Query psy11434
Match_columns 151
No_of_seqs 155 out of 922
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 18:21:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08393 DHC_N2: Dynein heavy 100.0 2E-33 4.3E-38 237.2 15.4 137 3-141 121-272 (408)
2 COG5245 DYN1 Dynein, heavy cha 75.7 6.5 0.00014 40.2 5.7 96 25-139 565-668 (3164)
3 PF08333 DUF1725: Protein of u 55.2 7.2 0.00016 19.4 0.9 15 95-109 3-17 (20)
4 PF15110 TMEM141: TMEM141 prot 51.8 10 0.00022 26.3 1.6 12 93-104 81-92 (94)
5 PF12095 DUF3571: Protein of u 43.1 34 0.00075 23.1 3.1 30 112-141 40-69 (83)
6 PF15225 IL32: Interleukin 32 42.9 79 0.0017 21.8 4.8 37 73-109 59-101 (104)
7 KOG0429|consensus 37.1 68 0.0015 25.8 4.3 65 73-147 108-178 (258)
8 PF08812 YtxC: YtxC-like famil 31.7 75 0.0016 25.1 3.9 37 2-38 90-126 (221)
9 KOG0568|consensus 28.8 59 0.0013 26.5 2.8 30 117-146 84-113 (342)
10 TIGR02834 spo_ytxC putative sp 28.4 97 0.0021 25.5 4.1 38 1-38 146-183 (276)
11 PF04644 Motilin_ghrelin: Moti 27.5 40 0.00086 18.1 1.1 17 104-120 2-18 (28)
12 KOG1664|consensus 27.3 54 0.0012 26.0 2.3 21 9-29 21-41 (220)
13 PF14131 DUF4298: Domain of un 26.3 2.1E+02 0.0045 19.2 5.3 36 74-109 8-43 (90)
14 PF08671 SinI: Anti-repressor 26.3 53 0.0012 17.9 1.5 15 125-139 1-15 (30)
15 PF05871 ESCRT-II: ESCRT-II co 23.3 76 0.0016 23.4 2.4 46 76-121 16-67 (139)
16 PF10820 DUF2543: Protein of u 21.4 48 0.001 21.9 0.8 19 14-32 47-65 (81)
17 KOG1142|consensus 21.1 48 0.001 27.1 1.0 66 54-120 172-245 (258)
No 1
>PF08393 DHC_N2: Dynein heavy chain, N-terminal region 2; InterPro: IPR013602 Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. Dyneins generally contain one to three heavy chains, where each heavy chain consists of a C-terminal globular head, a flexible microtubule-binding stalk, and a flexible N-terminal tail known as the cargo-binding domain []. The two categories of dyneins are the axonemal dyneins, which produce the bending motions that propagate along cilia and flagella, and the cytosolic dyneins, which drive a variety of fundamental cellular processes including nuclear migration, organisation of the mitotic spindle, chromosome separation during mitosis, and the positioning and function of many intracellular organelles. Cytoplasmic dyneins contain several accessory subunits ranging from light to intermediate chains. This entry represents a region found C-terminal to the dynein heavy chain N-terminal region 1 (IPR013594 from INTERPRO) in many members of this family. No functions seem to have been attributed specifically to this region. ; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=100.00 E-value=2e-33 Score=237.20 Aligned_cols=137 Identities=34% Similarity=0.581 Sum_probs=126.6
Q ss_pred ccchhhhHhHHHHHHHHHhhHHHHHHHHHHHHHhcccceeeeeecccCCceeecCCChHHHHHHhhhhHH----------
