Query psy11434
Match_columns 151
No_of_seqs 155 out of 922
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 18:22:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 3.6E-31 1.2E-35 261.7 14.7 136 3-141 141-292 (3245)
2 4akg_A Glutathione S-transfera 99.9 1.6E-27 5.6E-32 234.3 14.2 121 18-141 215-351 (2695)
3 1lbj_A Motilin; A-helix, B-tur 34.4 16 0.00055 18.3 1.1 15 104-118 3-17 (26)
4 3lk4_C CD2-associated protein; 26.2 31 0.0011 17.9 1.3 14 138-151 13-26 (29)
5 3cuq_C Vacuolar protein-sortin 22.7 51 0.0017 24.2 2.5 44 77-120 25-74 (176)
6 2lor_A Transmembrane protein 1 24.9 23 0.00078 24.0 0.0 12 93-104 84-95 (108)
7 1xb4_A VPS25, hypothetical 23. 18.2 69 0.0024 24.0 2.4 44 77-120 22-90 (202)
8 3fjv_A Uncharacterized novel p 16.8 72 0.0025 23.9 2.2 27 88-115 48-74 (194)
9 3aa6_C 23MER peptide from CD2- 14.2 84 0.0029 15.8 1.3 13 139-151 4-16 (26)
10 3teq_A Stromal interaction mol 13.3 2.1E+02 0.0071 19.1 3.5 27 83-109 71-97 (101)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.97 E-value=3.6e-31 Score=261.67 Aligned_cols=136 Identities=21% Similarity=0.425 Sum_probs=125.8
Q ss_pred ccchhhhHhHHHHHHHHHhhHHHHHHHHHHHHHhcccceeeeeecccCCceeecCCChHHHHHHhhhhHH----------
Q psy11434 3 RCIINEGNFNFQDICVSAIKEKDIEAKLNQLISDWSQVNLTFAPFKERGDLFLKPAETTEIIALIEDSIM---------- 72 (151)
Q Consensus 3 ~~~l~~~~~~I~eI~~~A~~E~~iE~~L~~i~~~W~~~~f~~~~~k~~~~~iL~~~~~del~~~led~~~---------- 72 (151)
.++|+.|.+.|.+|+..|++|++||+.|++|++.|+.++|++.+|++ ++++|+++ |+|++.||||++
T Consensus 141 ~~~l~~~~~~i~~I~~~A~~E~~iE~~L~~i~~~W~~~~f~~~~~~~-~~~ll~~~--dei~~~led~~~~l~sm~~S~~ 217 (3245)
T 3vkg_A 141 DSDLARNENIYREVITAAQGEIALEEFLKGVREFWTTLELDLVNYQR-KCKLVRGW--DDLFNKLAEHLNSISAMKMSPY 217 (3245)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCEEEEETT-TEEEEECH--HHHHHHHHHHHHHHHHTTSSTT
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEEEeccC-CeeEeCCH--HHHHHHHHHHHHHHHHHhcCCc
Confidence 47899999999999999999999999999999999999999999996 57889874 899999999998
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcc-hhhhhhCHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy11434 73 -----ATIMEWLKNLSNSLEILESWMMIQNIWGYLEAVFSG-GEISRQLPAEAKKFLEILFNTISVFNNVKTWTE 141 (151)
Q Consensus 73 -----~~v~~We~~L~~i~~il~~W~~vQr~W~yLe~IF~~-~DI~~qLP~Es~~F~~vd~~~~~im~~~~~~~~ 141 (151)
++|..|+++|+.++++|+.|+.|||+|+||||||++ +||++|||.|+++|+.||+.|+.+|+++.+.++
T Consensus 218 ~~~f~~~v~~We~~L~~~~~il~~W~~vQ~~W~yLe~IF~~s~DI~~qLP~E~~rF~~vd~~~~~im~~~~~~~~ 292 (3245)
T 3vkg_A 218 YKVFEEEANHWDDRLNKVRSLLDVWIDVQRRWVYLEGIFSGSGDINQLLPAESTRFKSINSEFIAILKKVSGAPL 292 (3245)
T ss_dssp TTGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CTTTSHHHHHHHHHHHHHHHHHHHHHHHSCB
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999985 499999999999999999999999999987643
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.95 E-value=1.6e-27 Score=234.27 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=110.2
