVC+DS+SV + RRT+++   N+ TL+ T+  +KE D  +LR+EY RLVEGLR+A +ARE
Sbjct:   241 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300

Query:   181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
             TD  LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP  FL  
Sbjct:   301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360

Query:   241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
             ++ +    +  +  R+       L   L +  +   SP T L + ++ V    K      
Sbjct:   361 LAQRVC--IQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIII 418

Query:   301 ERLASLLRTLEITN-LTDFSSL 321
             E      RT  I N +  FS +
Sbjct:   419 EPFDD--RTPTIANPILHFSCM 438

 Score = 650 (233.9 bits), Expect = 7.2e-136, Sum P(3) = 7.2e-136
 Identities = 125/225 (55%), Positives = 166/225 (73%)

Query:   627 SWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGEN 686
             S+Y+Q   + L    L     ++      V+  R GK VDG+CHSLT+S VR +++   +
Sbjct:    92 SFYEQQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQQDAS 151

Query:   687 IPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
             +P C FYE+FDA GR+ PL  G+Y++  LK +G+  G CPYFLAR +I+HA +VVYSYHY
Sbjct:   152 LPHCRFYEEFDAHGRQVPLPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVYSYHY 211

Query:   747 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLK 806
             LLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++   N+ TL+ T+ 
Sbjct:   212 LLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSNLDTLQKTVL 271

Query:   807 EMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
              +KE D  +LR+EY RLVEGLR+A +ARETD  LANPVLPDE+LQ
Sbjct:   272 RIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 316

 Score = 574 (207.1 bits), Expect = 1.5e-111, Sum P(3) = 1.5e-111
 Identities = 114/209 (54%), Positives = 149/209 (71%)

Query:   214 KRFIEYLKTRLRVQQVVQESPATFLKD-ISSKPAPSMISEAYRYI-FSTE--EHLKTRLR 269
             +R +E L+     ++         L D +  +  P  I  A  ++ F     E++K RLR
Sbjct:   286 RRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLR 345

Query:   270 VQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLAT 329
             VQ VVQESP  FL  ++ +VCI+RKPLRFCAERL SLL TLEI +L DFS L ++ + AT
Sbjct:   346 VQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFAT 405

Query:   330 LVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLD 389
             LVS+Y KGF II+EPF D+ PT+ NP+L+F C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD
Sbjct:   406 LVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLD 465

Query:   390 MYPKILNFQPVIMHSFSMTLARPCLLPMV 418
             +YPKIL+F PV M +F+MTLAR CL PM+
Sbjct:   466 IYPKILDFHPVTMATFTMTLARVCLCPMI 494

 Score = 423 (154.0 bits), Expect = 7.2e-136, Sum P(3) = 7.2e-136
 Identities = 81/120 (67%), Positives = 98/120 (81%)

Query:   424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             M L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LIVAY 
Sbjct:     1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60

Query:   484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN-EEINMTGLVLSSRKNLCIHSE 542
              A PL+VTKL+YCSRTVPEIEKV+EEL +L  +Y +   E++   GL LSSRKNLCIH E
Sbjct:    61 RAFPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120

 Score = 298 (110.0 bits), Expect = 3.9e-140, Sum P(3) = 3.9e-140
 Identities = 63/111 (56%), Positives = 82/111 (73%)

Query:   821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
             ARL E LRD    RE D +  + +          ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct:   635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 693

Query:   876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
             P+WIQE+LTD+  NL+ +E VQ++K +LRQMAQPF RED LG++LLSL+QL
Sbjct:   694 PRWIQEHLTDSNLNLTVDEGVQVAKYFLRQMAQPFHREDQLGLSLLSLEQL 744

 Score = 282 (104.3 bits), Expect = 3.9e-140, Sum P(3) = 3.9e-140
 Identities = 66/139 (47%), Positives = 93/139 (66%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             + S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct:   504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563

Query:   640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENIPVCDFYEKFDA 698
              KLLFIETQD  ++ SV+ E+  +  + GR   L S +   R K  E I   DF   +  
Sbjct:   564 NKLLFIETQDGAET-SVALEKYQEACENGRGAILLSVA---RGKVSEGI---DFVHHY-- 614

Query:   699 VGREAPL--APGVYSITKL 715
              GR   +   P VY+ +++
Sbjct:   615 -GRAVIMFGVPYVYTQSRI 632

 Score = 169 (64.5 bits), Expect = 3.1e-128, Sum P(3) = 3.1e-128
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query:   537 LCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRN 595
             + I S+FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES   +  +  ++ N
Sbjct:   502 VAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILEN 560


>UNIPROTKB|A6QLJ0 [details] [associations]
            symbol:ERCC2 "TFIIH basal transcription factor complex
            helicase XPD subunit" species:9913 "Bos taurus" [GO:0006468
            "protein phosphorylation" evidence=ISS] [GO:0008353 "RNA polymerase
            II carboxy-terminal domain kinase activity" evidence=ISS]
            [GO:0071817 "MMXD complex" evidence=ISS] [GO:0005819 "spindle"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0007059 "chromosome segregation"
            evidence=ISS] [GO:0005675 "holo TFIIH complex" evidence=ISS]
            [GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
            [GO:0035315 "hair cell differentiation" evidence=ISS] [GO:0004672
            "protein kinase activity" evidence=ISS] [GO:0006366 "transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0043139 "5'-3' DNA helicase activity"
            evidence=ISS] [GO:0033683 "nucleotide-excision repair, DNA
            incision" evidence=ISS] [GO:0019907 "cyclin-dependent protein
            kinase activating kinase holoenzyme complex" evidence=ISS]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0008022 "protein C-terminus binding"
            evidence=ISS] [GO:0006979 "response to oxidative stress"
            evidence=ISS] [GO:0000075 "cell cycle checkpoint" evidence=ISS]
            [GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
            [GO:0046872 "metal ion binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
            InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
            InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
            PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
            SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737
            GO:GO:0007059 GO:GO:0006979 GO:GO:0046872 GO:GO:0003677
            GO:GO:0045944 GO:GO:0006468 GO:GO:0051539 GO:GO:0006366
            GO:GO:0004003 GO:GO:0071817 GO:GO:0008022 GO:GO:0000075
            GO:GO:0005675 eggNOG:COG1199 TIGRFAMs:TIGR00604 GO:GO:0035315
            GO:GO:0043139 KO:K10844 EMBL:BC147982 IPI:IPI00866827
            RefSeq:NP_001096787.1 UniGene:Bt.4215 STRING:A6QLJ0 PRIDE:A6QLJ0
            GeneID:100125238 KEGG:bta:100125238 CTD:2068 HOVERGEN:HBG051498
            NextBio:20788783 GO:GO:0033683 Uniprot:A6QLJ0
        Length = 760

 Score = 829 (296.9 bits), Expect = 5.0e-140, Sum P(3) = 5.0e-140
 Identities = 167/322 (51%), Positives = 221/322 (68%)

Query:     1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
             V+  R GK VDG+CHSLT+S VR +++   ++P C FYE+FD  GR+ PL  G+Y++  L
Sbjct:   121 VTPLRFGKDVDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDL 180

Query:    61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
             K +GR  G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct:   181 KAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240

Query:   121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
             NVC+DS+SV + RRT+++   N++TL+ T+  +KE D  +LREEY RLVEGLR+A +ARE
Sbjct:   241 NVCIDSMSVNLTRRTLDRCQANLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARE 300

Query:   181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
             TD  LANPVLPDE+L+E VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP  FL  
Sbjct:   301 TDAHLANPVLPDEVLKEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360

Query:   241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
             ++ +    +  +  R+       L   L +  +   SP T L + ++ V    K      
Sbjct:   361 LAQRVC--IQRKPLRFCAERLRSLLYTLEISDLTDFSPLTLLANFATLVSTYAKGFTIII 418

Query:   301 ERLASLLRTLEITN-LTDFSSL 321
             E      RT  I N +  FS +
Sbjct:   419 EPFDD--RTPTIANPILHFSCM 438

 Score = 649 (233.5 bits), Expect = 2.1e-106, Sum P(2) = 2.1e-106
 Identities = 120/196 (61%), Positives = 156/196 (79%)

Query:   656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
             V+  R GK VDG+CHSLT+S VR +++   ++P C FYE+FD  GR+ PL  G+Y++  L
Sbjct:   121 VTPLRFGKDVDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDL 180

Query:   716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
             K +GR  G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct:   181 KAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240

Query:   776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
             NVC+DS+SV + RRT+++   N++TL+ T+  +KE D  +LREEY RLVEGLR+A +ARE
Sbjct:   241 NVCIDSMSVNLTRRTLDRCQANLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARE 300

Query:   836 TDVVLANPVLPDEILQ 851
             TD  LANPVLPDE+L+
Sbjct:   301 TDAHLANPVLPDEVLK 316

 Score = 578 (208.5 bits), Expect = 1.1e-111, Sum P(3) = 1.1e-111
 Identities = 117/209 (55%), Positives = 151/209 (72%)

Query:   214 KRFIEYLKTRLRVQQVVQESPATFLKDISSKPA-PSMISEAYRYI-FSTE--EHLKTRLR 269
             +R +E L+     ++         L D   K A P  I  A  ++ F     E++K RLR
Sbjct:   286 RRLVEGLREASAARETDAHLANPVLPDEVLKEAVPGSIRTAEHFLGFLRRLLEYVKWRLR 345

Query:   270 VQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLAT 329
             VQ VVQESP  FL  ++ +VCI+RKPLRFCAERL SLL TLEI++LTDFS L ++ + AT
Sbjct:   346 VQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLYTLEISDLTDFSPLTLLANFAT 405

Query:   330 LVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLD 389
             LVS+Y KGF II+EPF D+ PT+ NP+L+F C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD
Sbjct:   406 LVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLD 465

Query:   390 MYPKILNFQPVIMHSFSMTLARPCLLPMV 418
             +YPKIL+F PV M +F+MTLAR CL PM+
Sbjct:   466 IYPKILDFHPVTMATFTMTLARVCLCPMI 494

 Score = 427 (155.4 bits), Expect = 2.1e-106, Sum P(2) = 2.1e-106
 Identities = 81/120 (67%), Positives = 99/120 (82%)

Query:   424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             M L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY 
Sbjct:     1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60

Query:   484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN-EEINMTGLVLSSRKNLCIHSE 542
              A+PL+VTKL+YCSRTVPEIEKV+EEL +L  +Y K   E++   GL LSSRKNLCIH E
Sbjct:    61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPE 120

 Score = 295 (108.9 bits), Expect = 5.0e-140, Sum P(3) = 5.0e-140
 Identities = 63/111 (56%), Positives = 81/111 (72%)

Query:   821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
             ARL E LRD    RE D +  + +          ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct:   635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 693

Query:   876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
             P+WIQE+LTD   NL+ +E VQ++K +LRQMAQPF RED LG++LLSL+QL
Sbjct:   694 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHREDQLGLSLLSLEQL 744

 Score = 282 (104.3 bits), Expect = 5.0e-140, Sum P(3) = 5.0e-140
 Identities = 66/139 (47%), Positives = 93/139 (66%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             + S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct:   504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563

Query:   640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENIPVCDFYEKFDA 698
              KLLFIETQD  ++ SV+ E+  +  + GR   L S +   R K  E I   DF   +  
Sbjct:   564 NKLLFIETQDGAET-SVALEKYQEACENGRGAILLSVA---RGKVSEGI---DFVHHY-- 614

Query:   699 VGREAPL--APGVYSITKL 715
              GR   +   P VY+ +++
Sbjct:   615 -GRAVIMFGVPYVYTQSRI 632

 Score = 169 (64.5 bits), Expect = 4.0e-128, Sum P(3) = 4.0e-128
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query:   537 LCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRN 595
             + I S+FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES   +  +  ++ N
Sbjct:   502 VAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILEN 560


>UNIPROTKB|F1N2P3 [details] [associations]
            symbol:ERCC2 "TFIIH basal transcription factor complex
            helicase XPD subunit" species:9913 "Bos taurus" [GO:0071817 "MMXD
            complex" evidence=IEA] [GO:0060218 "hematopoietic stem cell
            differentiation" evidence=IEA] [GO:0048820 "hair follicle
            maturation" evidence=IEA] [GO:0047485 "protein N-terminus binding"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0043588 "skin
            development" evidence=IEA] [GO:0043388 "positive regulation of DNA
            binding" evidence=IEA] [GO:0043249 "erythrocyte maturation"
            evidence=IEA] [GO:0043139 "5'-3' DNA helicase activity"
            evidence=IEA] [GO:0043066 "negative regulation of apoptotic
            process" evidence=IEA] [GO:0040016 "embryonic cleavage"
            evidence=IEA] [GO:0035315 "hair cell differentiation" evidence=IEA]
            [GO:0035264 "multicellular organism growth" evidence=IEA]
            [GO:0033683 "nucleotide-excision repair, DNA incision"
            evidence=IEA] [GO:0032289 "central nervous system myelin formation"
            evidence=IEA] [GO:0030282 "bone mineralization" evidence=IEA]
            [GO:0030198 "extracellular matrix organization" evidence=IEA]
            [GO:0021510 "spinal cord development" evidence=IEA] [GO:0019907
            "cyclin-dependent protein kinase activating kinase holoenzyme
            complex" evidence=IEA] [GO:0009791 "post-embryonic development"
            evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0008353
            "RNA polymerase II carboxy-terminal domain kinase activity"
            evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
            [GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007568
            "aging" evidence=IEA] [GO:0007059 "chromosome segregation"
            evidence=IEA] [GO:0006979 "response to oxidative stress"
            evidence=IEA] [GO:0006917 "induction of apoptosis" evidence=IEA]
            [GO:0006915 "apoptotic process" evidence=IEA] [GO:0006283
            "transcription-coupled nucleotide-excision repair" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0001701 "in utero
            embryonic development" evidence=IEA] [GO:0000075 "cell cycle
            checkpoint" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001945
            InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
            PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
            INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737 GO:GO:0006915
            GO:GO:0043066 GO:GO:0043588 GO:GO:0007059 GO:GO:0006979
            GO:GO:0006917 GO:GO:0003677 GO:GO:0008283 GO:GO:0007568
            GO:GO:0001701 GO:GO:0045944 GO:GO:0030198 GO:GO:0040016
            GO:GO:0009791 GO:GO:0060218 GO:GO:0004003 GO:GO:0035264
            GO:GO:0071817 GO:GO:0021510 GO:GO:0030282 GO:GO:0000075
            GO:GO:0043388 GO:GO:0008353 GO:GO:0009650 GO:GO:0019907
            GO:GO:0006283 TIGRFAMs:TIGR00604 GO:GO:0035315 GO:GO:0043139
            GO:GO:0043249 OMA:KDVDGKC IPI:IPI00866827 GO:GO:0033683
            GO:GO:0032289 GO:GO:0048820 GeneTree:ENSGT00550000075092
            EMBL:DAAA02047375 Ensembl:ENSBTAT00000002680 Uniprot:F1N2P3
        Length = 759

 Score = 829 (296.9 bits), Expect = 5.0e-140, Sum P(3) = 5.0e-140
 Identities = 167/322 (51%), Positives = 221/322 (68%)

Query:     1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
             V+  R GK VDG+CHSLT+S VR +++   ++P C FYE+FD  GR+ PL  G+Y++  L
Sbjct:   120 VTPLRFGKDVDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDL 179

Query:    61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
             K +GR  G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct:   180 KAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 239

Query:   121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
             NVC+DS+SV + RRT+++   N++TL+ T+  +KE D  +LREEY RLVEGLR+A +ARE
Sbjct:   240 NVCIDSMSVNLTRRTLDRCQANLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARE 299

Query:   181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
             TD  LANPVLPDE+L+E VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP  FL  
Sbjct:   300 TDAHLANPVLPDEVLKEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 359

Query:   241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
             ++ +    +  +  R+       L   L +  +   SP T L + ++ V    K      
Sbjct:   360 LAQRVC--IQRKPLRFCAERLRSLLYTLEISDLTDFSPLTLLANFATLVSTYAKGFTIII 417

Query:   301 ERLASLLRTLEITN-LTDFSSL 321
             E      RT  I N +  FS +
Sbjct:   418 EPFDD--RTPTIANPILHFSCM 437

 Score = 649 (233.5 bits), Expect = 4.3e-106, Sum P(2) = 4.3e-106
 Identities = 120/196 (61%), Positives = 156/196 (79%)

Query:   656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
             V+  R GK VDG+CHSLT+S VR +++   ++P C FYE+FD  GR+ PL  G+Y++  L
Sbjct:   120 VTPLRFGKDVDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDL 179

Query:   716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
             K +GR  G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct:   180 KAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 239

Query:   776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
             NVC+DS+SV + RRT+++   N++TL+ T+  +KE D  +LREEY RLVEGLR+A +ARE
Sbjct:   240 NVCIDSMSVNLTRRTLDRCQANLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARE 299

Query:   836 TDVVLANPVLPDEILQ 851
             TD  LANPVLPDE+L+
Sbjct:   300 TDAHLANPVLPDEVLK 315

 Score = 578 (208.5 bits), Expect = 1.1e-111, Sum P(3) = 1.1e-111
 Identities = 117/209 (55%), Positives = 151/209 (72%)

Query:   214 KRFIEYLKTRLRVQQVVQESPATFLKDISSKPA-PSMISEAYRYI-FSTE--EHLKTRLR 269
             +R +E L+     ++         L D   K A P  I  A  ++ F     E++K RLR
Sbjct:   285 RRLVEGLREASAARETDAHLANPVLPDEVLKEAVPGSIRTAEHFLGFLRRLLEYVKWRLR 344

Query:   270 VQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLAT 329
             VQ VVQESP  FL  ++ +VCI+RKPLRFCAERL SLL TLEI++LTDFS L ++ + AT
Sbjct:   345 VQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLYTLEISDLTDFSPLTLLANFAT 404

Query:   330 LVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLD 389
             LVS+Y KGF II+EPF D+ PT+ NP+L+F C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD
Sbjct:   405 LVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLD 464

Query:   390 MYPKILNFQPVIMHSFSMTLARPCLLPMV 418
             +YPKIL+F PV M +F+MTLAR CL PM+
Sbjct:   465 IYPKILDFHPVTMATFTMTLARVCLCPMI 493

 Score = 424 (154.3 bits), Expect = 4.3e-106, Sum P(2) = 4.3e-106
 Identities = 80/118 (67%), Positives = 98/118 (83%)

Query:   426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
             L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY  A
Sbjct:     2 LNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRA 61

Query:   486 HPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN-EEINMTGLVLSSRKNLCIHSE 542
             +PL+VTKL+YCSRTVPEIEKV+EEL +L  +Y K   E++   GL LSSRKNLCIH E
Sbjct:    62 YPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPE 119

 Score = 295 (108.9 bits), Expect = 5.0e-140, Sum P(3) = 5.0e-140
 Identities = 63/111 (56%), Positives = 81/111 (72%)

Query:   821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
             ARL E LRD    RE D +  + +          ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct:   634 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 692

Query:   876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
             P+WIQE+LTD   NL+ +E VQ++K +LRQMAQPF RED LG++LLSL+QL
Sbjct:   693 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHREDQLGLSLLSLEQL 743

 Score = 282 (104.3 bits), Expect = 5.0e-140, Sum P(3) = 5.0e-140
 Identities = 66/139 (47%), Positives = 93/139 (66%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             + S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct:   503 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 562

Query:   640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENIPVCDFYEKFDA 698
              KLLFIETQD  ++ SV+ E+  +  + GR   L S +   R K  E I   DF   +  
Sbjct:   563 NKLLFIETQDGAET-SVALEKYQEACENGRGAILLSVA---RGKVSEGI---DFVHHY-- 613

Query:   699 VGREAPL--APGVYSITKL 715
              GR   +   P VY+ +++
Sbjct:   614 -GRAVIMFGVPYVYTQSRI 631

 Score = 169 (64.5 bits), Expect = 4.0e-128, Sum P(3) = 4.0e-128
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query:   537 LCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRN 595
             + I S+FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES   +  +  ++ N
Sbjct:   501 VAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILEN 559


>MGI|MGI:95413 [details] [associations]
            symbol:Ercc2 "excision repair cross-complementing rodent
            repair deficiency, complementation group 2" species:10090 "Mus
            musculus" [GO:0000075 "cell cycle checkpoint" evidence=ISO]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001701 "in
            utero embryonic development" evidence=IMP] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005675 "holo TFIIH complex" evidence=ISO] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0005819 "spindle" evidence=ISO]
            [GO:0005856 "cytoskeleton" evidence=IEA] [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IMP] [GO:0006283
            "transcription-coupled nucleotide-excision repair" evidence=ISO]
            [GO:0006289 "nucleotide-excision repair" evidence=ISO;IMP]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
            evidence=ISO] [GO:0006915 "apoptotic process" evidence=IMP]
            [GO:0006917 "induction of apoptosis" evidence=ISO] [GO:0006974
            "response to DNA damage stimulus" evidence=IEA] [GO:0006979
            "response to oxidative stress" evidence=ISO;IMP] [GO:0007059
            "chromosome segregation" evidence=ISO] [GO:0007568 "aging"
            evidence=IMP] [GO:0008022 "protein C-terminus binding"
            evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0008283 "cell proliferation" evidence=IMP]
            [GO:0009411 "response to UV" evidence=IMP] [GO:0009650 "UV
            protection" evidence=ISO;IMP] [GO:0009791 "post-embryonic
            development" evidence=IMP] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
            anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
            on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0021510 "spinal cord development" evidence=IMP]
            [GO:0022405 "hair cycle process" evidence=IMP] [GO:0030198
            "extracellular matrix organization" evidence=IMP] [GO:0030282 "bone
            mineralization" evidence=IMP] [GO:0032289 "central nervous system
            myelin formation" evidence=IMP] [GO:0033683 "nucleotide-excision
            repair, DNA incision" evidence=ISO] [GO:0035264 "multicellular
            organism growth" evidence=IMP] [GO:0035315 "hair cell
            differentiation" evidence=ISO;IMP] [GO:0040016 "embryonic cleavage"
            evidence=IMP] [GO:0043066 "negative regulation of apoptotic
            process" evidence=IMP] [GO:0043139 "5'-3' DNA helicase activity"
            evidence=ISO] [GO:0043249 "erythrocyte maturation" evidence=IMP]
            [GO:0043388 "positive regulation of DNA binding" evidence=IMP]
            [GO:0043588 "skin development" evidence=IMP] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO] [GO:0046872 "metal ion
            binding" evidence=IEA] [GO:0047485 "protein N-terminus binding"
            evidence=ISO] [GO:0048820 "hair follicle maturation" evidence=IMP]
            [GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
            "4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0060218
            "hematopoietic stem cell differentiation" evidence=IMP] [GO:0071817
            "MMXD complex" evidence=ISO] InterPro:IPR001945 InterPro:IPR002464
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
            Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 MGI:MGI:95413 INTERPRO:IPR013020
            GO:GO:0005524 GO:GO:0005737 GO:GO:0006915 GO:GO:0043066
            GO:GO:0043588 GO:GO:0007059 GO:GO:0006979 GO:GO:0006917
            GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0007568
            GO:GO:0001701 GO:GO:0001666 GO:GO:0045944 GO:GO:0030198
            GO:GO:0040016 GO:GO:0051539 GO:GO:0006366 GO:GO:0009791
            GO:GO:0060218 GO:GO:0004003 GO:GO:0035264 GO:GO:0071817
            GO:GO:0021510 GO:GO:0030282 GO:GO:0000075 GO:GO:0043388
            GO:GO:0008353 GO:GO:0009650 GO:GO:0005675 GO:GO:0019907
            GO:GO:0006283 eggNOG:COG1199 TIGRFAMs:TIGR00604 GO:GO:0035315
            GO:GO:0043139 GO:GO:0043249 EMBL:CH466639 HOGENOM:HOG000205390
            KO:K10844 OMA:KDVDGKC CTD:2068 HOVERGEN:HBG051498 GO:GO:0033683
            OrthoDB:EOG4BVRT2 GO:GO:0000441 GO:GO:0032289 GO:GO:0048820
            EMBL:U97572 EMBL:AK004652 EMBL:AK082761 IPI:IPI00310721
            RefSeq:NP_031975.2 UniGene:Mm.36524 ProteinModelPortal:O08811
            SMR:O08811 STRING:O08811 PhosphoSite:O08811 PaxDb:O08811
            PRIDE:O08811 Ensembl:ENSMUST00000062831 GeneID:13871 KEGG:mmu:13871
            GeneTree:ENSGT00550000075092 InParanoid:Q8C487 NextBio:284788
            Bgee:O08811 Genevestigator:O08811 GermOnline:ENSMUSG00000030400
            Uniprot:O08811
        Length = 760

 Score = 817 (292.7 bits), Expect = 4.4e-139, Sum P(3) = 4.4e-139
 Identities = 166/322 (51%), Positives = 219/322 (68%)

Query:     1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
             V+  R GK VDG+CHSLT+S VR +++   ++P C FYE+FD  GR+ PL  G+Y++  L
Sbjct:   121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDIHGRQMPLPAGIYNLDDL 180

Query:    61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
             K +G+  G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct:   181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240

Query:   121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
             NVC+DS+SV + RRT+++   N+ TL+ T+  +KE D  +LR+EY RLVEGLR+A  ARE
Sbjct:   241 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASVARE 300

Query:   181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
             TD  LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP  FL  
Sbjct:   301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360

Query:   241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
             ++ +    +  +  R+       L   L +  +   SP T L + ++ V    K      
Sbjct:   361 LAQRVC--IQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIII 418

Query:   301 ERLASLLRTLEITN-LTDFSSL 321
             E      RT  I N +  FS +
Sbjct:   419 EPFDD--RTPTIANPVLHFSCM 438

 Score = 641 (230.7 bits), Expect = 6.3e-135, Sum P(3) = 6.3e-135
 Identities = 124/225 (55%), Positives = 164/225 (72%)

Query:   627 SWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGEN 686
             S+Y+Q   + L    L     ++      V+  R GK VDG+CHSLT+S VR +++   +
Sbjct:    92 SFYEQQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQQDAS 151

Query:   687 IPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
             +P C FYE+FD  GR+ PL  G+Y++  LK +G+  G CPYFLAR +I+HA +VVYSYHY
Sbjct:   152 LPHCRFYEEFDIHGRQMPLPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVYSYHY 211

Query:   747 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLK 806
             LLDPKIA++VSKELAR +VVVFDEAHNIDNVC+DS+SV + RRT+++   N+ TL+ T+ 
Sbjct:   212 LLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSNLDTLQKTVL 271

Query:   807 EMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
              +KE D  +LR+EY RLVEGLR+A  ARETD  LANPVLPDE+LQ
Sbjct:   272 RIKETDEQRLRDEYRRLVEGLREASVARETDAHLANPVLPDEVLQ 316

 Score = 573 (206.8 bits), Expect = 2.0e-111, Sum P(3) = 2.0e-111
 Identities = 117/203 (57%), Positives = 148/203 (72%)

Query:   224 LRVQQVVQESPATF----LKD-ISSKPAPSMISEAYRYI-FSTE--EHLKTRLRVQQVVQ 275
             LR   V +E+ A      L D +  +  P  I  A  ++ F     E++K RLRVQ VVQ
Sbjct:   292 LREASVARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQ 351

Query:   276 ESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYT 335
             ESP  FL  ++ +VCI+RKPLRFCAERL SLL TLEI +L DFS L ++ + ATLVS+Y 
Sbjct:   352 ESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYA 411

Query:   336 KGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKIL 395
             KGF II+EPF D+ PT+ NPVL+F C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL
Sbjct:   412 KGFTIIIEPFDDRTPTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKIL 471

Query:   396 NFQPVIMHSFSMTLARPCLLPMV 418
             +F PV M +F+MTLAR CL PM+
Sbjct:   472 DFHPVTMATFTMTLARVCLCPMI 494

 Score = 426 (155.0 bits), Expect = 6.3e-135, Sum P(3) = 6.3e-135
 Identities = 81/120 (67%), Positives = 99/120 (82%)

Query:   424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             M L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LIVAY 
Sbjct:     1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60

Query:   484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN-EEINMTGLVLSSRKNLCIHSE 542
              A+PL+VTKL+YCSRTVPEIEKV+EEL +L  +Y +   E++   GL LSSRKNLCIH E
Sbjct:    61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120

 Score = 298 (110.0 bits), Expect = 4.4e-139, Sum P(3) = 4.4e-139
 Identities = 63/111 (56%), Positives = 82/111 (73%)

Query:   821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
             ARL E LRD    RE D +  + +          ++GKTDYG+M+FADKRFAR+DKR KL
Sbjct:   635 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKL 693

Query:   876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
             P+WIQE+LTD+  NL+ +E VQ++K +LRQMAQPF RED LG++LLSL+QL
Sbjct:   694 PRWIQEHLTDSNLNLTVDEGVQVAKYFLRQMAQPFHREDQLGLSLLSLEQL 744

 Score = 282 (104.3 bits), Expect = 4.4e-139, Sum P(3) = 4.4e-139
 Identities = 66/139 (47%), Positives = 93/139 (66%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             + S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct:   504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563

Query:   640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENIPVCDFYEKFDA 698
              KLLFIETQD  ++ SV+ E+  +  + GR   L S +   R K  E I   DF   +  
Sbjct:   564 NKLLFIETQDGAET-SVALEKYQEACENGRGAILLSVA---RGKVSEGI---DFVHHY-- 614

Query:   699 VGREAPL--APGVYSITKL 715
              GR   +   P VY+ +++
Sbjct:   615 -GRAVIMFGVPYVYTQSRI 632

 Score = 169 (64.5 bits), Expect = 3.5e-127, Sum P(3) = 3.5e-127
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query:   537 LCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRN 595
             + I S+FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES   +  +  ++ N
Sbjct:   502 VAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILEN 560


>UNIPROTKB|A8MX75 [details] [associations]
            symbol:ERCC2 "TFIIH basal transcription factor complex
            helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR001945 InterPro:IPR002464
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
            Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 GO:GO:0006289
            TIGRFAMs:TIGR00604 HOGENOM:HOG000205390 HOVERGEN:HBG051498
            EMBL:L47234 HGNC:HGNC:3434 ChiTaRS:ERCC2 IPI:IPI00442420
            ProteinModelPortal:A8MX75 STRING:A8MX75 PRIDE:A8MX75
            Ensembl:ENST00000391941 ArrayExpress:A8MX75 Bgee:A8MX75
            Uniprot:A8MX75
        Length = 706

 Score = 841 (301.1 bits), Expect = 6.4e-136, Sum P(3) = 6.4e-136
 Identities = 170/322 (52%), Positives = 223/322 (69%)

Query:     1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
             V+  R GK VDG+CHSLT+S VR +++   ++P C FYE+FDA GRE PL  G+Y++  L
Sbjct:    97 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 156

Query:    61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
             K +GR  G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct:   157 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 216

Query:   121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
             NVC+DS+SV + RRT+++  GN++TL+ T+  +KE D  +LR+EY RLVEGLR+A +ARE
Sbjct:   217 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 276

Query:   181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
             TD  LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP  FL  
Sbjct:   277 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 336

Query:   241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCA 300
             ++ +    +  +  R+       L   L +  +   SP T L + ++ V    K      
Sbjct:   337 LAQRVC--IQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIII 394

Query:   301 ERLASLLRTLEITN-LTDFSSL 321
             E      RT  I N +  FS +
Sbjct:   395 EPFDD--RTPTIANPILHFSCM 414

 Score = 662 (238.1 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
 Identities = 123/196 (62%), Positives = 158/196 (80%)

Query:   656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
             V+  R GK VDG+CHSLT+S VR +++   ++P C FYE+FDA GRE PL  G+Y++  L
Sbjct:    97 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 156

Query:   716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
             K +GR  G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct:   157 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 216

Query:   776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
             NVC+DS+SV + RRT+++  GN++TL+ T+  +KE D  +LR+EY RLVEGLR+A +ARE
Sbjct:   217 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 276

Query:   836 TDVVLANPVLPDEILQ 851
             TD  LANPVLPDE+LQ
Sbjct:   277 TDAHLANPVLPDEVLQ 292

 Score = 579 (208.9 bits), Expect = 1.9e-106, Sum P(3) = 1.9e-106
 Identities = 115/209 (55%), Positives = 150/209 (71%)

Query:   214 KRFIEYLKTRLRVQQVVQESPATFLKD-ISSKPAPSMISEAYRYI-FSTE--EHLKTRLR 269
             +R +E L+     ++         L D +  +  P  I  A  ++ F     E++K RLR
Sbjct:   262 RRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLR 321

Query:   270 VQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLAT 329
             VQ VVQESP  FL  ++ +VCI+RKPLRFCAERL SLL TLEIT+L DFS L ++ + AT
Sbjct:   322 VQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFAT 381

Query:   330 LVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLD 389
             LVS+Y KGF II+EPF D+ PT+ NP+L+F C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD
Sbjct:   382 LVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLD 441

Query:   390 MYPKILNFQPVIMHSFSMTLARPCLLPMV 418
             +YPKIL+F PV M +F+MTLAR CL PM+
Sbjct:   442 IYPKILDFHPVTMATFTMTLARVCLCPMI 470

 Score = 335 (123.0 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
 Identities = 66/96 (68%), Positives = 79/96 (82%)

Query:   448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
             M ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY  A+PL+VTKL+YCSRTVPEIEKV+
Sbjct:     1 MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 60

Query:   508 EELARLFDYYIKHN-EEINMTGLVLSSRKNLCIHSE 542
             EEL +L ++Y K   E++   GL LSSRKNLCIH E
Sbjct:    61 EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 96

 Score = 282 (104.3 bits), Expect = 6.4e-136, Sum P(3) = 6.4e-136
 Identities = 66/139 (47%), Positives = 93/139 (66%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             + S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct:   480 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 539

Query:   640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENIPVCDFYEKFDA 698
              KLLFIETQD  ++ SV+ E+  +  + GR   L S +   R K  E I   DF   +  
Sbjct:   540 NKLLFIETQDGAET-SVALEKYQEACENGRGAILLSVA---RGKVSEGI---DFVHHY-- 590

Query:   699 VGREAPL--APGVYSITKL 715
              GR   +   P VY+ +++
Sbjct:   591 -GRAVIMFGVPYVYTQSRI 608

 Score = 244 (91.0 bits), Expect = 6.4e-136, Sum P(3) = 6.4e-136
 Identities = 53/97 (54%), Positives = 67/97 (69%)

Query:   821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
             ARL E LRD    RE D +  + +          ++GKTDYG+M+FADKRFAR DKR KL
Sbjct:   611 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKL 669

Query:   876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTR 912
             P+WIQE+LTD   NL+ +E VQ++K +LRQMAQPF R
Sbjct:   670 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHR 706

 Score = 169 (64.5 bits), Expect = 5.1e-124, Sum P(3) = 5.1e-124
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query:   537 LCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRN 595
             + I S+FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES   +  +  ++ N
Sbjct:   478 VAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILEN 536

 Score = 38 (18.4 bits), Expect = 1.3e-46, Sum P(3) = 1.3e-46
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query:   631 QGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP 688
             QG ++ LQK  L   ET +    R   + R  ++V+G     +++   D H A   +P
Sbjct:   236 QGNLETLQKTVLRIKETDE---QRLRDEYR--RLVEG-LREASAARETDAHLANPVLP 287


>UNIPROTKB|F1PMH9 [details] [associations]
            symbol:ERCC2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0006289 "nucleotide-excision
            repair" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
            InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
            PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
            SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003677 GO:GO:0004003 GO:GO:0006289 TIGRFAMs:TIGR00604
            OMA:KDVDGKC GeneTree:ENSGT00550000075092 EMBL:AAEX03000876
            Ensembl:ENSCAFT00000007249 Uniprot:F1PMH9
        Length = 771

 Score = 835 (299.0 bits), Expect = 1.5e-134, Sum P(3) = 1.5e-134
 Identities = 168/318 (52%), Positives = 219/318 (68%)

Query:     5 RDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMG 64
             R GK VDG+CHSLT+S VR +++   ++P C FYE+FD  GR+ PL  G+Y++  LK +G
Sbjct:   137 RFGKDVDGKCHSLTASYVRAQYQQDSSLPHCRFYEEFDVHGRQVPLPAGIYNLDDLKALG 196

Query:    65 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 124
             +  G CPYFLAR +I+HA +VVYSYHYLLDPKIA +VSKELAR +VVVFDEAHNIDNVC+
Sbjct:   197 QRQGWCPYFLARYSILHANVVVYSYHYLLDPKIAELVSKELARKAVVVFDEAHNIDNVCI 256

Query:   125 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVV 184
             DS+SV I RRT+++  GN++TL+ T+  +KE D  +LREEY RLVEGLR+A +ARETD  
Sbjct:   257 DSMSVNITRRTLDRCQGNLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARETDAH 316

Query:   185 LANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSK 244
             LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP  FL  ++ +
Sbjct:   317 LANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQR 376

Query:   245 PAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLA 304
                 +  +  R+       L   L +  +   SP T L + ++ V    K      E   
Sbjct:   377 VC--IQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFD 434

Query:   305 SLLRTLEITN-LTDFSSL 321
                RT  I N +  FS +
Sbjct:   435 D--RTPTIANPILHFSCM 450

 Score = 656 (236.0 bits), Expect = 1.3e-130, Sum P(3) = 1.3e-130
 Identities = 121/192 (63%), Positives = 154/192 (80%)

Query:   660 RDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMG 719
             R GK VDG+CHSLT+S VR +++   ++P C FYE+FD  GR+ PL  G+Y++  LK +G
Sbjct:   137 RFGKDVDGKCHSLTASYVRAQYQQDSSLPHCRFYEEFDVHGRQVPLPAGIYNLDDLKALG 196

Query:   720 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 779
             +  G CPYFLAR +I+HA +VVYSYHYLLDPKIA +VSKELAR +VVVFDEAHNIDNVC+
Sbjct:   197 QRQGWCPYFLARYSILHANVVVYSYHYLLDPKIAELVSKELARKAVVVFDEAHNIDNVCI 256

Query:   780 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVV 839
             DS+SV I RRT+++  GN++TL+ T+  +KE D  +LREEY RLVEGLR+A +ARETD  
Sbjct:   257 DSMSVNITRRTLDRCQGNLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARETDAH 316

Query:   840 LANPVLPDEILQ 851
             LANPVLPDE+LQ
Sbjct:   317 LANPVLPDEVLQ 328

 Score = 574 (207.1 bits), Expect = 4.0e-105, Sum P(3) = 4.0e-105
 Identities = 114/209 (54%), Positives = 149/209 (71%)

Query:   214 KRFIEYLKTRLRVQQVVQESPATFLKD-ISSKPAPSMISEAYRYI-FSTE--EHLKTRLR 269
             +R +E L+     ++         L D +  +  P  I  A  ++ F     E++K RLR
Sbjct:   298 RRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLR 357

Query:   270 VQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLAT 329
             VQ VVQESP  FL  ++ +VCI+RKPLRFCAERL SLL TLEI +L DFS L ++ + AT
Sbjct:   358 VQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFAT 417

Query:   330 LVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLD 389
             LVS+Y KGF II+EPF D+ PT+ NP+L+F C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD
Sbjct:   418 LVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLD 477

Query:   390 MYPKILNFQPVIMHSFSMTLARPCLLPMV 418
             +YPKIL+F PV M +F+MTLAR CL PM+
Sbjct:   478 IYPKILDFHPVTMATFTMTLARVCLCPMI 506

 Score = 426 (155.0 bits), Expect = 1.3e-130, Sum P(3) = 1.3e-130
 Identities = 81/121 (66%), Positives = 100/121 (82%)

Query:   423 AMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
             A  L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY
Sbjct:    12 AARLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAY 71

Query:   483 MNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN-EEINMTGLVLSSRKNLCIHS 541
               A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K   E++   GL LSSRKNLCIH 
Sbjct:    72 QRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHP 131

Query:   542 E 542
             E
Sbjct:   132 E 132

 Score = 282 (104.3 bits), Expect = 1.5e-134, Sum P(3) = 1.5e-134
 Identities = 66/139 (47%), Positives = 93/139 (66%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             + S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct:   516 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 575

Query:   640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENIPVCDFYEKFDA 698
              KLLFIETQD  ++ SV+ E+  +  + GR   L S +   R K  E I   DF   +  
Sbjct:   576 NKLLFIETQDGAET-SVALEKYQEACENGRGAILLSVA---RGKVSEGI---DFVHHY-- 626

Query:   699 VGREAPL--APGVYSITKL 715
              GR   +   P VY+ +++
Sbjct:   627 -GRAVIMFGVPYVYTQSRI 644

 Score = 237 (88.5 bits), Expect = 1.5e-134, Sum P(3) = 1.5e-134
 Identities = 43/63 (68%), Positives = 55/63 (87%)

Query:   850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQP 909
             ++GKTDYG+M+FADKRFAR+DKR KLP+WIQE+LTD   NL+ +E VQ++K +LRQMAQP
Sbjct:   679 IRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQP 738

Query:   910 FTR 912
             F R
Sbjct:   739 FHR 741

 Score = 169 (64.5 bits), Expect = 1.2e-122, Sum P(3) = 1.2e-122
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query:   537 LCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRN 595
             + I S+FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES   +  +  ++ N
Sbjct:   514 VAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILEN 572

 Score = 41 (19.5 bits), Expect = 2.0e-56, Sum P(3) = 2.0e-56
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query:   631 QGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP 688
             QG ++ LQK  L   ET    D + + +E   ++V+G     +++   D H A   +P
Sbjct:   272 QGNLETLQKTVLRIKET----DEQRL-REEYRRLVEG-LREASAARETDAHLANPVLP 323


>UNIPROTKB|E7EVE9 [details] [associations]
            symbol:ERCC2 "TFIIH basal transcription factor complex
            helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR002464
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
            Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
            SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604 EMBL:L47234
            HGNC:HGNC:3434 ChiTaRS:ERCC2 IPI:IPI00745781
            ProteinModelPortal:E7EVE9 Ensembl:ENST00000391944 UCSC:uc010ejz.2
            ArrayExpress:E7EVE9 Bgee:E7EVE9 Uniprot:E7EVE9
        Length = 682

 Score = 621 (223.7 bits), Expect = 9.1e-117, Sum P(3) = 9.1e-117
 Identities = 132/264 (50%), Positives = 172/264 (65%)

Query:    59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
             KL  +G  L           I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHN
Sbjct:   101 KLPFLGLALSSRKNLCIHPEILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHN 160

Query:   119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
             IDNVC+DS+SV + RRT+++  GN++TL+ T+  +KE D  +LR+EY RLVEGLR+A +A
Sbjct:   161 IDNVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAA 220

Query:   179 RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL 238
             RETD  LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP  FL
Sbjct:   221 RETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFL 280

Query:   239 KDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRF 298
               ++ +    +  +  R+       L   L +  +   SP T L + ++ V    K    
Sbjct:   281 SGLAQRVC--IQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTI 338

Query:   299 CAERLASLLRTLEITN-LTDFSSL 321
               E      RT  I N +  FS +
Sbjct:   339 IIEPFDD--RTPTIANPILHFSCM 360

 Score = 579 (208.9 bits), Expect = 1.1e-111, Sum P(3) = 1.1e-111
 Identities = 115/209 (55%), Positives = 150/209 (71%)

Query:   214 KRFIEYLKTRLRVQQVVQESPATFLKD-ISSKPAPSMISEAYRYI-FSTE--EHLKTRLR 269
             +R +E L+     ++         L D +  +  P  I  A  ++ F     E++K RLR
Sbjct:   208 RRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLR 267

Query:   270 VQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLAT 329
             VQ VVQESP  FL  ++ +VCI+RKPLRFCAERL SLL TLEIT+L DFS L ++ + AT
Sbjct:   268 VQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFAT 327

Query:   330 LVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLD 389
             LVS+Y KGF II+EPF D+ PT+ NP+L+F C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD
Sbjct:   328 LVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLD 387

Query:   390 MYPKILNFQPVIMHSFSMTLARPCLLPMV 418
             +YPKIL+F PV M +F+MTLAR CL PM+
Sbjct:   388 IYPKILDFHPVTMATFTMTLARVCLCPMI 416

 Score = 442 (160.7 bits), Expect = 8.7e-39, P = 8.7e-39
 Identities = 85/138 (61%), Positives = 107/138 (77%)

Query:   714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
             KL  +G  L           I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHN
Sbjct:   101 KLPFLGLALSSRKNLCIHPEILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHN 160

Query:   774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
             IDNVC+DS+SV + RRT+++  GN++TL+ T+  +KE D  +LR+EY RLVEGLR+A +A
Sbjct:   161 IDNVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAA 220

Query:   834 RETDVVLANPVLPDEILQ 851
             RETD  LANPVLPDE+LQ
Sbjct:   221 RETDAHLANPVLPDEVLQ 238

 Score = 425 (154.7 bits), Expect = 2.4e-88, Sum P(3) = 2.4e-88
 Identities = 85/137 (62%), Positives = 107/137 (78%)

Query:   424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             M L +D L V+FPY+YIYPEQ++YM ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY 
Sbjct:     1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60

Query:   484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN-EEINMTGLVLSSRKNLCIHSE 542
              A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K   E++   GL LSSRKNLCIH E
Sbjct:    61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120

Query:   543 FETRDDISVIRNYGQLL 559
                  ++ V+ +Y  LL
Sbjct:   121 I-LHANV-VVYSYHYLL 135

 Score = 294 (108.6 bits), Expect = 9.1e-117, Sum P(3) = 9.1e-117
 Identities = 63/111 (56%), Positives = 80/111 (72%)

Query:   821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
             ARL E LRD    RE D +  + +          ++GKTDYG+M+FADKRFAR DKR KL
Sbjct:   557 ARL-EYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKL 615

Query:   876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
             P+WIQE+LTD   NL+ +E VQ++K +LRQMAQPF RED LG++LLSL+QL
Sbjct:   616 PRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHREDQLGLSLLSLEQL 666

 Score = 282 (104.3 bits), Expect = 9.1e-117, Sum P(3) = 9.1e-117
 Identities = 66/139 (47%), Positives = 93/139 (66%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             + S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct:   426 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 485

Query:   640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENIPVCDFYEKFDA 698
              KLLFIETQD  ++ SV+ E+  +  + GR   L S +   R K  E I   DF   +  
Sbjct:   486 NKLLFIETQDGAET-SVALEKYQEACENGRGAILLSVA---RGKVSEGI---DFVHHY-- 536

Query:   699 VGREAPL--APGVYSITKL 715
              GR   +   P VY+ +++
Sbjct:   537 -GRAVIMFGVPYVYTQSRI 554

 Score = 169 (64.5 bits), Expect = 7.1e-105, Sum P(3) = 7.1e-105
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query:   537 LCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRN 595
             + I S+FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES   +  +  ++ N
Sbjct:   424 VAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILEN 482

 Score = 38 (18.4 bits), Expect = 9.3e-63, Sum P(3) = 9.3e-63
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query:   631 QGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP 688
             QG ++ LQK  L   ET +    R   + R  ++V+G     +++   D H A   +P
Sbjct:   182 QGNLETLQKTVLRIKETDE---QRLRDEYR--RLVEG-LREASAARETDAHLANPVLP 233


>POMBASE|SPAC1D4.12 [details] [associations]
            symbol:rad15 "transcription factor TFIIH complex subunit
            Rad15" species:4896 "Schizosaccharomyces pombe" [GO:0000112
            "nucleotide-excision repair factor 3 complex" evidence=IGI]
            [GO:0000439 "core TFIIH complex" evidence=ISO] [GO:0000717
            "nucleotide-excision repair, DNA duplex unwinding" evidence=IGI]
            [GO:0000991 "core RNA polymerase II binding transcription factor
            activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005675 "holo TFIIH complex" evidence=ISO]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0006367 "transcription
            initiation from RNA polymerase II promoter" evidence=ISO]
            [GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
            evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
            [GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
            InterPro:IPR001945 InterPro:IPR006554 InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
            PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
            PomBase:SPAC1D4.12 INTERPRO:IPR013020 GO:GO:0005829 GO:GO:0005524
            EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677
            GO:GO:0051539 GO:GO:0006367 GO:GO:0000991 GO:GO:0005675
            eggNOG:COG1199 TIGRFAMs:TIGR00604 HOGENOM:HOG000205390 KO:K10844
            OMA:KDVDGKC GO:GO:0043141 GO:GO:0000717 GO:GO:0000439 GO:GO:0000112
            EMBL:X64583 EMBL:X60499 PIR:S22660 RefSeq:NP_593025.1
            ProteinModelPortal:P26659 IntAct:P26659 STRING:P26659
            EnsemblFungi:SPAC1D4.12.1 GeneID:2542203 KEGG:spo:SPAC1D4.12
            OrthoDB:EOG4G1QQH NextBio:20803273 Uniprot:P26659
        Length = 772

 Score = 655 (235.6 bits), Expect = 3.0e-112, Sum P(3) = 3.0e-112
 Identities = 114/241 (47%), Positives = 177/241 (73%)

Query:     1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
             V +E++G +VD RC SLT+  VR++  AG ++P C+F++  + +   + ++ GV+++  +
Sbjct:   120 VRREKNGNVVDARCRSLTAGFVREQRLAGMDVPTCEFHDNLEDLEPHSLISNGVWTLDDI 179

Query:    61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
              E G +   CPYF  R+ +    +++YSYHYLLDPKIA  VS+EL++  +VVFDEAHNID
Sbjct:   180 TEYGEKTTRCPYFTVRRMLPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239

Query:   121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
             NVC++SLS+ +   ++ KA  +I +LE  + E+K++DS KL++EY +LV GL+DA +A +
Sbjct:   240 NVCIESLSIDLTESSLRKASKSILSLEQKVNEVKQSDSKKLQDEYQKLVRGLQDANAAND 299

Query:   181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
              D  +ANPVLP+++L+E VPGNIR AEHF+ FLKRF+EYLKTR++V  V+ E+P +FL+ 
Sbjct:   300 EDQFMANPVLPEDVLKEAVPGNIRRAEHFIAFLKRFVEYLKTRMKVLHVIAETPTSFLQH 359

Query:   241 I 241
             +
Sbjct:   360 V 360

 Score = 500 (181.1 bits), Expect = 8.2e-75, Sum P(2) = 8.2e-75
 Identities = 104/263 (39%), Positives = 166/263 (63%)

Query:   655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
             SV +E++G +VD RC SLT+  VR++  AG ++P C+F++  + +   + ++ GV+++  
Sbjct:   119 SVRREKNGNVVDARCRSLTAGFVREQRLAGMDVPTCEFHDNLEDLEPHSLISNGVWTLDD 178

Query:   715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
             + E G +   CPYF  R+ +    +++YSYHYLLDPKIA  VS+EL++  +VVFDEAHNI
Sbjct:   179 ITEYGEKTTRCPYFTVRRMLPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNI 238

Query:   775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
             DNVC++SLS+ +   ++ KA  +I +LE  + E+K++DS KL++EY +LV GL+DA +A 
Sbjct:   239 DNVCIESLSIDLTESSLRKASKSILSLEQKVNEVKQSDSKKLQDEYQKLVRGLQDANAAN 298

Query:   835 ETDVVLANPVLPDEILQGKTDYGI-----MIFADKRFARSDK-RSKLPKWIQEYLTDNLT 888
             + D  +ANPVLP+++L+      I      I   KRF    K R K+   I E  T  L 
Sbjct:   299 DEDQFMANPVLPEDVLKEAVPGNIRRAEHFIAFLKRFVEYLKTRMKVLHVIAETPTSFLQ 358

Query:   889 NLSTEEAVQLSKRWLRQMAQPFT 911
             ++  ++   + K+ LR  A+  T
Sbjct:   359 HV--KDITFIDKKPLRFCAERLT 379

 Score = 486 (176.1 bits), Expect = 5.8e-86, Sum P(3) = 5.8e-86
 Identities = 94/183 (51%), Positives = 131/183 (71%)

Query:   239 KDISSKPAPSMISEAYRYIFSTE---EHLKTRLRVQQVVQESPATFLKDISSKVCIERKP 295
             +D+  +  P  I  A  +I   +   E+LKTR++V  V+ E+P +FL+ +     I++KP
Sbjct:   311 EDVLKEAVPGNIRRAEHFIAFLKRFVEYLKTRMKVLHVIAETPTSFLQHVKDITFIDKKP 370

Query:   296 LRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNP 355
             LRFCAERL SL+R L+I+ + DF SL  +   ATLV++Y +GF +I+EPF  +  TVPNP
Sbjct:   371 LRFCAERLTSLVRALQISLVEDFHSLQQVVAFATLVATYERGFILILEPFETENATVPNP 430

Query:   356 VLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLL 415
             +L F CLD+S+AIKPVF+RF++V+ITSGTLSPLDMYPK+L F  V+  S+ M+LAR C L
Sbjct:   431 ILRFSCLDASIAIKPVFERFRSVIITSGTLSPLDMYPKMLQFNTVMQESYGMSLARNCFL 490

Query:   416 PMV 418
             PMV
Sbjct:   491 PMV 493

 Score = 327 (120.2 bits), Expect = 8.2e-75, Sum P(2) = 8.2e-75
 Identities = 70/130 (53%), Positives = 85/130 (65%)

Query:   424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             M   IDDLP+ FPY  IYPEQY YM +LK +LDA G  LLEMPSGTGKT SLLSLIV+Y 
Sbjct:     1 MKFYIDDLPILFPYPRIYPEQYQYMCDLKHSLDAGGIALLEMPSGTGKTISLLSLIVSYQ 60

Query:   484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
               +P +  KL+YCSRT+ EI+K + EL RL  Y       E    GL L+SRKNLC+H  
Sbjct:    61 QHYP-EHRKLIYCSRTMSEIDKALAELKRLMAYRTSQLGYEEPFLGLGLTSRKNLCLHPS 119

Query:   543 FETRDDISVI 552
                  + +V+
Sbjct:   120 VRREKNGNVV 129

 Score = 270 (100.1 bits), Expect = 3.0e-112, Sum P(3) = 3.0e-112
 Identities = 57/112 (50%), Positives = 77/112 (68%)

Query:   821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
             ARL E LRD    RE D +  + +         +L+GK D+GIM+ ADKR+ RSDKR+KL
Sbjct:   634 ARL-EFLRDTYQIREADFLTFDAMRHAAQCLGRVLRGKDDHGIMVLADKRYGRSDKRTKL 692

Query:   876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLL 927
             PKWIQ+Y+T+  TNLST+ ++ L+K++LR MAQPFT  D  G++  SLD LL
Sbjct:   693 PKWIQQYITEGATNLSTDMSLALAKKFLRTMAQPFTASDQEGISWWSLDDLL 744

 Score = 220 (82.5 bits), Expect = 3.0e-112, Sum P(3) = 3.0e-112
 Identities = 45/96 (46%), Positives = 63/96 (65%)

Query:   554 NYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVC 613
             +YG  L    C +P  VV   +  + + S FE R+D SV+RNYG +LV+ + + PDG+V 
Sbjct:   479 SYGMSLAR-NCFLPM-VVTRGSDQVAISSKFEARNDPSVVRNYGNILVEFSKITPDGLVA 536

Query:   614 FFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
             FF SYLYLES+V+SW   GI+D + K KL+ +ET D
Sbjct:   537 FFPSYLYLESIVSSWQSMGILDEVWKYKLILVETPD 572

 Score = 154 (59.3 bits), Expect = 2.6e-105, Sum P(3) = 2.6e-105
 Identities = 28/65 (43%), Positives = 43/65 (66%)

Query:   529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRD 588
             +V      + I S+FE R+D SV+RNYG +LV+ + + PDG+V FF SYLYLES+  +  
Sbjct:   493 VVTRGSDQVAISSKFEARNDPSVVRNYGNILVEFSKITPDGLVAFFPSYLYLESIVSSWQ 552

Query:   589 DISVI 593
              + ++
Sbjct:   553 SMGIL 557


>UNIPROTKB|J9NWT1 [details] [associations]
            symbol:ERCC2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0006289 "nucleotide-excision
            repair" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
            InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
            PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
            SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003677 GO:GO:0004003 GO:GO:0006289 TIGRFAMs:TIGR00604
            GeneTree:ENSGT00550000075092 EMBL:AAEX03000876
            Ensembl:ENSCAFT00000044333 Uniprot:J9NWT1
        Length = 707

 Score = 835 (299.0 bits), Expect = 4.3e-111, Sum P(2) = 4.3e-111
 Identities = 168/318 (52%), Positives = 219/318 (68%)

Query:     5 RDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMG 64
             R GK VDG+CHSLT+S VR +++   ++P C FYE+FD  GR+ PL  G+Y++  LK +G
Sbjct:   125 RFGKDVDGKCHSLTASYVRAQYQQDSSLPHCRFYEEFDVHGRQVPLPAGIYNLDDLKALG 184

Query:    65 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 124
             +  G CPYFLAR +I+HA +VVYSYHYLLDPKIA +VSKELAR +VVVFDEAHNIDNVC+
Sbjct:   185 QRQGWCPYFLARYSILHANVVVYSYHYLLDPKIAELVSKELARKAVVVFDEAHNIDNVCI 244

Query:   125 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVV 184
             DS+SV I RRT+++  GN++TL+ T+  +KE D  +LREEY RLVEGLR+A +ARETD  
Sbjct:   245 DSMSVNITRRTLDRCQGNLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARETDAH 304

Query:   185 LANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSK 244
             LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQESP  FL  ++ +
Sbjct:   305 LANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQR 364

Query:   245 PAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLA 304
                 +  +  R+       L   L +  +   SP T L + ++ V    K      E   
Sbjct:   365 VC--IQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFD 422

Query:   305 SLLRTLEITN-LTDFSSL 321
                RT  I N +  FS +
Sbjct:   423 D--RTPTIANPILHFSCM 438

 Score = 656 (236.0 bits), Expect = 1.9e-107, Sum P(2) = 1.9e-107
 Identities = 121/192 (63%), Positives = 154/192 (80%)

Query:   660 RDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMG 719
             R GK VDG+CHSLT+S VR +++   ++P C FYE+FD  GR+ PL  G+Y++  LK +G
Sbjct:   125 RFGKDVDGKCHSLTASYVRAQYQQDSSLPHCRFYEEFDVHGRQVPLPAGIYNLDDLKALG 184

Query:   720 RELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCV 779
             +  G CPYFLAR +I+HA +VVYSYHYLLDPKIA +VSKELAR +VVVFDEAHNIDNVC+
Sbjct:   185 QRQGWCPYFLARYSILHANVVVYSYHYLLDPKIAELVSKELARKAVVVFDEAHNIDNVCI 244

Query:   780 DSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVV 839
             DS+SV I RRT+++  GN++TL+ T+  +KE D  +LREEY RLVEGLR+A +ARETD  
Sbjct:   245 DSMSVNITRRTLDRCQGNLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARETDAH 304

Query:   840 LANPVLPDEILQ 851
             LANPVLPDE+LQ
Sbjct:   305 LANPVLPDEVLQ 316

 Score = 574 (207.1 bits), Expect = 3.1e-82, Sum P(2) = 3.1e-82
 Identities = 114/209 (54%), Positives = 149/209 (71%)

Query:   214 KRFIEYLKTRLRVQQVVQESPATFLKD-ISSKPAPSMISEAYRYI-FSTE--EHLKTRLR 269
             +R +E L+     ++         L D +  +  P  I  A  ++ F     E++K RLR
Sbjct:   286 RRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLR 345

Query:   270 VQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLAT 329
             VQ VVQESP  FL  ++ +VCI+RKPLRFCAERL SLL TLEI +L DFS L ++ + AT
Sbjct:   346 VQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFAT 405

Query:   330 LVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLD 389
             LVS+Y KGF II+EPF D+ PT+ NP+L+F C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD
Sbjct:   406 LVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLD 465

Query:   390 MYPKILNFQPVIMHSFSMTLARPCLLPMV 418
             +YPKIL+F PV M +F+MTLAR CL PM+
Sbjct:   466 IYPKILDFHPVTMATFTMTLARVCLCPMI 494

 Score = 428 (155.7 bits), Expect = 1.9e-107, Sum P(2) = 1.9e-107
 Identities = 81/120 (67%), Positives = 100/120 (83%)

Query:   424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             M L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY 
Sbjct:     1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60

Query:   484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN-EEINMTGLVLSSRKNLCIHSE 542
              A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K   E++   GL LSSRKNLCIH E
Sbjct:    61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120

 Score = 282 (104.3 bits), Expect = 4.3e-111, Sum P(2) = 4.3e-111
 Identities = 66/139 (47%), Positives = 93/139 (66%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             + S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VASWY+QGI++N+Q+
Sbjct:   504 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQR 563

Query:   640 RKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHKAGENIPVCDFYEKFDA 698
              KLLFIETQD  ++ SV+ E+  +  + GR   L S +   R K  E I   DF   +  
Sbjct:   564 NKLLFIETQDGAET-SVALEKYQEACENGRGAILLSVA---RGKVSEGI---DFVHHY-- 614

Query:   699 VGREAPL--APGVYSITKL 715
              GR   +   P VY+ +++
Sbjct:   615 -GRAVIMFGVPYVYTQSRI 632

 Score = 169 (64.5 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query:   537 LCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRN 595
             + I S+FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES   +  +  ++ N
Sbjct:   502 VAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILEN 560

 Score = 41 (19.5 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query:   631 QGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP 688
             QG ++ LQK  L   ET    D + + +E   ++V+G     +++   D H A   +P
Sbjct:   260 QGNLETLQKTVLRIKET----DEQRL-REEYRRLVEG-LREASAARETDAHLANPVLP 311


>WB|WBGene00021752 [details] [associations]
            symbol:Y50D7A.2 species:6239 "Caenorhabditis elegans"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
            DNA helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
            "nucleotide-excision repair" evidence=IEA] [GO:0016818 "hydrolase
            activity, acting on acid anhydrides, in phosphorus-containing
            anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
            process" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
            acid anhydrides" evidence=IEA] [GO:0009792 "embryo development
            ending in birth or egg hatching" evidence=IMP] [GO:0040010
            "positive regulation of growth rate" evidence=IMP] [GO:0040007
            "growth" evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
            PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
            GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0040007
            GO:GO:0040010 GO:GO:0002119 GO:GO:0003677 GO:GO:0000003
            EMBL:FO081772 GO:GO:0004003 GO:GO:0006289 eggNOG:COG1199
            TIGRFAMs:TIGR00604 HOGENOM:HOG000205390 KO:K10844 OMA:KDVDGKC
            GeneTree:ENSGT00550000075092 RefSeq:NP_497182.2 UniGene:Cel.30456
            ProteinModelPortal:Q9N3L2 STRING:Q9N3L2 PaxDb:Q9N3L2
            EnsemblMetazoa:Y50D7A.2 GeneID:175190 KEGG:cel:CELE_Y50D7A.2
            UCSC:Y50D7A.2 CTD:175190 WormBase:Y50D7A.2 InParanoid:Q9N3L2
            NextBio:887130 Uniprot:Q9N3L2
        Length = 606

 Score = 582 (209.9 bits), Expect = 7.6e-106, Sum P(3) = 7.6e-106
 Identities = 110/182 (60%), Positives = 142/182 (78%)

Query:    60 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 119
             L+ +GRE  +CPYF ARQAI  A IVVYSYHY+LDPKIA +VSK+ +R SVVVFDEAHNI
Sbjct:    29 LRSLGREKKICPYFTARQAINRAHIVVYSYHYILDPKIAELVSKDFSRKSVVVFDEAHNI 88

Query:   120 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 179
             DNVC++S+SV I+++  ++A+  +Q+LEG +  MK ++S KL+ EY +LVEGL+  +  R
Sbjct:    89 DNVCIESMSVAISQKNADRALQELQSLEGVVNRMKSSNSEKLQSEYDKLVEGLKRTERER 148

Query:   180 ETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLK 239
               D  LANPVLPD+IL E VPGNIR A HF+ FLKRF+EY++ RLR  QV+ ESPA F+K
Sbjct:   149 ANDERLANPVLPDQILHEAVPGNIRQANHFLLFLKRFVEYIRHRLRTHQVLIESPAAFMK 208

Query:   240 DI 241
             DI
Sbjct:   209 DI 210

 Score = 467 (169.5 bits), Expect = 8.5e-93, Sum P(3) = 8.5e-93
 Identities = 107/254 (42%), Positives = 157/254 (61%)

Query:   169 VEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQ 228
             +E +  A S +  D  L      + ++  +   N   +E       + +E LK   R + 
Sbjct:    93 IESMSVAISQKNADRALQELQSLEGVVNRMKSSN---SEKLQSEYDKLVEGLKRTERERA 149

Query:   229 VVQESPATFLKD-ISSKPAPSMISEAYRYIFSTE---EHLKTRLRVQQVVQESPATFLKD 284
               +      L D I  +  P  I +A  ++   +   E+++ RLR  QV+ ESPA F+KD
Sbjct:   150 NDERLANPVLPDQILHEAVPGNIRQANHFLLFLKRFVEYIRHRLRTHQVLIESPAAFMKD 209

Query:   285 ISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEP 344
             I  ++CIERKP+RFCAERL++L++TLEIT+  D  +L  +T L TLVS+Y+KGF++IVEP
Sbjct:   210 ILDRMCIERKPMRFCAERLSNLVKTLEITDNGDVWALSQVTTLCTLVSTYSKGFSVIVEP 269

Query:   345 FSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHS 404
               D +      V+   C D+S+AI+PV  RFQ+V+ITSGTLSPL+MYPK+L+F P ++ S
Sbjct:   270 -QDGSQLA---VITLSCHDASIAIRPVMSRFQSVIITSGTLSPLEMYPKVLDFDPSVIAS 325

Query:   405 FSMTLARPCLLPMV 418
             F+MTLARPCL P+V
Sbjct:   326 FTMTLARPCLSPLV 339

 Score = 424 (154.3 bits), Expect = 2.9e-37, P = 2.9e-37
 Identities = 80/136 (58%), Positives = 106/136 (77%)

Query:   715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
             L+ +GRE  +CPYF ARQAI  A IVVYSYHY+LDPKIA +VSK+ +R SVVVFDEAHNI
Sbjct:    29 LRSLGREKKICPYFTARQAINRAHIVVYSYHYILDPKIAELVSKDFSRKSVVVFDEAHNI 88

Query:   775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
             DNVC++S+SV I+++  ++A+  +Q+LEG +  MK ++S KL+ EY +LVEGL+  +  R
Sbjct:    89 DNVCIESMSVAISQKNADRALQELQSLEGVVNRMKSSNSEKLQSEYDKLVEGLKRTERER 148

Query:   835 ETDVVLANPVLPDEIL 850
               D  LANPVLPD+IL
Sbjct:   149 ANDERLANPVLPDQIL 164

 Score = 261 (96.9 bits), Expect = 7.6e-106, Sum P(3) = 7.6e-106
 Identities = 55/111 (49%), Positives = 74/111 (66%)

Query:   821 ARLVEGLRDAQSARETDVVLANPV-----LPDEILQGKTDYGIMIFADKRFARSDKRSKL 875
             ARL E LRD    +E D +  + +          L+ KTDYG+M+FADKRF+R+DKR KL
Sbjct:   480 ARL-EYLRDQFGIKENDFLTFDAMRHTAQCMGRALRSKTDYGLMVFADKRFSRNDKRGKL 538

Query:   876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
             P+W+QEYL    TNLS +EA Q+++RWL  MAQPF +E  LGV+LL  + +
Sbjct:   539 PRWMQEYLEPACTNLSIDEAAQVARRWLTLMAQPFEKEHQLGVSLLDKEMV 589

 Score = 256 (95.2 bits), Expect = 7.6e-106, Sum P(3) = 7.6e-106
 Identities = 65/141 (46%), Positives = 88/141 (62%)

Query:   548 DISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVV 607
             D SVI ++   L    C+ P  VV      + + S FE R D++VIRNYG L++++A +V
Sbjct:   319 DPSVIASFTMTLAR-PCLSPL-VVARGNDQVAMTSRFEQRADVAVIRNYGNLVLEMASLV 376

Query:   608 PDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVD- 666
             PDG+V FFTSYLY+E+V+  WY+Q IID L K KLLFIET DAL++ S + E+  +  D 
Sbjct:   377 PDGMVVFFTSYLYMENVIGVWYEQHIIDELMKYKLLFIETNDALET-SAALEKYVEACDS 435

Query:   667 GRCHSLTSSSVRDRHKAGENI 687
             GR   L S +   R K  E I
Sbjct:   436 GRGAVLFSVA---RGKVSEGI 453

 Score = 152 (58.6 bits), Expect = 6.5e-95, Sum P(3) = 6.5e-95
 Identities = 28/55 (50%), Positives = 41/55 (74%)

Query:   529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
             +V      + + S FE R D++VIRNYG L++++A +VPDG+V FFTSYLY+E+V
Sbjct:   339 VVARGNDQVAMTSRFEQRADVAVIRNYGNLVLEMASLVPDGMVVFFTSYLYMENV 393


>DICTYBASE|DDB_G0267414 [details] [associations]
            symbol:repD "transcription factor IIH component"
            species:44689 "Dictyostelium discoideum" [GO:0006974 "response to
            DNA damage stimulus" evidence=IEA;IEP] [GO:0043141 "ATP-dependent
            5'-3' DNA helicase activity" evidence=ISS] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=ISS]
            [GO:0006289 "nucleotide-excision repair" evidence=IEA;ISS]
            [GO:0005675 "holo TFIIH complex" evidence=ISS] [GO:0005524 "ATP
            binding" evidence=IEA;ISS] [GO:0000287 "magnesium ion binding"
            evidence=ISS] [GO:0016818 "hydrolase activity, acting on acid
            anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0016817 "hydrolase activity, acting on acid anhydrides"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
            process" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000443 "SSL2-core TFIIH complex portion
            of holo TFIIH complex" evidence=ISS] [GO:0000442 "SSL2-core TFIIH
            complex portion of NEF3 complex" evidence=ISS] [GO:0051539 "4 iron,
            4 sulfur cluster binding" evidence=IEA] [GO:0051536 "iron-sulfur
            cluster binding" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR001945 InterPro:IPR002464
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
            Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 dictyBase:DDB_G0267414
            INTERPRO:IPR013020 GO:GO:0005524 GenomeReviews:CM000150_GR
            GO:GO:0006355 GO:GO:0000287 GO:GO:0003677 EMBL:AAFI02000003
            GO:GO:0051539 GO:GO:0006366 GO:GO:0006289 eggNOG:COG1199
            TIGRFAMs:TIGR00604 KO:K10844 OMA:KDVDGKC EMBL:U77066
            RefSeq:XP_647302.1 ProteinModelPortal:Q55G81 STRING:Q55G81
            EnsemblProtists:DDB0191272 GeneID:8616111 KEGG:ddi:DDB_G0267414
            ProtClustDB:CLSZ2431526 GO:GO:0000443 GO:GO:0000442 GO:GO:0043141
            Uniprot:Q55G81
        Length = 776

