RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11433
(941 letters)
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase,
nucleotide excision repair,; 2.20A {Thermoplasma
acidophilum} PDB: 2vsf_A*
Length = 620
Score = 195 bits (498), Expect = 3e-53
Identities = 66/482 (13%), Positives = 142/482 (29%), Gaps = 127/482 (26%)
Query: 4 ERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAP-GVYSITKLKE 62
D ++ + + + R N C ++ + + + +
Sbjct: 98 VDDLHEINAESLAKFCNMKK-REVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYD 156
Query: 63 MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARS---SVVVFDEAHNI 119
G +CPY + A+ A IV+ Y Y L+ +A S V++ DEAHN+
Sbjct: 157 YGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNL 216
Query: 120 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 179
++ S RI+ ++ +A Q + + L+E +R A
Sbjct: 217 PDIGRSIGSFRISVESLNRADREAQAYGDP--------ELSQKIHVSDLIEMIRSA---- 264
Query: 180 ETDVVLANPVLPDEILQEVVPGNIR-TAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL 238
L + + G++R + F+ +++ + + +R ++
Sbjct: 265 ----------LQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYV 314
Query: 239 KDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRF 298
++ K + + P +
Sbjct: 315 ENEKEK----------------------------------------------VGKVPFSY 328
Query: 299 CAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLY 358
C+ + ++ + + +A I+ P +
Sbjct: 329 CSSVASRIIAFSD---------------------QDEEKYAAILSPEDG-------GYMQ 360
Query: 359 FCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
CLD S ++ + + + SGTL P D Y I F+ + +
Sbjct: 361 AACLDPSGILEVLKES--KTIHMSGTLDPFDFYSDITGFEIPFKKIGEIFPPENRYIAYY 418
Query: 419 R----------ENY--AMGLMIDDL----P----VFFP-YEYIYPEQYAYMVELKKALDA 457
E M +I+D+ V+FP Y + ++ V + +
Sbjct: 419 DGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLM--DRVENRVSFEHMKEY 476
Query: 458 KG 459
+G
Sbjct: 477 RG 478
Score = 129 bits (326), Expect = 4e-31
Identities = 40/256 (15%), Positives = 82/256 (32%), Gaps = 29/256 (11%)
Query: 659 ERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAP-GVYSITKLKE 717
D ++ + + + R N C ++ + + + +
Sbjct: 98 VDDLHEINAESLAKFCNMKK-REVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYD 156
Query: 718 MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARS---SVVVFDEAHNI 774
G +CPY + A+ A IV+ Y Y L+ +A S V++ DEAHN+
Sbjct: 157 YGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNL 216
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
++ S RI+ ++ +A Q + + L+E +R A
Sbjct: 217 PDIGRSIGSFRISVESLNRADREAQAYGDP--------ELSQKIHVSDLIEMIRSA---- 264
Query: 835 ETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEE 894
L + + + I + +K + L + L E
Sbjct: 265 ----------LQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLF--GE 312
Query: 895 AVQLSKRWLRQMAQPF 910
V+ K + ++ +
Sbjct: 313 YVENEKEKVGKVPFSY 328
Score = 92.1 bits (229), Expect = 3e-19
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 11/108 (10%)
Query: 437 YEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYC 496
YE Q + L+ +L LE P+G+GKT L + Y + L V LY
Sbjct: 2 YEN-RQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKV---LYL 57
Query: 497 SRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFE 544
RT + E+V++EL L + + + R N+CI
Sbjct: 58 VRTNSQEEQVIKELRSLSSTM-------KIRAIPMQGRVNMCILYRMV 98
Score = 56.3 bits (136), Expect = 3e-08
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 12/59 (20%)
Query: 852 GKTDYGIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPF 910
D G + DKR + R +P + +++ A + ++ A+
Sbjct: 571 SAEDTGACVILDKRAGQ--FRKFIPDMKK----------TSDPASDIYNFFISAQAREK 617
Score = 55.5 bits (134), Expect = 6e-08
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 579 YLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQ 638
+ S ++T D+ + ++ DI V + +F SY ++ V + + +
Sbjct: 420 GVSSKYDTLDEKE-LDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSFEHM---KE 475
Query: 639 KRKLLFIETQDALD 652
R + E L
Sbjct: 476 YRGIDQKELYSMLK 489
Score = 53.2 bits (128), Expect = 3e-07
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
+ S+++T D+ + ++ DI V + +F SY ++ V
Sbjct: 421 VSSKYDTLDEKE-LDRMATVIEDIILKVKKNTIVYFPSYSLMDRVEN 466
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer
aging, hydrolase; HET: FLC; 2.00A {Sulfolobus
acidocaldarius} PDB: 3crw_1*
Length = 551
Score = 110 bits (275), Expect = 3e-25
Identities = 43/202 (21%), Positives = 85/202 (42%), Gaps = 24/202 (11%)
Query: 23 RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHA 82
++ E+IP C + E ++ + + KLK+ G + CPY+ ++ A
Sbjct: 91 AEKGAESEDIP-CKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKA 149
Query: 83 KIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN 142
++ +Y Y + + +L R ++V DEAHN+D V + ++ TI+ A
Sbjct: 150 DVIALTYPYFFIDRYREFIDIDL-REYMIVIDEAHNLDKVN-ELEERSLSEITIQMA--- 204
Query: 143 IQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLAN-PVLPDEILQEVVPG 201
+K++ S + R ++L+ LR+ E + + N P L E L+ +
Sbjct: 205 ----------IKQSKSEESRRILSKLLNQLREVVLPDEKYIKVENVPKLSKEELEIL--- 251
Query: 202 NIRTAEHFVGFLKRFIEYLKTR 223
A+ + K ++ K
Sbjct: 252 ----ADDYEDIRKDSLKQGKVN 269
Score = 108 bits (271), Expect = 1e-24
Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 22/225 (9%)
Query: 678 RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHA 737
++ E+IP C + E ++ + + KLK+ G + CPY+ ++ A
Sbjct: 91 AEKGAESEDIP-CKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKA 149
Query: 738 KIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN 797
++ +Y Y + + +L R ++V DEAHN+D V + ++ TI+ A
Sbjct: 150 DVIALTYPYFFIDRYREFIDIDL-REYMIVIDEAHNLDKVN-ELEERSLSEITIQMA--- 204
Query: 798 IQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLAN-PVLPDEILQGKTDY 856
+K++ S + R ++L+ LR+ E + + N P L E L+ D
Sbjct: 205 ----------IKQSKSEESRRILSKLLNQLREVVLPDEKYIKVENVPKLSKEELEILADD 254
Query: 857 GIMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKR 901
I D K+ K+ K + + LS + S
Sbjct: 255 YEDIRKDSL-----KQGKVNKIHIGSILRFFSLLSIGSFIPFSYS 294
Score = 85.8 bits (212), Expect = 2e-17
Identities = 33/183 (18%), Positives = 67/183 (36%), Gaps = 35/183 (19%)
Query: 437 YEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYC 496
+ Q ++ + L L P+G+GKT L + + K+L+