Q psy11434 3 RCIINEGNFNFQDICVSAIKEKDIEAKLNQLISDWSQVNLTFAPFKERGDLFLKPAETTEIIALIEDSIM---------- 72 (151)
Q Consensus 3 ~~~l~~~~~~I~eI~~~A~~E~~iE~~L~~i~~~W~~~~f~~~~~k~~~~~iL~~~~~del~~~led~~~---------- 72 (151)
.+|+.+|.+.|.+|+..|++|..||++|++|...|+++.|++.+|+++|+++|+++ |+|++.|+||++
T Consensus 121 ~~~l~~~~~~I~~I~~~A~~E~~ie~~L~~i~~~W~~~~f~~~~~~~~~~~il~~~--~~i~~~led~~~~L~~m~~S~~ 198 (408)
T PF08393_consen 121 DLGLLDHEDKIEEISEQAQKEYKIEQSLEKIKEEWKNMEFEFVPYKDKDVFILKNW--DEIIQQLEDHLLTLQSMKSSPF 198 (408)
T ss_dssp HS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-B-EEEEETTT-CEEEE-C--HHHHHHHHHHHHHHHHTCSSTT
T ss_pred HhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhceeeeeccccchhheecch--HHHHHHHHHHHHHHhcccccch
Confidence 47899999999999999999999999999999999999999999999889999875 899999999997
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcchhhhhhCHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy11434 73 -----ATIMEWLKNLSNSLEILESWMMIQNIWGYLEAVFSGGEISRQLPAEAKKFLEILFNTISVFNNVKTWTE 141 (151)
Q Consensus 73 -----~~v~~We~~L~~i~~il~~W~~vQr~W~yLe~IF~~~DI~~qLP~Es~~F~~vd~~~~~im~~~~~~~~ 141 (151)
++|..|+++|+.++++|+.|+.||++|+||+|||+++||+++||.|+++|..|++.|+.+|+++.+.++
T Consensus 199 ~~~~~~~v~~w~~~L~~~~~il~~w~~~Q~~W~yL~~if~~~di~~~lp~e~~~F~~i~~~~~~i~~~~~~~~~ 272 (408)
T PF08393_consen 199 VKPFRDEVEEWEKKLNNIQEILEEWMEVQRKWMYLEPIFSSSDIKKQLPKEAKKFSSIDKEWRSIMKRAQKDPN 272 (408)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHCCCTHHHHHHHHHHHHHHHHHHHHHHCT-C
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcChHHHHHHHHHHhCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999976643
No 2
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=75.66 E-value=6.5 Score=40.16 Aligned_cols=96 Identities=5% Similarity=-0.028 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhcccceeeeeecccCCceeecCCChHHHHHHhhhhHH-HHH------HHHHHHHHHHHHHHHHHHHHHH
Q psy11434 25 DIEAKLNQLISDWSQVNLTFAPFKERGDLFLKPAETTEIIALIEDSIM-ATI------MEWLKNLSNSLEILESWMMIQN 97 (151)
Q Consensus 25 ~iE~~L~~i~~~W~~~~f~~~~~k~~~~~iL~~~~~del~~~led~~~-~~v------~~We~~L~~i~~il~~W~~vQr 97 (151)
.++.++..+...|...+.+ ..+..|+ -+.|+|... .+. .+-+.+|...+.+-- -
T Consensus 565 iv~~s~~r~~k~~~e~q~~---------~~irewc----~~~l~~~~~~~~a~~~e~~~d~~~~l~~~s~~~v------~ 625 (3164)
T COG5245 565 IVQLSGIRRAKRCVERQID---------DEIREWC----SSVLSDDFLEERAVRVERGADGARRLRASSGSPV------L 625 (3164)
T ss_pred HHHHhhhHHHHHHHHHHHH---------HHHHHHH----HHHHHHHHHHHHHHHHHcCccHHHHHHhccCCcH------H
Confidence 6778888888888766544 1223331 122333333 222 233444444433211 5
Q ss_pred hHHHhhhhhcch-hhhhhCHHHHHHHHHHHHHHHHHHHHhhcc
Q psy11434 98 IWGYLEAVFSGG-EISRQLPAEAKKFLEILFNTISVFNNVKTW 139 (151)
Q Consensus 98 ~W~yLe~IF~~~-DI~~qLP~Es~~F~~vd~~~~~im~~~~~~ 139 (151)
.|+.+..|.++. ||..-+|.+..+|.++...++.|.+++.+.