 Score = 603 (217.3 bits), Expect = 3.4e-103, Sum P(3) = 3.4e-103
 Identities = 123/289 (42%), Positives = 186/289 (64%)

Query:     1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
             VS+ERDGK+VD  C  LTSS  R+   + +    C F+E F++ G+E  L  GVYS+  L
Sbjct:   120 VSEERDGKVVDALCRELTSSWNRESPTSEK----CKFFENFESNGKEI-LLEGVYSLEDL 174

Query:    61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
             KE G +  +CPYFL+R  +  A IV++SY YLLDPKIA+++S     +S+VVFDEAHNID
Sbjct:   175 KEYGLKHQMCPYFLSRHMLNFANIVIFSYQYLLDPKIASLISSSFPSNSIVVFDEAHNID 234

Query:   121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
             NVC+++LS+ I+ + ++ +  NI  +   ++++K+ D  +L++EY RLV GL  + S R 
Sbjct:   235 NVCINALSINIDNKLLDTSSKNIAKINKQIEDIKKVDEKRLKDEYQRLVNGLARSGSTR- 293

Query:   181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
              D   ++PVLP++++QE VPGNIR AEHF+  L+R ++YLK+RL+ Q ++ ESP  FL+ 
Sbjct:   294 ADETTSDPVLPNDVIQEAVPGNIRKAEHFISLLRRVVDYLKSRLKSQMLLSESPLAFLQG 353

Query:   241 ISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKV 289
             +    A  + S   R+  S    L   LR+  V Q S  + + D ++ V
Sbjct:   354 LYH--ATQISSRTLRFCSSRLSSLLRTLRINDVNQFSGISLIADFATLV 400

 Score = 443 (161.0 bits), Expect = 2.1e-67, Sum P(2) = 2.1e-67
 Identities = 87/196 (44%), Positives = 133/196 (67%)

Query:   656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
             VS+ERDGK+VD  C  LTSS  R+   + +    C F+E F++ G+E  L  GVYS+  L
Sbjct:   120 VSEERDGKVVDALCRELTSSWNRESPTSEK----CKFFENFESNGKEI-LLEGVYSLEDL 174

Query:   716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
             KE G +  +CPYFL+R  +  A IV++SY YLLDPKIA+++S     +S+VVFDEAHNID
Sbjct:   175 KEYGLKHQMCPYFLSRHMLNFANIVIFSYQYLLDPKIASLISSSFPSNSIVVFDEAHNID 234

Query:   776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
             NVC+++LS+ I+ + ++ +  NI  +   ++++K+ D  +L++EY RLV GL  + S R 
Sbjct:   235 NVCINALSINIDNKLLDTSSKNIAKINKQIEDIKKVDEKRLKDEYQRLVNGLARSGSTR- 293

Query:   836 TDVVLANPVLPDEILQ 851
              D   ++PVLP++++Q
Sbjct:   294 ADETTSDPVLPNDVIQ 309

 Score = 404 (147.3 bits), Expect = 1.1e-73, Sum P(3) = 1.1e-73
 Identities = 76/182 (41%), Positives = 118/182 (64%)

Query:   240 DISSKPAPSMISEAYRYIFSTE---EHLKTRLRVQQVVQESPATFLKDISSKVCIERKPL 296
             D+  +  P  I +A  +I       ++LK+RL+ Q ++ ESP  FL+ +     I  + L
Sbjct:   306 DVIQEAVPGNIRKAEHFISLLRRVVDYLKSRLKSQMLLSESPLAFLQGLYHATQISSRTL 365

Query:   297 RFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPV 356
             RFC+ RL+SLLRTL I ++  FS + +I   ATLV +Y  GF II+EP+  +     + +
Sbjct:   366 RFCSSRLSSLLRTLRINDVNQFSGISLIADFATLVGTYNNGFLIIIEPYYQRQNNTYDQI 425

Query:   357 LYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLP 416
               FCCLD+S+ +KP+FD++++VVITSGTLSPLD+Y K+LNF+P ++   +M+L R C+ P
Sbjct:   426 FQFCCLDASIGMKPIFDKYRSVVITSGTLSPLDIYTKMLNFRPTVVERLTMSLNRNCICP 485

Query:   417 MV 418
              +
Sbjct:   486 CI 487

 Score = 321 (118.1 bits), Expect = 2.1e-67, Sum P(2) = 2.1e-67
 Identities = 71/127 (55%), Positives = 85/127 (66%)

Query:   424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             M   I+DL V+FPY YIYPEQY+YMV LK++LD  G C+LEMPSGTGKT SLLSLI +Y 
Sbjct:     1 MKFYIEDLLVYFPYSYIYPEQYSYMVALKRSLDNGGPCILEMPSGTGKTVSLLSLISSYQ 60

Query:   484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMT-GLVLSSRKNLCIHS 541
               +P    KL+YCSRTVPEIE+  EE  R+  Y      EE   T  + +SSR+NLCI  
Sbjct:    61 VKNPS--IKLIYCSRTVPEIEQATEEARRVLQYRNSEMGEESPKTLCMSMSSRRNLCIQP 118

Query:   542 EF-ETRD 547
                E RD
Sbjct:   119 RVSEERD 125

 Score = 240 (89.5 bits), Expect = 3.4e-103, Sum P(3) = 3.4e-103
 Identities = 52/111 (46%), Positives = 74/111 (66%)

Query:   821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
             ARL E LRD    RE + +  + +         +++GK+DYGIMIFADKR+ R DKR+KL
Sbjct:   628 ARL-EFLRDRYQIRENEFLTFDAMRTASQCVGRVIRGKSDYGIMIFADKRYNRLDKRNKL 686

Query:   876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
             P+WI ++      NLST+ A+ LSK +LR+M QPF+RE+ LG +L SL+ +
Sbjct:   687 PQWILQFCQPQHLNLSTDMAISLSKTFLREMGQPFSREEQLGKSLWSLEHV 737

 Score = 228 (85.3 bits), Expect = 3.4e-103, Sum P(3) = 3.4e-103
 Identities = 46/125 (36%), Positives = 78/125 (62%)

Query:   564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
             C+ P  ++   +  + + + F+ R D +V+RNYG LLV+++ +VPDG++CFFTSY Y+E 
Sbjct:   482 CICPC-ILTRGSDQISISTKFDVRSDTAVVRNYGALLVEVSAIVPDGIICFFTSYSYMEQ 540

Query:   624 VVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVD-GRCHSLTSSSVRDRHK 682
             +V+ W + G+++N+   KL+F+ET D  +S +++ +   K  D GR   L S +   R K
Sbjct:   541 IVSVWNEMGLLNNILTNKLIFVETSDPAES-ALALQNYKKACDSGRGAVLLSVA---RGK 596

Query:   683 AGENI 687
               E I
Sbjct:   597 VSEGI 601

 Score = 170 (64.9 bits), Expect = 4.2e-97, Sum P(3) = 4.2e-97
 Identities = 37/120 (30%), Positives = 66/120 (55%)

Query:   477 SLIVAYMNAHPLDV-TKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRK 535
             S+++      PLD+ TK+L    TV  +E++   L          N       ++     
Sbjct:   446 SVVITSGTLSPLDIYTKMLNFRPTV--VERLTMSL----------NRNCICPCILTRGSD 493

Query:   536 NLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRN 595
              + I ++F+ R D +V+RNYG LLV+++ +VPDG++CFFTSY Y+E +    +++ ++ N
Sbjct:   494 QISISTKFDVRSDTAVVRNYGALLVEVSAIVPDGIICFFTSYSYMEQIVSVWNEMGLLNN 553


>ASPGD|ASPL0000055138 [details] [associations]
            symbol:AN9436 species:162425 "Emericella nidulans"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0010525 "regulation of
            transposition, RNA-mediated" evidence=IEA] [GO:0000019 "regulation
            of mitotic recombination" evidence=IEA] [GO:0070816
            "phosphorylation of RNA polymerase II C-terminal domain"
            evidence=IEA] [GO:0000717 "nucleotide-excision repair, DNA duplex
            unwinding" evidence=IEA] [GO:0033683 "nucleotide-excision repair,
            DNA incision" evidence=IEA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0003684 "damaged DNA
            binding" evidence=IEA] [GO:0043141 "ATP-dependent 5'-3' DNA
            helicase activity" evidence=IEA] [GO:0005675 "holo TFIIH complex"
            evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000439 "core
            TFIIH complex" evidence=IEA] [GO:0000112 "nucleotide-excision
            repair factor 3 complex" evidence=IEA] InterPro:IPR001945
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
            Pfam:PF13307 PRINTS:PR00852 PROSITE:PS51193 SMART:SM00488
            SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
            EMBL:BN001308 GO:GO:0003677 GO:GO:0004003 GO:GO:0006289
            TIGRFAMs:TIGR00604 OMA:KDVDGKC EnsemblFungi:CADANIAT00001938
            Uniprot:C8VRA9
        Length = 791

 Score = 649 (233.5 bits), Expect = 8.0e-102, Sum P(3) = 8.0e-102
 Identities = 116/241 (48%), Positives = 170/241 (70%)

Query:     1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
             V +E+ G +VD RC SLT+  V+++ + GE++ +C ++E  D +     + PGV+++  L
Sbjct:   120 VKREKSGTVVDARCRSLTAGFVKEKKEKGEDVELCVYHENLDLLEPHNLVPPGVFTLDGL 179

Query:    61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
                G +   CPYF AR+ + +  +++YSYHYLLDPKIA  VSKE ++  +VVFDEAHNID
Sbjct:   180 LNYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKEFSKDCIVVFDEAHNID 239

Query:   121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
             NVC++SLS+ I   ++ KA      LE  ++++K +D+ KL  EY +LVEGLR+A+ AR+
Sbjct:   240 NVCIESLSIDITEDSLRKATRGANNLERKIQDVKSSDAEKLNNEYMKLVEGLREAEQARD 299

Query:   181 TDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKD 240
              D  ++NPVLPD++L+E VPGNIR AEHFV FLKRFIEYLKTR++V   + E+P +FL  
Sbjct:   300 EDQFISNPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPLSFLNH 359

Query:   241 I 241
             +
Sbjct:   360 V 360

 Score = 504 (182.5 bits), Expect = 1.7e-78, Sum P(3) = 1.7e-78
 Identities = 98/182 (53%), Positives = 129/182 (70%)

Query:   240 DISSKPAPSMISEAYRYIFSTE---EHLKTRLRVQQVVQESPATFLKDISSKVCIERKPL 296
             D+  +  P  I  A  ++   +   E+LKTR++V   + E+P +FL  +     IERKPL
Sbjct:   312 DLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPLSFLNHVKELTFIERKPL 371

Query:   297 RFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPV 356
             RFCAERL SL+RTLE+ N+ D+  L  +   ATLVS+Y KGF +I+EPF  +A TVPNPV
Sbjct:   372 RFCAERLTSLVRTLELINIEDYQPLQEVATFATLVSTYDKGFLLILEPFESEAATVPNPV 431

Query:   357 LYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLP 416
             L+F CLD+++AIKPVFDRF +VVITSGTLSPL+MYPK+L F  V+  S+SMTLAR   LP
Sbjct:   432 LHFTCLDAAIAIKPVFDRFSSVVITSGTLSPLEMYPKMLGFTTVMQESYSMTLARRSFLP 491

Query:   417 MV 418
             M+
Sbjct:   492 MI 493

 Score = 494 (179.0 bits), Expect = 3.8e-76, Sum P(2) = 3.8e-76
 Identities = 88/197 (44%), Positives = 136/197 (69%)

Query:   655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK 714
             SV +E+ G +VD RC SLT+  V+++ + GE++ +C ++E  D +     + PGV+++  
Sbjct:   119 SVKREKSGTVVDARCRSLTAGFVKEKKEKGEDVELCVYHENLDLLEPHNLVPPGVFTLDG 178

Query:   715 LKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
             L   G +   CPYF AR+ + +  +++YSYHYLLDPKIA  VSKE ++  +VVFDEAHNI
Sbjct:   179 LLNYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKEFSKDCIVVFDEAHNI 238

Query:   775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
             DNVC++SLS+ I   ++ KA      LE  ++++K +D+ KL  EY +LVEGLR+A+ AR
Sbjct:   239 DNVCIESLSIDITEDSLRKATRGANNLERKIQDVKSSDAEKLNNEYMKLVEGLREAEQAR 298

Query:   835 ETDVVLANPVLPDEILQ 851
             + D  ++NPVLPD++L+
Sbjct:   299 DEDQFISNPVLPDDLLK 315

 Score = 348 (127.6 bits), Expect = 3.8e-76, Sum P(2) = 3.8e-76
 Identities = 72/132 (54%), Positives = 89/132 (67%)

Query:   424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             M   IDDLPV FPY  IYPEQYAYM +LKK LDA GHC+LEMPSGTGKT +LLSLIVAY 
Sbjct:     1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVTLLSLIVAYQ 60

Query:   484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDY---YIKHNEEINMTGLVLSSRKNLCIH 540
               +P +  KL+YCSRT+ EIEK + EL  L  +    + + E+    GL  +SRKNLC+H
Sbjct:    61 QHYP-EHRKLIYCSRTMSEIEKALAELRELMKFRSEQLGYTEDFRALGL--TSRKNLCLH 117

Query:   541 SEFETRDDISVI 552
                +     +V+
Sbjct:   118 PSVKREKSGTVV 129

 Score = 202 (76.2 bits), Expect = 8.0e-102, Sum P(3) = 8.0e-102
 Identities = 49/111 (44%), Positives = 69/111 (62%)

Query:   821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
             ARL E LR+    RE D +  + +         +L+GK DYGIM+ AD+RF +  KR++L
Sbjct:   634 ARL-EFLRENYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFQK--KRNQL 690

Query:   876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
             PKWI + L ++ TNLST+ AV  +K +LR MAQPF  +D  G++  SL  L
Sbjct:   691 PKWISQALLESETNLSTDMAVATAKNFLRTMAQPFKAKDQEGISTWSLADL 741

 Score = 197 (74.4 bits), Expect = 8.0e-102, Sum P(3) = 8.0e-102
 Identities = 33/74 (44%), Positives = 53/74 (71%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             + S F+ R+D  V+RNYG ++++ + + PDGVV FF SYLY+ES+++ W   GI+D++  
Sbjct:   503 ISSSFQIRNDPGVVRNYGNIVLEFSRITPDGVVVFFPSYLYMESIISMWQGMGILDSIWN 562

Query:   640 RKLLFIETQDALDS 653
              KL+ +ET DA +S
Sbjct:   563 YKLILVETPDAQES 576

 Score = 142 (55.0 bits), Expect = 4.8e-96, Sum P(3) = 4.8e-96
 Identities = 28/67 (41%), Positives = 43/67 (64%)

Query:   539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISV---IRN 595
             I S F+ R+D  V+RNYG ++++ + + PDGVV FF SYLY+ES+      + +   I N
Sbjct:   503 ISSSFQIRNDPGVVRNYGNIVLEFSRITPDGVVVFFPSYLYMESIISMWQGMGILDSIWN 562

Query:   596 YGQLLVD 602
             Y  +LV+
Sbjct:   563 YKLILVE 569


>CGD|CAL0002854 [details] [associations]
            symbol:RAD3 species:5476 "Candida albicans" [GO:0003678 "DNA
            helicase activity" evidence=IDA] [GO:0005675 "holo TFIIH complex"
            evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000439 "core
            TFIIH complex" evidence=IEA] [GO:0000112 "nucleotide-excision
            repair factor 3 complex" evidence=IEA] [GO:0003684 "damaged DNA
            binding" evidence=IEA] [GO:0043141 "ATP-dependent 5'-3' DNA
            helicase activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
            helicase activity" evidence=IEA] [GO:0010525 "regulation of
            transposition, RNA-mediated" evidence=IEA] [GO:0000019 "regulation
            of mitotic recombination" evidence=IEA] [GO:0070816
            "phosphorylation of RNA polymerase II C-terminal domain"
            evidence=IEA] [GO:0000717 "nucleotide-excision repair, DNA duplex
            unwinding" evidence=IEA] [GO:0033683 "nucleotide-excision repair,
            DNA incision" evidence=IEA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=IEA] InterPro:IPR001945
            InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
            PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
            CGD:CAL0002854 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003677 GO:GO:0004003 EMBL:AACQ01000024 GO:GO:0003678
            GO:GO:0006289 eggNOG:COG1199 TIGRFAMs:TIGR00604 KO:K10844
            RefSeq:XP_720409.1 RefSeq:XP_888639.1 ProteinModelPortal:Q5AFE9
            STRING:Q5AFE9 GeneID:3638014 GeneID:3704106 KEGG:cal:CaO19.7119
            KEGG:cal:CaO19_7119 Uniprot:Q5AFE9
        Length = 765

 Score = 627 (225.8 bits), Expect = 5.3e-101, Sum P(3) = 5.3e-101
 Identities = 127/291 (43%), Positives = 187/291 (64%)

Query:     1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP----VCDFYEKFDAVGREAPLAPGVYS 56
             +SKER G +VD +C  +T+  ++++ + G  +P    +C F+EK   +     + PGVYS
Sbjct:   120 ISKERKGVVVDEKCRRITNGQLKEKIEKG--VPTEDSLCSFHEKLYDLEPHNLVPPGVYS 177

Query:    57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
                L +  +E G CPYF  R+ I    I++YSYHYLLDPKIA  VS+EL++ S+V+FDEA
Sbjct:   178 FDALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEA 237

Query:   117 HNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQ 176
             HNIDNVC++SLS+ +   T++KA      L   +++MK  DS KL+ EY +LVEGLR A+
Sbjct:   238 HNIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAE 297

Query:   177 SARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPAT 236
              AR+ ++ +ANPVLP ++L E +PGNIR  EHF+ FLKRFIEYLKTR++V  V+ E+P +
Sbjct:   298 IARDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTS 357

Query:   237 FLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISS 287
             FL+ +  K    +  +  R+     E L   +R  +V +      LKDI++
Sbjct:   358 FLQHL--KELTYIERKPLRFC---SERLSLLVRTLEVTEIDDFNALKDIAT 403

 Score = 502 (181.8 bits), Expect = 1.1e-80, Sum P(3) = 1.1e-80
 Identities = 98/197 (49%), Positives = 139/197 (70%)

Query:   225 RVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTE---EHLKTRLRVQQVVQESPATF 281
             R Q++   +P    +D+  +  P  I +   +I   +   E+LKTR++V  V+ E+P +F
Sbjct:   300 RDQELFMANPV-LPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSF 358

Query:   282 LKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAII 341
             L+ +     IERKPLRFC+ERL+ L+RTLE+T + DF++L  I   ATLVS+Y  GF +I
Sbjct:   359 LQHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLI 418

Query:   342 VEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVI 401
             +EP+  +  TVPNP+L+F CLD+S+AIKPVFDRF +V+ITSGT+SPLDMYPK+L F+ VI
Sbjct:   419 LEPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVI 478

Query:   402 MHSFSMTLARPCLLPMV 418
               S++MTLAR   LPM+
Sbjct:   479 QESYAMTLARRSFLPMI 495

 Score = 469 (170.2 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 108/260 (41%), Positives = 157/260 (60%)

Query:   655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP----VCDFYEKFDAVGREAPLAPGVY 710
             ++SKER G +VD +C  +T+  ++++ + G  +P    +C F+EK   +     + PGVY
Sbjct:   119 TISKERKGVVVDEKCRRITNGQLKEKIEKG--VPTEDSLCSFHEKLYDLEPHNLVPPGVY 176

Query:   711 SITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDE 770
             S   L +  +E G CPYF  R+ I    I++YSYHYLLDPKIA  VS+EL++ S+V+FDE
Sbjct:   177 SFDALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDE 236

Query:   771 AHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDA 830
             AHNIDNVC++SLS+ +   T++KA      L   +++MK  DS KL+ EY +LVEGLR A
Sbjct:   237 AHNIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQA 296

Query:   831 QSARETDVVLANPVLP----DEILQGKTDYGIMIFAD-KRFARSDK-RSKLPKWIQEYLT 884
             + AR+ ++ +ANPVLP    DE + G    G    A  KRF    K R K+   I E  T
Sbjct:   297 EIARDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPT 356

Query:   885 DNLTNLSTEEAVQLSKRWLR 904
               L +L  +E   + ++ LR
Sbjct:   357 SFLQHL--KELTYIERKPLR 374

 Score = 344 (126.2 bits), Expect = 1.1e-61, Sum P(3) = 1.1e-61
 Identities = 81/165 (49%), Positives = 103/165 (62%)

Query:   424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             M   IDDLPV FPY  IYPEQY+YM ++KK LD  G+C+LEMPSGTGKT SLLSL VAY 
Sbjct:     1 MKFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60

Query:   484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSE 542
               +P +  K++YCSRT+ EIEK + EL +L ++      E+ +  GL L+SRKNLC+H  
Sbjct:    61 MHYP-EHRKIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPT 119

Query:   543 F-ETRDDISV------IRNYGQLLVDIACVVP-DGVVCFFTSYLY 579
               + R  + V      I N GQL   I   VP +  +C F   LY
Sbjct:   120 ISKERKGVVVDEKCRRITN-GQLKEKIEKGVPTEDSLCSFHEKLY 163

 Score = 215 (80.7 bits), Expect = 5.3e-101, Sum P(3) = 5.3e-101
 Identities = 47/109 (43%), Positives = 69/109 (63%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             + S FE R+D SV+RNYG LL++ A + PDG+V FF SYLY+ES+++ W   G++D + K
Sbjct:   505 ISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLYMESIISMWQSMGVLDEVWK 564

Query:   640 RKLLFIETQDALDSRSVSKERDGKIV-DGRCHSLTSSSVRDRHKAGENI 687
              KL+ +ET DA ++ S++ E   K   +GR   L S +   R K  E I
Sbjct:   565 HKLILVETPDAQET-SLALETYRKACSNGRGAVLLSVA---RGKVSEGI 609

 Score = 204 (76.9 bits), Expect = 5.3e-101, Sum P(3) = 5.3e-101
 Identities = 47/111 (42%), Positives = 73/111 (65%)

Query:   821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
             ARL E +RD    +E D +  + +         +L+GK DYGIM+ AD+RFAR  K+++L
Sbjct:   636 ARL-EFMRDHFQIKENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFAR--KKNQL 692

Query:   876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
             PKWI + L D+ TNLST+ A+  +K++LR +AQP   +D  GV++ +++QL
Sbjct:   693 PKWIAQALNDSDTNLSTDMALATAKKFLRSLAQPTNPKDSEGVSIWNIEQL 743

 Score = 154 (59.3 bits), Expect = 1.4e-94, Sum P(3) = 1.4e-94
 Identities = 29/65 (44%), Positives = 41/65 (63%)

Query:   529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRD 588
             +V      + I S FE R+D SV+RNYG LL++ A + PDG+V FF SYLY+ES+     
Sbjct:   495 IVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLYMESIISMWQ 554

Query:   589 DISVI 593
              + V+
Sbjct:   555 SMGVL 559


>UNIPROTKB|Q5AFE9 [details] [associations]
            symbol:RAD3 "Putative uncharacterized protein RAD3"
            species:237561 "Candida albicans SC5314" [GO:0003678 "DNA helicase
            activity" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
            evidence=IDA] InterPro:IPR001945 InterPro:IPR002464
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
            Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 CGD:CAL0002854 INTERPRO:IPR013020
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004003
            EMBL:AACQ01000024 GO:GO:0003678 GO:GO:0006289 eggNOG:COG1199
            TIGRFAMs:TIGR00604 KO:K10844 RefSeq:XP_720409.1 RefSeq:XP_888639.1
            ProteinModelPortal:Q5AFE9 STRING:Q5AFE9 GeneID:3638014
            GeneID:3704106 KEGG:cal:CaO19.7119 KEGG:cal:CaO19_7119
            Uniprot:Q5AFE9
        Length = 765

 Score = 627 (225.8 bits), Expect = 5.3e-101, Sum P(3) = 5.3e-101
 Identities = 127/291 (43%), Positives = 187/291 (64%)

Query:     1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP----VCDFYEKFDAVGREAPLAPGVYS 56
             +SKER G +VD +C  +T+  ++++ + G  +P    +C F+EK   +     + PGVYS
Sbjct:   120 ISKERKGVVVDEKCRRITNGQLKEKIEKG--VPTEDSLCSFHEKLYDLEPHNLVPPGVYS 177

Query:    57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
                L +  +E G CPYF  R+ I    I++YSYHYLLDPKIA  VS+EL++ S+V+FDEA
Sbjct:   178 FDALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEA 237

Query:   117 HNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQ 176
             HNIDNVC++SLS+ +   T++KA      L   +++MK  DS KL+ EY +LVEGLR A+
Sbjct:   238 HNIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAE 297

Query:   177 SARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPAT 236
              AR+ ++ +ANPVLP ++L E +PGNIR  EHF+ FLKRFIEYLKTR++V  V+ E+P +
Sbjct:   298 IARDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTS 357

Query:   237 FLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISS 287
             FL+ +  K    +  +  R+     E L   +R  +V +      LKDI++
Sbjct:   358 FLQHL--KELTYIERKPLRFC---SERLSLLVRTLEVTEIDDFNALKDIAT 403

 Score = 502 (181.8 bits), Expect = 1.1e-80, Sum P(3) = 1.1e-80
 Identities = 98/197 (49%), Positives = 139/197 (70%)

Query:   225 RVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTE---EHLKTRLRVQQVVQESPATF 281
             R Q++   +P    +D+  +  P  I +   +I   +   E+LKTR++V  V+ E+P +F
Sbjct:   300 RDQELFMANPV-LPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSF 358

Query:   282 LKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAII 341
             L+ +     IERKPLRFC+ERL+ L+RTLE+T + DF++L  I   ATLVS+Y  GF +I
Sbjct:   359 LQHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLI 418

Query:   342 VEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVI 401
             +EP+  +  TVPNP+L+F CLD+S+AIKPVFDRF +V+ITSGT+SPLDMYPK+L F+ VI
Sbjct:   419 LEPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVI 478

Query:   402 MHSFSMTLARPCLLPMV 418
               S++MTLAR   LPM+
Sbjct:   479 QESYAMTLARRSFLPMI 495

 Score = 469 (170.2 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 108/260 (41%), Positives = 157/260 (60%)

Query:   655 SVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP----VCDFYEKFDAVGREAPLAPGVY 710
             ++SKER G +VD +C  +T+  ++++ + G  +P    +C F+EK   +     + PGVY
Sbjct:   119 TISKERKGVVVDEKCRRITNGQLKEKIEKG--VPTEDSLCSFHEKLYDLEPHNLVPPGVY 176

Query:   711 SITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDE 770
             S   L +  +E G CPYF  R+ I    I++YSYHYLLDPKIA  VS+EL++ S+V+FDE
Sbjct:   177 SFDALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDE 236

Query:   771 AHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDA 830
             AHNIDNVC++SLS+ +   T++KA      L   +++MK  DS KL+ EY +LVEGLR A
Sbjct:   237 AHNIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQA 296

Query:   831 QSARETDVVLANPVLP----DEILQGKTDYGIMIFAD-KRFARSDK-RSKLPKWIQEYLT 884
             + AR+ ++ +ANPVLP    DE + G    G    A  KRF    K R K+   I E  T
Sbjct:   297 EIARDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPT 356

Query:   885 DNLTNLSTEEAVQLSKRWLR 904
               L +L  +E   + ++ LR
Sbjct:   357 SFLQHL--KELTYIERKPLR 374

 Score = 344 (126.2 bits), Expect = 1.1e-61, Sum P(3) = 1.1e-61
 Identities = 81/165 (49%), Positives = 103/165 (62%)

Query:   424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             M   IDDLPV FPY  IYPEQY+YM ++KK LD  G+C+LEMPSGTGKT SLLSL VAY 
Sbjct:     1 MKFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60

Query:   484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI-NMTGLVLSSRKNLCIHSE 542
               +P +  K++YCSRT+ EIEK + EL +L ++      E+ +  GL L+SRKNLC+H  
Sbjct:    61 MHYP-EHRKIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPT 119

Query:   543 F-ETRDDISV------IRNYGQLLVDIACVVP-DGVVCFFTSYLY 579
               + R  + V      I N GQL   I   VP +  +C F   LY
Sbjct:   120 ISKERKGVVVDEKCRRITN-GQLKEKIEKGVPTEDSLCSFHEKLY 163

 Score = 215 (80.7 bits), Expect = 5.3e-101, Sum P(3) = 5.3e-101
 Identities = 47/109 (43%), Positives = 69/109 (63%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             + S FE R+D SV+RNYG LL++ A + PDG+V FF SYLY+ES+++ W   G++D + K
Sbjct:   505 ISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLYMESIISMWQSMGVLDEVWK 564

Query:   640 RKLLFIETQDALDSRSVSKERDGKIV-DGRCHSLTSSSVRDRHKAGENI 687
              KL+ +ET DA ++ S++ E   K   +GR   L S +   R K  E I
Sbjct:   565 HKLILVETPDAQET-SLALETYRKACSNGRGAVLLSVA---RGKVSEGI 609

 Score = 204 (76.9 bits), Expect = 5.3e-101, Sum P(3) = 5.3e-101
 Identities = 47/111 (42%), Positives = 73/111 (65%)

Query:   821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
             ARL E +RD    +E D +  + +         +L+GK DYGIM+ AD+RFAR  K+++L
Sbjct:   636 ARL-EFMRDHFQIKENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFAR--KKNQL 692

Query:   876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQL 926
             PKWI + L D+ TNLST+ A+  +K++LR +AQP   +D  GV++ +++QL
Sbjct:   693 PKWIAQALNDSDTNLSTDMALATAKKFLRSLAQPTNPKDSEGVSIWNIEQL 743

 Score = 154 (59.3 bits), Expect = 1.4e-94, Sum P(3) = 1.4e-94
 Identities = 29/65 (44%), Positives = 41/65 (63%)

Query:   529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRD 588
             +V      + I S FE R+D SV+RNYG LL++ A + PDG+V FF SYLY+ES+     
Sbjct:   495 IVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLYMESIISMWQ 554

Query:   589 DISVI 593
              + V+
Sbjct:   555 SMGVL 559


>UNIPROTKB|K7EIT8 [details] [associations]
            symbol:ERCC2 "TFIIH basal transcription factor complex
            helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR002464
            InterPro:IPR006554 InterPro:IPR010614 InterPro:IPR010643
            InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 PROSITE:PS00690
            PROSITE:PS51193 SMART:SM00488 INTERPRO:IPR013020 TIGRFAMs:TIGR00604
            EMBL:L47234 HGNC:HGNC:3434 Ensembl:ENST00000586131 Uniprot:K7EIT8
        Length = 292

 Score = 662 (238.1 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
 Identities = 123/196 (62%), Positives = 158/196 (80%)

Query:   656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
             V+  R GK VDG+CHSLT+S VR +++   ++P C FYE+FDA GRE PL  G+Y++  L
Sbjct:    97 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 156

Query:   716 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
             K +GR  G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct:   157 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 216

Query:   776 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 835
             NVC+DS+SV + RRT+++  GN++TL+ T+  +KE D  +LR+EY RLVEGLR+A +ARE
Sbjct:   217 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 276

Query:   836 TDVVLANPVLPDEILQ 851
             TD  LANPVLPDE+LQ
Sbjct:   277 TDAHLANPVLPDEVLQ 292

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 123/196 (62%), Positives = 158/196 (80%)

Query:     1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 60
             V+  R GK VDG+CHSLT+S VR +++   ++P C FYE+FDA GRE PL  G+Y++  L
Sbjct:    97 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 156

Query:    61 KEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
             K +GR  G CPYFLAR +I+HA +VVYSYHYLLDPKIA++VSKELAR +VVVFDEAHNID
Sbjct:   157 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 216

Query:   121 NVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE 180
             NVC+DS+SV + RRT+++  GN++TL+ T+  +KE D  +LR+EY RLVEGLR+A +ARE
Sbjct:   217 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 276

Query:   181 TDVVLANPVLPDEILQ 196
             TD  LANPVLPDE+LQ
Sbjct:   277 TDAHLANPVLPDEVLQ 292

 Score = 335 (123.0 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
 Identities = 66/96 (68%), Positives = 79/96 (82%)

Query:   448 MVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
             M ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY  A+PL+VTKL+YCSRTVPEIEKV+
Sbjct:     1 MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 60

Query:   508 EELARLFDYYIKHN-EEINMTGLVLSSRKNLCIHSE 542
             EEL +L ++Y K   E++   GL LSSRKNLCIH E
Sbjct:    61 EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 96

 Score = 38 (18.4 bits), Expect = 1.9e-30, Sum P(2) = 1.9e-30
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query:   631 QGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIP 688
             QG ++ LQK  L   ET +    R   + R  ++V+G     +++   D H A   +P
Sbjct:   236 QGNLETLQKTVLRIKETDE---QRLRDEYR--RLVEG-LREASAARETDAHLANPVLP 287


>TAIR|locus:2014525 [details] [associations]
            symbol:UVH6 "ULTRAVIOLET HYPERSENSITIVE 6" species:3702
            "Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
            [GO:0006139 "nucleobase-containing compound metabolic process"
            evidence=IEA] [GO:0006289 "nucleotide-excision repair"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
            anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
            on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0009408
            "response to heat" evidence=IMP] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0000394 "RNA splicing, via endonucleolytic
            cleavage and ligation" evidence=RCA] [GO:0000724 "double-strand
            break repair via homologous recombination" evidence=RCA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=RCA] [GO:0006457 "protein folding" evidence=RCA]
            [GO:0009644 "response to high light intensity" evidence=RCA]
            [GO:0010212 "response to ionizing radiation" evidence=RCA]
            [GO:0010286 "heat acclimation" evidence=RCA] [GO:0042542 "response
            to hydrogen peroxide" evidence=RCA] [GO:0043687 "post-translational
            protein modification" evidence=RCA] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=RCA]
            [GO:0009411 "response to UV" evidence=IMP] InterPro:IPR001945
            InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
            PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
            INTERPRO:IPR013020 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0005524 GO:GO:0005634 GO:GO:0009411 GO:GO:0006355
            GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
            GO:GO:0051539 GO:GO:0009408 GO:GO:0004003 GO:GO:0006289
            eggNOG:COG1199 TIGRFAMs:TIGR00604 EMBL:AY090788 EMBL:AF188623
            EMBL:AC005278 EMBL:AY062471 EMBL:AY090915 EMBL:BT010344
            IPI:IPI00543586 PIR:C86163 RefSeq:NP_171818.1 RefSeq:NP_849584.1
            UniGene:At.10863 ProteinModelPortal:Q8W4M7 SMR:Q8W4M7 IntAct:Q8W4M7
            STRING:Q8W4M7 PaxDb:Q8W4M7 PRIDE:Q8W4M7 EnsemblPlants:AT1G03190.1
            EnsemblPlants:AT1G03190.2 GeneID:839557 KEGG:ath:AT1G03190
            GeneFarm:4445 TAIR:At1g03190 HOGENOM:HOG000205390 InParanoid:Q8W4M7
            KO:K10844 OMA:KDVDGKC PhylomeDB:Q8W4M7 ProtClustDB:CLSN2679645
            Genevestigator:Q8W4M7 GermOnline:AT1G03190 Uniprot:Q8W4M7
        Length = 758

 Score = 582 (209.9 bits), Expect = 7.4e-96, Sum P(3) = 7.4e-96
 Identities = 120/288 (41%), Positives = 170/288 (59%)

Query:     2 SKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLK 61
             ++ RD   VD  C   T+S VR       N+ +CDF+E ++     A L PGVY++  L+
Sbjct:   124 AENRDS--VDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDLR 181

Query:    62 EMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDN 121
               G+  G CPYFLAR  I  A ++VYSY YLLDPK+A  +SKEL + SVVVFDEAHNIDN
Sbjct:   182 AFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNIDN 241

Query:   122 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARET 181
             VC+++LSV + R T+E A  N+  +   +   K  D+ +LR EY RLVEGL         
Sbjct:   242 VCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDLSGG 301

Query:   182 DVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDI 241
             D  LANP LP +IL+E VPGNIR AEHFV  L+R ++YL  RL  + V +ESP +F+  +
Sbjct:   302 DQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFVSSL 361

Query:   242 SSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKV 289
             +S+    +  +  ++ +   + L   L +    +  P   + D ++ V
Sbjct:   362 NSQAG--IEQKTLKFCYDRLQSLMLTLEITDTDEFLPIQTVCDFATLV 407

 Score = 455 (165.2 bits), Expect = 4.2e-75, Sum P(3) = 4.2e-75
 Identities = 85/182 (46%), Positives = 125/182 (68%)

Query:   240 DISSKPAPSMISEAYRYIFSTE---EHLKTRLRVQQVVQESPATFLKDISSKVCIERKPL 296
             DI  +  P  I  A  ++       ++L  RL  + V +ESP +F+  ++S+  IE+K L
Sbjct:   313 DILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFVSSLNSQAGIEQKTL 372

Query:   297 RFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPV 356
             +FC +RL SL+ TLEIT+  +F  +  +   ATLV +Y +GF+II+EP+ ++ P +P+P+
Sbjct:   373 KFCYDRLQSLMLTLEITDTDEFLPIQTVCDFATLVGTYARGFSIIIEPYDERMPHIPDPI 432

Query:   357 LYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLP 416
             L   C D+SLAIKPVFDRFQ+VVITSGTLSP+D+YP++LNF PV+  SF M++ R C+ P
Sbjct:   433 LQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFTPVVSRSFKMSMTRDCICP 492

Query:   417 MV 418
             MV
Sbjct:   493 MV 494

 Score = 454 (164.9 bits), Expect = 4.8e-56, Sum P(2) = 4.8e-56
 Identities = 97/215 (45%), Positives = 128/215 (59%)

Query:   637 LQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKF 696
             L  RK L + T+  L     ++ RD   VD  C   T+S VR       N+ +CDF+E +
Sbjct:   109 LSSRKNLCVNTK-VL----AAENRDS--VDAACRKRTASWVRALSTENPNVELCDFFENY 161

Query:   697 DAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVV 756
             +     A L PGVY++  L+  G+  G CPYFLAR  I  A ++VYSY YLLDPK+A  +
Sbjct:   162 EKAAENALLPPGVYTLEDLRAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFI 221

Query:   757 SKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKL 816
             SKEL + SVVVFDEAHNIDNVC+++LSV + R T+E A  N+  +   +   K  D+ +L
Sbjct:   222 SKELQKESVVVFDEAHNIDNVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRL 281

Query:   817 REEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
             R EY RLVEGL         D  LANP LP +IL+
Sbjct:   282 RAEYNRLVEGLALRGDLSGGDQWLANPALPHDILK 316

 Score = 363 (132.8 bits), Expect = 3.2e-64, Sum P(3) = 3.2e-64
 Identities = 76/157 (48%), Positives = 105/157 (66%)

Query:   428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP 487
             I+D+ V+FPY+ IYPEQY YMVELK+ALDAKGHCLLEMP+GTGKT +LLSLI +Y  + P
Sbjct:     5 IEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYRLSRP 64

Query:   488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSEF--- 543
                 KL+YC+RTV E+EK + EL  L DY ++H   +  +  L LSSRKNLC++++    
Sbjct:    65 DSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTKVLAA 124

Query:   544 ETRDDISVI--RNYGQLLVDIACVVPDGVVC-FFTSY 577
             E RD +     +     +  ++   P+  +C FF +Y
Sbjct:   125 ENRDSVDAACRKRTASWVRALSTENPNVELCDFFENY 161

 Score = 222 (83.2 bits), Expect = 7.4e-96, Sum P(3) = 7.4e-96
 Identities = 39/90 (43%), Positives = 64/90 (71%)

Query:   564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 623
             C+ P  V+   +  L + + F+ R D  V+RNYG+LLV++  +VPDGVVCFF SY Y++ 
Sbjct:   489 CICPM-VLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFVSYSYMDG 547

Query:   624 VVASWYDQGIIDNLQKRKLLFIETQDALDS 653
             ++A+W + GI+  + ++KL+FIETQD +++
Sbjct:   548 IIATWNETGILKEIMQQKLVFIETQDVVET 577

 Score = 200 (75.5 bits), Expect = 7.4e-96, Sum P(3) = 7.4e-96
 Identities = 38/79 (48%), Positives = 57/79 (72%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
             +++ K DYG+MIFADKR++R DKRSKLP WI  +L D   NLST+ A+ +++ +LR+MAQ
Sbjct:   667 VIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIAREFLRKMAQ 726

Query:   909 PFTREDMLG-VALLSLDQL 926
             P+ +   +G   LL+ + L
Sbjct:   727 PYDKAGTMGRKTLLTQEDL 745

 Score = 155 (59.6 bits), Expect = 8.1e-89, Sum P(3) = 8.1e-89
 Identities = 26/62 (41%), Positives = 43/62 (69%)

Query:   537 LCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNY 596
             L + ++F+ R D  V+RNYG+LLV++  +VPDGVVCFF SY Y++ +  T ++  +++  
Sbjct:   502 LPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFVSYSYMDGIIATWNETGILKEI 561

Query:   597 GQ 598
              Q
Sbjct:   562 MQ 563


>SGD|S000000973 [details] [associations]
            symbol:RAD3 "5' to 3' DNA helicase" species:4932
            "Saccharomyces cerevisiae" [GO:0000439 "core TFIIH complex"
            evidence=IDA] [GO:0005675 "holo TFIIH complex" evidence=IDA]
            [GO:0070816 "phosphorylation of RNA polymerase II C-terminal
            domain" evidence=IDA] [GO:0051539 "4 iron, 4 sulfur cluster
            binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
            acid anhydrides" evidence=IEA] [GO:0000990 "core RNA polymerase
            binding transcription factor activity" evidence=IC] [GO:0000112
            "nucleotide-excision repair factor 3 complex" evidence=IDA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0046872 "metal ion binding" evidence=IEA] [GO:0051536
            "iron-sulfur cluster binding" evidence=IEA] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=IEA] [GO:0006289
            "nucleotide-excision repair" evidence=IEA] [GO:0016818 "hydrolase
            activity, acting on acid anhydrides, in phosphorus-containing
            anhydrides" evidence=IEA] [GO:0010525 "regulation of transposition,
            RNA-mediated" evidence=IMP] [GO:0043141 "ATP-dependent 5'-3' DNA
            helicase activity" evidence=IDA] [GO:0000019 "regulation of mitotic
            recombination" evidence=IMP] [GO:0003684 "damaged DNA binding"
            evidence=IDA] [GO:0033683 "nucleotide-excision repair, DNA
            incision" evidence=IDA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
            process" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=IDA] InterPro:IPR001945
            InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
            PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
            SGD:S000000973 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0046872
            GO:GO:0003684 GO:GO:0051539 GO:GO:0006366 EMBL:BK006939 EMBL:U18922
            RefSeq:NP_011098.3 GeneID:856918 KEGG:sce:YER171W GO:GO:0070816
            GO:GO:0005675 eggNOG:COG1199 TIGRFAMs:TIGR00604
            HOGENOM:HOG000205390 KO:K10844 OMA:KDVDGKC GO:GO:0033683
            GO:GO:0043141 GeneTree:ENSGT00550000075092 GO:GO:0000439
            GO:GO:0000112 GO:GO:0010525 GO:GO:0000019 OrthoDB:EOG4G1QQH
            EMBL:X02368 EMBL:K03293 PIR:A23308 RefSeq:NP_011102.3
            ProteinModelPortal:P06839 DIP:DIP-2425N IntAct:P06839
            MINT:MINT-617451 STRING:P06839 PaxDb:P06839 PeptideAtlas:P06839
            EnsemblFungi:YER171W GeneID:856922 KEGG:sce:YER175C CYGD:YER171w
            NextBio:983374 Genevestigator:P06839 GermOnline:YER171W
            Uniprot:P06839
        Length = 778

 Score = 592 (213.5 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
 Identities = 159/484 (32%), Positives = 253/484 (52%)

Query:     1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE--NIPVCDFYEKFDAVGREAPLAPGVYSIT 58
             VSKER G +VD +C  +T+   + + +     N+ +C+++E    +  E  L  GV+S  
Sbjct:   120 VSKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHENLYNIEVEDYLPKGVFSFE 179

Query:    59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
             KL +   E  LCPYF+ R+ I    I++YSYHYLLDPKIA  VS E+++ S+V+FDEAHN
Sbjct:   180 KLLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239

Query:   119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 178
             IDNVC++SLS+ +    + +A      L+  + E+++ DS KL++EY +LV+GL  A   
Sbjct:   240 IDNVCIESLSLDLTTDALRRATRGANALDERISEVRKVDSQKLQDEYEKLVQGLHSADIL 299

Query:   179 RETDV-VLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATF 237
              + +   +  PVLP ++L E +PGNIR AEHFV FLKR IEYLKTR++V  V+ E+P +F
Sbjct:   300 TDQEEPFVETPVLPQDLLTEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSF 359

Query:   238 LKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLR 297
             L+ +  K    +  +  R+     E L   +R  +V +    T LKDI++   +    + 
Sbjct:   360 LQHL--KQLTFIERKPLRFC---SERLSLLVRTLEVTEVEDFTALKDIATFATL----IS 410

Query:   298 FCAERLASLLRTLEITNLTDFSSLVVITHL-ATL-VSSYTKGFAIIVEPFSDKAPTVPNP 355
                E    ++   EI N    + ++  T L A++ +    + F+ ++      +P    P
Sbjct:   411 TYEEGFLLIIEPYEIENAAVPNPIMRFTCLDASIAIKPVFERFSSVIITSGTISPLDMYP 470

Query:   356 -VLYF-CCLDSSLAIKPVFDRFQTVVITSGTLS-PLDMYPKILNFQPVIMHSFSMTLARP 412
              +L F   L  S A+      F  ++IT G+    +    +I N  P I+ ++   L   
Sbjct:   471 RMLNFKTVLQKSYAMTLAKKSFLPMIITKGSDQVAISSRFEIRN-DPSIVRNYGSMLVE- 528

Query:   413 CLLPMVRENYAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKG-HCLLEMPSGTGK 471
                      +A  +  D + VFFP  Y+Y E    M +    LD    H L+ + +   +
Sbjct:   529 ---------FAK-ITPDGMVVFFP-SYLYMESIVSMWQTMGILDEVWKHKLILVETPDAQ 577

Query:   472 TTSL 475
              TSL
Sbjct:   578 ETSL 581

 Score = 405 (147.6 bits), Expect = 2.0e-64, Sum P(2) = 2.0e-64
 Identities = 79/198 (39%), Positives = 123/198 (62%)

Query:   656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGE--NIPVCDFYEKFDAVGREAPLAPGVYSIT 713
             VSKER G +VD +C  +T+   + + +     N+ +C+++E    +  E  L  GV+S  
Sbjct:   120 VSKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHENLYNIEVEDYLPKGVFSFE 179

Query:   714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
             KL +   E  LCPYF+ R+ I    I++YSYHYLLDPKIA  VS E+++ S+V+FDEAHN
Sbjct:   180 KLLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239

Query:   774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSA 833
             IDNVC++SLS+ +    + +A      L+  + E+++ DS KL++EY +LV+GL  A   
Sbjct:   240 IDNVCIESLSLDLTTDALRRATRGANALDERISEVRKVDSQKLQDEYEKLVQGLHSADIL 299

Query:   834 RETDV-VLANPVLPDEIL 850
              + +   +  PVLP ++L
Sbjct:   300 TDQEEPFVETPVLPQDLL 317

 Score = 334 (122.6 bits), Expect = 2.0e-64, Sum P(2) = 2.0e-64
 Identities = 68/120 (56%), Positives = 83/120 (69%)

Query:   424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             M   IDDLPV FPY  IYPEQY YM ++KK LD  G+ +LEMPSGTGKT SLLSL +AY 
Sbjct:     1 MKFYIDDLPVLFPYPKIYPEQYNYMCDIKKTLDVGGNSILEMPSGTGKTVSLLSLTIAYQ 60

Query:   484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKH-NEEINMTGLVLSSRKNLCIHSE 542
               +P +  K++YCSRT+ EIEK + EL  L DY  K    + +  GL L+SRKNLC+H E
Sbjct:    61 MHYP-EHRKIIYCSRTMSEIEKALVELENLMDYRTKELGYQEDFRGLGLTSRKNLCLHPE 119

 Score = 214 (80.4 bits), Expect = 1.9e-59, Sum P(3) = 1.9e-59
 Identities = 48/109 (44%), Positives = 69/109 (63%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             + S FE R+D S++RNYG +LV+ A + PDG+V FF SYLY+ES+V+ W   GI+D + K
Sbjct:   506 ISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFPSYLYMESIVSMWQTMGILDEVWK 565

Query:   640 RKLLFIETQDALDSRSVSKERDGKIV-DGRCHSLTSSSVRDRHKAGENI 687
              KL+ +ET DA ++ S++ E   K   +GR   L S +   R K  E I
Sbjct:   566 HKLILVETPDAQET-SLALETYRKACSNGRGAILLSVA---RGKVSEGI 610

 Score = 195 (73.7 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
 Identities = 47/112 (41%), Positives = 71/112 (63%)

Query:   821 ARLVEGLRDAQSARETDVVLANPVLP-----DEILQGKTDYGIMIFADKRFARSDKRSKL 875
             ARL E +R+    RE D +  + +         +L+GK DYG+M+ AD+RF+R  KRS+L
Sbjct:   637 ARL-EFMRENYRIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFSR--KRSQL 693

Query:   876 PKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLL 927
             PKWI + L+D   NLST+ A+  +K++LR MAQP   +D  GV++ S + L+
Sbjct:   694 PKWIAQGLSDADLNLSTDMAISNTKQFLRTMAQPTDPKDQEGVSVWSYEDLI 745

 Score = 149 (57.5 bits), Expect = 1.2e-52, Sum P(3) = 1.2e-52
 Identities = 26/55 (47%), Positives = 38/55 (69%)

Query:   529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
             ++      + I S FE R+D S++RNYG +LV+ A + PDG+V FF SYLY+ES+
Sbjct:   496 IITKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVFFPSYLYMESI 550


>UNIPROTKB|K7EKF3 [details] [associations]
            symbol:ERCC2 "TFIIH basal transcription factor complex
            helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
            "nucleotide-excision repair" evidence=IEA] InterPro:IPR001945
            InterPro:IPR010643 Pfam:PF06777 PRINTS:PR00852 EMBL:L47234
            HGNC:HGNC:3434 Ensembl:ENST00000587376 Uniprot:K7EKF3
        Length = 202

 Score = 574 (207.1 bits), Expect = 5.0e-55, P = 5.0e-55
 Identities = 110/182 (60%), Positives = 141/182 (77%)

Query:   240 DISSKPAPSMISEAYRYI-FSTE--EHLKTRLRVQQVVQESPATFLKDISSKVCIERKPL 296
             ++  +  P  I  A  ++ F     E++K RLRVQ VVQESP  FL  ++ +VCI+RKPL
Sbjct:    21 EVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPL 80

Query:   297 RFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPV 356
             RFCAERL SLL TLEIT+L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NP+
Sbjct:    81 RFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPI 140

Query:   357 LYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLP 416
             L+F C+D+SLAIKPVF+RFQ+V+ITSGTLSPLD+YPKIL+F PV M +F+MTLAR CL P
Sbjct:   141 LHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCP 200

Query:   417 MV 418
             M+
Sbjct:   201 ML 202

 Score = 267 (99.0 bits), Expect = 6.4e-22, P = 6.4e-22
 Identities = 64/149 (42%), Positives = 85/149 (57%)

Query:   174 DAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQES 233
             +A +ARETD  LANPVLPDE+LQE VPG+IRTAEHF+GFL+R +EY+K RLRVQ VVQES
Sbjct:     2 EASAARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQES 61

Query:   234 PATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIER 293
             P  FL  ++ +    +  +  R+       L   L +  +   SP T L + ++ V    
Sbjct:    62 PPAFLSGLAQRVC--IQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYA 119

Query:   294 KPLRFCAERLASLLRTLEITN-LTDFSSL 321
             K      E      RT  I N +  FS +
Sbjct:   120 KGFTIIIEPFDD--RTPTIANPILHFSCM 146


>WB|WBGene00021759 [details] [associations]
            symbol:Y50D7A.11 species:6239 "Caenorhabditis elegans"
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
            [GO:0016818 "hydrolase activity, acting on acid anhydrides, in
            phosphorus-containing anhydrides" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] InterPro:IPR006554
            InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
            SMART:SM00488 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
            GO:GO:0003677 GO:GO:0040035 EMBL:FO081772 GO:GO:0004003
            eggNOG:COG1199 GeneTree:ENSGT00550000075092 RefSeq:NP_001022900.1
            UniGene:Cel.9728 ProteinModelPortal:Q7YZG6 SMR:Q7YZG6 PaxDb:Q7YZG6
            EnsemblMetazoa:Y50D7A.11 GeneID:3565352 KEGG:cel:CELE_Y50D7A.11
            UCSC:Y50D7A.11 CTD:3565352 WormBase:Y50D7A.11 HOGENOM:HOG000203646
            InParanoid:Q7YZG6 NextBio:956143 Uniprot:Q7YZG6
        Length = 197

 Score = 367 (134.2 bits), Expect = 4.1e-41, Sum P(2) = 4.1e-41
 Identities = 76/142 (53%), Positives = 102/142 (71%)

Query:   424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             M L ID L V FPY+Y+YPEQ  YM E+KKALDA+GH LLEMPSGTGKT SLLSL++AYM
Sbjct:     1 MQLDIDGLKVLFPYDYVYPEQVLYMKEVKKALDARGHGLLEMPSGTGKTVSLLSLVLAYM 60

Query:   484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN-EEINMTGLVLSSRKNLCIHSE 542
              ++P  + KL+YCSRT+PEIEK VEE+  L+DY+ K   + +    + +S+RKNLC++  
Sbjct:    61 ISYPDKLDKLVYCSRTIPEIEKCVEEMKVLYDYWEKETGQPVAKITVAMSARKNLCVN-- 118

Query:   543 FETRDDISVIRNYGQLLVDIAC 564
                 + ++ +R +G   VD AC
Sbjct:   119 ----EPVAALR-FGNT-VDSAC 134

 Score = 107 (42.7 bits), Expect = 4.1e-41, Sum P(2) = 4.1e-41
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query:   656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKL 715
             V+  R G  VD  C  LT+SS R +      +  CD++E F+A  +  P+  GV+++ K+
Sbjct:   121 VAALRFGNTVDSACQKLTASSARQKRAEDPTLEACDYFENFEA--KSVPMQNGVWNLVKI 178

Query:   716 KE 717
              E
Sbjct:   179 CE 180


>UNIPROTKB|B4E0F6 [details] [associations]
            symbol:ERCC2 "TFIIH basal transcription factor complex
            helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
            GO:GO:0005524 GO:GO:0003677 GO:GO:0004003 EMBL:L47234
            UniGene:Hs.487294 HGNC:HGNC:3434 ChiTaRS:ERCC2 EMBL:AK303358
            IPI:IPI01014366 SMR:B4E0F6 STRING:B4E0F6 Ensembl:ENST00000221481
            Ensembl:ENST00000591309 Uniprot:B4E0F6
        Length = 127

 Score = 424 (154.3 bits), Expect = 9.2e-39, P = 9.2e-39
 Identities = 81/120 (67%), Positives = 99/120 (82%)

Query:   424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             M L +D L V+FPY+YIYPEQ++YM ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY 
Sbjct:     1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60

Query:   484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN-EEINMTGLVLSSRKNLCIHSE 542
              A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K   E++   GL LSSRKNLCIH E
Sbjct:    61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120


>UNIPROTKB|I3LNA6 [details] [associations]
            symbol:I3LNA6 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0016817 "hydrolase activity, acting on acid anhydrides"
            evidence=IEA] InterPro:IPR014013 PROSITE:PS51193 GO:GO:0005634
            GO:GO:0006915 GO:GO:0043066 GO:GO:0043588 GO:GO:0006979
            GO:GO:0008283 GO:GO:0007568 GO:GO:0001701 GO:GO:0030198
            GO:GO:0040016 GO:GO:0009791 GO:GO:0060218 GO:GO:0035264
            GO:GO:0021510 GO:GO:0030282 GO:GO:0006289 GO:GO:0043388
            GO:GO:0009650 GO:GO:0035315 GO:GO:0043249 GO:GO:0032289
            GO:GO:0048820 GeneTree:ENSGT00550000075092 GO:GO:0016817
            Ensembl:ENSSSCT00000028846 OMA:QAYPLEV Uniprot:I3LNA6
        Length = 90

 Score = 330 (121.2 bits), Expect = 1.1e-28, P = 1.1e-28
 Identities = 61/83 (73%), Positives = 74/83 (89%)

Query:   424 MGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             M L +D L V+FPY+YIYPEQ++YM+ELK+ LDAKGH +LEMPSGTGKT SLL+LI+AY 
Sbjct:     1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60

Query:   484 NAHPLDVTKLLYCSRTVPEIEKV 506
              A+PL+VTKL+YCSRTVPEIEKV
Sbjct:    61 RAYPLEVTKLIYCSRTVPEIEKV 83


>UNIPROTKB|I3LAE6 [details] [associations]
            symbol:I3LAE6 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0006289 "nucleotide-excision repair" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR001945 InterPro:IPR010643 Pfam:PF06777 PRINTS:PR00852
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004003
            GO:GO:0006289 GeneTree:ENSGT00550000075092
            Ensembl:ENSSSCT00000025749 Uniprot:I3LAE6
        Length = 111

 Score = 314 (115.6 bits), Expect = 5.9e-27, P = 5.9e-27
 Identities = 59/93 (63%), Positives = 76/93 (81%)

Query:   299 CAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLY 358
             CAERL SLL TLEI +L DFS L ++ + ATLVS+Y KGF II+EPF D+ PT+ NPVL+
Sbjct:    14 CAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPVLH 73

Query:   359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMY 391
             F C+D+SLAIKPVF+RFQ+V+ITSG + PL ++
Sbjct:    74 FSCMDASLAIKPVFERFQSVIITSG-VRPLALH 105


>UNIPROTKB|K7ENL1 [details] [associations]
            symbol:ERCC2 "TFIIH basal transcription factor complex
            helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
            EMBL:L47234 HGNC:HGNC:3434 Ensembl:ENST00000586856 Uniprot:K7ENL1
        Length = 109

 Score = 201 (75.8 bits), Expect = 1.0e-24, Sum P(3) = 1.0e-24
 Identities = 39/59 (66%), Positives = 48/59 (81%)

Query:   485 AHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN-EEINMTGLVLSSRKNLCIHSE 542
             A+PL+VTKL+YCSRTVPEIEKV+EEL +L ++Y K   E++   GL LSSRKNLCIH E
Sbjct:    12 AYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 70

 Score = 101 (40.6 bits), Expect = 1.0e-24, Sum P(3) = 1.0e-24
 Identities = 20/39 (51%), Positives = 28/39 (71%)

Query:   656 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYE 694
             V+  R GK VDG+CHSLT+S VR +++   ++P C FYE
Sbjct:    71 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYE 109

 Score = 101 (40.6 bits), Expect = 0.00035, P = 0.00035
 Identities = 20/39 (51%), Positives = 28/39 (71%)

Query:     1 VSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYE 39
             V+  R GK VDG+CHSLT+S VR +++   ++P C FYE
Sbjct:    71 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYE 109

 Score = 40 (19.1 bits), Expect = 1.0e-24, Sum P(3) = 1.0e-24
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query:   448 MVELKKALDAKGHCL 462
             M ELK+ LDAK + L
Sbjct:     1 MRELKRTLDAKAYPL 15


>UNIPROTKB|I3LHB7 [details] [associations]
            symbol:ERCC2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR006555 Pfam:PF13307
            GO:GO:0005524 GO:GO:0003676 GO:GO:0008026
            GeneTree:ENSGT00550000075092 Ensembl:ENSSSCT00000032501 OMA:GGEGREM
            Uniprot:I3LHB7
        Length = 138

 Score = 276 (102.2 bits), Expect = 7.0e-23, P = 7.0e-23
 Identities = 51/89 (57%), Positives = 72/89 (80%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             + S FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES VA+WY+QGI++N+Q+
Sbjct:    29 ISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVAAWYEQGILENIQR 88

Query:   640 RKLLFIETQDALD-SRSVSKERDGKIVDG 667
              KLLFIETQD  + S ++ K ++  I+ G
Sbjct:    89 NKLLFIETQDGAETSVALEKYQEVGIIGG 117

 Score = 168 (64.2 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query:   537 LCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRN 595
             + I S+FETR+DI+VIRNYG LL++++ VVPDG+V FFTSY Y+ES      +  ++ N
Sbjct:    27 VAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVAAWYEQGILEN 85


>UNIPROTKB|B4GU19 [details] [associations]
            symbol:GL14463 "Regulator of telomere elongation helicase 1
            homolog" species:7234 "Drosophila persimilis" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
            "ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0010569 "regulation of double-strand break repair via
            homologous recombination" evidence=ISS] InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
            PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
            GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
            SMART:SM00487 GO:GO:0010569 TIGRFAMs:TIGR00604 KO:K11136
            OrthoDB:EOG4S4MX7 EMBL:CH479190 RefSeq:XP_002022098.1
            EnsemblMetazoa:FBtr0180078 GeneID:6596883 KEGG:dpe:Dper_GL14463
            FlyBase:FBgn0152068 Uniprot:B4GU19
        Length = 1009

 Score = 197 (74.4 bits), Expect = 8.7e-23, Sum P(4) = 8.7e-23
 Identities = 66/242 (27%), Positives = 116/242 (47%)

Query:    52 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 111
             P +  I  L  +G++L +CPY+ +++ +  A I    Y+YLLDPK       EL  ++++
Sbjct:   191 PSIMDIEDLVRVGQKLKMCPYYASKELVAQADITFMPYNYLLDPKARKANKIELG-NTII 249

Query:   112 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEG--TLKEMKEA--DSAK--LREEY 165
             + DEAHNI+ +C +S SV+I    +  A+ ++  +    T  E +EA  D  K    ++ 
Sbjct:   250 ILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHIMKVFTSGESQEAGGDEPKDFTLDDL 309

Query:   166 ARLVEGLRDAQSARETDVVLANPV----LPDEILQEVVP------GNIRTAEHFVGFLKR 215
               L E L + + A +  VV+ NP      P  ++ E++       GN  T    V  L +
Sbjct:   310 TLLKEMLLELEKAIDA-VVVDNPTDGTTYPASLMYELLGKANFTYGNCAT---IVALLDK 365

Query:   216 FIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQ 275
              ++YL    +   + +    T L D+ +      I  A +    ++ HL  ++ VQ  V+
Sbjct:   366 LVQYLMVASQHMTIRKGGTFTMLSDLLT------IVFANKENIMSKVHLSFKVHVQ--VE 417

Query:   276 ES 277
             ES
Sbjct:   418 ES 419

 Score = 183 (69.5 bits), Expect = 2.8e-16, Sum P(3) = 2.8e-16
 Identities = 45/143 (31%), Positives = 77/143 (53%)

Query:   707 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 766
             P +  I  L  +G++L +CPY+ +++ +  A I    Y+YLLDPK       EL  ++++
Sbjct:   191 PSIMDIEDLVRVGQKLKMCPYYASKELVAQADITFMPYNYLLDPKARKANKIELG-NTII 249

Query:   767 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEG--TLKEMKEA--DSAK--LREEY 820
             + DEAHNI+ +C +S SV+I    +  A+ ++  +    T  E +EA  D  K    ++ 
Sbjct:   250 ILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHIMKVFTSGESQEAGGDEPKDFTLDDL 309

Query:   821 ARLVEGLRDAQSARETDVVLANP 843
               L E L + + A +  VV+ NP
Sbjct:   310 TLLKEMLLELEKAIDA-VVVDNP 331

 Score = 120 (47.3 bits), Expect = 8.7e-23, Sum P(4) = 8.7e-23
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L S F+ RD+   I + GQ ++++A +VPDG++ FF SY  L   V +W   G+  ++  
Sbjct:   527 LISNFKNRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKCVDAWQASGLWADISC 586

Query:   640 RKLLFIE 646
             +K +F+E
Sbjct:   587 KKPIFVE 593

 Score = 91 (37.1 bits), Expect = 4.3e-18, Sum P(3) = 4.3e-18
 Identities = 24/94 (25%), Positives = 51/94 (54%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLS------SRKNLCIHSEF 543
             V  ++  S T+  ++ ++ ELA     ++++   ++ + + +        R+ L   S F
Sbjct:   474 VRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQSQVYVKIIGTGPDRQQLI--SNF 531

Query:   544 ETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 577
             + RD+   I + GQ ++++A +VPDG++ FF SY
Sbjct:   532 KNRDNPKYISSLGQTILNVARIVPDGLLVFFPSY 565

 Score = 88 (36.0 bits), Expect = 2.8e-16, Sum P(3) = 2.8e-16
 Identities = 27/76 (35%), Positives = 37/76 (48%)

Query:   467 SGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINM 526
             SG G   S L++ V    A+   V K++Y SRT  ++ + + EL        K     NM
Sbjct:    85 SGPGGDLSELAMTVG--QANNWGVPKVIYASRTHSQLNQAMREL--------KRTAYANM 134

Query:   527 TGLVLSSRKNLCIHSE 542
               +VL SR  LCIH E
Sbjct:   135 RSVVLGSRDQLCIHPE 150

 Score = 86 (35.3 bits), Expect = 4.5e-16, Sum P(3) = 4.5e-16
 Identities = 23/57 (40%), Positives = 34/57 (59%)

Query:   427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             +I  +PV FP+E  Y  Q  YM ++   L    + +LE P+GTGKT SLL   +A++
Sbjct:     5 VIAGIPVHFPFEP-YNVQRDYMEKVIICLRDGTNGVLESPTGTGKTLSLLCASLAWI 60

 Score = 71 (30.1 bits), Expect = 8.7e-23, Sum P(4) = 8.7e-23
 Identities = 19/70 (27%), Positives = 32/70 (45%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLS----TEEAVQLSKRWLR 904
             +++ + DYG ++  D RF  + +  +L KWI+ +L     +        E  Q  K    
Sbjct:   695 VIRHRNDYGAILLCDSRFQDASQVQQLSKWIRGHLGARPQSSPFGPIVRELRQFFKHAEE 754

Query:   905 QMAQPFTRED 914
              M QP  RE+
Sbjct:   755 TMKQPDVREE 764

 Score = 61 (26.5 bits), Expect = 8.7e-23, Sum P(4) = 8.7e-23
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query:   346 SDKAPTVPNPVLYFCCLDSSLAIKPVFD-RFQTVVITSGTLSPLDMYPKILNFQ-PVIMH 403
             S KA  + N    F C +    ++ + + + ++V++TSGTL+PL   P I     PV  H
Sbjct:   448 SSKAAKIVN----FWCFNPGFGMEQLLNTQVRSVILTSGTLAPLK--PLIAELAIPVAQH 501

 Score = 38 (18.4 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query:    22 VRDRHKAGENIPVCDFYEKFDAVGR-EAPLAPGVYSIT-KLKEMGR-ELG 68
             + D  + G+ + +C +Y   + V + +    P  Y +  K ++  + ELG
Sbjct:   196 IEDLVRVGQKLKMCPYYASKELVAQADITFMPYNYLLDPKARKANKIELG 245

 Score = 38 (18.4 bits), Expect = 0.00030, Sum P(4) = 0.00030
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query:   448 MVELKKALDAKGHCLLEMPS-GTGKTTSLLSLIVAYMN 484
             ++EL+KA+DA    +++ P+ GT    SL+  ++   N
Sbjct:   316 LLELEKAIDA---VVVDNPTDGTTYPASLMYELLGKAN 350


>UNIPROTKB|Q29FS3 [details] [associations]
            symbol:GA17940 "Regulator of telomere elongation helicase 1
            homolog" species:46245 "Drosophila pseudoobscura pseudoobscura"
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
            [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0010569 "regulation of double-strand break repair
            via homologous recombination" evidence=ISS] InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
            PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
            GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
            SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
            EMBL:CH379065 KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_001354453.2
            GeneID:4814338 KEGG:dpo:Dpse_GA17940 FlyBase:FBgn0077949
            InParanoid:Q29FS3 Uniprot:Q29FS3
        Length = 1009

 Score = 197 (74.4 bits), Expect = 8.7e-23, Sum P(4) = 8.7e-23
 Identities = 66/242 (27%), Positives = 116/242 (47%)

Query:    52 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 111
             P +  I  L  +G++L +CPY+ +++ +  A I    Y+YLLDPK       EL  ++++
Sbjct:   191 PSIMDIEDLVRVGQKLKMCPYYASKELVAQADITFMPYNYLLDPKARKANKIELG-NTII 249

Query:   112 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEG--TLKEMKEA--DSAK--LREEY 165
             + DEAHNI+ +C +S SV+I    +  A+ ++  +    T  E +EA  D  K    ++ 
Sbjct:   250 ILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHIMKVFTSGESQEAGGDEPKDFTLDDL 309

Query:   166 ARLVEGLRDAQSARETDVVLANPV----LPDEILQEVVP------GNIRTAEHFVGFLKR 215
               L E L + + A +  VV+ NP      P  ++ E++       GN  T    V  L +
Sbjct:   310 TLLKEMLLELEKAIDA-VVVDNPTDGTTYPASLMYELLGKANFTYGNCAT---IVALLDK 365

Query:   216 FIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQ 275
              ++YL    +   + +    T L D+ +      I  A +    ++ HL  ++ VQ  V+
Sbjct:   366 LVQYLMVASQHMTIRKGGTFTMLSDLLT------IVFANKENIMSKVHLSFKVHVQ--VE 417

Query:   276 ES 277
             ES
Sbjct:   418 ES 419

 Score = 183 (69.5 bits), Expect = 2.8e-16, Sum P(3) = 2.8e-16
 Identities = 45/143 (31%), Positives = 77/143 (53%)

Query:   707 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 766
             P +  I  L  +G++L +CPY+ +++ +  A I    Y+YLLDPK       EL  ++++
Sbjct:   191 PSIMDIEDLVRVGQKLKMCPYYASKELVAQADITFMPYNYLLDPKARKANKIELG-NTII 249

Query:   767 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEG--TLKEMKEA--DSAK--LREEY 820
             + DEAHNI+ +C +S SV+I    +  A+ ++  +    T  E +EA  D  K    ++ 
Sbjct:   250 ILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHIMKVFTSGESQEAGGDEPKDFTLDDL 309

Query:   821 ARLVEGLRDAQSARETDVVLANP 843
               L E L + + A +  VV+ NP
Sbjct:   310 TLLKEMLLELEKAIDA-VVVDNP 331

 Score = 120 (47.3 bits), Expect = 8.7e-23, Sum P(4) = 8.7e-23
 Identities = 24/67 (35%), Positives = 41/67 (61%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L S F+ RD+   I + GQ ++++A +VPDG++ FF SY  L   V +W   G+  ++  
Sbjct:   527 LISNFKNRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKCVDAWQASGLWADISC 586

