BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11434
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 13/137 (9%)
Query: 13 FQDICVSAIKEKDIEAKLNQLISDWSQVNLTFAPFKE-----RG--DLFLKPAETTEIIA 65
++++ +A E +E L + W+ + L ++ RG DLF K AE I+
Sbjct: 151 YREVITAAQGEIALEEFLKGVREFWTTLELDLVNYQRKCKLVRGWDDLFNKLAEHLNSIS 210
Query: 66 LIEDSIMATIME-----WLKNLSNSLEILESWMMIQNIWGYLEAVFSG-GEISRQLPAEA 119
++ S + E W L+ +L+ W+ +Q W YLE +FSG G+I++ LPAE+
Sbjct: 211 AMKMSPYYKVFEEEANHWDDRLNKVRSLLDVWIDVQRRWVYLEGIFSGSGDINQLLPAES 270
Query: 120 KKFLEILFNTISVFNNV 136
+F I I++ V
Sbjct: 271 TRFKSINSEFIAILKKV 287
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 13/137 (9%)
Query: 13 FQDICVSAIKEKDIEAKLNQLISDWSQVNLTFAPFKE-----RG--DLFLKPAETTEIIA 65
++++ +A E +E L + W+ + L ++ RG DLF K AE I+
Sbjct: 151 YREVITAAQGEIALEEFLKGVREFWTTLELDLVNYQRKCKLVRGWDDLFNKLAEHLNSIS 210
Query: 66 LIEDSIMATIME-----WLKNLSNSLEILESWMMIQNIWGYLEAVFSG-GEISRQLPAEA 119
++ S + E W L+ +L+ W+ +Q W YLE +FSG G+I++ LPAE+
Sbjct: 211 AMKMSPYYKVFEEEANHWDDRLNKVRSLLDVWIDVQRRWVYLEGIFSGSGDINQLLPAES 270
Query: 120 KKFLEILFNTISVFNNV 136
+F I I++ V
Sbjct: 271 TRFKSINSEFIAILKKV 287
>pdb|2DGA|A Chain A, Crystal Structure Of Hexameric Beta-Glucosidase In Wheat
pdb|3AIQ|A Chain A, Crystal Structure Of Beta-Glucosidase In Wheat Complexed
With An Aglycone Dimboa
pdb|3AIR|A Chain A, Crystal Structure Of Beta-Glucosidase In Wheat Complexed
With 2-Deoxy- 2-Fluoroglucoside And Dinitrophenol
Length = 565
Score = 28.5 bits (62), Expect = 1.4, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 108 GGEISRQLPAEAKKFLEILFNTISVFNNVKTWTEYDQP 145
GG ++RQ+ + K+F E+ F + VK W +++P
Sbjct: 202 GGFLNRQIVDDYKQFAEVCFKNFG--DRVKNWFTFNEP 237
>pdb|3AIS|A Chain A, Crystal Structure Of A Mutant Beta-Glucosidase In Wheat
Complexed With Dimboa-Glc
Length = 565
Score = 27.3 bits (59), Expect = 3.1, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 108 GGEISRQLPAEAKKFLEILFNTISVFNNVKTWTEYDQP 145
GG ++RQ+ + K+F E+ F + VK W ++ P
Sbjct: 202 GGFLNRQIVDDYKQFAEVCFKNFG--DRVKNWFTFNAP 237
>pdb|3V08|A Chain A, Crystal Structure Of Equine Serum Albumin
pdb|4F5T|A Chain A, Crystal Structure Of Equine Serum Albumin
pdb|4F5U|A Chain A, Crystal Structure Of Equine Serum Albumin At 2.04
Resolution
Length = 583
Score = 27.3 bits (59), Expect = 3.5, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 17 CVSAIKEKDIEAKLNQLISDWSQVNLTFAPFKERGDLFL 55
C++ +KE D+ + L L +D+++ +K+ D+FL
Sbjct: 288 CIAEVKEDDLPSDLPALAADFAEDKEICKHYKDAKDVFL 326
>pdb|2EJA|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Aquifex Aeolicus
pdb|2EJA|B Chain B, Crystal Structure Of Uroporphyrinogen Decarboxylase From
Aquifex Aeolicus
Length = 338
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/50 (22%), Positives = 30/50 (60%)
Query: 57 PAETTEIIALIEDSIMATIMEWLKNLSNSLEILESWMMIQNIWGYLEAVF 106
P E ++ ++ ++++A + E +K ++ ++I +SW+ ++ Y E V+
Sbjct: 167 PKEYKRLMDILTETVLAYLKEQIKAGADVVQIFDSWVNNLSLEDYGEYVY 216
>pdb|1T6D|A Chain A, Miras Phasing Of The Aquifex Aeolicus PpxGPPA PHOSPHATASE:
CRYSTAL Structure Of The Type Ii Variant
pdb|1T6D|B Chain B, Miras Phasing Of The Aquifex Aeolicus PpxGPPA PHOSPHATASE:
CRYSTAL Structure Of The Type Ii Variant
Length = 315
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 29 KLNQLISDWSQVNLTFAPFKERGDLFLKPAETTEIIALIEDSIMATIMEWLKNLSNSLEI 88
K++ + + Q+ F FKE + E ++ +ED I+ + +LEI
Sbjct: 233 KVHGKVLTYGQIKKWFDTFKE-----IPSEERSKRFRQVEDRRAKVILAGIGIFLKTLEI 287
Query: 89 LESWMMIQNIWGYLEAVF 106
E +I + WG E V
Sbjct: 288 FEKDXLIVSDWGLREGVL 305
>pdb|1T6C|A Chain A, Structural Characterization Of The PpxGPPA PROTEIN FAMILY:
CRYSTAL Structure Of The Aquifex Aeolicus Family Member
Length = 315
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 29 KLNQLISDWSQVNLTFAPFKERGDLFLKPAETTEIIALIEDSIMATIMEWLKNLSNSLEI 88
K++ + + Q+ F FKE + E ++ +ED I+ + +LEI
Sbjct: 233 KVHGKVLTYGQIKKWFDTFKE-----IPSEERSKRFRQVEDRRAKVILAGIGIFLKTLEI 287
Query: 89 LESWMMIQNIWGYLEAVF 106
E +I + WG E V
Sbjct: 288 FEKDCLIVSDWGLREGVL 305
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,456,863
Number of Sequences: 62578
Number of extensions: 155563
Number of successful extensions: 341
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 12
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)