BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11439
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 125 bits (314), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 67/83 (80%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDGMDIL VREA RFA +CRS KGPIL+E TYRY GHSMSDPG SYRTR+EIQEVR
Sbjct: 246 VDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSK 305
Query: 66 RDPISSLKDKILNASLVTPEELK 88
DPI LKD+++N++L + EELK
Sbjct: 306 SDPIMLLKDRMVNSNLASVEELK 328
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 125 bits (313), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 67/83 (80%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDGMDIL VREA RFA +CRS KGPIL+E TYRY GHSMSDPG SYRTR+EIQEVR
Sbjct: 246 VDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSK 305
Query: 66 RDPISSLKDKILNASLVTPEELK 88
DPI LKD+++N++L + EELK
Sbjct: 306 SDPIMLLKDRMVNSNLASVEELK 328
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 67/83 (80%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDGMDIL VREA RFA +CRS KGPIL+E TYRY GHSMSDPG +YRTR+EIQEVR
Sbjct: 246 VDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVAYRTREEIQEVRSK 305
Query: 66 RDPISSLKDKILNASLVTPEELK 88
DPI LKD+++N++L + EELK
Sbjct: 306 SDPIMLLKDRMVNSNLASVEELK 328
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 123 bits (309), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 66/83 (79%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDGMDIL VREA RFA +CRS KGPIL+E TYRY GH MSDPG SYRTR+EIQEVR
Sbjct: 229 VDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSK 288
Query: 66 RDPISSLKDKILNASLVTPEELK 88
DPI LKD+++N++L + EELK
Sbjct: 289 SDPIMLLKDRMVNSNLASVEELK 311
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 66/83 (79%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDGMDIL VREA RFA +CRS KGPIL+E TYRY GH MSDPG +YRTR+EIQEVR
Sbjct: 246 VDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHXMSDPGVAYRTREEIQEVRSK 305
Query: 66 RDPISSLKDKILNASLVTPEELK 88
DPI LKD+++N++L + EELK
Sbjct: 306 SDPIMLLKDRMVNSNLASVEELK 328
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 117 bits (292), Expect = 2e-27, Method: Composition-based stats.
Identities = 56/83 (67%), Positives = 63/83 (75%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDG DIL VREA RFA +CRS KGPIL E TYRY GHS SDPG SYRTR+EIQEVR
Sbjct: 229 VDGXDILCVREATRFAAAYCRSGKGPILXELQTYRYHGHSXSDPGVSYRTREEIQEVRSK 288
Query: 66 RDPISSLKDKILNASLVTPEELK 88
DPI LKD+ +N++L + EELK
Sbjct: 289 SDPIXLLKDRXVNSNLASVEELK 311
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLX|A Chain A, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
pdb|1U5B|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|A Chain A, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDG D+ AV A + A ++ P L+E TYR HS SD ++YR+ DE+ +
Sbjct: 253 VDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQ 312
Query: 66 RDPISSLKDKILNASLVTPEELK 88
PIS L+ +L+ E+ K
Sbjct: 313 DHPISRLRHYLLSQGWWDEEQEK 335
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|C Chain C, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 367
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDGMD+LA + AV R +GP L+E YRY HS +D + YR ++E+ R+
Sbjct: 235 VDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRK- 293
Query: 66 RDPISSLK 73
+DPI +
Sbjct: 294 KDPIPRFR 301
>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDG D+ AV A + A ++ P L+E TYR HS SD ++YR+ DE+ +
Sbjct: 253 VDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVGYWDKQ 312
Query: 66 RDPISSLKDKILNASLVTPEELK 88
PIS L+ +L+ E+ K
Sbjct: 313 DHPISRLRHYLLSQGWWDEEQEK 335
>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|C Chain C, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 400
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDG D+ AV A + A ++ P L+E TYR HS SD ++YR DE+ +
Sbjct: 253 VDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRPVDEVNYWDKQ 312
Query: 66 RDPISSLKDKILNASLVTPEELK 88
PIS L+ +L+ E+ K
Sbjct: 313 DHPISRLRHYLLSQGWWDEEQEK 335
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDG D+ AV A + A ++ P L+E TYR H+ SD ++YR+ DE+ +
Sbjct: 253 VDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHNTSDDSSAYRSVDEVNYWDKQ 312
Query: 66 RDPISSLKDKILNASLVTPEELK 88
PIS L+ +L+ E+ K
Sbjct: 313 DHPISRLRHYLLSQGWWDEEQEK 335
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDG D+ AV A + A ++ P L+E TYR HS SD +++R+ DE+ +
Sbjct: 253 VDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAFRSVDEVNYWDKQ 312
Query: 66 RDPISSLKDKILNASLVTPEELK 88
PIS L+ +L+ E+ K
Sbjct: 313 DHPISRLRHYLLSQGWWDEEQEK 335
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDG D+ AV A + A ++ P L+E TYR H SD ++YR+ DE+ +
Sbjct: 253 VDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHQTSDDSSAYRSVDEVNYWDKQ 312
Query: 66 RDPISSLKDKILNASLVTPEELK 88
PIS L+ +L+ E+ K
Sbjct: 313 DHPISRLRHYLLSQGWWDEEQEK 335
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDG D+ AV A + A ++ P L+E TYR H SD ++YR+ DE+ +
Sbjct: 253 VDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHXTSDDSSAYRSVDEVNYWDKQ 312
Query: 66 RDPISSLKDKILNASLVTPEELK 88
PIS L+ +L+ E+ K
Sbjct: 313 DHPISRLRHYLLSQGWWDEEQEK 335
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDG D+ AV A + A ++ P L+E TYR H SD ++YR+ DE+ +
Sbjct: 253 VDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHETSDDSSAYRSVDEVNYWDKQ 312