Sbjct: 2 VKL-RDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKP-------KVLFV 53
Query: 497 SRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE------------FE 544
RT E + +L ++ E+ N+T L + + C+++E E
Sbjct: 54 VRTHNEFYPIYRDLTKI-------REKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCE 106
Query: 545 TRDDISVIRNYGQLLVDIACVVPDGV---VCFFTSYLYLESVFETRDDISVIRNYGQLLV 601
+ I ++ L + + DG+ C + Y L S+++ D+ + Y +
Sbjct: 107 LKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPY--YSLLNSLYKA--DV-IALTYPYFFI 161
Query: 602 DIA 604
D
Sbjct: 162 DRY 164
Score = 59.6 bits (144), Expect = 3e-09
Identities = 29/247 (11%), Positives = 71/247 (28%), Gaps = 44/247 (17%)
Query: 227 QQVVQESPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQV---VQESPATFLK 283
+ + + + +K S+ + ++S+ + + ++V+ V +E
Sbjct: 194 RSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYIKVENVPKLSKEELEILAD 253
Query: 284 DISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVE 343
D K + + S+LR + ++ F L
Sbjct: 254 DYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIK------------- 300
Query: 344 PFSDKAPTVPNPVLYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQ-PVIM 402
+ S + + D ++++ SGTL P + K+ + ++
Sbjct: 301 -----------------NPEISYYLNLLNDNELSIILMSGTLPPREYMEKVWGIKRNMLY 343
Query: 403 HSFSMTLARPCLLPMVRENYAMGLMIDDLPVFFPYEYIYPEQYAYMVE-LKKALDA-KGH 460
+ + + V Y+ + + L K K +
Sbjct: 344 LDVEREIQKRVSGSYE--------CYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQAKAN 395
Query: 461 CLLEMPS 467
L+ PS
Sbjct: 396 VLVVFPS 402
Score = 58.1 bits (140), Expect = 8e-09
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 10/87 (11%)
Query: 579 YLESVFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQ 638
+ S ++ R D ++ + Y L+ I V+ F SY ++ V++
Sbjct: 365 DVTSKYDMRSD-NMWKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSRI---------S 414
Query: 639 KRKLLFIETQDALDSRSVSKERDGKIV 665
K + E D S + ++
Sbjct: 415 LPKYVESEDSSVEDLYSAISANNKVLI 441
Score = 53.1 bits (127), Expect = 3e-07
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 539 IHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFE 585
+ S+++ R D ++ + Y L+ I V+ F SY ++ V
Sbjct: 366 VTSKYDMRSD-NMWKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMS 411
Score = 52.7 bits (126), Expect = 5e-07
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 852 GKTDYGIMIFADKRFARSDKRSKLPKWIQEYL 883
D + DKRF + L +
Sbjct: 518 DVNDKCNVWLLDKRFESLYWKKNLKCLNANKM 549
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Length = 540
Score = 100 bits (249), Expect = 6e-22
Identities = 33/182 (18%), Positives = 69/182 (37%), Gaps = 17/182 (9%)
Query: 23 RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHA 82
D N C +K + + P ++E + CPY+ R +
Sbjct: 93 GDEEPDEINCSKCRLKDKIKTIEDKEPS-------KLIEEFKDAVDYCPYYSLRANLKDK 145
Query: 83 KIVVYSYHYLLDPKIANVVSKELA-----RSSVVVFDEAHNIDNVCVDSLSVRINRRTIE 137
++ +Y YL I N V ++V DEAHN+ + +I+R+ +E
Sbjct: 146 DVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE-ADKWFTRKISRKMLE 204
Query: 138 KAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQE 197
+A+ I+ ++ + D+ K+++ L++ + + P+ E E
Sbjct: 205 RALKEIE----IVERLNRIDAKKVKDYINLLIDYMSKLIKDGRCHELSLMPLPDRETNGE 260
Query: 198 VV 199
++
Sbjct: 261 LI 262
Score = 99.3 bits (247), Expect = 1e-21
Identities = 32/179 (17%), Positives = 66/179 (36%), Gaps = 17/179 (9%)
Query: 678 RDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCPYFLARQAIIHA 737
D N C +K + + P ++E + CPY+ R +
Sbjct: 93 GDEEPDEINCSKCRLKDKIKTIEDKEPS-------KLIEEFKDAVDYCPYYSLRANLKDK 145
Query: 738 KIVVYSYHYLLDPKIANVVSKELA-----RSSVVVFDEAHNIDNVCVDSLSVRINRRTIE 792
++ +Y YL I N V ++V DEAHN+ + +I+R+ +E
Sbjct: 146 DVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE-ADKWFTRKISRKMLE 204
Query: 793 KAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQ 851
+A+ I+ ++ + D+ K+++ L++ + + P+ E
Sbjct: 205 RALKEIE----IVERLNRIDAKKVKDYINLLIDYMSKLIKDGRCHELSLMPLPDRETNG 259
Score = 84.6 bits (209), Expect = 4e-17
Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 19/109 (17%)
Query: 434 FFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKL 493
+ Q + E AL LL G GKT + L + K+
Sbjct: 3 VLKLQL-RQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKK-------KV 54
Query: 494 LYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSE 542
L +RT +++ + + L + L + CI+++
Sbjct: 55 LIFTRTHSQLDSIYKNAKLL-----------GLKTGFLIGKSASCIYAQ 92
Score = 64.2 bits (156), Expect = 1e-10
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 584 FETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLL 643
E R S I Y LL I V+ FF SY LESV +I+ + +K
Sbjct: 360 SELRKRNSNIPIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSGIPVIE--ENKKTR 417
Query: 644 FIETQDALDSR 654
E + + +
Sbjct: 418 HEEVLELMKTG 428
Score = 58.8 bits (142), Expect = 6e-09
Identities = 49/348 (14%), Positives = 95/348 (27%), Gaps = 50/348 (14%)
Query: 132 NRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV-----EGLRDAQSARETDVVLA 186
++ + L+ +K +++ + +KL EE+ V LR ++ DV+
Sbjct: 93 GDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRAN--LKDKDVIAM 150
Query: 187 N-PVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFLKDISSKP 245
P L + ++ V N +L E + F + IS K
Sbjct: 151 TYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADK--------WFTRKISRKM 202
Query: 246 APSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATFLKD-ISSKVCIERKPLRFCAERLA 304
+ E K ++ + + +KD ++ + P R L
Sbjct: 203 LERALKEIEIVERLNRIDAKKVKDYINLLIDYMSKLIKDGRCHELSLMPLPDRETNGELI 262
Query: 305 SLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDS 364
+ R + + L V + N L D
Sbjct: 263 VVTRAYLNIDEG-PVKKSSLKSLLKFVEMKGDLYN-------------CNGSLVKVPSDV 308
Query: 365 SLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLPMVRENYAM 424
+ I+ + V+ SGTL + P + +R+ +
Sbjct: 309 NQLIEDALNVKTFKVLMSGTLPESLTLTNSYKIVVNESYGRGEYYYCPNVTSELRKRNSN 368
Query: 425 GLMIDDLP------------VFFPYEYIYPEQYAYMVELKKALDAKGH 460
+ L VFFP Y + ++ L
Sbjct: 369 IPIYSILLKRIYENSSKSVLVFFP-------SYEMLESVRIHLSGIPV 409
Score = 55.0 bits (132), Expect = 7e-08
Identities = 21/56 (37%), Positives = 23/56 (41%)
Query: 538 CIHSEFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRDDISVI 593
