Query psy11434
Match_columns 151
No_of_seqs 155 out of 922
Neff 7.0
Searched_HMMs 13730
Date Fri Aug 16 18:22:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11434.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11434hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2o3la1 a.69.4.1 (A:14-95) Hyp 42.3 21 0.0015 21.4 4.5 46 77-122 34-81 (82)
2 d2o4ta1 a.69.4.1 (A:16-105) Un 40.7 17 0.0012 22.2 3.9 48 77-124 30-79 (90)
3 d2hh6a1 a.69.4.1 (A:1-112) Unc 28.7 23 0.0017 22.6 3.2 49 75-123 48-98 (112)
4 d1t6sa1 a.4.5.60 (A:1-85) Segr 15.9 73 0.0053 18.4 3.4 53 12-65 27-81 (85)
5 d1xb4a1 a.4.5.54 (A:2-125) Vac 15.8 41 0.003 21.6 2.3 44 77-120 21-89 (124)
6 d1n0ua4 d.58.11.1 (A:482-560) 15.8 61 0.0044 18.7 3.0 25 21-45 52-76 (79)
7 d1nvpb_ a.32.1.1 (B:) Large ch 13.7 94 0.0068 16.1 3.8 31 9-39 6-40 (43)
8 d1p4ea1 a.60.9.1 (A:2-129) Flp 13.6 1.1E+02 0.0082 18.6 3.9 27 21-50 83-109 (128)
9 d1nh2b_ a.32.1.1 (B:) Large ch 12.6 1.1E+02 0.0077 16.1 3.5 31 9-39 8-42 (46)
10 d1s35a2 a.7.1.1 (A:1169-1273) 11.2 1.2E+02 0.0086 17.3 3.5 35 6-40 49-91 (105)
No 1
>d2o3la1 a.69.4.1 (A:14-95) Hypothetical protein BCE3448 {Bacillus cereus [TaxId: 1396]}
Probab=42.33 E-value=21 Score=21.41 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcch--hhhhhCHHHHHHH
Q psy11434 77 EWLKNLSNSLEILESWMMIQNIWGYLEAVFSGG--EISRQLPAEAKKF 122 (151)
Q Consensus 77 ~We~~L~~i~~il~~W~~vQr~W~yLe~IF~~~--DI~~qLP~Es~~F 122 (151)
.+......+.++|+.+.+.|..=.-.+.||+.. .....|-.+++.|
T Consensus 34 ~~~~~~~il~dil~l~eea~~~G~~v~ev~G~D~~~f~deli~~~k~~ 81 (82)
T d2o3la1 34 NGMDMLHIQYELIDLFEAGAAEGRQVLDITGEDVASFADELVANAKTY 81 (82)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHHHHhcccc
Confidence 356666788899999999999989999999988 6666666666554
No 2
>d2o4ta1 a.69.4.1 (A:16-105) Uncharacterized protein BH3976 {Bacillus halodurans [TaxId: 86665]}
Probab=40.71 E-value=17 Score=22.24 Aligned_cols=48 Identities=15% Similarity=0.042 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcch--hhhhhCHHHHHHHHH
Q psy11434 77 EWLKNLSNSLEILESWMMIQNIWGYLEAVFSGG--EISRQLPAEAKKFLE 124 (151)
Q Consensus 77 ~We~~L~~i~~il~~W~~vQr~W~yLe~IF~~~--DI~~qLP~Es~~F~~ 124 (151)
.|......+.++|+.+.+.|..=.-.+.||+.. .....|-.+++.|..
