Query psy11439
Match_columns 91
No_of_seqs 154 out of 1064
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 18:29:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11439.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11439hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1071 AcoA Pyruvate/2-oxoglu 100.0 3.1E-35 6.8E-40 218.2 11.9 89 1-90 223-311 (358)
2 PF00676 E1_dh: Dehydrogenase 100.0 1.6E-32 3.4E-37 200.1 10.6 90 1-90 187-276 (300)
3 KOG0225|consensus 100.0 6.6E-31 1.4E-35 193.0 10.7 90 1-90 249-338 (394)
4 PLN02269 Pyruvate dehydrogenas 100.0 6.9E-30 1.5E-34 190.4 12.0 89 1-90 222-310 (362)
5 CHL00149 odpA pyruvate dehydro 100.0 2.8E-28 6E-33 180.5 12.3 88 1-90 221-308 (341)
6 TIGR03182 PDH_E1_alph_y pyruva 100.0 5.6E-28 1.2E-32 177.1 11.7 88 1-90 196-283 (315)
7 PRK09404 sucA 2-oxoglutarate d 100.0 6.7E-28 1.4E-32 195.3 12.3 89 1-90 410-498 (924)
8 PLN02374 pyruvate dehydrogenas 99.9 1.6E-27 3.4E-32 181.1 11.7 88 1-90 287-374 (433)
9 cd02000 TPP_E1_PDC_ADC_BCADC T 99.9 3.5E-27 7.6E-32 171.0 12.3 89 1-90 190-278 (293)
10 TIGR03181 PDH_E1_alph_x pyruva 99.9 1.2E-26 2.5E-31 171.7 12.3 89 1-90 208-296 (341)
11 TIGR00239 2oxo_dh_E1 2-oxoglut 99.9 6.4E-27 1.4E-31 189.4 11.8 89 1-90 411-499 (929)
12 KOG1182|consensus 99.9 2.3E-26 4.9E-31 168.8 6.6 87 1-87 280-366 (432)
13 PRK12270 kgd alpha-ketoglutara 99.8 1.8E-20 3.8E-25 152.0 10.5 89 1-90 715-803 (1228)
14 cd02016 TPP_E1_OGDC_like Thiam 99.8 1.3E-20 2.8E-25 135.9 7.2 56 1-57 208-263 (265)
15 KOG0450|consensus 99.6 1.7E-14 3.6E-19 114.6 10.4 90 1-91 469-558 (1017)
16 KOG0451|consensus 99.5 1.2E-14 2.6E-19 113.6 6.4 87 2-90 388-475 (913)
17 COG0567 SucA 2-oxoglutarate de 99.5 3.8E-14 8.2E-19 114.6 8.5 89 1-90 393-481 (906)
18 PTZ00089 transketolase; Provis 98.2 5.8E-06 1.2E-10 66.3 8.0 60 2-64 213-277 (661)
19 PRK12315 1-deoxy-D-xylulose-5- 98.1 6.1E-06 1.3E-10 65.2 5.4 41 1-45 208-249 (581)
20 PRK05899 transketolase; Review 98.0 3.8E-05 8.3E-10 61.0 7.7 58 2-63 215-276 (624)
21 PRK12754 transketolase; Review 97.7 0.00016 3.5E-09 58.2 7.9 41 2-45 211-252 (663)
22 TIGR00232 tktlase_bact transke 97.7 9.6E-05 2.1E-09 59.3 5.6 41 1-45 206-248 (653)
23 PRK12753 transketolase; Review 97.5 0.00039 8.4E-09 56.0 6.5 42 2-46 211-253 (663)
24 cd02012 TPP_TK Thiamine pyroph 97.3 0.00058 1.3E-08 48.7 5.3 43 2-47 193-235 (255)