C + E R S I Y LL I V+ FF SY LESV I VI
Sbjct: 355 CPNVTSELRKRNSNIPIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSGIPVI 410
Score = 47.3 bits (112), Expect = 2e-05
Identities = 4/28 (14%), Positives = 8/28 (28%)
Query: 852 GKTDYGIMIFADKRFARSDKRSKLPKWI 879
DY + D R+ + +
Sbjct: 508 DPNDYVKIYLCDSRYREYFADLGISEKE 535
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.0 bits (160), Expect = 4e-11
Identities = 104/678 (15%), Positives = 213/678 (31%), Gaps = 209/678 (30%)
Query: 15 HSLTSSSVRDRHKAGENIPVC--DFYEKFDAVGREAPLAP-GVYSITKLKEM----GREL 67
H + + +++ + + V F + FD ++ P + S ++ +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDC--KDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 68 GLCPYFL-----ARQAIIHAKIVV----YSYHYLLDPKIANVVSKELARSSV--VVFDEA 116
G L ++Q + K V +Y +L+ P + E + S+ ++ E
Sbjct: 63 GT--LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-----IKTEQRQPSMMTRMYIEQ 115
Query: 117 HNI---DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 173
+ DN +V +R + ++ L E++ + L++G+
Sbjct: 116 RDRLYNDNQVFAKYNV--SR---LQPYLKLRQ---ALLELR-------PAKNV-LIDGVL 159
Query: 174 DA-QSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQE 232
+ ++ +A V +Q + I ++ +T L + Q
Sbjct: 160 GSGKT------WVALDVCLSYKVQCKMDFKI----FWLNLKNCNSP--ETVLEMLQ---- 203
Query: 233 SPATFLKDISSKPAPSMISEAYRYIFSTEEHLKTRLRVQQVVQESPATF--LKDISSKVC 290
L I S + ++ LR + L ++ +
Sbjct: 204 ---KLLYQI-DPNWTSRSDHSSNIKLRIHS-IQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 291 IERKPLRF---CAERLASLLRTLEIT---NLTDFSSLVVITHLA------TLVSSYTKGF 338
F C + L T +TDF S TH++ TL K
Sbjct: 259 WN----AFNLSC--------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 339 ------------------------AIIVEPFSDKAPTVPNPVLYFCC------LDSSLA- 367
+II E D T + + C ++SSL
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKLTTIIESSLNV 365
Query: 368 -----IKPVFDRF----QTVVITSGTLSPL--DMYP----KILNFQPVIMHSFSMTLARP 412
+ +FDR + I + LS + D+ ++N +H +S+ +P
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK----LHKYSLVEKQP 421
Query: 413 C------------LLPMVRENYAM-GLMID--DLPVFFPYEYIYPEQ-----YAYMVELK 452
L + YA+ ++D ++P F + + P Y+++
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI---- 477
Query: 453 KALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELAR 512
GH L + + +L ++ +++ L+ K+ + S ++ L +
Sbjct: 478 ------GHHLKNI--EHPERMTLFRMV--FLDFRFLEQ-KIRHDSTAWNASGSILNTLQQ 526
Query: 513 LFDY--YIKHNEEINMTGLVLSSRKNL------CIHSEFETRDDISVIRNYGQLLVDIAC 564
L Y YI N+ LV + L I S++ D L+ IA
Sbjct: 527 LKFYKPYICDNDPKY-ERLVNAILDFLPKIEENLICSKY--TD-----------LLRIAL 572
Query: 565 VVPDGVVCFFTSYLYLES 582
+ D ++ E+
Sbjct: 573 MAEDE-------AIFEEA 583
Score = 60.6 bits (146), Expect = 2e-09
Identities = 92/638 (14%), Positives = 182/638 (28%), Gaps = 195/638 (30%)
Query: 326 HLATLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCCLDSSLAIKPVFDR--FQTVVITSG 383
H+ + + I+ F D V F C D K + + ++++
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAF------VDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 384 TLSPLD-MYPKILNFQPVIMHSFSMTLARP------------CLLP-MVRENY--AMGLM 427
+S ++ +L+ Q ++ F + R P M+ Y +
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 428 IDDLPVFFPYEYIYPEQYAYMVELKKAL----DAKGHCLLEMPSGTGKTTSLLSLIVAYM 483
+D VF Y + Y +L++AL AK + + G+GKT + +
Sbjct: 120 YNDNQVFAKYNVSRLQPYL---KLRQALLELRPAKNVLIDGVL-GSGKTW----VALDVC 171
Query: 484 NAHPLDVT--------KLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRK 535
++ + L C+ E V+E L +L Y I N SS
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSP----ETVLEMLQKLL-YQIDPNWTSRSDH---SSNI 223
Query: 536 NLCIHSEFETRDDISVIRNYGQ-LLV-------------DIACVVPDGVVCFFTSYLYLE 581
L IHS + + Y LLV +++C +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI--------------- 268
Query: 582 SVFETRDDISVIRNYGQLLVDIACVVP-DGVVCFFTSYLYLESVVASWYDQGIID----- 635
+ TR V L + D T ++S++ + D D
Sbjct: 269 -LLTTRF-KQVTD---FLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREV 322
Query: 636 ---NLQKRKLLFIETQDALDS----RSVSKERDGKIVDGRCHSLTSSSVRDRHKA----- 683
N ++ ++ +D L + + V+ ++ I++ + L + R
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 684 -GENIP-------------------VCDFYEKFDAVGREAPLAPGVYSIT-KLKEMGREL 722
+IP V ++ + + SI +LK
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN- 441
Query: 723 GLCPYFLARQAIIHAKIV--------------------VYSYHYL--------------- 747
+ +H IV Y Y ++
Sbjct: 442 ---------EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 748 ----------LDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGN 797
L+ KI + + A S++ N ++ + I
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSIL---------NTLQQ---LKFYKPYICDNDPK 540
Query: 798 IQTLEGTLKE-MKEADSAKLREEYARLVE-GLRDAQSA 833
+ L + + + + + + +Y L+ L A
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Score = 53.3 bits (127), Expect = 3e-07
Identities = 58/394 (14%), Positives = 114/394 (28%), Gaps = 99/394 (25%)
Query: 102 SKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKL 161
SK +V + NV N + + + L T + + D
Sbjct: 240 SKPYENCLLV-------LLNVQ--------NAKAWNAFNLSCKILLTT-RFKQVTDFLSA 283
Query: 162 REEYARLVEGLRDAQSARETDVVLANPV------LPDEILQEVVPGNIRT-AEHFVGFLK 214
++ + E +L + LP E+L P + AE L
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-TNPRRLSIIAESIRDGLA 342
Query: 215 RFIEYLKTRL-RVQQVVQESPATFLKDISSKPAPSMISEAYRY--IFSTEEHLKTR-LRV 270
+ + ++ +++ S L + P+ + + +F H+ T L +
Sbjct: 343 TWDNWKHVNCDKLTTIIESS----LNVLE----PAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 271 --QQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLA 328
V++ + + +E++P + S+ L++ +++ H
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKES-TISIPSIYLELKVKLENEYA-----LH-R 447
Query: 329 TLVSSYTKGFAIIVEPFSDKAPTVPNPVLYFCC-----------LDSSLAIKPVF-D-RF 375
++V Y I + F P YF + + VF D RF
Sbjct: 448 SIVDHYN-----IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 376 -QTVVITSG-----------TLSPLDMYPK-ILNFQPV-------IMHSFSMTLARPCLL 415
+ + TL L Y I + P I+ F +
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD-FLPKIEENL-- 559
Query: 416 PMVRENYA----MGLMIDDLPVFFPYEYIYPEQY 445
+ Y + LM E I+ E +
Sbjct: 560 --ICSKYTDLLRIALM-------AEDEAIFEEAH 584
Score = 47.2 bits (111), Expect = 3e-05
