RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11433
(941 letters)
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 33.5 bits (75), Expect = 0.095
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 442 PEQYAYMVELKKALDAK-GHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRT 499
P Q ++A++ G CL+ +G+GKT + + I + + + T
Sbjct: 4 PGQ-------QQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFT 55
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 31.9 bits (71), Expect = 0.37
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 8/59 (13%)
Query: 442 PEQYAYMVELKKALDAK-GHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRT 499
EQ ++A+ G L+ +G+GKT L I M + +L + T
Sbjct: 14 KEQ-------QEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFT 65
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 31.2 bits (69), Expect = 0.40
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 441 YPEQYAYMVELKKALDAK--GHC-LLEMPSGTGKTTSLLSLIVAYMNAHP 487
YP +L + A H L++ G G + +L + P
Sbjct: 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQP 53
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain
(RecB), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 485
Score = 31.2 bits (69), Expect = 0.60
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 448 MVELKKALDA-----KGHCLLEMPSGTGKTTSLLSLIVAYMNAH 486
M ++ + LD +G L+E +GTGKT ++ +L + +
Sbjct: 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGL 44
>d1lp3a_ b.121.5.2 (A:) Dependovirus capsid protein
{Adeno-associated virus, aav-2 [TaxId: 272636]}
Length = 519
Score = 31.0 bits (70), Expect = 0.80
Identities = 22/97 (22%), Positives = 30/97 (30%), Gaps = 19/97 (19%)
Query: 422 YAMGLMIDDLPVFFPYEYIYPEQYAYMV---ELKKALDAKGHCLLEMPS---GTGKTTSL 475
Y +G FP + QY Y+ + + +CL PS TG +
Sbjct: 136 YVLGSAHQGCLPPFPADVFMVPQYGYLTLNNGSQAVGRSSFYCLEYFPSQMLRTGNNFTF 195
Query: 476 L----SLIVAYMNAH---------PLDVTKLLYCSRT 499
+ AH PL L Y SRT
Sbjct: 196 SYTFEDVPFHSSYAHSQSLDRLMNPLIDQYLYYLSRT 232
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 29.5 bits (65), Expect = 1.8
Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 3/75 (4%)
Query: 454 ALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARL 513
K ++++ G GKT L IV L L + T ++ E L L
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRT---LILAPTRVVAAEMEEALRGL 61
Query: 514 FDYYIKHNEEINMTG 528
Y TG
Sbjct: 62 PIRYQTPAIRAEHTG 76
>d2v4ja3 d.134.1.1 (A:168-241,A:323-437) Dissimilatory sulfite
reductase subunit alpha, DsrA {Desulfovibrio vulgaris
[TaxId: 881]}
Length = 189
Score = 29.2 bits (65), Expect = 1.8
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
Query: 184 VLANPVLPDEILQEVVPGNIRTAEHFVGFLKRFIEYLKTRLRVQQVVQE-SPATFLKDIS 242
+L V +E E+ E ++E K R R+ + ++ S L+
Sbjct: 96 LLVPFVAAEEPFDEIK-------EVVEKIWDWWMEEGKNRERLGETMKRLSFQKLLEVTE 148
Query: 243 SKPAPSMISE--AYRYIFSTEE 262
P P + E YIF EE
Sbjct: 149 IAPVPQHVKEPRTNPYIFFKEE 170
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 28.5 bits (62), Expect = 1.9
Identities = 18/99 (18%), Positives = 27/99 (27%), Gaps = 1/99 (1%)
Query: 455 LDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLF 514
L +L+ G GKT L I+A L L + E+++ L F
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKF 63
Query: 515 DYYIKHNEEINMTGLVLSSRKNLC-IHSEFETRDDISVI 552
+ L E + VI
Sbjct: 64 HTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVI 102
>d1s58a_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
protein {Human parvovirus B19 [TaxId: 10798]}
Length = 536
Score = 29.9 bits (67), Expect = 1.9
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 422 YAMGLMIDDLPVFFPYEYIYPEQYAY 447
Y +G D L P +P QYAY
Sbjct: 143 YVLGQGQDTLAPELPIWVYFPPQYAY 168
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 28.3 bits (62), Expect = 2.4
Identities = 12/100 (12%), Positives = 25/100 (25%), Gaps = 10/100 (10%)
Query: 462 LLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVPEIEKVVEELARLFDYYIKHN 521
L P+G+GK+T + + A P + + A + +
Sbjct: 12 HLHAPTGSGKSTKVPAAYAAQGY----------KVLVLNPSVAATLGFGAYMSKAHGVDP 61
Query: 522 EEINMTGLVLSSRKNLCIHSEFETRDDISVIRNYGQLLVD 561
+ + D Y ++ D
Sbjct: 62 NIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICD 101
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 623
Score = 29.1 bits (64), Expect = 3.2
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 459 GHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRT 499
G L+ +G+GKT L I M + +L + T
Sbjct: 25 GPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFT 65
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 28.7 bits (63), Expect = 3.5