25 PLN02790 transketolase 97.2 0.001 2.2E-08 53.5 6.3 42 1-45 201-244 (654)
26 cd02007 TPP_DXS Thiamine pyrop 97.0 0.0017 3.6E-08 44.9 5.0 33 5-41 160-192 (195)
27 cd02011 TPP_PK Thiamine pyroph 96.5 0.004 8.6E-08 44.4 3.8 27 1-27 149-175 (227)
28 TIGR00204 dxs 1-deoxy-D-xylulo 96.3 0.0082 1.8E-07 48.1 5.1 37 5-45 244-280 (617)
29 PRK05444 1-deoxy-D-xylulose-5- 96.2 0.012 2.6E-07 46.6 5.6 40 2-45 208-248 (580)
30 PRK05261 putative phosphoketol 95.1 0.044 9.5E-07 45.3 5.1 39 2-40 230-284 (785)
31 COG0021 TktA Transketolase [Ca 95.1 0.042 9E-07 44.5 4.6 32 5-39 217-248 (663)
32 cd00568 TPP_enzymes Thiamine p 95.0 0.057 1.2E-06 35.2 4.6 31 2-38 138-168 (168)
33 PF00456 Transketolase_N: Tran 95.0 0.064 1.4E-06 40.1 5.2 40 3-45 209-249 (332)
34 cd03372 TPP_ComE Thiamine pyro 94.5 0.27 5.9E-06 33.3 7.0 48 2-60 125-172 (179)
35 PF13292 DXP_synthase_N: 1-deo 94.0 0.04 8.6E-07 40.3 2.1 30 5-38 241-270 (270)
36 cd02015 TPP_AHAS Thiamine pyro 93.6 0.19 4.1E-06 34.0 4.9 33 2-40 143-175 (186)
37 COG3959 Transketolase, N-termi 93.1 0.18 3.9E-06 36.3 4.2 35 2-39 207-241 (243)
38 PRK12571 1-deoxy-D-xylulose-5- 93.1 0.16 3.5E-06 41.0 4.4 40 3-45 249-289 (641)
39 PRK07524 hypothetical protein; 92.9 0.25 5.4E-06 38.5 5.2 36 3-44 499-534 (535)
40 PLN02234 1-deoxy-D-xylulose-5- 92.4 0.41 8.8E-06 38.9 5.8 42 3-46 286-328 (641)
41 cd02013 TPP_Xsc_like Thiamine 91.9 0.46 1E-05 32.5 4.9 36 3-41 146-181 (196)
42 PRK08327 acetolactate synthase 91.8 0.4 8.8E-06 37.8 5.2 35 2-38 532-566 (569)
43 cd02004 TPP_BZL_OCoD_HPCL Thia 91.6 0.48 1E-05 31.5 4.7 31 2-38 141-171 (172)
44 COG1154 Dxs Deoxyxylulose-5-ph 91.5 0.29 6.3E-06 39.6 4.0 32 5-40 249-280 (627)
45 cd02002 TPP_BFDC Thiamine pyro 91.4 0.53 1.1E-05 31.3 4.8 31 2-38 148-178 (178)
46 PF02775 TPP_enzyme_C: Thiamin 91.4 0.33 7.2E-06 31.6 3.6 31 2-36 123-153 (153)
47 PLN02582 1-deoxy-D-xylulose-5- 91.4 0.29 6.3E-06 39.9 4.0 39 5-45 288-326 (677)
48 cd07038 TPP_PYR_PDC_IPDC_like 89.5 0.74 1.6E-05 30.7 4.1 28 9-36 133-160 (162)
49 PLN02225 1-deoxy-D-xylulose-5- 89.5 0.49 1.1E-05 38.8 3.8 32 5-38 332-363 (701)
50 cd02014 TPP_POX Thiamine pyrop 88.2 1.4 3E-05 29.5 4.8 22 19-40 153-174 (178)
51 cd07039 TPP_PYR_POX Pyrimidine 87.1 1.5 3.2E-05 29.3 4.3 28 9-36 129-156 (164)
52 cd02008 TPP_IOR_alpha Thiamine 86.5 2 4.3E-05 28.8 4.8 33 2-38 143-176 (178)
53 cd02017 TPP_E1_EcPDC_like Thia 86.0 4.1 8.9E-05 31.4 6.7 66 8-77 289-360 (386)