T Consensus 626 ~~ld~y~~~~~~~dl~~~ip~~~~~~~sl~s~~~~i~~r~~~~ 668 (3164)
T COG5245 626 RRLDEYLMMMSLEDLMPLIPHAVHRKMSLVSGVRGIYKRVVSG 668 (3164)
T ss_pred HHHHHHHHHhhhhhhcccccHHHHHHHHHHhhhhhhhhhhhcc
Confidence 799999999999 999999999999999999999999999876
No 3
>PF08333 DUF1725: Protein of unknown function (DUF1725); InterPro: IPR013544 This domain is found at the C terminus of many eukaryotic and one bacterial sequence. Many of its members are annotated as being putative L1 retrotransposons or LINE-1 reverse transcriptase homologues. The region in question is found repeated in some family members.
Probab=55.19 E-value=7.2 Score=19.38 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=11.1
Q ss_pred HHHhHHHhhhhhcch
Q psy11434 95 IQNIWGYLEAVFSGG 109 (151)
Q Consensus 95 vQr~W~yLe~IF~~~ 109 (151)
+=.+||.||+|--+.
T Consensus 3 F~~kWmeLE~IiLse 17 (20)
T PF08333_consen 3 FAGKWMELENIILSE 17 (20)
T ss_pred hHHHHHHHHHHHHHh
Confidence 346899999996553
No 4
>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A.
Probab=51.78 E-value=10 Score=26.26 Aligned_cols=12 Identities=42% Similarity=0.827 Sum_probs=10.4
Q ss_pred HHHHHhHHHhhh
Q psy11434 93 MMIQNIWGYLEA 104 (151)
Q Consensus 93 ~~vQr~W~yLe~ 104 (151)
..||..||+||.
T Consensus 81 ~~Cq~~W~~lE~ 92 (94)
T PF15110_consen 81 QKCQNLWMFLET 92 (94)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 589999999984
No 5
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=43.11 E-value=34 Score=23.12 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=20.0
Q ss_pred hhhCHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy11434 112 SRQLPAEAKKFLEILFNTISVFNNVKTWTE 141 (151)
Q Consensus 112 ~~qLP~Es~~F~~vd~~~~~im~~~~~~~~ 141 (151)
...||.+-++|..++..-..++..++++..
T Consensus 40 ~~~LP~dL~~~~s~~~qa~~Lldt~CeLei 69 (83)
T PF12095_consen 40 QDDLPPDLAKFSSVEEQAQYLLDTACELEI 69 (83)
T ss_dssp TTTS-HHHHH---HHHHHHHHHHH---EEE
T ss_pred CCCCCHHHHhCCCHHHHHHHHHHhceeeec
Confidence 457899999999999999999999998754
No 6
>PF15225 IL32: Interleukin 32
Probab=42.93 E-value=79 Score=21.79 Aligned_cols=37 Identities=14% Similarity=0.373 Sum_probs=31.0
Q ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHhHHHhhhhhcch
Q psy11434 73 ATIMEWLKNLS------NSLEILESWMMIQNIWGYLEAVFSGG 109 (151)
Q Consensus 73 ~~v~~We~~L~------~i~~il~~W~~vQr~W~yLe~IF~~~ 109 (151)
..|..|.++.- .++.+--.|..+|+-|..|..+|.|+
T Consensus 59 ~~vlAWVkk~va~~~~ALv~av~A~Wk~fq~Fcc~la~l~~S~ 101 (104)
T PF15225_consen 59 QAVLAWVKKMVAAGMQALVSAVQALWKEFQSFCCSLAELLRSS 101 (104)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888887765 47777788999999999999998775
No 7
>KOG0429|consensus
Probab=37.13 E-value=68 Score=25.83 Aligned_cols=65 Identities=20% Similarity=0.272 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcch--hhhhh-CHHHHHHHHHHHHHHHHHHHHhhc---ccccCCCC
Q psy11434 73 ATIMEWLKNLSNSLEILESWMMIQNIWGYLEAVFSGG--EISRQ-LPAEAKKFLEILFNTISVFNNVKT---WTEYDQPK 146 (151)
Q Consensus 73 ~~v~~We~~L~~i~~il~~W~~vQr~W~yLe~IF~~~--DI~~q-LP~Es~~F~~vd~~~~~im~~~~~---~~~~~~~~ 146 (151)
.-..+|.+.=..+-.+| +||..||.+. +|.+- -|+-+..+..=...|++....-.. ..-||+|.