Identities = 59/433 (13%), Positives = 132/433 (30%), Gaps = 130/433 (30%)
Query: 540 HSEFET-------RDDISVIRNYGQLLVDIACV-VPDGVVCFFTSYLYLESVFETRDDIS 591
H +FET +D +SV + + + C V D + + + ++D +S
Sbjct: 6 HMDFETGEHQYQYKDILSVFED--AFVDNFDCKDVQDMPKSILSKEEI-DHIIMSKDAVS 62
Query: 592 VIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDAL 651
L + +V ++E V+ Y ++ ++ + Q ++
Sbjct: 63 GTL----RLFWTLLSKQEEMV-----QKFVEEVLRINYKF-LMSPIKTE-----QRQPSM 107
Query: 652 DSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYS 711
+R ++RD R ++ + + V R P
Sbjct: 108 MTRMYIEQRD------RLYN-DNQVFAKYN-----------------VSRLQP------- 136
Query: 712 ITKLKEMGRELGLCPYFLARQAIIHAKIVVY-------SYHYLLDPKIANVVSKELARSS 764
KL++ EL R +++ + V+ ++ S
Sbjct: 137 YLKLRQALLEL--------RP---AKNVLIDGVLGSGKT-----------WVALDVCLSY 174
Query: 765 VVV---FDEAH--NIDNVCVD--------SLSVRINRRTIEKAVGNIQTLEGTLKEMKEA 811
V + N+ N L +I+ ++ + ++ + ++
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS-DHSSNIKLRIHSIQAE 233
Query: 812 DSAKLREE-YAR--LVEGLRDAQSARETDVVLANPVLPDEILQGKTDYGIMIFADK---R 865
L+ + Y LV L + Q+A+ + + L K ++ K
Sbjct: 234 LRRLLKSKPYENCLLV--LLNVQNAKAWNAF-------N--LSCKI---LLTTRFKQVTD 279
Query: 866 FARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLD- 924
F + + + L + L+ +E L ++L Q RE +L L
Sbjct: 280 FLSAATTTHIS------LDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-VLTTNPRRLSI 332
Query: 925 --QLLEKEHARAE 935
+ + A +
Sbjct: 333 IAESIRDGLATWD 345
Score = 44.8 bits (105), Expect = 1e-04
Identities = 46/298 (15%), Positives = 102/298 (34%), Gaps = 74/298 (24%)
Query: 670 HSLTSSSVRDRHKAGENIPVC--DFYEKFDAVGREAPLAP-GVYSITKLKEM----GREL 722
H + + +++ + + V F + FD ++ P + S ++ +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDC--KDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 723 GLCPYFL-----ARQAIIHAKIVV----YSYHYLLDPKIANVVSKELARSSV--VVFDEA 771
G L ++Q + K V +Y +L+ P + E + S+ ++ E
Sbjct: 63 GT--LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-----IKTEQRQPSMMTRMYIEQ 115
Query: 772 HNI---DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLR 828
+ DN +V +R + ++ L E++ + L++G+
Sbjct: 116 RDRLYNDNQVFAKYNV--SR---LQPYLKLRQ---ALLELR-------PAKNV-LIDGVL 159
Query: 829 DA-QSARETDVVLANPVLPDEILQGKTDYGI--MIFADKRFARS--DKRSKL-----PKW 878
+ ++ +A V +Q K D+ I + + + + KL P W
Sbjct: 160 GSGKT------WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 879 IQEYLTDNLTN--LSTEEAVQLSKRWLRQMAQPFTREDMLGVALLSLDQLLEKEHARA 934
+D+ +N L +R L+ +P+ LL L + + A
Sbjct: 214 TS--RSDHSSNIKLRIHSIQAELRRLLKS--KPYEN------CLLVLLNVQNAKAWNA 261
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.2 bits (148), Expect = 2e-09
Identities = 77/479 (16%), Positives = 147/479 (30%), Gaps = 159/479 (33%)
Query: 72 YFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELAR---------SSVVVFDE---AHNI 119
Y AR AK + + V + A+ ++ F+E +
Sbjct: 126 YITARIM---AKRPFDKKS---NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 120 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 179
+V V L I+ + +TL ++ D+ K+ + ++E L + +
Sbjct: 180 YHVLVGDL--------IKFS---AETLSELIRT--TLDAEKVFTQGLNILEWLENPSNTP 226
Query: 180 ETDVVLANPV-LP-DEILQ----EVV-------PGNIR---------------------- 204
+ D +L+ P+ P ++Q V PG +R
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 205 -TAEHFVGFLKRFIEYL-KTRLRVQQVVQES--PATFLKDISS----KPAPSMIS----- 251
+ E F +++ I L +R + + P + L+D P+P M+S
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP-MLSISNLT 345
Query: 252 --EAYRYIFSTEEHLKTRLRVQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRT 309
+ Y+ T HL +V+ + + V + L L LR
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV------VSGPPQSLY----GLNLTLRK 395
Query: 310 LEITNLTDFSSLVVITHLATLVSSYTKGFAIIVEPFSDKAPTVPN---PVL--YFCCLDS 364
+ + D S + PFS++ N PV + S
Sbjct: 396 AKAPSGLDQSRI----------------------PFSERKLKFSNRFLPVASPFH----S 429
Query: 365 SLAIKPVFDRFQTVVITSG-TLSPLDMYPKILNFQPVIMHSFS---MTLARPCLLPMVRE 420
L + P D ++ + + + D+ +I PV +F + + + + +
Sbjct: 430 HL-LVPASDLINKDLVKNNVSFNAKDI--QI----PVY-DTFDGSDLRVLSGSISERIVD 481
Query: 421 NYAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLI 479
I LPV + K +L+ G G + L L
Sbjct: 482 ------CIIRLPVKWE----------------TTTQFKATHILDF--GPGGASGLGVLT 516
Score = 59.7 bits (144), Expect = 4e-09
Identities = 99/662 (14%), Positives = 178/662 (26%), Gaps = 286/662 (43%)
Query: 161 LREEY-ARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFL------ 213
L+E++ L E + E P P E++ F+G++
Sbjct: 33 LQEQFNKILPEPTEGFAADDE-------PTTPAELV-----------GKFLGYVSSLVEP 74
Query: 214 ---KRFIEYLKTRLR---------------VQQVVQESPATFLKDIS------------- 242
+F + L L +++QE+ T +K
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 243 ---SKPAPSMISEAYR------Y-IF----STEEHLKTRLRVQQVVQESPATFLKDISSK 288
K + S + A IF +T+++ + LR + ++ + D+
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE-ELR---DLYQTYHVLVGDL--- 187
Query: 289 VCIERKPLRFCAERLASLLRTLEITNLTDFSSLVVITHLATLVSSYTKGFAI---IVEPF 345
++F AE L+ L+RT D + +T+G I + P
Sbjct: 188 -------IKFSAETLSELIRTTL-----DAEKV------------FTQGLNILEWLENP- 222
Query: 346 SDKAPTVPNPVLYFCCLDSSLAIKPV-----FDRFQTVVITSGTLSPLDMYPKILNFQPV 400
P Y + S P+ + G +P ++ +
Sbjct: 223 -SNTP----DKDYLLSIPISC---PLIGVIQLAHYVVTAKLLG-FTPGELRS---YLKGA 270
Query: 401 IMHSFSMTLARPCLLPMVRENY------AMGLMIDDLPVF---------FPYEYIYPEQY 445
HS + A E++ A+ ++ F +P + P
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVL------FFIGVRCYEAYPNTSLPPSIL 324
Query: 446 AYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEK 505
+E + G + +LS ++ L T +++
Sbjct: 325 EDSLE----------------NNEGVPSPMLS------------ISNL-----TQEQVQD 351
Query: 506 VVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVI---RNYGQLLVDI 562
V + N L + K + IS++ +N
Sbjct: 352 YVNKT----------NSH-------LPAGKQ--VE--------ISLVNGAKNL------- 377
Query: 563 ACVVPDGVVCFFTSYLY-----LESVF-ETRDDISVI-------RNYGQLLVDIACVVPD 609
VV LY L + D S I + + L +A P
Sbjct: 378 -------VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP-VA--SP- 426
Query: 610 GVVCFFTSYLYLESVVASWYDQGIIDNLQKRKLLF---------IETQDALDSRSVSKER 660
F + L I +L K + F +T D D R +S
Sbjct: 427 ----FHSH--LLVPAS-----DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI 475
Query: 661 DGKIVD----GRCH--SLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYS-IT 713