54 PRK06163 hypothetical protein; 85.9 3.7 8E-05 28.5 6.0 43 10-61 148-190 (202)
55 TIGR00759 aceE pyruvate dehydr 85.0 4.8 0.0001 34.1 7.1 39 4-45 356-394 (885)
56 cd02005 TPP_PDC_IPDC Thiamine 84.5 2.6 5.5E-05 28.5 4.6 30 8-40 146-175 (183)
57 TIGR03186 AKGDH_not_PDH alpha- 84.2 4.4 9.6E-05 34.3 6.6 34 7-43 359-392 (889)
58 cd02006 TPP_Gcl Thiamine pyrop 84.2 2.2 4.7E-05 29.2 4.2 31 10-40 165-195 (202)
59 cd07035 TPP_PYR_POX_like Pyrim 83.9 2.3 5E-05 27.4 4.1 28 9-36 125-153 (155)
60 PRK08266 hypothetical protein; 83.7 3.1 6.7E-05 32.5 5.3 26 19-44 505-530 (542)
61 PF09851 SHOCT: Short C-termin 83.5 1.8 4E-05 21.3 2.7 22 67-89 3-24 (31)
62 cd07034 TPP_PYR_PFOR_IOR-alpha 83.1 2.2 4.8E-05 27.7 3.8 30 7-36 129-158 (160)
63 cd02003 TPP_IolD Thiamine pyro 82.9 3.7 8.1E-05 28.1 5.0 22 19-40 164-185 (205)
64 PRK07525 sulfoacetaldehyde ace 82.2 1.9 4E-05 34.2 3.6 38 2-42 528-565 (588)
65 PRK09405 aceE pyruvate dehydro 82.0 5 0.00011 34.0 6.1 38 4-44 362-399 (891)
66 cd03371 TPP_PpyrDC Thiamine py 81.5 8.7 0.00019 26.1 6.3 44 10-60 138-181 (188)
67 cd06586 TPP_enzyme_PYR Pyrimid 80.4 5 0.00011 25.5 4.6 29 8-36 124-152 (154)
68 PRK13012 2-oxoacid dehydrogena 80.1 11 0.00024 32.1 7.5 33 8-43 374-406 (896)
69 PF10415 FumaraseC_C: Fumarase 79.6 2.3 5E-05 23.7 2.5 20 72-91 28-47 (55)
70 cd02001 TPP_ComE_PpyrDC Thiami 79.4 6.5 0.00014 26.0 5.0 26 9-38 129-154 (157)
71 PRK13683 hypothetical protein; 78.9 4.4 9.5E-05 24.9 3.7 33 7-43 21-53 (87)
72 TIGR03845 sulfopyru_alph sulfo 78.3 4 8.7E-05 27.2 3.8 27 9-36 126-152 (157)
73 PRK11269 glyoxylate carboligas 77.8 5.7 0.00012 31.5 5.0 32 9-40 526-557 (591)
74 cd07037 TPP_PYR_MenD Pyrimidin 77.7 4.1 8.9E-05 27.3 3.7 23 14-36 137-160 (162)
75 PRK07092 benzoylformate decarb 77.6 5.1 0.00011 31.3 4.7 22 17-38 508-529 (530)
76 cd02010 TPP_ALS Thiamine pyrop 77.4 4.2 9.1E-05 27.3 3.7 27 10-40 145-171 (177)
77 PRK06546 pyruvate dehydrogenas 76.3 6.6 0.00014 31.1 5.0 32 3-40 500-531 (578)
78 TIGR03457 sulphoacet_xsc sulfo 75.4 5.5 0.00012 31.5 4.4 28 9-36 130-157 (579)
79 cd02009 TPP_SHCHC_synthase Thi 74.9 4.8 0.0001 26.9 3.5 20 19-38 155-174 (175)
80 TIGR03297 Ppyr-DeCO2ase phosph 73.9 19 0.00041 27.3 6.7 48 6-60 307-354 (361)
81 PF02776 TPP_enzyme_N: Thiamin 73.2 4.7 0.0001 26.7 3.1 28 9-36 131-159 (172)