Query:   640 RKLLFIE 646
             +K +F+E
Sbjct:   587 KKPIFVE 593

 Score = 91 (37.1 bits), Expect = 4.3e-18, Sum P(3) = 4.3e-18
 Identities = 24/94 (25%), Positives = 51/94 (54%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLS------SRKNLCIHSEF 543
             V  ++  S T+  ++ ++ ELA     ++++   ++ + + +        R+ L   S F
Sbjct:   474 VRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQSQVYVKIIGTGPDRQQLI--SNF 531

Query:   544 ETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 577
             + RD+   I + GQ ++++A +VPDG++ FF SY
Sbjct:   532 KNRDNPKYISSLGQTILNVARIVPDGLLVFFPSY 565

 Score = 88 (36.0 bits), Expect = 2.8e-16, Sum P(3) = 2.8e-16
 Identities = 27/76 (35%), Positives = 37/76 (48%)

Query:   467 SGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINM 526
             SG G   S L++ V    A+   V K++Y SRT  ++ + + EL        K     NM
Sbjct:    85 SGPGGDLSELAMTVG--QANNWGVPKVIYASRTHSQLNQAMREL--------KRTAYANM 134

Query:   527 TGLVLSSRKNLCIHSE 542
               +VL SR  LCIH E
Sbjct:   135 RSVVLGSRDQLCIHPE 150

 Score = 86 (35.3 bits), Expect = 4.5e-16, Sum P(3) = 4.5e-16
 Identities = 23/57 (40%), Positives = 34/57 (59%)

Query:   427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             +I  +PV FP+E  Y  Q  YM ++   L    + +LE P+GTGKT SLL   +A++
Sbjct:     5 VIAGIPVHFPFEP-YNVQRDYMEKVIICLRDGTNGVLESPTGTGKTLSLLCASLAWI 60

 Score = 71 (30.1 bits), Expect = 8.7e-23, Sum P(4) = 8.7e-23
 Identities = 19/70 (27%), Positives = 32/70 (45%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLS----TEEAVQLSKRWLR 904
             +++ + DYG ++  D RF  + +  +L KWI+ +L     +        E  Q  K    
Sbjct:   695 VIRHRNDYGAILLCDSRFQDASQVQQLSKWIRGHLGARPQSSPFGPIVRELRQFFKHAEE 754

Query:   905 QMAQPFTRED 914
              M QP  RE+
Sbjct:   755 TMKQPDVREE 764

 Score = 61 (26.5 bits), Expect = 8.7e-23, Sum P(4) = 8.7e-23
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query:   346 SDKAPTVPNPVLYFCCLDSSLAIKPVFD-RFQTVVITSGTLSPLDMYPKILNFQ-PVIMH 403
             S KA  + N    F C +    ++ + + + ++V++TSGTL+PL   P I     PV  H
Sbjct:   448 SSKAAKIVN----FWCFNPGFGMEQLLNTQVRSVILTSGTLAPLK--PLIAELAIPVAQH 501

 Score = 38 (18.4 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query:    22 VRDRHKAGENIPVCDFYEKFDAVGR-EAPLAPGVYSIT-KLKEMGR-ELG 68
             + D  + G+ + +C +Y   + V + +    P  Y +  K ++  + ELG
Sbjct:   196 IEDLVRVGQKLKMCPYYASKELVAQADITFMPYNYLLDPKARKANKIELG 245

 Score = 38 (18.4 bits), Expect = 0.00030, Sum P(4) = 0.00030
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query:   448 MVELKKALDAKGHCLLEMPS-GTGKTTSLLSLIVAYMN 484
             ++EL+KA+DA    +++ P+ GT    SL+  ++   N
Sbjct:   316 LLELEKAIDA---VVVDNPTDGTTYPASLMYELLGKAN 350


>ZFIN|ZDB-GENE-050306-11 [details] [associations]
            symbol:rtel1 "regulator of telomere elongation
            helicase 1" species:7955 "Danio rerio" [GO:0016818 "hydrolase
            activity, acting on acid anhydrides, in phosphorus-containing
            anhydrides" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
            metabolic process" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0016817
            "hydrolase activity, acting on acid anhydrides" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
            PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
            ZFIN:ZDB-GENE-050306-11 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
            GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 TIGRFAMs:TIGR00604
            GeneTree:ENSGT00530000063199 KO:K11136 CTD:51750 EMBL:BX004876
            IPI:IPI01016862 RefSeq:NP_001013328.2 UniGene:Dr.87074
            ProteinModelPortal:F1QNW3 Ensembl:ENSDART00000123445 GeneID:503732
            KEGG:dre:503732 NextBio:20866277 Bgee:F1QNW3 Uniprot:F1QNW3
        Length = 1177

 Score = 196 (74.1 bits), Expect = 1.9e-22, Sum P(4) = 1.9e-22
 Identities = 46/159 (28%), Positives = 79/159 (49%)

Query:    35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
             C FY   D    +  +   +  +  L + G++  +CPY+L+R    HA ++   Y+YLLD
Sbjct:   172 CIFYNNVDEKSTDKEIVNSILDVEDLVKTGKKQRVCPYYLSRSLKQHADVIFMPYNYLLD 231

Query:    95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
             PK     + EL + +VV+FDEAHN++ +C +S S  +    +  A+  + + L     ++
Sbjct:   232 PKSRRAHNIEL-KGAVVIFDEAHNVEKMCEESTSFDLTPHDLISAIEAVDRLLREQASDI 290

Query:   154 KEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPD 192
              +ADSA   E++   VE L        T +     +L D
Sbjct:   291 SKADSA---EDFN--VESLNSGLKMDITTIAKVKQILMD 324

 Score = 196 (74.1 bits), Expect = 2.1e-20, Sum P(4) = 2.1e-20
 Identities = 46/159 (28%), Positives = 79/159 (49%)

Query:   690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
             C FY   D    +  +   +  +  L + G++  +CPY+L+R    HA ++   Y+YLLD
Sbjct:   172 CIFYNNVDEKSTDKEIVNSILDVEDLVKTGKKQRVCPYYLSRSLKQHADVIFMPYNYLLD 231

Query:   750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
             PK     + EL + +VV+FDEAHN++ +C +S S  +    +  A+  + + L     ++
Sbjct:   232 PKSRRAHNIEL-KGAVVIFDEAHNVEKMCEESTSFDLTPHDLISAIEAVDRLLREQASDI 290

Query:   809 KEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPD 847
              +ADSA   E++   VE L        T +     +L D
Sbjct:   291 SKADSA---EDFN--VESLNSGLKMDITTIAKVKQILMD 324

 Score = 110 (43.8 bits), Expect = 1.9e-22, Sum P(4) = 1.9e-22
 Identities = 38/137 (27%), Positives = 61/137 (44%)

Query:   557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
             Q+ V I    PDGV         L + F+ R     + + G  LV+++ VVP G++ FF 
Sbjct:   509 QIFVSIIEKGPDGV--------QLSTAFDRRFVPENMSSMGNTLVNLSRVVPHGLLVFFP 560

Query:   617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSS 676
             SY  ++  +  W  +G  D ++  K +F+E +       V     GK+ D      +  +
Sbjct:   561 SYPVMDKTLEFWRAKGHADRIENVKPMFVEPRGKGTFTEVIDGYYGKVDDPNSSGGSFFA 620

Query:   677 VRDRHKAGENIPVCDFY 693
             V  R KA E +   D Y
Sbjct:   621 VC-RGKASEGLDFADTY 636

 Score = 84 (34.6 bits), Expect = 1.9e-22, Sum P(4) = 1.9e-22
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
             +++ + DYG +   D RF  +D R++LP W++ Y+
Sbjct:   697 VIRHREDYGAIFLCDHRFKSADARNQLPSWVRPYV 731

 Score = 82 (33.9 bits), Expect = 2.1e-20, Sum P(4) = 2.1e-20
 Identities = 21/57 (36%), Positives = 33/57 (57%)

Query:   426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
             + +  + V FP+   YP Q  YM ++ + L  K + +LE P+GTGKT  LL   +A+
Sbjct:     4 IKLKGINVDFPFTP-YPCQEDYMSKVIECLQKKVNGVLESPTGTGKTLCLLCSTLAW 59

 Score = 67 (28.6 bits), Expect = 2.1e-20, Sum P(4) = 2.1e-20
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query:   489 DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             D+ K++Y SRT  ++ +VV EL         +  +I     VL SR+ LCI+ E
Sbjct:   105 DIPKIIYASRTHSQLTQVVNELKNT-----SYRPKI----CVLGSREQLCINQE 149

 Score = 63 (27.2 bits), Expect = 1.1e-17, Sum P(4) = 1.1e-17
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query:   539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
             + + F+ R     + + G  LV+++ VVP G++ FF SY  ++   E
Sbjct:   524 LSTAFDRRFVPENMSSMGNTLVNLSRVVPHGLLVFFPSYPVMDKTLE 570

 Score = 59 (25.8 bits), Expect = 1.9e-22, Sum P(4) = 1.9e-22
 Identities = 37/185 (20%), Positives = 77/185 (41%)

Query:   220 LKTRLRVQQVVQESPATFLKDISSKPAPSM-ISEAYRYIFSTEE----HLKTRLRVQQVV 274
             + T  +V+Q++ +   T + D    PA +  I++   +IF   E    + KT+    + +
Sbjct:   312 ITTIAKVKQILMDLE-TAINDFEM-PANNQGITKPGSFIFELFEMANVNSKTKTETVEAM 369

Query:   275 QE-------SPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHL 327
             ++        P  FL     +   +   L F AE      ++    +L +F       H+
Sbjct:   370 EQITGYLAGRPGVFLNTSGLQKVADIIQLVFVAEPAEGSKKSQTGNSLKEFK-----VHI 424

Query:   328 ATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVF-DRFQTVVITSGTLS 386
                 S++ K    I + ++  +      VL + C     +++ +     + +++TSGTLS
Sbjct:   425 HPDNSNFKK--KQITDVWASSSTKKQGNVLSYWCFSPGFSMQELLRQEVRCIILTSGTLS 482

Query:   387 PLDMY 391
             PL  +
Sbjct:   483 PLSSF 487

 Score = 41 (19.5 bits), Expect = 2.1e-11, Sum P(3) = 2.1e-11
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query:   446 AYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPL 488
             A+M+EL++ L  +   L+     + KT   L+ ++A + A PL
Sbjct:   909 AFMMELRRCLSHENFKLIMEALQSYKTADNLNNLLATV-AEPL 950


>MGI|MGI:2139369 [details] [associations]
            symbol:Rtel1 "regulator of telomere elongation helicase 1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IMP]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=ISO] [GO:0004386 "helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=IDA] [GO:0006139 "nucleobase-containing compound
            metabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0010569 "regulation of double-strand break repair
            via homologous recombination" evidence=ISO] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
            acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity,
            acting on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
            [GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
            "4 iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
            PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 MGI:MGI:2139369
            INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
            GO:GO:0003677 GO:GO:0006281 GO:GO:0051539 GO:GO:0004003
            InterPro:IPR014001 SMART:SM00487 GO:GO:0000723 GO:GO:0010569
            eggNOG:COG1199 TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199
            KO:K11136 CTD:51750 EMBL:AY481619 EMBL:AY481620 EMBL:AY481621
            EMBL:AY481622 EMBL:AY481623 EMBL:AK173097 EMBL:AK145145
            EMBL:AL928965 EMBL:BC105578 EMBL:BC144977 EMBL:BC144978
            EMBL:BC145658 IPI:IPI00274165 IPI:IPI00467288 IPI:IPI00754466
            IPI:IPI00756345 IPI:IPI00756903 IPI:IPI00929860
            RefSeq:NP_001001882.3 RefSeq:NP_001160137.1 RefSeq:NP_001160138.1
            RefSeq:NP_001160139.1 RefSeq:NP_001160140.1 UniGene:Mm.11333
            ProteinModelPortal:Q0VGM9 SMR:Q0VGM9 STRING:Q0VGM9
            PhosphoSite:Q0VGM9 PRIDE:Q0VGM9 Ensembl:ENSMUST00000048608
            Ensembl:ENSMUST00000054622 Ensembl:ENSMUST00000098971
            Ensembl:ENSMUST00000108814 Ensembl:ENSMUST00000108815
            Ensembl:ENSMUST00000148252 GeneID:269400 KEGG:mmu:269400
            UCSC:uc008olu.2 UCSC:uc008olv.2 UCSC:uc008olw.2 UCSC:uc008olx.2
            UCSC:uc012cmk.1 UCSC:uc012cml.1 InParanoid:Q6H1L3 OMA:VLKMQFL
            ChiTaRS:RTEL1 NextBio:392832 Bgee:Q0VGM9 Genevestigator:Q0VGM9
            Uniprot:Q0VGM9
        Length = 1203

 Score = 185 (70.2 bits), Expect = 3.2e-22, Sum P(4) = 3.2e-22
 Identities = 51/174 (29%), Positives = 87/174 (50%)

Query:    35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
             C FY   +A   E  LA  +  I  L + G +  +CPY+L+R     A I+   Y+YLLD
Sbjct:   172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231

Query:    95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
              K     S +L + +VV+FDEAHN++ +C +S S  +  R +   +  I Q LE   ++ 
Sbjct:   232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287

Query:   154 KEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLP--DEILQEV-VPGNIR 204
             +     +L++E+  +V+      +    D+     +L   +E +  V +PG+ R
Sbjct:   288 RVTQQGELQQEF--IVDTSSSGLNMELEDIAKLKMILLRLEEAIDAVQLPGDDR 339

 Score = 183 (69.5 bits), Expect = 3.6e-19, Sum P(3) = 3.6e-19
 Identities = 43/132 (32%), Positives = 70/132 (53%)

Query:   690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
             C FY   +A   E  LA  +  I  L + G +  +CPY+L+R     A I+   Y+YLLD
Sbjct:   172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231

Query:   750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
              K     S +L + +VV+FDEAHN++ +C +S S  +  R +   +  I Q LE   ++ 
Sbjct:   232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287

Query:   809 KEADSAKLREEY 820
             +     +L++E+
Sbjct:   288 RVTQQGELQQEF 299

 Score = 110 (43.8 bits), Expect = 3.2e-22, Sum P(4) = 3.2e-22
 Identities = 39/135 (28%), Positives = 60/135 (44%)

Query:   557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
             QL V I    PDGV         L S ++ R     + + G+ L +IA VVP G++ FF 
Sbjct:   510 QLWVGIVPRGPDGV--------QLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFP 561

Query:   617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSS 676
             SY  +E  +  W  QG+   ++  K LF+E ++      V      ++     +  T  +
Sbjct:   562 SYPVMEKSLEFWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLA 621

Query:   677 VRDRHKAGENIPVCD 691
             V  R KA E +   D
Sbjct:   622 VC-RGKASEGLDFSD 635

 Score = 99 (39.9 bits), Expect = 3.6e-19, Sum P(3) = 3.6e-19
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query:   426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
             ++++ + V FP++  YP Q  YM ++ + L  K + +LE P+GTGKT  LL   +A+   
Sbjct:     4 VVLNGVTVDFPFQP-YPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQ- 61

Query:   486 HPLD-VTKLLYCSRTVPEI 503
             H  D V+ L    R   E+
Sbjct:    62 HLRDAVSSLKIAERVQGEL 80

 Score = 91 (37.1 bits), Expect = 3.2e-22, Sum P(4) = 3.2e-22
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLT--DNLTNLSTEEA 895
             +++ + DYG +   D RFA +D R++LP W++ YL   DN  ++  + A
Sbjct:   698 VIRHRHDYGAIFLCDHRFAYADARAQLPSWVRPYLKVYDNFGHVIRDVA 746

 Score = 74 (31.1 bits), Expect = 1.3e-16, Sum P(3) = 1.3e-16
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query:   489 DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
             D+ K++Y SRT  ++ +V+ EL          N        VL SR+ LCIH E + ++
Sbjct:   105 DIPKIIYASRTHSQLTQVIREL---------RNTAYRPKVCVLGSREQLCIHPEVKKQE 154

 Score = 73 (30.8 bits), Expect = 1.8e-18, Sum P(4) = 1.8e-18
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query:   528 GLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
             G+V      + + S ++ R     + + G+ L +IA VVP G++ FF SY  +E   E
Sbjct:   514 GIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVMEKSLE 571

 Score = 62 (26.9 bits), Expect = 3.2e-22, Sum P(4) = 3.2e-22
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query:   343 EPFSDKAPTVPNPVLYFCCLDSSLAIKP-VFDRFQTVVITSGTLSPLDMY 391
             + +S  A      VL + C   S +++  V    +T+++TSGTL+PL  +
Sbjct:   439 DAWSTTASRKQGKVLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSF 488

 Score = 46 (21.3 bits), Expect = 6.3e-08, Sum P(4) = 6.3e-08
 Identities = 19/71 (26%), Positives = 34/71 (47%)

Query:   219 YLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESP 278
             YL   ++ Q  +   P  +L D  S+ A S+  +    IF  E H      V+++ +ES 
Sbjct:   210 YLSRNMKQQADIIFMPYNYLLDAKSRKAHSIDLKGTVVIFD-EAH-----NVEKICEESA 263

Query:   279 ATFL--KDISS 287
             +  L  +D++S
Sbjct:   264 SFDLTPRDVAS 274

 Score = 37 (18.1 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query:   328 ATLVSSYTKGFAIIVEPFSDKAPTVP 353
             A L+   T G  + +E   D++PTVP
Sbjct:  1113 ADLMGLPTTGKDLELEGPRDESPTVP 1138

 Score = 37 (18.1 bits), Expect = 3.2e-05, Sum P(3) = 3.2e-05
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query:   485 AHPLDVTKLLYCSRTVPEIEKVVEELARLFD 515
             AH +D+   +        +EK+ EE A  FD
Sbjct:   237 AHSIDLKGTVVIFDEAHNVEKICEESAS-FD 266


>FB|FBgn0029798 [details] [associations]
            symbol:CG4078 species:7227 "Drosophila melanogaster"
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
            [GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0003677
            "DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
            SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
            GO:GO:0046872 GO:GO:0003677 EMBL:AE014298 GO:GO:0006281
            GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
            GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
            GeneTree:ENSGT00530000063199 KO:K11136 OMA:PFPPLKD
            OrthoDB:EOG4S4MX7 EMBL:BT021290 EMBL:EU217688 EMBL:EU217689
            EMBL:EU217690 EMBL:EU217691 EMBL:EU217692 EMBL:EU217693
            EMBL:EU217694 EMBL:EU217695 EMBL:EU217696 EMBL:EU217697
            EMBL:EU217698 EMBL:EU217699 RefSeq:NP_572254.1 UniGene:Dm.11709
            ProteinModelPortal:Q9W484 SMR:Q9W484 IntAct:Q9W484
            MINT:MINT-4080348 PaxDb:Q9W484 PRIDE:Q9W484
            EnsemblMetazoa:FBtr0070807 EnsemblMetazoa:FBtr0332398 GeneID:31497
            KEGG:dme:Dmel_CG4078 UCSC:CG4078-RA FlyBase:FBgn0029798
            InParanoid:Q9W484 PhylomeDB:Q9W484 GenomeRNAi:31497 NextBio:773915
            Bgee:Q9W484 Uniprot:Q9W484
        Length = 985

 Score = 194 (73.4 bits), Expect = 3.3e-22, Sum P(4) = 3.3e-22
 Identities = 60/225 (26%), Positives = 106/225 (47%)

Query:    35 CDFYEKFDAVGREAPL-APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
             C F  + ++      L  P +  I  L ++G+ L +CPYF +R+ +  A I    Y+YLL
Sbjct:   173 CSFQMRVESRKDHPDLRGPTIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLL 232

Query:    94 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL-----EG 148
             DPK       EL  +++V+ DEAHNI+ +C +S SV+I    +  A+ ++  +      G
Sbjct:   233 DPKARKANKIELG-NTIVILDEAHNIEKICEESASVQIKSSDVAMAIEDVTHIMQVFASG 291

Query:   149 TLKEMKEADSAK--LREEYARLVEGLRDAQSARETDVVLANPV----LPDEILQEVVP-- 200
               ++M   D  K    ++   L E L + + A +  +V+ N V     P  ++ E++   
Sbjct:   292 ESQDMA-GDEPKDFTLDDLTLLKEMLLELEKAIDA-IVVDNAVDGTTFPASMMYELLGKA 349

Query:   201 ----GNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDI 241
                 GN+ T    V  L + ++YL    +   + +    T L D+
Sbjct:   350 NFTYGNVAT---IVSLLDKLVQYLLVASQQMSIRKGGTFTLLSDL 391

 Score = 180 (68.4 bits), Expect = 9.8e-18, Sum P(3) = 9.8e-18
 Identities = 37/110 (33%), Positives = 61/110 (55%)

Query:   690 CDFYEKFDAVGREAPL-APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
             C F  + ++      L  P +  I  L ++G+ L +CPYF +R+ +  A I    Y+YLL
Sbjct:   173 CSFQMRVESRKDHPDLRGPTIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLL 232

Query:   749 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
             DPK       EL  +++V+ DEAHNI+ +C +S SV+I    +  A+ ++
Sbjct:   233 DPKARKANKIELG-NTIVILDEAHNIEKICEESASVQIKSSDVAMAIEDV 281

 Score = 115 (45.5 bits), Expect = 3.3e-22, Sum P(4) = 3.3e-22
 Identities = 25/80 (31%), Positives = 44/80 (55%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L S +  RD+   I + GQ ++++A +VPDG++ FF SY  L   V +W   G+  ++  
Sbjct:   526 LISNYANRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKCVDAWQASGLWADISC 585

Query:   640 RKLLFIETQDALDSRSVSKE 659
             +K +F+E +      S  +E
Sbjct:   586 KKPIFLEPRSKDQFTSTMEE 605

 Score = 103 (41.3 bits), Expect = 9.8e-18, Sum P(3) = 9.8e-18
 Identities = 25/57 (43%), Positives = 36/57 (63%)

Query:   427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             +I  +PV FP+E  YP Q AYM ++   L    + +LE P+GTGKT SLL   +A++
Sbjct:     5 LIAGIPVHFPFEP-YPVQRAYMEKVIHCLRDGTNGVLESPTGTGKTLSLLCSSLAWI 60

 Score = 86 (35.3 bits), Expect = 1.7e-17, Sum P(3) = 1.7e-17
 Identities = 23/94 (24%), Positives = 50/94 (53%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLS------SRKNLCIHSEF 543
             V  ++  S T+  ++ ++ ELA     ++++   ++ + + +        R+ L   S +
Sbjct:   473 VRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQSQVYVKIIGTGPDRQQLI--SNY 530

Query:   544 ETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 577
               RD+   I + GQ ++++A +VPDG++ FF SY
Sbjct:   531 ANRDNPKYISSLGQTILNVARIVPDGLLVFFPSY 564

 Score = 80 (33.2 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
 Identities = 33/101 (32%), Positives = 45/101 (44%)

Query:   443 EQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN-AHPLDVTKLLYCSRTVP 501
             E    MV+++KA D  G        G G     LS +   M  A+   V K++Y SRT  
Sbjct:    66 EHQKQMVKMEKA-DFSG-------LGGGAPGGDLSELAKTMGRANNWGVPKVIYASRTHS 117

Query:   502 EIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             ++ + + EL        K     NM  +VL SR  LCIH E
Sbjct:   118 QLTQAMREL--------KRTAYANMRSVVLGSRDQLCIHPE 150

 Score = 73 (30.8 bits), Expect = 3.3e-22, Sum P(4) = 3.3e-22
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTD 885
             +++ + DYG ++  D RF  + +  +L KWI+ +L D
Sbjct:   694 VIRHRNDYGAILLCDSRFKDASQVQQLSKWIRGHLGD 730

 Score = 61 (26.5 bits), Expect = 3.3e-22, Sum P(4) = 3.3e-22
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query:   356 VLYFCCLDSSLAIKPVFD-RFQTVVITSGTLSPLDMYPKILNFQ-PVIMH 403
             ++ F C +    ++ + + + ++V++TSGTL+PL   P I     PV  H
Sbjct:   453 IINFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLK--PLIAELAIPVAQH 500

 Score = 43 (20.2 bits), Expect = 0.00015, Sum P(4) = 0.00015
 Identities = 28/115 (24%), Positives = 49/115 (42%)

Query:   407 MTLARPCLLPMVRENYAMGLMIDD------LPVFFPYEYIYPEQYAY--MVELKKALDAK 458
             +TL +  LL +  E     +++D+       P    YE +    + Y  +  +   LD  
Sbjct:   309 LTLLKEMLLEL--EKAIDAIVVDNAVDGTTFPASMMYELLGKANFTYGNVATIVSLLDKL 366

Query:   459 GHCLL----EMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEE 509
                LL    +M    G T +LLS ++  + A+  DV   +Y S    ++  +VEE
Sbjct:   367 VQYLLVASQQMSIRKGGTFTLLSDLLTIVFANKEDVMSKVYASF---KVHVLVEE 418

 Score = 39 (18.8 bits), Expect = 2.8e-06, Sum P(4) = 2.8e-06
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query:    18 TSSSVRDRHKAGENIPVCDFYEKFDAVGR-EAPLAPGVYSIT-KLKEMGR-ELG 68
             T   + D  K G+ + +C ++   + V + +    P  Y +  K ++  + ELG
Sbjct:   192 TIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELG 245

 Score = 37 (18.1 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
 Identities = 17/58 (29%), Positives = 22/58 (37%)

Query:   340 IIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVIT--SGTLSPLDMYPKIL 395
             I VEP S +A   P     F     SL  +  F RF   ++   +GT         IL
Sbjct:   893 IKVEPSSSQAKEAPEERAAFLRELRSLVTQDQFRRFGKALLEYKNGTYESFQALMAIL 950


>UNIPROTKB|Q6H1L8 [details] [associations]
            symbol:Rtel1 "Regulator of telomere elongation helicase 1"
            species:10096 "Mus spretus" [GO:0000723 "telomere maintenance"
            evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0010569 "regulation of double-strand
            break repair via homologous recombination" evidence=ISS]
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
            PROSITE:PS51193 SMART:SM00488 SMART:SM00491 MGI:MGI:2139369
            INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
            GO:GO:0003677 GO:GO:0006281 GO:GO:0051539 GO:GO:0004003
            GO:GO:0000723 GO:GO:0010569 TIGRFAMs:TIGR00604 EMBL:AY481613
            EMBL:AY481614 EMBL:AY481615 EMBL:AY481616 EMBL:AY481617
            EMBL:AY530632 ProteinModelPortal:Q6H1L8 Uniprot:Q6H1L8
        Length = 1203

 Score = 185 (70.2 bits), Expect = 4.0e-22, Sum P(4) = 4.0e-22
 Identities = 51/174 (29%), Positives = 87/174 (50%)

Query:    35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
             C FY   +A   E  LA  +  I  L + G +  +CPY+L+R     A I+   Y+YLLD
Sbjct:   172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231

Query:    95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
              K     S +L + +VV+FDEAHN++ +C +S S  +  R +   +  I Q LE   ++ 
Sbjct:   232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287

Query:   154 KEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLP--DEILQEV-VPGNIR 204
             +     +L++E+  +V+      +    D+     +L   +E +  V +PG+ R
Sbjct:   288 RVTQQGELQQEF--IVDTSSSGLNMELEDIAKLKMILLRLEEAIDAVQLPGDDR 339

 Score = 183 (69.5 bits), Expect = 5.8e-19, Sum P(3) = 5.8e-19
 Identities = 43/132 (32%), Positives = 70/132 (53%)

Query:   690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
             C FY   +A   E  LA  +  I  L + G +  +CPY+L+R     A I+   Y+YLLD
Sbjct:   172 CHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD 231

Query:   750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
              K     S +L + +VV+FDEAHN++ +C +S S  +  R +   +  I Q LE   ++ 
Sbjct:   232 AKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLE---EQA 287

Query:   809 KEADSAKLREEY 820
             +     +L++E+
Sbjct:   288 RVTQQGELQQEF 299

 Score = 110 (43.8 bits), Expect = 4.0e-22, Sum P(4) = 4.0e-22
 Identities = 39/135 (28%), Positives = 60/135 (44%)

Query:   557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
             QL V I    PDGV         L S ++ R     + + G+ L +IA VVP G++ FF 
Sbjct:   510 QLWVGIVPRGPDGV--------QLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFP 561

Query:   617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSS 676
             SY  +E  +  W  QG+   ++  K LF+E ++      V      ++     +  T  +
Sbjct:   562 SYPVMEKSLEFWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLA 621

Query:   677 VRDRHKAGENIPVCD 691
             V  R KA E +   D
Sbjct:   622 VC-RGKASEGLDFSD 635

 Score = 98 (39.6 bits), Expect = 5.8e-19, Sum P(3) = 5.8e-19
 Identities = 26/79 (32%), Positives = 44/79 (55%)

Query:   426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
             ++++ + V FP++  YP Q  YM ++ + L  K + +LE P+GTGKT  LL   +A+   
Sbjct:     4 VVLNGVTVDFPFQP-YPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQ- 61

Query:   486 HPLD-VTKLLYCSRTVPEI 503
             H  D ++ L    R   E+
Sbjct:    62 HLRDAISSLKIAERVQGEL 80

 Score = 90 (36.7 bits), Expect = 4.0e-22, Sum P(4) = 4.0e-22
 Identities = 14/35 (40%), Positives = 24/35 (68%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
             +++ + DYG +   D RFA +D R++LP W++ YL
Sbjct:   698 VIRHRHDYGAIFLCDHRFAYADARAQLPSWVRPYL 732

 Score = 73 (30.8 bits), Expect = 2.2e-18, Sum P(4) = 2.2e-18
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query:   528 GLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
             G+V      + + S ++ R     + + G+ L +IA VVP G++ FF SY  +E   E
Sbjct:   514 GIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVMEKSLE 571

 Score = 69 (29.3 bits), Expect = 5.4e-16, Sum P(3) = 5.4e-16
 Identities = 19/59 (32%), Positives = 29/59 (49%)

Query:   489 DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
             D+ K++Y SRT  +  +V+ EL          N        VL SR+ LCIH E + ++
Sbjct:   105 DIPKIIYASRTHSQPTQVIREL---------RNTAYRPKVCVLGSREQLCIHPEVKKQE 154

 Score = 62 (26.9 bits), Expect = 4.0e-22, Sum P(4) = 4.0e-22
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query:   343 EPFSDKAPTVPNPVLYFCCLDSSLAIKP-VFDRFQTVVITSGTLSPLDMY 391
             + +S  A      VL + C   S +++  V    +T+++TSGTL+PL  +
Sbjct:   439 DAWSTTASRKQGKVLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSF 488

 Score = 46 (21.3 bits), Expect = 7.9e-08, Sum P(4) = 7.9e-08
 Identities = 19/71 (26%), Positives = 34/71 (47%)

Query:   219 YLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESP 278
             YL   ++ Q  +   P  +L D  S+ A S+  +    IF  E H      V+++ +ES 
Sbjct:   210 YLSRNMKQQADIIFMPYNYLLDAKSRKAHSIDLKGTVVIFD-EAH-----NVEKICEESA 263

Query:   279 ATFL--KDISS 287
             +  L  +D++S
Sbjct:   264 SFDLTPRDVAS 274

 Score = 37 (18.1 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query:   328 ATLVSSYTKGFAIIVEPFSDKAPTVP 353
             A L+   T G  + +E   D++PTVP
Sbjct:  1113 ADLMGLPTTGKDLELEGPRDESPTVP 1138

 Score = 37 (18.1 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query:   485 AHPLDVTKLLYCSRTVPEIEKVVEELARLFD 515
             AH +D+   +        +EK+ EE A  FD
Sbjct:   237 AHSIDLKGTVVIFDEAHNVEKICEESAS-FD 266


>UNIPROTKB|B4PZB4 [details] [associations]
            symbol:GE16425 "Regulator of telomere elongation helicase 1
            homolog" species:7245 "Drosophila yakuba" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
            "ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0010569 "regulation of double-strand break repair via
            homologous recombination" evidence=ISS] InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
            PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
            GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
            SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
            EMBL:CM000162 KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_002099973.1
            EnsemblMetazoa:FBtr0262943 GeneID:6524109 KEGG:dya:Dyak_GE16425
            FlyBase:FBgn0233951 Uniprot:B4PZB4
        Length = 985

 Score = 195 (73.7 bits), Expect = 4.1e-22, Sum P(4) = 4.1e-22
 Identities = 61/225 (27%), Positives = 106/225 (47%)

Query:    35 CDFYEKFDAVGREAPL-APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
             C F  + ++      L  P +  I  L ++G+ L +CPYF +R+ +  A I    Y+YLL
Sbjct:   173 CSFQMRVESRKDHPDLRGPSIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLL 232

Query:    94 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL-----EG 148
             DPK       EL  +++V+ DEAHNI+ +C +S SV+I    +  A+ ++  +      G
Sbjct:   233 DPKARKANKIELG-NTIVILDEAHNIEKICEESASVQIKSSDVAMAIEDVTHIMQVFASG 291

Query:   149 TLKEMKEADSAK--LREEYARLVEGLRDAQSARETDVVLANPV----LPDEILQEVVP-- 200
               ++M   D  K    ++   L E L + + A +  VV+ N V     P  ++ E++   
Sbjct:   292 ESQDMG-GDEPKDFTLDDLTLLKEMLLEFEKAIDA-VVVENAVEGTTFPASMMYELLGKA 349

Query:   201 ----GNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDI 241
                 GN+ T    V  L + ++YL    +   + +    T L D+
Sbjct:   350 NFTYGNVAT---IVSLLDKLVQYLLVASQQMTIRKGGTFTMLSDL 391

 Score = 182 (69.1 bits), Expect = 3.7e-18, Sum P(3) = 3.7e-18
 Identities = 37/110 (33%), Positives = 61/110 (55%)

Query:   690 CDFYEKFDAVGREAPL-APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
             C F  + ++      L  P +  I  L ++G+ L +CPYF +R+ +  A I    Y+YLL
Sbjct:   173 CSFQMRVESRKDHPDLRGPSIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLL 232

Query:   749 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
             DPK       EL  +++V+ DEAHNI+ +C +S SV+I    +  A+ ++
Sbjct:   233 DPKARKANKIELG-NTIVILDEAHNIEKICEESASVQIKSSDVAMAIEDV 281

 Score = 113 (44.8 bits), Expect = 4.1e-22, Sum P(4) = 4.1e-22
 Identities = 24/80 (30%), Positives = 44/80 (55%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L S +  RD+   I + GQ +++++ +VPDG++ FF SY  L   V +W   G+  ++  
Sbjct:   526 LISNYANRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNKCVDAWQASGLWADISV 585

Query:   640 RKLLFIETQDALDSRSVSKE 659
             +K +F+E +      S  +E
Sbjct:   586 KKPIFLEPRSKDQFTSTMEE 605

 Score = 105 (42.0 bits), Expect = 3.7e-18, Sum P(3) = 3.7e-18
 Identities = 25/57 (43%), Positives = 37/57 (64%)

Query:   427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             +I  +PV FP+E  YP Q AYM ++ + L    + +LE P+GTGKT SLL   +A++
Sbjct:     5 LIAGIPVHFPFEP-YPVQRAYMEKVIQCLRDGTNGVLESPTGTGKTLSLLCSSLAWI 60

 Score = 83 (34.3 bits), Expect = 2.7e-17, Sum P(3) = 2.7e-17
 Identities = 22/94 (23%), Positives = 50/94 (53%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLS------SRKNLCIHSEF 543
             V  ++  S T+  ++ ++ ELA     ++++   ++ + + +        R+ L   S +
Sbjct:   473 VRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQSQVYVKIIGTGPDRQQLI--SNY 530

Query:   544 ETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 577
               RD+   I + GQ +++++ +VPDG++ FF SY
Sbjct:   531 ANRDNPKYISSLGQTILNVSRIVPDGLLVFFPSY 564

 Score = 80 (33.2 bits), Expect = 1.3e-15, Sum P(3) = 1.3e-15
 Identities = 33/101 (32%), Positives = 45/101 (44%)

Query:   443 EQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN-AHPLDVTKLLYCSRTVP 501
             E    MV+++KA D  G        G G     LS +   M  A+   V K++Y SRT  
Sbjct:    66 EHQQQMVKMEKA-DFTG-------LGGGAAGGDLSELAKTMGRANNWGVPKVIYASRTHS 117

Query:   502 EIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             ++ + + EL        K     NM  +VL SR  LCIH E
Sbjct:   118 QLTQAMREL--------KRTAYANMRSVVLGSRDQLCIHPE 150

 Score = 73 (30.8 bits), Expect = 4.1e-22, Sum P(4) = 4.1e-22
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTD 885
             +++ + DYG ++  D RF  + +  +L KWI+ +L D
Sbjct:   694 VIRHRNDYGAILLCDSRFKDASQVQQLSKWIRGHLGD 730

 Score = 61 (26.5 bits), Expect = 4.1e-22, Sum P(4) = 4.1e-22
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query:   356 VLYFCCLDSSLAIKPVFD-RFQTVVITSGTLSPLDMYPKILNFQ-PVIMH 403
             ++ F C +    ++ + + + ++V++TSGTL+PL   P I     PV  H
Sbjct:   453 IINFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLK--PLIAELAIPVAQH 500

 Score = 42 (19.8 bits), Expect = 0.00045, Sum P(4) = 0.00045
 Identities = 21/82 (25%), Positives = 36/82 (43%)

Query:   432 PVFFPYEYIYPEQYAY--MVELKKALDAKGHCLL----EMPSGTGKTTSLLSLIVAYMNA 485
             P    YE +    + Y  +  +   LD     LL    +M    G T ++LS ++  + A
Sbjct:   338 PASMMYELLGKANFTYGNVATIVSLLDKLVQYLLVASQQMTIRKGGTFTMLSDLLTIVFA 397

Query:   486 HPLDVTKLLYCSRTVP-EIEKV 506
             +  DV   +Y S  V  ++E+V
Sbjct:   398 NKEDVMSKVYASFKVHVQLEEV 419

 Score = 37 (18.1 bits), Expect = 6.9e-06, Sum P(4) = 6.9e-06
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query:    22 VRDRHKAGENIPVCDFYEKFDAVGR-EAPLAPGVYSIT-KLKEMGR-ELG 68
             + D  K G+ + +C ++   + V + +    P  Y +  K ++  + ELG
Sbjct:   196 IEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELG 245


>UNIPROTKB|B3NSW1 [details] [associations]
            symbol:GG18780 "Regulator of telomere elongation helicase 1
            homolog" species:7220 "Drosophila erecta" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
            "ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0010569 "regulation of double-strand break repair via
            homologous recombination" evidence=ISS] InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
            PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
            GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
            SMART:SM00487 GO:GO:0010569 TIGRFAMs:TIGR00604 EMBL:CH954180
            KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_001977003.1
            EnsemblMetazoa:FBtr0138834 GeneID:6550838 KEGG:der:Dere_GG18780
            FlyBase:FBgn0110988 Uniprot:B3NSW1
        Length = 985

 Score = 194 (73.4 bits), Expect = 6.6e-22, Sum P(4) = 6.6e-22
 Identities = 59/224 (26%), Positives = 103/224 (45%)

Query:    35 CDFYEKFDAVGREAPL-APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
             C F  + ++      L  P +  I  L ++G+ L +CPYF +R+ +  A I    Y+YLL
Sbjct:   173 CTFQMRVESRKDHPDLRGPSIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLL 232

Query:    94 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTL-----EG 148
             DPK       EL  +++V+ DEAHNI+ +C +S SV+I    +  A+ ++  +      G
Sbjct:   233 DPKARKANKIELG-NTIVILDEAHNIEKICEESASVQIKSSDVAMAIEDVTHIMQVFASG 291

Query:   149 TLKEMKEADSAK--LREEYARLVEGLRDAQSARETDVV---LANPVLPDEILQEVVP--- 200
               ++M   D  K    ++   L E L + + A +  VV         P  ++ E++    
Sbjct:   292 ESQDMA-GDEPKDFTLDDLTLLKEMLLELEKAIDAVVVDNAAEGTTFPASLMYELLGKAN 350

Query:   201 ---GNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDI 241
                GN+ T    V  L + ++YL    +   + +    T L D+
Sbjct:   351 FTYGNVAT---IVSLLDKLVQYLLVASQQMSIRKGGTFTMLSDL 391

 Score = 181 (68.8 bits), Expect = 4.7e-18, Sum P(3) = 4.7e-18
 Identities = 37/110 (33%), Positives = 61/110 (55%)

Query:   690 CDFYEKFDAVGREAPL-APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
             C F  + ++      L  P +  I  L ++G+ L +CPYF +R+ +  A I    Y+YLL
Sbjct:   173 CTFQMRVESRKDHPDLRGPSIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLL 232

Query:   749 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
             DPK       EL  +++V+ DEAHNI+ +C +S SV+I    +  A+ ++
Sbjct:   233 DPKARKANKIELG-NTIVILDEAHNIEKICEESASVQIKSSDVAMAIEDV 281

 Score = 112 (44.5 bits), Expect = 6.6e-22, Sum P(4) = 6.6e-22
 Identities = 24/80 (30%), Positives = 44/80 (55%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L S +  RD+   I + GQ +++++ +VPDG++ FF SY  L   V +W   G+  ++  
Sbjct:   526 LISNYANRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNKCVDAWQASGLWADISC 585

Query:   640 RKLLFIETQDALDSRSVSKE 659
             +K +F+E +      S  +E
Sbjct:   586 KKPIFLEPRSKDQFTSTMEE 605

 Score = 105 (42.0 bits), Expect = 4.7e-18, Sum P(3) = 4.7e-18
 Identities = 25/57 (43%), Positives = 37/57 (64%)

Query:   427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             +I  +PV FP+E  YP Q AYM ++ + L    + +LE P+GTGKT SLL   +A++
Sbjct:     5 LIAGIPVHFPFEP-YPVQRAYMEKVIQCLRDGTNGVLESPTGTGKTLSLLCSSLAWI 60

 Score = 83 (34.3 bits), Expect = 3.4e-17, Sum P(3) = 3.4e-17
 Identities = 22/94 (23%), Positives = 50/94 (53%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLS------SRKNLCIHSEF 543
             V  ++  S T+  ++ ++ ELA     ++++   ++ + + +        R+ L   S +
Sbjct:   473 VRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQSQVYVKIIGTGPDRQQLI--SNY 530

Query:   544 ETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 577
               RD+   I + GQ +++++ +VPDG++ FF SY
Sbjct:   531 ANRDNPKYISSLGQTILNVSRIVPDGLLVFFPSY 564

 Score = 80 (33.2 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
 Identities = 33/101 (32%), Positives = 46/101 (45%)

Query:   443 EQYAYMVELKKALDAKGHCLLEMPSG-TGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVP 501
             E    MV+++KA D  G     +  G TG   S L   +    A+   V K++Y SRT  
Sbjct:    66 EHQQQMVKIEKA-DFSG-----LAGGATGGELSDLGKTMG--RANNWGVPKVIYASRTHS 117

Query:   502 EIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             ++ + + EL        K     NM  +VL SR  LCIH E
Sbjct:   118 QLTQAMREL--------KRTAYANMRSVVLGSRDQLCIHPE 150

 Score = 73 (30.8 bits), Expect = 6.6e-22, Sum P(4) = 6.6e-22
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTD 885
             +++ + DYG ++  D RF  + +  +L KWI+ +L D
Sbjct:   694 VIRHRNDYGAILLCDSRFKDASQVQQLSKWIRGHLGD 730

 Score = 61 (26.5 bits), Expect = 6.6e-22, Sum P(4) = 6.6e-22
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query:   356 VLYFCCLDSSLAIKPVFD-RFQTVVITSGTLSPLDMYPKILNFQ-PVIMH 403
             ++ F C +    ++ + + + ++V++TSGTL+PL   P I     PV  H
Sbjct:   453 IINFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLK--PLIAELAIPVAQH 500

 Score = 41 (19.5 bits), Expect = 0.00071, Sum P(4) = 0.00071
 Identities = 22/87 (25%), Positives = 36/87 (41%)

Query:   417 MVRENYAMGLMIDDLPVFFPYEYIYPEQYAY--MVELKKALDAKGHCLL----EMPSGTG 470
             +V +N A G      P    YE +    + Y  +  +   LD     LL    +M    G
Sbjct:   326 VVVDNAAEGTTF---PASLMYELLGKANFTYGNVATIVSLLDKLVQYLLVASQQMSIRKG 382

Query:   471 KTTSLLSLIVAYMNAHPLDVTKLLYCS 497
              T ++LS ++  + A+  DV   +Y S
Sbjct:   383 GTFTMLSDLLTIVFANKQDVMSKVYAS 409

 Score = 38 (18.4 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
 Identities = 13/36 (36%), Positives = 15/36 (41%)

Query:   340 IIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRF 375
             I VEP S +A   P     F     SL  +  F RF
Sbjct:   893 IKVEPSSSQAKAAPEERADFLRALRSLVTQDQFRRF 928

 Score = 37 (18.1 bits), Expect = 8.8e-06, Sum P(4) = 8.8e-06
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query:    22 VRDRHKAGENIPVCDFYEKFDAVGR-EAPLAPGVYSIT-KLKEMGR-ELG 68
             + D  K G+ + +C ++   + V + +    P  Y +  K ++  + ELG
Sbjct:   196 IEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELG 245


>UNIPROTKB|B3MSG8 [details] [associations]
            symbol:GF20802 "Regulator of telomere elongation helicase 1
            homolog" species:7217 "Drosophila ananassae" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
            "ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0010569 "regulation of double-strand break repair via
            homologous recombination" evidence=ISS] InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
            PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
            GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
            SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
            EMBL:CH902622 KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_001964274.1
            EnsemblMetazoa:FBtr0125502 GeneID:6503494 KEGG:dan:Dana_GF20802
            FlyBase:FBgn0097808 InParanoid:B3MSG8 Uniprot:B3MSG8
        Length = 994

 Score = 189 (71.6 bits), Expect = 3.8e-21, Sum P(4) = 3.8e-21
 Identities = 61/245 (24%), Positives = 118/245 (48%)

Query:    52 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 111
             P +  I  L ++G++L +CPY+ +++ +  A I    Y+YLLDPK       EL  +++V
Sbjct:   191 PSIMDIEDLIKVGQKLKMCPYYASKELVPQADITFMPYNYLLDPKARKANKIELG-NTIV 249

Query:   112 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEMKE---ADSAK--LREEY 165
             + DEAHNI+ +C +S SV+I    +  A+ ++   ++    +  +    D  K    ++ 
Sbjct:   250 ILDEAHNIEKICEESASVQIKSSDVAIAIEDVTHIMKAFASDSPQDMAGDEPKDFTIDDL 309

Query:   166 ARLVEGLRDAQSARETDVVLANPV----LPDEILQEVVP------GNIRTAEHFVGFLKR 215
               L E L D + A +  V + NP+     P  ++ E++       GN+ T    V  L +
Sbjct:   310 MLLKEMLLDLEKAIDA-VAVDNPIDGATYPASMIYELLGKANFTYGNVAT---IVALLDK 365

Query:   216 FIEYLKTRLRVQQVVQESPA-TFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVV 274
              ++YL    + Q  +++  + T L D+ +    +  S   +   S + H++     Q   
Sbjct:   366 LVQYLMVASQQQMSLRKGGSFTLLSDLLTIVFANKESVMGKVHASFKVHVQVEESKQPQG 425

Query:   275 QESPA 279
             +++PA
Sbjct:   426 KQAPA 430

 Score = 172 (65.6 bits), Expect = 5.7e-17, Sum P(3) = 5.7e-17
 Identities = 32/92 (34%), Positives = 56/92 (60%)

Query:   707 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 766
             P +  I  L ++G++L +CPY+ +++ +  A I    Y+YLLDPK       EL  +++V
Sbjct:   191 PSIMDIEDLIKVGQKLKMCPYYASKELVPQADITFMPYNYLLDPKARKANKIELG-NTIV 249

Query:   767 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
             + DEAHNI+ +C +S SV+I    +  A+ ++
Sbjct:   250 ILDEAHNIEKICEESASVQIKSSDVAIAIEDV 281

 Score = 112 (44.5 bits), Expect = 3.8e-21, Sum P(4) = 3.8e-21
 Identities = 28/92 (30%), Positives = 48/92 (52%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L S +  RD+   I + GQ +++++ +VPDG++ FF SY  L   V +W   G+  ++  
Sbjct:   526 LISNYTNRDNPKYISSLGQTILNVSRLVPDGLLVFFPSYPMLNKCVDAWQASGLWADIAS 585

Query:   640 RKLLFIETQDALDSRSVSKERDGKIVD--GRC 669
             +K +F+E +      S  +E    I D  G C
Sbjct:   586 KKPIFLEPRGKDQFTSTMEEFYQAIRDSKGAC 617

 Score = 106 (42.4 bits), Expect = 5.7e-17, Sum P(3) = 5.7e-17
 Identities = 25/57 (43%), Positives = 37/57 (64%)

Query:   427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             +I  +PV FP+E  YP Q AYM ++ + L    + +LE P+GTGKT SLL   +A++
Sbjct:     5 LIAGIPVHFPFEP-YPVQRAYMEKVIQCLKDGTNGVLESPTGTGKTLSLLCSSLAWI 60

 Score = 87 (35.7 bits), Expect = 5.0e-15, Sum P(3) = 5.0e-15
 Identities = 31/100 (31%), Positives = 41/100 (41%)

Query:   443 EQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPE 502
             E    M++L K  D  G        G G    L  L      A+   V K++Y SRT  +
Sbjct:    66 EHQQQMIKLDKGADLLG-------GGAGGGPELSDLAKTMGKANNWGVPKVIYASRTHSQ 118

Query:   503 IEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             + + + EL        K     NM  +VL SR  LCIH E
Sbjct:   119 LTQAMREL--------KRTAYSNMRSVVLGSRDQLCIHPE 150

 Score = 79 (32.9 bits), Expect = 8.3e-18, Sum P(4) = 8.3e-18
 Identities = 14/37 (37%), Positives = 25/37 (67%)

Query:   541 SEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 577
             S +  RD+   I + GQ +++++ +VPDG++ FF SY
Sbjct:   528 SNYTNRDNPKYISSLGQTILNVSRLVPDGLLVFFPSY 564

 Score = 71 (30.1 bits), Expect = 3.8e-21, Sum P(4) = 3.8e-21
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTD 885
             +++ + DYG ++  D RF  + +  +L KWI+ +L D
Sbjct:   694 VIRHRNDYGAILLCDSRFKDAAQVQQLSKWIRGHLGD 730

 Score = 61 (26.5 bits), Expect = 3.8e-21, Sum P(4) = 3.8e-21
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query:   356 VLYFCCLDSSLAIKPVFD-RFQTVVITSGTLSPLDMYPKILNFQ-PVIMH 403
             ++ F C +    ++ + + + ++V++TSGTL+PL   P I     PV  H
Sbjct:   453 IINFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLK--PLIAELAIPVAQH 500

 Score = 39 (18.8 bits), Expect = 9.1e-06, Sum P(4) = 9.1e-06
 Identities = 12/50 (24%), Positives = 24/50 (48%)

Query:    22 VRDRHKAGENIPVCDFYEKFDAVGR-EAPLAPGVYSIT-KLKEMGR-ELG 68
             + D  K G+ + +C +Y   + V + +    P  Y +  K ++  + ELG
Sbjct:   196 IEDLIKVGQKLKMCPYYASKELVPQADITFMPYNYLLDPKARKANKIELG 245


>UNIPROTKB|D4ACH4 [details] [associations]
            symbol:Rtel1 "Regulator of telomere elongation helicase 1"
            species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
            InterPro:IPR006935 InterPro:IPR010614 InterPro:IPR014013
            Pfam:PF04851 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
            IPI:IPI00781945 Ensembl:ENSRNOT00000029336 ArrayExpress:D4ACH4
            Uniprot:D4ACH4
        Length = 1165

 Score = 180 (68.4 bits), Expect = 4.8e-21, Sum P(4) = 4.8e-21
 Identities = 49/174 (28%), Positives = 87/174 (50%)

Query:    35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
             C FY   +    E  LA  +  I  L + G +  +CPY+L+R     A I+   Y+YLLD
Sbjct:   172 CHFYNNVEEKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLD 231

Query:    95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
              K     + +L + +VV+FDEAHN++ +C +S S  +  R +   +  I Q LE   ++ 
Sbjct:   232 AKSRKAHNIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEVINQVLE---EQA 287

Query:   154 KEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLP--DEILQEV-VPGNIR 204
             + A   +L++E+  +++      +    D+     +L   +E +  V +PG+ R
Sbjct:   288 RVAQHGELQQEF--IIDTSSSGLNMELEDIAKLKMILLHLEEAIDAVQLPGDDR 339

 Score = 179 (68.1 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
 Identities = 42/132 (31%), Positives = 70/132 (53%)

Query:   690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
             C FY   +    E  LA  +  I  L + G +  +CPY+L+R     A I+   Y+YLLD
Sbjct:   172 CHFYNNVEEKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLD 231

Query:   750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
              K     + +L + +VV+FDEAHN++ +C +S S  +  R +   +  I Q LE   ++ 
Sbjct:   232 AKSRKAHNIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEVINQVLE---EQA 287

Query:   809 KEADSAKLREEY 820
             + A   +L++E+
Sbjct:   288 RVAQHGELQQEF 299

 Score = 106 (42.4 bits), Expect = 4.8e-21, Sum P(4) = 4.8e-21
 Identities = 30/93 (32%), Positives = 47/93 (50%)

Query:   557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
             QL V +    PDGV         L S ++ R     + + G+ L +IA VVP G++ FF 
Sbjct:   510 QLWVGVIPRGPDGV--------QLSSAYDKRFSEECLSSLGKALGNIARVVPHGLLVFFP 561

Query:   617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
             SY  +E  +  W  QG+   ++  K LF+E ++
Sbjct:   562 SYPVMEKSLEFWQAQGMSKKVEALKPLFVEPRN 594

 Score = 99 (39.9 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query:   426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
             ++++ + V FP++  YP Q  YM ++ + L  K + +LE P+GTGKT  LL   +A+   
Sbjct:     4 VVLNGVTVDFPFQP-YPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWRE- 61

Query:   486 HPLD-VTKLLYCSRTVPEI 503
             H  D V+ L    R   E+
Sbjct:    62 HLRDAVSSLKIAERVQGEL 80

 Score = 88 (36.0 bits), Expect = 4.8e-21, Sum P(4) = 4.8e-21
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
             +++ + DYG +   D RFA +D R+ LP W++ YL
Sbjct:   698 VIRHRHDYGAIFLCDHRFAYADARAHLPSWVRPYL 732

 Score = 73 (30.8 bits), Expect = 8.0e-16, Sum P(3) = 8.0e-16
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query:   489 DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
             D+ K++Y SRT  ++ +V+ EL          N        VL SR+ LCIH E + ++
Sbjct:   105 DIPKIIYASRTHSQLTQVIGEL---------RNTSYRPKVCVLGSREQLCIHPEVKKQE 154

 Score = 70 (29.7 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
 Identities = 17/58 (29%), Positives = 30/58 (51%)

Query:   528 GLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
             G++      + + S ++ R     + + G+ L +IA VVP G++ FF SY  +E   E
Sbjct:   514 GVIPRGPDGVQLSSAYDKRFSEECLSSLGKALGNIARVVPHGLLVFFPSYPVMEKSLE 571

 Score = 62 (26.9 bits), Expect = 4.8e-21, Sum P(4) = 4.8e-21
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query:   343 EPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDR-FQTVVITSGTLSPLDMY 391
             + +S  A      VL + C   S +++ +  +  +T+++TSGTL+PL  +
Sbjct:   439 DAWSTTASRKQGKVLSYWCFSPSHSMRELVQQGVRTLILTSGTLAPLSSF 488

 Score = 45 (20.9 bits), Expect = 3.5e-07, Sum P(4) = 3.5e-07
 Identities = 19/71 (26%), Positives = 34/71 (47%)

Query:   219 YLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESP 278
             YL   L+ Q  +   P  +L D  S+ A ++  +    IF  E H      V+++ +ES 
Sbjct:   210 YLSRNLKQQADIIFMPYNYLLDAKSRKAHNIDLKGTVVIFD-EAH-----NVEKICEESA 263

Query:   279 ATFL--KDISS 287
             +  L  +D++S
Sbjct:   264 SFDLTPRDVAS 274

 Score = 43 (20.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query:   284 DISSKVCIERKPLRFCAE-RLASLLRTLE 311
             D  S VC+E +   F A+ R   LL  LE
Sbjct:   812 DSESSVCVEYEQQTFSAQKRPMGLLAALE 840

 Score = 39 (18.8 bits), Expect = 9.4e-05, Sum P(3) = 9.4e-05
 Identities = 14/61 (22%), Positives = 25/61 (40%)

Query:   485 AHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEE-INMTGLVLSSRKNLCIHSEF 543
             AH +D+   +        +EK+ EE A  FD   +     + +   VL  +  +  H E 
Sbjct:   237 AHNIDLKGTVVIFDEAHNVEKICEESAS-FDLTPRDVASGLEVINQVLEEQARVAQHGEL 295

Query:   544 E 544
             +
Sbjct:   296 Q 296


>UNIPROTKB|B0W9F4 [details] [associations]
            symbol:CPIJ003765 "Regulator of telomere elongation
            helicase 1 homolog" species:7176 "Culex quinquefasciatus"
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
            [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0010569 "regulation of double-strand break repair
            via homologous recombination" evidence=ISS] InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
            PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
            GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
            SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
            HOGENOM:HOG000007558 KO:K11136 OMA:PFPPLKD OrthoDB:EOG4S4MX7
            EMBL:DS231864 RefSeq:XP_001845338.1 ProteinModelPortal:B0W9F4
            EnsemblMetazoa:CPIJ003765-RA GeneID:6035102
            KEGG:cqu:CpipJ_CPIJ003765 VectorBase:CPIJ003765 PhylomeDB:B0W9F4
            Uniprot:B0W9F4
        Length = 978

 Score = 195 (73.7 bits), Expect = 5.1e-21, Sum P(4) = 5.1e-21
 Identities = 57/210 (27%), Positives = 103/210 (49%)

Query:    27 KAGENIPVCDFYEKFDAVGREAPLAPG--VYSITKLKEMGRELGLCPYFLARQAIIHAKI 84
             KA      C FY + +A  +E P   G  +  I  L  +  +L  CP+F++++ I +A +
Sbjct:   178 KAKIQARACSFYSRVEAC-KERPEITGSTIMDIEDLVRVSTKLKACPFFMSKELIENADV 236

Query:    85 VVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 144
             +   Y+YLLDPK     + ELA +++++ DEAHN+D +C +S S++I    I   + ++ 
Sbjct:   237 LFMPYNYLLDPKARKANNLELA-NTIIILDEAHNVDKMCEESASMQIRSSDIALCIDDVT 295

Query:   145 TLEGTLKE---MKEADSAKLR---EEYARLVEGLRDAQ-SARETDVVLAN--PVLPDEIL 195
             ++   +     + E D AK     ++ A L E L   + +  E  V+ +      P   +
Sbjct:   296 SIMKVMDNTVAIPEDDDAKKDFTIDDLALLKEMLLSLEKTVDEIPVMFSQGGSTQPGTYI 355

Query:   196 QEVVP-GNIRTAE-HFVG-FLKRFIEYLKT 222
              E+    NI+    H +   L+  I+Y+ T
Sbjct:   356 FEIFEKANIKEGNYHIIAQLLENIIQYIAT 385

 Score = 187 (70.9 bits), Expect = 5.8e-21, Sum P(4) = 5.8e-21
 Identities = 42/139 (30%), Positives = 75/139 (53%)

Query:   682 KAGENIPVCDFYEKFDAVGREAPLAPG--VYSITKLKEMGRELGLCPYFLARQAIIHAKI 739
             KA      C FY + +A  +E P   G  +  I  L  +  +L  CP+F++++ I +A +
Sbjct:   178 KAKIQARACSFYSRVEAC-KERPEITGSTIMDIEDLVRVSTKLKACPFFMSKELIENADV 236

Query:   740 VVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 799
             +   Y+YLLDPK     + ELA +++++ DEAHN+D +C +S S++I    I   + ++ 
Sbjct:   237 LFMPYNYLLDPKARKANNLELA-NTIIILDEAHNVDKMCEESASMQIRSSDIALCIDDVT 295

Query:   800 TLEGTLKE---MKEADSAK 815
             ++   +     + E D AK
Sbjct:   296 SIMKVMDNTVAIPEDDDAK 314

 Score = 100 (40.3 bits), Expect = 5.1e-21, Sum P(4) = 5.1e-21
 Identities = 23/87 (26%), Positives = 41/87 (47%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L S +  RD+   I + G+ ++    ++P G++ FF SY  L     +W + GI   + +
Sbjct:   536 LNSSYGNRDNPKYISSLGRTILSFCPIIPGGLLVFFPSYPLLNKCQEAWQETGIWAQISR 595

Query:   640 RKLLFIETQDALDSRSVSKERDGKIVD 666
              K +F+E +      +   E   KI D
Sbjct:   596 TKPIFVEPRGKDQFLNTMTEYYAKIND 622

 Score = 99 (39.9 bits), Expect = 5.8e-21, Sum P(4) = 5.8e-21
 Identities = 23/57 (40%), Positives = 35/57 (61%)

Query:   427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             +I+ +PV FP+E  Y  Q  YM  + + L    + +LE P+GTGKT SLL   +A++
Sbjct:     5 LINGIPVNFPFEP-YQVQRDYMARVIECLQNSSNGVLESPTGTGKTLSLLCSSLAWI 60

 Score = 77 (32.2 bits), Expect = 5.1e-21, Sum P(4) = 5.1e-21
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
             +++ K DYG ++  D RF    ++++L  WIQ++L
Sbjct:   706 VIRHKNDYGAILLCDNRFHNPRQKAQLSSWIQKHL 740

 Score = 68 (29.0 bits), Expect = 5.8e-21, Sum P(4) = 5.8e-21
 Identities = 19/65 (29%), Positives = 32/65 (49%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDI 549
             V K++Y SRT  ++ + ++E+        K+     M  ++L SR  LCIH E    +  
Sbjct:   119 VPKIIYASRTHSQLTQAMQEM--------KNTSYGFMRAVILGSRDQLCIHPEVAKEEGN 170

Query:   550 SVIRN 554
             +V  N
Sbjct:   171 AVKTN 175

 Score = 68 (29.0 bits), Expect = 8.8e-18, Sum P(4) = 8.8e-18
 Identities = 13/54 (24%), Positives = 27/54 (50%)

Query:   539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISV 592
             ++S +  RD+   I + G+ ++    ++P G++ FF SY  L    E   +  +
Sbjct:   536 LNSSYGNRDNPKYISSLGRTILSFCPIIPGGLLVFFPSYPLLNKCQEAWQETGI 589

 Score = 59 (25.8 bits), Expect = 5.1e-21, Sum P(4) = 5.1e-21
 Identities = 11/34 (32%), Positives = 22/34 (64%)

Query:   356 VLYFCCLDSSLAIKPVFDR-FQTVVITSGTLSPL 388
             V+ F C +    ++ +  R  +++++TSGTL+PL
Sbjct:   463 VINFWCFNPGFGMRQLLGRNARSIILTSGTLAPL 496


>RGD|1306721 [details] [associations]
            symbol:Rtel1 "regulator of telomere elongation helicase 1"
            species:10116 "Rattus norvegicus" [GO:0000723 "telomere
            maintenance" evidence=ISO;ISS] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=IEA;ISO;ISS] [GO:0005524 "ATP binding"
            evidence=IEA;ISO;ISS] [GO:0005634 "nucleus" evidence=IEA;ISO;ISS]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0010569 "regulation of
            double-strand break repair via homologous recombination"
            evidence=ISO;ISS] [GO:0046872 "metal ion binding" evidence=IEA]
            [GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR006935
            InterPro:IPR010614 InterPro:IPR014013 Pfam:PF04851 Pfam:PF06733
            Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
            SMART:SM00491 RGD:1306721 INTERPRO:IPR013020 GO:GO:0005524
            GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
            GO:GO:0051539 GO:GO:0004003 GO:GO:0000723 GO:GO:0010569
            eggNOG:COG1199 TIGRFAMs:TIGR00604 EMBL:CH474066
            HOGENOM:HOG000007558 KO:K11136 CTD:51750 OrthoDB:EOG412M4Q
            EMBL:BC086436 IPI:IPI00781945 IPI:IPI00782143 RefSeq:NP_001178786.1
            UniGene:Rn.98315 PRIDE:Q5RJZ1 GeneID:362288 KEGG:rno:362288
            UCSC:RGD:1306721 NextBio:679364 ArrayExpress:Q5RJZ1
            Genevestigator:Q5RJZ1 Uniprot:Q5RJZ1
        Length = 1274

 Score = 180 (68.4 bits), Expect = 7.3e-21, Sum P(4) = 7.3e-21
 Identities = 49/174 (28%), Positives = 87/174 (50%)

Query:    35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
             C FY   +    E  LA  +  I  L + G +  +CPY+L+R     A I+   Y+YLLD
Sbjct:   172 CHFYNNVEEKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLD 231

Query:    95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
              K     + +L + +VV+FDEAHN++ +C +S S  +  R +   +  I Q LE   ++ 
Sbjct:   232 AKSRKAHNIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEVINQVLE---EQA 287

Query:   154 KEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLP--DEILQEV-VPGNIR 204
             + A   +L++E+  +++      +    D+     +L   +E +  V +PG+ R
Sbjct:   288 RVAQHGELQQEF--IIDTSSSGLNMELEDIAKLKMILLHLEEAIDAVQLPGDDR 339

 Score = 179 (68.1 bits), Expect = 2.4e-18, Sum P(3) = 2.4e-18
 Identities = 42/132 (31%), Positives = 70/132 (53%)

Query:   690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
             C FY   +    E  LA  +  I  L + G +  +CPY+L+R     A I+   Y+YLLD
Sbjct:   172 CHFYNNVEEKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLD 231

Query:   750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
              K     + +L + +VV+FDEAHN++ +C +S S  +  R +   +  I Q LE   ++ 
Sbjct:   232 AKSRKAHNIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEVINQVLE---EQA 287

Query:   809 KEADSAKLREEY 820
             + A   +L++E+
Sbjct:   288 RVAQHGELQQEF 299

 Score = 106 (42.4 bits), Expect = 7.3e-21, Sum P(4) = 7.3e-21
 Identities = 30/93 (32%), Positives = 47/93 (50%)

Query:   557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
             QL V +    PDGV         L S ++ R     + + G+ L +IA VVP G++ FF 
Sbjct:   510 QLWVGVIPRGPDGV--------QLSSAYDKRFSEECLSSLGKALGNIARVVPHGLLVFFP 561

Query:   617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQD 649
             SY  +E  +  W  QG+   ++  K LF+E ++
Sbjct:   562 SYPVMEKSLEFWQAQGMSKKVEALKPLFVEPRN 594

 Score = 99 (39.9 bits), Expect = 2.4e-18, Sum P(3) = 2.4e-18
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query:   426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
             ++++ + V FP++  YP Q  YM ++ + L  K + +LE P+GTGKT  LL   +A+   
Sbjct:     4 VVLNGVTVDFPFQP-YPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWRE- 61

Query:   486 HPLD-VTKLLYCSRTVPEI 503
             H  D V+ L    R   E+
Sbjct:    62 HLRDAVSSLKIAERVQGEL 80

 Score = 88 (36.0 bits), Expect = 7.3e-21, Sum P(4) = 7.3e-21
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
             +++ + DYG +   D RFA +D R+ LP W++ YL
Sbjct:   698 VIRHRHDYGAIFLCDHRFAYADARAHLPSWVRPYL 732

 Score = 73 (30.8 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query:   489 DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
             D+ K++Y SRT  ++ +V+ EL          N        VL SR+ LCIH E + ++
Sbjct:   105 DIPKIIYASRTHSQLTQVIGEL---------RNTSYRPKVCVLGSREQLCIHPEVKKQE 154

 Score = 70 (29.7 bits), Expect = 3.2e-17, Sum P(4) = 3.2e-17
 Identities = 17/58 (29%), Positives = 30/58 (51%)

Query:   528 GLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
             G++      + + S ++ R     + + G+ L +IA VVP G++ FF SY  +E   E
Sbjct:   514 GVIPRGPDGVQLSSAYDKRFSEECLSSLGKALGNIARVVPHGLLVFFPSYPVMEKSLE 571

 Score = 62 (26.9 bits), Expect = 7.3e-21, Sum P(4) = 7.3e-21
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query:   343 EPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDR-FQTVVITSGTLSPLDMY 391
             + +S  A      VL + C   S +++ +  +  +T+++TSGTL+PL  +
Sbjct:   439 DAWSTTASRKQGKVLSYWCFSPSHSMRELVQQGVRTLILTSGTLAPLSSF 488

 Score = 45 (20.9 bits), Expect = 5.0e-07, Sum P(4) = 5.0e-07
 Identities = 19/71 (26%), Positives = 34/71 (47%)

Query:   219 YLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESP 278
             YL   L+ Q  +   P  +L D  S+ A ++  +    IF  E H      V+++ +ES 
Sbjct:   210 YLSRNLKQQADIIFMPYNYLLDAKSRKAHNIDLKGTVVIFD-EAH-----NVEKICEESA 263

Query:   279 ATFL--KDISS 287
             +  L  +D++S
Sbjct:   264 SFDLTPRDVAS 274

 Score = 43 (20.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query:   284 DISSKVCIERKPLRFCAE-RLASLLRTLE 311
             D  S VC+E +   F A+ R   LL  LE
Sbjct:   812 DSESSVCVEYEQQTFSAQKRPMGLLAALE 840

 Score = 39 (18.8 bits), Expect = 0.00012, Sum P(3) = 0.00012
 Identities = 14/61 (22%), Positives = 25/61 (40%)

Query:   485 AHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEE-INMTGLVLSSRKNLCIHSEF 543
             AH +D+   +        +EK+ EE A  FD   +     + +   VL  +  +  H E 
Sbjct:   237 AHNIDLKGTVVIFDEAHNVEKICEESAS-FDLTPRDVASGLEVINQVLEEQARVAQHGEL 295

Query:   544 E 544
             +
Sbjct:   296 Q 296


>UNIPROTKB|B4L1Z2 [details] [associations]
            symbol:GI15901 "Regulator of telomere elongation helicase 1
            homolog" species:7230 "Drosophila mojavensis" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
            "ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0010569 "regulation of double-strand break repair via
            homologous recombination" evidence=ISS] InterPro:IPR006554
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
            GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
            GO:GO:0051539 GO:GO:0004003 GO:GO:0010569 TIGRFAMs:TIGR00604
            EMBL:CH933810 KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_002010396.1
            EnsemblMetazoa:FBtr0166626 GeneID:6584754 KEGG:dmo:Dmoj_GI15901
            FlyBase:FBgn0138650 InParanoid:B4L1Z2 Uniprot:B4L1Z2
        Length = 1014

 Score = 178 (67.7 bits), Expect = 2.0e-20, Sum P(4) = 2.0e-20
 Identities = 36/107 (33%), Positives = 62/107 (57%)

Query:    52 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 111
             P +  I  L ++G+ L +CPY+ +++ +  A I    Y+YLLDPK       EL+ +++V
Sbjct:   192 PSIMDIEDLVKVGQRLKMCPYYASKELVSSADITFMPYNYLLDPKARKANKIELS-NTIV 250