Q ss_pred HHHhhHHHHHHHHHHHHHhcccceeeeeecccCCceeecCCChHHHHHHhhhhHH---------------HHHHHHHHHH
Q psy11434 18 VSAIKEKDIEAKLNQLISDWSQVNLTFAPFKERGDLFLKPAETTEIIALIEDSIM---------------ATIMEWLKNL 82 (151)
Q Consensus 18 ~~A~~E~~iE~~L~~i~~~W~~~~f~~~~~k~~~~~iL~~~~~del~~~led~~~---------------~~v~~We~~L 82 (151)
..|++|+.||+.|++|++.|+.++|++.+|+ +|+++|+++ |+|++.||||++ ++|..|+++|
T Consensus 215 ~~AskE~~iE~~L~~i~~~W~~~~f~~~~~~-~~~~~l~~~--d~i~~~l~d~~~~l~~m~~s~~~~~f~~~~~~w~~~L 291 (2695)
T 4akg_A 215 PPKSDEFVIEKSLNRIKKFWKEAQYEVIEHS-SGLKLVREW--DVLEQACKEDLEELVSMKASNYYKIFEQDCLDLESKL 291 (2695)
T ss_dssp CC----CHHHHHHHHHHHHHTSCCCEEEECS-SSCEEEECT--HHHHHHHHHHHHHHHHTSSCSTTTTTHHHHHHHHHHH
T ss_pred cccchhhhHHHHHHHHHHHhhceEEEEEEec-CCeEEECCH--HHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 4589999999999999999999999999998 478999875 899999999998 9999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhh-cchhhhhhCHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy11434 83 SNSLEILESWMMIQNIWGYLEAVF-SGGEISRQLPAEAKKFLEILFNTISVFNNVKTWTE 141 (151)
Q Consensus 83 ~~i~~il~~W~~vQr~W~yLe~IF-~~~DI~~qLP~Es~~F~~vd~~~~~im~~~~~~~~ 141 (151)
+.++++|+.|+.|||+|+|||||| +++||++|||.|+++|+.||+.|+++|+++.+.++
T Consensus 292 ~~~~~~l~~w~~vQ~~W~yLe~iF~~s~di~~qLp~e~~~F~~vd~~~~~im~~~~~~~~ 351 (2695)
T 4akg_A 292 TKLSEIQVNWVEVQFYWLDLYGILGENLDIQNFLPLETSKFKSLTSEYKMITTRAFQLDT 351 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCSHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCcHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999 56699999999999999999999999999987654
No 3
>1lbj_A Motilin; A-helix, B-turn of type I, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=34.45 E-value=16 Score=18.35 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=11.1
Q ss_pred hhhcchhhhhhCHHH
Q psy11434 104 AVFSGGEISRQLPAE 118 (151)
Q Consensus 104 ~IF~~~DI~~qLP~E 118 (151)
|||..+|+++.-..|
T Consensus 3 PiFt~selqr~qEkE 17 (26)
T 1lbj_A 3 PIFTYGELQRMQEKE 17 (26)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred ceeeHHHHHHHHHHH
Confidence 799999987654444
No 4
>3lk4_C CD2-associated protein; CAPZ, CD2AP, actin filaments, uncapping, actin-filament regulators, protein-protein comple, actin capping, actin- binding; 1.99A {Homo sapiens}
Probab=26.21 E-value=31 Score=17.93 Aligned_cols=14 Identities=21% Similarity=0.463 Sum_probs=10.7
Q ss_pred cccccCCCCCCCCC
Q psy11434 138 TWTEYDQPKKPQKK 151 (151)
Q Consensus 138 ~~~~~~~~~~~~~~ 151 (151)
+..+..+||+|.+.
T Consensus 13 shPTa~RpK~~gRR 26 (29)
T 3lk4_C 13 LHLTANRPKMPGRR 26 (29)
T ss_dssp CCGGGGSCCCCCCC
T ss_pred cCCcccCccccCCC
Confidence 45788899998763
No 5
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=22.75 E-value=51 Score=24.19 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH------hhhhhcchhhhhhCHHHHH
Q psy11434 77 EWLKNLSNSLEILESWMMIQNIWGY------LEAVFSGGEISRQLPAEAK 120 (151)
Q Consensus 77 ~We~~L~~i~~il~~W~~vQr~W~y------Le~IF~~~DI~~qLP~Es~ 120 (151)
.+++.|..=.+++-.|....|.+.- =.|+|.+..|.|.||.|+.