82 TIGR01504 glyox_carbo_lig glyo 72.0 9.7 0.00021 30.3 5.0 32 9-40 525-556 (588)
83 CHL00099 ilvB acetohydroxyacid 71.9 9 0.0002 30.4 4.8 21 19-39 535-555 (585)
84 PF13899 Thioredoxin_7: Thiore 71.7 4.4 9.6E-05 23.5 2.4 26 18-44 6-31 (82)
85 TIGR00118 acolac_lg acetolacta 71.5 8.8 0.00019 30.1 4.6 32 3-40 506-537 (558)
86 PRK08273 thiamine pyrophosphat 70.9 8.1 0.00017 30.8 4.3 29 9-37 134-162 (597)
87 cd03375 TPP_OGFOR Thiamine pyr 70.8 12 0.00025 25.6 4.6 28 7-38 156-183 (193)
88 smart00195 DSPc Dual specifici 70.2 6.8 0.00015 24.7 3.2 29 9-37 58-86 (138)
89 PLN02470 acetolactate synthase 70.0 7.8 0.00017 30.7 4.1 29 9-37 142-171 (585)
90 PRK07710 acetolactate synthase 69.8 11 0.00023 29.8 4.8 23 18-40 527-549 (571)
91 PRK07525 sulfoacetaldehyde ace 69.4 8.6 0.00019 30.5 4.2 29 9-37 134-162 (588)
92 PLN02573 pyruvate decarboxylas 68.4 9.5 0.0002 30.3 4.2 28 9-36 152-179 (578)
93 COG2609 AceE Pyruvate dehydrog 68.2 13 0.00028 31.3 4.9 35 7-44 362-399 (887)
94 cd03376 TPP_PFOR_porB_like Thi 67.6 16 0.00035 25.8 4.9 40 6-49 171-210 (235)
95 PRK08611 pyruvate oxidase; Pro 67.2 11 0.00024 29.9 4.4 28 9-36 134-161 (576)
96 PRK07586 hypothetical protein; 67.0 11 0.00024 29.2 4.4 29 9-37 130-159 (514)
97 PRK06457 pyruvate dehydrogenas 66.6 11 0.00025 29.5 4.4 31 7-37 128-158 (549)
98 PRK08199 thiamine pyrophosphat 66.6 14 0.0003 29.1 4.8 23 18-40 517-539 (557)
99 PRK08527 acetolactate synthase 66.5 10 0.00022 29.9 4.1 29 9-37 132-161 (563)
100 TIGR01504 glyox_carbo_lig glyo 66.3 10 0.00022 30.2 4.1 29 9-37 133-162 (588)
101 PRK06154 hypothetical protein; 66.3 13 0.00028 29.4 4.6 34 3-39 522-555 (565)
102 PRK05778 2-oxoglutarate ferred 66.1 29 0.00064 25.7 6.2 48 7-63 175-224 (301)
103 PRK07979 acetolactate synthase 65.9 10 0.00022 30.0 4.0 29 9-37 133-162 (574)
104 PRK06112 acetolactate synthase 64.4 15 0.00033 29.0 4.7 22 19-40 540-561 (578)
105 PRK11865 pyruvate ferredoxin o 64.4 17 0.00037 27.0 4.7 31 5-39 181-211 (299)
106 PRK11864 2-ketoisovalerate fer 64.2 20 0.00043 26.7 5.0 31 4-38 176-206 (300)
107 cd02018 TPP_PFOR Thiamine pyro 64.1 18 0.00039 25.6 4.6 27 9-38 176-202 (237)
108 PRK06725 acetolactate synthase 63.1 17 0.00038 28.8 4.8 33 2-40 514-546 (570)
109 PF11268 DUF3071: Protein of u 62.9 1.3 2.8E-05 30.4 -1.4 28 8-35 69-96 (170)
110 PRK07282 acetolactate synthase 62.7 12 0.00027 29.5 3.9 29 9-37 139-168 (566)