Query:   112 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADS 158
             + DEAHNI+ +C +S SV+I    +  A+ ++  +   +K    ADS
Sbjct:   251 ILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHI---MKIFTSADS 294

 Score = 178 (67.7 bits), Expect = 7.7e-16, Sum P(3) = 7.7e-16
 Identities = 36/107 (33%), Positives = 62/107 (57%)

Query:   707 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 766
             P +  I  L ++G+ L +CPY+ +++ +  A I    Y+YLLDPK       EL+ +++V
Sbjct:   192 PSIMDIEDLVKVGQRLKMCPYYASKELVSSADITFMPYNYLLDPKARKANKIELS-NTIV 250

Query:   767 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADS 813
             + DEAHNI+ +C +S SV+I    +  A+ ++  +   +K    ADS
Sbjct:   251 ILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHI---MKIFTSADS 294

 Score = 122 (48.0 bits), Expect = 2.0e-20, Sum P(4) = 2.0e-20
 Identities = 30/92 (32%), Positives = 49/92 (53%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L S ++ RD+   I + GQ +++++ +VPDG++ FF SY  L   V +W   G+  +L  
Sbjct:   527 LISNYKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNQCVDAWQASGLWADLSS 586

Query:   640 RKLLFIETQDALDSRSVSKERDGKIVD--GRC 669
             RK +F+E +      S  +E    I D  G C
Sbjct:   587 RKPIFLEPRGKDQFTSTMEEFYQAIRDSKGAC 618

 Score = 94 (38.1 bits), Expect = 7.7e-16, Sum P(3) = 7.7e-16
 Identities = 26/71 (36%), Positives = 41/71 (57%)

Query:   427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA- 485
             +I  +PV FP+E  Y  Q A+M ++   L    + +LE P+GTGKT SLL   +A++   
Sbjct:     5 IIAGIPVHFPFEP-YEVQRAFMEKVIMCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTR 63

Query:   486 ---HPLDVTKL 493
                H +++ KL
Sbjct:    64 QSEHQINMQKL 74

 Score = 85 (35.0 bits), Expect = 6.4e-15, Sum P(3) = 6.4e-15
 Identities = 22/94 (23%), Positives = 51/94 (54%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLS------SRKNLCIHSEF 543
             V  ++  S T+  ++ ++ ELA     ++++   ++ + + +        R+ L   S +
Sbjct:   474 VRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQSQVYVKIIGTGPDREQLI--SNY 531

Query:   544 ETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 577
             + RD+   I + GQ +++++ +VPDG++ FF SY
Sbjct:   532 KNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSY 565

 Score = 76 (31.8 bits), Expect = 5.3e-14, Sum P(3) = 5.3e-14
 Identities = 22/76 (28%), Positives = 36/76 (47%)

Query:   467 SGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINM 526
             +G   T ++  L +    A+   V K++Y SRT  ++ + + EL        K     +M
Sbjct:    84 TGGSATGAISDLALTMGKANNWGVPKVIYASRTHSQLTQAMREL--------KRTAYASM 135

Query:   527 TGLVLSSRKNLCIHSE 542
               +VL SR  LCIH +
Sbjct:   136 RSVVLGSRDQLCIHPD 151

 Score = 66 (28.3 bits), Expect = 2.0e-20, Sum P(4) = 2.0e-20
 Identities = 11/35 (31%), Positives = 22/35 (62%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
             +++ + DYG ++  D RF  + +  +L KWI+ +L
Sbjct:   695 VIRHRHDYGAILLCDARFQDASQVQQLSKWIRGHL 729

 Score = 61 (26.5 bits), Expect = 2.0e-20, Sum P(4) = 2.0e-20
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query:   356 VLYFCCLDSSLAIKPVFD-RFQTVVITSGTLSPLDMYPKILNFQ-PVIMH 403
             ++ F C +    ++ + + + ++V++TSGTL+PL   P I     PV  H
Sbjct:   454 IINFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLK--PLIAELAIPVAQH 501

 Score = 39 (18.8 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query:   319 SSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSL 366
             S L     +A  + S+T    +     ++++ T PN + +   L+S++
Sbjct:   804 SELAAKAEMANSIKSWTPADYVNAAGCTNQSQTAPNAMDFMSRLNSNV 851

 Score = 38 (18.4 bits), Expect = 3.6e-06, Sum P(4) = 3.6e-06
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query:    22 VRDRHKAGENIPVCDFYEKFDAV 44
             + D  K G+ + +C +Y   + V
Sbjct:   197 IEDLVKVGQRLKMCPYYASKELV 219


>UNIPROTKB|E2RLA6 [details] [associations]
            symbol:RTEL1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
            GeneTree:ENSGT00530000063199 OMA:VLKMQFL EMBL:AAEX03014162
            EMBL:AAEX03014163 Ensembl:ENSCAFT00000020689 Uniprot:E2RLA6
        Length = 1232

 Score = 185 (70.2 bits), Expect = 3.8e-20, Sum P(4) = 3.8e-20
 Identities = 45/133 (33%), Positives = 70/133 (52%)

Query:    35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
             C FY   +    E  LA  +  I  L + G +  LCPY+L+R     A I+   Y+YLLD
Sbjct:   171 CHFYNNVEEKSLEQELATPILDIEDLVKSGNKHKLCPYYLSRNLKQQADIIFMPYNYLLD 230

Query:    95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEM- 153
              K     S +L + +VV+FDEAHN++ +C ++ S  +    +  A G +  L+  L+E  
Sbjct:   231 TKSRRAHSIDL-KGTVVIFDEAHNVEKMCEETASFDLTPHDV--ASG-LDVLDQVLEEQT 286

Query:   154 KEADSAKLREEYA 166
             K A   +LR E++
Sbjct:   287 KAAQQDELRSEFS 299

 Score = 185 (70.2 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
 Identities = 45/133 (33%), Positives = 70/133 (52%)

Query:   690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
             C FY   +    E  LA  +  I  L + G +  LCPY+L+R     A I+   Y+YLLD
Sbjct:   171 CHFYNNVEEKSLEQELATPILDIEDLVKSGNKHKLCPYYLSRNLKQQADIIFMPYNYLLD 230

Query:   750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEM- 808
              K     S +L + +VV+FDEAHN++ +C ++ S  +    +  A G +  L+  L+E  
Sbjct:   231 TKSRRAHSIDL-KGTVVIFDEAHNVEKMCEETASFDLTPHDV--ASG-LDVLDQVLEEQT 286

Query:   809 KEADSAKLREEYA 821
             K A   +LR E++
Sbjct:   287 KAAQQDELRSEFS 299

 Score = 95 (38.5 bits), Expect = 3.8e-20, Sum P(4) = 3.8e-20
 Identities = 23/70 (32%), Positives = 37/70 (52%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L S F+ R   + + + G+ L +IA VVP G++ FF SY  LE  +  W        L+ 
Sbjct:   524 LSSAFDKRFSEACLSSLGKALGNIARVVPHGLLVFFPSYPVLERSLQFWRTHDSAGKLEA 583

Query:   640 RKLLFIETQD 649
              K +F+E ++
Sbjct:   584 LKPVFVEPRN 593

 Score = 82 (33.9 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query:   426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
             + ++ + V FP+E  Y  Q  YM ++ + L  + + +LE P+GTGKT  LL   +A+
Sbjct:     4 ITLNGVAVDFPFEP-YKCQEEYMSKVLECLQKRVNGILESPTGTGKTLCLLCSTLAW 59

 Score = 82 (33.9 bits), Expect = 7.8e-19, Sum P(4) = 7.8e-19
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query:   517 YIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTS 576
             ++ H ++I   G+V        + S F+ R   + + + G+ L +IA VVP G++ FF S
Sbjct:   503 HVIHQQQI-WVGIVSRGPDGAQLSSAFDKRFSEACLSSLGKALGNIARVVPHGLLVFFPS 561

Query:   577 YLYLE 581
             Y  LE
Sbjct:   562 YPVLE 566

 Score = 81 (33.6 bits), Expect = 3.8e-20, Sum P(4) = 3.8e-20
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
             +++ + DYG +   D RFA  D R++LP W++ ++
Sbjct:   697 VIRHRHDYGAIFLCDHRFAHVDARAQLPSWVRPHV 731

 Score = 75 (31.5 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query:   489 DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
             D+ K++Y SRT  ++ +V+ EL          N        VL SR+ LCIH E + ++
Sbjct:   104 DIPKIIYASRTHSQLTQVIREL---------RNTSYRPRVCVLGSREQLCIHPEVKKQE 153

 Score = 67 (28.6 bits), Expect = 3.8e-20, Sum P(4) = 3.8e-20
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query:   343 EPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDR-FQTVVITSGTLSPLDMY 391
             + +S  A   P  VL + C     +++ +  +  +TV++TSGTL+P+  +
Sbjct:   438 DAWSSTAARKPGKVLSYWCFSPGHSMRQLVQQGVRTVILTSGTLAPVSSF 487

 Score = 40 (19.1 bits), Expect = 2.7e-05, Sum P(4) = 2.7e-05
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query:   219 YLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEH 263
             YL   L+ Q  +   P  +L D  S+ A S+  +    IF  E H
Sbjct:   209 YLSRNLKQQADIIFMPYNYLLDTKSRRAHSIDLKGTVVIFD-EAH 252

 Score = 37 (18.1 bits), Expect = 5.4e-12, Sum P(3) = 5.4e-12
 Identities = 6/29 (20%), Positives = 17/29 (58%)

Query:   634 IDNLQKRKLLFIETQDALDSRSVSKERDG 662
             +++L K K++ +  + A+D+  +  +  G
Sbjct:   311 LEDLAKLKMILLRLEAAIDAVELPGDHSG 339


>UNIPROTKB|Q16X92 [details] [associations]
            symbol:AAEL008960 "Regulator of telomere elongation
            helicase 1 homolog" species:7159 "Aedes aegypti" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
            "ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0010569 "regulation of double-strand break repair via
            homologous recombination" evidence=ISS] InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
            PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
            GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
            SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
            EMBL:CH477545 RefSeq:XP_001653621.1 UniGene:Aae.7622
            ProteinModelPortal:Q16X92 PRIDE:Q16X92 EnsemblMetazoa:AAEL008960-RA
            GeneID:5571306 KEGG:aag:AaeL_AAEL008960 VectorBase:AAEL008960
            HOGENOM:HOG000007558 KO:K11136 OMA:PFPPLKD OrthoDB:EOG4S4MX7
            PhylomeDB:Q16X92 Uniprot:Q16X92
        Length = 1010

 Score = 181 (68.8 bits), Expect = 4.8e-20, Sum P(4) = 4.8e-20
 Identities = 52/210 (24%), Positives = 104/210 (49%)

Query:    27 KAGENIPVCDFYEKFDAVGREAP--LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKI 84
             KA      C FY + ++  +E P  ++  +  I  L ++G ++  CP+FL+++ I  A I
Sbjct:   176 KAKVQSRTCSFYSRVESC-KERPEVVSNVIMDIEDLVKVGTKVRACPFFLSKELIESADI 234

Query:    85 VVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 144
             +   Y+YLLDPK     + E++ +++++ DEAHN++ +C +S S++I    I   + ++ 
Sbjct:   235 LFMPYNYLLDPKARKANNLEIS-NTIIILDEAHNVEKMCEESASMQIRSTDIALCIDDVT 293

Query:   145 TLEGTLKE---MKEADSAKLR---EEYARLVEGLRDAQSARETDVVLANP---VLPDEIL 195
             ++   +     + E D  K     ++ A L E L   +   ++  V+ +      P   +
Sbjct:   294 SIMKVMDHSVAIPEDDETKKDFTIDDLALLKEMLLQLEKTVDSIPVMFSQGGNTFPGTYI 353

Query:   196 QEVVP-GNIRTAE-HFVG-FLKRFIEYLKT 222
              E+    NI+    H +   L+  I+Y+ T
Sbjct:   354 FEIFEKANIKEGNYHIIAQLLENIIQYIAT 383

 Score = 174 (66.3 bits), Expect = 5.3e-20, Sum P(4) = 5.3e-20
 Identities = 35/122 (28%), Positives = 71/122 (58%)

Query:   682 KAGENIPVCDFYEKFDAVGREAP--LAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKI 739
             KA      C FY + ++  +E P  ++  +  I  L ++G ++  CP+FL+++ I  A I
Sbjct:   176 KAKVQSRTCSFYSRVESC-KERPEVVSNVIMDIEDLVKVGTKVRACPFFLSKELIESADI 234

Query:   740 VVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 799
             +   Y+YLLDPK     + E++ +++++ DEAHN++ +C +S S++I    I   + ++ 
Sbjct:   235 LFMPYNYLLDPKARKANNLEIS-NTIIILDEAHNVEKMCEESASMQIRSTDIALCIDDVT 293

Query:   800 TL 801
             ++
Sbjct:   294 SI 295

 Score = 99 (39.9 bits), Expect = 4.8e-20, Sum P(4) = 4.8e-20
 Identities = 19/67 (28%), Positives = 35/67 (52%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L S +  RD+   I + G+ ++    ++P G++ FF SY  L     +W + GI   + +
Sbjct:   534 LNSSYGNRDNPKYISSLGRTILSFCPIIPGGLLVFFPSYPLLNKCQEAWQETGIWAQISR 593

Query:   640 RKLLFIE 646
              K +F+E
Sbjct:   594 TKPIFVE 600

 Score = 85 (35.0 bits), Expect = 4.8e-20, Sum P(4) = 4.8e-20
 Identities = 14/38 (36%), Positives = 24/38 (63%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDN 886
             +++ K DYG ++  D RF    ++S+L  WIQ++L  N
Sbjct:   704 VIRHKNDYGAILLCDNRFHNHRQKSQLSSWIQKHLNTN 741

 Score = 85 (35.0 bits), Expect = 5.3e-20, Sum P(4) = 5.3e-20
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query:   428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             I+ + V FP+E  Y  Q  YM  + + L    + +LE P+GTGKT SLL   +A++
Sbjct:     6 INGITVNFPFEP-YQVQRDYMSRVIECLQNSTNGVLESPTGTGKTLSLLCSSLAWV 60

 Score = 79 (32.9 bits), Expect = 5.3e-20, Sum P(4) = 5.3e-20
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDI 549
             V K++Y SRT  ++ +V++E+        K+     M G++L SR  LCIH E    +  
Sbjct:   117 VPKIVYASRTHSQLTQVMQEM--------KNTSYSFMKGVILGSRDQLCIHPEVSKEEGN 168

Query:   550 SVIRN 554
             S   N
Sbjct:   169 STKTN 173

 Score = 68 (29.0 bits), Expect = 6.5e-17, Sum P(4) = 6.5e-17
 Identities = 13/54 (24%), Positives = 27/54 (50%)

Query:   539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISV 592
             ++S +  RD+   I + G+ ++    ++P G++ FF SY  L    E   +  +
Sbjct:   534 LNSSYGNRDNPKYISSLGRTILSFCPIIPGGLLVFFPSYPLLNKCQEAWQETGI 587

 Score = 58 (25.5 bits), Expect = 4.8e-20, Sum P(4) = 4.8e-20
 Identities = 11/34 (32%), Positives = 22/34 (64%)

Query:   356 VLYFCCLDSSLAIKPVFDR-FQTVVITSGTLSPL 388
             V+ F C +    ++ +  R  +++++TSGTL+PL
Sbjct:   461 VVSFWCFNPGFGMRQLLGRNARSIILTSGTLAPL 494

 Score = 42 (19.8 bits), Expect = 9.1e-06, Sum P(4) = 9.1e-06
 Identities = 36/162 (22%), Positives = 64/162 (39%)

Query:   122 VCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARET 181
             +C+D ++  +  + ++ +V  I   + T K+    D A L+E   +L E   D+     +
Sbjct:   287 LCIDDVTSIM--KVMDHSVA-IPEDDETKKDFTIDDLALLKEMLLQL-EKTVDSIPVMFS 342

Query:   182 DVVLANPVLPDEILQEVVP-GNIRTAE-HFVG-FLKRFIEYLKTRLRVQQVVQESP---- 234
                      P   + E+    NI+    H +   L+  I+Y+ T       V+       
Sbjct:   343 Q---GGNTFPGTYIFEIFEKANIKEGNYHIIAQLLENIIQYIATITEKNNFVRRGGGLQI 399

Query:   235 -ATFLKDISSKPAP---SMISEAYRYIFSTEEHLKTRLRVQQ 272
              A  L  I +   P   + I + Y+     EE  KTR  V+Q
Sbjct:   400 LAEALSIIFAGSGPEYRASIDKCYKVHIEIEEQKKTRGNVKQ 441


>UNIPROTKB|B4JNS2 [details] [associations]
            symbol:GH24089 "Regulator of telomere elongation helicase 1
            homolog" species:7222 "Drosophila grimshawi" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
            "ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0010569 "regulation of double-strand break repair via
            homologous recombination" evidence=ISS] InterPro:IPR006554
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
            GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
            GO:GO:0051539 GO:GO:0004003 EMBL:CH916371 GO:GO:0010569
            eggNOG:COG1199 TIGRFAMs:TIGR00604 KO:K11136 OMA:PFPPLKD
            OrthoDB:EOG4S4MX7 RefSeq:XP_001992658.1 EnsemblMetazoa:FBtr0159503
            GeneID:6565576 KEGG:dgr:Dgri_GH24089 FlyBase:FBgn0131545
            InParanoid:B4JNS2 Uniprot:B4JNS2
        Length = 986

 Score = 171 (65.3 bits), Expect = 7.9e-20, Sum P(4) = 7.9e-20
 Identities = 32/92 (34%), Positives = 55/92 (59%)

Query:    52 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 111
             P +  I  L ++G+ L +CPYF +++ +  A I    Y+YLLDPK       EL+ +++V
Sbjct:   193 PSIMDIEDLVKVGQRLKMCPYFASKELVNSADITFMPYNYLLDPKARKANKIELS-NAIV 251

Query:   112 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
             + DE HNI+ +C +S SV+I    +  A+ ++
Sbjct:   252 ILDEGHNIEKICEESASVQIRSSDVAIAIEDV 283

 Score = 171 (65.3 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
 Identities = 32/92 (34%), Positives = 55/92 (59%)

Query:   707 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 766
             P +  I  L ++G+ L +CPYF +++ +  A I    Y+YLLDPK       EL+ +++V
Sbjct:   193 PSIMDIEDLVKVGQRLKMCPYFASKELVNSADITFMPYNYLLDPKARKANKIELS-NAIV 251

Query:   767 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
             + DE HNI+ +C +S SV+I    +  A+ ++
Sbjct:   252 ILDEGHNIEKICEESASVQIRSSDVAIAIEDV 283

 Score = 120 (47.3 bits), Expect = 7.9e-20, Sum P(4) = 7.9e-20
 Identities = 29/92 (31%), Positives = 49/92 (53%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L S ++ RD+   I + GQ +++++ +VPDG++ FF SY  L   V +W   G+  ++  
Sbjct:   527 LISNYKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNQCVDAWQASGLWADISS 586

Query:   640 RKLLFIETQDALDSRSVSKERDGKIVD--GRC 669
             RK +F+E +      S  +E    I D  G C
Sbjct:   587 RKPIFLEPRGKDQFTSTMEEFYQAIRDSKGAC 618

 Score = 92 (37.4 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query:   427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAH 486
             +I  +PV FP+E  Y  Q AYM ++   L    + +LE P+GTGKT SLL   + ++   
Sbjct:     5 IIAGIPVHFPFEP-YDVQRAYMEKVIICLRDGTNGVLESPTGTGKTLSLLCSTLGWIRTR 63

Query:   487 PLDV 490
               +V
Sbjct:    64 QSEV 67

 Score = 90 (36.7 bits), Expect = 3.9e-15, Sum P(3) = 3.9e-15
 Identities = 25/101 (24%), Positives = 53/101 (52%)

Query:   483 MNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLS------SRKN 536
             +N H   V  ++  S T+  ++ ++ ELA     ++++   +N   + +        R+ 
Sbjct:   470 LNTH---VRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVNEAQVYVKIIGTGPDREQ 526

Query:   537 LCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 577
             L   S ++ RD+   I + GQ +++++ +VPDG++ FF SY
Sbjct:   527 LI--SNYKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSY 565

 Score = 75 (31.5 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
 Identities = 23/80 (28%), Positives = 38/80 (47%)

Query:   464 EMPSGTGKTTSLLSLIVAYMN-AHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNE 522
             ++    G   ++ S I A +  ++   V K++Y SRT  ++ + + EL        K   
Sbjct:    81 QLTGAAGAGAAMGSEIAAVIGKSNNWGVPKVIYASRTHSQLTQAMREL--------KRTA 132

Query:   523 EINMTGLVLSSRKNLCIHSE 542
               NM  +VL SR  LCIH +
Sbjct:   133 YANMRAVVLGSRDQLCIHPD 152

 Score = 70 (29.7 bits), Expect = 7.9e-20, Sum P(4) = 7.9e-20
 Identities = 11/35 (31%), Positives = 22/35 (62%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
             +++ + DYG ++  D RF  + +  +L KWI+ +L
Sbjct:   695 VIRHRNDYGAILLCDARFQDASQVQQLSKWIRNHL 729

 Score = 60 (26.2 bits), Expect = 7.9e-20, Sum P(4) = 7.9e-20
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query:   356 VLYFCCLDSSLAIKPVFD-RFQTVVITSGTLSPLDMYPKILNFQ-PVIMH 403
             ++ F C +    ++ + +   ++V++TSGTL+PL   P I     PV  H
Sbjct:   454 IINFWCFNPGFGMEQLLNTHVRSVILTSGTLAPLK--PLIAELAIPVAQH 501

 Score = 44 (20.5 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query:   634 IDNLQKRKLLFIETQDALDSRSVSKERDG 662
             ID+L   K + +E + A+D   V  + DG
Sbjct:   310 IDDLTLLKEMLLELEKAIDGVIVDNKADG 338

 Score = 38 (18.4 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query:   319 SSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSL 366
             S L     +A  + ++T          + ++P  PNP+ +   L+S++
Sbjct:   803 SELAAKVEMANSIKTWTPADYANAAGRNAQSPKAPNPMDFMSRLNSNV 850


>UNIPROTKB|B4M891 [details] [associations]
            symbol:GJ16649 "Regulator of telomere elongation helicase 1
            homolog" species:7244 "Drosophila virilis" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
            "ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0010569 "regulation of double-strand break repair via
            homologous recombination" evidence=ISS] InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
            PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
            GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
            SMART:SM00487 EMBL:CH940653 GO:GO:0010569 eggNOG:COG1199
            TIGRFAMs:TIGR00604 KO:K11136 OMA:PFPPLKD OrthoDB:EOG4S4MX7
            RefSeq:XP_002056881.1 EnsemblMetazoa:FBtr0232574 GeneID:6633257
            KEGG:dvi:Dvir_GJ16649 FlyBase:FBgn0203833 InParanoid:B4M891
            Uniprot:B4M891
        Length = 1005

 Score = 177 (67.4 bits), Expect = 1.0e-19, Sum P(4) = 1.0e-19
 Identities = 34/92 (36%), Positives = 56/92 (60%)

Query:    52 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 111
             P +  I  L ++G+ L +CPYF +++ +  A I    Y+YLLDPK       EL+ +++V
Sbjct:   190 PSIMDIEDLVKVGQRLKMCPYFASKELVNGADITFMPYNYLLDPKARKANKIELS-NTIV 248

Query:   112 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
             + DEAHNI+ +C +S SV+I    +  A+ +I
Sbjct:   249 ILDEAHNIEKICEESASVQIRSSDVAMAIEDI 280

 Score = 177 (67.4 bits), Expect = 7.6e-16, Sum P(3) = 7.6e-16
 Identities = 34/92 (36%), Positives = 56/92 (60%)

Query:   707 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 766
             P +  I  L ++G+ L +CPYF +++ +  A I    Y+YLLDPK       EL+ +++V
Sbjct:   190 PSIMDIEDLVKVGQRLKMCPYFASKELVNGADITFMPYNYLLDPKARKANKIELS-NTIV 248

Query:   767 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
             + DEAHNI+ +C +S SV+I    +  A+ +I
Sbjct:   249 ILDEAHNIEKICEESASVQIRSSDVAMAIEDI 280

 Score = 117 (46.2 bits), Expect = 1.0e-19, Sum P(4) = 1.0e-19
 Identities = 29/92 (31%), Positives = 49/92 (53%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L S ++ RD+   I + GQ +++++ +VPDG++ FF SY  L   V +W   G+  ++  
Sbjct:   526 LISNYKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNQCVDAWQASGLWADISC 585

Query:   640 RKLLFIETQDALDSRSVSKERDGKIVD--GRC 669
             RK +F+E +      S  +E    I D  G C
Sbjct:   586 RKPIFLEPRGKDQFTSTMEEFYQAIRDSKGAC 617

 Score = 95 (38.5 bits), Expect = 7.6e-16, Sum P(3) = 7.6e-16
 Identities = 24/57 (42%), Positives = 35/57 (61%)

Query:   427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             +I  +PV FP+E  Y  Q AYM ++   L    + +LE P+GTGKT SLL   +A++
Sbjct:     5 IIAGIPVHFPFEP-YEVQRAYMEKVIMCLRDGTNGVLESPTGTGKTLSLLCASLAWI 60

 Score = 91 (37.1 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
 Identities = 25/101 (24%), Positives = 55/101 (54%)

Query:   483 MNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLS------SRKN 536
             +NAH   V  ++  S T+  ++ ++ ELA     ++++   ++ + + +        R+ 
Sbjct:   469 LNAH---VRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDRSQVYVKIIGTGPDREQ 525

Query:   537 LCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 577
             L   S ++ RD+   I + GQ +++++ +VPDG++ FF SY
Sbjct:   526 LI--SNYKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSY 564

 Score = 83 (34.3 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
 Identities = 30/100 (30%), Positives = 47/100 (47%)

Query:   443 EQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPE 502
             EQ  YM +L+  LD +     +   G G   + L+ ++    A+   V K++Y SRT  +
Sbjct:    66 EQQQYMQKLQ--LDQQK----QATGGAGAGVADLNAVMG--KANNWGVPKVIYASRTHSQ 117

Query:   503 IEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             + + + EL        K     NM  +VL SR  LCIH +
Sbjct:   118 LSQAMREL--------KRTAYANMKSVVLGSRDQLCIHPD 149

 Score = 66 (28.3 bits), Expect = 1.0e-19, Sum P(4) = 1.0e-19
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
             +++ + DYG ++  D RF    +  +L KWI+ +L
Sbjct:   694 VIRHRNDYGAILLCDARFQDMSQVQQLSKWIRGHL 728

 Score = 60 (26.2 bits), Expect = 1.0e-19, Sum P(4) = 1.0e-19
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query:   356 VLYFCCLDSSLAIKPVFD-RFQTVVITSGTLSPLDMYPKILNFQ-PVIMH 403
             ++ F C +    ++ + +   ++V++TSGTL+PL   P I     PV  H
Sbjct:   453 IINFWCFNPGFGMEQLLNAHVRSVILTSGTLAPLK--PLIAELAIPVAQH 500

 Score = 42 (19.8 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
 Identities = 14/68 (20%), Positives = 27/68 (39%)

Query:   271 QQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDF---SSLVVITHL 327
             +Q + +     ++ +   VC E +P   CA      ++    T  T F   S L     +
Sbjct:   752 EQTMAQPEERVVEPLLQTVCKEEQPTLACASSSQITIKREPGTGGTKFQLASELAAQAEM 811

Query:   328 ATLVSSYT 335
             A  + ++T
Sbjct:   812 ANTIKTWT 819

 Score = 39 (18.8 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query:   261 EEHLKTRLRVQQVVQESPATFLKDISSKVCIERKP 295
             EE +   L +Q V +E   T     SS++ I+R+P
Sbjct:   759 EERVVEPL-LQTVCKEEQPTLACASSSQITIKREP 792

 Score = 38 (18.4 bits), Expect = 4.6e-10, Sum P(3) = 4.6e-10
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query:   634 IDNLQKRKLLFIETQDALDSRSVSKERDG 662
             +D+L   K + +E + A+D   V  + +G
Sbjct:   306 LDDLTLLKEMLLELEKAIDGVVVDNKAEG 334

 Score = 37 (18.1 bits), Expect = 1.7e-05, Sum P(4) = 1.7e-05
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query:    22 VRDRHKAGENIPVCDFYEKFDAV-GREAPLAPGVY 55
             + D  K G+ + +C ++   + V G +    P  Y
Sbjct:   195 IEDLVKVGQRLKMCPYFASKELVNGADITFMPYNY 229


>UNIPROTKB|B4NDG5 [details] [associations]
            symbol:GK24923 "Regulator of telomere elongation helicase 1
            homolog" species:7260 "Drosophila willistoni" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
            "ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0010569 "regulation of double-strand break repair via
            homologous recombination" evidence=ISS] InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
            PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
            GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
            SMART:SM00487 EMBL:CH964239 GO:GO:0010569 eggNOG:COG1199
            TIGRFAMs:TIGR00604 KO:K11136 OMA:PFPPLKD OrthoDB:EOG4S4MX7
            RefSeq:XP_002071885.1 STRING:B4NDG5 EnsemblMetazoa:FBtr0255574
            GeneID:6648559 KEGG:dwi:Dwil_GK24923 FlyBase:FBgn0226882
            InParanoid:B4NDG5 Uniprot:B4NDG5
        Length = 998

 Score = 171 (65.3 bits), Expect = 1.7e-19, Sum P(4) = 1.7e-19
 Identities = 32/92 (34%), Positives = 56/92 (60%)

Query:    52 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 111
             P +  I  L ++G++L +CPYF +++ +  A I    Y+YLLDP        EL+ +++V
Sbjct:   193 PSIMDIEDLVKVGQKLKMCPYFASKELVNDADITFMPYNYLLDPMARKANKIELS-NTIV 251

Query:   112 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
             + DEAHNI+ +C +S SV+I    +  A+ ++
Sbjct:   252 ILDEAHNIEKICEESASVQIKSSDVAVAIEDV 283

 Score = 171 (65.3 bits), Expect = 1.0e-14, Sum P(3) = 1.0e-14
 Identities = 32/92 (34%), Positives = 56/92 (60%)

Query:   707 PGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVV 766
             P +  I  L ++G++L +CPYF +++ +  A I    Y+YLLDP        EL+ +++V
Sbjct:   193 PSIMDIEDLVKVGQKLKMCPYFASKELVNDADITFMPYNYLLDPMARKANKIELS-NTIV 251

Query:   767 VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
             + DEAHNI+ +C +S SV+I    +  A+ ++
Sbjct:   252 ILDEAHNIEKICEESASVQIKSSDVAVAIEDV 283

 Score = 118 (46.6 bits), Expect = 1.7e-19, Sum P(4) = 1.7e-19
 Identities = 23/67 (34%), Positives = 41/67 (61%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L S F+ RD+   I + GQ +++++ +VPDG++ FF SY  L   V +W   G+  ++  
Sbjct:   532 LISNFKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNKCVDAWQTSGLWADIAA 591

Query:   640 RKLLFIE 646
             +K +F+E
Sbjct:   592 KKPIFLE 598

 Score = 89 (36.4 bits), Expect = 1.0e-14, Sum P(3) = 1.0e-14
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query:   427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAH 486
             +I  +PV FP+E  Y  Q A+M ++   L    + +LE P+GTGKT SLL   +A++   
Sbjct:     5 IIAGIPVHFPFEP-YEVQRAFMEKVIICLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTR 63

Query:   487 PLDVTK 492
               +  K
Sbjct:    64 QSEQQK 69

 Score = 88 (36.0 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
 Identities = 23/94 (24%), Positives = 51/94 (54%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLS------SRKNLCIHSEF 543
             V  ++  S T+  ++ ++ ELA     ++++   ++ + + +        R+ L   S F
Sbjct:   479 VRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQSQVYVKIIGTGPDRQQLI--SNF 536

Query:   544 ETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 577
             + RD+   I + GQ +++++ +VPDG++ FF SY
Sbjct:   537 KNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSY 570

 Score = 79 (32.9 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
 Identities = 31/106 (29%), Positives = 49/106 (46%)

Query:   439 YIYPEQYAYMVELKKALDAKGHCLLEMPSGT--GKTTSLLSLIVAYMNAHPLDVTKLLYC 496
             +I   Q     +++K  DA  +  +  P+G   G+   L +L V    A+   V K++Y 
Sbjct:    59 WIRTRQSEQQKQIRKLQDAANNTKVG-PTGIVPGEAAEL-ALTVG--KANNWGVPKVIYA 114

Query:   497 SRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             SRT  ++ + + EL        K +    M  +VL SR  LCIH E
Sbjct:   115 SRTHSQLTQAMREL--------KRSAYAGMRSVVLGSRDQLCIHPE 152

 Score = 67 (28.6 bits), Expect = 1.7e-19, Sum P(4) = 1.7e-19
 Identities = 11/35 (31%), Positives = 22/35 (62%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
             +++ + DYG ++  D RF  + +  +L KWI+ +L
Sbjct:   700 VIRHRHDYGAILLCDSRFQDNSQVQQLSKWIRGHL 734

 Score = 62 (26.9 bits), Expect = 1.7e-19, Sum P(4) = 1.7e-19
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query:   356 VLYFCCLDSSLAIKPVFD-RFQTVVITSGTLSPLDMYPKILNFQ-PVIMH 403
             V+ F C +    ++ + + + ++V++TSGTL+PL   P I     PV  H
Sbjct:   459 VINFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLK--PLIAELAIPVAQH 506


>UNIPROTKB|Q9NZ71 [details] [associations]
            symbol:RTEL1 "Regulator of telomere elongation helicase 1"
            species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0046872 "metal ion
            binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
            binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IMP] [GO:0000723 "telomere maintenance"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005524 "ATP
            binding" evidence=IMP] [GO:0010569 "regulation of double-strand
            break repair via homologous recombination" evidence=IMP]
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
            PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
            GO:GO:0005524 GO:GO:0005634 EMBL:CH471077 GO:GO:0046872
            GO:GO:0003677 GO:GO:0006281 GO:GO:0051539 GO:GO:0004003
            EMBL:AF217796 GO:GO:0000723 GO:GO:0010569 eggNOG:COG1199
            TIGRFAMs:TIGR00604 EMBL:AL353715 KO:K11136 CTD:51750
            OrthoDB:EOG412M4Q EMBL:AF217795 EMBL:AB029011 EMBL:AK000485
            EMBL:AK302508 EMBL:AK299332 EMBL:AK304798 EMBL:AL080127
            IPI:IPI00219849 IPI:IPI00413900 IPI:IPI00718800 IPI:IPI00745153
            IPI:IPI00929254 IPI:IPI00929311 IPI:IPI00929712 IPI:IPI00929751
            PIR:T12516 PIR:T45294 RefSeq:NP_057518.1 RefSeq:NP_116575.3
            UniGene:Hs.434878 ProteinModelPortal:Q9NZ71 SMR:Q9NZ71
            IntAct:Q9NZ71 STRING:Q9NZ71 PhosphoSite:Q9NZ71 DMDM:229462743
            PaxDb:Q9NZ71 PRIDE:Q9NZ71 GeneID:51750 KEGG:hsa:51750
            UCSC:uc002yfu.2 UCSC:uc002yfx.1 UCSC:uc011abd.2 UCSC:uc021wge.1
            GeneCards:GC20P062289 HGNC:HGNC:15888 MIM:608833 neXtProt:NX_Q9NZ71
            PharmGKB:PA134915625 HOVERGEN:HBG108423 InParanoid:Q9NZ71
            GenomeRNAi:51750 NextBio:55835 ArrayExpress:Q9NZ71 Bgee:Q9NZ71
            Genevestigator:Q9NZ71 GermOnline:ENSG00000026036 Uniprot:Q9NZ71
        Length = 1219

 Score = 169 (64.5 bits), Expect = 4.5e-19, Sum P(4) = 4.5e-19
 Identities = 39/124 (31%), Positives = 63/124 (50%)

Query:   690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
             C FY   +    E  LA  +  I  L + G +  +CPY+L+R     A I+   Y+YLLD
Sbjct:   172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231

Query:   750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
              K     + +L + +VV+FDEAHN++ +C +S S  +    +   +  I Q LE   K  
Sbjct:   232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290

Query:   809 KEAD 812
             ++ +
Sbjct:   291 QQGE 294

 Score = 169 (64.5 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
 Identities = 39/124 (31%), Positives = 63/124 (50%)

Query:    35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
             C FY   +    E  LA  +  I  L + G +  +CPY+L+R     A I+   Y+YLLD
Sbjct:   172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231

Query:    95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
              K     + +L + +VV+FDEAHN++ +C +S S  +    +   +  I Q LE   K  
Sbjct:   232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290

Query:   154 KEAD 157
             ++ +
Sbjct:   291 QQGE 294

 Score = 94 (38.1 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L S F+ R     + + G+ L +IA VVP G++ FF SY  +E  +  W  + +   ++ 
Sbjct:   525 LSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEA 584

Query:   640 RKLLFIE 646
              K LF+E
Sbjct:   585 LKPLFVE 591

 Score = 88 (36.0 bits), Expect = 4.5e-19, Sum P(4) = 4.5e-19
 Identities = 20/57 (35%), Positives = 35/57 (61%)

Query:   426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
             ++++ + V FP++  Y  Q  YM ++ + L  K + +LE P+GTGKT  LL   +A+
Sbjct:     4 IVLNGVTVDFPFQP-YKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAW 59

 Score = 86 (35.3 bits), Expect = 4.5e-19, Sum P(4) = 4.5e-19
 Identities = 20/66 (30%), Positives = 36/66 (54%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLT--DNLTNLSTEEAVQLSKRWLRQM 906
             +++ + DYG +   D RFA +D R++LP W++ ++   DN  ++  + A Q  +   R M
Sbjct:   698 VIRHRQDYGAVFLCDHRFAFADARAQLPSWVRPHVRVYDNFGHVIRDVA-QFFRVAERTM 756

Query:   907 AQPFTR 912
               P  R
Sbjct:   757 PAPAPR 762

 Score = 75 (31.5 bits), Expect = 4.5e-19, Sum P(4) = 4.5e-19
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query:   489 DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
             D+ K++Y SRT  ++ +V+ EL          N        VL SR+ LCIH E + ++
Sbjct:   105 DIPKIIYASRTHSQLTQVINEL---------RNTSYRPKVCVLGSREQLCIHPEVKKQE 154

 Score = 72 (30.4 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
 Identities = 26/100 (26%), Positives = 44/100 (44%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINM----TGLVLSSRKNLCIHSEFET 545
             V  L+  S T+  +     E+   F   +++   I+      G+V        + S F+ 
Sbjct:   472 VRSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDR 531

Query:   546 RDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
             R     + + G+ L +IA VVP G++ FF SY  +E   E
Sbjct:   532 RFSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLE 571

 Score = 45 (20.9 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
 Identities = 11/50 (22%), Positives = 26/50 (52%)

Query:   343 EPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDR-FQTVVITSGTLSPLDMY 391
             + +S  A      VL + C     ++  +  +  +++++TSGTL+P+  +
Sbjct:   439 DAWSTTAARKRGKVLSYWCFSPGHSMHELVRQGVRSLILTSGTLAPVSSF 488

 Score = 39 (18.8 bits), Expect = 4.9e-11, Sum P(3) = 4.9e-11
 Identities = 29/129 (22%), Positives = 50/129 (38%)

Query:   170 EGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTA--EHFVGF--LKRFIEYLKTRLR 225
             E LRD  SAR+        + PD  L     GN   A  +    +  + + I   +T  +
Sbjct:    61 EHLRDGISARKIAERAQGELFPDRALSSW--GNAAAAAGDPIACYTDIPKIIYASRTHSQ 118

Query:   226 VQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTE------EHLKTRLRVQQVVQESPA 279
             + QV+ E     L++ S +P   ++    +     E       HL+  L  ++V   S  
Sbjct:   119 LTQVINE-----LRNTSYRPKVCVLGSREQLCIHPEVKKQESNHLQIHLCRKKVASRS-C 172

Query:   280 TFLKDISSK 288
              F  ++  K
Sbjct:   173 HFYNNVEEK 181


>UNIPROTKB|A4K436 [details] [associations]
            symbol:RTEL1 "Regulator of telomere elongation helicase 1"
            species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=ISS]
            [GO:0010569 "regulation of double-strand break repair via
            homologous recombination" evidence=ISS] [GO:0005524 "ATP binding"
            evidence=ISS] [GO:0000723 "telomere maintenance" evidence=ISS]
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
            [GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
            [GO:0046872 "metal ion binding" evidence=IEA] [GO:0006281 "DNA
            repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
            PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
            GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 GO:GO:0000723
            GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
            HOGENOM:HOG000007558 KO:K11136 EMBL:DQ323152 EMBL:DQ323153
            EMBL:DQ420360 EMBL:DQ420361 EMBL:DQ420362 EMBL:DQ420363
            IPI:IPI00840795 IPI:IPI00905335 IPI:IPI00930023 IPI:IPI00930030
            IPI:IPI00930035 RefSeq:NP_001091044.1 UniGene:Bt.6256
            ProteinModelPortal:A4K436 GeneID:505721 KEGG:bta:505721 CTD:51750
            InParanoid:A4K434 OrthoDB:EOG412M4Q NextBio:20867282 Uniprot:A4K436
        Length = 1216

 Score = 175 (66.7 bits), Expect = 5.2e-19, Sum P(4) = 5.2e-19
 Identities = 42/133 (31%), Positives = 66/133 (49%)

Query:    35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
             C FY   +    E  LA  +  I  L   G +  LCPY+L+R     A I+   Y+YLLD
Sbjct:   171 CHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLD 230

Query:    95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEM- 153
              K       +L + +VV+FDEAHN++ +C ++ S  +   T       +  ++  L+E  
Sbjct:   231 AKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDL---TPHDVASELDVIDRVLEERT 286

Query:   154 KEADSAKLREEYA 166
             K A  A+L  E++
Sbjct:   287 KVAQQAELHPEFS 299

 Score = 175 (66.7 bits), Expect = 1.0e-18, Sum P(4) = 1.0e-18
 Identities = 42/133 (31%), Positives = 66/133 (49%)

Query:   690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
             C FY   +    E  LA  +  I  L   G +  LCPY+L+R     A I+   Y+YLLD
Sbjct:   171 CHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLD 230

Query:   750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEM- 808
              K       +L + +VV+FDEAHN++ +C ++ S  +   T       +  ++  L+E  
Sbjct:   231 AKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDL---TPHDVASELDVIDRVLEERT 286

Query:   809 KEADSAKLREEYA 821
             K A  A+L  E++
Sbjct:   287 KVAQQAELHPEFS 299

 Score = 102 (41.0 bits), Expect = 5.2e-19, Sum P(4) = 5.2e-19
 Identities = 23/67 (34%), Positives = 37/67 (55%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L S F+ R     + + G++L +I+ VVP G++ FF SY  +E  +  W  +     L+ 
Sbjct:   523 LSSAFDRRFSDECLSSLGKVLSNISRVVPHGLLVFFPSYPVMEKSLEFWRARDFTRKLEV 582

Query:   640 RKLLFIE 646
             RK LF+E
Sbjct:   583 RKPLFVE 589

 Score = 84 (34.6 bits), Expect = 5.2e-19, Sum P(4) = 5.2e-19
 Identities = 12/35 (34%), Positives = 24/35 (68%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
             +++ + DYG +   D RFA +D R++LP W++ ++
Sbjct:   696 VIRHRHDYGAVFLCDHRFAHADTRAQLPSWVRPHV 730

 Score = 80 (33.2 bits), Expect = 1.0e-18, Sum P(4) = 1.0e-18
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query:   426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
             + +  + V FP++  Y  Q  YM ++ + L  K + +LE P+GTGKT  LL   +A+
Sbjct:     4 ITLKGVTVDFPFQP-YKCQEEYMSKVLECLQEKVNGILESPTGTGKTLCLLCSTLAW 59

 Score = 75 (31.5 bits), Expect = 1.0e-18, Sum P(4) = 1.0e-18
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query:   489 DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
             D+ K++Y SRT  ++ +V+ EL          N        VL SR+ LCIH E + ++
Sbjct:   104 DIPKIIYASRTHSQLTQVISEL---------RNTSYRPRVCVLGSREQLCIHPEVKKQE 153

 Score = 75 (31.5 bits), Expect = 4.0e-15, Sum P(3) = 4.0e-15
 Identities = 25/100 (25%), Positives = 45/100 (45%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINM----TGLVLSSRKNLCIHSEFET 545
             V  L+  S T+  +     E+   F   +++   IN      G++        + S F+ 
Sbjct:   470 VRTLILTSGTLAPMASFSLEMQIPFPVCLENPHVINQHQIWVGVIPKGPDGAQLSSAFDR 529

Query:   546 RDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
             R     + + G++L +I+ VVP G++ FF SY  +E   E
Sbjct:   530 RFSDECLSSLGKVLSNISRVVPHGLLVFFPSYPVMEKSLE 569

 Score = 56 (24.8 bits), Expect = 5.2e-19, Sum P(4) = 5.2e-19
 Identities = 11/37 (29%), Positives = 23/37 (62%)

Query:   353 PNPVLYFCCLDSSLAIKPVFDR-FQTVVITSGTLSPL 388
             P  VL + C     +++ +  +  +T+++TSGTL+P+
Sbjct:   447 PGKVLSYWCFSPGHSMRELVRQGVRTLILTSGTLAPM 483

 Score = 43 (20.2 bits), Expect = 7.1e-12, Sum P(3) = 7.1e-12
 Identities = 28/129 (21%), Positives = 52/129 (40%)

Query:   170 EGLRDAQSARETDVVLANPVLPDEILQE---VVP-GNIRTAEHFVGFLKRFIEYLKTRLR 225
             E LRDA SAR      +  + PD  L      +P G++     +   + + I   +T  +
Sbjct:    61 EHLRDAVSARRIAERASGELFPDRTLASWGNAIPEGDVPAC--YTD-IPKIIYASRTHSQ 117

Query:   226 VQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTE------EHLKTRLRVQQVVQESPA 279
             + QV+ E     L++ S +P   ++    +     E       H++  L  ++V   S  
Sbjct:   118 LTQVISE-----LRNTSYRPRVCVLGSREQLCIHPEVKKQESNHMQVHLCRRKVASRS-C 171

Query:   280 TFLKDISSK 288
              F  ++  K
Sbjct:   172 HFYNNVEEK 180

 Score = 38 (18.4 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query:   446 AYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
             AY+ ++++ L A G+  L     T K       +VA + A
Sbjct:  1065 AYLADVRRTLGAAGYSQLLTALTTYKQDDDFEKVVAVVAA 1104

 Score = 38 (18.4 bits), Expect = 4.6e-05, Sum P(4) = 4.6e-05
 Identities = 20/78 (25%), Positives = 37/78 (47%)

Query:   219 YLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESP 278
             YL   L+ Q  +   P  +L D  S+ A  +  +    IF  E H      V+++ +E+ 
Sbjct:   209 YLSRNLKQQADIIFMPYNYLLDAKSRRAHGIDLKGTVVIFD-EAH-----NVEKMCEEAA 262

Query:   279 ATFLK--DISSKV-CIER 293
             +  L   D++S++  I+R
Sbjct:   263 SFDLTPHDVASELDVIDR 280


>UNIPROTKB|F6WH68 [details] [associations]
            symbol:RTEL1 "Protein RTEL1-TNFRSF6B" species:9606 "Homo
            sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 EMBL:AL121845
            TIGRFAMs:TIGR00604 EMBL:AL353715 HGNC:HGNC:15888 OMA:VLKMQFL
            HGNC:HGNC:44095 IPI:IPI01021192 SMR:F6WH68 Ensembl:ENST00000318100
            Ensembl:ENST00000482936 Uniprot:F6WH68
        Length = 1400

 Score = 169 (64.5 bits), Expect = 8.6e-19, Sum P(4) = 8.6e-19
 Identities = 39/124 (31%), Positives = 63/124 (50%)

Query:   690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
             C FY   +    E  LA  +  I  L + G +  +CPY+L+R     A I+   Y+YLLD
Sbjct:   172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231

Query:   750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
              K     + +L + +VV+FDEAHN++ +C +S S  +    +   +  I Q LE   K  
Sbjct:   232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290

Query:   809 KEAD 812
             ++ +
Sbjct:   291 QQGE 294

 Score = 169 (64.5 bits), Expect = 2.3e-16, Sum P(4) = 2.3e-16
 Identities = 39/124 (31%), Positives = 63/124 (50%)

Query:    35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
             C FY   +    E  LA  +  I  L + G +  +CPY+L+R     A I+   Y+YLLD
Sbjct:   172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231

Query:    95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
              K     + +L + +VV+FDEAHN++ +C +S S  +    +   +  I Q LE   K  
Sbjct:   232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290

Query:   154 KEAD 157
             ++ +
Sbjct:   291 QQGE 294

 Score = 94 (38.1 bits), Expect = 2.3e-16, Sum P(4) = 2.3e-16
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L S F+ R     + + G+ L +IA VVP G++ FF SY  +E  +  W  + +   ++ 
Sbjct:   525 LSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEA 584

Query:   640 RKLLFIE 646
              K LF+E
Sbjct:   585 LKPLFVE 591

 Score = 88 (36.0 bits), Expect = 8.6e-19, Sum P(4) = 8.6e-19
 Identities = 20/57 (35%), Positives = 35/57 (61%)

Query:   426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
             ++++ + V FP++  Y  Q  YM ++ + L  K + +LE P+GTGKT  LL   +A+
Sbjct:     4 IVLNGVTVDFPFQP-YKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAW 59

 Score = 86 (35.3 bits), Expect = 8.6e-19, Sum P(4) = 8.6e-19
 Identities = 20/66 (30%), Positives = 36/66 (54%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLT--DNLTNLSTEEAVQLSKRWLRQM 906
             +++ + DYG +   D RFA +D R++LP W++ ++   DN  ++  + A Q  +   R M
Sbjct:   698 VIRHRQDYGAVFLCDHRFAFADARAQLPSWVRPHVRVYDNFGHVIRDVA-QFFRVAERTM 756

Query:   907 AQPFTR 912
               P  R
Sbjct:   757 PAPAPR 762

 Score = 75 (31.5 bits), Expect = 8.6e-19, Sum P(4) = 8.6e-19
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query:   489 DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
             D+ K++Y SRT  ++ +V+ EL          N        VL SR+ LCIH E + ++
Sbjct:   105 DIPKIIYASRTHSQLTQVINEL---------RNTSYRPKVCVLGSREQLCIHPEVKKQE 154

 Score = 72 (30.4 bits), Expect = 3.6e-14, Sum P(3) = 3.6e-14
 Identities = 26/100 (26%), Positives = 44/100 (44%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINM----TGLVLSSRKNLCIHSEFET 545
             V  L+  S T+  +     E+   F   +++   I+      G+V        + S F+ 
Sbjct:   472 VRSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDR 531

Query:   546 RDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
             R     + + G+ L +IA VVP G++ FF SY  +E   E
Sbjct:   532 RFSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLE 571

 Score = 45 (20.9 bits), Expect = 2.3e-16, Sum P(4) = 2.3e-16
 Identities = 11/50 (22%), Positives = 26/50 (52%)

Query:   343 EPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDR-FQTVVITSGTLSPLDMY 391
             + +S  A      VL + C     ++  +  +  +++++TSGTL+P+  +
Sbjct:   439 DAWSTTAARKRGKVLSYWCFSPGHSMHELVRQGVRSLILTSGTLAPVSSF 488

 Score = 39 (18.8 bits), Expect = 7.9e-11, Sum P(3) = 7.9e-11
 Identities = 29/129 (22%), Positives = 50/129 (38%)

Query:   170 EGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTA--EHFVGF--LKRFIEYLKTRLR 225
             E LRD  SAR+        + PD  L     GN   A  +    +  + + I   +T  +
Sbjct:    61 EHLRDGISARKIAERAQGELFPDRALSSW--GNAAAAAGDPIACYTDIPKIIYASRTHSQ 118

Query:   226 VQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTE------EHLKTRLRVQQVVQESPA 279
             + QV+ E     L++ S +P   ++    +     E       HL+  L  ++V   S  
Sbjct:   119 LTQVINE-----LRNTSYRPKVCVLGSREQLCIHPEVKKQESNHLQIHLCRKKVASRS-C 172

Query:   280 TFLKDISSK 288
              F  ++  K
Sbjct:   173 HFYNNVEEK 181


>WB|WBGene00009124 [details] [associations]
            symbol:rtel-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
            acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0006139 "nucleobase-containing compound metabolic process"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016817
            "hydrolase activity, acting on acid anhydrides" evidence=IEA]
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
            PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
            GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 GO:GO:0010569
            eggNOG:COG1199 TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199
            EMBL:Z79754 KO:K11136 OMA:PFPPLKD HOGENOM:HOG000154218 EMBL:Z83224
            PIR:T21356 RefSeq:NP_492769.1 ProteinModelPortal:Q93575 SMR:Q93575
            IntAct:Q93575 MINT:MINT-227415 STRING:Q93575 PaxDb:Q93575
            EnsemblMetazoa:F25H2.13.1 EnsemblMetazoa:F25H2.13.2 GeneID:172946
            KEGG:cel:CELE_F25H2.13 UCSC:F25H2.13 CTD:172946 WormBase:F25H2.13
            InParanoid:Q93575 NextBio:877635 Uniprot:Q93575
        Length = 994

 Score = 181 (68.8 bits), Expect = 4.7e-18, Sum P(4) = 4.7e-18
 Identities = 37/125 (29%), Positives = 70/125 (56%)

Query:    35 CDFYEKFDAVGREAP---LAPG-VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 90
             C +Y KFDA   +     L  G    I    ++G +  LCPYF++RQ    A++++  Y+
Sbjct:   169 CHYYNKFDACTTDKMTEFLDKGEAMDIEDFVKLGTQNSLCPYFMSRQRSETAELILLPYN 228

Query:    91 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 150
             Y++DPK+      +L ++S+V+FDEAHN++++C  + S  +   +I   +  ++ +   L
Sbjct:   229 YIIDPKMRRRYKLDL-KNSIVIFDEAHNLESICESNASAELTSTSIALCIEELKKVLALL 287

Query:   151 KEMKE 155
              + +E
Sbjct:   288 VDEEE 292

 Score = 181 (68.8 bits), Expect = 2.4e-17, Sum P(4) = 2.4e-17
 Identities = 37/125 (29%), Positives = 70/125 (56%)

Query:   690 CDFYEKFDAVGREAP---LAPG-VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 745
             C +Y KFDA   +     L  G    I    ++G +  LCPYF++RQ    A++++  Y+
Sbjct:   169 CHYYNKFDACTTDKMTEFLDKGEAMDIEDFVKLGTQNSLCPYFMSRQRSETAELILLPYN 228

Query:   746 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 805
             Y++DPK+      +L ++S+V+FDEAHN++++C  + S  +   +I   +  ++ +   L
Sbjct:   229 YIIDPKMRRRYKLDL-KNSIVIFDEAHNLESICESNASAELTSTSIALCIEELKKVLALL 287

Query:   806 KEMKE 810
              + +E
Sbjct:   288 VDEEE 292

 Score = 91 (37.1 bits), Expect = 4.7e-18, Sum P(4) = 4.7e-18
 Identities = 28/120 (23%), Positives = 57/120 (47%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWY--------DQ 631
             L   F+ R ++  +    + L+ +  V+P G++ FF+SY  ++ +VA+W         ++
Sbjct:   536 LAGSFQNRKNLDYVTGVAEALLRVMEVIPQGILIFFSSYSQMDELVATWKTTKWSSNSNE 595

Query:   632 GIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCD 691
                + ++K K + +E + A +  +  + R  + V  + H     +V  R K  E I  CD
Sbjct:   596 SFWEKMEKTKRVVVEPR-AKEELAAIRLRYTQGVSEQ-HGAALLAVC-RGKVSEGIDFCD 652

 Score = 88 (36.0 bits), Expect = 2.4e-17, Sum P(4) = 2.4e-17
 Identities = 26/63 (41%), Positives = 33/63 (52%)

Query:   431 LPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAH---- 486
             L V FP+E  Y  Q  +M  +   LD K    LE P+GTGKT SLL   +A++       
Sbjct:    17 LSVKFPFEP-YECQRIFMKNVVDVLDRKLDAALESPTGTGKTLSLLCSTLAWVQRQKETK 75

Query:   487 PLD 489
             PLD
Sbjct:    76 PLD 78

 Score = 76 (31.8 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
 Identities = 19/101 (18%), Positives = 46/101 (45%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN----MTGLVLSSRKNLCIHSEFET 545
             V  +L  S T+  I+     +   F   +++   +     +T +V   ++   +   F+ 
Sbjct:   484 VRNVLLASGTLSPIQAFTYNMGLNFGAILENEHALKQVPVLTSIVTRGKRG-GLAGSFQN 542

Query:   546 RDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFET 586
             R ++  +    + L+ +  V+P G++ FF+SY  ++ +  T
Sbjct:   543 RKNLDYVTGVAEALLRVMEVIPQGILIFFSSYSQMDELVAT 583

 Score = 67 (28.6 bits), Expect = 4.7e-18, Sum P(4) = 4.7e-18
 Identities = 13/41 (31%), Positives = 25/41 (60%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTN 889
             +L+ K D+G ++  D R+A S K    PKW++  ++ + T+
Sbjct:   715 VLRHKDDFGTVVLMDTRYA-SAKPEMFPKWLRNTISRSDTD 754

 Score = 64 (27.6 bits), Expect = 4.7e-18, Sum P(4) = 4.7e-18
 Identities = 21/74 (28%), Positives = 38/74 (51%)

Query:   356 VLYFCCLDSSLAIKPVFDR-FQTVVITSGTLSPLDM--YPKILNFQPVIMHSFSMTLARP 412
             + YFC   +S++++ +  R  + V++ SGTLSP+    Y   LNF  ++ +  ++    P
Sbjct:   465 IKYFC-FQASISMRMLKMRGVRNVLLASGTLSPIQAFTYNMGLNFGAILENEHALKQV-P 522

Query:   413 CLLPMVRENYAMGL 426
              L  +V      GL
Sbjct:   523 VLTSIVTRGKRGGL 536

 Score = 60 (26.2 bits), Expect = 2.4e-17, Sum P(4) = 2.4e-17
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             V  + Y SRT  ++E+VV EL R    ++K          +L SR++ CI+ +
Sbjct:   102 VPTIFYASRTHSQLEQVVHELNRTEYKWVKTT--------ILGSREHFCINQK 146

 Score = 46 (21.3 bits), Expect = 3.0e-16, Sum P(4) = 3.0e-16
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query:   503 IEKVVEELARLFDYYIKHNEEINMT 527
             +E++V+ L     Y +  NEE+ +T
Sbjct:   378 VERLVDVLRDAISYLLSKNEEVALT 402


>UNIPROTKB|Q93575 [details] [associations]
            symbol:rtel-1 "Regulator of telomere elongation helicase 1
            homolog" species:6239 "Caenorhabditis elegans" [GO:0005634
            "nucleus" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            [GO:0010569 "regulation of double-strand break repair via
            homologous recombination" evidence=IGI] [GO:0004003 "ATP-dependent
            DNA helicase activity" evidence=ISS] InterPro:IPR006554
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
            GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
            GO:GO:0051539 GO:GO:0004003 GO:GO:0010569 eggNOG:COG1199
            TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199 EMBL:Z79754
            KO:K11136 OMA:PFPPLKD HOGENOM:HOG000154218 EMBL:Z83224 PIR:T21356
            RefSeq:NP_492769.1 ProteinModelPortal:Q93575 SMR:Q93575
            IntAct:Q93575 MINT:MINT-227415 STRING:Q93575 PaxDb:Q93575
            EnsemblMetazoa:F25H2.13.1 EnsemblMetazoa:F25H2.13.2 GeneID:172946
            KEGG:cel:CELE_F25H2.13 UCSC:F25H2.13 CTD:172946 WormBase:F25H2.13
            InParanoid:Q93575 NextBio:877635 Uniprot:Q93575
        Length = 994

 Score = 181 (68.8 bits), Expect = 4.7e-18, Sum P(4) = 4.7e-18
 Identities = 37/125 (29%), Positives = 70/125 (56%)

Query:    35 CDFYEKFDAVGREAP---LAPG-VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 90
             C +Y KFDA   +     L  G    I    ++G +  LCPYF++RQ    A++++  Y+
Sbjct:   169 CHYYNKFDACTTDKMTEFLDKGEAMDIEDFVKLGTQNSLCPYFMSRQRSETAELILLPYN 228

Query:    91 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 150
             Y++DPK+      +L ++S+V+FDEAHN++++C  + S  +   +I   +  ++ +   L
Sbjct:   229 YIIDPKMRRRYKLDL-KNSIVIFDEAHNLESICESNASAELTSTSIALCIEELKKVLALL 287

Query:   151 KEMKE 155
              + +E
Sbjct:   288 VDEEE 292

 Score = 181 (68.8 bits), Expect = 2.4e-17, Sum P(4) = 2.4e-17
 Identities = 37/125 (29%), Positives = 70/125 (56%)

Query:   690 CDFYEKFDAVGREAP---LAPG-VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 745
             C +Y KFDA   +     L  G    I    ++G +  LCPYF++RQ    A++++  Y+
Sbjct:   169 CHYYNKFDACTTDKMTEFLDKGEAMDIEDFVKLGTQNSLCPYFMSRQRSETAELILLPYN 228

Query:   746 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 805
             Y++DPK+      +L ++S+V+FDEAHN++++C  + S  +   +I   +  ++ +   L
Sbjct:   229 YIIDPKMRRRYKLDL-KNSIVIFDEAHNLESICESNASAELTSTSIALCIEELKKVLALL 287

Query:   806 KEMKE 810
              + +E
Sbjct:   288 VDEEE 292

 Score = 91 (37.1 bits), Expect = 4.7e-18, Sum P(4) = 4.7e-18
 Identities = 28/120 (23%), Positives = 57/120 (47%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWY--------DQ 631
             L   F+ R ++  +    + L+ +  V+P G++ FF+SY  ++ +VA+W         ++
Sbjct:   536 LAGSFQNRKNLDYVTGVAEALLRVMEVIPQGILIFFSSYSQMDELVATWKTTKWSSNSNE 595

Query:   632 GIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCD 691
                + ++K K + +E + A +  +  + R  + V  + H     +V  R K  E I  CD
Sbjct:   596 SFWEKMEKTKRVVVEPR-AKEELAAIRLRYTQGVSEQ-HGAALLAVC-RGKVSEGIDFCD 652

 Score = 88 (36.0 bits), Expect = 2.4e-17, Sum P(4) = 2.4e-17
 Identities = 26/63 (41%), Positives = 33/63 (52%)

Query:   431 LPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAH---- 486
             L V FP+E  Y  Q  +M  +   LD K    LE P+GTGKT SLL   +A++       
Sbjct:    17 LSVKFPFEP-YECQRIFMKNVVDVLDRKLDAALESPTGTGKTLSLLCSTLAWVQRQKETK 75

Query:   487 PLD 489
             PLD
Sbjct:    76 PLD 78

 Score = 76 (31.8 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
 Identities = 19/101 (18%), Positives = 46/101 (45%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN----MTGLVLSSRKNLCIHSEFET 545
             V  +L  S T+  I+     +   F   +++   +     +T +V   ++   +   F+ 
Sbjct:   484 VRNVLLASGTLSPIQAFTYNMGLNFGAILENEHALKQVPVLTSIVTRGKRG-GLAGSFQN 542

Query:   546 RDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFET 586
             R ++  +    + L+ +  V+P G++ FF+SY  ++ +  T
Sbjct:   543 RKNLDYVTGVAEALLRVMEVIPQGILIFFSSYSQMDELVAT 583

 Score = 67 (28.6 bits), Expect = 4.7e-18, Sum P(4) = 4.7e-18
 Identities = 13/41 (31%), Positives = 25/41 (60%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTN 889
             +L+ K D+G ++  D R+A S K    PKW++  ++ + T+
Sbjct:   715 VLRHKDDFGTVVLMDTRYA-SAKPEMFPKWLRNTISRSDTD 754

 Score = 64 (27.6 bits), Expect = 4.7e-18, Sum P(4) = 4.7e-18
 Identities = 21/74 (28%), Positives = 38/74 (51%)

Query:   356 VLYFCCLDSSLAIKPVFDR-FQTVVITSGTLSPLDM--YPKILNFQPVIMHSFSMTLARP 412
             + YFC   +S++++ +  R  + V++ SGTLSP+    Y   LNF  ++ +  ++    P
Sbjct:   465 IKYFC-FQASISMRMLKMRGVRNVLLASGTLSPIQAFTYNMGLNFGAILENEHALKQV-P 522

Query:   413 CLLPMVRENYAMGL 426
              L  +V      GL
Sbjct:   523 VLTSIVTRGKRGGL 536

 Score = 60 (26.2 bits), Expect = 2.4e-17, Sum P(4) = 2.4e-17
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             V  + Y SRT  ++E+VV EL R    ++K          +L SR++ CI+ +
Sbjct:   102 VPTIFYASRTHSQLEQVVHELNRTEYKWVKTT--------ILGSREHFCINQK 146

 Score = 46 (21.3 bits), Expect = 3.0e-16, Sum P(4) = 3.0e-16
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query:   503 IEKVVEELARLFDYYIKHNEEINMT 527
             +E++V+ L     Y +  NEE+ +T
Sbjct:   378 VERLVDVLRDAISYLLSKNEEVALT 402


>UNIPROTKB|Q5RE34 [details] [associations]
            symbol:RTEL1 "Regulator of telomere elongation helicase 1"
            species:9601 "Pongo abelii" [GO:0000723 "telomere maintenance"
            evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0010569 "regulation of double-strand
            break repair via homologous recombination" evidence=ISS]
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
            PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
            GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 GO:GO:0000723
            GO:GO:0010569 TIGRFAMs:TIGR00604 KO:K11136 CTD:51750 EMBL:CR857704
            RefSeq:NP_001124929.1 UniGene:Pab.2365 ProteinModelPortal:Q5RE34
            GeneID:100171800 KEGG:pon:100171800 Uniprot:Q5RE34
        Length = 1302

 Score = 169 (64.5 bits), Expect = 5.0e-18, Sum P(4) = 5.0e-18
 Identities = 39/124 (31%), Positives = 63/124 (50%)

Query:   690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
             C FY   +    E  LA  +  I  L + G +  +CPY+L+R     A I+   Y+YLLD
Sbjct:   173 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 232

Query:   750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
              K     + +L + +VV+FDEAHN++ +C +S S  +    +   +  I Q LE   K  
Sbjct:   233 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDIIDQVLEEQTKTA 291

Query:   809 KEAD 812
             ++ +
Sbjct:   292 QQGE 295

 Score = 169 (64.5 bits), Expect = 5.1e-17, Sum P(4) = 5.1e-17
 Identities = 39/124 (31%), Positives = 63/124 (50%)

Query:    35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
             C FY   +    E  LA  +  I  L + G +  +CPY+L+R     A I+   Y+YLLD
Sbjct:   173 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 232

Query:    95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
              K     + +L + +VV+FDEAHN++ +C +S S  +    +   +  I Q LE   K  
Sbjct:   233 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDIIDQVLEEQTKTA 291

Query:   154 KEAD 157
             ++ +
Sbjct:   292 QQGE 295

 Score = 89 (36.4 bits), Expect = 5.1e-17, Sum P(4) = 5.1e-17
 Identities = 21/67 (31%), Positives = 35/67 (52%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L S F+ R     + + G+ L + A VVP G++ FF SY  +E  +  W  + +   ++ 
Sbjct:   526 LSSAFDRRFSEECLSSLGKALGNTARVVPCGLLIFFPSYPVMEKSLEFWRARDLARKMEA 585

Query:   640 RKLLFIE 646
              K LF+E
Sbjct:   586 LKPLFVE 592

 Score = 86 (35.3 bits), Expect = 5.0e-18, Sum P(4) = 5.0e-18
 Identities = 20/66 (30%), Positives = 36/66 (54%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLT--DNLTNLSTEEAVQLSKRWLRQM 906
             +++ + DYG +   D RFA +D R++LP W++ ++   DN  ++  + A Q  +   R M
Sbjct:   699 VIRHRQDYGAVFLCDHRFAFADARAQLPSWVRPHVRVYDNFGHVIRDVA-QFFRVAERTM 757

Query:   907 AQPFTR 912
               P  R
Sbjct:   758 PAPAPR 763

 Score = 79 (32.9 bits), Expect = 5.0e-18, Sum P(4) = 5.0e-18
 Identities = 19/57 (33%), Positives = 34/57 (59%)

Query:   426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
             ++++ + V FP++  Y  Q  YM ++ + L  K + +LE  +GTGKT  LL   +A+
Sbjct:     4 IVLNGVTVDFPFQP-YKCQQEYMTKVLECLQQKVNGILESHTGTGKTLCLLCTTLAW 59

 Score = 75 (31.5 bits), Expect = 5.0e-18, Sum P(4) = 5.0e-18
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query:   489 DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
             D+ K++Y SRT  ++ +V+ EL          N        VL SR+ LCIH E + ++
Sbjct:   106 DIPKIIYASRTHSQLTQVINEL---------RNTSYRPKVCVLGSREQLCIHPEVKKQE 155

 Score = 67 (28.6 bits), Expect = 8.9e-14, Sum P(3) = 8.9e-14
 Identities = 25/100 (25%), Positives = 43/100 (43%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINM----TGLVLSSRKNLCIHSEFET 545
             V  L+  S T+  +     E+   F   +++   I+      G+V        + S F+ 
Sbjct:   473 VRSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDR 532

Query:   546 RDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
             R     + + G+ L + A VVP G++ FF SY  +E   E
Sbjct:   533 RFSEECLSSLGKALGNTARVVPCGLLIFFPSYPVMEKSLE 572

 Score = 55 (24.4 bits), Expect = 5.1e-17, Sum P(4) = 5.1e-17
 Identities = 12/50 (24%), Positives = 28/50 (56%)

Query:   343 EPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDR-FQTVVITSGTLSPLDMY 391
             + +S  A      VL + C    L+++ +  +  +++++TSGTL+P+  +
Sbjct:   440 DAWSTTAARKRGKVLSYWCFSPGLSMRELVRQGVRSLILTSGTLAPVSSF 489

 Score = 37 (18.1 bits), Expect = 8.2e-14, Sum P(4) = 8.2e-14
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query:   170 EGLRDAQSARETDVVLANPVLPDEIL 195
             E LRD  SAR+    +   + PD  L
Sbjct:    61 EHLRDGISARKIAERVQGELFPDRAL 86