+IVD + T H + DF G PG S +
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKA--TH-------ILDF-------G------PGGASGLG 513
Query: 714 KL 715
L
Sbjct: 514 VL 515
Score = 58.5 bits (141), Expect = 1e-08
Identities = 109/646 (16%), Positives = 189/646 (29%), Gaps = 257/646 (39%)
Query: 364 SSLAIKPVFDRFQTVVITSGTLS-----PLDMYPKILNFQPVIMHSFSMTLARPCLLPMV 418
+ + +P+ ++ G+L P + + F+ L P
Sbjct: 2 DAYSTRPL-------TLSHGSLEHVLLVPTASFF----IASQLQEQFNKILPEP------ 44
Query: 419 RENYAMGLMIDDLPV--------FFPY--EYIYPEQYAYMVE-LKKALDA------KG-- 459
E +A DD P F Y + P + + L L +G
Sbjct: 45 TEGFAA----DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND 100
Query: 460 -HCLL-EMPSGTGKT-TSLLSLIVAYMNA-----HPLD---VTKLLYCSRTVPE------ 502
H L ++ T LI Y+ A P D + L R V E
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF---RAVGEGNAQLV 157
Query: 503 --------IEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRN 554
+ EEL L+ Y + L+ S + L R + +
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGD-----LIKFSAETL----SELIRTTLDAEKV 208
Query: 555 YGQLLVDI------ACVVPDGVVCFFTSYLYLESVFETRDDISV--IRNYGQLLVDIACV 606
+ Q L +I PD YL S+ IS I G ++ +A
Sbjct: 209 FTQGL-NILEWLENPSNTPDK--------DYLLSIP-----ISCPLI---G--VIQLAHY 249
Query: 607 VPDGVVC--------FFTSYL-----YLESVVA--------SWYDQGIIDNLQK--RKLL 643
V V SYL + + +V SW + +++K L
Sbjct: 250 V---VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW--ESFFVSVRKAITVLF 304
Query: 644 FIETQDALDSRSVSKERDGKIVDG-RCH------SLTSSSVRDRHKAGENIP-----VCD 691
FI G RC+ SL S + D + E +P + +
Sbjct: 305 FI---------------------GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 692 ----FYEKF-DAVGREAPLAPGVY-S---------ITKLKEMG--REL-GLCPYFLARQA 733
+ + + P V S ++ G + L GL +A
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS-----GPPQSLYGLNLTLRKAKA 398
Query: 734 --------IIHA--KIVVYS--------YH-YLLDPKIANVVSKELARSSVV-------- 766
I + K+ + +H +LL P +++++K+L +++V
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP-ASDLINKDLVKNNVSFNAKDIQI 457
Query: 767 -VFD--EAHNI---DNVCVDSLSVRINRRTI--EKAVGNIQT--LE---GTLKEMKEADS 813
V+D + ++ + + I R + E T L+ G +
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL----- 512
Query: 814 AKLREEYARLVEGLRDAQSARETDVVLANPV--LPDEILQGKTDYG 857
L +D R V++A + PD+ DYG
Sbjct: 513 -------GVLTHRNKDGTGVR---VIVAGTLDINPDD------DYG 542
Score = 57.0 bits (137), Expect = 3e-08
Identities = 61/354 (17%), Positives = 109/354 (30%), Gaps = 132/354 (37%)
Query: 494 LYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNLCIHSEFETRDDISVIR 553
LY +T + V A D + K ++ +V+++ NL IH F +
Sbjct: 1635 LY--KTSKAAQDVWNR-A---DNHFKDTYGFSILDIVINNPVNLTIH--FGGEKGKRIRE 1686
Query: 554 NYGQLLVDIACVVPDGVVCFFTSYLYLESVFETRD-DISVIRNYGQLLVDIACVVPDGVV 612
NY ++ + + DG + E +F+ + + G +
Sbjct: 1687 NYSAMIFE---TIVDGKLKT-------EKIFKEINEHSTSYTFRS----------EKG-L 1725
Query: 613 CFFTSYLYLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVS-----KERDGKIVDG 667
T + TQ AL + K + G I
Sbjct: 1726 LSATQF----------------------------TQPALTLMEKAAFEDLKSK-GLIPAD 1756
Query: 668 RC---HSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSIT---KL-KEMGR 720
HSL GE + A+ A LA V SI ++ G
Sbjct: 1757 ATFAGHSL-----------GE----------YAAL---ASLA-DVMSIESLVEVVFYRGM 1791
Query: 721 ---------ELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEA 771
ELG Y + AI ++ + VV + R+ +V E
Sbjct: 1792 TMQVAVPRDELGRSNYGMI--AINPGRVAA----SFSQEALQYVVERVGKRTGWLV--EI 1843
Query: 772 --HNIDN---VC------VDSLSVRINRRTIEKAVGNIQTLE----GTLKEMKE 810
+N++N V +D+++ +N + I +E +L+E++
Sbjct: 1844 VNYNVENQQYVAAGDLRALDTVTNVLN----FIKLQKIDIIELQKSLSLEEVEG 1893
Score = 51.2 bits (122), Expect = 2e-06
Identities = 62/346 (17%), Positives = 96/346 (27%), Gaps = 131/346 (37%)
Query: 103 KELARSSVV---VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSA 159
+L ++S V++ A DN D+ I + N+ G K
Sbjct: 1633 MDLYKTSKAAQDVWNRA---DNHFKDTYGFSI-LDIVINNPVNLTIHFGGEK------GK 1682
Query: 160 KLREEYARLV-EGLRDAQSARETDVVLANPVLP--DEILQEVVPGNIRTAEHFVGFLKRF 216
++RE Y+ ++ E + D + E + +E T G L
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTE-------KIFKEINEHSTSY------TFRSEKGLLSA- 1728
Query: 217 IEYLKTRLRVQQVVQESPATFL------KDISSK---PAPSMI---S--EAYRY------ 256
T Q Q PA L +D+ SK PA + S E Y
Sbjct: 1729 -----T-----QFTQ--PALTLMEKAAFEDLKSKGLIPADATFAGHSLGE---YAALASL 1773
Query: 257 --IFSTEEHLKT-RLR---VQQVVQESPATFLKDISSKVCIERKPLRFCAERLASLLRTL 310
+ S E ++ R +Q V + R F E L ++
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER- 1832
Query: 311 EITNLTDFSSLVVITHLATLVSSYTKGFAIIVEP--FSDKAPTVPNPVLYFCCLDSSLAI 368
V T VE ++ V N
Sbjct: 1833 --------------------VGKRTGWL---VEIVNYN-----VEN-------------- 1850
Query: 369 KPVFDRFQTVVITSGTLSPLDMYPKILNF---QPV----IMHSFSM 407
Q V +G L LD +LNF Q + + S S+
Sbjct: 1851 -------QQYVA-AGDLRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
Score = 44.7 bits (105), Expect = 2e-04
Identities = 38/218 (17%), Positives = 70/218 (32%), Gaps = 53/218 (24%)
Query: 758 KELARSSVV---VFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSA 814
+L ++S V++ A DN D+ I + N+ G K
Sbjct: 1633 MDLYKTSKAAQDVWNRA---DNHFKDTYGFSI-LDIVINNPVNLTIHFGGEK------GK 1682
Query: 815 KLREEYARLV-EGLRDAQSARETDVVLANPVL-------PDEILQGKTDY--------GI 858
++RE Y+ ++ E + D + E N +L T +
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS-ATQFTQPALTLMEK 1741
Query: 859 MIFADKRFARSDKRSKLPKWIQ-------EY--LTDNLTN-LSTEEAVQL-SKR-WLRQM 906
F D + + +P EY L +L + +S E V++ R Q+
Sbjct: 1742 AAFEDLK-----SKGLIPADATFAGHSLGEYAALA-SLADVMSIESLVEVVFYRGMTMQV 1795
Query: 907 AQPF-----TREDMLGVALLSLDQLLEKEHARAEEEEV 939
A P + M+ + + +E + E V
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Score = 44.3 bits (104), Expect = 2e-04
Identities = 71/487 (14%), Positives = 141/487 (28%), Gaps = 175/487 (35%)
Query: 545 TRDDISVIRNYGQLLVDIACVVPDGVVCF-------FTSYLYLESVFETRDD--ISVIRN 595
TR + ++G L + +VP F L + DD +
Sbjct: 6 TR---PLTLSHGSLEHVL--LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 596 YGQLLVDIACVVPDG------------VVCFFTSYLYLE---SVVASWYDQGIIDNLQKR 640
G+ L ++ +V + F YL ++ A + ++ +
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 641 KLLFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVG 700
+L+ ++ + +R ++K K ++S++ G F G
