RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11434
(151 letters)
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 113 bits (285), Expect = 3e-30
Identities = 27/129 (20%), Positives = 59/129 (45%), Gaps = 19/129 (14%)
Query: 13 FQDICVSAIKEKDIEAKLNQLISDWSQVNLTFAPFKERGDLFLKPAETTEIIALIEDSIM 72
++++ +A E +E L + W+ + L ++ + L ++ + ++ + + +
Sbjct: 151 YREVITAAQGEIALEEFLKGVREFWTTLELDLVNYQRKCKL-VRGWD--DLFNKLAEHLN 207
Query: 73 AT---------------IMEWLKNLSNSLEILESWMMIQNIWGYLEAVFSG-GEISRQLP 116
+ W L+ +L+ W+ +Q W YLE +FSG G+I++ LP
Sbjct: 208 SISAMKMSPYYKVFEEEANHWDDRLNKVRSLLDVWIDVQRRWVYLEGIFSGSGDINQLLP 267
Query: 117 AEAKKFLEI 125
AE+ +F I
Sbjct: 268 AESTRFKSI 276
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 103 bits (258), Expect = 1e-26
Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 19/128 (14%)
Query: 14 QDICVSAIKEKDIEAKLNQLISDWSQVNLTFAPFKERGDLFLKPAETTEIIALIEDSIMA 73
E IE LN++ W + L ++ + + ++ +
Sbjct: 211 GGDHPPKSDEFVIEKSLNRIKKFWKEAQYEVIEHSSGLKL-VREWD--VLEQACKEDLEE 267
Query: 74 T---------------IMEWLKNLSNSLEILESWMMIQNIWGYLEAVFSGGE-ISRQLPA 117
++ L+ EI +W+ +Q W L + I LP
Sbjct: 268 LVSMKASNYYKIFEQDCLDLESKLTKLSEIQVNWVEVQFYWLDLYGILGENLDIQNFLPL 327
Query: 118 EAKKFLEI 125
E KF +
Sbjct: 328 ETSKFKSL 335
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.009
Identities = 26/171 (15%), Positives = 51/171 (29%), Gaps = 43/171 (25%)
Query: 4 CIINEGNFNFQDICVSAIKEK--DIEAKLNQLISDWSQVN-L----------TFAPFKER 50
+ N+ + S IK + I+A+L +L+ N L + F
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--- 262
Query: 51 GDLFLKPAETTEIIALIEDSIMA------TIMEWLKNLS--NSLEILESWMMIQNIWGYL 102
+L K TT + D + A ++ L+ +L ++
Sbjct: 263 -NLSCKILLTTRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--------- 311
Query: 103 EAVFSGGEISRQLPAEAKKFLEILFNTI--SVFNNVKTWTEYDQPKKPQKK 151
+ LP E + I S+ + + TW + +
Sbjct: 312 ------DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Score = 29.4 bits (65), Expect = 0.43
Identities = 23/145 (15%), Positives = 51/145 (35%), Gaps = 38/145 (26%)
Query: 6 INEGNFNFQDIC---VSAIKE----KDIEAKLNQLISDWSQVNLTFAPFKERGDLFLKPA 58
E + ++DI A + KD++ ++S +E + +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK-----------EEIDHIIMSKD 59
Query: 59 ETTEIIALIEDSIMATIMEWLKNLSNSLEILESWM--MIQNIWGYLEAVFSGGEISRQLP 116
+ + L W LS E+++ ++ +++ + +L + RQ
Sbjct: 60 AVSGTLRLF----------WTL-LSKQEEMVQKFVEEVLRINYKFLMSPIK--TEQRQPS 106
Query: 117 AEAKKFLE---ILFNTISVFN--NV 136
+ ++E L+N VF NV
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNV 131
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.036
Identities = 29/130 (22%), Positives = 44/130 (33%), Gaps = 49/130 (37%)
Query: 43 TFAPFKERGDLFLKPAETTEIIALIEDSIMAT--------IMEWLKNLSN--SLEILE-- 90
T+ DL AET + LI ++ A I+EWL+N SN + L
Sbjct: 179 TYHVLVG--DLIKFSAET--LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 91 --SWMMI---Q--------NIWGY----LEAVFSG------GEISRQLPAEAK------- 120
S +I Q + G+ L + G G ++ AE
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 121 ---KFLEILF 127
K + +LF
Sbjct: 295 SVRKAITVLF 304
Score = 27.7 bits (61), Expect = 1.6
Identities = 14/102 (13%), Positives = 33/102 (32%), Gaps = 42/102 (41%)
Query: 86 LEILESWMMIQNIW----GYLEAV--FSGGEISRQLPAE-------------AKKFLEIL 126
+++ ++ Q++W + + FS +I P + + ++
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 127 FNTIS--------VFNNVK------TW---------TEYDQP 145
F TI +F + T+ T++ QP
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
Score = 25.8 bits (56), Expect = 7.6
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 31/87 (35%)
Query: 52 DLFLK--PAETTEIIALIEDSIMATIMEWLKNLSNSLEILESWMMIQNIWGYLEAVFSGG 109
+ F K P T A E + E++ ++ GY
Sbjct: 35 EQFNKILPEPTEGFAADDEPT-------------TPAELVGKFL------GY-------- 67
Query: 110 EISRQL-PAEAKKFLEILFNTISVFNN 135
+S + P++ +F ++L ++ F N
Sbjct: 68 -VSSLVEPSKVGQFDQVLNLCLTEFEN 93
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 26.5 bits (59), Expect = 4.0
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 16/54 (29%)
Query: 36 DWSQVNLTFAPFKERGDLFLKPAETTEIIALIEDSIMATIMEWL-----KNLSN 84
+W P +R +FLK A+ ++ A ++ K +
Sbjct: 115 EWDLK-----PMADRAQVFLKAAD------MLSGPRRAEVLAKTMVGQGKTVIQ 157
>2cpm_A Sperm-associated antigen 7; R3H domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 24.7 bits (53), Expect = 7.4
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 24 KDIEAKLNQLISDWSQVNLTFAPF 47
K +E +++ I D Q+ F P
Sbjct: 14 KRMEKEVSDFIQDSGQIKKKFQPM 37
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 25.6 bits (56), Expect = 8.0
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 117 AEAKKFLEILFNTISVFNNVKTWTEY 142
+E+K LE LFN ++W
Sbjct: 641 SESKLSLETLFNRWH----SESWANQ 662
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.397
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,274,470
Number of extensions: 122705
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 17
Length of query: 151
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,328,508
Effective search space: 285681528
Effective search space used: 285681528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)