>CGD|CAL0004313 [details] [associations]
            symbol:orf19.2000 species:5476 "Candida albicans" [GO:0003678
            "DNA helicase activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0007535
            "donor selection" evidence=IEA] [GO:0045910 "negative regulation of
            DNA recombination" evidence=IEA] [GO:0006270 "DNA replication
            initiation" evidence=IEA] [GO:0007064 "mitotic sister chromatid
            cohesion" evidence=IEA] InterPro:IPR002464 InterPro:IPR006554
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
            InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
            PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0007049
            GO:GO:0004003 EMBL:AACQ01000031 EMBL:AACQ01000030
            RefSeq:XP_719450.1 RefSeq:XP_719578.1 ProteinModelPortal:Q5AD67
            STRING:Q5AD67 GeneID:3638692 GeneID:3638794 KEGG:cal:CaO19.2000
            KEGG:cal:CaO19.9551 eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5
            TIGRFAMs:TIGR00604 Uniprot:Q5AD67
        Length = 842

 Score = 142 (55.0 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
 Identities = 62/276 (22%), Positives = 120/276 (43%)

Query:   615 FTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTS 674
             F+S L L +  AS+ D   ++   K   L    Q  ++ +  SK  D  + D  C  L  
Sbjct:   216 FSSQLRLTNFQASFED---LEERTKYIPLGSRKQLCINEKVRSKGNDQSVNDA-CLDLQR 271

Query:   675 SSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAI 734
              +   ++   +N  +    ++F     +  LA  +  I  L E+G EL +CPY+  R+ I
Sbjct:   272 ETNGCQYLP-KNYMMSSVTKEF----ADLSLAK-IRDIEDLNELGIELNICPYYSVRKGI 325

Query:   735 IHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKA 794
                +I+   Y  +       +++ ++ + S+++ DEAHNI +V     S++I    + K 
Sbjct:   326 EMTEIISLPYQMIFQDTTRKILNLDI-KDSIIIIDEAHNIIDVITSMYSIKITSDQLNKV 384

Query:   795 VGNIQT-LEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQGK 853
             + +++  L   LK +   +   L +   ++ + L    +     V   + V   +I +  
Sbjct:   385 IKSLKIYLNKFLKRLNSGNRINLMK-LIKICQILLKFLNTNSEKVKSGDEVQIQDIFKDS 443

Query:   854 TDYGIMIFADKRFARSDKRS-KLPKWIQ--EYLTDN 886
             T   + I    +F    K + K+  +I+  E  TDN
Sbjct:   444 TGDLVNIHKLDQFLTKSKIAYKIESYIEKTEMETDN 479

 Score = 135 (52.6 bits), Expect = 8.1e-18, Sum P(4) = 8.1e-18
 Identities = 28/109 (25%), Positives = 55/109 (50%)

Query:    54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
             +  I  L E+G EL +CPY+  R+ I   +I+   Y  +       +++ ++ + S+++ 
Sbjct:   300 IRDIEDLNELGIELNICPYYSVRKGIEMTEIISLPYQMIFQDTTRKILNLDI-KDSIIII 358

Query:   114 DEAHNIDNVCVDSLSVRINRRTIEKAVGNIQT-LEGTLKEMKEADSAKL 161
             DEAHNI +V     S++I    + K + +++  L   LK +   +   L
Sbjct:   359 DEAHNIIDVITSMYSIKITSDQLNKVIKSLKIYLNKFLKRLNSGNRINL 407

 Score = 134 (52.2 bits), Expect = 8.1e-18, Sum P(4) = 8.1e-18
 Identities = 41/136 (30%), Positives = 61/136 (44%)

Query:   581 ESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKR 640
             E  ++ R+D   +   G+ L++I   VP GVV FF SY YL+ V+  W D  I+ +++  
Sbjct:   608 EFSYQKRNDSKQLMALGEFLIEITKRVPYGVVIFFPSYKYLDQVLQFWRDTKILTSIESE 667

Query:   641 KLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVG 700
             K +F E +D  +   V  E    I   R  ++  S V  +   G N    D       VG
Sbjct:   668 KTIFREPKDPSNVEKVLNEYGYLIQTERKGAILFSVVGGKMSEGINFSD-DLARAVIMVG 726

Query:   701 REAPLAPGVYSITKLK 716
                P A     +TK K
Sbjct:   727 LPYPNAYSGEMVTKRK 742

 Score = 88 (36.0 bits), Expect = 3.3e-13, Sum P(4) = 3.3e-13
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query:   543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVI 593
             ++ R+D   +   G+ L++I   VP GVV FF SY YL+ V +   D  ++
Sbjct:   611 YQKRNDSKQLMALGEFLIEITKRVPYGVVIFFPSYKYLDQVLQFWRDTKIL 661

 Score = 72 (30.4 bits), Expect = 8.1e-18, Sum P(4) = 8.1e-18
 Identities = 12/44 (27%), Positives = 26/44 (59%)

Query:   855 DYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQL 898
             DY I+   D+RF+    ++KL +W++E ++   TN +   ++ +
Sbjct:   787 DYSIIYLVDRRFSTPRIQNKLSQWVKERISITTTNNNNNNSIYI 830

 Score = 70 (29.7 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
 Identities = 22/74 (29%), Positives = 40/74 (54%)

Query:   480 VAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLV-LSSRKNLC 538
             V+Y+N  P+   K+ + SRT  ++ +   +L RL ++     +    T  + L SRK LC
Sbjct:   193 VSYINECPI---KIFFSSRTHSQLNQFSSQL-RLTNFQASFEDLEERTKYIPLGSRKQLC 248

Query:   539 IHSEFETR-DDISV 551
             I+ +  ++ +D SV
Sbjct:   249 INEKVRSKGNDQSV 262

 Score = 59 (25.8 bits), Expect = 8.1e-18, Sum P(4) = 8.1e-18
 Identities = 19/65 (29%), Positives = 32/65 (49%)

Query:   357 LYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLP 416
             L +  LD S   K + D+ + V++  GT+ P+  Y   L F  V  +  + T A   ++P
Sbjct:   533 LNYMLLDPSAVFKEIVDQAKCVLLCGGTMEPMSDYMDYL-FPSVPTNKIN-TFACGHVIP 590

Query:   417 MVREN 421
               +EN
Sbjct:   591 --KEN 593

 Score = 55 (24.4 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query:   462 LLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVE 508
             L E P+GTGKT S++   + ++     + T L     T  E+E V E
Sbjct:    39 LFESPTGTGKTLSIICSSMTWLRTFKRNNTFL----ETNNEVEDVYE 81


>UNIPROTKB|A8WS58 [details] [associations]
            symbol:rtel-1 "Regulator of telomere elongation helicase 1
            homolog" species:6238 "Caenorhabditis briggsae" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
            "ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0010569 "regulation of double-strand break repair via
            homologous recombination" evidence=ISS] InterPro:IPR006554
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
            GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
            GO:GO:0051539 GO:GO:0004003 GO:GO:0010569 eggNOG:COG1199
            TIGRFAMs:TIGR00604 KO:K11136 EMBL:HE601486 RefSeq:XP_002639805.1
            EnsemblMetazoa:CBG02256 GeneID:8581799 KEGG:cbr:CBG02256
            CTD:8581799 WormBase:CBG02256 HOGENOM:HOG000154218 OMA:ENDIENQ
            Uniprot:A8WS58
        Length = 994

 Score = 186 (70.5 bits), Expect = 8.7e-18, Sum P(4) = 8.7e-18
 Identities = 37/125 (29%), Positives = 72/125 (57%)

Query:    35 CDFYEKFDAVGREAP---LAPG-VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 90
             C +Y KFDA+  +     L  G    I    ++G +  +CPYF++RQ    A++++  Y+
Sbjct:   169 CHYYNKFDALTTDKANEILEKGEAMDIEDFVKIGTQNSICPYFMSRQRSETAELILLPYN 228

Query:    91 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 150
             Y++DPK+      +L ++S+V+FDEAHN++++C  + S  ++  +I   +  ++ +   L
Sbjct:   229 YIIDPKMRRRYKLDL-KNSIVIFDEAHNLESICESNASAELSSTSIALCIEELKKVLALL 287

Query:   151 KEMKE 155
              E +E
Sbjct:   288 VEEEE 292

 Score = 186 (70.5 bits), Expect = 3.5e-17, Sum P(4) = 3.5e-17
 Identities = 37/125 (29%), Positives = 72/125 (57%)

Query:   690 CDFYEKFDAVGREAP---LAPG-VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYH 745
             C +Y KFDA+  +     L  G    I    ++G +  +CPYF++RQ    A++++  Y+
Sbjct:   169 CHYYNKFDALTTDKANEILEKGEAMDIEDFVKIGTQNSICPYFMSRQRSETAELILLPYN 228

Query:   746 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 805
             Y++DPK+      +L ++S+V+FDEAHN++++C  + S  ++  +I   +  ++ +   L
Sbjct:   229 YIIDPKMRRRYKLDL-KNSIVIFDEAHNLESICESNASAELSSTSIALCIEELKKVLALL 287

Query:   806 KEMKE 810
              E +E
Sbjct:   288 VEEEE 292

 Score = 83 (34.3 bits), Expect = 8.7e-18, Sum P(4) = 8.7e-18
 Identities = 30/117 (25%), Positives = 54/117 (46%)

Query:   584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYD--QGIIDN----- 636
             F+ R +I  + + G+ L+ +    P GV+ FF+SY  ++ +V  W    +G  D+     
Sbjct:   538 FQNRKNIEYVSDVGESLIRVMETTPQGVLVFFSSYSQMDELVEVWKKTKRGASDSPETFW 597

Query:   637 --LQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCD 691
               ++K K + +E + A +  +  + R  + V    H     +V  R K  E I  CD
Sbjct:   598 EKMEKTKKIAVEPR-AKEQLAAVRLRYTQGVS-EPHGAALLAVC-RGKVSEGIDFCD 651

 Score = 82 (33.9 bits), Expect = 3.5e-17, Sum P(4) = 3.5e-17
 Identities = 21/49 (42%), Positives = 28/49 (57%)

Query:   435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             FP+E  Y  Q  +M  +   LD K    LE P+GTGKT SLL   +A++
Sbjct:    21 FPFEP-YECQRIFMKNVIDVLDMKLDAALESPTGTGKTLSLLCSTLAWV 68

 Score = 81 (33.6 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
 Identities = 22/100 (22%), Positives = 46/100 (46%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEIN----MTGLVLSSRKNLCIHSEFET 545
             V  +L  S T+  I+     +   F   +++   +     +T +V   +    + S F+ 
Sbjct:   482 VRNVLLASGTLSPIQAFTYNMGLNFGAILENEHALKQVPVLTSIVTRGKHGGLVGS-FQN 540

Query:   546 RDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
             R +I  + + G+ L+ +    P GV+ FF+SY  ++ + E
Sbjct:   541 RKNIEYVSDVGESLIRVMETTPQGVLVFFSSYSQMDELVE 580

 Score = 67 (28.6 bits), Expect = 8.7e-18, Sum P(4) = 8.7e-18
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLT 884
             +L+ K D+G ++  D R+A S K    PKW++  ++
Sbjct:   714 VLRHKNDFGTVVLIDTRYA-SAKPEMFPKWLRNTIS 748

 Score = 64 (27.6 bits), Expect = 8.7e-18, Sum P(4) = 8.7e-18
 Identities = 21/75 (28%), Positives = 39/75 (52%)

Query:   356 VLYFCCLDSSLAIKPVFDR-FQTVVITSGTLSPLDM--YPKILNFQPVIMHSFSMTLARP 412
             + YFC   +S++++ +  R  + V++ SGTLSP+    Y   LNF  ++ +  ++    P
Sbjct:   463 IKYFC-FQASISMRMLKMRGVRNVLLASGTLSPIQAFTYNMGLNFGAILENEHALKQV-P 520

Query:   413 CLLPMVRENYAMGLM 427
              L  +V      GL+
Sbjct:   521 VLTSIVTRGKHGGLV 535

 Score = 59 (25.8 bits), Expect = 3.5e-17, Sum P(4) = 3.5e-17
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             +  + Y SRT  ++E+VV EL R    ++K          +L SR++ CI+ +
Sbjct:   102 IPTIFYASRTHSQLEQVVHELNRTEYKWVKTT--------ILGSREHFCINQK 146

 Score = 47 (21.6 bits), Expect = 4.5e-16, Sum P(4) = 4.5e-16
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query:   503 IEKVVEELARLFDYYIKHNEEINMT 527
             +E+ V+ L     Y +  NEE+++T
Sbjct:   378 VERFVDVLRDAISYLLSKNEEVSLT 402


>UNIPROTKB|J3QSE8 [details] [associations]
            symbol:BRIP1 "Fanconi anemia group J protein" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491
            INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
            GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 TIGRFAMs:TIGR00604
            EMBL:AC002994 EMBL:AC005969 EMBL:AC060798 HGNC:HGNC:20473
            ProteinModelPortal:J3QSE8 Ensembl:ENST00000577598 Uniprot:J3QSE8
        Length = 994

 Score = 153 (58.9 bits), Expect = 8.7e-18, Sum P(4) = 8.7e-18
 Identities = 61/230 (26%), Positives = 101/230 (43%)

Query:    29 GENIPVCDFYEKFDAVGREAPLAP--GV---YSITKLKEMGRELGLCPYFLARQAIIHAK 83
             G+N   C FY     +  +  L    G+   + I +L  +G++L  CPY+ AR+ I  A 
Sbjct:   304 GKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDAD 363

Query:    84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
             I+   Y+YLLD +I   +   L +  VV+ DEAHNI++   +S S  +    +  A   +
Sbjct:   364 IIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422

Query:   144 QTLEGTLKEMKEADSAKLREEYARLVEGLR-DAQSARETDVVLANPVLP-DEILQEVVPG 201
              ++      +++ D   LR     L+  L  +A+   E D   A  +   +E+L  +   
Sbjct:   423 DSMVNN--NIRKKDHEPLRAVCCSLINWLEANAEYLVERDYESACKIWSGNEMLLTLHKM 480

Query:   202 NIRTAE------HFVGFLKRFIE----YLKTRLRVQQVVQESPATFLKDI 241
              I TA       HF   L++  +    Y K   R   V+  S    LK +
Sbjct:   481 GITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKGL 530

 Score = 152 (58.6 bits), Expect = 7.8e-15, Sum P(3) = 7.8e-15
 Identities = 45/160 (28%), Positives = 76/160 (47%)

Query:   684 GENIPVCDFYEKFDAVGREAPLAP--GV---YSITKLKEMGRELGLCPYFLARQAIIHAK 738
             G+N   C FY     +  +  L    G+   + I +L  +G++L  CPY+ AR+ I  A 
Sbjct:   304 GKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDAD 363

Query:   739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
             I+   Y+YLLD +I   +   L +  VV+ DEAHNI++   +S S  +    +  A   +
Sbjct:   364 IIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422

Query:   799 QTLEGTLKEMKEADSAKLREEYARLVEGLR-DAQSARETD 837
              ++      +++ D   LR     L+  L  +A+   E D
Sbjct:   423 DSMVNN--NIRKKDHEPLRAVCCSLINWLEANAEYLVERD 460

 Score = 121 (47.7 bits), Expect = 7.8e-15, Sum P(3) = 7.8e-15
 Identities = 23/58 (39%), Positives = 38/58 (65%)

Query:   428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
             I  + ++FPY+  YP Q A M  + + L++K HCLLE P+G+GK+ +LL   +A+  +
Sbjct:    10 IGGVKIYFPYK-AYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQS 66

 Score = 94 (38.1 bits), Expect = 8.7e-18, Sum P(4) = 8.7e-18
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query:   584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
             FE +D++      G LL+ +   V  G++CF  SY  LE +   W   G+  NL+  K +
Sbjct:   670 FEFQDEV------GALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTV 723

Query:   644 FIETQ 648
              +E Q
Sbjct:   724 IVEPQ 728

 Score = 85 (35.0 bits), Expect = 8.7e-18, Sum P(4) = 8.7e-18
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query:   356 VLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMY 391
             VL F CL+ ++A   +  + QT+V+TSGTLSP+  +
Sbjct:   588 VLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSF 623

 Score = 79 (32.9 bits), Expect = 4.3e-12, Sum P(3) = 4.3e-12
 Identities = 33/127 (25%), Positives = 51/127 (40%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMT----GLVLSSRK--NLCIHSEF 543
             V  ++  S T+  ++    EL   F   ++ N  I  +    G + S  K  NLC  + F
Sbjct:   607 VQTIVLTSGTLSPMKSFSSELGVTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLC--ATF 664

Query:   544 ETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDI 603
             +  +        G LL+ +   V  G++CF  SY  LE + E      +  N    LV  
Sbjct:   665 QNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLE--LVKT 722

Query:   604 ACVVPDG 610
               V P G
Sbjct:   723 VIVEPQG 729

 Score = 70 (29.7 bits), Expect = 8.7e-18, Sum P(4) = 8.7e-18
 Identities = 29/109 (26%), Positives = 49/109 (44%)

Query:   797 NIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLA-NPVLPDEILQGKTD 855
             N++ L+  LK       +KLR        GL   +   E     A N  L    ++ + D
Sbjct:   788 NVKDLQVELKRQYNDHHSKLR--------GLLPGRQWYEIQAYRALNQAL-GRCIRHRND 838

Query:   856 YGIMIFADKRFARSDKR--SKLPKWIQEYLTDNLTNLSTEEAV-QLSKR 901
             +G +I  D RF  +  R  S L KW+++ +  + T  S  E++ + SK+
Sbjct:   839 WGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKK 887

 Score = 56 (24.8 bits), Expect = 7.8e-15, Sum P(3) = 7.8e-15
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             + K+ + +RT  +I ++  EL R   Y       + MT  +LSSR + C+H E
Sbjct:   243 IPKIYFGTRTHKQIAQITRELRRTA-Y-----SGVPMT--ILSSRDHTCVHPE 287


>UNIPROTKB|Q7QEI1 [details] [associations]
            symbol:AGAP000634 "Regulator of telomere elongation
            helicase 1 homolog" species:7165 "Anopheles gambiae" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
            "ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0010569 "regulation of double-strand break repair via
            homologous recombination" evidence=ISS] InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
            PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
            GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
            GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
            SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
            EMBL:AAAB01008847 HOGENOM:HOG000007558 KO:K11136 OrthoDB:EOG4S4MX7
            RefSeq:XP_311162.5 GeneID:1272449 KEGG:aga:AgaP_AGAP000634
            VectorBase:AGAP000634 CTD:1272449 PhylomeDB:Q7QEI1 Uniprot:Q7QEI1
        Length = 991

 Score = 168 (64.2 bits), Expect = 1.9e-16, Sum P(3) = 1.9e-16
 Identities = 55/209 (26%), Positives = 97/209 (46%)

Query:   690 CDFYEKFDAVGREAPLAP-GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
             C FY + +       +A   V  I  L  +GR+L  CPY+L+++ +  A ++   Y+YLL
Sbjct:   175 CSFYNRVETAKDRPDVATVPVMDIEDLVTVGRKLKACPYYLSKELVEQADVIFMPYNYLL 234

Query:   749 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEM 808
             DPK        L +++V++ DEAHN++ +C +  S  +    I  A   I+     +K M
Sbjct:   235 DPKARKSNGLSL-QNTVIILDEAHNVEKMCEEVGSALLRSSDIALA---IEDTSSVIKSM 290

Query:   809 KEADSAKLREEYARLVEGLRDAQSARETDVVLANPV--LPDEILQGKTDY-GIMIFADKR 865
              +   A   +   +L   L D    +E  + +   V  +P    QG T + G  IF D  
Sbjct:   291 MDGGGAWTGDGEKQLELTLDDLVLLKEILLGVEKAVDDIPILFSQGGTTHPGTYIF-DLL 349

Query:   866 FARSDKRSKLPKWIQEYLTDNLTNLSTEE 894
                + K   +   +Q  +   +T+++TE+
Sbjct:   350 EKANIKFGNINVVLQ-VMNSLITHITTEK 377

 Score = 163 (62.4 bits), Expect = 9.5e-18, Sum P(4) = 9.5e-18
 Identities = 37/126 (29%), Positives = 63/126 (50%)

Query:    35 CDFYEKFDAVGREAPLAP-GVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 93
             C FY + +       +A   V  I  L  +GR+L  CPY+L+++ +  A ++   Y+YLL
Sbjct:   175 CSFYNRVETAKDRPDVATVPVMDIEDLVTVGRKLKACPYYLSKELVEQADVIFMPYNYLL 234

Query:    94 DPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEM 153
             DPK        L +++V++ DEAHN++ +C +  S  +    I  A   I+     +K M
Sbjct:   235 DPKARKSNGLSL-QNTVIILDEAHNVEKMCEEVGSALLRSSDIALA---IEDTSSVIKSM 290

Query:   154 KEADSA 159
              +   A
Sbjct:   291 MDGGGA 296

 Score = 106 (42.4 bits), Expect = 1.9e-16, Sum P(3) = 1.9e-16
 Identities = 25/57 (43%), Positives = 37/57 (64%)

Query:   427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
             MI+ +PV FP+E  Y  Q  YM ++ + L  K + +LE P+GTGKT SLL   +A++
Sbjct:     5 MINGIPVNFPFEP-YELQKNYMAKVIECLQNKTNGVLESPTGTGKTLSLLCSSMAWL 60

 Score = 95 (38.5 bits), Expect = 9.5e-18, Sum P(4) = 9.5e-18
 Identities = 19/67 (28%), Positives = 33/67 (49%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L S F+ R +   I + G+  + +  ++P G++ FF SY  L      W   GI   + +
Sbjct:   527 LNSSFKNRSNPEYIASLGRTALSLCPIIPGGLLIFFPSYPLLNKCSEEWQASGIWGQISR 586

Query:   640 RKLLFIE 646
              K +F+E
Sbjct:   587 LKQIFVE 593

 Score = 78 (32.5 bits), Expect = 9.5e-18, Sum P(4) = 9.5e-18
 Identities = 26/98 (26%), Positives = 47/98 (47%)

Query:   812 DSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDK 871
             D+ + RE    L+ G  D  S   +  V  N  +   +++ K DYG ++  D RF  + +
Sbjct:   666 DTNRTREN--ELITG-NDWYSLEASRAV--NQAI-GRVIRHKDDYGAILLCDSRFQNARQ 719

Query:   872 RSKLPKWIQEYLTDN--LTNLSTEEAVQLSKRWLRQMA 907
             +++L  WI  +L ++  + N  T   V    R+ R M+
Sbjct:   720 QAQLSAWIHSHLRESSAVPNFGT--VVGEMSRFFRHMS 755

 Score = 70 (29.7 bits), Expect = 1.9e-16, Sum P(3) = 1.9e-16
 Identities = 15/60 (25%), Positives = 33/60 (55%)

Query:   492 KLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISV 551
             K++Y SRT  ++ + ++EL        K+   + +  ++L SR  LCIH +   +++ ++
Sbjct:   110 KIIYASRTHSQLSQAMQEL--------KNTSYLFVRSIILGSRDQLCIHPDISKQENNAI 161

 Score = 67 (28.6 bits), Expect = 6.2e-15, Sum P(4) = 6.2e-15
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query:   539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
             ++S F+ R +   I + G+  + +  ++P G++ FF SY  L    E
Sbjct:   527 LNSSFKNRSNPEYIASLGRTALSLCPIIPGGLLIFFPSYPLLNKCSE 573

 Score = 65 (27.9 bits), Expect = 9.5e-18, Sum P(4) = 9.5e-18
 Identities = 19/66 (28%), Positives = 35/66 (53%)

Query:   337 GFAIIVEPFSDKAPTVP-NPVLYFCCLDSSLAIKPVFDR-FQTVVITSGTLSPLDMYPKI 394
             G+    +P   KAP    + V+ F C +    ++ + D   +++++TSGTL+PL  +   
Sbjct:   436 GWTATKQPL--KAPVKSTSKVINFWCFNPGFGMRQLVDSGTRSIILTSGTLAPLKPFISE 493

Query:   395 LNFQPV 400
             L+  PV
Sbjct:   494 LSL-PV 498

 Score = 49 (22.3 bits), Expect = 5.6e-05, Sum P(3) = 5.6e-05
 Identities = 32/114 (28%), Positives = 51/114 (44%)

Query:   616 TSYLYLESVVASWYDQGIID-NLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTS 674
             TSYL++ S++    DQ  I  ++ K++   I+T   L   SV K R+    +        
Sbjct:   131 TSYLFVRSIILGSRDQLCIHPDISKQENNAIKT--VLCRESV-KARNCSFYN------RV 181

Query:   675 SSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITK-LKEMGRELGLCPY 727
              + +DR      +PV D  E    VGR+    P  Y ++K L E   ++   PY
Sbjct:   182 ETAKDRPDVA-TVPVMDI-EDLVTVGRKLKACP--YYLSKELVEQA-DVIFMPY 230


>UNIPROTKB|Q9BX63 [details] [associations]
            symbol:BRIP1 "Fanconi anemia group J protein" species:9606
            "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
            cluster binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA;NAS] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=NAS] [GO:0003677 "DNA binding" evidence=NAS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0000077 "DNA damage checkpoint"
            evidence=NAS] [GO:0006302 "double-strand break repair"
            evidence=NAS] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006357
            "regulation of transcription from RNA polymerase II promoter"
            evidence=IDA] [GO:0031965 "nuclear membrane" evidence=IDA]
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
            SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737
            GO:GO:0000077 GO:GO:0046872 GO:GO:0003677 GO:GO:0031965
            GO:GO:0006357 GO:GO:0051539 GO:GO:0004003 GO:GO:0006302 MIM:114480
            InterPro:IPR014001 SMART:SM00487 CleanEx:HS_BACH1 Orphanet:145
            PDB:1T29 PDBsum:1T29 MIM:227650 Orphanet:84 eggNOG:COG1199
            TIGRFAMs:TIGR00604 CTD:83990 HOGENOM:HOG000068083
            HOVERGEN:HBG081519 KO:K15362 OrthoDB:EOG4J6RQ8 EMBL:AF360549
            EMBL:AC002994 EMBL:AC005969 EMBL:AC060798 EMBL:BC101472
            EMBL:BC101474 EMBL:AK074713 IPI:IPI00012500 IPI:IPI00514398
            RefSeq:NP_114432.2 UniGene:Hs.128903 PDB:3AL3 PDBsum:3AL3
            ProteinModelPortal:Q9BX63 SMR:Q9BX63 DIP:DIP-41787N IntAct:Q9BX63
            MINT:MINT-275883 STRING:Q9BX63 PhosphoSite:Q9BX63 DMDM:57012613
            PaxDb:Q9BX63 PRIDE:Q9BX63 DNASU:83990 Ensembl:ENST00000259008
            GeneID:83990 KEGG:hsa:83990 UCSC:uc002izk.2 GeneCards:GC17M059759
            H-InvDB:HIX0202529 HGNC:HGNC:20473 HPA:HPA005474 MIM:605882
            MIM:609054 neXtProt:NX_Q9BX63 PharmGKB:PA134906421
            InParanoid:Q9BX63 EvolutionaryTrace:Q9BX63 GenomeRNAi:83990
            NextBio:73148 ArrayExpress:Q9BX63 Bgee:Q9BX63 CleanEx:HS_BRIP1
            Genevestigator:Q9BX63 GermOnline:ENSG00000136492 Uniprot:Q9BX63
        Length = 1249

 Score = 153 (58.9 bits), Expect = 2.5e-17, Sum P(4) = 2.5e-17
 Identities = 61/230 (26%), Positives = 101/230 (43%)

Query:    29 GENIPVCDFYEKFDAVGREAPLAP--GV---YSITKLKEMGRELGLCPYFLARQAIIHAK 83
             G+N   C FY     +  +  L    G+   + I +L  +G++L  CPY+ AR+ I  A 
Sbjct:   304 GKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDAD 363

Query:    84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
             I+   Y+YLLD +I   +   L +  VV+ DEAHNI++   +S S  +    +  A   +
Sbjct:   364 IIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422

Query:   144 QTLEGTLKEMKEADSAKLREEYARLVEGLR-DAQSARETDVVLANPVLP-DEILQEVVPG 201
              ++      +++ D   LR     L+  L  +A+   E D   A  +   +E+L  +   
Sbjct:   423 DSMVNN--NIRKKDHEPLRAVCCSLINWLEANAEYLVERDYESACKIWSGNEMLLTLHKM 480

Query:   202 NIRTAE------HFVGFLKRFIE----YLKTRLRVQQVVQESPATFLKDI 241
              I TA       HF   L++  +    Y K   R   V+  S    LK +
Sbjct:   481 GITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKGL 530

 Score = 152 (58.6 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
 Identities = 45/160 (28%), Positives = 76/160 (47%)

Query:   684 GENIPVCDFYEKFDAVGREAPLAP--GV---YSITKLKEMGRELGLCPYFLARQAIIHAK 738
             G+N   C FY     +  +  L    G+   + I +L  +G++L  CPY+ AR+ I  A 
Sbjct:   304 GKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDAD 363

Query:   739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
             I+   Y+YLLD +I   +   L +  VV+ DEAHNI++   +S S  +    +  A   +
Sbjct:   364 IIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 422

Query:   799 QTLEGTLKEMKEADSAKLREEYARLVEGLR-DAQSARETD 837
              ++      +++ D   LR     L+  L  +A+   E D
Sbjct:   423 DSMVNN--NIRKKDHEPLRAVCCSLINWLEANAEYLVERD 460

 Score = 121 (47.7 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
 Identities = 23/58 (39%), Positives = 38/58 (65%)

Query:   428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
             I  + ++FPY+  YP Q A M  + + L++K HCLLE P+G+GK+ +LL   +A+  +
Sbjct:    10 IGGVKIYFPYK-AYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQS 66

 Score = 94 (38.1 bits), Expect = 2.5e-17, Sum P(4) = 2.5e-17
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query:   584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
             FE +D++      G LL+ +   V  G++CF  SY  LE +   W   G+  NL+  K +
Sbjct:   670 FEFQDEV------GALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTV 723

Query:   644 FIETQ 648
              +E Q
Sbjct:   724 IVEPQ 728

 Score = 85 (35.0 bits), Expect = 2.5e-17, Sum P(4) = 2.5e-17
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query:   356 VLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMY 391
             VL F CL+ ++A   +  + QT+V+TSGTLSP+  +
Sbjct:   588 VLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSF 623

 Score = 79 (32.9 bits), Expect = 9.6e-12, Sum P(3) = 9.6e-12
 Identities = 33/127 (25%), Positives = 51/127 (40%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMT----GLVLSSRK--NLCIHSEF 543
             V  ++  S T+  ++    EL   F   ++ N  I  +    G + S  K  NLC  + F
Sbjct:   607 VQTIVLTSGTLSPMKSFSSELGVTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLC--ATF 664

Query:   544 ETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDI 603
             +  +        G LL+ +   V  G++CF  SY  LE + E      +  N    LV  
Sbjct:   665 QNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLE--LVKT 722

Query:   604 ACVVPDG 610
               V P G
Sbjct:   723 VIVEPQG 729

 Score = 70 (29.7 bits), Expect = 2.5e-17, Sum P(4) = 2.5e-17
 Identities = 29/109 (26%), Positives = 49/109 (44%)

Query:   797 NIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLA-NPVLPDEILQGKTD 855
             N++ L+  LK       +KLR        GL   +   E     A N  L    ++ + D
Sbjct:   788 NVKDLQVELKRQYNDHHSKLR--------GLLPGRQWYEIQAYRALNQAL-GRCIRHRND 838

Query:   856 YGIMIFADKRFARSDKR--SKLPKWIQEYLTDNLTNLSTEEAV-QLSKR 901
             +G +I  D RF  +  R  S L KW+++ +  + T  S  E++ + SK+
Sbjct:   839 WGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKK 887

 Score = 56 (24.8 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             + K+ + +RT  +I ++  EL R   Y       + MT  +LSSR + C+H E
Sbjct:   243 IPKIYFGTRTHKQIAQITRELRRTA-Y-----SGVPMT--ILSSRDHTCVHPE 287


>POMBASE|SPAC3G6.11 [details] [associations]
            symbol:chl1 "ATP-dependent DNA helicase Chl1 (predicted)"
            species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
            chromatin" evidence=IC] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006342
            "chromatin silencing" evidence=NAS] [GO:0007064 "mitotic sister
            chromatid cohesion" evidence=ISO] [GO:0032508 "DNA duplex
            unwinding" evidence=IEA] [GO:0045910 "negative regulation of DNA
            recombination" evidence=ISO] InterPro:IPR006554 InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
            SMART:SM00491 PomBase:SPAC3G6.11 INTERPRO:IPR013020 GO:GO:0005829
            GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677
            GO:GO:0000790 GO:GO:0004003 GO:GO:0006342 GO:GO:0007064
            GO:GO:0045910 eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5
            TIGRFAMs:TIGR00604 PIR:T38730 RefSeq:NP_594977.1
            ProteinModelPortal:O14147 STRING:O14147 EnsemblFungi:SPAC3G6.11.1
            GeneID:2543118 KEGG:spo:SPAC3G6.11 HOGENOM:HOG000241266 OMA:NLGRCVV
            OrthoDB:EOG408RH6 NextBio:20804145 Uniprot:O14147
        Length = 844

 Score = 139 (54.0 bits), Expect = 2.7e-17, Sum P(5) = 2.7e-17
 Identities = 32/106 (30%), Positives = 55/106 (51%)

Query:   581 ESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKR 640
             E   + +DD +++++ G+   +   ++PDGVV FF S+ +L+  V  W   GI + L  +
Sbjct:   616 EFTHKRKDDENLLKDLGRTFQNFISIIPDGVVVFFPSFAFLQQAVKVWEMNGITNRLNAK 675

Query:   641 KLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGEN 686
             K LFIE++D  D+   + E   + VD     +  S +  R   G N
Sbjct:   676 KPLFIESKDFGDNPLDTFEHYKQSVDAGLSGMLFSVIGGRLSEGIN 721

 Score = 128 (50.1 bits), Expect = 2.7e-17, Sum P(5) = 2.7e-17
 Identities = 29/79 (36%), Positives = 46/79 (58%)

Query:    46 REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL 105
             R+  LA  +  I +L E+G+ L +CPY+  R+A+  A+IV   Y  LL     N ++  L
Sbjct:   296 RDEALAE-IMDIEELVELGQRLKVCPYYGTREAVDSAQIVTLPYPLLLQESARNALNLTL 354

Query:   106 ARSSVVVFDEAHN-IDNVC 123
              + ++ + DEAHN ID +C
Sbjct:   355 -KDNICIIDEAHNLIDAIC 372

 Score = 128 (50.1 bits), Expect = 5.7e-11, Sum P(4) = 5.7e-11
 Identities = 29/79 (36%), Positives = 46/79 (58%)

Query:   701 REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL 760
             R+  LA  +  I +L E+G+ L +CPY+  R+A+  A+IV   Y  LL     N ++  L
Sbjct:   296 RDEALAE-IMDIEELVELGQRLKVCPYYGTREAVDSAQIVTLPYPLLLQESARNALNLTL 354

Query:   761 ARSSVVVFDEAHN-IDNVC 778
              + ++ + DEAHN ID +C
Sbjct:   355 -KDNICIIDEAHNLIDAIC 372

 Score = 83 (34.3 bits), Expect = 1.1e-11, Sum P(5) = 1.1e-11
 Identities = 19/76 (25%), Positives = 40/76 (52%)

Query:   508 EELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEF--ETRDDISVIRNYGQLLVDIACV 565
             +E +R+  +   H         +L S+    +  EF  + +DD +++++ G+   +   +
Sbjct:   582 DEQSRILPFSCDHIVPPENITTILVSQGPAGVPFEFTHKRKDDENLLKDLGRTFQNFISI 641

Query:   566 VPDGVVCFFTSYLYLE 581
             +PDGVV FF S+ +L+
Sbjct:   642 IPDGVVVFFPSFAFLQ 657

 Score = 78 (32.5 bits), Expect = 3.9e-12, Sum P(4) = 3.9e-12
 Identities = 20/59 (33%), Positives = 36/59 (61%)

Query:   484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             N  P  V K+ + SRT  +++++V+E+ +L +     +  I +  L  +SRKNLCI++E
Sbjct:   205 NEKPPIVQKIYFTSRTHSQLQQLVQEIKKLNNQTF--STPIRVVSL--ASRKNLCINNE 259

 Score = 66 (28.3 bits), Expect = 2.7e-17, Sum P(5) = 2.7e-17
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query:   345 FSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKIL 395
             F +K  T  NP L +  LD S  ++ + ++ ++V +  GT+SP+D +  +L
Sbjct:   530 FYEKQ-TGDNPYLKYLLLDPSKHVEILTEQCRSVNLAGGTMSPIDDFITLL 579

 Score = 65 (27.9 bits), Expect = 2.7e-17, Sum P(5) = 2.7e-17
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query:   850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQE 881
             ++ + DY  +I  D R+ RS  + KLP W+ +
Sbjct:   787 IRHRDDYASIILLDSRYNRSSIQRKLPNWLSK 818

 Score = 61 (26.5 bits), Expect = 3.9e-12, Sum P(4) = 3.9e-12
 Identities = 15/53 (28%), Positives = 27/53 (50%)

Query:   435 FPYEYI-YPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAH 486
             F + Y  Y  Q  +M  L  ++      + E P+GTGK+ SL+   + +++ H
Sbjct:    13 FHHPYTPYDIQLEFMRSLYSSISDGKIGIFESPTGTGKSLSLICASLTWLDEH 65

 Score = 37 (18.1 bits), Expect = 2.7e-17, Sum P(5) = 2.7e-17
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query:   314 NLTDFSSLVVITHLATLVSSYTK 336
             NL   S  + ++ LA  V  YTK
Sbjct:   452 NLHHLSEYLNVSKLARKVDGYTK 474


>UNIPROTKB|E1BTS7 [details] [associations]
            symbol:Gga.49055 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
            GeneTree:ENSGT00530000063199 EMBL:AADN02019151 EMBL:AADN02019152
            EMBL:AADN02019153 IPI:IPI00819960 Ensembl:ENSGALT00000039433
            ArrayExpress:E1BTS7 Uniprot:E1BTS7
        Length = 1085

 Score = 158 (60.7 bits), Expect = 6.3e-17, Sum P(4) = 6.3e-17
 Identities = 38/122 (31%), Positives = 60/122 (49%)

Query:    35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
             C FY   +    E  L   +  I  L + G +   CPY+L+R     A I+   Y+YLLD
Sbjct:   172 CHFYNNVEEKSTEKGLMDSIMDIEDLVKNGSKHRACPYYLSRSLKQQADIIFMPYNYLLD 231

Query:    95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ-TLEGTLKEM 153
              K     + EL + +VV+ DEAHN++ +C +S S  +    +  A+  I   LE   K +
Sbjct:   232 AKSRRAHNIEL-KGTVVILDEAHNVERLCEESSSFDLTAYDLASAIDVINLVLEEQAKVV 290

Query:   154 KE 155
             ++
Sbjct:   291 QQ 292

 Score = 158 (60.7 bits), Expect = 2.5e-16, Sum P(4) = 2.5e-16
 Identities = 38/122 (31%), Positives = 60/122 (49%)

Query:   690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
             C FY   +    E  L   +  I  L + G +   CPY+L+R     A I+   Y+YLLD
Sbjct:   172 CHFYNNVEEKSTEKGLMDSIMDIEDLVKNGSKHRACPYYLSRSLKQQADIIFMPYNYLLD 231

Query:   750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ-TLEGTLKEM 808
              K     + EL + +VV+ DEAHN++ +C +S S  +    +  A+  I   LE   K +
Sbjct:   232 AKSRRAHNIEL-KGTVVILDEAHNVERLCEESSSFDLTAYDLASAIDVINLVLEEQAKVV 290

Query:   809 KE 810
             ++
Sbjct:   291 QQ 292

 Score = 97 (39.2 bits), Expect = 6.3e-17, Sum P(4) = 6.3e-17
 Identities = 34/135 (25%), Positives = 58/135 (42%)

Query:   557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
             QL V I    PDG V        L S +E R     + + G+ + ++  VVP G++ FF 
Sbjct:   512 QLWVGIIPKGPDGTV--------LNSAYERRFSEDYLSSLGKTIGNLVRVVPHGLLVFFP 563

Query:   617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSS 676
             SY  ++  +  W +      +++ K +F+E ++      V      KI   + +     +
Sbjct:   564 SYPVMDKSLEYWREHDFAKRIEEVKPMFVEPRNKGSFAEVMDAYYSKIACPKSNGAAFLA 623

Query:   677 VRDRHKAGENIPVCD 691
             V  R KA E +   D
Sbjct:   624 VC-RGKASEGLDFAD 637

 Score = 83 (34.3 bits), Expect = 2.5e-16, Sum P(4) = 2.5e-16
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query:   433 VFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
             V FP++  Y  Q  YM ++ + L  K + +LE P+GTGKT  LL   +A+
Sbjct:    11 VDFPFQP-YECQETYMAKVLECLQTKVNGILESPTGTGKTLCLLCSTLAW 59

 Score = 82 (33.9 bits), Expect = 6.3e-17, Sum P(4) = 6.3e-17
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLT--DN 886
             +++ + DYG +   D RF   + R KLP W++ Y+   DN
Sbjct:   699 VIRHRQDYGAIFLCDDRFTTDNVRGKLPSWVRPYVNVYDN 738

 Score = 73 (30.8 bits), Expect = 4.3e-13, Sum P(3) = 4.3e-13
 Identities = 27/123 (21%), Positives = 52/123 (42%)

Query:   470 GKTTSLLSLIVAYMNAHPL---DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINM 526
             GKT S       Y + H L    V  ++  S T+  +     E+   F   +++   I+ 
Sbjct:   452 GKTLSYWCFSPGY-SMHELVRQGVRTIILTSGTLSPLSSFTMEMQIPFPVLLENPHVIDK 510

Query:   527 ----TGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 582
                  G++        ++S +E R     + + G+ + ++  VVP G++ FF SY  ++ 
Sbjct:   511 RQLWVGIIPKGPDGTVLNSAYERRFSEDYLSSLGKTIGNLVRVVPHGLLVFFPSYPVMDK 570

Query:   583 VFE 585
               E
Sbjct:   571 SLE 573

 Score = 66 (28.3 bits), Expect = 2.5e-16, Sum P(4) = 2.5e-16
 Identities = 18/59 (30%), Positives = 32/59 (54%)

Query:   489 DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
             D+ K++Y SRT  ++ +V+ EL         +  +I     VL SR+ LCI+ E + ++
Sbjct:   105 DIPKIIYASRTHSQLTQVINELKNTV-----YRPKI----CVLGSREQLCINPEVKRQE 154

 Score = 58 (25.5 bits), Expect = 6.3e-17, Sum P(4) = 6.3e-17
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query:   376 QTVVITSGTLSPLDMYPKILNFQ-PVIMHS 404
             +T+++TSGTLSPL  +   +    PV++ +
Sbjct:   475 RTIILTSGTLSPLSSFTMEMQIPFPVLLEN 504

 Score = 52 (23.4 bits), Expect = 6.4e-14, Sum P(4) = 6.4e-14
 Identities = 22/86 (25%), Positives = 34/86 (39%)

Query:   760 LARSSVVVFDEAHNIDNVCVD-SLSVRINRRTIEKAVGNIQTLEGTLKEMKEA--DSAKL 816
             L R  +VV        N+C +    +   RR   + +G +  LE   K  KEA  D+ +L
Sbjct:   802 LKRKRIVVPVNGDGASNLCTEYEQEMNSPRR---RCIGLLDALERNEKNSKEAEEDAQRL 858

Query:   817 REEYARLVEGLRDAQSARETDVVLAN 842
                  +  + L D Q      + L N
Sbjct:   859 STLSLQYEKRLTDEQKGGRKKIKLVN 884

 Score = 39 (18.8 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
 Identities = 10/47 (21%), Positives = 24/47 (51%)

Query:   621 LESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDG 667
             +ES+ ++  +  + D + K K + ++ + A+D+  +     G   DG
Sbjct:   301 MESISSAGLNMELED-IAKIKKILLQLESAIDAVELPPNDSGVTKDG 346


>UNIPROTKB|E1BTS6 [details] [associations]
            symbol:Gga.49055 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
            GeneTree:ENSGT00530000063199 EMBL:AADN02019151 EMBL:AADN02019152
            EMBL:AADN02019153 IPI:IPI00822587 Ensembl:ENSGALT00000039434
            ArrayExpress:E1BTS6 Uniprot:E1BTS6
        Length = 1124

 Score = 158 (60.7 bits), Expect = 7.4e-17, Sum P(4) = 7.4e-17
 Identities = 38/122 (31%), Positives = 60/122 (49%)

Query:    35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
             C FY   +    E  L   +  I  L + G +   CPY+L+R     A I+   Y+YLLD
Sbjct:   172 CHFYNNVEEKSTEKGLMDSIMDIEDLVKNGSKHRACPYYLSRSLKQQADIIFMPYNYLLD 231

Query:    95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ-TLEGTLKEM 153
              K     + EL + +VV+ DEAHN++ +C +S S  +    +  A+  I   LE   K +
Sbjct:   232 AKSRRAHNIEL-KGTVVILDEAHNVERLCEESSSFDLTAYDLASAIDVINLVLEEQAKVV 290

Query:   154 KE 155
             ++
Sbjct:   291 QQ 292

 Score = 158 (60.7 bits), Expect = 3.0e-16, Sum P(4) = 3.0e-16
 Identities = 38/122 (31%), Positives = 60/122 (49%)

Query:   690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
             C FY   +    E  L   +  I  L + G +   CPY+L+R     A I+   Y+YLLD
Sbjct:   172 CHFYNNVEEKSTEKGLMDSIMDIEDLVKNGSKHRACPYYLSRSLKQQADIIFMPYNYLLD 231

Query:   750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ-TLEGTLKEM 808
              K     + EL + +VV+ DEAHN++ +C +S S  +    +  A+  I   LE   K +
Sbjct:   232 AKSRRAHNIEL-KGTVVILDEAHNVERLCEESSSFDLTAYDLASAIDVINLVLEEQAKVV 290

Query:   809 KE 810
             ++
Sbjct:   291 QQ 292

 Score = 97 (39.2 bits), Expect = 7.4e-17, Sum P(4) = 7.4e-17
 Identities = 34/135 (25%), Positives = 58/135 (42%)

Query:   557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
             QL V I    PDG V        L S +E R     + + G+ + ++  VVP G++ FF 
Sbjct:   512 QLWVGIIPKGPDGTV--------LNSAYERRFSEDYLSSLGKTIGNLVRVVPHGLLVFFP 563

Query:   617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSS 676
             SY  ++  +  W +      +++ K +F+E ++      V      KI   + +     +
Sbjct:   564 SYPVMDKSLEYWREHDFAKRIEEVKPMFVEPRNKGSFAEVMDAYYSKIACPKSNGAAFLA 623

Query:   677 VRDRHKAGENIPVCD 691
             V  R KA E +   D
Sbjct:   624 VC-RGKASEGLDFAD 637

 Score = 83 (34.3 bits), Expect = 3.0e-16, Sum P(4) = 3.0e-16
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query:   433 VFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
             V FP++  Y  Q  YM ++ + L  K + +LE P+GTGKT  LL   +A+
Sbjct:    11 VDFPFQP-YECQETYMAKVLECLQTKVNGILESPTGTGKTLCLLCSTLAW 59

 Score = 82 (33.9 bits), Expect = 7.4e-17, Sum P(4) = 7.4e-17
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLT--DN 886
             +++ + DYG +   D RF   + R KLP W++ Y+   DN
Sbjct:   699 VIRHRQDYGAIFLCDDRFTTDNVRGKLPSWVRPYVNVYDN 738

 Score = 73 (30.8 bits), Expect = 4.9e-13, Sum P(3) = 4.9e-13
 Identities = 27/123 (21%), Positives = 52/123 (42%)

Query:   470 GKTTSLLSLIVAYMNAHPL---DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINM 526
             GKT S       Y + H L    V  ++  S T+  +     E+   F   +++   I+ 
Sbjct:   452 GKTLSYWCFSPGY-SMHELVRQGVRTIILTSGTLSPLSSFTMEMQIPFPVLLENPHVIDK 510

Query:   527 ----TGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 582
                  G++        ++S +E R     + + G+ + ++  VVP G++ FF SY  ++ 
Sbjct:   511 RQLWVGIIPKGPDGTVLNSAYERRFSEDYLSSLGKTIGNLVRVVPHGLLVFFPSYPVMDK 570

Query:   583 VFE 585
               E
Sbjct:   571 SLE 573

 Score = 66 (28.3 bits), Expect = 3.0e-16, Sum P(4) = 3.0e-16
 Identities = 18/59 (30%), Positives = 32/59 (54%)

Query:   489 DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
             D+ K++Y SRT  ++ +V+ EL         +  +I     VL SR+ LCI+ E + ++
Sbjct:   105 DIPKIIYASRTHSQLTQVINELKNTV-----YRPKI----CVLGSREQLCINPEVKRQE 154

 Score = 58 (25.5 bits), Expect = 7.4e-17, Sum P(4) = 7.4e-17
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query:   376 QTVVITSGTLSPLDMYPKILNFQ-PVIMHS 404
             +T+++TSGTLSPL  +   +    PV++ +
Sbjct:   475 RTIILTSGTLSPLSSFTMEMQIPFPVLLEN 504

 Score = 52 (23.4 bits), Expect = 7.6e-14, Sum P(4) = 7.6e-14
 Identities = 22/86 (25%), Positives = 34/86 (39%)

Query:   760 LARSSVVVFDEAHNIDNVCVD-SLSVRINRRTIEKAVGNIQTLEGTLKEMKEA--DSAKL 816
             L R  +VV        N+C +    +   RR   + +G +  LE   K  KEA  D+ +L
Sbjct:   802 LKRKRIVVPVNGDGASNLCTEYEQEMNSPRR---RCIGLLDALERNEKNSKEAEEDAQRL 858

Query:   817 REEYARLVEGLRDAQSARETDVVLAN 842
                  +  + L D Q      + L N
Sbjct:   859 STLSLQYEKRLTDEQKGGRKKIKLVN 884

 Score = 39 (18.8 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
 Identities = 10/47 (21%), Positives = 24/47 (51%)

Query:   621 LESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDG 667
             +ES+ ++  +  + D + K K + ++ + A+D+  +     G   DG
Sbjct:   301 MESISSAGLNMELED-IAKIKKILLQLESAIDAVELPPNDSGVTKDG 346


>UNIPROTKB|F1NE49 [details] [associations]
            symbol:Gga.49055 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0000723 "telomere maintenance"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 GO:GO:0000723
            TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199 OMA:VLKMQFL
            EMBL:AADN02019151 EMBL:AADN02019152 EMBL:AADN02019153
            IPI:IPI00597328 Ensembl:ENSGALT00000009881 ArrayExpress:F1NE49
            Uniprot:F1NE49
        Length = 1127

 Score = 158 (60.7 bits), Expect = 7.5e-17, Sum P(4) = 7.5e-17
 Identities = 38/122 (31%), Positives = 60/122 (49%)

Query:    35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
             C FY   +    E  L   +  I  L + G +   CPY+L+R     A I+   Y+YLLD
Sbjct:   174 CHFYNNVEEKSTEKGLMDSIMDIEDLVKNGSKHRACPYYLSRSLKQQADIIFMPYNYLLD 233

Query:    95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ-TLEGTLKEM 153
              K     + EL + +VV+ DEAHN++ +C +S S  +    +  A+  I   LE   K +
Sbjct:   234 AKSRRAHNIEL-KGTVVILDEAHNVERLCEESSSFDLTAYDLASAIDVINLVLEEQAKVV 292

Query:   154 KE 155
             ++
Sbjct:   293 QQ 294

 Score = 158 (60.7 bits), Expect = 3.0e-16, Sum P(4) = 3.0e-16
 Identities = 38/122 (31%), Positives = 60/122 (49%)

Query:   690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
             C FY   +    E  L   +  I  L + G +   CPY+L+R     A I+   Y+YLLD
Sbjct:   174 CHFYNNVEEKSTEKGLMDSIMDIEDLVKNGSKHRACPYYLSRSLKQQADIIFMPYNYLLD 233

Query:   750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ-TLEGTLKEM 808
              K     + EL + +VV+ DEAHN++ +C +S S  +    +  A+  I   LE   K +
Sbjct:   234 AKSRRAHNIEL-KGTVVILDEAHNVERLCEESSSFDLTAYDLASAIDVINLVLEEQAKVV 292

Query:   809 KE 810
             ++
Sbjct:   293 QQ 294

 Score = 97 (39.2 bits), Expect = 7.5e-17, Sum P(4) = 7.5e-17
 Identities = 34/135 (25%), Positives = 58/135 (42%)

Query:   557 QLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFT 616
             QL V I    PDG V        L S +E R     + + G+ + ++  VVP G++ FF 
Sbjct:   514 QLWVGIIPKGPDGTV--------LNSAYERRFSEDYLSSLGKTIGNLVRVVPHGLLVFFP 565

Query:   617 SYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSS 676
             SY  ++  +  W +      +++ K +F+E ++      V      KI   + +     +
Sbjct:   566 SYPVMDKSLEYWREHDFAKRIEEVKPMFVEPRNKGSFAEVMDAYYSKIACPKSNGAAFLA 625

Query:   677 VRDRHKAGENIPVCD 691
             V  R KA E +   D
Sbjct:   626 VC-RGKASEGLDFAD 639

 Score = 83 (34.3 bits), Expect = 3.0e-16, Sum P(4) = 3.0e-16
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query:   433 VFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
             V FP++  Y  Q  YM ++ + L  K + +LE P+GTGKT  LL   +A+
Sbjct:    13 VDFPFQP-YECQETYMAKVLECLQTKVNGILESPTGTGKTLCLLCSTLAW 61

 Score = 82 (33.9 bits), Expect = 7.5e-17, Sum P(4) = 7.5e-17
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLT--DN 886
             +++ + DYG +   D RF   + R KLP W++ Y+   DN
Sbjct:   701 VIRHRQDYGAIFLCDDRFTTDNVRGKLPSWVRPYVNVYDN 740

 Score = 73 (30.8 bits), Expect = 4.9e-13, Sum P(3) = 4.9e-13
 Identities = 27/123 (21%), Positives = 52/123 (42%)

Query:   470 GKTTSLLSLIVAYMNAHPL---DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINM 526
             GKT S       Y + H L    V  ++  S T+  +     E+   F   +++   I+ 
Sbjct:   454 GKTLSYWCFSPGY-SMHELVRQGVRTIILTSGTLSPLSSFTMEMQIPFPVLLENPHVIDK 512

Query:   527 ----TGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 582
                  G++        ++S +E R     + + G+ + ++  VVP G++ FF SY  ++ 
Sbjct:   513 RQLWVGIIPKGPDGTVLNSAYERRFSEDYLSSLGKTIGNLVRVVPHGLLVFFPSYPVMDK 572

Query:   583 VFE 585
               E
Sbjct:   573 SLE 575

 Score = 66 (28.3 bits), Expect = 3.0e-16, Sum P(4) = 3.0e-16
 Identities = 18/59 (30%), Positives = 32/59 (54%)

Query:   489 DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
             D+ K++Y SRT  ++ +V+ EL         +  +I     VL SR+ LCI+ E + ++
Sbjct:   107 DIPKIIYASRTHSQLTQVINELKNTV-----YRPKI----CVLGSREQLCINPEVKRQE 156

 Score = 58 (25.5 bits), Expect = 7.5e-17, Sum P(4) = 7.5e-17
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query:   376 QTVVITSGTLSPLDMYPKILNFQ-PVIMHS 404
             +T+++TSGTLSPL  +   +    PV++ +
Sbjct:   477 RTIILTSGTLSPLSSFTMEMQIPFPVLLEN 506

 Score = 52 (23.4 bits), Expect = 7.7e-14, Sum P(4) = 7.7e-14
 Identities = 22/86 (25%), Positives = 34/86 (39%)

Query:   760 LARSSVVVFDEAHNIDNVCVD-SLSVRINRRTIEKAVGNIQTLEGTLKEMKEA--DSAKL 816
             L R  +VV        N+C +    +   RR   + +G +  LE   K  KEA  D+ +L
Sbjct:   804 LKRKRIVVPVNGDGASNLCTEYEQEMNSPRR---RCIGLLDALERNEKNSKEAEEDAQRL 860

Query:   817 REEYARLVEGLRDAQSARETDVVLAN 842
                  +  + L D Q      + L N
Sbjct:   861 STLSLQYEKRLTDEQKGGRKKIKLVN 886

 Score = 39 (18.8 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
 Identities = 10/47 (21%), Positives = 24/47 (51%)

Query:   621 LESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDG 667
             +ES+ ++  +  + D + K K + ++ + A+D+  +     G   DG
Sbjct:   303 MESISSAGLNMELED-IAKIKKILLQLESAIDAVELPPNDSGVTKDG 348


>UNIPROTKB|E1C1X9 [details] [associations]
            symbol:BRIP1 "Fanconi anemia group J protein homolog"
            species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
            PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
            GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004003
            TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199 EMBL:AADN02025783
            IPI:IPI00820128 Ensembl:ENSGALT00000008466 ArrayExpress:E1C1X9
            Uniprot:E1C1X9
        Length = 1249

 Score = 168 (64.2 bits), Expect = 8.5e-17, Sum P(4) = 8.5e-17
 Identities = 51/179 (28%), Positives = 85/179 (47%)

Query:    11 DGRC-HSLTSSSVRDRHKA------GENIPVCDFYEKFDAVGREAPL--APGVYS---IT 58
             D  C H + SSS  +R++       G++   C +Y     +     L  A   Y    I 
Sbjct:   289 DYTCIHPVVSSSNSNRNELCVELLEGKHGKSCLYYHGVHKLSEHYALQSAHNTYQAWDIE 348

Query:    59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
              L  +G++L  CPYF AR+ ++ A IV   Y+YLLDP+I   +   L +  VV+ DEAHN
Sbjct:   349 DLVSLGKKLRACPYFAARELMVGADIVFCPYNYLLDPQIRESMEINL-KGQVVILDEAHN 407

Query:   119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS 177
             I++   +++S  +    +  A   +  +      +++ D  +LR     L   LR++ S
Sbjct:   408 IEDSAREAVSYSVTESQLNAAREELDFMVNN--NIRQKDHEQLRAMCCSLTNWLRESSS 464

 Score = 168 (64.2 bits), Expect = 9.9e-14, Sum P(3) = 9.9e-14
 Identities = 51/179 (28%), Positives = 85/179 (47%)

Query:   666 DGRC-HSLTSSSVRDRHKA------GENIPVCDFYEKFDAVGREAPL--APGVYS---IT 713
             D  C H + SSS  +R++       G++   C +Y     +     L  A   Y    I 
Sbjct:   289 DYTCIHPVVSSSNSNRNELCVELLEGKHGKSCLYYHGVHKLSEHYALQSAHNTYQAWDIE 348

Query:   714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
              L  +G++L  CPYF AR+ ++ A IV   Y+YLLDP+I   +   L +  VV+ DEAHN
Sbjct:   349 DLVSLGKKLRACPYFAARELMVGADIVFCPYNYLLDPQIRESMEINL-KGQVVILDEAHN 407

Query:   774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS 832
             I++   +++S  +    +  A   +  +      +++ D  +LR     L   LR++ S
Sbjct:   408 IEDSAREAVSYSVTESQLNAAREELDFMVNN--NIRQKDHEQLRAMCCSLTNWLRESSS 464

 Score = 102 (41.0 bits), Expect = 9.9e-14, Sum P(3) = 9.9e-14
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query:   428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
             I  + + FP +  YP Q A M  + K L+ + HCLLE P+G+GK+ +LL   +++  +
Sbjct:    10 IGGVKIMFPCK-AYPSQLAMMNAIVKGLNNRQHCLLESPTGSGKSLALLCSALSWQQS 66

 Score = 93 (37.8 bits), Expect = 8.5e-17, Sum P(4) = 8.5e-17
 Identities = 31/104 (29%), Positives = 50/104 (48%)

Query:   551 VIRNYGQLLVDIACVVPDG-VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPD 609
             VIRN  Q+ V      P+G  +C   ++ + E+ FE +D++      G LL+ +   V  
Sbjct:   650 VIRN-SQVWVGTIGTGPNGRKLC--ATFQHTET-FEFQDEV------GALLLSVCQKVGQ 699

Query:   610 GVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
             G++CF  SY  L+ +   W   G+  NL+  K +  E Q    S
Sbjct:   700 GILCFLPSYKLLDKLKDRWIHTGLWRNLELVKTVIAEPQGGAKS 743

 Score = 80 (33.2 bits), Expect = 8.5e-17, Sum P(4) = 8.5e-17
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query:   356 VLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMY 391
             +L F CL+ ++A   + D  +TVV+TSGTLSP+D +
Sbjct:   599 MLNFWCLNPAVAFSDLND-VRTVVLTSGTLSPMDSF 633

 Score = 55 (24.4 bits), Expect = 8.5e-17, Sum P(4) = 8.5e-17
 Identities = 18/80 (22%), Positives = 37/80 (46%)

Query:   805 LKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLA-NPVLPDEILQGKTDYGIMIFAD 863
             +K+++     K  +++ +   GL       E     A N  L    ++ ++D+G +I  D
Sbjct:   799 VKDLQVELKRKYNDQH-KTTRGLLPGSQWYEIQAYRALNQAL-GRCIRHRSDWGALILVD 856

Query:   864 KRFARSDKR--SKLPKWIQE 881
              RF  +  +  + L KWI++
Sbjct:   857 DRFRNNPNKYITGLSKWIRQ 876

 Score = 51 (23.0 bits), Expect = 9.9e-14, Sum P(3) = 9.9e-14
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIH 540
             + K+ + +RT  +I ++  EL R   Y       + MT  +LSSR   CIH
Sbjct:   252 IPKIFFGTRTHKQIAQITRELKRTA-Y-----SGVPMT--ILSSRDYTCIH 294


>UNIPROTKB|Q3YK19 [details] [associations]
            symbol:BRIP1 "Fanconi anemia group J protein homolog"
            species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
            cluster binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006357 "regulation of transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0031965 "nuclear
            membrane" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0006281 "DNA repair" evidence=TAS] InterPro:IPR006554
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
            GO:GO:0005737 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
            GO:GO:0006281 GO:GO:0006357 GO:GO:0051539 GO:GO:0004003
            Reactome:REACT_115612 eggNOG:COG1199 TIGRFAMs:TIGR00604
            GeneTree:ENSGT00530000063199 EMBL:DQ109581 IPI:IPI00593256
            RefSeq:NP_001028230.1 UniGene:Gga.17801 ProteinModelPortal:Q3YK19
            STRING:Q3YK19 Ensembl:ENSGALT00000039225 GeneID:417642
            KEGG:gga:417642 CTD:83990 HOGENOM:HOG000068083 HOVERGEN:HBG081519
            InParanoid:Q3YK19 KO:K15362 OMA:GYETSCK OrthoDB:EOG4J6RQ8
            NextBio:20820915 ArrayExpress:Q3YK19 Uniprot:Q3YK19
        Length = 1252

 Score = 168 (64.2 bits), Expect = 8.6e-17, Sum P(4) = 8.6e-17
 Identities = 51/179 (28%), Positives = 85/179 (47%)

Query:    11 DGRC-HSLTSSSVRDRHKA------GENIPVCDFYEKFDAVGREAPL--APGVYS---IT 58
             D  C H + SSS  +R++       G++   C +Y     +     L  A   Y    I 
Sbjct:   289 DYTCIHPVVSSSNSNRNELCVELLEGKHGKSCLYYHGVHKLSEHYALQSAHNTYQAWDIE 348

Query:    59 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 118
              L  +G++L  CPYF AR+ ++ A IV   Y+YLLDP+I   +   L +  VV+ DEAHN
Sbjct:   349 DLVSLGKKLRACPYFAARELMVGADIVFCPYNYLLDPQIRESMEINL-KGQVVILDEAHN 407

Query:   119 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS 177
             I++   +++S  +    +  A   +  +      +++ D  +LR     L   LR++ S
Sbjct:   408 IEDSAREAVSYSVTESQLNAAREELDFMVNN--NIRQKDHEQLRAMCCSLTNWLRESSS 464

 Score = 168 (64.2 bits), Expect = 1.0e-13, Sum P(3) = 1.0e-13
 Identities = 51/179 (28%), Positives = 85/179 (47%)

Query:   666 DGRC-HSLTSSSVRDRHKA------GENIPVCDFYEKFDAVGREAPL--APGVYS---IT 713
             D  C H + SSS  +R++       G++   C +Y     +     L  A   Y    I 
Sbjct:   289 DYTCIHPVVSSSNSNRNELCVELLEGKHGKSCLYYHGVHKLSEHYALQSAHNTYQAWDIE 348

Query:   714 KLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN 773
              L  +G++L  CPYF AR+ ++ A IV   Y+YLLDP+I   +   L +  VV+ DEAHN
Sbjct:   349 DLVSLGKKLRACPYFAARELMVGADIVFCPYNYLLDPQIRESMEINL-KGQVVILDEAHN 407

Query:   774 IDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS 832
             I++   +++S  +    +  A   +  +      +++ D  +LR     L   LR++ S
Sbjct:   408 IEDSAREAVSYSVTESQLNAAREELDFMVNN--NIRQKDHEQLRAMCCSLTNWLRESSS 464

 Score = 102 (41.0 bits), Expect = 1.0e-13, Sum P(3) = 1.0e-13
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query:   428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
             I  + + FP +  YP Q A M  + K L+ + HCLLE P+G+GK+ +LL   +++  +
Sbjct:    10 IGGVKIMFPCK-AYPSQLAMMNAIVKGLNNRQHCLLESPTGSGKSLALLCSALSWQQS 66

 Score = 93 (37.8 bits), Expect = 8.6e-17, Sum P(4) = 8.6e-17
 Identities = 31/104 (29%), Positives = 50/104 (48%)

Query:   551 VIRNYGQLLVDIACVVPDG-VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPD 609
             VIRN  Q+ V      P+G  +C   ++ + E+ FE +D++      G LL+ +   V  
Sbjct:   650 VIRN-SQVWVGTIGTGPNGRKLC--ATFQHTET-FEFQDEV------GALLLSVCQKVGQ 699

Query:   610 GVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDS 653
             G++CF  SY  L+ +   W   G+  NL+  K +  E Q    S
Sbjct:   700 GILCFLPSYKLLDKLKDRWIHTGLWRNLELVKTVIAEPQGGAKS 743

 Score = 80 (33.2 bits), Expect = 8.6e-17, Sum P(4) = 8.6e-17
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query:   356 VLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMY 391
             +L F CL+ ++A   + D  +TVV+TSGTLSP+D +
Sbjct:   599 MLNFWCLNPAVAFSDLND-VRTVVLTSGTLSPMDSF 633

 Score = 55 (24.4 bits), Expect = 8.6e-17, Sum P(4) = 8.6e-17
 Identities = 18/80 (22%), Positives = 37/80 (46%)

Query:   805 LKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLA-NPVLPDEILQGKTDYGIMIFAD 863
             +K+++     K  +++ +   GL       E     A N  L    ++ ++D+G +I  D
Sbjct:   799 VKDLQVELKRKYNDQH-KTTRGLLPGSQWYEIQAYRALNQAL-GRCIRHRSDWGALILVD 856

Query:   864 KRFARSDKR--SKLPKWIQE 881
              RF  +  +  + L KWI++
Sbjct:   857 DRFRNNPNKYITGLSKWIRQ 876

 Score = 51 (23.0 bits), Expect = 1.0e-13, Sum P(3) = 1.0e-13
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIH 540
             + K+ + +RT  +I ++  EL R   Y       + MT  +LSSR   CIH
Sbjct:   252 IPKIFFGTRTHKQIAQITRELKRTA-Y-----SGVPMT--ILSSRDYTCIH 294


>UNIPROTKB|F1MWN6 [details] [associations]
            symbol:RTEL1 "Regulator of telomere elongation helicase 1"
            species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
            DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
            SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
            GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
            GeneTree:ENSGT00530000063199 IPI:IPI00905335 EMBL:DAAA02036222
            Ensembl:ENSBTAT00000052120 OMA:THEKEDE Uniprot:F1MWN6
        Length = 564

 Score = 175 (66.7 bits), Expect = 2.1e-16, Sum P(3) = 2.1e-16
 Identities = 43/133 (32%), Positives = 66/133 (49%)

Query:    35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
             C FY   +    E  LA  +  I  L   G +  LCPY+L+R     A I+   Y+YLLD
Sbjct:    40 CHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLD 99

Query:    95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
              K       +L + +VV+FDEAHN++ +C ++ S  +    +   +  I Q LE   +  
Sbjct:   100 AKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDLTPHDVASGLDVIDQVLE---ERT 155

Query:   154 KEADSAKLREEYA 166
             K A  A+L  E++
Sbjct:   156 KVAQQAELHPEFS 168

 Score = 175 (66.7 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 43/133 (32%), Positives = 66/133 (49%)

Query:   690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
             C FY   +    E  LA  +  I  L   G +  LCPY+L+R     A I+   Y+YLLD
Sbjct:    40 CHFYNNVEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLD 99

Query:   750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
              K       +L + +VV+FDEAHN++ +C ++ S  +    +   +  I Q LE   +  
Sbjct:   100 AKSRRAHGIDL-KGTVVIFDEAHNVEKMCEEAASFDLTPHDVASGLDVIDQVLE---ERT 155

Query:   809 KEADSAKLREEYA 821
             K A  A+L  E++
Sbjct:   156 KVAQQAELHPEFS 168

 Score = 102 (41.0 bits), Expect = 2.1e-16, Sum P(3) = 2.1e-16
 Identities = 23/67 (34%), Positives = 37/67 (55%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L S F+ R     + + G++L +I+ VVP G++ FF SY  +E  +  W  +     L+ 
Sbjct:   392 LSSAFDRRFSDECLSSLGKVLSNISRVVPHGLLVFFPSYPVMEKSLEFWRARDFTRKLEV 451

Query:   640 RKLLFIE 646
             RK LF+E
Sbjct:   452 RKPLFVE 458

 Score = 75 (31.5 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
 Identities = 25/100 (25%), Positives = 45/100 (45%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINM----TGLVLSSRKNLCIHSEFET 545
             V  L+  S T+  +     E+   F   +++   IN      G++        + S F+ 
Sbjct:   339 VRTLILTSGTLAPMASFSLEMQIPFPVCLENPHVINQHQIWVGVIPKGPDGAQLSSAFDR 398

Query:   546 RDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
             R     + + G++L +I+ VVP G++ FF SY  +E   E
Sbjct:   399 RFSDECLSSLGKVLSNISRVVPHGLLVFFPSYPVMEKSLE 438

 Score = 56 (24.8 bits), Expect = 2.1e-16, Sum P(3) = 2.1e-16
 Identities = 11/37 (29%), Positives = 23/37 (62%)

Query:   353 PNPVLYFCCLDSSLAIKPVFDR-FQTVVITSGTLSPL 388
             P  VL + C     +++ +  +  +T+++TSGTL+P+
Sbjct:   316 PGKVLSYWCFSPGHSMRELVRQGVRTLILTSGTLAPM 352

 Score = 49 (22.3 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query:   530 VLSSRKNLCIHSEFETRD 547
             VL SR+ LCIH E + ++
Sbjct:     5 VLGSREQLCIHPEVKKQE 22