Sbjct: 121 ELI----KNYITARIMAKRPFDKK--------SNSALFRAVGEGNA----QLVAIF---G 161
Query: 701 REAPLAPG-----VYSITKLKEMGRELGLCPYFLARQAIIHAKIVVY-SYHYLLDPKIAN 754
G Y +E+ R+L Y +YH L+ I
Sbjct: 162 -------GQGNTDDY----FEEL-RDL-------------------YQTYHVLVGDLIKF 190
Query: 755 VVS--KELARSSV---VVF-------------DEAHNIDNVCVDSLSV-----------R 785
EL R+++ VF + D + +S
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
Query: 786 INRRTIEKAVGNI-QTLEGTLKEMK---------EADSAK-LREEYARLVE-----GLRD 829
+ + + G + L+G + E DS + + + G+R
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR- 309
Query: 830 AQSARETDVVLANPVLPDEILQGKTDYGI-----MIFADKRFA-RSDKRSKLPKWIQEYL 883
A N LP IL+ + M + + + ++ ++ +
Sbjct: 310 CYEAY------PNTSLPPSILEDSLENNEGVPSPM------LSISNLTQEQVQDYVNK-- 355
Query: 884 TDNLTN--LSTEEAVQLSKRWLRQMAQPFTREDMLGV------ALLSLDQLLEKEHARAE 935
TN L + V++S L A+ V +L L+ L K A +
Sbjct: 356 ----TNSHLPAGKQVEIS---LVNGAKNL-------VVSGPPQSLYGLNLTLRKAKAPSG 401
Query: 936 EE--EVP 940
+ +P
Sbjct: 402 LDQSRIP 408
Score = 43.5 bits (102), Expect = 3e-04
Identities = 60/348 (17%), Positives = 100/348 (28%), Gaps = 136/348 (39%)
Query: 357 LYFCCLDSSLAIKPVFDRFQTVVITSGTLSPLDMYPKILNFQPVIMHSFSMTLARPCLLP 416
LY +S A + V++R D Y FS +L
Sbjct: 1635 LY----KTSKAAQDVWNR--------ADNHFKDTY------------GFS-------ILD 1663
Query: 417 MVRENYAMGLMIDDLPVFFPYE---YIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTT 473
+V N +L + F E I E Y+ M+ + +D K +T
Sbjct: 1664 IVINNPV------NLTIHFGGEKGKRIR-ENYSAMI-FETIVDGKLKTEKIFKEINEHST 1715
Query: 474 SLLSLIVAYMNAHP---LDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLV 530
S Y L T T P + + E A F E++ GL+
Sbjct: 1716 S-------YTFRSEKGLLSAT-----QFTQPAL--TLMEKA-AF-------EDLKSKGLI 1753
Query: 531 LSSRKNLCIHS--E------------FETRDDISVIRNYGQLL-------------VDIA 563
+ HS E E + V+ G + +
Sbjct: 1754 -PADATFAGHSLGEYAALASLADVMSIE--SLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 564 CVVPDGVVCFFTSYLYLESVFETRDDISVIRNYGQLLVDIACV-VPDGVVCFFTSYLYLE 622
+ P V F+ E++ + + + G LV+I V +
Sbjct: 1811 AINPGRVAASFS----QEALQYVVERVG--KRTGW-LVEIVNYNVENQQY---------- 1853
Query: 623 SVVASWYDQG----------IIDNLQKRKLLFIETQDALDSRSVSKER 660
V A G +++ ++ +K+ IE Q S+S E
Sbjct: 1854 -VAA-----GDLRALDTVTNVLNFIKLQKIDIIELQK-----SLSLEE 1890
Score = 43.1 bits (101), Expect = 5e-04
Identities = 53/293 (18%), Positives = 85/293 (29%), Gaps = 119/293 (40%)
Query: 63 MGRELGLCPYFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELARSSVVVFDEAHNIDNV 122
MG +L Y + + A+ V++ A DN
Sbjct: 1631 MGMDL-------------------YK-------------TSKAAQD---VWNRA---DNH 1652
Query: 123 CVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLV-EGLRDAQSARET 181
D+ I + N+ G K ++RE Y+ ++ E + D + E
Sbjct: 1653 FKDTYGFSI-LDIVINNPVNLTIHFGGEK------GKRIRENYSAMIFETIVDGKLKTE- 1704
Query: 182 DVVLANPVLP--DEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQESPATFL- 238
+ +E T G L T Q Q PA L
Sbjct: 1705 ------KIFKEINEHSTSY------TFRSEKGLLSA------T-----QFTQ--PALTLM 1739
Query: 239 -----KDISSK---PAPSMI---S--EAYRY--------IFSTEEHLKT-RLR---VQQV 273
+D+ SK PA + S E Y + S E ++ R +Q
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLGE---YAALASLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 274 VQESP---------ATFLKDISSKVCIERKPLRFCAERLASLLRT---LEITN 314
V A +++ E L++ ER+ RT +EI N
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEA--LQYVVERVGK--RTGWLVEIVN 1845
Score = 41.2 bits (96), Expect = 0.002
Identities = 57/392 (14%), Positives = 116/392 (29%), Gaps = 141/392 (35%)
Query: 608 PDGVVCFFTSYL-YLESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKERDGKIVD 666
P +L Y+ S+V G D + L E L+ +
Sbjct: 54 PTTPAELVGKFLGYVSSLV-EPSKVGQFDQVLNLCLTEFE-NCYLEGNDI---------- 101
Query: 667 GRCHSLTSSSVRDRHKAGENIPVCDFYEKFDAVGREAPLAPGVYSITKLKEMGRELGLCP 726
H+L + +++ ++ K KE+ +
Sbjct: 102 ---HALAAKLLQENDT----------------------------TLVKTKELIKN----- 125
Query: 727 YFLARQAIIHAKIVVYSYHYLLDPKIANVVSKELAR---------SSVVVFDE---AHNI 774
Y AR AK + + V + A+ ++ F+E +
Sbjct: 126 YITARIM---AKRPFDKKS---NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 775 DNVCVDSLSVRINRRTIEKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSAR 834
+V V L I+ + +TL ++ D+ K+ + ++E L + +
Sbjct: 180 YHVLVGDL--------IKFS---AETLSELIRT--TLDAEKVFTQGLNILEWLENPSNTP 226
Query: 835 ETDVVLANPV-LP------------------------DEILQGKTDYGIMIFADKRFARS 869
+ D +L+ P+ P L+G T + + A +
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 870 DKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRW--LR-QMAQPFT------RED------ 914
D W E + +A+ + + +R A P T ED
Sbjct: 287 DS------W--ESFFVS-----VRKAITVL-FFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 915 -----MLGVALLSLDQLLEKEHARAEEEEVPR 941
ML ++ L+ +Q+ +++ +P
Sbjct: 333 GVPSPMLSISNLTQEQV--QDYVNKTNSHLPA 362
Score = 33.9 bits (77), Expect = 0.33
Identities = 41/248 (16%), Positives = 79/248 (31%), Gaps = 100/248 (40%)
Query: 13 RCH------SLTSSSVRDRHKAGENIP-----VCD----FYEKF-DAVGREAPLAPGVY- 55
RC+ SL S + D + E +P + + + + + P V
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 56 S---------ITKLKEMG--REL-GLCPYFLARQA--------IIHA--KIVVYS----- 88
S ++ G + L GL +A I + K+ +
Sbjct: 369 SLVNGAKNLVVS-----GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV 423
Query: 89 ---YH-YLLDPKIANVVSKELARSSVVVFDEAHNIDNVCVDSLSVRINRRTIEKAVGNIQ 144
+H +LL P +++++K+L + +NV ++ ++I V
Sbjct: 424 ASPFHSHLLVP-ASDLINKDLVK------------NNVSFNAKDIQI-------PV--YD 461
Query: 145 TLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIR 204
T +G +D LR + E + D ++ PV + Q
Sbjct: 462 TFDG-------SD---LRVLSGSISERI--------VDCIIRLPVKWETTTQF------- 496
Query: 205 TAEHFVGF 212
A H + F
Sbjct: 497 KATHILDF 504
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.041
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 137 EKAVGNIQTLEGTLKEMKEADSA 159
EK ++ L+ +LK + DSA
Sbjct: 18 EKQ--ALKKLQASLK-LYADDSA 37
Score = 34.9 bits (79), Expect = 0.041
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 792 EKAVGNIQTLEGTLKEMKEADSA 814
EK ++ L+ +LK + DSA
Sbjct: 18 EKQ--ALKKLQASLK-LYADDSA 37
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1,
signaling protein, low PH, alternative splicing,
cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus}