T Consensus 108 raf~eWRk~ehhiwqvL----------~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr~~iyD~pp 177 (258)
T KOG0429|consen 108 RAFPEWRKEEHHIWQVL----------VYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASRSMIYDEPP 177 (258)
T ss_pred hhhhhhhccccHHHHHH----------HHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44556887777766555 8999999998 56644 688888888888899988775444 46799986
Q ss_pred C
Q psy11434 147 K 147 (151)
Q Consensus 147 ~ 147 (151)
-
T Consensus 178 t 178 (258)
T KOG0429|consen 178 T 178 (258)
T ss_pred C
Confidence 4
No 8
>PF08812 YtxC: YtxC-like family; InterPro: IPR014199 This uncharacterised protein is one of a number of proteins conserved in all known endospore-forming Firmicutes (low-GC Gram-positive bacteria), including Carboxydothermus hydrogenoformans, and it is not found in non-endospore forming species. It is uniformly distributed in the mother cell cytoplasm in Bacillus subtilis [].
Probab=31.73 E-value=75 Score=25.07 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=32.4
Q ss_pred cccchhhhHhHHHHHHHHHhhHHHHHHHHHHHHHhcc
Q psy11434 2 TRCIINEGNFNFQDICVSAIKEKDIEAKLNQLISDWS 38 (151)
Q Consensus 2 ~~~~l~~~~~~I~eI~~~A~~E~~iE~~L~~i~~~W~ 38 (151)
.+..|..|.+.+.++++.|..|+.+|+.-++.-..++
T Consensus 90 i~FRLk~y~~~l~~~ve~aVdEy~~EkEY~eFI~lLr 126 (221)
T PF08812_consen 90 ITFRLKDYREELEEIVEKAVDEYLMEKEYQEFIQLLR 126 (221)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999888777666
No 9
>KOG0568|consensus
Probab=28.81 E-value=59 Score=26.53 Aligned_cols=30 Identities=23% Similarity=0.139 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCCCC
Q psy11434 117 AEAKKFLEILFNTISVFNNVKTWTEYDQPK 146 (151)
Q Consensus 117 ~Es~~F~~vd~~~~~im~~~~~~~~~~~~~ 146 (151)
..+.+|..||..||+.+......||..|.+
T Consensus 84 adaa~f~qideafrkvlq~~~~ktn~~qn~ 113 (342)
T KOG0568|consen 84 ADAARFIQIDEAFRKVLQEKFAKTNARQNI 113 (342)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 468899999999999999988888776643
No 10
>TIGR02834 spo_ytxC putative sporulation protein YtxC. This uncharacterized protein is part of a panel of proteins conserved in all known endospore-forming Firmicutes (low-GC Gram-positive bacteria), including Carboxydothermus hydrogenoformans, and nowhere else.