T Consensus 30 ~~~~~~~il~dil~lleea~~~G~~v~ev~G~D~~~f~deli~~~k~~~d 79 (90)
T d2o4ta1 30 ELNEGIGLLSEILGFFEEGAAAGKGVLDVTGTDVAAFCDALIGDSKTYAD 79 (90)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCHHHHHCSCHHHHHHHTTSCSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHHHhhchhhHH
Confidence 466677889999999999999999999999988 777777777665543
No 3
>d2hh6a1 a.69.4.1 (A:1-112) Uncharacterized protein BH3980 {Bacillus halodurans [TaxId: 86665]}
Probab=28.67 E-value=23 Score=22.56 Aligned_cols=49 Identities=10% Similarity=0.075 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcch--hhhhhCHHHHHHHH
Q psy11434 75 IMEWLKNLSNSLEILESWMMIQNIWGYLEAVFSGG--EISRQLPAEAKKFL 123 (151)
Q Consensus 75 v~~We~~L~~i~~il~~W~~vQr~W~yLe~IF~~~--DI~~qLP~Es~~F~ 123 (151)
...|......+.++|+.+.+.|..=...+.||+.. ..+..|-.+++++.
T Consensus 48 ~~~~~~~~~il~~Il~l~eea~~~G~~v~~v~G~D~~~f~deli~~~~~~~ 98 (112)
T d2hh6a1 48 PTDWQDTKRIFGGILDLFEEGAAEGKKVTDLTGEDVAAFCDELMKDTKTWM 98 (112)
T ss_dssp BCSHHHHHHHHHHHHHHHHHHHHTTCCHHHHHCSCHHHHHHHHHTTSCBHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHHHHHhhhhH
Confidence 35577778899999999999999999999999988 66666666665543
No 4
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=15.92 E-value=73 Score=18.45 Aligned_cols=53 Identities=13% Similarity=0.333 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccc--ceeeeeecccCCceeecCCChHHHHH
Q psy11434 12 NFQDICVSAIKEKDIEAKLNQLISDWSQ--VNLTFAPFKERGDLFLKPAETTEIIA 65 (151)
Q Consensus 12 ~I~eI~~~A~~E~~iE~~L~~i~~~W~~--~~f~~~~~k~~~~~iL~~~~~del~~ 65 (151)
+|.++....-.+..++..|+++...|+. .-|.+....+ |..+....+..+.+.
T Consensus 27 ~L~~~l~~~~~~~~i~~~l~~L~~~y~~~~~g~el~~~~~-gy~~~tk~e~~~~v~ 81 (85)
T d1t6sa1 27 TLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAG-GYRFLTEPEFADLVR 81 (85)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETT-EEEEEECGGGHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHhcCCCcEEEEEECC-EEEEEEhHHHHHHHH
Confidence 3444443323456799999999999975 5677777653 443333333444433
No 5
>d1xb4a1 a.4.5.54 (A:2-125) Vacuolar protein sorting-associated protein VPS25 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.81 E-value=41 Score=21.58 Aligned_cols=44 Identities=16% Similarity=0.352 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-------------------------hhhhhcchhhhhhCHHHHH
Q psy11434 77 EWLKNLSNSLEILESWMMIQNIWGY-------------------------LEAVFSGGEISRQLPAEAK 120 (151)
Q Consensus 77 ~We~~L~~i~~il~~W~~vQr~W~y-------------------------Le~IF~~~DI~~qLP~Es~ 120 (151)
.+.+.|..=.+++-.|....|.|.- ..|+|....|.|.||.|..
T Consensus 21 Tr~kQl~~W~~LIL~ycr~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pLF~N~~I~R~Ls~e~~ 89 (124)
T d1xb4a1 21 TRRQQISTWIDIISQYCKTKKIWYMSVDGTVINDNELDSGSTDNDDSKKISKNLFNNEDIQRSVSQVFI 89 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEETTSBBCCC-----------------CBTTEETTTTEECCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhceeeeeccccccccccccccccccccccccCCCCccCcccCCcCCHHHH
Confidence 3455666666777777777776632 3459999999999998764
No 6
>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.80 E-value=61 Score=18.67 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHhcccceeeee
Q psy11434 21 IKEKDIEAKLNQLISDWSQVNLTFA 45 (151)
Q Consensus 21 ~~E~~iE~~L~~i~~~W~~~~f~~~ 45 (151)
-+|..||-.++++++.+.++++.+.