T Consensus 25 Tr~kQl~~W~~LIl~ycr~~k~~~l~~~~~~~~pLF~N~~I~R~Ls~e~~ 74 (176)
T 3cuq_C 25 TRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNNVKLQRKLPVESI 74 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEEEHHHHHTSTTSEETTTTEECCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCeeEeeccccccCCCcCCccccCcCCHHHH
Confidence 3455555556677777777776631 1289999999999999874
No 6
>2lor_A Transmembrane protein 141; helical bundle; NMR {Homo sapiens}
Probab=24.88 E-value=23 Score=24.04 Aligned_cols=12 Identities=33% Similarity=0.720 Sum_probs=10.4
Q ss_pred HHHHHhHHHhhh
Q psy11434 93 MMIQNIWGYLEA 104 (151)
Q Consensus 93 ~~vQr~W~yLe~ 104 (151)
..||..||+||.
T Consensus 84 ~kC~~~Wm~lEt 95 (108)
T 2lor_A 84 EKCNNLWLFLET 95 (108)
Confidence 479999999994
No 7
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=18.24 E-value=69 Score=24.02 Aligned_cols=44 Identities=16% Similarity=0.393 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-hh------------------------hhhcchhhhhhCHHHHH
Q psy11434 77 EWLKNLSNSLEILESWMMIQNIWGY-LE------------------------AVFSGGEISRQLPAEAK 120 (151)
Q Consensus 77 ~We~~L~~i~~il~~W~~vQr~W~y-Le------------------------~IF~~~DI~~qLP~Es~ 120 (151)
.+.+.|..=.+++-.|+...|.|.- ++ |+|.+..|.|.||.|..
T Consensus 22 Tr~~Ql~~W~~LIL~ycr~~ki~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pLF~N~~I~RrLs~e~~ 90 (202)
T 1xb4_A 22 TRRQQISTWIDIISQYCKTKKIWYMSVDGTVINDNELDSGSTDNDDSKKISKNLFNNEDIQRSVSQVFI 90 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEETTSBBCCC-----------------CBTTEETTTTEECCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCeeEeccccccccccccccccccccccccccCCCcCCccccCcCCHHHH
Confidence 4556666667777788888777742 22 89999999999998874
No 8
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=16.79 E-value=72 Score=23.87 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhHHHhhhhhcchhhhhhC
Q psy11434 88 ILESWMMIQNIWGYLEAVFSGGEISRQL 115 (151)
Q Consensus 88 il~~W~~vQr~W~yLe~IF~~~DI~~qL 115 (151)
-...|.++|-. +|+|.||...+|+.-|
T Consensus 48 ~~Tv~~QIQEM-lriEri~~~~~I~~Ei 74 (194)
T 3fjv_A 48 ETTIRYQIHEM-LHIEKIFDEDGIQAEL 74 (194)
T ss_dssp HHHHHHHHHHH-HHHHTCCSHHHHHHHH
T ss_pred hHHHHHHHHHH-HHHhccCCHHHHHHHH
Confidence 45678888887 9999999999887654
No 9
>3aa6_C 23MER peptide from CD2-associated protein; actin capping protein, barbed END regulation, carmil family conformational change, cell motility, CD2AP; 1.90A {Homo sapiens}
Probab=14.19 E-value=84 Score=15.79 Aligned_cols=13 Identities=23% Similarity=0.532 Sum_probs=9.8
Q ss_pred ccccCCCCCCCCC
Q psy11434 139 WTEYDQPKKPQKK 151 (151)
Q Consensus 139 ~~~~~~~~~~~~~ 151 (151)
.....-||||.+.
T Consensus 4 HpTa~RPk~~grR 16 (26)
T 3aa6_C 4 HLTANRPKMPGRR 16 (26)
T ss_dssp CGGGGSCCCTTCC
T ss_pred CcccCCCCCCCCC
Confidence 4567889999763
No 10
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=13.33 E-value=2.1e+02 Score=19.09 Aligned_cols=27 Identities=11% Similarity=-0.002 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhcch
Q psy11434 83 SNSLEILESWMMIQNIWGYLEAVFSGG 109 (151)
Q Consensus 83 ~~i~~il~~W~~vQr~W~yLe~IF~~~ 109 (151)
+.++++.....+.+.+|.-+|.+++=+
T Consensus 71 ~aL~evt~~l~Er~~RW~qIE~l~gf~ 97 (101)
T 3teq_A 71 QALSEATAALRERLHRWQQIEILTGFQ 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 345666677778899999999887643
Done!