Probab=28.44 E-value=97 Score=25.45 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=31.3
Q ss_pred CcccchhhhHhHHHHHHHHHhhHHHHHHHHHHHHHhcc
Q psy11434 1 MTRCIINEGNFNFQDICVSAIKEKDIEAKLNQLISDWS 38 (151)
Q Consensus 1 ~~~~~l~~~~~~I~eI~~~A~~E~~iE~~L~~i~~~W~ 38 (151)
|.+..|-.|.+.+.++++.|..|+.+|+.-++.-..-+
T Consensus 146 FitFRLk~y~~~L~~~Ve~aidEy~~EkEYqeFI~lLr 183 (276)
T TIGR02834 146 FVTFRLKPYVEELRDIVEKAIDEYLMEKEYQEFIKLLR 183 (276)
T ss_pred ceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999998877655443
No 11
>PF04644 Motilin_ghrelin: Motilin/ghrelin; InterPro: IPR006738 Motilin is a gastrointestinal regulatory polypeptide produced by motilin cells in the duodenal epithelium. It is released into the general circulation at about 100-min intervals during the inter-digestive state and is the most important factor in controlling the inter-digestive migrating contractions. Motilin also stimulates endogenous release of the endocrine pancreas []. This domain is also found in ghrelin, a growth hormone secretagogue synthesised by endocrine cells in the stomach. Ghrelin stimulates growth hormone secretagogue receptors in the pituitary. These receptors are distinct from the growth hormone-releasing hormone receptors, and thus provide a means of controlling pituitary growth hormone release by the gastrointestinal system [].; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LBJ_A.
Probab=27.45 E-value=40 Score=18.12 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=10.4
Q ss_pred hhhcchhhhhhCHHHHH
Q psy11434 104 AVFSGGEISRQLPAEAK 120 (151)
Q Consensus 104 ~IF~~~DI~~qLP~Es~ 120 (151)
|||.++|+++.=-.|++
T Consensus 2 p~F~~~e~qr~QekE~n 18 (28)
T PF04644_consen 2 PIFTSSEHQRMQEKERN 18 (28)
T ss_dssp -TT-HHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHhc
Confidence 78999998876444444
No 12
>KOG1664|consensus
Probab=27.26 E-value=54 Score=26.00 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=18.3
Q ss_pred hHhHHHHHHHHHhhHHHHHHH
Q psy11434 9 GNFNFQDICVSAIKEKDIEAK 29 (151)
Q Consensus 9 ~~~~I~eI~~~A~~E~~iE~~ 29 (151)
-.++..||...|..|+.||+.
T Consensus 21 A~EKA~EI~~kAeeEfnIEK~ 41 (220)
T KOG1664|consen 21 AEEKAKEIDAKAEEEFNIEKG 41 (220)
T ss_pred HHHHHHHhhhhhHHHhhHHHH
Confidence 357899999999999999974
No 13
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=26.31 E-value=2.1e+02 Score=19.23 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcch
Q psy11434 74 TIMEWLKNLSNSLEILESWMMIQNIWGYLEAVFSGG 109 (151)
Q Consensus 74 ~v~~We~~L~~i~~il~~W~~vQr~W~yLe~IF~~~ 109 (151)
....|...|..+.+.++.|...|..-.-|..-.+|+
T Consensus 8 ~y~~~~~~l~~le~~l~~~~~~~~~~~~L~~YY~s~ 43 (90)
T PF14131_consen 8 IYNEWCELLEELEEALEKWQEAQPDYRKLRDYYGSE 43 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 346788888888888888888888888888877555
No 14
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=26.28 E-value=53 Score=17.85 Aligned_cols=15 Identities=7% Similarity=0.003 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhhcc
Q psy11434 125 ILFNTISVFNNVKTW 139 (151)
Q Consensus 125 vd~~~~~im~~~~~~ 139 (151)
+|.+|..+|..+.+.