PDB: 2ikq_A 2h0q_A
Length = 264
Score = 30.4 bits (68), Expect = 2.2
Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 23/117 (19%)
Query: 798 IQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARETDVVLANPVLPDEILQGKTDYG 857
+QT LK +++ + K+R E GL + + +P L +
Sbjct: 92 VQTAHNILKGLQQDNHLKIRVEP-----GLFEWTKWVAGSTL--PAWIPPSELAAA-NLS 143
Query: 858 IMIFADKRFARSDKRSKLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTRED 914
+ D + SKL E S + + S + +++ +
Sbjct: 144 V----DTTYRPHIPVSKLAIS--E---------SYDTYINRSFQVTKEIISECKSKG 185
Score = 28.4 bits (63), Expect = 10.0
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 143 IQTLEGTLKEMKEADSAKLREEY 165
+QT LK +++ + K+R E
Sbjct: 92 VQTAHNILKGLQQDNHLKIRVEP 114
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 2.5
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 26/92 (28%)
Query: 155 EADSA-KLREEYA-RLVEGLRDAQSARETDVVLANPVLPDEILQEVVPGNIRTAEHFV-G 211
E +S K REE RL E DA S E ++ A+ +
Sbjct: 83 EPESIRKWREEQRKRLQE--LDAASKVME----------QEWREK--------AKKDLEE 122
Query: 212 FLKRFIEYLKTRLRVQQVVQESPATFLKDISS 243
+ +R E ++ + + + + F + +
Sbjct: 123 WNQRQSEQVE---KNKINNRIADKAFYQQPDA 151
Score = 29.7 bits (66), Expect = 2.8
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 810 EADSA-KLREEYA-RLVEGLRDAQSARE 835
E +S K REE RL E DA S
Sbjct: 83 EPESIRKWREEQRKRLQE--LDAASKVM 108
Score = 29.7 bits (66), Expect = 3.2
Identities = 11/80 (13%), Positives = 22/80 (27%), Gaps = 34/80 (42%)
Query: 863 DKRFARSDKRS--KLPKWIQEYLTDNLTNLSTEEAVQLSKRWLRQMAQPFTREDMLGVAL 920
KR D S +W E+A + + W ++ + + +
Sbjct: 95 RKRLQELDAASKVMEQEWR-------------EKAKKDLEEWNQR------QSEQV---- 131
Query: 921 LSLDQLLEKEHA--RAEEEE 938
EK R ++
Sbjct: 132 -------EKNKINNRIADKA 144
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 30.5 bits (69), Expect = 3.4
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 454 ALDAKGHCLLEMPSGTGKTT 473
A + L P G K+
Sbjct: 37 AALSGESVFLLGPPGIAKSL 56
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 30.3 bits (67), Expect = 3.7
Identities = 18/83 (21%), Positives = 31/83 (37%)
Query: 825 EGLRDAQSARETDVVLANPVLPDEILQGKTDYGIMIFADKRFARSDKRSKLPKWIQEYLT 884
E L + + V A LPDE + ++Y FA F + S + +++ L
Sbjct: 4 EDLERGRREMVEEDVDAALPLPDEDEEDLSEYKFAKFAATYFQGTTTHSYTRRPLKQPLL 63
Query: 885 DNLTNLSTEEAVQLSKRWLRQMA 907
+ A+ + LR M
Sbjct: 64 YHDDEGDQLAALAVWITILRFMG 86
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 29.8 bits (67), Expect = 3.7
Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 15/104 (14%)
Query: 568 DGVVCFFTSYLYLESVFETRDDISVIRNY-------GQLLVDIACVVPDGVVCFFTSYLY 620
D V FF++ +Y F+ D + G + D C G
Sbjct: 107 DAVTMFFSTIMY----FDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQ 162
Query: 621 LESVVASWYDQGIIDNLQKR----KLLFIETQDALDSRSVSKER 660
D ++ ++ +L+ I + + +
Sbjct: 163 KGEEKLVIMDWREVEPAVQKLRFKRLVQILRPNGEVKAFLVDDE 206
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Length = 1180
Score = 30.3 bits (68), Expect = 4.3
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 13/60 (21%)
Query: 448 MVELKKALDA-----KGHCLLEMPSGTGKTTSLLSLIVAYM--------NAHPLDVTKLL 494
M ++ + LD +G L+E +GTGKT ++ +L + + PL V +LL
Sbjct: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL 60
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 28.2 bits (63), Expect = 4.4
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 8/70 (11%)
Query: 215 RFIEYLKTRLRVQQVVQESPATFLKDISSKPAPSM--------ISEAYRYIFSTEEHLKT 266
+ K R+ V + F P P+M + +R +
Sbjct: 6 YWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHW 65
Query: 267 RLRVQQVVQE 276
L ++ VV
Sbjct: 66 SLIMESVVPS 75
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 29.5 bits (67), Expect = 4.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 460 HCLLEMPSGTGKTTSLLSLI 479
H L P GTGKT + ++L
Sbjct: 40 HLLFSGPPGTGKTATAIALA 59
>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold
pseudosymmetric structure, agmatine degradation pathway,
covalent amidino adduct; HET: AGT; 1.65A {Enterococcus
faecalis} SCOP: d.126.1.6
Length = 389
Score = 29.6 bits (66), Expect = 4.8
Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 3/114 (2%)
Query: 583 VFETRDDISVIRNYGQLLVDIACVVPDGVVCFFTSYLYLESVVASWYDQGIIDNLQKRKL 642
V+E ++ + +R+ G V GV F ++ L + +DQ D+L +K+
Sbjct: 84 VYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQ---DDLVAQKI 140
Query: 643 LFIETQDALDSRSVSKERDGKIVDGRCHSLTSSSVRDRHKAGENIPVCDFYEKF 696
IE D+ + E VDG+ LT+ + +K
Sbjct: 141 CEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKL 194
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 29.4 bits (67), Expect = 5.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 454 ALDAKGHCLLEMPSGTGKTTSLLSL 478
+ GH LLE G KT S+ +L
Sbjct: 42 GICTGGHILLEGVPGLAKTLSVNTL 66
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 29.5 bits (67), Expect = 5.4
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Query: 454 ALDAKGHCLLEMPSGTGKTTSLLSLIVA 481
L+ H LL P G GKTT L+ ++A
Sbjct: 37 PLE---HLLLFGPPGLGKTT--LAHVIA 59
>3l09_A Putative transcriptional regulator; structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
transcription regulator; 2.81A {Jannaschia SP}
Length = 266
Score = 29.2 bits (65), Expect = 5.4
Identities = 7/63 (11%), Positives = 13/63 (20%), Gaps = 16/63 (25%)
Query: 155 EADSAKLREEYARLVEGLRDAQSARETD----------------VVLANPVLPDEILQEV 198
A E+ L L +T ++L + + L
Sbjct: 173 VVVEAGCEAEFKALERTLAQIDKVPDTRLERFTLRVLVLHAWRRLILRSSPAAEAALGGA 232
Query: 199 VPG 201
Sbjct: 233 RAE 235
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 29.6 bits (66), Expect = 5.6
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 9/63 (14%)
Query: 61 KEMGRELGLCP--YFLARQAIIHAKIVVYSY-HYLLDPKIANVVSKELARSSVVVFDEAH 117
M + G+ P R A + +Y +L D +++ DE H
Sbjct: 275 AYMSKAHGIDPNIRTGVRTITTGAPVTYSTYGKFLADGGC------SGGAYDIIICDECH 328
Query: 118 NID 120
+ D
Sbjct: 329 STD 331
Score = 29.6 bits (66), Expect = 5.6
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 9/63 (14%)
Query: 716 KEMGRELGLCP--YFLARQAIIHAKIVVYSY-HYLLDPKIANVVSKELARSSVVVFDEAH 772
M + G+ P R A + +Y +L D +++ DE H
Sbjct: 275 AYMSKAHGIDPNIRTGVRTITTGAPVTYSTYGKFLADGGC------SGGAYDIIICDECH 328
Query: 773 NID 775
+ D
Sbjct: 329 STD 331