>UNIPROTKB|E1BNG9 [details] [associations]
            symbol:BRIP1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
            GeneTree:ENSGT00530000063199 EMBL:DAAA02048371 IPI:IPI00923893
            Ensembl:ENSBTAT00000048969 Uniprot:E1BNG9
        Length = 1098

 Score = 149 (57.5 bits), Expect = 3.8e-16, Sum P(4) = 3.8e-16
 Identities = 44/154 (28%), Positives = 75/154 (48%)

Query:    29 GENIPVCDFYEKFDAVGREAPLAP--GVYS---ITKLKEMGRELGLCPYFLARQAIIHAK 83
             G+N   C FY     +  +  L    G++    I +L  +GR+L  CPY+ AR+ + +A 
Sbjct:   240 GKNGKSCYFYHGVHKMSDQHTLQTFQGMHKAWDIEELVSLGRKLKACPYYTARELMQNAD 299

Query:    84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
             I+   Y+YLLD +I   +   L +  VV+ DEAHNI++   +S S  +    +  A   +
Sbjct:   300 IIFCPYNYLLDAQIRETMDINL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 358

Query:   144 QTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS 177
              ++      +++ D   LR     L+  L +A S
Sbjct:   359 DSMINY--NIRKKDHEPLRAVCCSLINWL-EASS 389

 Score = 149 (57.5 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
 Identities = 44/154 (28%), Positives = 75/154 (48%)

Query:   684 GENIPVCDFYEKFDAVGREAPLAP--GVYS---ITKLKEMGRELGLCPYFLARQAIIHAK 738
             G+N   C FY     +  +  L    G++    I +L  +GR+L  CPY+ AR+ + +A 
Sbjct:   240 GKNGKSCYFYHGVHKMSDQHTLQTFQGMHKAWDIEELVSLGRKLKACPYYTARELMQNAD 299

Query:   739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
             I+   Y+YLLD +I   +   L +  VV+ DEAHNI++   +S S  +    +  A   +
Sbjct:   300 IIFCPYNYLLDAQIRETMDINL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 358

Query:   799 QTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS 832
              ++      +++ D   LR     L+  L +A S
Sbjct:   359 DSMINY--NIRKKDHEPLRAVCCSLINWL-EASS 389

 Score = 93 (37.8 bits), Expect = 3.8e-16, Sum P(4) = 3.8e-16
 Identities = 29/99 (29%), Positives = 48/99 (48%)

Query:   551 VIRNYGQLLVDIACVVPDG-VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPD 609
             VI N  Q+ V      P G  +C   ++ + E+ FE +D++      G LL+ +   +  
Sbjct:   575 VINN-SQVWVGTIGSGPKGRSLC--ATFQHTET-FEFQDEV------GALLLSVCQTISQ 624

Query:   610 GVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
             G++CF  SY  LE +   W   G+  NL+  K + +E Q
Sbjct:   625 GILCFLPSYKLLEKLKERWLSTGLWYNLELVKTVIVEPQ 663

 Score = 84 (34.6 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
 Identities = 37/131 (28%), Positives = 58/131 (44%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMT----GLVLSSRK--NLCI---H 540
             V  ++  S T+  ++    EL   F   ++ N  IN +    G + S  K  +LC    H
Sbjct:   542 VWAIVLTSGTLSPMKSFSSELGVTFTIQLEANHVINNSQVWVGTIGSGPKGRSLCATFQH 601

Query:   541 SE-FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQL 599
             +E FE +D++      G LL+ +   +  G++CF  SY  LE + E    +S    Y   
Sbjct:   602 TETFEFQDEV------GALLLSVCQTISQGILCFLPSYKLLEKLKERW--LSTGLWYNLE 653

Query:   600 LVDIACVVPDG 610
             LV    V P G
Sbjct:   654 LVKTVIVEPQG 664

 Score = 73 (30.8 bits), Expect = 3.8e-16, Sum P(4) = 3.8e-16
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query:   356 VLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMY 391
             VL F CL+ ++A   +  +   +V+TSGTLSP+  +
Sbjct:   523 VLNFWCLNPAVAFSDINGKVWAIVLTSGTLSPMKSF 558

 Score = 73 (30.8 bits), Expect = 3.8e-16, Sum P(4) = 3.8e-16
 Identities = 27/114 (23%), Positives = 57/114 (50%)

Query:   805 LKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLA-NPVLPDEILQGKTDYGIMIFAD 863
             +K+++     +  +++++L  GL   +   E     A N  L    ++ K D+G +I  D
Sbjct:   724 VKDLQVELKRQYNDQHSKL-RGLLPGRQWYEIQAYRALNQAL-GRCIRHKNDWGALILVD 781

Query:   864 KRFARSDKR--SKLPKWIQEYLTDNLTNLSTEEAV-QLSKRWLRQMAQPFTRED 914
              RF  +  R  S L KW+++ +  + T  S  E++ + +K+  + +A   ++ED
Sbjct:   782 DRFRSNPSRYISGLSKWVRQLIQHHSTFESALESLAEFAKKHQKVIAA--SKED 833

 Score = 56 (24.8 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             + K+ + +RT  +I ++  EL R   Y       + MT  +LSSR + C+H E
Sbjct:   179 IPKIYFGTRTHKQIAQITRELQRTA-Y-----SGVPMT--ILSSRDHTCVHPE 223


>ZFIN|ZDB-GENE-041114-191 [details] [associations]
            symbol:ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) box
            helicase 11" species:7955 "Danio rerio" [GO:0016818 "hydrolase
            activity, acting on acid anhydrides, in phosphorus-containing
            anhydrides" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0032508 "DNA duplex
            unwinding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
            metabolic process" evidence=IEA] [GO:0016817 "hydrolase activity,
            acting on acid anhydrides" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR014013 InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307
            PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
            ZFIN:ZDB-GENE-041114-191 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
            GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 eggNOG:COG1199
            KO:K11273 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
            HOGENOM:HOG000241266 HOVERGEN:HBG058884 OrthoDB:EOG4B5P4M CTD:1663
            EMBL:BC085645 IPI:IPI00501779 RefSeq:NP_001007320.1
            UniGene:Dr.37620 ProteinModelPortal:Q5U399 STRING:Q5U399
            GeneID:492353 KEGG:dre:492353 InParanoid:Q5U399 NextBio:20864919
            ArrayExpress:Q5U399 Uniprot:Q5U399
        Length = 890

 Score = 159 (61.0 bits), Expect = 4.8e-16, Sum P(4) = 4.8e-16
 Identities = 36/103 (34%), Positives = 55/103 (53%)

Query:   570 VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWY 629
             V+C   S   LE  F+TRD   ++   G++L ++  +VP GVVCFF SY Y + ++  W 
Sbjct:   645 VLCAGPSGQQLEFTFQTRDSPQMMEETGRVLSNLCNIVPGGVVCFFPSYEYEKRILGHWE 704

Query:   630 DQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSL 672
               GI+  LQ +K +F E + A     V  E   K +  RC ++
Sbjct:   705 STGILQRLQSKKKIFQEPKKASQVEQVLSEYS-KCIQ-RCSNI 745

 Score = 104 (41.7 bits), Expect = 1.2e-15, Sum P(4) = 1.2e-15
 Identities = 23/66 (34%), Positives = 35/66 (53%)

Query:    54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
             V  + +L + GRE   CPY+  R +I  A++VV  Y  LL          +L +  +V+ 
Sbjct:   313 VRDVEQLIQHGRETHTCPYYSTRMSIPAAQVVVLPYQSLLHASTRKASGIKL-KDQIVII 371

Query:   114 DEAHNI 119
             DEAHN+
Sbjct:   372 DEAHNL 377

 Score = 104 (41.7 bits), Expect = 3.2e-10, Sum P(4) = 3.2e-10
 Identities = 23/66 (34%), Positives = 35/66 (53%)

Query:   709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
             V  + +L + GRE   CPY+  R +I  A++VV  Y  LL          +L +  +V+ 
Sbjct:   313 VRDVEQLIQHGRETHTCPYYSTRMSIPAAQVVVLPYQSLLHASTRKASGIKL-KDQIVII 371

Query:   769 DEAHNI 774
             DEAHN+
Sbjct:   372 DEAHNL 377

 Score = 93 (37.8 bits), Expect = 4.4e-09, Sum P(4) = 4.4e-09
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query:   543 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLY 579
             F+TRD   ++   G++L ++  +VP GVVCFF SY Y
Sbjct:   659 FQTRDSPQMMEETGRVLSNLCNIVPGGVVCFFPSYEY 695

 Score = 80 (33.2 bits), Expect = 4.8e-16, Sum P(4) = 4.8e-16
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query:   435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLL 476
             FP++  YP Q ++M  L  ALD +   + E P+GTGK+ SL+
Sbjct:    10 FPFQP-YPIQESFMEALYTALDQRKVGIFESPTGTGKSLSLI 50

 Score = 74 (31.1 bits), Expect = 4.8e-16, Sum P(4) = 4.8e-16
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             VTK+ YCSRT  ++ + V E+ +       + + + +  L   SR+NLCI+ E
Sbjct:   205 VTKIYYCSRTHSQLAQFVHEVQKS-----PYGDAVRLVNL--GSRQNLCINPE 250

 Score = 69 (29.3 bits), Expect = 4.8e-16, Sum P(4) = 4.8e-16
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query:   850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQ 880
             ++ + DY  ++  D R+AR+    KLP+WI+
Sbjct:   831 IRHRGDYACIVLCDHRYARTGTLQKLPEWIR 861

 Score = 54 (24.1 bits), Expect = 1.9e-13, Sum P(4) = 1.9e-13
 Identities = 20/90 (22%), Positives = 46/90 (51%)

Query:   115 EAHNIDNVCVDSLSVRINRRTI---EKAVGNIQTLE---GTLKEMKEADSAKLREEYARL 168
             + + I    +++L   +++R +   E   G  ++L    G L  +++ +  + ++E ARL
Sbjct:    13 QPYPIQESFMEALYTALDQRKVGIFESPTGTGKSLSLICGALTWLRDYEEQR-KQEAARL 71

Query:   169 VEGLRDAQSARETDVVLANPVLPDEILQEV 198
             +EG +D+   +E +   + P  PD + + V
Sbjct:    72 LEGQKDSDVVKEKNSN-SGPPEPDWVSEFV 100

 Score = 46 (21.3 bits), Expect = 1.2e-15, Sum P(4) = 1.2e-15
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query:   357 LYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNF 397
             L F  L++++    +    + V+I  GT+ P+  + + L F
Sbjct:   578 LKFLLLNAAVHFAQILQECRAVIIAGGTMQPVADFKEQLLF 618


>UNIPROTKB|F1MMS0 [details] [associations]
            symbol:BRIP1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0006357
            "regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006357
            GO:GO:0004003 TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199
            OMA:GVHKISD EMBL:DAAA02048371 IPI:IPI00923893
            Ensembl:ENSBTAT00000061499 Uniprot:F1MMS0
        Length = 1164

 Score = 149 (57.5 bits), Expect = 5.0e-16, Sum P(4) = 5.0e-16
 Identities = 44/154 (28%), Positives = 75/154 (48%)

Query:    29 GENIPVCDFYEKFDAVGREAPLAP--GVYS---ITKLKEMGRELGLCPYFLARQAIIHAK 83
             G+N   C FY     +  +  L    G++    I +L  +GR+L  CPY+ AR+ + +A 
Sbjct:   240 GKNGKSCYFYHGVHKMSDQHTLQTFQGMHKAWDIEELVSLGRKLKACPYYTARELMQNAD 299

Query:    84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
             I+   Y+YLLD +I   +   L +  VV+ DEAHNI++   +S S  +    +  A   +
Sbjct:   300 IIFCPYNYLLDAQIRETMDINL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 358

Query:   144 QTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS 177
              ++      +++ D   LR     L+  L +A S
Sbjct:   359 DSMINY--NIRKKDHEPLRAVCCSLINWL-EASS 389

 Score = 149 (57.5 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
 Identities = 44/154 (28%), Positives = 75/154 (48%)

Query:   684 GENIPVCDFYEKFDAVGREAPLAP--GVYS---ITKLKEMGRELGLCPYFLARQAIIHAK 738
             G+N   C FY     +  +  L    G++    I +L  +GR+L  CPY+ AR+ + +A 
Sbjct:   240 GKNGKSCYFYHGVHKMSDQHTLQTFQGMHKAWDIEELVSLGRKLKACPYYTARELMQNAD 299

Query:   739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
             I+   Y+YLLD +I   +   L +  VV+ DEAHNI++   +S S  +    +  A   +
Sbjct:   300 IIFCPYNYLLDAQIRETMDINL-KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 358

Query:   799 QTLEGTLKEMKEADSAKLREEYARLVEGLRDAQS 832
              ++      +++ D   LR     L+  L +A S
Sbjct:   359 DSMINY--NIRKKDHEPLRAVCCSLINWL-EASS 389

 Score = 93 (37.8 bits), Expect = 5.0e-16, Sum P(4) = 5.0e-16
 Identities = 29/99 (29%), Positives = 48/99 (48%)

Query:   551 VIRNYGQLLVDIACVVPDG-VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPD 609
             VI N  Q+ V      P G  +C   ++ + E+ FE +D++      G LL+ +   +  
Sbjct:   575 VINN-SQVWVGTIGSGPKGRSLC--ATFQHTET-FEFQDEV------GALLLSVCQTISQ 624

Query:   610 GVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
             G++CF  SY  LE +   W   G+  NL+  K + +E Q
Sbjct:   625 GILCFLPSYKLLEKLKERWLSTGLWYNLELVKTVIVEPQ 663

 Score = 84 (34.6 bits), Expect = 3.1e-12, Sum P(3) = 3.1e-12
 Identities = 37/131 (28%), Positives = 58/131 (44%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMT----GLVLSSRK--NLCI---H 540
             V  ++  S T+  ++    EL   F   ++ N  IN +    G + S  K  +LC    H
Sbjct:   542 VWAIVLTSGTLSPMKSFSSELGVTFTIQLEANHVINNSQVWVGTIGSGPKGRSLCATFQH 601

Query:   541 SE-FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQL 599
             +E FE +D++      G LL+ +   +  G++CF  SY  LE + E    +S    Y   
Sbjct:   602 TETFEFQDEV------GALLLSVCQTISQGILCFLPSYKLLEKLKERW--LSTGLWYNLE 653

Query:   600 LVDIACVVPDG 610
             LV    V P G
Sbjct:   654 LVKTVIVEPQG 664

 Score = 73 (30.8 bits), Expect = 5.0e-16, Sum P(4) = 5.0e-16
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query:   356 VLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMY 391
             VL F CL+ ++A   +  +   +V+TSGTLSP+  +
Sbjct:   523 VLNFWCLNPAVAFSDINGKVWAIVLTSGTLSPMKSF 558

 Score = 73 (30.8 bits), Expect = 5.0e-16, Sum P(4) = 5.0e-16
 Identities = 27/114 (23%), Positives = 57/114 (50%)

Query:   805 LKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLA-NPVLPDEILQGKTDYGIMIFAD 863
             +K+++     +  +++++L  GL   +   E     A N  L    ++ K D+G +I  D
Sbjct:   724 VKDLQVELKRQYNDQHSKL-RGLLPGRQWYEIQAYRALNQAL-GRCIRHKNDWGALILVD 781

Query:   864 KRFARSDKR--SKLPKWIQEYLTDNLTNLSTEEAV-QLSKRWLRQMAQPFTRED 914
              RF  +  R  S L KW+++ +  + T  S  E++ + +K+  + +A   ++ED
Sbjct:   782 DRFRSNPSRYISGLSKWVRQLIQHHSTFESALESLAEFAKKHQKVIAA--SKED 833

 Score = 56 (24.8 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             + K+ + +RT  +I ++  EL R   Y       + MT  +LSSR + C+H E
Sbjct:   179 IPKIYFGTRTHKQIAQITRELQRTA-Y-----SGVPMT--ILSSRDHTCVHPE 223


>UNIPROTKB|J9NVZ8 [details] [associations]
            symbol:BRIP1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491
            INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
            GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 TIGRFAMs:TIGR00604
            GeneTree:ENSGT00530000063199 EMBL:AAEX03006594 EMBL:AAEX03006595
            EMBL:AAEX03006596 Ensembl:ENSCAFT00000045493 Uniprot:J9NVZ8
        Length = 1214

 Score = 146 (56.5 bits), Expect = 6.3e-16, Sum P(4) = 6.3e-16
 Identities = 36/108 (33%), Positives = 57/108 (52%)

Query:   684 GENIPVCDFYEKFDAVGREAPLAP--GV---YSITKLKEMGRELGLCPYFLARQAIIHAK 738
             G+N   C FY     +  +  L    G+   + I +L  +G++L  CPY+ AR+ I  A 
Sbjct:   303 GKNGKSCYFYHGVHKISNQHTLQTLQGMCKAWDIEELVSLGKKLKACPYYTARELIEDAH 362

Query:   739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
             I+   Y+YLLD +I   +   L +  VV+ DEAHNI++   +S S  +
Sbjct:   363 IIFCPYNYLLDAQIRESMDINL-KEQVVILDEAHNIEDCARESASYSV 409

 Score = 146 (56.5 bits), Expect = 1.3e-15, Sum P(4) = 1.3e-15
 Identities = 36/108 (33%), Positives = 57/108 (52%)

Query:    29 GENIPVCDFYEKFDAVGREAPLAP--GV---YSITKLKEMGRELGLCPYFLARQAIIHAK 83
             G+N   C FY     +  +  L    G+   + I +L  +G++L  CPY+ AR+ I  A 
Sbjct:   303 GKNGKSCYFYHGVHKISNQHTLQTLQGMCKAWDIEELVSLGKKLKACPYYTARELIEDAH 362

Query:    84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
             I+   Y+YLLD +I   +   L +  VV+ DEAHNI++   +S S  +
Sbjct:   363 IIFCPYNYLLDAQIRESMDINL-KEQVVILDEAHNIEDCARESASYSV 409

 Score = 116 (45.9 bits), Expect = 6.3e-16, Sum P(4) = 6.3e-16
 Identities = 23/58 (39%), Positives = 37/58 (63%)

Query:   428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
             I  + + FPY+  YP Q A M  + + L++K HCLLE P+G+GK+ +LL   +A+  +
Sbjct:    10 IGGVKITFPYK-AYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCSTLAWQQS 66

 Score = 91 (37.1 bits), Expect = 1.3e-15, Sum P(4) = 1.3e-15
 Identities = 30/99 (30%), Positives = 48/99 (48%)

Query:   551 VIRNYGQLLVDIACVVPDGV-VCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPD 609
             VI N  Q+ V      P G  +C   ++ + E+ FE +D++      G LL+ +   V  
Sbjct:   639 VINN-SQVWVGTIGSGPKGRNLC--ATFQHTET-FEFQDEV------GALLLSVCQTVNQ 688

Query:   610 GVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
             G++CF  SY  LE +   W   G+  NL+  K + +E Q
Sbjct:   689 GILCFLPSYKLLEKLKERWLYTGLWHNLELVKTVIVEPQ 727

 Score = 87 (35.7 bits), Expect = 7.4e-12, Sum P(3) = 7.4e-12
 Identities = 32/106 (30%), Positives = 50/106 (47%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMT----GLVLSSRK--NLCI---H 540
             V  ++  S T+  ++    EL   F   ++ N  IN +    G + S  K  NLC    H
Sbjct:   606 VLTIVLTSGTLSPMKSFSSELGVTFTIQLEANHVINNSQVWVGTIGSGPKGRNLCATFQH 665

Query:   541 SE-FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
             +E FE +D++      G LL+ +   V  G++CF  SY  LE + E
Sbjct:   666 TETFEFQDEV------GALLLSVCQTVNQGILCFLPSYKLLEKLKE 705

 Score = 78 (32.5 bits), Expect = 1.3e-15, Sum P(4) = 1.3e-15
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query:   356 VLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMY 391
             VL F CL+ ++A   +  +  T+V+TSGTLSP+  +
Sbjct:   587 VLNFWCLNPAVAFSDINGKVLTIVLTSGTLSPMKSF 622

 Score = 70 (29.7 bits), Expect = 6.3e-16, Sum P(4) = 6.3e-16
 Identities = 24/95 (25%), Positives = 46/95 (48%)

Query:   805 LKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLA-NPVLPDEILQGKTDYGIMIFAD 863
             +K+++     +  +++++L  GL   +   E     A N  L    ++ K D+G +I  D
Sbjct:   788 VKDLQVELKRQYNDQHSKL-RGLLPGRQWYEIQAYRALNQAL-GRCIRHKNDWGALILVD 845

Query:   864 KRFARSDKR--SKLPKWIQEYLTDNLTNLSTEEAV 896
              RF  +  R  S L KWI++ +  + T  S  E++
Sbjct:   846 DRFRSNPSRYISGLSKWIRQQIQHHSTFESALESL 880

 Score = 56 (24.8 bits), Expect = 6.3e-16, Sum P(4) = 6.3e-16
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             + K+ + +RT  +I ++  EL R   Y       + MT  +LSSR + C+H E
Sbjct:   242 IPKIYFGTRTHKQIAQITRELRRTA-Y-----SGVPMT--ILSSRDHTCVHPE 286

 Score = 42 (19.8 bits), Expect = 4.0e-13, Sum P(4) = 4.0e-13
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query:   809 KEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLP 846
             KE D   L EE+A+ V+  ++  S R T  +      P
Sbjct:   963 KEKDDPVLSEEFAQAVKAEKNVIS-RSTSPIFNKQTKP 999

 Score = 42 (19.8 bits), Expect = 0.00024, Sum P(3) = 0.00024
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query:   154 KEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLP 191
             KE D   L EE+A+ V+  ++  S R T  +      P
Sbjct:   963 KEKDDPVLSEEFAQAVKAEKNVIS-RSTSPIFNKQTKP 999

 Score = 40 (19.1 bits), Expect = 6.3e-13, Sum P(4) = 6.3e-13
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query:   812 DSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQG 852
             D A   EE   LVE  RD +    ++ +L   +     ++G
Sbjct:  1133 DPADTNEEKNELVESDRDNRFVDHSNCILVEDLFEIRTIKG 1173


>UNIPROTKB|E2RHN5 [details] [associations]
            symbol:BRIP1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0031965 "nuclear membrane" evidence=IEA]
            [GO:0006357 "regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
            DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
            SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
            InterPro:IPR014001 SMART:SM00487 TIGRFAMs:TIGR00604
            GeneTree:ENSGT00530000063199 OMA:GVHKISD EMBL:AAEX03006594
            EMBL:AAEX03006595 EMBL:AAEX03006596 Ensembl:ENSCAFT00000028135
            Uniprot:E2RHN5
        Length = 1244

 Score = 146 (56.5 bits), Expect = 7.0e-16, Sum P(4) = 7.0e-16
 Identities = 36/108 (33%), Positives = 57/108 (52%)

Query:   684 GENIPVCDFYEKFDAVGREAPLAP--GV---YSITKLKEMGRELGLCPYFLARQAIIHAK 738
             G+N   C FY     +  +  L    G+   + I +L  +G++L  CPY+ AR+ I  A 
Sbjct:   304 GKNGKSCYFYHGVHKISNQHTLQTLQGMCKAWDIEELVSLGKKLKACPYYTARELIEDAH 363

Query:   739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 786
             I+   Y+YLLD +I   +   L +  VV+ DEAHNI++   +S S  +
Sbjct:   364 IIFCPYNYLLDAQIRESMDINL-KEQVVILDEAHNIEDCARESASYSV 410

 Score = 146 (56.5 bits), Expect = 1.4e-15, Sum P(4) = 1.4e-15
 Identities = 36/108 (33%), Positives = 57/108 (52%)

Query:    29 GENIPVCDFYEKFDAVGREAPLAP--GV---YSITKLKEMGRELGLCPYFLARQAIIHAK 83
             G+N   C FY     +  +  L    G+   + I +L  +G++L  CPY+ AR+ I  A 
Sbjct:   304 GKNGKSCYFYHGVHKISNQHTLQTLQGMCKAWDIEELVSLGKKLKACPYYTARELIEDAH 363

Query:    84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRI 131
             I+   Y+YLLD +I   +   L +  VV+ DEAHNI++   +S S  +
Sbjct:   364 IIFCPYNYLLDAQIRESMDINL-KEQVVILDEAHNIEDCARESASYSV 410

 Score = 116 (45.9 bits), Expect = 7.0e-16, Sum P(4) = 7.0e-16
 Identities = 23/58 (39%), Positives = 37/58 (63%)

Query:   428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
             I  + + FPY+  YP Q A M  + + L++K HCLLE P+G+GK+ +LL   +A+  +
Sbjct:    10 IGGVKITFPYK-AYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCSTLAWQQS 66

 Score = 91 (37.1 bits), Expect = 1.4e-15, Sum P(4) = 1.4e-15
 Identities = 30/99 (30%), Positives = 48/99 (48%)

Query:   551 VIRNYGQLLVDIACVVPDGV-VCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPD 609
             VI N  Q+ V      P G  +C   ++ + E+ FE +D++      G LL+ +   V  
Sbjct:   640 VINN-SQVWVGTIGSGPKGRNLC--ATFQHTET-FEFQDEV------GALLLSVCQTVNQ 689

Query:   610 GVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
             G++CF  SY  LE +   W   G+  NL+  K + +E Q
Sbjct:   690 GILCFLPSYKLLEKLKERWLYTGLWHNLELVKTVIVEPQ 728

 Score = 87 (35.7 bits), Expect = 8.0e-12, Sum P(3) = 8.0e-12
 Identities = 32/106 (30%), Positives = 50/106 (47%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMT----GLVLSSRK--NLCI---H 540
             V  ++  S T+  ++    EL   F   ++ N  IN +    G + S  K  NLC    H
Sbjct:   607 VLTIVLTSGTLSPMKSFSSELGVTFTIQLEANHVINNSQVWVGTIGSGPKGRNLCATFQH 666

Query:   541 SE-FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
             +E FE +D++      G LL+ +   V  G++CF  SY  LE + E
Sbjct:   667 TETFEFQDEV------GALLLSVCQTVNQGILCFLPSYKLLEKLKE 706

 Score = 78 (32.5 bits), Expect = 1.4e-15, Sum P(4) = 1.4e-15
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query:   356 VLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMY 391
             VL F CL+ ++A   +  +  T+V+TSGTLSP+  +
Sbjct:   588 VLNFWCLNPAVAFSDINGKVLTIVLTSGTLSPMKSF 623

 Score = 70 (29.7 bits), Expect = 7.0e-16, Sum P(4) = 7.0e-16
 Identities = 24/95 (25%), Positives = 46/95 (48%)

Query:   805 LKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLA-NPVLPDEILQGKTDYGIMIFAD 863
             +K+++     +  +++++L  GL   +   E     A N  L    ++ K D+G +I  D
Sbjct:   789 VKDLQVELKRQYNDQHSKL-RGLLPGRQWYEIQAYRALNQAL-GRCIRHKNDWGALILVD 846

Query:   864 KRFARSDKR--SKLPKWIQEYLTDNLTNLSTEEAV 896
              RF  +  R  S L KWI++ +  + T  S  E++
Sbjct:   847 DRFRSNPSRYISGLSKWIRQQIQHHSTFESALESL 881

 Score = 56 (24.8 bits), Expect = 7.0e-16, Sum P(4) = 7.0e-16
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             + K+ + +RT  +I ++  EL R   Y       + MT  +LSSR + C+H E
Sbjct:   243 IPKIYFGTRTHKQIAQITRELRRTA-Y-----SGVPMT--ILSSRDHTCVHPE 287

 Score = 42 (19.8 bits), Expect = 4.4e-13, Sum P(4) = 4.4e-13
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query:   809 KEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLP 846
             KE D   L EE+A+ V+  ++  S R T  +      P
Sbjct:   964 KEKDDPVLSEEFAQAVKAEKNVIS-RSTSPIFNKQTKP 1000

 Score = 42 (19.8 bits), Expect = 0.00026, Sum P(3) = 0.00026
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query:   154 KEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLP 191
             KE D   L EE+A+ V+  ++  S R T  +      P
Sbjct:   964 KEKDDPVLSEEFAQAVKAEKNVIS-RSTSPIFNKQTKP 1000

 Score = 40 (19.1 bits), Expect = 7.0e-13, Sum P(4) = 7.0e-13
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query:   812 DSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQG 852
             D A   EE   LVE  RD +    ++ +L   +     ++G
Sbjct:  1134 DPADTNEEKNELVESDRDNRFVDHSNCILVEDLFEIRTIKG 1174


>UNIPROTKB|A8MPP1 [details] [associations]
            symbol:DDX11L8 "Putative ATP-dependent RNA helicase
            DDX11-like protein 8" species:9606 "Homo sapiens" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
            SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005730
            GO:GO:0003677 GO:GO:0003723 GO:GO:0004003 eggNOG:COG1199
            PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 EMBL:AC009533
            IPI:IPI00872853 ProteinModelPortal:A8MPP1 SMR:A8MPP1 STRING:A8MPP1
            PhosphoSite:A8MPP1 PaxDb:A8MPP1 PRIDE:A8MPP1 GeneCards:GC12M000095
            HGNC:HGNC:37101 neXtProt:NX_A8MPP1 HOVERGEN:HBG058884
            InParanoid:A8MPP1 OrthoDB:EOG4B5P4M Genevestigator:A8MPP1
            Uniprot:A8MPP1
        Length = 907

 Score = 145 (56.1 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
 Identities = 36/98 (36%), Positives = 53/98 (54%)

Query:   559 LVDIAC---VVPDG---VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVV 612
             +V+ +C   + PD    V+C   S   LE  F+ RD   ++   G++L ++  VV  GVV
Sbjct:   646 VVEFSCGHVIPPDNIPLVICSGISNQPLEFTFQKRDLPQMMDEVGRILCNLCGVVSGGVV 705

Query:   613 CFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
             CFF+SY YL  V A W   G++  L  RK +F E + A
Sbjct:   706 CFFSSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 743

 Score = 135 (52.6 bits), Expect = 3.9e-10, Sum P(3) = 3.9e-10
 Identities = 65/256 (25%), Positives = 110/256 (42%)

Query:   678 RDRHKAGENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAII 735
             + + +  E    C FY   + +G  R+  LA  V  + +L  +G+E   CPY+ +R AI 
Sbjct:   305 KPKRRRQEKQAACPFYNH-EQMGLLRDEALAE-VKDMEQLLALGKEARACPYYRSRLAIP 362

Query:   736 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 795
              AK+VV  Y  LL           L +  VV+ DEAHN+ +      SV ++   + +A 
Sbjct:   363 AAKLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAH 421

Query:   796 GNI-QTLEGTLKEMKEADSAKLR------EEYARLVEG-LR---DAQSARETDVVLANPV 844
               + Q +E   K +K  +   L+      E++  ++ G ++   + QS  +T   L    
Sbjct:   422 SQLLQYMERYGKRLKAKNLMYLKQILYLLEKFVAVLGGNIKQNPNTQSLSQTGTELKT-- 479

Query:   845 LPDEILQGKTDYGIMIFADKRFARSDKRS-KLPKWIQEYLTDNLTNLSTEEAVQLSKRWL 903
             + D + Q + D  I +F  +R+      S KL  + + Y        S E+      +  
Sbjct:   480 INDFLFQSQID-NINLFKVQRYCEKSMISRKLFGFTERY---GAVFSSREQPKLAGFQQF 535

Query:   904 RQMAQPFTREDMLGVA 919
              Q  QP T E +   A
Sbjct:   536 LQSLQPRTTEALAAPA 551

 Score = 130 (50.8 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
 Identities = 41/144 (28%), Positives = 68/144 (47%)

Query:    23 RDRHKAGENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAII 80
             + + +  E    C FY   + +G  R+  LA  V  + +L  +G+E   CPY+ +R AI 
Sbjct:   305 KPKRRRQEKQAACPFYNH-EQMGLLRDEALAE-VKDMEQLLALGKEARACPYYRSRLAIP 362

Query:    81 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 140
              AK+VV  Y  LL           L +  VV+ DEAHN+ +      SV ++   + +A 
Sbjct:   363 AAKLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAH 421

Query:   141 GNI-QTLEGTLKEMKEADSAKLRE 163
               + Q +E   K +K  +   L++
Sbjct:   422 SQLLQYMERYGKRLKAKNLMYLKQ 445

 Score = 93 (37.8 bits), Expect = 1.9e-10, Sum P(4) = 1.9e-10
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query:   525 NMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
             N+  ++ S   N  +   F+ RD   ++   G++L ++  VV  GVVCFF+SY YL  V
Sbjct:   659 NIPLVICSGISNQPLEFTFQKRDLPQMMDEVGRILCNLCGVVSGGVVCFFSSYEYLRQV 717

 Score = 77 (32.2 bits), Expect = 5.2e-13, Sum P(4) = 5.2e-13
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query:   433 VFFPYEYI-YPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLL 476
             + FP+ +  Y  Q  +M EL + L+A    + E P+GTGK+ SL+
Sbjct:    11 IHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLI 55

 Score = 70 (29.7 bits), Expect = 5.2e-13, Sum P(4) = 5.2e-13
 Identities = 15/65 (23%), Positives = 35/65 (53%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDI 549
             +TK+ +CSRT  ++ + V E+ +         +++ +  L   SR+NLC++ +  +   +
Sbjct:   228 ITKIYHCSRTHSQLAQFVHEVKKS-----PFGKDVRLVSL--GSRQNLCVNEDVRSLGSV 280

Query:   550 SVIRN 554
              +I +
Sbjct:   281 QLIND 285

 Score = 61 (26.5 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query:   850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQ 880
             ++ + D+  ++  D+R+AR    +KLP WI+
Sbjct:   850 IRHQKDFASIVLLDQRYARPPVLAKLPAWIR 880

 Score = 44 (20.5 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
 Identities = 17/70 (24%), Positives = 31/70 (44%)

Query:   327 LATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLS 386
             LA L ++   G  I+      +  ++    L F  L+ ++    V    + VVI  GT+ 
Sbjct:   572 LAALTTANQDGRVIL-----SRQGSLSESTLKFLLLNPAVHFAQVVKECRAVVIAGGTMQ 626

Query:   387 PL-DMYPKIL 395
             P+ D   ++L
Sbjct:   627 PVSDFRQQLL 636

 Score = 42 (19.8 bits), Expect = 1.5e-09, Sum P(4) = 1.5e-09
 Identities = 32/148 (21%), Positives = 66/148 (44%)

Query:   148 GTLKEMKEADSAKLREEYARLVE-GLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTA 206
             G L  +++ +  K REE ARL+E G       ++  + L++         E   G  R A
Sbjct:    57 GALSWLRDFEQKK-REEEARLLETGTGPLHDEKDESLCLSSSC-------EGAAGTPRPA 108

Query:   207 EHFVGFLKRFIEY-----LKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTE 261
                  ++ +F++      L  RL+V+Q  ++     L+ +  +     +  A + +   E
Sbjct:   109 GE-PAWVTQFVQKKEERDLVDRLKVEQARRKQREERLQQLQHRV---QLKYAAKRLRQEE 164

Query:   262 EHLKTRLRV-QQVVQESP-ATFLKDISS 287
             E  +  LR+ +++++  P A  L+ + S
Sbjct:   165 EETENLLRLSREMLETGPEAERLEQLES 192


>UNIPROTKB|F1NN99 [details] [associations]
            symbol:DDX11 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0000790 "nuclear chromatin"
            evidence=IEA] [GO:0000922 "spindle pole" evidence=IEA] [GO:0007062
            "sister chromatid cohesion" evidence=IEA] [GO:0030496 "midbody"
            evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
            SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0003677
            GO:GO:0000790 GO:GO:0004003 GO:GO:0030496 GO:GO:0000922
            PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
            GeneTree:ENSGT00530000063199 GO:GO:0007062 EMBL:AADN02006472
            EMBL:AADN02006473 IPI:IPI00575083 IntAct:F1NN99
            Ensembl:ENSGALT00000021158 Uniprot:F1NN99
        Length = 908

 Score = 141 (54.7 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
 Identities = 36/108 (33%), Positives = 56/108 (51%)

Query:   559 LVDIAC--VVPDG-----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
             +V+ +C  V+P       ++C   S   LE  ++TRD   ++   G++L ++  VVP GV
Sbjct:   649 IVEFSCGHVIPPENILPIILCSGPSNQQLEFTYQTRDLPQMMDETGRILCNLCNVVPGGV 708

Query:   612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKE 659
             VCFF SY Y + V A W   G++  L  +K +F E + A     V  E
Sbjct:   709 VCFFPSYDYEKQVYAHWEKTGLLTRLATKKKIFQEPKKANQVEQVLAE 756

 Score = 122 (48.0 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
 Identities = 40/119 (33%), Positives = 58/119 (48%)

Query:    15 HSLTSSSVRDRHKAGENIPVCDFY--EKFDAVGREAPLAPGVYSITKLKEMGRELGLCPY 72
             H   S +  +  K   +  VC FY  E+   + R+  L   V  I +L  +G+E   CPY
Sbjct:   294 HEKKSDAEVEGKKRRVSRTVCPFYSYEQMQFL-RDEVLVE-VKDIEQLVTLGKETKACPY 351

Query:    73 FLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN-IDNV-CVDSLSV 129
             + +R AI  A++VV  Y  LL     +     L +  VV+ DEAHN ID + C+ S  V
Sbjct:   352 YGSRYAIPAAQLVVLPYQMLLHEATRSAAGIIL-KDQVVIIDEAHNLIDTITCIYSAEV 409

 Score = 122 (48.0 bits), Expect = 5.8e-08, Sum P(3) = 5.8e-08
 Identities = 40/119 (33%), Positives = 58/119 (48%)

Query:   670 HSLTSSSVRDRHKAGENIPVCDFY--EKFDAVGREAPLAPGVYSITKLKEMGRELGLCPY 727
             H   S +  +  K   +  VC FY  E+   + R+  L   V  I +L  +G+E   CPY
Sbjct:   294 HEKKSDAEVEGKKRRVSRTVCPFYSYEQMQFL-RDEVLVE-VKDIEQLVTLGKETKACPY 351

Query:   728 FLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN-IDNV-CVDSLSV 784
             + +R AI  A++VV  Y  LL     +     L +  VV+ DEAHN ID + C+ S  V
Sbjct:   352 YGSRYAIPAAQLVVLPYQMLLHEATRSAAGIIL-KDQVVIIDEAHNLIDTITCIYSAEV 409

 Score = 98 (39.6 bits), Expect = 2.8e-11, Sum P(4) = 2.8e-11
 Identities = 25/76 (32%), Positives = 42/76 (55%)

Query:   511 ARLFDYYIKHN-EEINMTGLVL-SSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPD 568
             AR+ ++   H     N+  ++L S   N  +   ++TRD   ++   G++L ++  VVP 
Sbjct:   647 ARIVEFSCGHVIPPENILPIILCSGPSNQQLEFTYQTRDLPQMMDETGRILCNLCNVVPG 706

Query:   569 GVVCFFTSYLYLESVF 584
             GVVCFF SY Y + V+
Sbjct:   707 GVVCFFPSYDYEKQVY 722

 Score = 72 (30.4 bits), Expect = 5.9e-10, Sum P(3) = 5.9e-10
 Identities = 19/65 (29%), Positives = 34/65 (52%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDI 549
             VTK+ YCSRT  ++ + V E+ +    + K    ++     L SR+NLC++ E      +
Sbjct:   227 VTKIYYCSRTHSQLSQFVHEVQK--SPFGKDTRLVS-----LGSRQNLCVNEEVRRLGAL 279

Query:   550 SVIRN 554
              +I +
Sbjct:   280 QLIND 284

 Score = 67 (28.6 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query:   850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQE 881
             ++ + DY  ++  D R+AR    +KLP+WI+E
Sbjct:   853 IRHQKDYASILLLDHRYARPAILNKLPQWIRE 884

 Score = 50 (22.7 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
 Identities = 13/51 (25%), Positives = 25/51 (49%)

Query:   351 TVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPL-DMYPKILNFQPV 400
             T+    L F  L+ ++    V    + V+I  GT+ P+ D   ++L++  V
Sbjct:   594 TIGQSSLKFLLLNPAVHFAKVVKECRAVIIAGGTMQPVADFREQLLSYAGV 644


>UNIPROTKB|D6RA96 [details] [associations]
            symbol:RTEL1-TNFRSF6B "Protein RTEL1-TNFRSF6B" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
            PROSITE:PS51193 SMART:SM00488 SMART:SM00491 GO:GO:0005524
            GO:GO:0003677 GO:GO:0004003 EMBL:AL121845 EMBL:AL353715
            HOGENOM:HOG000007558 ProteinModelPortal:D6RA96 SMR:D6RA96
            Ensembl:ENST00000492259 HGNC:HGNC:44095 ArrayExpress:D6RA96
            Bgee:D6RA96 Uniprot:D6RA96
        Length = 785

 Score = 169 (64.5 bits), Expect = 1.7e-15, Sum P(4) = 1.7e-15
 Identities = 39/124 (31%), Positives = 63/124 (50%)

Query:   690 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 749
             C FY   +    E  LA  +  I  L + G +  +CPY+L+R     A I+   Y+YLLD
Sbjct:   172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231

Query:   750 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 808
              K     + +L + +VV+FDEAHN++ +C +S S  +    +   +  I Q LE   K  
Sbjct:   232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290

Query:   809 KEAD 812
             ++ +
Sbjct:   291 QQGE 294

 Score = 169 (64.5 bits), Expect = 4.3e-13, Sum P(4) = 4.3e-13
 Identities = 39/124 (31%), Positives = 63/124 (50%)

Query:    35 CDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLD 94
             C FY   +    E  LA  +  I  L + G +  +CPY+L+R     A I+   Y+YLLD
Sbjct:   172 CHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231

Query:    95 PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEM 153
              K     + +L + +VV+FDEAHN++ +C +S S  +    +   +  I Q LE   K  
Sbjct:   232 AKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTKAA 290

Query:   154 KEAD 157
             ++ +
Sbjct:   291 QQGE 294

 Score = 94 (38.1 bits), Expect = 4.3e-13, Sum P(4) = 4.3e-13
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L S F+ R     + + G+ L +IA VVP G++ FF SY  +E  +  W  + +   ++ 
Sbjct:   553 LSSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEA 612

Query:   640 RKLLFIE 646
              K LF+E
Sbjct:   613 LKPLFVE 619

 Score = 88 (36.0 bits), Expect = 1.7e-15, Sum P(4) = 1.7e-15
 Identities = 20/57 (35%), Positives = 35/57 (61%)

Query:   426 LMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
             ++++ + V FP++  Y  Q  YM ++ + L  K + +LE P+GTGKT  LL   +A+
Sbjct:     4 IVLNGVTVDFPFQP-YKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAW 59

 Score = 75 (31.5 bits), Expect = 1.7e-15, Sum P(4) = 1.7e-15
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query:   489 DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRD 547
             D+ K++Y SRT  ++ +V+ EL          N        VL SR+ LCIH E + ++
Sbjct:   105 DIPKIIYASRTHSQLTQVINEL---------RNTSYRPKVCVLGSREQLCIHPEVKKQE 154

 Score = 72 (30.4 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
 Identities = 26/100 (26%), Positives = 44/100 (44%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINM----TGLVLSSRKNLCIHSEFET 545
             V  L+  S T+  +     E+   F   +++   I+      G+V        + S F+ 
Sbjct:   500 VRSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDR 559

Query:   546 RDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
             R     + + G+ L +IA VVP G++ FF SY  +E   E
Sbjct:   560 RFSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLE 599

 Score = 45 (20.9 bits), Expect = 4.3e-13, Sum P(4) = 4.3e-13
 Identities = 11/50 (22%), Positives = 26/50 (52%)

Query:   343 EPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDR-FQTVVITSGTLSPLDMY 391
             + +S  A      VL + C     ++  +  +  +++++TSGTL+P+  +
Sbjct:   467 DAWSTTAARKRGKVLSYWCFSPGHSMHELVRQGVRSLILTSGTLAPVSSF 516

 Score = 41 (19.5 bits), Expect = 1.7e-15, Sum P(4) = 1.7e-15
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLS 891
             +++ + DYG +   D R  R     + P  +++ L+   + L+
Sbjct:   726 VIRHRQDYGAVFLCDHRCQRRPPGLQHPVCVEKMLSARPSRLA 768

 Score = 39 (18.8 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
 Identities = 29/129 (22%), Positives = 50/129 (38%)

Query:   170 EGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTA--EHFVGF--LKRFIEYLKTRLR 225
             E LRD  SAR+        + PD  L     GN   A  +    +  + + I   +T  +
Sbjct:    61 EHLRDGISARKIAERAQGELFPDRALSSW--GNAAAAAGDPIACYTDIPKIIYASRTHSQ 118

Query:   226 VQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTE------EHLKTRLRVQQVVQESPA 279
             + QV+ E     L++ S +P   ++    +     E       HL+  L  ++V   S  
Sbjct:   119 LTQVINE-----LRNTSYRPKVCVLGSREQLCIHPEVKKQESNHLQIHLCRKKVASRS-C 172

Query:   280 TFLKDISSK 288
              F  ++  K
Sbjct:   173 HFYNNVEEK 181


>DICTYBASE|DDB_G0286621 [details] [associations]
            symbol:fncJ "DEAD/DEAH box helicase" species:44689
            "Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
            on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
            anhydrides" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
            metabolic process" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
            evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006302
            "double-strand break repair" evidence=ISS] [GO:0005634 "nucleus"
            evidence=IEA;IC] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR002464
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
            SMART:SM00491 dictyBase:DDB_G0286621 INTERPRO:IPR013020
            GO:GO:0005524 GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0003677
            EMBL:AAFI02000089 GO:GO:0004003 GO:GO:0006302 InterPro:IPR014001
            SMART:SM00487 eggNOG:COG1199 TIGRFAMs:TIGR00604 KO:K15362
            RefSeq:XP_637574.1 ProteinModelPortal:Q54LI7
            EnsemblProtists:DDB0232367 GeneID:8625714 KEGG:ddi:DDB_G0286621
            InParanoid:Q54LI7 Uniprot:Q54LI7
        Length = 1078

 Score = 145 (56.1 bits), Expect = 2.9e-15, Sum P(4) = 2.9e-15
 Identities = 29/75 (38%), Positives = 47/75 (62%)

Query:    54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
             V+ I  L E G+    CPYF +R  I  A ++   Y+YL+DP+I    + ++A  S+V+F
Sbjct:   514 VWDIEDLMEAGQAHSECPYFASRDMIEKADLIFCPYNYLIDPQIRKSFADKVA-GSIVIF 572

Query:   114 DEAHNIDNVCVDSLS 128
             DEAHNI++  +++ S
Sbjct:   573 DEAHNIEDALMETSS 587

 Score = 145 (56.1 bits), Expect = 5.9e-14, Sum P(4) = 5.9e-14
 Identities = 29/75 (38%), Positives = 47/75 (62%)

Query:   709 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 768
             V+ I  L E G+    CPYF +R  I  A ++   Y+YL+DP+I    + ++A  S+V+F
Sbjct:   514 VWDIEDLMEAGQAHSECPYFASRDMIEKADLIFCPYNYLIDPQIRKSFADKVA-GSIVIF 572

Query:   769 DEAHNIDNVCVDSLS 783
             DEAHNI++  +++ S
Sbjct:   573 DEAHNIEDALMETSS 587

 Score = 104 (41.7 bits), Expect = 2.9e-15, Sum P(4) = 2.9e-15
 Identities = 26/90 (28%), Positives = 46/90 (51%)

Query:   597 GQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ------DA 650
             G+ ++    ++P GV+CFF SY +LE +++ W + GI+  +  +K  F E +      + 
Sbjct:   872 GETILQHIELIPSGVLCFFPSYGFLEKLLSRWDETGILKKINAKKRYFYEPKNQREFIET 931

Query:   651 LDS-RSVSKERDGK--IVDGRCHSLTSSSV 677
             LD+ R   K+R  K  I+   C    S  +
Sbjct:   932 LDNYREEIKQRPNKGAILFAVCRGKVSEGI 961

 Score = 99 (39.9 bits), Expect = 5.9e-14, Sum P(4) = 5.9e-14
 Identities = 23/55 (41%), Positives = 35/55 (63%)

Query:   428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
             I +  V FP++  Y  Q + M  + + LD+K +C+LE P+GTGKT SLL   +A+
Sbjct:   193 IGNYKVKFPFKP-YACQASMMSRILEGLDSKENCILESPTGTGKTLSLLCSSLAW 246

 Score = 79 (32.9 bits), Expect = 9.3e-13, Sum P(4) = 9.3e-13
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query:   535 KNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIR 594
             K +C H   E  D    +   G+ ++    ++P GV+CFF SY +LE +    D+  +++
Sbjct:   854 KLICTHGPSEGLDFQDSL---GETILQHIELIPSGVLCFFPSYGFLEKLLSRWDETGILK 910

 Score = 71 (30.1 bits), Expect = 2.9e-15, Sum P(4) = 2.9e-15
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query:   850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLST 892
             ++ K DYG ++  D+RF +    + L KW +  + +N  NL+T
Sbjct:  1022 IRHKNDYGSILLIDERFTQMGNWNSLSKWTRSCIKNN-RNLNT 1063

 Score = 59 (25.8 bits), Expect = 2.9e-15, Sum P(4) = 2.9e-15
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query:   366 LAIKPVFDRFQTVVITSGTLSPLDMYP 392
             +A   +    ++VV+TSGTLSPL  +P
Sbjct:   792 IAFSSLVQATRSVVLTSGTLSPLYSFP 818

 Score = 51 (23.0 bits), Expect = 5.9e-14, Sum P(4) = 5.9e-14
 Identities = 21/72 (29%), Positives = 35/72 (48%)

Query:   493 LLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVI 552
             + +CSRT  +I+++  EL +   Y        NM  +VL+SR   CI+     +D    +
Sbjct:   429 IFFCSRTHSQIKQLTGELKKT-PY------RPNM--VVLASRDQYCINPLL--KDVPKKL 477

Query:   553 RNYGQLLVDIAC 564
                 +LL+D  C
Sbjct:   478 EKCKKLLLDHGC 489


>UNIPROTKB|Q92771 [details] [associations]
            symbol:DDX12P "Putative ATP-dependent RNA helicase DDX12"
            species:9606 "Homo sapiens" [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0007049
            GO:GO:0004003 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
            HOGENOM:HOG000241266 HOVERGEN:HBG058884 EMBL:AC092821 EMBL:AC141557
            EMBL:U33834 IPI:IPI00023299 UniGene:Hs.447869 UniGene:Hs.504688
            ProteinModelPortal:Q92771 SMR:Q92771 STRING:Q92771
            PhosphoSite:Q92771 DMDM:182705254 PRIDE:Q92771
            GeneCards:GC12M009720 HGNC:HGNC:2737 MIM:601151 neXtProt:NX_Q92771
            InParanoid:Q92771 ArrayExpress:Q92771 CleanEx:HS_DDX12
            Genevestigator:Q92771 Uniprot:Q92771
        Length = 950

 Score = 142 (55.0 bits), Expect = 6.7e-15, Sum P(4) = 6.7e-15
 Identities = 36/99 (36%), Positives = 52/99 (52%)

Query:   559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
             +V+ +C   + PD     V+C   S   LE  F+ RD   ++   G++L ++  VV  GV
Sbjct:   663 VVEFSCGHVIPPDNILPLVICSGVSNQPLEFTFQKRDLPQMMDEVGRILCNLCGVVSGGV 722

Query:   612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
             VCFF SY YL  V A W   G++  L  RK +F E + A
Sbjct:   723 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 761

 Score = 131 (51.2 bits), Expect = 6.2e-09, Sum P(3) = 6.2e-09
 Identities = 64/256 (25%), Positives = 111/256 (43%)

Query:   678 RDRHKAGENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAII 735
             + + +  E    C FY   + +G  R+  LA  V  + +L  +G+E   CPY+ +R AI 
Sbjct:   322 KPKRRRQEKQAACPFYNH-EQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIP 379

Query:   736 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 795
              A++VV  Y  LL           L +  VV+ DEAHN+ +      SV ++   + +A 
Sbjct:   380 AAQLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTTTSMHSVEVSGSQLCQAH 438

Query:   796 GNI-QTLEGTLKEMKEADSAKLR------EEYARLVEG-LR---DAQSARETDVVLANPV 844
               + Q +E   K +K  +   L+      E++  ++ G ++   + QS  +T + L    
Sbjct:   439 SQLLQYMERYGKRLKAKNLMYLKQILYLLEKFVAVLGGNIKQNPNTQSLSQTGMELKT-- 496

Query:   845 LPDEILQGKTDYGIMIFADKRFARSDKRS-KLPKWIQEYLTDNLTNLSTEEAVQLSKRWL 903
             + D + Q + D  I +F  +R+      S KL  + + Y        S E+      +  
Sbjct:   497 INDFLFQSQID-NINLFKVQRYCEKSMISRKLFGFTERY---GAVFSSREQPKLAGFQQF 552

Query:   904 RQMAQPFTREDMLGVA 919
              Q  QP T E +   A
Sbjct:   553 LQSLQPRTTEALAAPA 568

 Score = 125 (49.1 bits), Expect = 6.7e-15, Sum P(4) = 6.7e-15
 Identities = 40/144 (27%), Positives = 68/144 (47%)

Query:    23 RDRHKAGENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAII 80
             + + +  E    C FY   + +G  R+  LA  V  + +L  +G+E   CPY+ +R AI 
Sbjct:   322 KPKRRRQEKQAACPFYNH-EQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIP 379

Query:    81 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 140
              A++VV  Y  LL           L +  VV+ DEAHN+ +      SV ++   + +A 
Sbjct:   380 AAQLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTTTSMHSVEVSGSQLCQAH 438

Query:   141 GNI-QTLEGTLKEMKEADSAKLRE 163
               + Q +E   K +K  +   L++
Sbjct:   439 SQLLQYMERYGKRLKAKNLMYLKQ 462

 Score = 91 (37.1 bits), Expect = 1.0e-09, Sum P(4) = 1.0e-09
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query:   525 NMTGLVLSSR-KNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
             N+  LV+ S   N  +   F+ RD   ++   G++L ++  VV  GVVCFF SY YL  V
Sbjct:   676 NILPLVICSGVSNQPLEFTFQKRDLPQMMDEVGRILCNLCGVVSGGVVCFFPSYEYLRQV 735

 Score = 75 (31.5 bits), Expect = 5.3e-12, Sum P(4) = 5.3e-12
 Identities = 16/65 (24%), Positives = 35/65 (53%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDI 549
             +TK+ +CSRT  ++ + V E+ +         +++ +  L   SR+NLC++ +  +   +
Sbjct:   245 ITKIYHCSRTHSQLAQFVHEVKKS-----PFGKDVRLVSL--GSRQNLCVNEDVRSLGSV 297

Query:   550 SVIRN 554
              +I N
Sbjct:   298 QLINN 302

 Score = 65 (27.9 bits), Expect = 5.3e-12, Sum P(4) = 5.3e-12
 Identities = 16/52 (30%), Positives = 28/52 (53%)

Query:   425 GLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLL 476
             G+  D   + F    +  ++  +M EL + L+A    + E P+GTGK+ SL+
Sbjct:    23 GVCPDSRGLAFSVAILPAKKEDFMAELYRVLEAGKIGIFESPTGTGKSLSLI 74

 Score = 62 (26.9 bits), Expect = 6.7e-15, Sum P(4) = 6.7e-15
 Identities = 21/75 (28%), Positives = 35/75 (46%)

Query:   813 SAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ--GKT-----DYGIMIFADKR 865
             SA+L+E+ A L + L  A         L   +    + Q  G+      D+  ++  D+R
Sbjct:   824 SAELQEKMAYLDQTLPRAPGQAHPGKALVENLCMKAVNQSIGRAIRHQKDFASIVLLDQR 883

Query:   866 FARSDKRSKLPKWIQ 880
             +AR    +KLP WI+
Sbjct:   884 YARPPVLAKLPAWIR 898

 Score = 44 (20.5 bits), Expect = 6.7e-15, Sum P(4) = 6.7e-15
 Identities = 15/65 (23%), Positives = 28/65 (43%)

Query:   327 LATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLS 386
             LA L ++   G  I+      +  ++    L F  L+ ++    V    + VVI  GT+ 
Sbjct:   589 LAALTTANQDGRVIL-----SRQGSLSQSTLKFLLLNPAVHFAQVVKECRAVVIAGGTMQ 643

Query:   387 PLDMY 391
             P+  +
Sbjct:   644 PVSNF 648

 Score = 40 (19.1 bits), Expect = 1.6e-09, Sum P(4) = 1.6e-09
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query:   148 GTLKEMKEADSAKLREEYARLVE 170
             G L  +++ +  K REE ARL+E
Sbjct:    76 GALSWLRDFEQKK-REEEARLLE 97


>UNIPROTKB|F1SK84 [details] [associations]
            symbol:DDX11 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0030496 "midbody" evidence=IEA] [GO:0007062 "sister
            chromatid cohesion" evidence=IEA] [GO:0000922 "spindle pole"
            evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
            DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
            SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0003677
            GO:GO:0000790 GO:GO:0004003 GO:GO:0030496 GO:GO:0000922
            PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
            GeneTree:ENSGT00530000063199 GO:GO:0007062 EMBL:CU861969
            Ensembl:ENSSSCT00000000809 OMA:HQISKRD Uniprot:F1SK84
        Length = 682

 Score = 137 (53.3 bits), Expect = 1.1e-14, Sum P(4) = 1.1e-14
 Identities = 36/108 (33%), Positives = 55/108 (50%)

Query:   559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
             +V+ +C   + PD     V+C   +   LE  ++ R+   ++   G++L ++  VVP GV
Sbjct:   414 VVEFSCGHVIPPDNILPLVICSGPANQQLEFTYQKRELPQMMDETGRILCNLCNVVPGGV 473

Query:   612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKE 659
             VCFF SY Y   V A W   G++  L  RK +F E + A     V KE
Sbjct:   474 VCFFPSYEYQRQVHAHWDRSGLLARLAVRKKIFQEPKRANQVEQVLKE 521

 Score = 119 (46.9 bits), Expect = 1.1e-14, Sum P(4) = 1.1e-14
 Identities = 39/139 (28%), Positives = 64/139 (46%)

Query:    19 SSSVRDRHKAGENIPVCDFY--EKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLAR 76
             +   + R +  E    C FY  E+   + R+  L  G   I +L  +G+E   CPY+ +R
Sbjct:    71 AEEAKPRRRKQEQRTACPFYSHERLQLL-RDEVLV-GAKDIEQLVALGKEARACPYYGSR 128

Query:    77 QAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTI 136
              AI  A++VV  Y  +L           L +  VV+ DEAHN+ +      SV ++   +
Sbjct:   129 FAIPAAQLVVLPYQMVLHAATRQAAGIRL-QGQVVLVDEAHNLMDTITGIHSVEVSGSQL 187

Query:   137 EKAVGNI-QTLEGTLKEMK 154
              +A   + Q +E   K +K
Sbjct:   188 CQAHSQLLQYMERYGKRLK 206

 Score = 119 (46.9 bits), Expect = 8.6e-07, Sum P(3) = 8.6e-07
 Identities = 39/139 (28%), Positives = 64/139 (46%)

Query:   674 SSSVRDRHKAGENIPVCDFY--EKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLAR 731
             +   + R +  E    C FY  E+   + R+  L  G   I +L  +G+E   CPY+ +R
Sbjct:    71 AEEAKPRRRKQEQRTACPFYSHERLQLL-RDEVLV-GAKDIEQLVALGKEARACPYYGSR 128

Query:   732 QAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTI 791
              AI  A++VV  Y  +L           L +  VV+ DEAHN+ +      SV ++   +
Sbjct:   129 FAIPAAQLVVLPYQMVLHAATRQAAGIRL-QGQVVLVDEAHNLMDTITGIHSVEVSGSQL 187

Query:   792 EKAVGNI-QTLEGTLKEMK 809
              +A   + Q +E   K +K
Sbjct:   188 CQAHSQLLQYMERYGKRLK 206

 Score = 85 (35.0 bits), Expect = 2.2e-09, Sum P(4) = 2.2e-09
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query:   525 NMTGLVL-SSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
             N+  LV+ S   N  +   ++ R+   ++   G++L ++  VVP GVVCFF SY Y   V
Sbjct:   427 NILPLVICSGPANQQLEFTYQKRELPQMMDETGRILCNLCNVVPGGVVCFFPSYEYQRQV 486

 Score = 65 (27.9 bits), Expect = 1.1e-14, Sum P(4) = 1.1e-14
 Identities = 23/76 (30%), Positives = 41/76 (53%)

Query:   813 SAKLREEYARLVEGLRDA--QSARETDVV--LANPVLPDEI---LQGKTDYGIMIFADKR 865
             SA+L+E+ A L + L  A  Q+A    +V  L    +   I   ++ + D+  ++  D+R
Sbjct:   575 SAELQEKMAYLDQTLPRAPGQAAPGKALVENLCMKAVNQSIGRAIRHQKDFASIVLLDQR 634

Query:   866 FARSDKRSKLPKWIQE 881
             +AR    +KLP WI++
Sbjct:   635 YARPPILAKLPAWIRD 650

 Score = 61 (26.5 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
 Identities = 16/63 (25%), Positives = 32/63 (50%)

Query:   492 KLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISV 551
             ++ YCSRT  ++ + V E+ R    + K    ++     L SR+NLC++ +      + +
Sbjct:     1 QIYYCSRTHSQLAQFVHEVQR--SPFGKDTRLVS-----LGSRQNLCVNDDVRKLGSVQL 53

Query:   552 IRN 554
             I +
Sbjct:    54 IND 56

 Score = 43 (20.2 bits), Expect = 1.1e-14, Sum P(4) = 1.1e-14
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query:   357 LYFCCLDSSLAIKPVFDRFQTVVITSGTLSPL-DMYPKIL 395
             L F  L+ ++    V    + VVI  GT+ P+ D   ++L
Sbjct:   365 LKFLLLNPAVHFAQVVKECRAVVIAGGTMQPVSDFREQLL 404

 Score = 37 (18.1 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query:     5 RDGKIVDGRCHSLTSSSVR 23
             +DG+++  R  SL+ SS++
Sbjct:   348 QDGRVILSRQGSLSQSSLK 366

 Score = 37 (18.1 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
 Identities = 14/40 (35%), Positives = 16/40 (40%)

Query:   301 ERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAI 340
             ERL  LLR   +    D   LV +   A     Y   FAI
Sbjct:    93 ERL-QLLRDEVLVGAKDIEQLVALGKEARACPYYGSRFAI 131

 Score = 37 (18.1 bits), Expect = 0.00020, Sum P(3) = 0.00020
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query:   660 RDGKIVDGRCHSLTSSSVR 678
             +DG+++  R  SL+ SS++
Sbjct:   348 QDGRVILSRQGSLSQSSLK 366


>MGI|MGI:2443590 [details] [associations]
            symbol:Ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
            [GO:0000922 "spindle pole" evidence=ISO] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
            DNA helicase activity" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=IEA]
            [GO:0007049 "cell cycle" evidence=IEA] [GO:0007062 "sister
            chromatid cohesion" evidence=ISO] [GO:0008026 "ATP-dependent
            helicase activity" evidence=IEA] [GO:0008094 "DNA-dependent ATPase
            activity" evidence=ISO] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
            anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
            on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0030496 "midbody" evidence=ISO] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster
            binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
            binding" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 MGI:MGI:2443590 INTERPRO:IPR013020
            GO:GO:0005524 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
            GO:GO:0051539 GO:GO:0003723 GO:GO:0000790 GO:GO:0004003
            GO:GO:0004386 GO:GO:0030496 GO:GO:0000922 GO:GO:0008094
            eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
            HOGENOM:HOG000241266 OMA:NLGRCVV GeneTree:ENSGT00530000063199
            GO:GO:0007062 HOVERGEN:HBG058884 OrthoDB:EOG4B5P4M CTD:1663
            EMBL:BC079656 IPI:IPI00460651 RefSeq:NP_001003919.1
            UniGene:Mm.259605 ProteinModelPortal:Q6AXC6 SMR:Q6AXC6
            STRING:Q6AXC6 PhosphoSite:Q6AXC6 PRIDE:Q6AXC6
            Ensembl:ENSMUST00000163605 GeneID:320209 KEGG:mmu:320209
            UCSC:uc008dha.1 InParanoid:Q6AXC6 NextBio:396263 Bgee:Q6AXC6
            Genevestigator:Q6AXC6 GermOnline:ENSMUSG00000035842 Uniprot:Q6AXC6
        Length = 880

 Score = 138 (53.6 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
 Identities = 33/99 (33%), Positives = 52/99 (52%)

Query:   559 LVDIAC---VVPDGV----VCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
             +V+ +C   + PD +    +C   S   LE  ++ R+   ++   G++L ++  VVP GV
Sbjct:   616 VVEFSCGHVIPPDNILPLIICSGPSNQQLEFTYQRRELPQMVEETGRILCNLCNVVPGGV 675

Query:   612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
             VCF  SY YL  V A W   G++  L  RK +F E + A
Sbjct:   676 VCFLPSYEYLRQVHAHWDKTGLLTRLSVRKKIFQEPKRA 714

 Score = 124 (48.7 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
 Identities = 57/234 (24%), Positives = 106/234 (45%)

Query:   663 KIVDGRCHSLTSSSVRDRHKAGENIPV---------CDFY--EKFDAVGREAPLAPGVYS 711
             ++++ RC  +  S  R+++  GE+ P          C FY  E+ + +  E  L   V  
Sbjct:   251 QLMNDRCVDMQRSK-REKNGTGEDKPKRKRQKIQTSCPFYNHEQMELLRDEILLE--VKD 307

Query:   712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
             + +L  +G+E   CPY+ +R AI  A++VV  Y  LL           L +  VV+ DEA
Sbjct:   308 MEQLVALGKEARACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRL-QGQVVIIDEA 366

Query:   772 HNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEMKEADSAKLR------EEYARLV 824
             HN+ +   +  S  +N   + +A   + Q +E   K +K  +   ++      E++  ++
Sbjct:   367 HNLIDTITNIHSTEVNGSQLCQAHSQLLQYMERYRKRLKAKNLMYIKQILYLLEKFVAVL 426

Query:   825 EG-LRD---AQSARETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSK 874
              G ++     QS  +T   L +  + D + Q + D  I +F  +R+      S+
Sbjct:   427 GGNVKQNPTTQSLSQTGSELKS--INDFLFQSQVD-NINLFKVQRYLEKSMLSR 477

 Score = 123 (48.4 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
 Identities = 44/159 (27%), Positives = 75/159 (47%)

Query:     8 KIVDGRCHSLTSSSVRDRHKAGENIPV---------CDFY--EKFDAVGREAPLAPGVYS 56
             ++++ RC  +  S  R+++  GE+ P          C FY  E+ + +  E  L   V  
Sbjct:   251 QLMNDRCVDMQRSK-REKNGTGEDKPKRKRQKIQTSCPFYNHEQMELLRDEILLE--VKD 307

Query:    57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
             + +L  +G+E   CPY+ +R AI  A++VV  Y  LL           L +  VV+ DEA
Sbjct:   308 MEQLVALGKEARACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRL-QGQVVIIDEA 366

Query:   117 HNIDNVCVDSLSVRINRRTIEKAVGNI-QTLEGTLKEMK 154
             HN+ +   +  S  +N   + +A   + Q +E   K +K
Sbjct:   367 HNLIDTITNIHSTEVNGSQLCQAHSQLLQYMERYRKRLK 405

 Score = 89 (36.4 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
 Identities = 18/55 (32%), Positives = 30/55 (54%)

Query:   529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
             ++ S   N  +   ++ R+   ++   G++L ++  VVP GVVCF  SY YL  V
Sbjct:   634 IICSGPSNQQLEFTYQRRELPQMVEETGRILCNLCNVVPGGVVCFLPSYEYLRQV 688

 Score = 82 (33.9 bits), Expect = 2.5e-12, Sum P(4) = 2.5e-12
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query:   433 VFFPYEYI-YPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLL 476
             + FP+ +  YP Q  +M EL K L+     + E P+GTGK+ SL+
Sbjct:    11 IHFPFPFPPYPIQKDFMAELYKVLEGGKIGIFESPTGTGKSLSLI 55

 Score = 65 (27.9 bits), Expect = 2.5e-12, Sum P(4) = 2.5e-12
 Identities = 15/65 (23%), Positives = 33/65 (50%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDI 549
             +TK+ YCSRT  ++ + V E+ +         +E  +  L   SR+ LC++ + +    +
Sbjct:   198 ITKIYYCSRTHSQLAQFVREVLKS-----PFGKETRLVSL--GSRQTLCVNEDVKNLGSV 250

Query:   550 SVIRN 554
              ++ +
Sbjct:   251 QLMND 255

 Score = 61 (26.5 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query:   850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQE 881
             ++ + D+  ++  D R+AR    +KLP WI++
Sbjct:   821 IRHQRDFASIVLLDHRYARPSILAKLPAWIRD 852

 Score = 47 (21.6 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
 Identities = 18/70 (25%), Positives = 32/70 (45%)

Query:   327 LATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLS 386
             LA L ++   G  I+     ++  +V    L F  L+ ++    V    + VVI  GT+ 
Sbjct:   542 LAALTTANQDGRVIV-----NRQGSVGQSSLKFLLLNPAVHFAQVVKECRAVVIAGGTMQ 596

Query:   387 PL-DMYPKIL 395
             P+ D   ++L
Sbjct:   597 PMSDFREQLL 606


>UNIPROTKB|E2RGR5 [details] [associations]
            symbol:DDX11 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0030496 "midbody" evidence=IEA] [GO:0007062
            "sister chromatid cohesion" evidence=IEA] [GO:0000922 "spindle
            pole" evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
            DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
            SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0003677
            GO:GO:0000790 GO:GO:0004003 GO:GO:0030496 GO:GO:0000922
            PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
            GeneTree:ENSGT00530000063199 GO:GO:0007062 EMBL:AAEX03015316
            Ensembl:ENSCAFT00000024894 Uniprot:E2RGR5
        Length = 908

 Score = 138 (53.6 bits), Expect = 1.6e-14, Sum P(5) = 1.6e-14
 Identities = 35/108 (32%), Positives = 54/108 (50%)

Query:   559 LVDIAC---VVPDGV----VCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
             +V+ +C   + PD +    +C   S   LE  ++ R+   ++   G++L ++  VVP GV
Sbjct:   646 VVEFSCGHVIPPDNILPLIICSGPSSQQLEFTYQKRELPQMMDETGRILCNLCTVVPGGV 705

Query:   612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKE 659
             VCFF SY Y   V A W   G++  L  RK +F E + A     V  E
Sbjct:   706 VCFFPSYEYQRQVYAHWDKSGLLARLAVRKKIFQEPKRANQVEQVLME 753

 Score = 129 (50.5 bits), Expect = 1.6e-14, Sum P(5) = 1.6e-14
 Identities = 42/143 (29%), Positives = 67/143 (46%)