T Consensus 1 LD~EW~~Li~eA~~~ 15 (30)
T PF08671_consen 1 LDEEWVELIKEAKES 15 (30)
T ss_dssp --HHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHc
Confidence 478999999887654
No 15
>PF05871 ESCRT-II: ESCRT-II complex subunit; InterPro: IPR008570 This entry represents the vps25 subunit (vacuolar protein sorting-associated protein 25) of the endosome-associated complex ESCRT-II (Endosomal Sorting Complexes Required for Transport protein II). ESCRT (ESCRT-I, -II, -III) complexes orchestrate efficient sorting of ubiquitinated transmembrane receptors to lysosomes via multivesicular bodies (MVBs) []. ESCRT-II recruits the transport machinery for protein sorting at MVB []. In addition, the human ESCRT-II has been shown to form a complex with RNA polymerase II elongation factor ELL in order to exert transcriptional control activity. ESCRT-II transiently associates with the endosomal membrane and thereby initiates the formation of ESCRT-III, a membrane-associated protein complex that functions immediately downstream of ESCRT-II during sorting of MVB cargo. ESCRT-II in turn functions downstream of ESCRT-I, a protein complex that binds to ubiquitinated endosomal cargo []. ESCRT-II is a trilobal complex composed of two copies of vps25, one copy of vps22 and the C-terminal region of vps36. The crystal structure of vps25 revealed two winged-helix domains, the N-terminal domain of vps25 interacting with vps22 and vps35 [].; PDB: 1W7P_B 1U5T_D 1XB4_D 3HTU_E 3CUQ_C 2ZME_D.
Probab=23.26 E-value=76 Score=23.37 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH-h-----hhhhcchhhhhhCHHHHHH
Q psy11434 76 MEWLKNLSNSLEILESWMMIQNIWGY-L-----EAVFSGGEISRQLPAEAKK 121 (151)
Q Consensus 76 ~~We~~L~~i~~il~~W~~vQr~W~y-L-----e~IF~~~DI~~qLP~Es~~ 121 (151)
..+.+.|..=.+++-.|....|.|.- + .|+|.+..|.|.||.|..+
T Consensus 16 ~Tr~~Ql~~W~~lIl~y~~~~k~~~l~~~e~~~~~lF~N~~I~R~L~~e~~~ 67 (139)
T PF05871_consen 16 ETREKQLELWSDLILDYCRHHKIFRLSLSEALESPLFNNESINRRLSPEFIR 67 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-SEEECHHHHCCCTTEETTTTEE--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhceeeeecccccCCCCccCccccCCCCHHHHH
Confidence 34566666667777888888777742 1 4899999999999988653
No 16
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=21.36 E-value=48 Score=21.89 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=15.1
Q ss_pred HHHHHHHhhHHHHHHHHHH
Q psy11434 14 QDICVSAIKEKDIEAKLNQ 32 (151)
Q Consensus 14 ~eI~~~A~~E~~iE~~L~~ 32 (151)
.+|++.|++|.+-|..++.
T Consensus 47 eeIsEeaQ~EMA~eAgi~~ 65 (81)
T PF10820_consen 47 EEISEEAQQEMASEAGIDE 65 (81)
T ss_pred HhhhHHHHHHHHHHcCCcH
Confidence 5799999999998875543
No 17
>KOG1142|consensus
Probab=21.15 E-value=48 Score=27.09 Aligned_cols=66 Identities=18% Similarity=0.330 Sum_probs=50.9
Q ss_pred eecCCChHHHHHHhhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHhhhhhcchhhh---hhCHHHHH
Q psy11434 54 FLKPAETTEIIALIEDSIMATIMEWLKNLS-----NSLEILESWMMIQNIWGYLEAVFSGGEIS---RQLPAEAK 120 (151)
Q Consensus 54 iL~~~~~del~~~led~~~~~v~~We~~L~-----~i~~il~~W~~vQr~W~yLe~IF~~~DI~---~qLP~Es~ 120 (151)
.|.. +++|++..|-|+.++.|...--+|. ...++-|.-+.+-|+|-+=-|.|++.+++ +.+|.|..
T Consensus 172 ~LD~-dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~~Nm~iPgf~sd~~~~~~k~~pTe~h 245 (258)
T KOG1142|consen 172 KLDD-DVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERNFNMEIPGFSSDEKRSKKKALPTEEH 245 (258)
T ss_pred cccH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeeccccccCCCccccccccccccCCcHHH
Confidence 4543 5778888888888877777766665 44577888889999999999999999887 46787664
Done!