T Consensus 52 ~GelHLev~~~rL~~~f~~vev~~~ 76 (79)
T d1n0ua4 52 TGELHLEICLQDLEHDHAGVPLKIS 76 (79)
T ss_dssp SSHHHHHHHHHHHHHTTSCSCEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCceEEeC
Confidence 4799999999999998876766654
No 7
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.68 E-value=94 Score=16.14 Aligned_cols=31 Identities=16% Similarity=0.036 Sum_probs=21.5
Q ss_pred hHhHHHHHHHHHhhHHHH----HHHHHHHHHhccc
Q psy11434 9 GNFNFQDICVSAIKEKDI----EAKLNQLISDWSQ 39 (151)
Q Consensus 9 ~~~~I~eI~~~A~~E~~i----E~~L~~i~~~W~~ 39 (151)
|..-|.++++.-+.++.= |+.|.+++..|+.
T Consensus 6 Y~~VIedVI~~vR~~F~~~GvDe~vL~eLk~~We~ 40 (43)
T d1nvpb_ 6 YRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWEN 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 556677777766654432 5688999999974
No 8
>d1p4ea1 a.60.9.1 (A:2-129) Flp recombinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.59 E-value=1.1e+02 Score=18.64 Aligned_cols=27 Identities=33% Similarity=0.669 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHhcccceeeeeecccC
Q psy11434 21 IKEKDIEAKLNQLISDWSQVNLTFAPFKER 50 (151)
Q Consensus 21 ~~E~~iE~~L~~i~~~W~~~~f~~~~~k~~ 50 (151)
++--.+|.+|+++.-.|+ |.+.||...
T Consensus 83 qkatileaslkklipawe---ftiipyngq 109 (128)
T d1p4ea1 83 QKATILEASLKKLIPAWE---FTIIPYNGQ 109 (128)
T ss_dssp SCHHHHHHHHHHHSTTCE---EEEEESSCC
T ss_pred hhhHHHHHHHHhhcccce---EEEeccCCc
Confidence 345578999999999895 888998743
No 9
>d1nh2b_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.58 E-value=1.1e+02 Score=16.13 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=21.5
Q ss_pred hHhHHHHHHHHHhhHHHH----HHHHHHHHHhccc
Q psy11434 9 GNFNFQDICVSAIKEKDI----EAKLNQLISDWSQ 39 (151)
Q Consensus 9 ~~~~I~eI~~~A~~E~~i----E~~L~~i~~~W~~ 39 (151)
|..-|.++++.-+.++.= |..|.+++..|+.
T Consensus 8 Y~~VI~dVI~~vR~dF~~~Gvde~vL~eLk~~We~ 42 (46)
T d1nh2b_ 8 YEIIVESVVNEVREDFENAGIDEQTLQDLKNIWQK 42 (46)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 556677777766654433 5688899999974
No 10
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.24 E-value=1.2e+02 Score=17.31 Aligned_cols=35 Identities=9% Similarity=0.019 Sum_probs=21.5
Q ss_pred hhhhHhHHHHHHHHHh--------hHHHHHHHHHHHHHhcccc
Q psy11434 6 INEGNFNFQDICVSAI--------KEKDIEAKLNQLISDWSQV 40 (151)
Q Consensus 6 l~~~~~~I~eI~~~A~--------~E~~iE~~L~~i~~~W~~~ 40 (151)
|..+.+.|..+...|. .-..|...+..|...|..+
T Consensus 49 l~~~~~~v~~l~~~a~~L~~~~~~~~~~I~~~~~~l~~rw~~l 91 (105)
T d1s35a2 49 MENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKN 91 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHH
Confidence 4455666666666664 2335677777777777654
Done!