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 29.1 bits (65), Expect = 5.7
Identities = 14/100 (14%), Positives = 27/100 (27%), Gaps = 7/100 (7%)
Query: 568 DGVVCFFTSYLYLESVFETRDDISVIRNY----GQLLVDIAC---VVPDGVVCFFTSYLY 620
V C F+S +L E + + G ++V+ G V T
Sbjct: 112 SAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAG 171
Query: 621 LESVVASWYDQGIIDNLQKRKLLFIETQDALDSRSVSKER 660
+V + + + + D + R
Sbjct: 172 GTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHR 211
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 29.5 bits (67), Expect = 5.8
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Query: 454 ALDAKGHCLLEMPSGTGKTTSLLSLIVA 481
LD H L P+G GKTT L+ I++
Sbjct: 54 CLD---HILFSGPAGLGKTT--LANIIS 76
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker B,
sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 29.5 bits (67), Expect = 5.9
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Query: 454 ALDAKGHCLLEMPSGTGKTTSLLSLIVA 481
LD H LL P G GKTT L+ I+A
Sbjct: 50 VLD---HVLLAGPPGLGKTT--LAHIIA 72
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 29.3 bits (66), Expect = 6.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 460 HCLLEMPSGTGKTTSLLSLI 479
H L P G GKTT+ L+L
Sbjct: 48 HLLFAGPPGVGKTTAALALA 67
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo
sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A*
2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A*
3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A*
3kqm_A* 3kqo_A* 3kqp_A* ...
Length = 289
Score = 29.0 bits (64), Expect = 6.4
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 12/83 (14%)
Query: 792 EKAVGNIQTLEGTLKEMKEADSAKLREEYARLVEGLRDAQSARE------------TDVV 839
+ N Q L L+E A + + ++A L+EG + +E DV
Sbjct: 101 DFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVH 160
Query: 840 LANPVLPDEILQGKTDYGIMIFA 862
P+ D + F
Sbjct: 161 QPQPLGAGSPAPLPADALVSAFC 183
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase,
ATP-binding, reticulum, nucleotidyltransferase,
multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4}
PDB: 2vbc_A 2wzq_A
Length = 618
Score = 29.5 bits (66), Expect = 6.5
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 8/35 (22%)
Query: 86 VYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
++ L ++ N +++V DEAH D
Sbjct: 264 TFTTRLLSSTRVPNY--------NLIVMDEAHFTD 290
Score = 29.5 bits (66), Expect = 6.5
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 8/35 (22%)
Query: 741 VYSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
++ L ++ N +++V DEAH D
Sbjct: 264 TFTTRLLSSTRVPNY--------NLIVMDEAHFTD 290
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 29.4 bits (66), Expect = 6.8
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 450 ELKKALDAKGHC--LLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVV 507
L KA+ K LL P GTGKT + + A + S+ E E +
Sbjct: 228 ALFKAIGVKPPRGILLYGPPGTGKTL-IARAVANETGAFFFLINGPEIMSKLAGESESNL 286
Query: 508 EEL 510
+
Sbjct: 287 RKA 289
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate
reduction, oxidored sulfite reduction; HET: SRM; 1.76A
{Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Length = 437
Score = 29.0 bits (65), Expect = 7.5
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 216 FIEYLKTRLRVQQVVQ-ESPATFLKDISSKPAPSMISEAYR---YIFSTEE 262
++E K R R+ + ++ L+ +K P +SE R YIF EE
Sbjct: 369 WMEEGKNRERLGETMKRVGFQKLLEVTGTKAVPQHVSEP-RHNPYIFFKEE 418
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 28.8 bits (65), Expect = 7.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 460 HCLLEMPSGTGKTTSLLSLI 479
H L P GTGKT + ++L
Sbjct: 40 HLLFSGPPGTGKTATAIALA 59
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 29.3 bits (65), Expect = 8.5
Identities = 22/175 (12%), Positives = 59/175 (33%), Gaps = 24/175 (13%)
Query: 81 HAKIVVYSYHYLL-DPKIANVVSKELARSSVVVFDEAHNIDNV---------CVDSLSVR 130
++V+ S + + + + A ++V DEAH++ ++ L+
Sbjct: 248 TEQLVICSLDFARRSKQRLEHLCE--AEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEH 305
Query: 131 INRR-----T-IEKAVGNIQTLEGTLKEMKEADSAKLREEY------ARLVEGLRDAQSA 178
+ T + + + L + D A+ EE A V L
Sbjct: 306 VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKL 365
Query: 179 RETDVVLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQES 233
++ + ++ ++ ++ ++ +E + + L R +V+ +
Sbjct: 366 SNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRN 420
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 28.8 bits (64), Expect = 8.6
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 8/44 (18%)
Query: 568 DGVVCFFTSYLYLESVFETRDDI--------SVIRNYGQLLVDI 603
D V+C S+ +L + + S++R G L++D
Sbjct: 132 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 29.1 bits (65), Expect = 8.8
Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 14/114 (12%)
Query: 452 KKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELA 511
L + L++ P GTGKT + +++ H ++L C+ P V A
Sbjct: 370 SHVLQ-RPLSLIQGPPGTGKTVTSATIVYHLSKIHK---DRILVCA---PSNVAVDHLAA 422
Query: 512 RLFDYYIK-------HNEEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQL 558
+L D +K E++ + L+ + ++ E ++ + + G+L
Sbjct: 423 KLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGEL 476
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP;
alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A
{Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A*
3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Length = 418
Score = 28.7 bits (64), Expect = 9.8
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 216 FIEYLKTRLRVQQVVQ-ESPATFLKDISSKPAPSMISEAYR---YIFSTEE 262
+ E K R R+ +++ + FLK I + M+ R ++F ++
Sbjct: 352 WDEEGKFRERIGELIWRKGMREFLKVIGREADVRMVKAP-RNNPFMFFEKD 401
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.391
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,602,906
Number of extensions: 932936
Number of successful extensions: 2557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2524
Number of HSP's successfully gapped: 91
Length of query: 941
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 838
Effective length of database: 3,825,930
Effective search space: 3206129340
Effective search space used: 3206129340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.7 bits)