RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11434
         (151 letters)



>d1m1ha2 d.58.42.1 (A:5-50,A:132-186) N-utilization substance G
           protein NusG, N-terminal domain {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 101

 Score = 24.0 bits (52), Expect = 4.6
 Identities = 7/35 (20%), Positives = 11/35 (31%)

Query: 90  ESWMMIQNIWGYLEAVFSGGEISRQLPAEAKKFLE 124
           +  M I+        V  GG+       E +  L 
Sbjct: 63  KLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILN 97


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0604    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 570,404
Number of extensions: 24392
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 3
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)