Query:    15 HSLTSSSVRDRHKAGENIPVCDFY--EKFDAVGREAPLAPGVYSITKLKEMGRELGLCPY 72
             H   +   + + +  E+   C FY  E+   + R+  L  GV  I +L  +G+E   CPY
Sbjct:   296 HKNRAEEEKPKRRRQEHQAACPFYNYEQLQLL-RDQVLV-GVKDIEQLVALGKEARACPY 353

Query:    73 FLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 132
             + +R AI  A++VV  Y  LL           L +  VVV DEAHN+ +      SV ++
Sbjct:   354 YGSRFAIPAAQLVVLPYQMLLHAATRQAAGIRL-QGQVVVIDEAHNLIDTITGIHSVEVS 412

Query:   133 RRTIEKAVGNI-QTLEGTLKEMK 154
                + +A   + Q +E   K +K
Sbjct:   413 GSQLCQAHSQLLQYMERYGKRLK 435

 Score = 129 (50.5 bits), Expect = 4.1e-12, Sum P(4) = 4.1e-12
 Identities = 42/143 (29%), Positives = 67/143 (46%)

Query:   670 HSLTSSSVRDRHKAGENIPVCDFY--EKFDAVGREAPLAPGVYSITKLKEMGRELGLCPY 727
             H   +   + + +  E+   C FY  E+   + R+  L  GV  I +L  +G+E   CPY
Sbjct:   296 HKNRAEEEKPKRRRQEHQAACPFYNYEQLQLL-RDQVLV-GVKDIEQLVALGKEARACPY 353

Query:   728 FLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRIN 787
             + +R AI  A++VV  Y  LL           L +  VVV DEAHN+ +      SV ++
Sbjct:   354 YGSRFAIPAAQLVVLPYQMLLHAATRQAAGIRL-QGQVVVIDEAHNLIDTITGIHSVEVS 412

Query:   788 RRTIEKAVGNI-QTLEGTLKEMK 809
                + +A   + Q +E   K +K
Sbjct:   413 GSQLCQAHSQLLQYMERYGKRLK 435

 Score = 85 (35.0 bits), Expect = 2.7e-09, Sum P(5) = 2.7e-09
 Identities = 17/56 (30%), Positives = 31/56 (55%)

Query:   529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVF 584
             ++ S   +  +   ++ R+   ++   G++L ++  VVP GVVCFF SY Y   V+
Sbjct:   664 IICSGPSSQQLEFTYQKRELPQMMDETGRILCNLCTVVPGGVVCFFPSYEYQRQVY 719

 Score = 81 (33.6 bits), Expect = 4.5e-13, Sum P(4) = 4.5e-13
 Identities = 20/65 (30%), Positives = 36/65 (55%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDI 549
             VTK+ YCSRT  ++ + V E+ R    + K    ++     L SR+NLC++ + +T   +
Sbjct:   226 VTKIYYCSRTHSQLAQFVHEVQR--SPFGKDTRLVS-----LGSRQNLCVNEDVKTLGSV 278

Query:   550 SVIRN 554
              +I +
Sbjct:   279 QLIND 283

 Score = 74 (31.1 bits), Expect = 4.5e-13, Sum P(4) = 4.5e-13
 Identities = 16/45 (35%), Positives = 27/45 (60%)

Query:   433 VFFPYEYI-YPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLL 476
             + FP+ +  Y  Q  +M EL + L+A    + E P+GTGK+ S++
Sbjct:    11 IHFPFPFTPYSIQKDFMAELYRVLEAGKIGIFESPTGTGKSLSVI 55

 Score = 61 (26.5 bits), Expect = 1.6e-14, Sum P(5) = 1.6e-14
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query:   850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQE 881
             ++ + D+  ++  D+R+AR     KLP WI++
Sbjct:   851 IRHQKDFASIVLLDQRYARPPILEKLPAWIRD 882

 Score = 43 (20.2 bits), Expect = 1.6e-14, Sum P(5) = 1.6e-14
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query:   357 LYFCCLDSSLAIKPVFDRFQTVVITSGTLSPL-DMYPKIL 395
             L F  L+ ++    V    + VVI  GT+ P+ D   ++L
Sbjct:   597 LKFLLLNPAVHFAQVVKECRAVVIAGGTMQPVSDFREQLL 636

 Score = 38 (18.4 bits), Expect = 1.6e-14, Sum P(5) = 1.6e-14
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query:   270 VQQVVQESPATFLKDISSKVCIERKPLRFCAERLASL 306
             +Q  V ++P T ++D  ++V     PL      LA+L
Sbjct:   539 LQPTVTKTPVTPVEDGEARVPRPASPLMHIESFLAAL 575

 Score = 37 (18.1 bits), Expect = 1.1e-05, Sum P(4) = 1.1e-05
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query:     5 RDGKIVDGRCHSLTSSSVR 23
             +DG+++  R  SL+ SS++
Sbjct:   580 QDGRVILSRQGSLSQSSLK 598

 Score = 37 (18.1 bits), Expect = 0.00026, Sum P(4) = 0.00026
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query:   660 RDGKIVDGRCHSLTSSSVR 678
             +DG+++  R  SL+ SS++
Sbjct:   580 QDGRVILSRQGSLSQSSLK 598


>MGI|MGI:2442836 [details] [associations]
            symbol:Brip1 "BRCA1 interacting protein C-terminal helicase
            1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
            DNA helicase activity" evidence=IEA] [GO:0004386 "helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
            evidence=ISO] [GO:0006139 "nucleobase-containing compound metabolic
            process" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0006357 "regulation of transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0006974 "response to DNA damage
            stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0008285 "negative regulation of cell
            proliferation" evidence=ISO] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
            anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
            on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
            [GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
            "4 iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
            PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 MGI:MGI:2442836
            INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0006357
            GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
            CleanEx:MM_BACH1 eggNOG:COG1199 TIGRFAMs:TIGR00604
            GeneTree:ENSGT00530000063199 CTD:83990 HOGENOM:HOG000068083
            HOVERGEN:HBG081519 KO:K15362 OrthoDB:EOG4J6RQ8 EMBL:AL592465
            EMBL:AL592065 EMBL:AL645690 EMBL:BC094252 EMBL:AK051878
            EMBL:AK080771 IPI:IPI00319607 RefSeq:NP_840094.1 UniGene:Mm.186143
            ProteinModelPortal:Q5SXJ3 SMR:Q5SXJ3 STRING:Q5SXJ3
            PhosphoSite:Q5SXJ3 PRIDE:Q5SXJ3 Ensembl:ENSMUST00000044423
            GeneID:237911 KEGG:mmu:237911 UCSC:uc007ksf.2 InParanoid:Q5SXJ3
            OMA:GVHKISD ChiTaRS:BRIP1 NextBio:383570 Bgee:Q5SXJ3
            CleanEx:MM_BRIP1 Genevestigator:Q5SXJ3
            GermOnline:ENSMUSG00000034329 Uniprot:Q5SXJ3
        Length = 1174

 Score = 153 (58.9 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
 Identities = 40/130 (30%), Positives = 67/130 (51%)

Query:   684 GENIPVCDFYEKFDAVGREAPLA--PGV---YSITKLKEMGRELGLCPYFLARQAIIHAK 738
             G++   C FY     +  +  L    G+   + I +L  +GR+L  CPY+ AR+ I  A 
Sbjct:   307 GKHGKSCYFYHGVHKISNQQTLQHLQGMSRAWDIEELVSLGRKLKACPYYTARELIEDAD 366

Query:   739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
             IV   Y+YLLD +I   +  +L +  VV+ DEAHNI++   +S S  +    +  A   +
Sbjct:   367 IVFCPYNYLLDSQIRETMDIKL-KGQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 425

Query:   799 QTL-EGTLKE 807
              +L  G +++
Sbjct:   426 DSLINGNIRK 435

 Score = 153 (58.9 bits), Expect = 3.9e-12, Sum P(3) = 3.9e-12
 Identities = 40/130 (30%), Positives = 67/130 (51%)

Query:    29 GENIPVCDFYEKFDAVGREAPLA--PGV---YSITKLKEMGRELGLCPYFLARQAIIHAK 83
             G++   C FY     +  +  L    G+   + I +L  +GR+L  CPY+ AR+ I  A 
Sbjct:   307 GKHGKSCYFYHGVHKISNQQTLQHLQGMSRAWDIEELVSLGRKLKACPYYTARELIEDAD 366

Query:    84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
             IV   Y+YLLD +I   +  +L +  VV+ DEAHNI++   +S S  +    +  A   +
Sbjct:   367 IVFCPYNYLLDSQIRETMDIKL-KGQVVILDEAHNIEDCARESASYSVTEVQLRFARDEL 425

Query:   144 QTL-EGTLKE 152
              +L  G +++
Sbjct:   426 DSLINGNIRK 435

 Score = 102 (41.0 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query:   428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY---MN 484
             I  + + FP    YP Q A M  + + L++  HCLLE P+G+GK+ +LL   +A+   ++
Sbjct:    10 IGGVKIHFPCR-AYPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAWQQSLS 68

Query:   485 AHPLD 489
               P+D
Sbjct:    69 EKPVD 73

 Score = 87 (35.7 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
 Identities = 57/251 (22%), Positives = 106/251 (42%)

Query:   152 EMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEH--F 209
             ++K      + +E   + +  R++ S   T+V L      DE L  ++ GNIR   H   
Sbjct:   385 DIKLKGQVVILDEAHNIEDCARESASYSVTEVQLR--FARDE-LDSLINGNIRKKSHEPL 441

Query:   210 VGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLR 269
                    I +L+T  +   +V+    +  K  S      M+   YR   +T      +  
Sbjct:   442 RDVCYNLINWLETNSK--HLVERGYESSCKIWSGN---EMLLNLYRMGITTATFPVLQRH 496

Query:   270 VQQVVQ-ESPATFL--KDISSKVCIERKPLRFCAERLASLLRTLEITN---LTDFSSLVV 323
             +  V+Q E   T +  K+ + ++ I     +   + L  +L  L   N     D+   + 
Sbjct:   497 LSAVLQKEEKVTPIHGKEEAIQIPIISASTQVVLKGLFMVLDYLFRENSRFADDYKVAIQ 556

Query:   324 ITHLAT-LVSSYTKGFAIIVEPFSDK--APTVPNPVLYFCCLDSSLAIKPVFDRFQTVVI 380
              T+  T  ++ + K   ++  P + K     +    L F CL+ ++A   + D+ +T+V+
Sbjct:   557 QTYSWTNQIAIFDKT-GVLAVPKNKKHSRQKIGVNALNFWCLNPAVAFSDINDKVRTIVL 615

Query:   381 TSGTLSPLDMY 391
             TSGTLSPL  +
Sbjct:   616 TSGTLSPLKSF 626

 Score = 85 (35.0 bits), Expect = 3.9e-12, Sum P(3) = 3.9e-12
 Identities = 29/99 (29%), Positives = 47/99 (47%)

Query:   551 VIRNYGQLLVDIACVVPDGV-VCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPD 609
             VI N  Q+ V      P G  +C   ++ + E+ FE +D++      G LL+ +   V  
Sbjct:   643 VISN-SQVWVGTVGSGPKGRNLC--ATFQHTET-FEFQDEV------GMLLLSVCQTVSQ 692

Query:   610 GVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
             G++CF  SY  LE +   W   G+  +L+  K +  E Q
Sbjct:   693 GILCFLPSYKLLEKLRERWIFTGLWHSLESVKTVIAEPQ 731

 Score = 67 (28.6 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
 Identities = 16/55 (29%), Positives = 31/55 (56%)

Query:   850 LQGKTDYGIMIFADKRFARSDKR--SKLPKWIQEYLTDNLTNLSTEEAV-QLSKR 901
             ++ K D+G +I  D RF  +  R  S L KW+++ +  + +  S  E++ + S+R
Sbjct:   836 IRHKNDWGALILVDDRFNNNPNRYISGLSKWVRQQIQHHSSFASALESLTEFSRR 890

 Score = 51 (23.0 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query:   492 KLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             K+ + +RT  +I ++  EL R   Y       + MT  +LSSR + C+H E
Sbjct:   248 KIYFGTRTHKQIAQITREL-RKTAY-----SGVPMT--ILSSRDHSCVHPE 290


>UNIPROTKB|I3LBL1 [details] [associations]
            symbol:BRIP1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0006357
            "regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
            GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0006357
            GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
            GeneTree:ENSGT00530000063199 EMBL:CU914462 EMBL:CU694840
            Ensembl:ENSSSCT00000025154 OMA:TEAWDIE Uniprot:I3LBL1
        Length = 709

 Score = 139 (54.0 bits), Expect = 5.3e-14, Sum P(3) = 5.3e-14
 Identities = 34/129 (26%), Positives = 66/129 (51%)

Query:   710 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 769
             + I +L  +G+++  CPY+ AR+ +  A I+   Y+YLLD +I   +   L +  VV+ D
Sbjct:   340 WDIEELVTLGKKIKACPYYTARELMQDADIIFCPYNYLLDVQIRESMEINL-KEQVVILD 398

Query:   770 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR- 828
             EAHNI++   +S S  +    +  A   + ++   +  +++ D   +R     L+  L  
Sbjct:   399 EAHNIEDCARESASYSVTEVQLRFARDELDSM--VINNIRKKDHEPIRAVCYSLINWLEV 456

Query:   829 DAQSARETD 837
             +++   E D
Sbjct:   457 NSEHLMERD 465

 Score = 139 (54.0 bits), Expect = 7.7e-09, Sum P(3) = 7.7e-09
 Identities = 34/129 (26%), Positives = 66/129 (51%)

Query:    55 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 114
             + I +L  +G+++  CPY+ AR+ +  A I+   Y+YLLD +I   +   L +  VV+ D
Sbjct:   340 WDIEELVTLGKKIKACPYYTARELMQDADIIFCPYNYLLDVQIRESMEINL-KEQVVILD 398

Query:   115 EAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR- 173
             EAHNI++   +S S  +    +  A   + ++   +  +++ D   +R     L+  L  
Sbjct:   399 EAHNIEDCARESASYSVTEVQLRFARDELDSM--VINNIRKKDHEPIRAVCYSLINWLEV 456

Query:   174 DAQSARETD 182
             +++   E D
Sbjct:   457 NSEHLMERD 465

 Score = 121 (47.7 bits), Expect = 5.3e-14, Sum P(3) = 5.3e-14
 Identities = 27/75 (36%), Positives = 45/75 (60%)

Query:   418 VRENYAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLS 477
             +R  Y +G     + + FPY+  YP Q A M  + + L++K HCLLE P+G+GK+ +LL 
Sbjct:     4 IRSEYTIG----GVKIDFPYK-AYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLC 58

Query:   478 LIVAY---MNAHPLD 489
               +A+   ++  P+D
Sbjct:    59 SALAWQQSLSGKPVD 73

 Score = 73 (30.8 bits), Expect = 7.7e-09, Sum P(3) = 7.7e-09
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query:   356 VLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMY 391
             VL F CL+ ++A   +  +   +V+TSGTLSP+  +
Sbjct:   593 VLNFWCLNPAVAFSDINGKVWNIVLTSGTLSPMKSF 628

 Score = 72 (30.4 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
 Identities = 24/94 (25%), Positives = 42/94 (44%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMT----GLVLSSR--KNLCIHSEF 543
             V  ++  S T+  ++    EL   F   ++ N  IN +    G + S    +NLC  + F
Sbjct:   612 VWNIVLTSGTLSPMKSFSSELGVTFTIQLEANHVINNSQVWVGTIGSGPQGRNLC--ATF 669

Query:   544 ETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 577
             +  +  +     G LL+ +   V  G++CF  SY
Sbjct:   670 QHTETFAFQDEVGALLLSVCQTVSQGILCFLPSY 703

 Score = 56 (24.8 bits), Expect = 5.3e-14, Sum P(3) = 5.3e-14
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             + K+ + +RT  +I ++  EL R   Y       + MT  +LSSR + C+H E
Sbjct:   248 IPKIYFGTRTHKQIAQITRELRRTA-Y-----SGVPMT--ILSSRDHTCVHPE 292

 Score = 53 (23.7 bits), Expect = 7.7e-09, Sum P(3) = 7.7e-09
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query:   582 SVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 618
             + F+  +  +     G LL+ +   V  G++CF  SY
Sbjct:   667 ATFQHTETFAFQDEVGALLLSVCQTVSQGILCFLPSY 703

 Score = 37 (18.1 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query:   265 KTRLRVQQVVQESPATFLKDISSKV 289
             KT +RV      +PA    DI+ KV
Sbjct:   588 KTAVRVLNFWCLNPAVAFSDINGKV 612


>UNIPROTKB|Q96FC9 [details] [associations]
            symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
            species:9606 "Homo sapiens" [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
            [GO:0046872 "metal ion binding" evidence=IEA] [GO:0051539 "4 iron,
            4 sulfur cluster binding" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0007062 "sister chromatid
            cohesion" evidence=IDA] [GO:0000790 "nuclear chromatin"
            evidence=IDA] [GO:0030496 "midbody" evidence=IDA] [GO:0000922
            "spindle pole" evidence=IDA] [GO:0008094 "DNA-dependent ATPase
            activity" evidence=IDA] [GO:0004386 "helicase activity"
            evidence=IDA] [GO:0000086 "G2/M transition of mitotic cell cycle"
            evidence=TAS] [GO:0000070 "mitotic sister chromatid segregation"
            evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
            evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=TAS]
            [GO:0008284 "positive regulation of cell proliferation"
            evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006987
            "activation of signaling protein activity involved in unfolded
            protein response" evidence=TAS] [GO:0030968 "endoplasmic reticulum
            unfolded protein response" evidence=TAS] InterPro:IPR006554
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
            InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
            PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
            GO:GO:0005524 Reactome:REACT_116125 GO:GO:0000086 GO:GO:0019048
            GO:GO:0005654 GO:GO:0006987 GO:GO:0005730 GO:GO:0046872
            GO:GO:0003677 GO:GO:0008284 GO:GO:0051539 GO:GO:0003723
            GO:GO:0000790 GO:GO:0000070 GO:GO:0004003 GO:GO:0030496
            GO:GO:0000922 GO:GO:0000084 GO:GO:0003678 GO:GO:0008094
            eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
            CleanEx:HS_CHL1 OMA:NLGRCVV GO:GO:0007062 HOVERGEN:HBG058884
            OrthoDB:EOG4B5P4M EMBL:X99583 EMBL:U33833 EMBL:U75967 EMBL:U75968
            EMBL:BC050069 EMBL:BC050522 IPI:IPI00012188 IPI:IPI00332293
            IPI:IPI00657836 IPI:IPI00658184 IPI:IPI00942296 PIR:G02071
            RefSeq:NP_001244073.1 RefSeq:NP_001244074.1 RefSeq:NP_004390.3
            RefSeq:NP_689651.1 UniGene:Hs.443960 ProteinModelPortal:Q96FC9
            SMR:Q96FC9 IntAct:Q96FC9 MINT:MINT-1371028 STRING:Q96FC9
            PhosphoSite:Q96FC9 DMDM:74731686 PaxDb:Q96FC9 PRIDE:Q96FC9
            DNASU:1663 Ensembl:ENST00000228264 Ensembl:ENST00000251758
            Ensembl:ENST00000350437 Ensembl:ENST00000407793
            Ensembl:ENST00000435753 Ensembl:ENST00000542838
            Ensembl:ENST00000545668 GeneID:1663 KEGG:hsa:1663 UCSC:uc001rjr.1
            UCSC:uc001rjs.1 UCSC:uc001rjt.1 UCSC:uc001rju.1 CTD:1663
            GeneCards:GC12P031226 HGNC:HGNC:2736 MIM:601150 MIM:613398
            neXtProt:NX_Q96FC9 Orphanet:280558 PharmGKB:PA27201
            InParanoid:Q96FC9 PhylomeDB:Q96FC9 GenomeRNAi:1663 NextBio:6842
            ArrayExpress:Q96FC9 Bgee:Q96FC9 CleanEx:HS_DDX11
            Genevestigator:Q96FC9 GermOnline:ENSG00000013573 Uniprot:Q96FC9
        Length = 970

 Score = 145 (56.1 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
 Identities = 36/99 (36%), Positives = 53/99 (53%)

Query:   559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
             +V+ +C   + PD     V+C   S   LE  F+ R+   ++   G++L ++  VVP GV
Sbjct:   644 VVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGV 703

Query:   612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
             VCFF SY YL  V A W   G++  L  RK +F E + A
Sbjct:   704 VCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSA 742

 Score = 128 (50.1 bits), Expect = 6.8e-10, Sum P(3) = 6.8e-10
 Identities = 64/256 (25%), Positives = 110/256 (42%)

Query:   678 RDRHKAGENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAII 735
             + + +  E    C FY   + +G  R+  LA  V  + +L  +G+E   CPY+ +R AI 
Sbjct:   303 KPKRRRQEKQAACPFYNH-EQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIP 360

Query:   736 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 795
              A++VV  Y  LL           L +  VV+ DEAHN+ +      SV ++   + +A 
Sbjct:   361 AAQLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAH 419

Query:   796 GNI-QTLEGTLKEMKEADSAKLR------EEYARLVEG-LR---DAQSARETDVVLANPV 844
               + Q +E   K +K  +   L+      E++  ++ G ++   + QS  +T   L    
Sbjct:   420 SQLLQYVERYGKRLKAKNLMYLKQILYLLEKFVAVLGGNIKQNPNTQSLSQTGTELKT-- 477

Query:   845 LPDEILQGKTDYGIMIFADKRFARSDKRS-KLPKWIQEYLTDNLTNLSTEEAVQLSKRWL 903
             + D + Q + D  I +F  +R+      S KL  + + Y        S E+      +  
Sbjct:   478 INDFLFQSQID-NINLFKVQRYCEKSMISRKLFGFTERY---GAVFSSREQPKLAGFQQF 533

Query:   904 RQMAQPFTREDMLGVA 919
              Q  QP T E +   A
Sbjct:   534 LQSLQPRTTEALAAPA 549

 Score = 123 (48.4 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
 Identities = 40/144 (27%), Positives = 68/144 (47%)

Query:    23 RDRHKAGENIPVCDFYEKFDAVG--REAPLAPGVYSITKLKEMGRELGLCPYFLARQAII 80
             + + +  E    C FY   + +G  R+  LA  V  + +L  +G+E   CPY+ +R AI 
Sbjct:   303 KPKRRRQEKQAACPFYNH-EQMGLLRDEALAE-VKDMEQLLALGKEARACPYYGSRLAIP 360

Query:    81 HAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 140
              A++VV  Y  LL           L +  VV+ DEAHN+ +      SV ++   + +A 
Sbjct:   361 AAQLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAHNLIDTITGMHSVEVSGSQLCQAH 419

Query:   141 GNI-QTLEGTLKEMKEADSAKLRE 163
               + Q +E   K +K  +   L++
Sbjct:   420 SQLLQYVERYGKRLKAKNLMYLKQ 443

 Score = 95 (38.5 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
 Identities = 23/60 (38%), Positives = 34/60 (56%)

Query:   525 NMTGLVLSSR-KNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
             N+  LV+ S   N  +   F+ R+   ++   G++L ++  VVP GVVCFF SY YL  V
Sbjct:   657 NILPLVICSGISNQPLEFTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQV 716

 Score = 77 (32.2 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query:   433 VFFPYEYI-YPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLL 476
             + FP+ +  Y  Q  +M EL + L+A    + E P+GTGK+ SL+
Sbjct:    11 IHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLI 55

 Score = 76 (31.8 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
 Identities = 16/65 (24%), Positives = 36/65 (55%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDI 549
             +TK+ YCSRT  ++ + V E+ +         +++ +  L   SR+NLC++ + ++   +
Sbjct:   226 ITKIYYCSRTHSQLAQFVHEVKKS-----PFGKDVRLVSL--GSRQNLCVNEDVKSLGSV 278

Query:   550 SVIRN 554
              +I +
Sbjct:   279 QLIND 283

 Score = 48 (22.0 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
 Identities = 24/97 (24%), Positives = 42/97 (43%)

Query:   301 ERLASLLRTLEITNLTDFSSLVVIT-HLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYF 359
             E LA+     + + L   S L+ I   LA L ++   G  I+      +  ++    L F
Sbjct:   543 EALAAPADESQASTLRPASPLMHIQGFLAALTTANQDGRVIL-----SRQGSLSQSTLKF 597

Query:   360 CCLDSSLAIKPVFDRFQTVVITSGTLSPL-DMYPKIL 395
               L+ ++    V    + VVI  GT+ P+ D   ++L
Sbjct:   598 LLLNPAVHFAQVVKECRAVVIAGGTMQPVSDFRQQLL 634

 Score = 40 (19.1 bits), Expect = 5.8e-08, Sum P(3) = 5.8e-08
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query:   148 GTLKEMKEADSAKLREEYARLVE 170
             G L  +++ +  K REE ARL+E
Sbjct:    57 GALSWLRDFEQKK-REEEARLLE 78


>TAIR|locus:2016209 [details] [associations]
            symbol:AT1G79950 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
            evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
            anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
            on acid anhydrides, in phosphorus-containing anhydrides"
            evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006346
            "methylation-dependent chromatin silencing" evidence=RCA]
            [GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009616 "virus
            induced gene silencing" evidence=RCA] [GO:0009855 "determination of
            bilateral symmetry" evidence=RCA] [GO:0010014 "meristem initiation"
            evidence=RCA] [GO:0010073 "meristem maintenance" evidence=RCA]
            [GO:0010267 "production of ta-siRNAs involved in RNA interference"
            evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=RCA] InterPro:IPR003822 InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
            PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020 EMBL:CP002684
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
            GO:GO:0003677 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
            TIGRFAMs:TIGR00604 Gene3D:1.20.1160.11 SUPFAM:SSF47762 KO:K11136
            OMA:PFPPLKD IPI:IPI00530732 RefSeq:NP_178113.3 UniGene:At.34013
            ProteinModelPortal:F4HQE2 SMR:F4HQE2 PRIDE:F4HQE2
            EnsemblPlants:AT1G79950.1 GeneID:844335 KEGG:ath:AT1G79950
            ArrayExpress:F4HQE2 Uniprot:F4HQE2
        Length = 1040

 Score = 127 (49.8 bits), Expect = 3.1e-13, Sum P(4) = 3.1e-13
 Identities = 39/188 (20%), Positives = 81/188 (43%)

Query:   641 KLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVG 700
             K++ + +++ L          GK +   C  L     + +      +P  D+ +    +G
Sbjct:   170 KMVVLGSREQLCVNEEVNSLRGKALTNACQYLCKKRGKRQCNHFNRLP--DYLKHNPHIG 227

Query:   701 REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL 760
              E P+      I  L  +G++ G CPY++ R+      I+   Y+YL+       +    
Sbjct:   228 DE-PV-----DIEDLVNIGKDSGPCPYYITRELHKDVDIIFAPYNYLISNGYRKFLKVNW 281

Query:   761 ARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEA-DSAKLREE 819
               +SV++FDEAHN++++C DS S  +    +   +   Q         +++ +   +  E
Sbjct:   282 T-NSVLIFDEAHNLESLCADSASFDLPSVLLSACISEAQECVQLAAARRDSLNDVSINPE 340

Query:   820 YARLVEGL 827
                +++GL
Sbjct:   341 NFAILKGL 348

 Score = 126 (49.4 bits), Expect = 1.2e-11, Sum P(4) = 1.2e-11
 Identities = 37/167 (22%), Positives = 73/167 (43%)

Query:     7 GKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRE 66
             GK +   C  L     + +      +P  D+ +    +G E P+      I  L  +G++
Sbjct:   191 GKALTNACQYLCKKRGKRQCNHFNRLP--DYLKHNPHIGDE-PV-----DIEDLVNIGKD 242

Query:    67 LGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDS 126
              G CPY++ R+      I+   Y+YL+       +      +SV++FDEAHN++++C DS
Sbjct:   243 SGPCPYYITRELHKDVDIIFAPYNYLISNGYRKFLKVNWT-NSVLIFDEAHNLESLCADS 301

Query:   127 LSVRINRRTIEKAVGNIQTLEGTLKEMKEA-DSAKLREEYARLVEGL 172
              S  +    +   +   Q         +++ +   +  E   +++GL
Sbjct:   302 ASFDLPSVLLSACISEAQECVQLAAARRDSLNDVSINPENFAILKGL 348

 Score = 100 (40.3 bits), Expect = 3.1e-13, Sum P(4) = 3.1e-13
 Identities = 24/55 (43%), Positives = 32/55 (58%)

Query:   428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY 482
             I  + V FP+E  Y  Q  YM  + ++L  K H LLE P+GTGKT  LL   +A+
Sbjct:    51 IRGINVEFPFE-AYQSQIIYMDRVIESLQNKCHALLESPTGTGKTLCLLCATLAW 104

 Score = 91 (37.1 bits), Expect = 1.2e-11, Sum P(4) = 1.2e-11
 Identities = 33/129 (25%), Positives = 56/129 (43%)

Query:   569 GVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASW 628
             GVV    S   L S +  RD     +  G  +V+ + VVP+G++ FF SY  ++S +  W
Sbjct:   524 GVVSTGPSGYVLNSSYRNRDVPEYKQELGNAIVNFSRVVPEGLLIFFPSYYLMDSCITFW 583

Query:   629 ----YDQGII--DNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHK 682
                 Y   +   + + K K   IE +D+    +  ++   K+ D     +   +V  R K
Sbjct:   584 KNGCYRNSMTVWERICKLKKPVIEPKDSSLFPAAMRDFSEKLQDRATSGVVFFAVC-RGK 642

Query:   683 AGENIPVCD 691
               E +   D
Sbjct:   643 VSEGLDFAD 651

 Score = 88 (36.0 bits), Expect = 1.7e-10, Sum P(3) = 1.7e-10
 Identities = 23/97 (23%), Positives = 48/97 (49%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMT----GLVLSSRKNLCIHSEFET 545
             V  ++  S T+  ++ + +EL   F   +++   I+      G+V +      ++S +  
Sbjct:   482 VGSIILTSGTLSPMDSLAQELKLDFPIRLENPHVISSNQLWAGVVSTGPSGYVLNSSYRN 541

Query:   546 RDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLES 582
             RD     +  G  +V+ + VVP+G++ FF SY  ++S
Sbjct:   542 RDVPEYKQELGNAIVNFSRVVPEGLLIFFPSYYLMDS 578

 Score = 74 (31.1 bits), Expect = 3.1e-13, Sum P(4) = 3.1e-13
 Identities = 12/32 (37%), Positives = 22/32 (68%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQ 880
             +++ + DYG +IF D RF +  ++SK+  WI+
Sbjct:   717 VIRHRHDYGAIIFCDDRFEQPSQQSKISLWIR 748

 Score = 58 (25.5 bits), Expect = 3.1e-13, Sum P(4) = 3.1e-13
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query:   493 LLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             ++Y SRT  ++ +V++EL R   Y  K         +VL SR+ LC++ E
Sbjct:   145 IVYASRTHSQLRQVIKELKRS-SYRPKM--------VVLGSREQLCVNEE 185

 Score = 52 (23.4 bits), Expect = 1.2e-11, Sum P(4) = 1.2e-11
 Identities = 8/13 (61%), Positives = 13/13 (100%)

Query:   377 TVVITSGTLSPLD 389
             ++++TSGTLSP+D
Sbjct:   484 SIILTSGTLSPMD 496

 Score = 38 (18.4 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query:   792 EKAVGNIQTLEGTLKEMKE-ADSAKL 816
             +K VG+I    GTL  M   A   KL
Sbjct:   479 QKGVGSIILTSGTLSPMDSLAQELKL 504


>TAIR|locus:2030497 [details] [associations]
            symbol:AT1G20720 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0016817 "hydrolase activity, acting on acid anhydrides"
            evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
            anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006261
            "DNA-dependent DNA replication" evidence=RCA] InterPro:IPR006554
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
            SMART:SM00491 EMBL:CP002684 GO:GO:0005739 GO:GO:0005524
            GO:GO:0003677 GO:GO:0004003 KO:K15362 OMA:EKELDDS IPI:IPI00524588
            RefSeq:NP_173495.5 UniGene:At.51696 ProteinModelPortal:F4HUN4
            SMR:F4HUN4 PRIDE:F4HUN4 EnsemblPlants:AT1G20720.1 GeneID:838662
            KEGG:ath:AT1G20720 Uniprot:F4HUN4
        Length = 1175

 Score = 161 (61.7 bits), Expect = 3.6e-13, Sum P(4) = 3.6e-13
 Identities = 68/261 (26%), Positives = 125/261 (47%)

Query:    10 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAP-G---VYSITKLKEMGR 65
             VD  C  L    ++D  KA  NI  C  ++  + +     L P G   V+ I  L ++G+
Sbjct:   198 VDDECRLL----LKD--KA--NIQ-CSEFKNVNKITSHPSLQPRGHNEVHDIEDLVKVGK 248

Query:    66 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVD 125
              +  CPYF +     +A++V   Y Y+++P I   V  +L + ++++FDEAHN++++  +
Sbjct:   249 NVRGCPYFASWSMAENAQLVFCPYSYIVNPVIRAGVEVDL-KGAIIIFDEAHNMEDIARE 307

Query:   126 SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL-------RDAQSA 178
             + S+ +   T+ K       L+  L++M  A    + +    +VEGL       +D+ + 
Sbjct:   308 AGSINLEEDTLFK-------LQNELEQMSVAQPM-IYQPLCEVVEGLISWIGRKKDSLAK 359

Query:   179 RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL 238
             R+     ++    D+ L+E+   NI T E F   L+ F + ++T    ++   ES   +L
Sbjct:   360 RDFQHYFSSWT-GDKALRELEESNI-TRECFPILLECFTKAIRTS---KEAEMESDMLYL 414

Query:   239 KDISSKPAPSMISEAYRYIFS 259
               IS      + S +  Y FS
Sbjct:   415 SGISVLTLEELFS-SLTYFFS 434

 Score = 138 (53.6 bits), Expect = 8.7e-13, Sum P(3) = 8.7e-13
 Identities = 46/167 (27%), Positives = 85/167 (50%)

Query:   665 VDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAP-G---VYSITKLKEMGR 720
             VD  C  L    ++D  KA  NI  C  ++  + +     L P G   V+ I  L ++G+
Sbjct:   198 VDDECRLL----LKD--KA--NIQ-CSEFKNVNKITSHPSLQPRGHNEVHDIEDLVKVGK 248

Query:   721 ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVD 780
              +  CPYF +     +A++V   Y Y+++P I   V  +L + ++++FDEAHN++++  +
Sbjct:   249 NVRGCPYFASWSMAENAQLVFCPYSYIVNPVIRAGVEVDL-KGAIIIFDEAHNMEDIARE 307

Query:   781 SLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGL 827
             + S+ +   T+ K       L+  L++M  A    + +    +VEGL
Sbjct:   308 AGSINLEEDTLFK-------LQNELEQMSVAQPM-IYQPLCEVVEGL 346

 Score = 105 (42.0 bits), Expect = 8.7e-13, Sum P(3) = 8.7e-13
 Identities = 32/81 (39%), Positives = 43/81 (53%)

Query:   428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAK---GHC--LLEMPSGTGKTTSLLSLIVAY 482
             I  L V FPY+  Y  Q A+M  +   LD     GHC  LLE P+GTGK+ SLL  ++A+
Sbjct:    29 IGGLQVEFPYQP-YGTQLAFMSRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSVLAW 87

Query:   483 MNAHPLDVTK-LLYCSRTVPE 502
                +   + K  L  S+  PE
Sbjct:    88 QQNYKSRLLKGNLSHSKAAPE 108

 Score = 89 (36.4 bits), Expect = 3.6e-13, Sum P(4) = 3.6e-13
 Identities = 25/78 (32%), Positives = 37/78 (47%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L + ++T D  S     G+ L +I  +VP G + FF SY  +E +   W +      L  
Sbjct:   536 LNASYKTADAYSFQDALGKSLEEICTIVPGGSLVFFPSYKLMEKLCMRWRETEQWSRLCL 595

Query:   640 RKLLFIE----TQDALDS 653
             +K LF+E     QD  DS
Sbjct:   596 KKDLFVEPRGGAQDEFDS 613

 Score = 77 (32.2 bits), Expect = 5.6e-12, Sum P(4) = 5.6e-12
 Identities = 29/111 (26%), Positives = 55/111 (49%)

Query:   361 CLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMVRE 420
             C++ ++  K + D   +V++TSGTLSP++ +   L  Q      F  +L  P ++    +
Sbjct:   468 CMNPAVVFKDLADISLSVILTSGTLSPMNSFSSELGMQ------FGTSLEAPHVIDPNMQ 521

Query:   421 NYAMGLMIDDLPVFFPYEYIYP--EQYAYMVELKKALDAKGHCLLEMPSGT 469
              +A G  I + P  +P    Y   + Y++   L K+L+    C + +P G+
Sbjct:   522 VWA-GA-ISNGPSNYPLNASYKTADAYSFQDALGKSLEEI--CTI-VPGGS 567

 Score = 69 (29.3 bits), Expect = 3.6e-13, Sum P(4) = 3.6e-13
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query:   850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQE 881
             ++ + DYG +IF D+R+     R+ + KW+++
Sbjct:   731 IRHRFDYGAIIFLDERYKEQRNRASISKWLRQ 762

 Score = 53 (23.7 bits), Expect = 6.1e-07, Sum P(4) = 6.1e-07
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDI 549
             +  + Y SRT  +I +V+ E       Y K    + M   VL+SRK+ C +     +D++
Sbjct:   148 IPTIYYASRTHSQITQVIRE-------YRKTGYRVPMA--VLASRKHYCTNRHVLGKDNV 198

 Score = 43 (20.2 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query:   647 TQDALDSRSVSKERDGKIVDGRCHSLTSS 675
             TQ A  SR +S   D    DG CH+L  S
Sbjct:    43 TQLAFMSRVIST-LDRAQRDGHCHALLES 70

 Score = 40 (19.1 bits), Expect = 3.6e-13, Sum P(4) = 3.6e-13
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query:    13 RCHSLTSSSVRDRHKAGENIPV 34
             R HS  +  +R+  K G  +P+
Sbjct:   156 RTHSQITQVIREYRKTGYRVPM 177

 Score = 38 (18.4 bits), Expect = 6.4e-09, Sum P(4) = 6.4e-09
 Identities = 15/50 (30%), Positives = 21/50 (42%)

Query:   612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERD 661
             + FF  +L + +  AS       D+  K K    ET  A+D   V K  D
Sbjct:  1097 ILFFADHLEVTNEAASK------DSTLKHKEPLAETNAAVDKSDVLKSID 1140

 Score = 37 (18.1 bits), Expect = 7.1e-13, Sum P(4) = 7.1e-13
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query:    11 DGRCHSLTSS 20
             DG CH+L  S
Sbjct:    61 DGHCHALLES 70


>FB|FBgn0026876 [details] [associations]
            symbol:CG11403 species:7227 "Drosophila melanogaster"
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
            [GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0004386
            "helicase activity" evidence=ISS] [GO:0032508 "DNA duplex
            unwinding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491
            INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
            EMBL:AE014298 GO:GO:0006200 GO:GO:0004003 GO:GO:0004386
            InterPro:IPR014001 SMART:SM00487 eggNOG:COG1199 KO:K11273
            PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
            GeneTree:ENSGT00530000063199 EMBL:AL121806 EMBL:AY058540
            RefSeq:NP_569898.1 UniGene:Dm.4169 SMR:Q9XZS9 STRING:Q9XZS9
            EnsemblMetazoa:FBtr0070245 GeneID:31072 KEGG:dme:Dmel_CG11403
            UCSC:CG11403-RA FlyBase:FBgn0026876 InParanoid:Q9XZS9
            OrthoDB:EOG4Q83CB GenomeRNAi:31072 NextBio:771801 Uniprot:Q9XZS9
        Length = 861

 Score = 118 (46.6 bits), Expect = 7.5e-13, Sum P(4) = 7.5e-13
 Identities = 26/83 (31%), Positives = 44/83 (53%)

Query:    57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
             I +L   G   G C Y+ +R A+ HA++++  Y  LL     N +   L + S+V+ DEA
Sbjct:   294 IEELANEGTACGGCSYYASRSAVEHAQLILLPYQLLLQKSARNQLGISL-KGSIVIVDEA 352

Query:   117 HNIDNVCVDSLSVRINRRTIEKA 139
             HN+ +         I+R+ +E+A
Sbjct:   353 HNLLDSVAQLHGSEISRQQLERA 375

 Score = 118 (46.6 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
 Identities = 26/83 (31%), Positives = 44/83 (53%)

Query:   712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
             I +L   G   G C Y+ +R A+ HA++++  Y  LL     N +   L + S+V+ DEA
Sbjct:   294 IEELANEGTACGGCSYYASRSAVEHAQLILLPYQLLLQKSARNQLGISL-KGSIVIVDEA 352

Query:   772 HNIDNVCVDSLSVRINRRTIEKA 794
             HN+ +         I+R+ +E+A
Sbjct:   353 HNLLDSVAQLHGSEISRQQLERA 375

 Score = 103 (41.3 bits), Expect = 7.5e-13, Sum P(4) = 7.5e-13
 Identities = 31/105 (29%), Positives = 49/105 (46%)

Query:   548 DISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVV 607
             D  V R Y  ++ + A ++P  V+    S   L   F  R    ++R    +L ++  VV
Sbjct:   609 DRLVERFYNHVVANDA-ILPF-VISNGPSGAPLSFKFAHRGSAEMLRELSMILRNLCQVV 666

Query:   608 PDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALD 652
             P GVVCF  SY YL+ V       G ++ +  RK +F E   + +
Sbjct:   667 PGGVVCFLPSYEYLDKVYKYLEQSGTLETISGRKSVFREVSGSAE 711

 Score = 93 (37.8 bits), Expect = 7.4e-12, Sum P(4) = 7.4e-12
 Identities = 40/178 (22%), Positives = 76/178 (42%)

Query:   419 RENYAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAK---GHCLLEMPSGTGKTTSL 475
             +E+ A  L     P   P E + P     ++   + L +    G  L++   GT K   L
Sbjct:   511 KEDKAEELQEQQKPTKKPVEEVAPSPIRPLLAFLETLTSNAEDGRILVDPVGGTLKYI-L 569

Query:   476 LSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELA-----RLFDYYIKH---NEEINMT 527
             L     + +    +   ++    T+   +++ E+L      RL + +  H   N+ I + 
Sbjct:   570 LDPAEQFADI-VAEARAIVIAGGTMQPTKELKEQLFTGCHDRLVERFYNHVVANDAI-LP 627

Query:   528 GLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
              ++ +      +  +F  R    ++R    +L ++  VVP GVVCF  SY YL+ V++
Sbjct:   628 FVISNGPSGAPLSFKFAHRGSAEMLRELSMILRNLCQVVPGGVVCFLPSYEYLDKVYK 685

 Score = 79 (32.9 bits), Expect = 7.5e-13, Sum P(4) = 7.5e-13
 Identities = 16/36 (44%), Positives = 20/36 (55%)

Query:   855 DYGIMIFADKRFARSDKRSKLPKWIQEYLTD-NLTN 889
             DY  +   DKRFA    R KLPKWI  ++ + N  N
Sbjct:   809 DYACVYLLDKRFADPKIRGKLPKWISRHIVEANAAN 844

 Score = 71 (30.1 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
 Identities = 26/77 (33%), Positives = 39/77 (50%)

Query:   435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHP-LDVTKL 493
             FPY   Y  Q   M EL + L+     + E P+GTGK+ +L    + ++  H  L  T++
Sbjct:    20 FPYSP-YEIQEQLMQELFQVLERGQVGIFESPTGTGKSLTLTCGALTWLARHEELVRTEM 78

Query:   494 LYCSRTVP-EIEKVVEE 509
             L   R V  E+ K+ EE
Sbjct:    79 LARIRGVEQELAKLKEE 95

 Score = 55 (24.4 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query:   492 KLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLC 538
             ++ +CSRT  ++ ++V EL +       H + +    + L SR+ LC
Sbjct:   189 QIFFCSRTHSQLAQIVAELRKT-----PHGQSVR--SISLGSRQQLC 228

 Score = 52 (23.4 bits), Expect = 7.5e-13, Sum P(4) = 7.5e-13
 Identities = 25/113 (22%), Positives = 51/113 (45%)

Query:   243 SKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAER 302
             S+ +   +  A   I   ++H + R   + +++ +   F+     K+  +RK L+     
Sbjct:   365 SEISRQQLERAKVQISGYKDHFQKRFTTKNLLKINQIIFIIRRLLKILDQRKELQ---SN 421

Query:   303 LASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNP 355
               S++RT E+T   DF + + +  L    +  T+ FA  V+  +D+    P P
Sbjct:   422 GCSMMRTYELTAEGDFFN-IDLCELLDFCAR-TR-FARKVQGRADRMEREPRP 471

 Score = 49 (22.3 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
 Identities = 22/106 (20%), Positives = 43/106 (40%)

Query:   323 VITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITS 382
             ++  L TL S+   G  I+V+P            L +  LD +     +    + +VI  
Sbjct:   540 LLAFLETLTSNAEDG-RILVDPVGG--------TLKYILLDPAEQFADIVAEARAIVIAG 590

Query:   383 GTLSPL-DMYPKILN--FQPVIMHSFSMTLARPCLLPMVRENYAMG 425
             GT+ P  ++  ++       ++   ++  +A   +LP V  N   G
Sbjct:   591 GTMQPTKELKEQLFTGCHDRLVERFYNHVVANDAILPFVISNGPSG 636


>UNIPROTKB|D4ACW5 [details] [associations]
            symbol:Brip1 "Protein Brip1" species:10116 "Rattus
            norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491 RGD:1307659
            INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 InterPro:IPR014001
            SMART:SM00487 TIGRFAMs:TIGR00604 OrthoDB:EOG4J6RQ8 IPI:IPI00372668
            Ensembl:ENSRNOT00000038829 ArrayExpress:D4ACW5 Uniprot:D4ACW5
        Length = 1170

 Score = 147 (56.8 bits), Expect = 7.9e-13, Sum P(3) = 7.9e-13
 Identities = 43/160 (26%), Positives = 78/160 (48%)

Query:    29 GENIPVCDFYEKFDAVGREAPLA--PGV---YSITKLKEMGRELGLCPYFLARQAIIHAK 83
             G++   C FY     +  +  L    G+   + I +L  +GR+L  CPY+ AR+ I  A 
Sbjct:   305 GKHGKSCYFYHGVHRISNQQTLQFLHGISKAWDIEELVSLGRKLKACPYYTARELIDSAD 364

Query:    84 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 143
             I+   Y+YLLD +I   +  +L +  VV+ DEAHNI+    ++ S  +    +  A   +
Sbjct:   365 IIFCPYNYLLDSQIRESMDIKL-KEQVVILDEAHNIEECARETASYSVTEVQLRFARDEL 423

Query:   144 QTLEGTLKEMKEADSAKLREEYARLVEGLR-DAQSARETD 182
              +L  +   +++     LR+    L+  L  ++++  E D
Sbjct:   424 DSLINS--NIRKKSHEPLRDVCYNLINWLETNSKNLVERD 461

 Score = 147 (56.8 bits), Expect = 5.1e-11, Sum P(4) = 5.1e-11
 Identities = 43/160 (26%), Positives = 78/160 (48%)

Query:   684 GENIPVCDFYEKFDAVGREAPLA--PGV---YSITKLKEMGRELGLCPYFLARQAIIHAK 738
             G++   C FY     +  +  L    G+   + I +L  +GR+L  CPY+ AR+ I  A 
Sbjct:   305 GKHGKSCYFYHGVHRISNQQTLQFLHGISKAWDIEELVSLGRKLKACPYYTARELIDSAD 364

Query:   739 IVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNI 798
             I+   Y+YLLD +I   +  +L +  VV+ DEAHNI+    ++ S  +    +  A   +
Sbjct:   365 IIFCPYNYLLDSQIRESMDIKL-KEQVVILDEAHNIEECARETASYSVTEVQLRFARDEL 423

Query:   799 QTLEGTLKEMKEADSAKLREEYARLVEGLR-DAQSARETD 837
              +L  +   +++     LR+    L+  L  ++++  E D
Sbjct:   424 DSLINS--NIRKKSHEPLRDVCYNLINWLETNSKNLVERD 461

 Score = 102 (41.0 bits), Expect = 5.1e-11, Sum P(4) = 5.1e-11
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query:   428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY---MN 484
             I  + + FP    YP Q A M  + + L++  HCLLE P+G+GK+ +LL   +A+   + 
Sbjct:    10 IGGVKIHFPCR-AYPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAWQQSLT 68

Query:   485 AHPLD 489
               P+D
Sbjct:    69 GKPVD 73

 Score = 94 (38.1 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
 Identities = 59/255 (23%), Positives = 108/255 (42%)

Query:   152 EMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPV----LPDEILQEVVPGNIRTAE 207
             +++E+   KL+E+   L E     + ARET       V      DE L  ++  NIR   
Sbjct:   377 QIRESMDIKLKEQVVILDEAHNIEECARETASYSVTEVQLRFARDE-LDSLINSNIRKKS 435

Query:   208 H--FVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLK 265
             H          I +L+T  +   +V+    +  K  S      M+   +R   +      
Sbjct:   436 HEPLRDVCYNLINWLETNSK--NLVERDYESSCKIWSGN---EMLLNLHRMGITAASFPV 490

Query:   266 TRLRVQQVVQESP---ATFLKDISSKVCIERKPLRFCAERLASLLRTLEITN---LTDFS 319
              +  +  V+Q+     +T  K+ + ++ I     +   + L  +L  L   N     D+ 
Sbjct:   491 LQKHLSAVLQKEEKVTSTHGKEEAIQIPIISASTQIMLKGLFMVLDYLFRKNSRFADDYK 550

Query:   320 SLVVITHLAT-LVSSYTKGFAIIVEPFSDK--APTVPNPVLYFCCLDSSLAIKPVFDRFQ 376
               +  T+  T  ++ + K  A++  P + K     +   VL F CL+ ++A   + D+ +
Sbjct:   551 VAIQQTYSWTNQIAIFDKN-ALLPVPKNKKHSRQKIGVNVLNFWCLNPAVAFSDINDKVR 609

Query:   377 TVVITSGTLSPLDMY 391
             T+V+TSGTLSPL  +
Sbjct:   610 TIVLTSGTLSPLKSF 624

 Score = 89 (36.4 bits), Expect = 7.9e-13, Sum P(3) = 7.9e-13
 Identities = 35/120 (29%), Positives = 58/120 (48%)

Query:   476 LSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMT----GLVL 531
             L+  VA+ + +   V  ++  S T+  ++    EL   F+  ++ N  I+ +    G V 
Sbjct:   595 LNPAVAFSDIND-KVRTIVLTSGTLSPLKSFSSELGVTFNIQLEANHVISNSQVWVGTVG 653

Query:   532 SSRK--NLCI---HSE-FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
             S  K  NLC    H+E FE +D++      G LL+ +   V  G++CF  SY  LE + E
Sbjct:   654 SGPKGRNLCATFQHTETFEFQDEV------GMLLLSVCQTVSQGILCFLPSYKLLEKLRE 707

 Score = 85 (35.0 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
 Identities = 29/99 (29%), Positives = 47/99 (47%)

Query:   551 VIRNYGQLLVDIACVVPDGV-VCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPD 609
             VI N  Q+ V      P G  +C   ++ + E+ FE +D++      G LL+ +   V  
Sbjct:   641 VISN-SQVWVGTVGSGPKGRNLC--ATFQHTET-FEFQDEV------GMLLLSVCQTVSQ 690

Query:   610 GVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
             G++CF  SY  LE +   W   G+  +L+  K +  E Q
Sbjct:   691 GILCFLPSYKLLEKLRERWIFTGLWHSLESVKTVIAEPQ 729

 Score = 76 (31.8 bits), Expect = 7.9e-13, Sum P(3) = 7.9e-13
 Identities = 31/109 (28%), Positives = 49/109 (44%)

Query:   797 NIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLA-NPVLPDEILQGKTD 855
             N++ L+  LK       +KLR        GL   +   E     A N  L    ++ K D
Sbjct:   789 NVKDLQVELKRQYNDHHSKLR--------GLLPGRQWYEIQAYRALNQAL-GRCIRHKND 839

Query:   856 YGIMIFADKRFARSDKR--SKLPKWIQEYLTDNLTNLSTEEAV-QLSKR 901
             +G +I  D RF  +  R  S L KW+++ +  + T  S  E++ + SKR
Sbjct:   840 WGALILVDDRFNNNPDRYISGLSKWVRQQIQHHSTFASALESLTEFSKR 888

 Score = 52 (23.4 bits), Expect = 5.1e-11, Sum P(4) = 5.1e-11
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query:   492 KLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             K+ + +RT  +I ++  EL R   Y       + MT  +LSSR + C+H E
Sbjct:   246 KIYFGTRTHKQIAQITREL-RKTAY-----SGVPMT--ILSSRDHTCVHPE 288

 Score = 37 (18.1 bits), Expect = 5.1e-11, Sum P(4) = 5.1e-11
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query:   878 WIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
             W    L D+  N + +  +    +W+RQ  Q
Sbjct:   840 WGALILVDDRFNNNPDRYISGLSKWVRQQIQ 870


>SGD|S000005929 [details] [associations]
            symbol:CHL1 "Probable DNA helicase" species:4932
            "Saccharomyces cerevisiae" [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA;IDA] [GO:0007059 "chromosome segregation"
            evidence=IDA] [GO:0003678 "DNA helicase activity" evidence=ISS;IMP]
            [GO:0006270 "DNA replication initiation" evidence=IMP] [GO:0007064
            "mitotic sister chromatid cohesion" evidence=IGI;IMP;IPI]
            [GO:0032508 "DNA duplex unwinding" evidence=IEA] [GO:0016817
            "hydrolase activity, acting on acid anhydrides" evidence=IEA]
            [GO:0036297 "interstrand cross-link repair" evidence=IGI]
            [GO:0045910 "negative regulation of DNA recombination"
            evidence=IGI;IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0016818 "hydrolase activity, acting on acid anhydrides, in
            phosphorus-containing anhydrides" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
            DNA helicase activity" evidence=IEA] [GO:0007535 "donor selection"
            evidence=IGI;IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0007049 "cell
            cycle" evidence=IEA] InterPro:IPR002464 InterPro:IPR006554
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
            InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
            PROSITE:PS51193 SMART:SM00488 SMART:SM00491 SGD:S000005929
            INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
            GO:GO:0006270 EMBL:Z71255 EMBL:BK006949 GO:GO:0004003 EMBL:Z48483
            EMBL:U33335 GO:GO:0003678 GO:GO:0007064 GO:GO:0045910
            eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
            HOGENOM:HOG000241266 OMA:NLGRCVV OrthoDB:EOG408RH6 EMBL:X56584
            PIR:S12499 RefSeq:NP_015317.1 ProteinModelPortal:P22516 SMR:P22516
            DIP:DIP-4044N IntAct:P22516 MINT:MINT-526050 STRING:P22516
            PaxDb:P22516 PeptideAtlas:P22516 EnsemblFungi:YPL008W GeneID:856099
            KEGG:sce:YPL008W CYGD:YPL008w GeneTree:ENSGT00530000063199
            NextBio:981143 Genevestigator:P22516 GermOnline:YPL008W
            GO:GO:0007535 GO:GO:0036297 Uniprot:P22516
        Length = 861

 Score = 133 (51.9 bits), Expect = 5.5e-09, Sum P(4) = 5.5e-09
 Identities = 50/168 (29%), Positives = 81/168 (48%)

Query:   615 FTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSLTS 674
             FTS L L S  +S+ D+ + D   K   L  + Q  ++ + V K +  + ++  C  L  
Sbjct:   246 FTSQLRLPSFPSSFRDK-VPDEKVKYLPLASKKQLCINPK-VMKWKTLEAINDACADLRH 303

Query:   675 SSVRDRHKAGENIPVCDFYEKFDAVGREAP----LAPGVYS----ITKLKEMGRELGLCP 726
             S      K G     C FY+  +   R  P    L   ++S    I  L  +G+ LG+CP
Sbjct:   304 S------KEG-----CIFYQNTNE-WRHCPDTLALRDMIFSEIQDIEDLVPLGKSLGICP 351

Query:   727 YFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNI 774
             Y+ +R+A+  A++V   Y YLL     + +   L  +S+V+ DEAHN+
Sbjct:   352 YYASREALPIAEVVTLPYQYLLSESTRSSLQINL-ENSIVIIDEAHNL 398

 Score = 127 (49.8 bits), Expect = 1.7e-12, Sum P(3) = 1.7e-12
 Identities = 24/66 (36%), Positives = 40/66 (60%)

Query:    54 VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVF 113
             +  I  L  +G+ LG+CPY+ +R+A+  A++V   Y YLL     + +   L  +S+V+ 
Sbjct:   334 IQDIEDLVPLGKSLGICPYYASREALPIAEVVTLPYQYLLSESTRSSLQINL-ENSIVII 392

Query:   114 DEAHNI 119
             DEAHN+
Sbjct:   393 DEAHNL 398

 Score = 118 (46.6 bits), Expect = 1.7e-12, Sum P(3) = 1.7e-12
 Identities = 48/173 (27%), Positives = 76/173 (43%)

Query:   559 LVDIAC--VVP-DGVVCFFTSYLYLESVFETRDDISVIRNY-GQLLVDIACVVPD--GVV 612
             +  ++C  V+P + +  + T+   LE  FE R   S++ N+  Q  VD++  VP   G+V
Sbjct:   605 ITTLSCNHVIPKENLQTYITNQPELEFTFEKRMSPSLVNNHLFQFFVDLSKAVPKKGGIV 664

Query:   613 CFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVDGRCHSL 672
              FF SY YL  V+  W        L   + +F E +D  D  S   +    + +GR  SL
Sbjct:   665 AFFPSYQYLAHVIQCWKQNDRFATLNNVRKIFYEAKDGDDILSGYSD---SVAEGR-GSL 720

Query:   673 TSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYS---ITKLKEMGREL 722
               + V  +   G N    D       VG   P  P ++S   I K K +  ++
Sbjct:   721 LLAIVGGKLSEGINFQD-DLCRAVVMVG--LPF-PNIFSGELIVKRKHLAAKI 769

 Score = 73 (30.8 bits), Expect = 5.5e-09, Sum P(4) = 5.5e-09
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query:   434 FFPYEYIYPEQYAYMVELKKAL-DAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDV 490
             + PY+  Y  Q   M  + + L + K   +LE P+GTGKT SL+   + ++  +  D+
Sbjct:    11 YHPYKP-YDIQVQLMETVYRVLSEGKKIAILESPTGTGKTLSLICATMTWLRMNKADI 67

 Score = 64 (27.6 bits), Expect = 4.6e-07, Sum P(3) = 4.6e-07
 Identities = 27/121 (22%), Positives = 54/121 (44%)

Query:   354 NPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPC 413
             N  + +  L+ S   + + ++ + VV+  GT+ P+  +  + N  P +      TL+   
Sbjct:   555 NYSIKYMLLEPSKPFESILNQAKCVVLAGGTMEPMSEF--LSNLLPEVPSEDITTLSCNH 612

Query:   414 LLPMVRENYAMGLMIDDLPVF-FPYE------YIYPEQYAYMVELKKALDAKGHCLLEMP 466
             ++P  +EN  +   I + P   F +E       +    + + V+L KA+  KG  +   P
Sbjct:   613 VIP--KEN--LQTYITNQPELEFTFEKRMSPSLVNNHLFQFFVDLSKAVPKKGGIVAFFP 668

Query:   467 S 467
             S
Sbjct:   669 S 669

 Score = 60 (26.2 bits), Expect = 1.7e-12, Sum P(3) = 1.7e-12
 Identities = 12/48 (25%), Positives = 25/48 (52%)

Query:   855 DYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRW 902
             DY  +   D R+ R + R KL +W+Q+ +    T   T + +  ++++
Sbjct:   808 DYANIYLLDVRYNRPNFRKKLSRWVQDSINSEHT---THQVISSTRKF 852

 Score = 53 (23.7 bits), Expect = 4.1e-08, Sum P(4) = 4.1e-08
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query:   484 NAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEI---NMTGLVLSSRKNLCIH 540
             N +P+   K+ Y SRT  ++ +   +L RL  +     +++    +  L L+S+K LCI+
Sbjct:   227 NQNPV---KIYYASRTYSQLGQFTSQL-RLPSFPSSFRDKVPDEKVKYLPLASKKQLCIN 282

 Score = 46 (21.3 bits), Expect = 5.5e-09, Sum P(4) = 5.5e-09
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query:   504 EKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLC 538
             + V++E   L + Y KH  EIN T       K +C
Sbjct:    99 KSVLQEKVDLLNDYEKHLNEINTTSC--KQLKTMC 131


>UNIPROTKB|E1BL06 [details] [associations]
            symbol:E1BL06 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0030496 "midbody" evidence=IEA] [GO:0007062 "sister
            chromatid cohesion" evidence=IEA] [GO:0000922 "spindle pole"
            evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
            DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR014013 InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307
            PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
            GO:GO:0003677 GO:GO:0000790 GO:GO:0004003 GO:GO:0030496
            GO:GO:0000922 InterPro:IPR014001 SMART:SM00487
            PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
            GeneTree:ENSGT00530000063199 GO:GO:0007062 EMBL:DAAA02014574
            EMBL:DAAA02014575 EMBL:DAAA02014576 EMBL:DAAA02014577
            IPI:IPI00707607 Ensembl:ENSBTAT00000009329 Uniprot:E1BL06
        Length = 913

 Score = 131 (51.2 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
 Identities = 58/217 (26%), Positives = 95/217 (43%)

Query:   680 RHKAGENIPVCDFY--EKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHA 737
             R +  E    C FY  E+   + R+  L  GV  + +L  +G E   CPY+  R AI  A
Sbjct:   303 RRRRQEPRATCPFYSYERLQLL-RDEVLV-GVKDVEQLVALGEEAQACPYYGGRFAIPAA 360

Query:   738 KIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN 797
             ++VV  Y  LL           L +  VVV DEAHN+ +   +  SV +    + +A   
Sbjct:   361 QLVVLPYQMLLHAPTRQAAGIRL-QGQVVVIDEAHNLIDTITNIHSVEVRGSQLCQAHSQ 419

Query:   798 I-QTLEGTLKEMKEADSAKLR------EEYARLVEG-LR---DAQSARETDVVLANPVLP 846
             + Q  E   K +K  +   ++      E++  ++ G ++   + QS  +    L    + 
Sbjct:   420 LLQYTERYGKRLKAKNLMYIKQLLYLLEKFVAVLGGNIKQNPNTQSLSQAGTELKT--IN 477

Query:   847 DEILQGKTDYGIMIFADKRFARSDKRS-KLPKWIQEY 882
             D + Q K D  I +F  +R+    K S KL  + + Y
Sbjct:   478 DFLFQSKID-NINLFKVRRYCEKSKISRKLLGFTERY 513

 Score = 124 (48.7 bits), Expect = 1.8e-12, Sum P(4) = 1.8e-12
 Identities = 31/99 (31%), Positives = 50/99 (50%)

Query:   559 LVDIAC---VVPDG----VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
             +V+ +C   + PD     ++C   S   L+  ++ R    ++   G++L ++  VVP GV
Sbjct:   643 VVEFSCGHVIPPDHILPLIICSGPSNQMLDFTYQKRGLPQMMDETGRILCNLCNVVPGGV 702

Query:   612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
             VCFF SY Y   V   W   G++  L  RK +F E + A
Sbjct:   703 VCFFPSYEYQHQVCTHWEKSGLLARLTIRKKIFQEPRKA 741

 Score = 124 (48.7 bits), Expect = 1.8e-12, Sum P(4) = 1.8e-12
 Identities = 39/110 (35%), Positives = 53/110 (48%)

Query:    25 RHKAGENIPVCDFY--EKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHA 82
             R +  E    C FY  E+   + R+  L  GV  + +L  +G E   CPY+  R AI  A
Sbjct:   303 RRRRQEPRATCPFYSYERLQLL-RDEVLV-GVKDVEQLVALGEEAQACPYYGGRFAIPAA 360

Query:    83 KIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHN-IDNVC-VDSLSVR 130
             ++VV  Y  LL           L +  VVV DEAHN ID +  + S+ VR
Sbjct:   361 QLVVLPYQMLLHAPTRQAAGIRL-QGQVVVIDEAHNLIDTITNIHSVEVR 409

 Score = 83 (34.3 bits), Expect = 2.0e-08, Sum P(4) = 2.0e-08
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query:   529 LVLSSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
             ++ S   N  +   ++ R    ++   G++L ++  VVP GVVCFF SY Y   V
Sbjct:   661 IICSGPSNQMLDFTYQKRGLPQMMDETGRILCNLCNVVPGGVVCFFPSYEYQHQV 715

 Score = 70 (29.7 bits), Expect = 1.7e-09, Sum P(4) = 1.7e-09
 Identities = 16/45 (35%), Positives = 26/45 (57%)

Query:   433 VFFPYEYI-YPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLL 476
             + FP+ +  Y  Q  +M  L + L+A    + E P+GTGK+ SL+
Sbjct:    11 IHFPFPFTPYAIQKDFMAALYQVLEAGKIGIFESPTGTGKSLSLI 55

 Score = 67 (28.6 bits), Expect = 1.7e-09, Sum P(4) = 1.7e-09
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             VTK+ YCSRT  ++ + V E+ +         ++  +  L   SR+NLC++ +
Sbjct:   223 VTKIYYCSRTHSQLAQFVHEVQKS-----PFGQDTRLVSL--GSRQNLCVNGD 268

 Score = 58 (25.5 bits), Expect = 1.8e-12, Sum P(4) = 1.8e-12
 Identities = 9/32 (28%), Positives = 21/32 (65%)

Query:   850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQE 881
             ++ + D+  ++  D+R+A    ++KLP WI++
Sbjct:   856 IRHQKDFASIVLLDQRYASPAIQAKLPAWIRD 887

 Score = 43 (20.2 bits), Expect = 1.8e-12, Sum P(4) = 1.8e-12
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query:   357 LYFCCLDSSLAIKPVFDRFQTVVITSGTLSPL-DMYPKIL 395
             L F  L+ ++    V    + VVI  GT+ P+ D   ++L
Sbjct:   594 LKFLLLNPAVHFAQVVKECRAVVIAGGTMQPVSDFREQLL 633

 Score = 37 (18.1 bits), Expect = 0.00055, Sum P(4) = 0.00055
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query:     5 RDGKIVDGRCHSLTSSSVR 23
             +DG+++  R  SL+ SS++
Sbjct:   577 QDGRVILSRQGSLSQSSLK 595

 Score = 37 (18.1 bits), Expect = 0.00084, Sum P(3) = 0.00084
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query:   660 RDGKIVDGRCHSLTSSSVR 678
             +DG+++  R  SL+ SS++
Sbjct:   577 QDGRVILSRQGSLSQSSLK 595


>RGD|1306675 [details] [associations]
            symbol:Ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11"
            species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
            evidence=ISO] [GO:0000922 "spindle pole" evidence=ISO] [GO:0003677
            "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0004386 "helicase activity"
            evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA;ISO] [GO:0007062 "sister chromatid cohesion"
            evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
            evidence=ISO] [GO:0030496 "midbody" evidence=ISO]
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR014013 InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307
            PROSITE:PS51193 SMART:SM00488 SMART:SM00491 RGD:1306675
            INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0003677 GO:GO:0000790
            GO:GO:0004003 GO:GO:0030496 GO:GO:0000922 PANTHER:PTHR11472:SF5
            TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199 GO:GO:0007062
            OrthoDB:EOG4B5P4M IPI:IPI00765140 Ensembl:ENSRNOT00000016536
            UCSC:RGD:1306675 Uniprot:D3ZT96
        Length = 882

 Score = 132 (51.5 bits), Expect = 3.4e-12, Sum P(4) = 3.4e-12
 Identities = 32/99 (32%), Positives = 52/99 (52%)

Query:   559 LVDIAC---VVPDGV----VCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPDGV 611
             +V+ +C   + PD +    +C   S   LE  ++ R+   ++   G++L ++  VVP G+
Sbjct:   618 VVEFSCGHVIPPDNILPLIICSGPSNQQLEFTYQRRELPQMMEETGRILCNLCNVVPGGM 677

Query:   612 VCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDA 650
             VCF  SY YL  V A W   G++  L  RK +F E + A
Sbjct:   678 VCFLPSYEYLRQVHAHWDKTGLLARLSVRKKIFQEPKRA 716

 Score = 86 (35.3 bits), Expect = 3.4e-12, Sum P(4) = 3.4e-12
 Identities = 19/45 (42%), Positives = 28/45 (62%)

Query:   433 VFFPYEYI-YPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLL 476
             + FP+ +  YP Q  +M EL K L+A    + E P+GTGK+ SL+
Sbjct:    11 IHFPFPFPPYPIQKDFMAELYKVLEAGKIGIFESPTGTGKSLSLI 55

 Score = 85 (35.0 bits), Expect = 5.8e-05, Sum P(3) = 5.8e-05
 Identities = 22/77 (28%), Positives = 40/77 (51%)

Query:   509 ELARLFDYYIKHN-EEINMTGLVL-SSRKNLCIHSEFETRDDISVIRNYGQLLVDIACVV 566
             E +R+ ++   H     N+  L++ S   N  +   ++ R+   ++   G++L ++  VV
Sbjct:   614 EASRVVEFSCGHVIPPDNILPLIICSGPSNQQLEFTYQRRELPQMMEETGRILCNLCNVV 673

Query:   567 PDGVVCFFTSYLYLESV 583
             P G+VCF  SY YL  V
Sbjct:   674 PGGMVCFLPSYEYLRQV 690

 Score = 66 (28.3 bits), Expect = 3.4e-12, Sum P(4) = 3.4e-12
 Identities = 15/65 (23%), Positives = 35/65 (53%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDI 549
             +TK+ YCSRT  ++ + V E+ +         +E  +  L   SR++LC++ + ++   +
Sbjct:   198 ITKIYYCSRTHSQLAQFVREVQKS-----PFGKETRLVSL--GSRQSLCVNEDVKSLGSV 250

Query:   550 SVIRN 554
              ++ +
Sbjct:   251 HLMND 255

 Score = 61 (26.5 bits), Expect = 3.4e-12, Sum P(4) = 3.4e-12
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query:   850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQE 881
             ++ + D+  ++  D R+AR    +KLP WI++
Sbjct:   823 IRHQKDFASIVLLDHRYARPSILAKLPAWIRD 854

 Score = 57 (25.1 bits), Expect = 8.8e-07, Sum P(4) = 8.8e-07
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query:    35 CDFY--EKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVV 86
             C FY  E+ + +  E  L   V  + +L  +G+E   CPY+ +R AI  A+ V+
Sbjct:   286 CPFYNHEQMELLRDEILLE--VKDMEQLVALGKEAQACPYYGSRFAIPAAQQVL 337

 Score = 57 (25.1 bits), Expect = 0.00013, Sum P(4) = 0.00013
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query:   690 CDFY--EKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVV 741
             C FY  E+ + +  E  L   V  + +L  +G+E   CPY+ +R AI  A+ V+
Sbjct:   286 CPFYNHEQMELLRDEILLE--VKDMEQLVALGKEAQACPYYGSRFAIPAAQQVL 337