111 PRK08659 2-oxoglutarate ferred 62.7 19 0.00041 27.3 4.8 45 2-48 135-179 (376)
112 PRK07418 acetolactate synthase 62.4 13 0.00028 29.7 4.0 29 9-37 151-180 (616)
113 PRK08327 acetolactate synthase 61.9 14 0.0003 29.2 4.1 28 10-37 151-179 (569)
114 PRK06725 acetolactate synthase 61.8 12 0.00027 29.6 3.8 29 9-37 143-172 (570)
115 PRK09107 acetolactate synthase 61.8 12 0.00026 29.9 3.7 28 9-36 140-168 (595)
116 PRK06456 acetolactate synthase 61.7 14 0.0003 29.1 4.0 29 9-37 134-163 (572)
117 TIGR02720 pyruv_oxi_spxB pyruv 61.3 23 0.0005 28.1 5.2 28 9-38 504-531 (575)
118 PRK07524 hypothetical protein; 61.0 16 0.00036 28.5 4.3 30 8-37 132-162 (535)
119 PRK08978 acetolactate synthase 60.9 14 0.00031 28.9 4.0 29 9-37 129-158 (548)
120 COG0028 IlvB Thiamine pyrophos 60.9 15 0.00032 29.4 4.0 28 9-36 130-158 (550)
121 PRK08155 acetolactate synthase 60.8 15 0.00033 28.9 4.1 28 9-36 142-170 (564)
122 PRK11269 glyoxylate carboligas 60.8 15 0.00033 29.1 4.1 29 9-37 134-163 (591)
123 PRK12474 hypothetical protein; 60.5 17 0.00037 28.4 4.3 28 9-36 134-162 (518)
124 PRK06965 acetolactate synthase 59.9 17 0.00036 28.9 4.2 28 9-36 150-178 (587)
125 PRK07789 acetolactate synthase 59.7 17 0.00036 29.1 4.2 29 9-37 160-189 (612)
126 PRK08979 acetolactate synthase 59.3 16 0.00035 28.9 4.0 28 9-36 133-161 (572)
127 PF02211 NHase_beta: Nitrile h 59.1 11 0.00025 26.8 2.8 20 70-89 74-93 (222)
128 TIGR03846 sulfopy_beta sulfopy 58.8 17 0.00036 24.6 3.6 26 9-39 131-156 (181)
129 PRK09627 oorA 2-oxoglutarate-a 58.8 21 0.00046 27.1 4.4 45 2-48 134-178 (375)
130 PRK08199 thiamine pyrophosphat 58.6 18 0.00039 28.5 4.1 29 9-37 137-166 (557)
131 PRK07064 hypothetical protein; 58.6 19 0.00041 28.1 4.2 29 9-37 135-164 (544)
132 TIGR03457 sulphoacet_xsc sulfo 58.3 25 0.00055 27.8 5.0 31 9-40 528-558 (579)
133 TIGR03394 indol_phenyl_DC indo 58.3 18 0.0004 28.4 4.1 29 9-37 135-163 (535)
134 PRK06466 acetolactate synthase 58.1 18 0.0004 28.5 4.1 28 9-36 133-161 (574)
135 COG4573 GatZ Predicted tagatos 57.6 11 0.00025 28.9 2.7 25 17-41 29-53 (426)
136 TIGR02720 pyruv_oxi_spxB pyruv 57.5 21 0.00045 28.3 4.3 29 9-37 129-157 (575)
137 PRK08322 acetolactate synthase 57.3 18 0.00039 28.2 4.0 29 9-37 129-158 (547)
138 PRK06882 acetolactate synthase 57.2 19 0.0004 28.4 4.0 29 9-37 133-162 (574)
139 cd00127 DSPc Dual specificity 56.7 23 0.00051 21.9 3.8 28 10-37 62-89 (139)