Query: 66 RDPISSLKDKILNASLVTPEELK 88
PIS L+ +L+ E+ K
Sbjct: 313 DHPISRLRHYLLSQGWWDEEQEK 335
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDG D+ AV A + A ++ P L+E TYR H SD ++YR+ DE+ +
Sbjct: 253 VDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHDTSDDSSAYRSVDEVNYWDKQ 312
Query: 66 RDPISSLKDKILNASLVTPEELK 88
PIS L+ +L+ E+ K
Sbjct: 313 DHPISRLRHYLLSQGWWDEEQEK 335
>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|C Chain C, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|E Chain E, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|G Chain G, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 410
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDG D +AV A+R+A R GP L+E TYR HS SD + YR D+
Sbjct: 274 VDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHF-PL 332
Query: 66 RDPISSLKDKILNASLVTPEE 86
DPI+ LK ++ + EE
Sbjct: 333 GDPIARLKQHLIKIGHWSEEE 353
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 407
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDG D +AV A+R+A R GP L+E TYR HS SD + YR D+
Sbjct: 273 VDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHF-PL 331
Query: 66 RDPISSLKDKILNASLVTPEE 86
DPI+ LK ++ + EE
Sbjct: 332 GDPIARLKQHLIKIGHWSEEE 352
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 5 EVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS-DPGTSYRTRDEIQEVR 63
+VDGMD LAV A + A + +GP L+ET +RY H+MS D T YR++ E++
Sbjct: 232 QVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSK-ELENEW 290
Query: 64 QTRDPISSLKDKILNASLVTPEE 86
+DP+ + K L A + EE
Sbjct: 291 AKKDPLVRFR-KFLEAKGLWSEE 312
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 5 EVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS-DPGTSYRTRDEIQEVR 63
+VDGMD LAV A + A + +GP L+ET +RY H+MS D T YR++ E++
Sbjct: 232 QVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSK-ELENEW 290
Query: 64 QTRDPISSLKDKILNASLVTPEE 86
+DP+ + K L A + EE
Sbjct: 291 AKKDPLVRFR-KFLEAKGLWSEE 312
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 5 EVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS-DPGTSYRTRDEIQEVR 63
+VDGMD LAV A + A + +GP L+ET +RY H+MS D T YR++ E++
Sbjct: 233 QVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSK-ELENEW 291
Query: 64 QTRDPISSLKDKILNASLVTPEE 86
+DP+ + K L A + EE
Sbjct: 292 AKKDPLVRFR-KFLEAKGLWSEE 313
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 5 EVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS-DPGTSYRTRDEIQEVR 63
+VDGMD LAV A + A + +GP L+ET +RY H+MS D T YR++ E++
Sbjct: 233 QVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSK-ELENEW 291
Query: 64 QTRDPISSLKDKILNASLVTPEE 86
+DP+ + K L A + EE
Sbjct: 292 AKKDPLVRFR-KFLEAKGLWSEE 313
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V1R|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDG D+ AV A + A ++ P L+E TYR S SD ++YR+ DE+ +
Sbjct: 253 VDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAYRSVDEVNYWDKQ 312
Query: 66 RDPISSLKDKILNASLVTPEELK 88
PIS L+ +L+ E+ K
Sbjct: 313 DHPISRLRHYLLSQGWWDEEQEK 335
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDG D+ AV A + A ++ P L+E TYR S SD +++R+ DE+ +
Sbjct: 253 VDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQ 312
Query: 66 RDPISSLKDKILNASLVTPEELK 88
PIS L+ +L+ E+ K
Sbjct: 313 DHPISRLRHYLLSQGWWDEEQEK 335
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDG D+ AV A + A ++ P L+E TYR S SD +++R+ DE+ +
Sbjct: 253 VDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQ 312
Query: 66 RDPISSLKDKILNASLVTPEELK 88
PIS L+ +L+ E+ K
Sbjct: 313 DHPISRLRHYLLSQGWWDEEQEK 335
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDG D+ AV A + A ++ P L+E TYR S SD +++R+ DE+ +
Sbjct: 253 VDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQ 312
Query: 66 RDPISSLKDKILNASLVTPEELK 88
PIS L+ +L+ E+ K
Sbjct: 313 DHPISRLRHYLLSQGWWDEEQEK 335
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDG D+ AV A + A ++ P L+E TYR S SD +++R+ DE+ +
Sbjct: 253 VDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQ 312
Query: 66 RDPISSLKDKILNASLVTPEELK 88
PIS L+ +L+ E+ K
Sbjct: 313 DHPISRLRHYLLSQGWWDEEQEK 335
>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDG D+ AV A + A ++ P L+E TY S SD ++YR+ DE+ +
Sbjct: 253 VDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYAIGHASTSDDSSAYRSVDEVNYWDKQ 312
Query: 66 RDPISSLKDKILNASLVTPEELK 88
PIS L+ +L+ E+ K
Sbjct: 313 DHPISRLRHYLLSQGWWDEEQEK 335
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDG D+ AV A + A ++ P L+E TYR S S +++R+ DE+ +
Sbjct: 253 VDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSADSSAFRSVDEVNYWDKQ 312
Query: 66 RDPISSLKDKILNASLVTPEELK 88
PIS L+ +L+ E+ K
Sbjct: 313 DHPISRLRHYLLSQGWWDEEQEK 335
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSD 48
V+G D A AR AV+ ++ K ++++ YR GH+ D
Sbjct: 350 VNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGD 392
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSD 48
V+G D A AR AV+ ++ K ++++ YR GH+ D
Sbjct: 595 VNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGD 637
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,574,023
Number of Sequences: 62578
Number of extensions: 82627
Number of successful extensions: 199
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 31
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)