 Score = 40 (19.1 bits), Expect = 8.8e-07, Sum P(4) = 8.8e-07
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query:   357 LYFCCLDSSLAIKPVFDRFQTVVITSGTLSPL-DMYPKIL 395
             L F  L+ ++    V    + +VI  GT+ P+ D   ++L
Sbjct:   569 LKFLLLNPAVHFAQVVKECRALVIAGGTMQPVSDFREQLL 608


>ZFIN|ZDB-GENE-081107-11 [details] [associations]
            symbol:brip1 "BRCA1 interacting protein C-terminal
            helicase 1" species:7955 "Danio rerio" [GO:0016817 "hydrolase
            activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0016818 "hydrolase activity, acting on acid anhydrides, in
            phosphorus-containing anhydrides" evidence=IEA] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=IEA] [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
            PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
            ZFIN:ZDB-GENE-081107-11 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
            GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 eggNOG:COG1199
            TIGRFAMs:TIGR00604 CTD:83990 HOGENOM:HOG000068083
            HOVERGEN:HBG081519 KO:K15362 OrthoDB:EOG4J6RQ8 EMBL:EF088194
            IPI:IPI00877443 RefSeq:NP_001103766.1 UniGene:Dr.85128
            ProteinModelPortal:A8QLH7 STRING:A8QLH7 GeneID:794038
            KEGG:dre:794038 NextBio:20931680 ArrayExpress:A8QLH7 Uniprot:A8QLH7
        Length = 1217

 Score = 134 (52.2 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
 Identities = 30/79 (37%), Positives = 46/79 (58%)

Query:   710 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 769
             + I +L  +G +L  C Y+ AR+ +  A IV   Y+YLLDP I   +   L +  +VV D
Sbjct:   363 WDIEELVRLGGKLRSCAYYAARELMQEACIVFCPYNYLLDPLIRESMEINL-KEQIVVLD 421

Query:   770 EAHNIDNVCVDSLSVRINR 788
             EAHNI++   +S S  +N+
Sbjct:   422 EAHNIEDCARESASFTLNQ 440

 Score = 134 (52.2 bits), Expect = 1.8e-11, Sum P(4) = 1.8e-11
 Identities = 30/79 (37%), Positives = 46/79 (58%)

Query:    55 YSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 114
             + I +L  +G +L  C Y+ AR+ +  A IV   Y+YLLDP I   +   L +  +VV D
Sbjct:   363 WDIEELVRLGGKLRSCAYYAARELMQEACIVFCPYNYLLDPLIRESMEINL-KEQIVVLD 421

Query:   115 EAHNIDNVCVDSLSVRINR 133
             EAHNI++   +S S  +N+
Sbjct:   422 EAHNIEDCARESASFTLNQ 440

 Score = 98 (39.6 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query:   428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
             I  + + FP +  YP Q A M  + + L+   HCLLE P+G+GK+ +LL   +A+  A
Sbjct:    10 IGGVKINFPCK-AYPSQLAMMNSIIRGLNNGQHCLLESPTGSGKSLALLCSALAWQQA 66

 Score = 83 (34.3 bits), Expect = 1.8e-11, Sum P(4) = 1.8e-11
 Identities = 27/106 (25%), Positives = 51/106 (48%)

Query:   542 EFETRDDISVIRNYGQLLVDIACVVPDG-VVCFFTSYLYLESVFETRDDISVIRNYGQLL 600
             +F  + + + + N  Q+ V      P G  +C   ++ + E+ F  +D++      G LL
Sbjct:   659 KFSIQLEANHVINKSQVWVGTIGAGPQGRKLC--ATFQHAET-FAFQDEV------GALL 709

Query:   601 VDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIE 646
             + +   V  GV+CF  SY  L+ +   W + G+ D L++ K +  E
Sbjct:   710 LKVCHTVSRGVLCFLPSYKMLDKLRDRWTNTGLWDKLEECKTVITE 755

 Score = 73 (30.8 bits), Expect = 1.8e-11, Sum P(4) = 1.8e-11
 Identities = 16/53 (30%), Positives = 31/53 (58%)

Query:   346 SDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQ 398
             S++  T+ +  L F CL+ ++A   +    +++V+TSGTLSP+  +   L  +
Sbjct:   608 SNRTKTLVH-TLSFWCLNPAVAFSDLSSTVRSIVLTSGTLSPMGSFSSELGIK 659

 Score = 60 (26.2 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             + K+ + +RT  +I ++  EL R   Y       + MT  +LSSR + C+H E
Sbjct:   271 IPKIFFGTRTHKQITQIARELKRTL-Y-----STVPMT--ILSSRDHTCVHPE 315

 Score = 54 (24.1 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
 Identities = 21/109 (19%), Positives = 48/109 (44%)

Query:   805 LKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLA-NPVLPDEILQGKTDYGIMIFAD 863
             +K+++     K  +++A+   GL       E     A N  L    ++ + D+G +I  D
Sbjct:   822 IKDLQVELKMKYNDKHAKS-RGLLPGGRWYEIQAYRALNQAL-GRCIRHRNDWGALILVD 879

Query:   864 KRFARSDKR--SKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPF 910
              RF  +  +  + L KW+++ +  + T     ++++   +  R   + F
Sbjct:   880 DRFRTNPNKYITGLSKWVRQLVRHHDTFTGAMQSLESFSQGQRGAVETF 928


>TAIR|locus:2017894 [details] [associations]
            symbol:AT1G79890 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0006139
            "nucleobase-containing compound metabolic process" evidence=IEA]
            [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
            [GO:0016817 "hydrolase activity, acting on acid anhydrides"
            evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
            anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0006261
            "DNA-dependent DNA replication" evidence=RCA] [GO:0006310 "DNA
            recombination" evidence=RCA] [GO:0007059 "chromosome segregation"
            evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0007129
            "synapsis" evidence=RCA] [GO:0007131 "reciprocal meiotic
            recombination" evidence=RCA] [GO:0010332 "response to gamma
            radiation" evidence=RCA] [GO:0032204 "regulation of telomere
            maintenance" evidence=RCA] [GO:0033044 "regulation of chromosome
            organization" evidence=RCA] [GO:0042138 "meiotic DNA double-strand
            break formation" evidence=RCA] [GO:0043247 "telomere maintenance in
            response to DNA damage" evidence=RCA] InterPro:IPR002464
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
            InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
            PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
            GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 EMBL:AC011717
            UniGene:At.18069 eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5
            TIGRFAMs:TIGR00604 HOGENOM:HOG000241266 OMA:NLGRCVV IPI:IPI00530666
            PIR:A96830 RefSeq:NP_178107.1 UniGene:At.66890
            ProteinModelPortal:Q9CA92 SMR:Q9CA92 STRING:Q9CA92 PaxDb:Q9CA92
            PRIDE:Q9CA92 EnsemblPlants:AT1G79890.1 GeneID:844328
            KEGG:ath:AT1G79890 TAIR:At1g79890 InParanoid:Q9CA92
            PhylomeDB:Q9CA92 ProtClustDB:CLSN2681868 Genevestigator:Q9CA92
            Uniprot:Q9CA92
        Length = 882

 Score = 118 (46.6 bits), Expect = 4.1e-11, Sum P(4) = 4.1e-11
 Identities = 22/74 (29%), Positives = 44/74 (59%)

Query:   586 TRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFI 645
             +R  I +I+  G L+ ++  VVP+G++ FF+S+ Y   V  +W + GI+  + K+K +F 
Sbjct:   620 SRSSIGMIQELGLLMSNLVAVVPEGIIVFFSSFEYETQVHTAWSNSGILRRIVKKKRVFR 679

Query:   646 ETQDALDSRSVSKE 659
             E +   +  +V ++
Sbjct:   680 EPRKNTEVEAVLRD 693

 Score = 111 (44.1 bits), Expect = 4.1e-11, Sum P(4) = 4.1e-11
 Identities = 27/104 (25%), Positives = 52/104 (50%)

Query:    57 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 116
             I  L ++GRE+  CPY+ +R+    A +V+  Y  LL       +   L ++SVV+ DEA
Sbjct:   297 IEDLVQLGREMRTCPYYGSRRMAPAADLVILPYQSLLSKSSRESLGLSL-KNSVVIIDEA 355

Query:   117 HNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAK 160
             HN+ +  +     ++    +E    +I++  G  + +  A + +
Sbjct:   356 HNLADTLLSMHDAKLTVSQLEDIHCSIESYLGRFQNLLGAGNRR 399

 Score = 111 (44.1 bits), Expect = 2.6e-08, Sum P(4) = 2.6e-08
 Identities = 27/104 (25%), Positives = 52/104 (50%)

Query:   712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
             I  L ++GRE+  CPY+ +R+    A +V+  Y  LL       +   L ++SVV+ DEA
Sbjct:   297 IEDLVQLGREMRTCPYYGSRRMAPAADLVILPYQSLLSKSSRESLGLSL-KNSVVIIDEA 355

Query:   772 HNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAK 815
             HN+ +  +     ++    +E    +I++  G  + +  A + +
Sbjct:   356 HNLADTLLSMHDAKLTVSQLEDIHCSIESYLGRFQNLLGAGNRR 399

 Score = 82 (33.9 bits), Expect = 1.5e-07, Sum P(4) = 1.5e-07
 Identities = 15/50 (30%), Positives = 29/50 (58%)

Query:   545 TRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIR 594
             +R  I +I+  G L+ ++  VVP+G++ FF+S+ Y   V     +  ++R
Sbjct:   620 SRSSIGMIQELGLLMSNLVAVVPEGIIVFFSSFEYETQVHTAWSNSGILR 669

 Score = 78 (32.5 bits), Expect = 4.8e-09, Sum P(4) = 4.8e-09
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query:   428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLL 476
             I + P F PY+  Y  Q  +M  L + LD  G  +LE P+GTGK+ S++
Sbjct:     4 IREFPAF-PYKP-YSIQIDFMNALYQFLDKGGVSMLESPTGTGKSLSII 50

 Score = 66 (28.3 bits), Expect = 4.8e-09, Sum P(4) = 4.8e-09
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query:   492 KLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             K+ +CSRT  ++ + V+EL +    + K      +  + L SRKNLCI+ +
Sbjct:   184 KVFFCSRTHSQLSQFVKELRKTV--FAK-----KLKVVCLGSRKNLCINED 227

 Score = 54 (24.1 bits), Expect = 4.1e-11, Sum P(4) = 4.1e-11
 Identities = 22/94 (23%), Positives = 40/94 (42%)

Query:   301 ERLASLLRT-----LEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNP 355
             ER+A++L+       E++ LT F +   +  L  L ++   G  II+   S         
Sbjct:   481 ERVAAMLQKDPVAHEEMSKLTSFRAFSDM--LVALTNNNGDG-RIIISRTSSSTSGQHGG 537

Query:   356 VLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLD 389
              + +  L  +     V D    V++  GTL P++
Sbjct:   538 YIKYVMLTGAKLFSEVVDEAHAVILAGGTLQPIE 571

 Score = 52 (23.4 bits), Expect = 4.1e-11, Sum P(4) = 4.1e-11
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query:   864 KRFARSDKRSKLPKWIQEYL 883
             KR + S   +KLPKWI++ L
Sbjct:   831 KRTSHSHPSNKLPKWIKDRL 850


>UNIPROTKB|B4I0K4 [details] [associations]
            symbol:GM12432 "Regulator of telomere elongation helicase 1
            homolog" species:7238 "Drosophila sechellia" [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
            "ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0010569 "regulation of double-strand break repair via
            homologous recombination" evidence=ISS] InterPro:IPR006554
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
            GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
            GO:GO:0051539 GO:GO:0004003 EMBL:CH480819 GO:GO:0010569
            TIGRFAMs:TIGR00604 KO:K11136 OrthoDB:EOG4S4MX7
            RefSeq:XP_002036876.1 EnsemblMetazoa:FBtr0195417 GeneID:6612367
            KEGG:dse:Dsec_GM12432 FlyBase:FBgn0167369 Uniprot:B4I0K4
        Length = 966

 Score = 114 (45.2 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
 Identities = 24/80 (30%), Positives = 44/80 (55%)

Query:   580 LESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQK 639
             L S +  RD+   + + GQ ++++A +VPDG++ FF SY  L   V +W   G+  ++  
Sbjct:   507 LISNYANRDNPKYVSSLGQTILNVARIVPDGLLVFFPSYPMLNKCVDAWQASGLWADISC 566

Query:   640 RKLLFIETQDALDSRSVSKE 659
             +K +F+E +      S  +E
Sbjct:   567 KKPIFLEPRSKDQFTSTMEE 586

 Score = 105 (42.0 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
 Identities = 27/71 (38%), Positives = 41/71 (57%)

Query:   427 MIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA- 485
             +I  +PV FP+E  YP Q AYM ++   L    + +LE P+GTGKT SLL   +A++   
Sbjct:     5 LIAGIPVHFPFEP-YPVQRAYMEKVIHCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTR 63

Query:   486 ---HPLDVTKL 493
                H + + K+
Sbjct:    64 QSEHQMQMVKM 74

 Score = 89 (36.4 bits), Expect = 8.9e-11, Sum P(5) = 8.9e-11
 Identities = 37/165 (22%), Positives = 71/165 (43%)

Query:    91 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLE--- 147
             Y    ++A     EL  +++V+ DEAHNI+ +C +  SV+I    +   + +I  +    
Sbjct:   211 YFASRELARANKIELG-NTIVILDEAHNIEKICEEYASVQIKSSDVAMTIEDITHIRQVF 269

Query:   148 --GTLKEMKEADSAK--LREEYARLVEGLRDAQSARETDVVLANPV----LPDEILQEVV 199
               G  ++M   D  K    ++   L E L + + A +  VV+ N V     P  ++ E++
Sbjct:   270 ASGESQDMA-GDEPKDFTLDDLTLLKEMLLELEKAIDA-VVVDNAVDGTTFPASMMYELL 327

Query:   200 -PGNIR--TAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDI 241
                N         +  L + ++YL    +   + +    T L D+
Sbjct:   328 GKANFTYGNVASIISLLDKLVQYLLVASQQMSIRKGGTFTLLSDL 372

 Score = 85 (35.0 bits), Expect = 5.4e-08, Sum P(3) = 5.4e-08
 Identities = 22/94 (23%), Positives = 50/94 (53%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLS------SRKNLCIHSEF 543
             V  ++  S T+  ++ ++ ELA     ++++   ++ + + +        R+ L   S +
Sbjct:   454 VRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQSQVYVKIIGTGPDRQQLI--SNY 511

Query:   544 ETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSY 577
               RD+   + + GQ ++++A +VPDG++ FF SY
Sbjct:   512 ANRDNPKYVSSLGQTILNVARIVPDGLLVFFPSY 545

 Score = 80 (33.2 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
 Identities = 33/101 (32%), Positives = 45/101 (44%)

Query:   443 EQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN-AHPLDVTKLLYCSRTVP 501
             E    MV+++KA D  G        G G     LS +   M  A+   V K++Y SRT  
Sbjct:    66 EHQMQMVKMEKA-DFSG-------IGGGAPGGDLSELAKTMGRANNWGVPKVIYASRTHS 117

Query:   502 EIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             ++ + + EL        K     NM  +VL SR  LCIH E
Sbjct:   118 QLTQAMREL--------KRTAYANMRSVVLGSRDQLCIHPE 150

 Score = 80 (33.2 bits), Expect = 6.1e-07, Sum P(4) = 6.1e-07
 Identities = 18/69 (26%), Positives = 33/69 (47%)

Query:   746 YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTL 805
             Y    ++A     EL  +++V+ DEAHNI+ +C +  SV+I    +   + +I  +    
Sbjct:   211 YFASRELARANKIELG-NTIVILDEAHNIEKICEEYASVQIKSSDVAMTIEDITHIRQVF 269

Query:   806 KEMKEADSA 814
                +  D A
Sbjct:   270 ASGESQDMA 278

 Score = 73 (30.8 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTD 885
             +++ + DYG ++  D RF  + +  +L KWI+ +L D
Sbjct:   675 VIRHRNDYGAILLCDSRFKDASQVQQLSKWIRGHLGD 711

 Score = 73 (30.8 bits), Expect = 8.5e-07, Sum P(3) = 8.5e-07
 Identities = 23/91 (25%), Positives = 44/91 (48%)

Query:   690 CDFYEKFDAVGREAPL-APGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLL 748
             C F  + ++      L  P +  I  L ++G+ L +CPYF +R+     KI + +   +L
Sbjct:   173 CSFQMRVESRKDHPDLRGPTIMDIEDLVKVGQRLKICPYFASRELARANKIELGNTIVIL 232

Query:   749 DPKIANV--VSKELARSSVVVFDEAHNIDNV 777
             D +  N+  + +E A   +   D A  I+++
Sbjct:   233 D-EAHNIEKICEEYASVQIKSSDVAMTIEDI 262

 Score = 61 (26.5 bits), Expect = 8.9e-11, Sum P(5) = 8.9e-11
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query:   356 VLYFCCLDSSLAIKPVFD-RFQTVVITSGTLSPLDMYPKILNFQ-PVIMH 403
             ++ F C +    ++ + + + ++V++TSGTL+PL   P I     PV  H
Sbjct:   434 IINFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLK--PLIAELAIPVAQH 481

 Score = 42 (19.8 bits), Expect = 0.00033, Sum P(4) = 0.00033
 Identities = 22/84 (26%), Positives = 36/84 (42%)

Query:   432 PVFFPYEYIYPEQYAY--MVELKKALDAKGHCLL----EMPSGTGKTTSLLSLIVAYMNA 485
             P    YE +    + Y  +  +   LD     LL    +M    G T +LLS ++  + A
Sbjct:   319 PASMMYELLGKANFTYGNVASIISLLDKLVQYLLVASQQMSIRKGGTFTLLSDLLTIVFA 378

Query:   486 HPLDVTKLLYCSRTVPEIEKVVEE 509
             +  DV   +Y S    ++  +VEE
Sbjct:   379 NKEDVMSKVYASF---KVHVLVEE 399

 Score = 37 (18.1 bits), Expect = 8.9e-11, Sum P(5) = 8.9e-11
 Identities = 5/21 (23%), Positives = 11/21 (52%)

Query:    18 TSSSVRDRHKAGENIPVCDFY 38
             T   + D  K G+ + +C ++
Sbjct:   192 TIMDIEDLVKVGQRLKICPYF 212

 Score = 37 (18.1 bits), Expect = 6.1e-07, Sum P(4) = 6.1e-07
 Identities = 5/21 (23%), Positives = 11/21 (52%)

Query:   673 TSSSVRDRHKAGENIPVCDFY 693
             T   + D  K G+ + +C ++
Sbjct:   192 TIMDIEDLVKVGQRLKICPYF 212


>RGD|1307659 [details] [associations]
            symbol:Brip1 "BRCA1 interacting protein C-terminal helicase 1"
            species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006357 "regulation
            of transcription from RNA polymerase II promoter" evidence=ISO]
            [GO:0008285 "negative regulation of cell proliferation"
            evidence=IDA] [GO:0031965 "nuclear membrane" evidence=ISO]
            [GO:0071295 "cellular response to vitamin" evidence=IEP]
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491 RGD:1307659
            INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0008285 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
            IPI:IPI00781914 Ensembl:ENSRNOT00000055817 ArrayExpress:D4AD12
            GO:GO:0071295 Uniprot:D4AD12
        Length = 818

 Score = 102 (41.0 bits), Expect = 3.4e-09, Sum P(4) = 3.4e-09
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query:   428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAY---MN 484
             I  + + FP    YP Q A M  + + L++  HCLLE P+G+GK+ +LL   +A+   + 
Sbjct:    10 IGGVKIHFPCR-AYPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAWQQSLT 68

Query:   485 AHPLD 489
               P+D
Sbjct:    69 GKPVD 73

 Score = 101 (40.6 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
 Identities = 70/305 (22%), Positives = 130/305 (42%)

Query:   101 VSKELARS--SVVVFDEAHNIDNVCVDSLSV-RINRRTIEKAVGNIQTLEGTLKEMKEAD 157
             +++EL ++  S V      + D+ CV    V   NR   EK +   + L+G   ++K  +
Sbjct:   256 ITRELRKTAYSGVPMTILSSRDHTCVHPEVVGNFNRN--EKCM---ELLDGKHMDIKLKE 310

Query:   158 SAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEH--FVGFLKR 215
                + +E   + E  R+  S   T+V L      DE L  ++  NIR   H         
Sbjct:   311 QVVILDEAHNIEECARETASYSVTEVQLR--FARDE-LDSLINSNIRKKSHEPLRDVCYN 367

Query:   216 FIEYLKTRLRVQQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQ 275
              I +L+T  +   +V+    +  K  S      M+   +R   +       +  +  V+Q
Sbjct:   368 LINWLETNSK--NLVERDYESSCKIWSGN---EMLLNLHRMGITAASFPVLQKHLSAVLQ 422

Query:   276 ESP---ATFLKDISSKVCIERKPLRFCAERLASLLRTLEITN---LTDFSSLVVITHLAT 329
             +     +T  K+ + ++ I     +   + L  +L  L   N     D+   +  T+  T
Sbjct:   423 KEEKVTSTHGKEEAIQIPIISASTQIMLKGLFMVLDYLFRKNSRFADDYKVAIQQTYSWT 482

Query:   330 -LVSSYTKGFAIIVEPFSDK--APTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLS 386
               ++ + K  A++  P + K     +   VL F CL+ ++A   + D+ +T+V+TSGTLS
Sbjct:   483 NQIAIFDKN-ALLPVPKNKKHSRQKIGVNVLNFWCLNPAVAFSDINDKVRTIVLTSGTLS 541

Query:   387 PLDMY 391
             PL  +
Sbjct:   542 PLKSF 546

 Score = 89 (36.4 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
 Identities = 35/120 (29%), Positives = 58/120 (48%)

Query:   476 LSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMT----GLVL 531
             L+  VA+ + +   V  ++  S T+  ++    EL   F+  ++ N  I+ +    G V 
Sbjct:   517 LNPAVAFSDIND-KVRTIVLTSGTLSPLKSFSSELGVTFNIQLEANHVISNSQVWVGTVG 575

Query:   532 SSRK--NLCI---HSE-FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
             S  K  NLC    H+E FE +D++      G LL+ +   V  G++CF  SY  LE + E
Sbjct:   576 SGPKGRNLCATFQHTETFEFQDEV------GMLLLSVCQTVSQGILCFLPSYKLLEKLRE 629

 Score = 85 (35.0 bits), Expect = 3.4e-09, Sum P(4) = 3.4e-09
 Identities = 29/99 (29%), Positives = 47/99 (47%)

Query:   551 VIRNYGQLLVDIACVVPDGV-VCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPD 609
             VI N  Q+ V      P G  +C   ++ + E+ FE +D++      G LL+ +   V  
Sbjct:   563 VISN-SQVWVGTVGSGPKGRNLC--ATFQHTET-FEFQDEV------GMLLLSVCQTVSQ 612

Query:   610 GVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
             G++CF  SY  LE +   W   G+  +L+  K +  E Q
Sbjct:   613 GILCFLPSYKLLEKLRERWIFTGLWHSLESVKTVIAEPQ 651

 Score = 76 (31.8 bits), Expect = 3.4e-09, Sum P(4) = 3.4e-09
 Identities = 31/109 (28%), Positives = 49/109 (44%)

Query:   797 NIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLA-NPVLPDEILQGKTD 855
             N++ L+  LK       +KLR        GL   +   E     A N  L    ++ K D
Sbjct:   711 NVKDLQVELKRQYNDHHSKLR--------GLLPGRQWYEIQAYRALNQAL-GRCIRHKND 761

Query:   856 YGIMIFADKRFARSDKR--SKLPKWIQEYLTDNLTNLSTEEAV-QLSKR 901
             +G +I  D RF  +  R  S L KW+++ +  + T  S  E++ + SKR
Sbjct:   762 WGALILVDDRFNNNPDRYISGLSKWVRQQIQHHSTFASALESLTEFSKR 810

 Score = 52 (23.4 bits), Expect = 3.4e-09, Sum P(4) = 3.4e-09
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query:   492 KLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             K+ + +RT  +I ++  EL R   Y       + MT  +LSSR + C+H E
Sbjct:   242 KIYFGTRTHKQIAQITREL-RKTAY-----SGVPMT--ILSSRDHTCVHPE 284

 Score = 37 (18.1 bits), Expect = 2.1e-05, Sum P(4) = 2.1e-05
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query:   878 WIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQ 908
             W    L D+  N + +  +    +W+RQ  Q
Sbjct:   762 WGALILVDDRFNNNPDRYISGLSKWVRQQIQ 792


>WB|WBGene00001049 [details] [associations]
            symbol:dog-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
            acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
            [GO:0006139 "nucleobase-containing compound metabolic process"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006974
            "response to DNA damage stimulus" evidence=IMP] [GO:0043570
            "maintenance of DNA repeat elements" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0000723 "telomere maintenance"
            evidence=IMP] [GO:0006289 "nucleotide-excision repair"
            evidence=IGI;IMP] [GO:0090329 "regulation of DNA-dependent DNA
            replication" evidence=IGI;IMP] InterPro:IPR002464
            InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
            PROSITE:PS51193 SMART:SM00488 SMART:SM00491 GO:GO:0005524
            GO:GO:0003677 GO:GO:0000003 GO:GO:0004003 GO:GO:0000723
            GO:GO:0006289 GO:GO:0043570 eggNOG:COG1199
            GeneTree:ENSGT00530000063199 GO:GO:0090329 KO:K15362 EMBL:Z81526
            PIR:T21711 RefSeq:NP_493618.1 ProteinModelPortal:O62217 SMR:O62217
            STRING:O62217 PaxDb:O62217 EnsemblMetazoa:F33H2.1.1
            EnsemblMetazoa:F33H2.1.2 GeneID:173370 KEGG:cel:CELE_F33H2.1
            UCSC:F33H2.1 CTD:173370 WormBase:F33H2.1 HOGENOM:HOG000021716
            InParanoid:O62217 OMA:EKELDDS NextBio:879367 Uniprot:O62217
        Length = 983

 Score = 126 (49.4 bits), Expect = 5.4e-08, Sum P(4) = 5.4e-08
 Identities = 24/73 (32%), Positives = 43/73 (58%)

Query:    69 LCPYFLARQAIIH-AKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSL 127
             LCPYF   + +   A I+   + YL+DP I N    ++ R+S+V+ DEAHNI++ C ++ 
Sbjct:   348 LCPYFSTNRILTQDADIIFCPFSYLVDPLIRNSSDVQI-RNSIVILDEAHNIEDTCREAA 406

Query:   128 SVRINRRTIEKAV 140
             S     + ++ ++
Sbjct:   407 SFSFTEKELDDSI 419

 Score = 126 (49.4 bits), Expect = 1.2e-07, Sum P(5) = 1.2e-07
 Identities = 24/73 (32%), Positives = 43/73 (58%)

Query:   724 LCPYFLARQAIIH-AKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSL 782
             LCPYF   + +   A I+   + YL+DP I N    ++ R+S+V+ DEAHNI++ C ++ 
Sbjct:   348 LCPYFSTNRILTQDADIIFCPFSYLVDPLIRNSSDVQI-RNSIVILDEAHNIEDTCREAA 406

Query:   783 SVRINRRTIEKAV 795
             S     + ++ ++
Sbjct:   407 SFSFTEKELDDSI 419

 Score = 72 (30.4 bits), Expect = 5.4e-08, Sum P(4) = 5.4e-08
 Identities = 16/70 (22%), Positives = 33/70 (47%)

Query:   597 GQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSV 656
             G ++  +   VP G++CF  SY  L+ +         +  ++ +K++  E + + +  SV
Sbjct:   752 GAIIKYVCSNVPAGILCFLPSYRVLDQLKQCMIRNSTMRQIEMKKVVLYEPRRSSELTSV 811

Query:   657 SKERDGKIVD 666
               + D  I D
Sbjct:   812 MDQFDAAIFD 821

 Score = 70 (29.7 bits), Expect = 1.2e-07, Sum P(5) = 1.2e-07
 Identities = 20/62 (32%), Positives = 33/62 (53%)

Query:   426 LMIDDLPVFFPYEY-IYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMN 484
             LM+  +PV  P    +Y  Q   +V +  AL    + L E P+G+GKT +LL+   A++ 
Sbjct:    75 LMMLGVPVRVPRGLSLYSTQKLMIVRILTALKNSQNVLGESPTGSGKTMALLASTCAWLK 134

Query:   485 AH 486
              +
Sbjct:   135 QY 136

 Score = 62 (26.9 bits), Expect = 1.2e-07, Sum P(5) = 1.2e-07
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query:   492 KLLYCSRTVPEIEKVVEELARL-FDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDIS 550
             ++ Y +RT  +I +VV+E +RL +   +KH         +L+SR+  CI+       DIS
Sbjct:   239 RIYYGTRTHKQIAQVVKEFSRLPYAKILKHT--------ILASREQSCINPAARKHADIS 290

 Score = 61 (26.5 bits), Expect = 5.4e-08, Sum P(4) = 5.4e-08
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query:   361 CLDSSLAIKPVFDRFQTVVITSGTLSPLD 389
             C+  +L+    F+  +++V+ SGTL P+D
Sbjct:   666 CMSPALSFFDAFNETRSIVLASGTLCPMD 694

 Score = 57 (25.1 bits), Expect = 0.00011, Sum P(3) = 0.00011
 Identities = 38/164 (23%), Positives = 70/164 (42%)

Query:   436 PYEYIYPEQYAYMVELKK-ALDAKGHCLLEM---PSGTG-KTT-SL--LSLIVAYMNAHP 487
             P    Y E+ A++ +      D K   + E    P   G KTT SL  +S  +++ +A  
Sbjct:   619 PRNMQYKEENAWLADAAADGDDWKDPSMSETGHKPISEGCKTTISLWCMSPALSFFDAFN 678

Query:   488 LDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGL---VLS----SRKNLCIH 540
              +   ++  S T+  ++ +  EL   F   ++ ++ IN   +   VL       +  C +
Sbjct:   679 -ETRSIVLASGTLCPMDTLKTELGMEFKQQVEGDQVINKDNIFAAVLPIGPFGNRIQCTY 737

Query:   541 SEFETRD-DISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESV 583
                 T D + S     G ++  +   VP G++CF  SY  L+ +
Sbjct:   738 RN--TSDPESSFYCELGAIIKYVCSNVPAGILCFLPSYRVLDQL 779

 Score = 46 (21.3 bits), Expect = 5.4e-08, Sum P(4) = 5.4e-08
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query:   850 LQGKTDYGIMIFADKRFARSD-------KRSKLPKWIQEYL 883
             L+ K D+G M+  D+R  R           +++ KWI+  L
Sbjct:   910 LRHKNDWGAMLMIDERLERQTGNLVGGASSARVSKWIRAQL 950

 Score = 37 (18.1 bits), Expect = 1.2e-07, Sum P(5) = 1.2e-07
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query:   222 TRLRVQQVVQESPATFLKDISSKP 245
             TR   Q V +E P+T  +    KP
Sbjct:    21 TRSAFQVVKEEQPSTSTEPDDKKP 44


>ASPGD|ASPL0000038959 [details] [associations]
            symbol:AN10414 species:162425 "Emericella nidulans"
            [GO:0006139 "nucleobase-containing compound metabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] InterPro:IPR006554
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
            InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
            SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
            GO:GO:0005634 GO:GO:0003677 EMBL:BN001306 GO:GO:0004003
            PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
            EnsemblFungi:CADANIAT00009590 Uniprot:C8VHC2
        Length = 841

 Score = 112 (44.5 bits), Expect = 0.00058, Sum P(3) = 0.00058
 Identities = 44/184 (23%), Positives = 78/184 (42%)

Query:   701 REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL 760
             R+  LA  V  I  L ++G++LGLCPY+ +R  + H++    S    L+  I        
Sbjct:   301 RDHALAT-VKDIEDLGKLGKKLGLCPYYASRGVVSHSE---RSARDALNLSI-------- 348

Query:   761 ARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEY 820
              +  VV+ DEAHN+ +   +  SV +    +  ++  + T     K   +  +     + 
Sbjct:   349 -KGHVVIIDEAHNLMDAISNIHSVTVTLSQLRTSIFQLTTYARKFKTRLKGKNRNYIAQV 407

Query:   821 ARLVEGLRD-AQSARETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWI 879
              RL+  + D  QS  +        VL  +++ GK   G       +  R    SKL + +
Sbjct:   408 IRLISSIADHLQSLIDNKQASEGSVLSSDLMAGK---GADQINPYKLCRYLNESKLARKV 464

Query:   880 QEYL 883
               Y+
Sbjct:   465 DGYI 468

 Score = 99 (39.9 bits), Expect = 5.7e-08, Sum P(3) = 5.7e-08
 Identities = 36/151 (23%), Positives = 66/151 (43%)

Query:    46 REAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKEL 105
             R+  LA  V  I  L ++G++LGLCPY+ +R  + H++    S    L+  I        
Sbjct:   301 RDHALAT-VKDIEDLGKLGKKLGLCPYYASRGVVSHSE---RSARDALNLSI-------- 348

Query:   106 ARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEY 165
              +  VV+ DEAHN+ +   +  SV +    +  ++  + T     K   +  +     + 
Sbjct:   349 -KGHVVIIDEAHNLMDAISNIHSVTVTLSQLRTSIFQLTTYARKFKTRLKGKNRNYIAQV 407

Query:   166 ARLVEGLRD-AQSARETDVVLANPVLPDEIL 195
              RL+  + D  QS  +        VL  +++
Sbjct:   408 IRLISSIADHLQSLIDNKQASEGSVLSSDLM 438

 Score = 90 (36.7 bits), Expect = 5.7e-08, Sum P(3) = 5.7e-08
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query:   587 RDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQ 638
             RD   +I + G+    +   +PDG+V FF SY YL  V+  W +  + +N Q
Sbjct:   600 RDAEKMILDLGRTFTQLCRAIPDGIVAFFPSYEYLSRVLNIWKNAVVRENKQ 651

 Score = 84 (34.6 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
 Identities = 32/105 (30%), Positives = 46/105 (43%)

Query:   510 LARLFDYYIKHNEEINMTGLVLSSRKNLCIHS--------EFET----RDDISVIRNYGQ 557
             L  LF Y  K        G V+ S +NL  H+        EF+     RD   +I + G+
Sbjct:   553 LNHLFSYVPKDRLNTFSYGHVIPS-ENLTAHTLARGVTGCEFDFTYAGRDAEKMILDLGR 611

Query:   558 LLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVD 602
                 +   +PDG+V FF SY YL  V     + +V+R   Q L +
Sbjct:   612 TFTQLCRAIPDGIVAFFPSYEYLSRVLNIWKN-AVVRENKQTLYE 655

 Score = 72 (30.4 bits), Expect = 5.7e-08, Sum P(3) = 5.7e-08
 Identities = 11/34 (32%), Positives = 22/34 (64%)

Query:   850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
             ++ + DY  ++  DKR+ ++   +KLP WI++ L
Sbjct:   781 IRHRNDYAAIVLIDKRYGKTSIEAKLPGWIKQSL 814

 Score = 60 (26.2 bits), Expect = 3.5e-05, Sum P(4) = 3.5e-05
 Identities = 31/152 (20%), Positives = 65/152 (42%)

Query:   250 ISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDI-SSKVCIERKPLRFCAERLASLLR 308
             I++  R I S  +HL++ +  +Q  + S  +   D+ + K   +  P + C     S L 
Sbjct:   404 IAQVIRLISSIADHLQSLIDNKQASEGSVLS--SDLMAGKGADQINPYKLCRYLNESKLA 461

Query:   309 TLEITNLTDFSSLVVITHL---ATL-VSSYTKGFAIIVEPFSDKA----PTVPNPV-LYF 359
               ++    DFS           +T+ V  + + F + +   S +        P  + L++
Sbjct:   462 R-KVDGYIDFSQSKANAQAEPKSTIPVLFHIQSFLLPLMNLSSEGRLFFTKTPGDIQLHY 520

Query:   360 CCLDSSLAIKPVFDRFQTVVITSGTLSPLDMY 391
               LD +   + + +  + V++  GT+SP+  Y
Sbjct:   521 MLLDPTNHFREIVEDARAVILAGGTMSPMSDY 552

 Score = 58 (25.5 bits), Expect = 0.00010, Sum P(4) = 0.00010
 Identities = 20/61 (32%), Positives = 29/61 (47%)

Query:   492 KLLYCSRTVPEIEKVVEELARL---------FDYYIKHNEEIN--MTGLVLSSRKNLCIH 540
             K+ YCSRT  ++ +   EL R+             +   EE    +  + L SRKNLCI+
Sbjct:   196 KIFYCSRTHSQLMQFASELRRVTMPSTLPESLRQGLTDEEEQGERIKHISLGSRKNLCIN 255

Query:   541 S 541
             S
Sbjct:   256 S 256

 Score = 53 (23.7 bits), Expect = 3.5e-05, Sum P(4) = 3.5e-05
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query:     2 SKERDGKIVDGRCHSL-TSSSVRDRHKAGENIPVCDFY 38
             ++E + K +  R H+L T   + D  K G+ + +C +Y
Sbjct:   290 TEEDEAKTLSFRDHALATVKDIEDLGKLGKKLGLCPYY 327

 Score = 50 (22.7 bits), Expect = 0.00010, Sum P(4) = 0.00010
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query:   432 PVFFPYEYI-YPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSL 478
             P  F + Y  Y  Q  +M  L + L+     + E P+G+G    ++ L
Sbjct:    14 PQTFNHPYTPYDIQVRFMQSLYECLEEGKVAIFESPTGSGPRLQIIEL 61

 Score = 38 (18.4 bits), Expect = 0.00052, Sum P(3) = 0.00052
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query:   604 ACVVPDGVVCFFTS 617
             A    DG+ CFF S
Sbjct:   823 AATTLDGLACFFRS 836


>UNIPROTKB|G3N0I3 [details] [associations]
            symbol:BRIP1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491
            INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
            GO:GO:0004003 TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199
            EMBL:DAAA02048371 Ensembl:ENSBTAT00000065712 Uniprot:G3N0I3
        Length = 756

 Score = 93 (37.8 bits), Expect = 7.9e-08, Sum P(4) = 7.9e-08
 Identities = 29/99 (29%), Positives = 48/99 (48%)

Query:   551 VIRNYGQLLVDIACVVPDG-VVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACVVPD 609
             VI N  Q+ V      P G  +C   ++ + E+ FE +D++      G LL+ +   +  
Sbjct:   501 VINN-SQVWVGTIGSGPKGRSLC--ATFQHTET-FEFQDEV------GALLLSVCQTISQ 550

Query:   610 GVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQ 648
             G++CF  SY  LE +   W   G+  NL+  K + +E Q
Sbjct:   551 GILCFLPSYKLLEKLKERWLSTGLWYNLELVKTVIVEPQ 589

 Score = 84 (34.6 bits), Expect = 0.00085, Sum P(3) = 0.00085
 Identities = 37/131 (28%), Positives = 58/131 (44%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMT----GLVLSSRK--NLCI---H 540
             V  ++  S T+  ++    EL   F   ++ N  IN +    G + S  K  +LC    H
Sbjct:   468 VWAIVLTSGTLSPMKSFSSELGVTFTIQLEANHVINNSQVWVGTIGSGPKGRSLCATFQH 527

Query:   541 SE-FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQL 599
             +E FE +D++      G LL+ +   +  G++CF  SY  LE + E    +S    Y   
Sbjct:   528 TETFEFQDEV------GALLLSVCQTISQGILCFLPSYKLLEKLKERW--LSTGLWYNLE 579

Query:   600 LVDIACVVPDG 610
             LV    V P G
Sbjct:   580 LVKTVIVEPQG 590

 Score = 73 (30.8 bits), Expect = 7.9e-08, Sum P(4) = 7.9e-08
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query:   356 VLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMY 391
             VL F CL+ ++A   +  +   +V+TSGTLSP+  +
Sbjct:   449 VLNFWCLNPAVAFSDINGKVWAIVLTSGTLSPMKSF 484

 Score = 71 (30.1 bits), Expect = 7.9e-08, Sum P(4) = 7.9e-08
 Identities = 25/107 (23%), Positives = 53/107 (49%)

Query:   805 LKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLA-NPVLPDEILQGKTDYGIMIFAD 863
             +K+++     +  +++++L  GL   +   E     A N  L    ++ K D+G +I  D
Sbjct:   650 VKDLQVELKRQYNDQHSKL-RGLLPGRQWYEIQAYRALNQAL-GRCIRHKNDWGALILVD 707

Query:   864 KRFARSDKR--SKLPKWIQEYLTDNLTNLSTEEAV-QLSKRWLRQMA 907
              RF  +  R  S L KW+++ +  + T  S  E++ + +K+  + +A
Sbjct:   708 DRFRSNPSRYISGLSKWVRQLIQHHSTFESALESLAEFAKKHQKVIA 754

 Score = 63 (27.2 bits), Expect = 7.9e-08, Sum P(4) = 7.9e-08
 Identities = 24/86 (27%), Positives = 40/86 (46%)

Query:    92 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLK 151
             LLD K  ++  KE     VV+ DEAHNI++   +S S  +    +  A   + ++     
Sbjct:   237 LLDGKNMDINLKE----QVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMINY-- 290

Query:   152 EMKEADSAKLREEYARLVEGLRDAQS 177
              +++ D   LR     L+  L +A S
Sbjct:   291 NIRKKDHEPLRAVCCSLINWL-EASS 315

 Score = 56 (24.8 bits), Expect = 0.00049, Sum P(3) = 0.00049
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query:   490 VTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             + K+ + +RT  +I ++  EL R   Y       + MT  +LSSR + C+H E
Sbjct:   179 IPKIYFGTRTHKQIAQITRELQRTA-Y-----SGVPMT--ILSSRDHTCVHPE 223


>UNIPROTKB|Q4KBT0 [details] [associations]
            symbol:PFL_3198 "DEAD 2 domain protein" species:220664
            "Pseudomonas protegens Pf-5" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR001650
            InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 PROSITE:PS51194
            SMART:SM00491 GO:GO:0005524 GO:GO:0003677 EMBL:CP000076
            GenomeReviews:CP000076_GR GO:GO:0004003 eggNOG:COG1199
            RefSeq:YP_260303.1 ProteinModelPortal:Q4KBT0 STRING:Q4KBT0
            GeneID:3478111 KEGG:pfl:PFL_3198 PATRIC:19875717
            HOGENOM:HOG000183657 OMA:YLAFFSS ProtClustDB:CLSK866841
            BioCyc:PFLU220664:GIX8-3213-MONOMER Uniprot:Q4KBT0
        Length = 758

 Score = 104 (41.7 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
 Identities = 34/146 (23%), Positives = 69/146 (47%)

Query:   679 DRHKAGENIPVCD-FYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHA 737
             D+   GE+ P+   FY++  A  + A   P +     L+E+  E  +CPY+L+++    +
Sbjct:   279 DKACHGESCPLAKGFYDRLPAARQAASQVP-LLDRQALREVALEHQVCPYYLSQEMARWS 337

Query:   738 KIVVYSYHYLLD-PKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVG 796
              +VV  Y+Y  D   +   +++       V+ DEAHN+        S  ++++ +     
Sbjct:   338 DLVVADYNYYFDFSALLFGLAQANQWQVAVLVDEAHNLVERGRGMYSASLDQQQLASVRS 397

Query:   797 NI-QTLEGTLKEMKEADSAKLREEYA 821
             +  Q L+  L+ +    +A  +E+ A
Sbjct:   398 SAPQALKSPLQRLNREWNALHKEQVA 423

 Score = 71 (30.1 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query:   849 ILQGKTDYGIMIFADKRFARSDKRSKLPKW 878
             +++G++D G+++  D RFA    R  LP W
Sbjct:   719 VIRGQSDRGVLVLIDDRFAEPRVRQLLPSW 748

 Score = 70 (29.7 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
 Identities = 24/81 (29%), Positives = 37/81 (45%)

Query:   435 FPYEYIYPEQYAYMVELKKALDAKGHCLL-EMPSGTGKTTSLLSLIVAYMNAHPLDVTKL 493
             FP+      Q A    + KA+   G CLL + P+G GKT   +  ++  M A  LD   L
Sbjct:   178 FPHAEFRRGQRALAESVYKAVST-GRCLLAQAPTGIGKTLGTIFPMLKAMAAQQLDT--L 234

Query:   494 LYCSRTVPEIEKVVEELARLF 514
             L+ +   P  +  ++    LF
Sbjct:   235 LFLTAKTPGRQLALDAARVLF 255


>UNIPROTKB|J3KS24 [details] [associations]
            symbol:BRIP1 "Fanconi anemia group J protein" species:9606
            "Homo sapiens" [GO:0016817 "hydrolase activity, acting on acid
            anhydrides" evidence=IEA] InterPro:IPR014013 PROSITE:PS51193
            EMBL:AC002994 EMBL:AC005969 EMBL:AC060798 HGNC:HGNC:20473
            GO:GO:0016817 Ensembl:ENST00000577913 Uniprot:J3KS24
        Length = 69

 Score = 121 (47.7 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 23/58 (39%), Positives = 38/58 (65%)

Query:   428 IDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNA 485
             I  + ++FPY+  YP Q A M  + + L++K HCLLE P+G+GK+ +LL   +A+  +
Sbjct:    10 IGGVKIYFPYK-AYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQS 66


>WB|WBGene00010839 [details] [associations]
            symbol:chl-1 species:6239 "Caenorhabditis elegans"
            [GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
            [GO:0016818 "hydrolase activity, acting on acid anhydrides, in
            phosphorus-containing anhydrides" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
            process" evidence=IEA] [GO:0008026 "ATP-dependent helicase
            activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0016817 "hydrolase activity, acting on acid anhydrides"
            evidence=IEA] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] InterPro:IPR006554 InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
            SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
            GO:GO:0009792 GO:GO:0003677 GO:GO:0004003 eggNOG:COG1199
            PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 HOGENOM:HOG000241266
            OMA:NLGRCVV GeneTree:ENSGT00530000063199 EMBL:Z49128
            RefSeq:NP_499295.2 ProteinModelPortal:Q21489 SMR:Q21489
            STRING:Q21489 PaxDb:Q21489 EnsemblMetazoa:M03C11.2 GeneID:176457
            KEGG:cel:CELE_M03C11.2 UCSC:M03C11.2 CTD:176457 WormBase:M03C11.2
            InParanoid:Q21489 NextBio:892664 Uniprot:Q21489
        Length = 830

 Score = 110 (43.8 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
 Identities = 30/109 (27%), Positives = 52/109 (47%)

Query:    35 CDFYEKF---DAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 91
             C+FY      D V     L+  + S  ++ + G+    CPYF  R+++   ++V+  Y  
Sbjct:   272 CEFYNSTQIEDVVN--GVLSNKLKSTLEVSKQGKLSNGCPYFATRKSVPQCQLVLLPYQV 329

Query:    92 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 140
             LL          EL + +V+V DEAHN+ N      S  I+ +++  A+
Sbjct:   330 LLHDGTRKAWGIEL-KDNVIVLDEAHNVLNTISSLYSAEISTKSLTLAL 377

 Score = 110 (43.8 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
 Identities = 30/109 (27%), Positives = 52/109 (47%)

Query:   690 CDFYEKF---DAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYSYHY 746
             C+FY      D V     L+  + S  ++ + G+    CPYF  R+++   ++V+  Y  
Sbjct:   272 CEFYNSTQIEDVVN--GVLSNKLKSTLEVSKQGKLSNGCPYFATRKSVPQCQLVLLPYQV 329

Query:   747 LLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAV 795
             LL          EL + +V+V DEAHN+ N      S  I+ +++  A+
Sbjct:   330 LLHDGTRKAWGIEL-KDNVIVLDEAHNVLNTISSLYSAEISTKSLTLAL 377

 Score = 76 (31.8 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
 Identities = 20/79 (25%), Positives = 42/79 (53%)

Query:   435 FPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLL 494
             FP++  Y  Q   M E+++ ++ +   + E P+GTGK+ S+L   + ++ A  L ++  L
Sbjct:     6 FPFQP-YDIQLNLMREIRQCIEQRKIGIFESPTGTGKSLSVLCSTMTWLEAEELRISTDL 64

Query:   495 YCSRTVPEIEKVVEELARL 513
               S  + E+   + E  ++
Sbjct:    65 --STRLGEVHTKITECDKI 81

 Score = 76 (31.8 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
 Identities = 23/87 (26%), Positives = 43/87 (49%)

Query:   584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
             ++TR   + +R+    +  +   +P+GVV F  SY +L +      + GI+  ++++K +
Sbjct:   616 YQTRGADTTLRSLATSIQALIPHIPNGVVIFVPSYDFLFNFQKKMKEFGILKRIEEKKAV 675

Query:   644 FIE----TQDALDSRS-VSKERDGKIV 665
             F E    T D  D  S  +K   G I+
Sbjct:   676 FTESRQPTSDVWDRFSRAAKTSKGAIL 702

 Score = 64 (27.6 bits), Expect = 5.8e-05, Sum P(3) = 5.8e-05
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query:   487 PLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
             PL   K+ Y SRT  ++E++ EELA+      +    I    +  +SR  LC++ E
Sbjct:   180 PLKCLKIFYASRTHSQLEQLAEELAKT-----RFQPRI----VTCASRGTLCVNEE 226

 Score = 56 (24.8 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query:   850 LQGKTDYGIMIFADKRFARSDKRSKLPKWI 879
             ++ + DY  +   D R+A+   R KL  WI
Sbjct:   774 IRHRRDYAAVYLFDDRYAKESTRRKLSTWI 803


>UNIPROTKB|Q4JC68 [details] [associations]
            symbol:Saci_0192 "ATP-dependent DNA helicase Saci_0192"
            species:330779 "Sulfolobus acidocaldarius DSM 639" [GO:0032508 "DNA
            duplex unwinding" evidence=IDA] [GO:0043139 "5'-3' DNA helicase
            activity" evidence=IDA] [GO:0051539 "4 iron, 4 sulfur cluster
            binding" evidence=IDA] InterPro:IPR006555 InterPro:IPR010614
            InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
            SMART:SM00491 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
            GO:GO:0006281 GO:GO:0006351 GO:GO:0051539 GO:GO:0004003
            EMBL:CP000077 GenomeReviews:CP000077_GR eggNOG:COG1199
            GO:GO:0043139 KO:K10844 RefSeq:YP_254904.1 PDB:3CRV PDB:3CRW
            PDBsum:3CRV PDBsum:3CRW ProteinModelPortal:Q4JC68 GeneID:3474005
            KEGG:sai:Saci_0192 HOGENOM:HOG000271001 OMA:CPYEYAK
            ProtClustDB:CLSK802665 BioCyc:SACI330779:GH9J-270-MONOMER
            EvolutionaryTrace:Q4JC68 Uniprot:Q4JC68
        Length = 551

 Score = 118 (46.6 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
 Identities = 44/169 (26%), Positives = 82/169 (48%)

Query:   685 ENIPVCDFYE-KFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHAKIVVYS 743
             E+IP C + E K   V  +   +P +  + KLK+ G +   CPY+    ++  A ++  +
Sbjct:    98 EDIP-CKYCELKGSIVEVKTDDSP-LSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155

Query:   744 YHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEG 803
             Y Y    +    +  +L R  ++V DEAHN+D V  + L         E+++  I T++ 
Sbjct:   156 YPYFFIDRYREFIDIDL-REYMIVIDEAHNLDKV--NELE--------ERSLSEI-TIQM 203

Query:   804 TLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLAN-PVLPDEILQ 851
              +K+ K  +S ++    ++L+  LR+     E  + + N P L  E L+
Sbjct:   204 AIKQSKSEESRRI---LSKLLNQLREVVLPDEKYIKVENVPKLSKEELE 249

 Score = 64 (27.6 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
 Identities = 23/80 (28%), Positives = 41/80 (51%)

Query:   463 LEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNE 522
             L  P+G+GKT  L SL+V+ +   P    K+L+  RT  E   +  +L ++        E
Sbjct:    27 LNAPTGSGKT--LFSLLVS-LEVKP----KVLFVVRTHNEFYPIYRDLTKI-------RE 72

Query:   523 EINMTGLVLSSRKNLCIHSE 542
             + N+T   L  + + C+++E
Sbjct:    73 KRNITFSFLVGKPSSCLYAE 92


>GENEDB_PFALCIPARUM|MAL13P1.134 [details] [associations]
            symbol:MAL13P1.134 "helicase, putative"
            species:5833 "Plasmodium falciparum" [GO:0016020 "membrane"
            evidence=ISS] InterPro:IPR006554 InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
            SMART:SM00491 GO:GO:0005524 GO:GO:0016020 GO:GO:0003677
            GO:GO:0004003 EMBL:AL844509 KO:K11273 PANTHER:PTHR11472:SF5
            RefSeq:XP_001349985.1 ProteinModelPortal:Q8IE72
            EnsemblProtists:MAL13P1.134:mRNA GeneID:813685 KEGG:pfa:MAL13P1.134
            EuPathDB:PlasmoDB:PF3D7_1324500 HOGENOM:HOG000281821
            ProtClustDB:CLSZ2500734 Uniprot:Q8IE72
        Length = 1099

 Score = 98 (39.6 bits), Expect = 0.00085, Sum P(4) = 0.00085
 Identities = 22/77 (28%), Positives = 49/77 (63%)

Query:   712 ITKLKEM--GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 769
             I  +K++     + +CPY+L+++ I +A I++  Y  +L+  I N +   + ++++V+FD
Sbjct:   350 IEDIKDICKNEHIEICPYYLSKENIKNADIILLPYICILNENIRNNLKINI-KNNIVIFD 408

Query:   770 EAHNI-DNV-CVDSLSV 784
             E+ NI +N+   +S+S+
Sbjct:   409 ESQNIIENINSCNSVSI 425

 Score = 74 (31.1 bits), Expect = 0.00085, Sum P(4) = 0.00085
 Identities = 15/52 (28%), Positives = 30/52 (57%)

Query:   492 KLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEF 543
             ++  CSRT  ++ +   EL ++     K  E+ ++  +++ SRK+LCI+  F
Sbjct:   223 QIFICSRTQSQLNQYFHELKKIEK---KMGEDFSINMIIIGSRKHLCINEAF 271

 Score = 53 (23.7 bits), Expect = 0.00085, Sum P(4) = 0.00085
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query:   850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTD 885
             L+   D+    F D RF++ +    LP +I+ ++ D
Sbjct:   992 LRHVNDFSSFFFLDYRFSKKEIFQNLPSFIKTHIND 1027

 Score = 40 (19.1 bits), Expect = 0.00085, Sum P(4) = 0.00085
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query:   779 VDSLSVRINRRTIEKAVGNIQTLEGTLKEMKE 810
             V S+S   N ++I K   N+  + GTL  M+E
Sbjct:   723 VISVSSCNNFQSITKDCSNVILIGGTLYPMEE 754


>UNIPROTKB|Q8IE72 [details] [associations]
            symbol:MAL13P1.134 "DEAD box helicase, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0016020 "membrane"
            evidence=ISS] InterPro:IPR006554 InterPro:IPR006555
            InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
            Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
            SMART:SM00491 GO:GO:0005524 GO:GO:0016020 GO:GO:0003677
            GO:GO:0004003 EMBL:AL844509 KO:K11273 PANTHER:PTHR11472:SF5
            RefSeq:XP_001349985.1 ProteinModelPortal:Q8IE72
            EnsemblProtists:MAL13P1.134:mRNA GeneID:813685 KEGG:pfa:MAL13P1.134
            EuPathDB:PlasmoDB:PF3D7_1324500 HOGENOM:HOG000281821
            ProtClustDB:CLSZ2500734 Uniprot:Q8IE72
        Length = 1099

 Score = 98 (39.6 bits), Expect = 0.00085, Sum P(4) = 0.00085
 Identities = 22/77 (28%), Positives = 49/77 (63%)

Query:   712 ITKLKEM--GRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFD 769
             I  +K++     + +CPY+L+++ I +A I++  Y  +L+  I N +   + ++++V+FD
Sbjct:   350 IEDIKDICKNEHIEICPYYLSKENIKNADIILLPYICILNENIRNNLKINI-KNNIVIFD 408

Query:   770 EAHNI-DNV-CVDSLSV 784
             E+ NI +N+   +S+S+
Sbjct:   409 ESQNIIENINSCNSVSI 425

 Score = 74 (31.1 bits), Expect = 0.00085, Sum P(4) = 0.00085
 Identities = 15/52 (28%), Positives = 30/52 (57%)

Query:   492 KLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEF 543
             ++  CSRT  ++ +   EL ++     K  E+ ++  +++ SRK+LCI+  F
Sbjct:   223 QIFICSRTQSQLNQYFHELKKIEK---KMGEDFSINMIIIGSRKHLCINEAF 271

 Score = 53 (23.7 bits), Expect = 0.00085, Sum P(4) = 0.00085
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query:   850 LQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTD 885
             L+   D+    F D RF++ +    LP +I+ ++ D
Sbjct:   992 LRHVNDFSSFFFLDYRFSKKEIFQNLPSFIKTHIND 1027

 Score = 40 (19.1 bits), Expect = 0.00085, Sum P(4) = 0.00085
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query:   779 VDSLSVRINRRTIEKAVGNIQTLEGTLKEMKE 810
             V S+S   N ++I K   N+  + GTL  M+E
Sbjct:   723 VISVSSCNNFQSITKDCSNVILIGGTLYPMEE 754


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      941       930   0.00092  122 3  11 22  0.37    34
                                                     38  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  101
  No. of states in DFA:  620 (66 KB)
  Total size of DFA:  383 KB (2184 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  84.00u 0.11s 84.11t   Elapsed:  00:00:09
  Total cpu time:  84.06u 0.11s 84.17t   Elapsed:  00:00:09
  Start:  Thu Aug 15 14:49:46 2013   End:  Thu Aug 15 14:49:55 2013
WARNINGS ISSUED:  1
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with ercc2 ercc2 ercc2 excision repair cross-complementing rodent repair deficiency, complementation group 2	gene_product from Danio rerio	2.7e-147
BLAST match view associations BLAST with ERCC2/XPD ERCC2/XPD ERCC2/XPD ERCC2/XPD protein	protein from Xiphophorus maculatus	3.9e-146
BLAST match view associations BLAST with Xpd Xpd Xpd Xeroderma pigmentosum D ortholog (H. sapiens)	protein from Drosophila melanogaster	6.3e-144
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit	protein from Homo sapiens	3.5e-141
BLAST match view associations BLAST with Ercc2 Ercc2 Ercc2 excision repair cross-complementing rodent repair deficiency, complementation group 2	gene from Rattus norvegicus	3.1e-140
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit	protein from Cricetulus griseus	3.9e-140
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit	protein from Bos taurus	5.0e-140
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit	protein from Bos taurus	5.0e-140
BLAST match view associations BLAST with Ercc2 Ercc2 Ercc2 excision repair cross-complementing rodent repair deficiency, complementation group 2	protein from Mus musculus	4.4e-139
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit	protein from Homo sapiens	6.4e-136
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 Uncharacterized protein	protein from Canis lupus familiaris	1.5e-134
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit	protein from Homo sapiens	9.1e-117
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 Uncharacterized protein	protein from Canis lupus familiaris	4.3e-111
BLAST match view associations BLAST with Y50D7A.2 Y50D7A.2 Y50D7A.2	gene from Caenorhabditis elegans	7.6e-106
BLAST match view associations BLAST with repD repD repD transcription factor IIH component	gene from Dictyostelium discoideum	3.4e-103
BLAST match view associations BLAST with RAD3 RAD3 RAD3	gene_product from Candida albicans	5.3e-101
BLAST match view associations BLAST with RAD3 RAD3 RAD3 Putative uncharacterized protein RAD3	protein from Candida albicans SC5314	5.3e-101
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit	protein from Homo sapiens	2.0e-98
BLAST match view associations BLAST with UVH6 UVH6 UVH6 ULTRAVIOLET HYPERSENSITIVE 6	protein from Arabidopsis thaliana	7.4e-96
BLAST match view associations BLAST with RAD3 RAD3 RAD3 5' to 3' DNA helicase	gene from Saccharomyces cerevisiae	4.1e-75
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit	protein from Homo sapiens	5.0e-55
BLAST match view associations BLAST with Y50D7A.11 Y50D7A.11 Y50D7A.11	gene from Caenorhabditis elegans	4.1e-41
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 cDNA FLJ57462, highly similar to TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-)	protein from Homo sapiens	9.2e-39
BLAST match view associations BLAST with I3LNA6 I3LNA6 I3LNA6 Uncharacterized protein	protein from Sus scrofa	1.1e-28
BLAST match view associations BLAST with I3LAE6 I3LAE6 I3LAE6 Uncharacterized protein	protein from Sus scrofa	5.9e-27
BLAST match view associations BLAST with ERCC2 ERCC2 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit	protein from Homo sapiens	1.0e-24
BLAST match view associations BLAST with I3LHB7 I3LHB7 I3LHB7 Uncharacterized protein	protein from Sus scrofa	7.0e-23
BLAST match view associations BLAST with GL14463 GL14463 GL14463 Regulator of telomere elongation helicase 1 homolog	protein from Drosophila persimilis	8.7e-23
BLAST match view associations BLAST with GA17940 GA17940 GA17940 Regulator of telomere elongation helicase 1 homolog	protein from Drosophila pseudoobscura pseudoobscura	8.7e-23
BLAST match view associations BLAST with rtel1 rtel1 rtel1 regulator of telomere elongation helicase 1	gene_product from Danio rerio	1.9e-22
BLAST match view associations BLAST with Rtel1 Rtel1 Rtel1 regulator of telomere elongation helicase 1	protein from Mus musculus	3.2e-22
BLAST match view associations BLAST with CG4078 CG4078 CG4078	protein from Drosophila melanogaster	3.3e-22
BLAST match view associations BLAST with Rtel1 Rtel1 Rtel1 Regulator of telomere elongation helicase 1	protein from Mus spretus	4.0e-22
BLAST match view associations BLAST with GE16425 GE16425 GE16425 Regulator of telomere elongation helicase 1 homolog	protein from Drosophila yakuba	4.1e-22
BLAST match view associations BLAST with GG18780 GG18780 GG18780 Regulator of telomere elongation helicase 1 homolog	protein from Drosophila erecta	6.6e-22
BLAST match view associations BLAST with GF20802 GF20802 GF20802 Regulator of telomere elongation helicase 1 homolog	protein from Drosophila ananassae	3.8e-21
BLAST match view associations BLAST with CPIJ003765 CPIJ003765 CPIJ003765 Regulator of telomere elongation helicase 1 homolog	protein from Culex quinquefasciatus	5.1e-21
BLAST match view associations BLAST with Rtel1 Rtel1 Rtel1 regulator of telomere elongation helicase 1	gene from Rattus norvegicus	7.3e-21
BLAST match view associations BLAST with GI15901 GI15901 GI15901 Regulator of telomere elongation helicase 1 homolog	protein from Drosophila mojavensis	2.0e-20
BLAST match view associations BLAST with RTEL1 RTEL1 RTEL1 Uncharacterized protein	protein from Canis lupus familiaris	3.8e-20
BLAST match view associations BLAST with AAEL008960 AAEL008960 AAEL008960 Regulator of telomere elongation helicase 1 homolog	protein from Aedes aegypti	4.8e-20
BLAST match view associations BLAST with GH24089 GH24089 GH24089 Regulator of telomere elongation helicase 1 homolog	protein from Drosophila grimshawi	7.9e-20
BLAST match view associations BLAST with GJ16649 GJ16649 GJ16649 Regulator of telomere elongation helicase 1 homolog	protein from Drosophila virilis	1.0e-19
BLAST match view associations BLAST with GK24923 GK24923 GK24923 Regulator of telomere elongation helicase 1 homolog	protein from Drosophila willistoni	1.7e-19
BLAST match view associations BLAST with RTEL1 RTEL1 RTEL1 Regulator of telomere elongation helicase 1	protein from Homo sapiens	4.5e-19
BLAST match view associations BLAST with RTEL1 RTEL1 RTEL1 Regulator of telomere elongation helicase 1	protein from Bos taurus	5.2e-19
BLAST match view associations BLAST with RTEL1 RTEL1 RTEL1 Protein RTEL1-TNFRSF6B	protein from Homo sapiens	8.6e-19
BLAST match view associations BLAST with rtel-1 rtel-1 rtel-1	gene from Caenorhabditis elegans	4.7e-18
BLAST match view associations BLAST with rtel-1 rtel-1 rtel-1 Regulator of telomere elongation helicase 1 homolog	protein from Caenorhabditis elegans	4.7e-18
BLAST match view associations BLAST with RTEL1 RTEL1 RTEL1 Regulator of telomere elongation helicase 1	protein from Pongo abelii	5.0e-18
BLAST match view associations BLAST with orf19.2000 orf19.2000 orf19.2000	gene_product from Candida albicans	8.1e-18
BLAST match view associations BLAST with rtel-1 rtel-1 rtel-1 Regulator of telomere elongation helicase 1 homolog	protein from Caenorhabditis briggsae	8.7e-18
BLAST match view associations BLAST with BRIP1 BRIP1 BRIP1 39S ribosomal protein L36, mitochondrial	protein from Homo sapiens	8.7e-18
BLAST match view associations BLAST with AGAP000634 AGAP000634 AGAP000634 Regulator of telomere elongation helicase 1 homolog	protein from Anopheles gambiae	9.5e-18
BLAST match view associations BLAST with BRIP1 BRIP1 BRIP1 Fanconi anemia group J protein	protein from Homo sapiens	2.5e-17
BLAST match view associations BLAST with Gga.49055 Gga.49055 Gga.49055 Uncharacterized protein	protein from Gallus gallus	7.5e-17
BLAST match view associations BLAST with BRIP1 BRIP1 BRIP1 Fanconi anemia group J protein homolog	protein from Gallus gallus	8.6e-17
BLAST match view associations BLAST with RTEL1 RTEL1 RTEL1 Regulator of telomere elongation helicase 1	protein from Bos taurus	2.1e-16
BLAST match view associations BLAST with BRIP1 BRIP1 BRIP1 Uncharacterized protein	protein from Bos taurus	3.8e-16
BLAST match view associations BLAST with ddx11 ddx11 ddx11 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	gene_product from Danio rerio	4.8e-16
BLAST match view associations BLAST with BRIP1 BRIP1 BRIP1 Uncharacterized protein	protein from Bos taurus	5.0e-16
BLAST match view associations BLAST with BRIP1 BRIP1 BRIP1 Uncharacterized protein	protein from Canis lupus familiaris	6.3e-16
BLAST match view associations BLAST with BRIP1 BRIP1 BRIP1 Uncharacterized protein	protein from Canis lupus familiaris	7.0e-16
BLAST match view associations BLAST with DDX11L8 DDX11L8 DDX11L8 Putative ATP-dependent RNA helicase DDX11-like protein 8	protein from Homo sapiens	1.0e-15
BLAST match view associations BLAST with DDX11 DDX11 DDX11 Uncharacterized protein	protein from Gallus gallus	1.1e-15
BLAST match view associations BLAST with RTEL1-TNFRSF6B RTEL1-TNFRSF6B RTEL1-TNFRSF6B Protein RTEL1-TNFRSF6B	protein from Homo sapiens	1.7e-15
BLAST match view associations BLAST with fncJ fncJ fncJ DEAD/DEAH box helicase	gene from Dictyostelium discoideum	2.9e-15
BLAST match view associations BLAST with DDX12P DDX12P DDX12P Putative ATP-dependent RNA helicase DDX12	protein from Homo sapiens	6.7e-15
BLAST match view associations BLAST with LOC100515028 LOC100515028 LOC100515028 Uncharacterized protein	protein from Sus scrofa	1.1e-14
BLAST match view associations BLAST with Ddx11 Ddx11 Ddx11 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein from Mus musculus	1.2e-14
BLAST match view associations BLAST with DDX11 DDX11 DDX11 Uncharacterized protein	protein from Canis lupus familiaris	1.6e-14
BLAST match view associations BLAST with Brip1 Brip1 Brip1 BRCA1 interacting protein C-terminal helicase 1	protein from Mus musculus	1.6e-14
BLAST match view associations BLAST with LOC100525359 LOC100525359 LOC100525359 Uncharacterized protein	protein from Sus scrofa	5.3e-14
BLAST match view associations BLAST with DDX11 DDX11 DDX11 Probable ATP-dependent RNA helicase DDX11	protein from Homo sapiens	1.6e-13
BLAST match view associations BLAST with AT1G79950 AT1G79950 AT1G79950	protein from Arabidopsis thaliana	3.1e-13
BLAST match view associations BLAST with AT1G20720 AT1G20720 AT1G20720	protein from Arabidopsis thaliana	3.6e-13
BLAST match view associations BLAST with CG11403 CG11403 CG11403	protein from Drosophila melanogaster	7.5e-13
BLAST match view associations BLAST with CHL1 CHL1 CHL1 Probable DNA helicase	gene from Saccharomyces cerevisiae	1.7e-12
BLAST match view associations BLAST with E1BL06 E1BL06 E1BL06 Uncharacterized protein	protein from Bos taurus	1.8e-12
BLAST match view associations BLAST with Ddx11 Ddx11 Ddx11 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	gene from Rattus norvegicus	3.4e-12
BLAST match view associations BLAST with brip1 brip1 brip1 BRCA1 interacting protein C-terminal helicase 1	gene_product from Danio rerio	1.1e-11
BLAST match view associations BLAST with AT1G79890 AT1G79890 AT1G79890	protein from Arabidopsis thaliana	4.1e-11
BLAST match view associations BLAST with GM12432 GM12432 GM12432 Regulator of telomere elongation helicase 1 homolog	protein from Drosophila sechellia	5.9e-11
BLAST match view associations BLAST with Brip1 Brip1 Brip1 BRCA1 interacting protein C-terminal helicase 1	gene from Rattus norvegicus	3.4e-09
BLAST match view associations BLAST with dog-1 dog-1 dog-1	gene from Caenorhabditis elegans	5.4e-08
BLAST match view associations BLAST with BRIP1 BRIP1 BRIP1 Uncharacterized protein	protein from Bos taurus	7.9e-08
BLAST match view associations BLAST with PFL_3198 PFL_3198 PFL_3198 DEAD 2 domain protein	protein from Pseudomonas protegens Pf-5	1.5e-06
BLAST match view associations BLAST with BRIP1 BRIP1 BRIP1 39S ribosomal protein L36, mitochondrial	protein from Homo sapiens	2.5e-06
BLAST match view associations BLAST with chl-1 chl-1 chl-1	gene from Caenorhabditis elegans	3.8e-06
BLAST match view associations BLAST with Saci_0192 Saci_0192 Saci_0192 ATP-dependent DNA helicase Saci_0192	protein from Sulfolobus acidocaldarius DSM 639	4.2e-05
BLAST match view associations BLAST with MAL13P1.134 MAL13P1.134 MAL13P1.134 helicase, putative	gene from Plasmodium falciparum	0.00085