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 449 VELKKALDAKGHCLLEMPSGTGKTT 473
+ L G L+ GTGK+T
Sbjct: 19 LLLTAVDPGIGGVLVFGDRGTGKST 43
>d1mvma_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
protein {Murine minute virus, strain i [TaxId: 10794]}
Length = 549
Score = 28.7 bits (64), Expect = 3.7
Identities = 6/40 (15%), Positives = 12/40 (30%)
Query: 422 YAMGLMIDDLPVFFPYEYIYPEQYAYMVELKKALDAKGHC 461
Y + F+P++ Y Y + + L
Sbjct: 150 YTPAANSMETLGFYPWKPTIASPYRYYFCVDRDLSVTYEN 189
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 142
Score = 27.8 bits (62), Expect = 3.7
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 600 LVDIACVVPDGVV---CFFTSYLYLESVVASWYDQGIIDN 636
L+D V P+ ++ FF +Y +A W G D+
Sbjct: 16 LLDSISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDD 55
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 298
Score = 28.1 bits (61), Expect = 4.5
Identities = 9/58 (15%), Positives = 22/58 (37%)
Query: 444 QYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVP 501
++ + + ++ C++ G GKT ++LI + P ++ P
Sbjct: 65 KFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSP 122
>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 224
Score = 27.9 bits (61), Expect = 4.5
Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 11/109 (10%)
Query: 429 DDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPL 488
+ F P +AY +EL +G L++ SG+G T+ + +V
Sbjct: 47 SPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCT----- 101
Query: 489 DVTKLLYCSRTVPEIEKVVEELARLFDYYIKHNEEINMTGLVLSSRKNL 537
+ I+++V++ LV+ +
Sbjct: 102 ------GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 144
>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 223
Score = 27.5 bits (60), Expect = 6.2
Identities = 10/53 (18%), Positives = 21/53 (39%)
Query: 429 DDLPVFFPYEYIYPEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVA 481
P+ P +A+ +E + G +L++ SG+G T+ +
Sbjct: 51 APQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIK 103
>d1yq2a1 b.1.4.1 (A:610-721) beta-Galactosidase, domains 2 and 4
{Arthrobacter sp. c2-2 [TaxId: 192168]}
Length = 112
Score = 26.5 bits (58), Expect = 6.3
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 295 PLRFCAERLASLLRTLEITNLTDFSSL 321
P+R A TL + NL +
Sbjct: 1 PIRLGLSLPAGGKPTLAVANLRHTADA 27
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 27.8 bits (61), Expect = 6.9
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 440 IYPEQYAYMVELKKALDAK-GHCLLEMPSGTGKTTSLLSLIVA 481
+P+ ++ + +D G +LE SG+G + LS V
Sbjct: 82 TFPKDINMILSM---MDINPGDTVLEAGSGSGGMSLFLSKAVG 121
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 27.3 bits (60), Expect = 7.9
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 8/90 (8%)
Query: 429 DDLPVFFPYEYIYPEQYAYMVELK--KALD-----AKGHCLLEM-PSGTGKTTSLLSLIV 480
++L + E+ E + LD +G L + P GKT L ++
Sbjct: 6 ENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65
Query: 481 AYMNAHPLDVTKLLYCSRTVPEIEKVVEEL 510
+ HP V +L E+ ++ +
Sbjct: 66 SIAYNHPDCVLMVLLIDERPEEVTEMQRLV 95
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 27.0 bits (58), Expect = 9.0
Identities = 13/87 (14%), Positives = 27/87 (31%)
Query: 442 PEQYAYMVELKKALDAKGHCLLEMPSGTGKTTSLLSLIVAYMNAHPLDVTKLLYCSRTVP 501
++ ++ K +L P G GKTT+ + + +
Sbjct: 36 SKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLN 95
Query: 502 EIEKVVEELARLFDYYIKHNEEINMTG 528
K + + Y+ + E N+ G
Sbjct: 96 AGVKNALDNMSVVGYFKHNEEAQNLNG 122
>d1q92a_ c.108.1.8 (A:) 5'(3')-deoxyribonucleotidase (dNT-2) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 26.7 bits (58), Expect = 9.9
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 87 YSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 120
S L+D + ++ V+F HN
Sbjct: 136 VSADLLIDDRPDITGAEPTPSWEHVLFTACHNQH 169
Score = 26.7 bits (58), Expect = 9.9
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 742 YSYHYLLDPKIANVVSKELARSSVVVFDEAHNID 775
S L+D + ++ V+F HN
Sbjct: 136 VSADLLIDDRPDITGAEPTPSWEHVLFTACHNQH 169
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.391
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,494,384
Number of extensions: 171041
Number of successful extensions: 578
Number of sequences better than 10.0: 1
Number of HSP's gapped: 578
Number of HSP's successfully gapped: 34
Length of query: 941
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 847
Effective length of database: 1,116,976
Effective search space: 946078672
Effective search space used: 946078672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.5 bits)