140 PRK06154 hypothetical protein; 56.5 19 0.0004 28.6 3.9 29 9-37 145-174 (565)
141 PRK08617 acetolactate synthase 56.1 19 0.0004 28.3 3.9 29 9-37 133-162 (552)
142 TIGR03254 oxalate_oxc oxalyl-C 56.1 20 0.00043 28.2 4.0 29 9-37 133-162 (554)
143 PRK07418 acetolactate synthase 55.8 30 0.00065 27.7 5.0 27 10-40 534-560 (616)
144 PRK07710 acetolactate synthase 55.5 20 0.00044 28.3 4.0 30 8-37 143-173 (571)
145 PRK06112 acetolactate synthase 55.2 21 0.00046 28.2 4.1 29 9-37 140-169 (578)
146 TIGR02418 acolac_catab acetola 55.2 22 0.00048 27.8 4.1 29 9-37 127-156 (539)
147 PRK06546 pyruvate dehydrogenas 54.9 23 0.0005 28.1 4.2 29 9-37 132-160 (578)
148 PRK06276 acetolactate synthase 54.7 20 0.00044 28.4 3.9 29 9-37 129-158 (586)
149 CHL00099 ilvB acetohydroxyacid 54.7 21 0.00045 28.4 4.0 29 9-37 142-171 (585)
150 PRK09259 putative oxalyl-CoA d 54.5 24 0.00051 27.9 4.2 29 9-37 140-169 (569)
151 COG0028 IlvB Thiamine pyrophos 54.5 31 0.00067 27.6 4.9 34 2-41 500-533 (550)
152 PF02741 FTR_C: FTR, proximal 54.3 35 0.00076 23.0 4.4 32 3-34 100-131 (150)
153 PF08608 Wyosine_form: Wyosine 54.1 7.3 0.00016 22.3 1.0 17 30-46 3-19 (62)
154 PRK11869 2-oxoacid ferredoxin 54.0 27 0.00058 25.7 4.2 27 8-38 166-192 (280)
155 TIGR00118 acolac_lg acetolacta 53.7 23 0.00051 27.8 4.1 29 9-37 130-159 (558)
156 PRK09628 oorB 2-oxoglutarate-a 53.5 19 0.00041 26.3 3.3 26 9-38 175-200 (277)
157 PRK07092 benzoylformate decarb 53.1 25 0.00055 27.4 4.1 29 9-37 140-169 (530)
158 cd08323 CARD_APAF1 Caspase act 52.7 20 0.00044 21.7 2.9 22 69-90 16-37 (86)
159 PRK06048 acetolactate synthase 52.5 25 0.00054 27.7 4.0 29 9-37 136-165 (561)
160 PRK07979 acetolactate synthase 52.4 33 0.00073 27.1 4.8 31 9-40 519-549 (574)
161 PRK08266 hypothetical protein; 52.2 27 0.00059 27.3 4.2 29 9-37 137-166 (542)
162 PRK11866 2-oxoacid ferredoxin 52.1 40 0.00086 24.7 4.8 28 7-38 164-191 (279)
163 PF01855 POR_N: Pyruvate flavo 52.0 49 0.0011 23.4 5.1 46 2-48 118-163 (230)
164 PRK09124 pyruvate dehydrogenas 51.5 30 0.00066 27.3 4.4 28 9-36 132-159 (574)
165 PF02006 DUF137: Protein of un 49.3 76 0.0017 22.0 5.5 43 2-62 7-49 (178)
166 PRK07119 2-ketoisovalerate fer 48.2 47 0.001 25.0 4.8 45 2-48 135-179 (352)
167 cd08326 CARD_CASP9 Caspase act 48.1 27 0.00058 21.0 2.9 21 70-90 19-39 (84)
168 PF03681 UPF0150: Uncharacteri 47.3 30 0.00064 18.0 2.7 25 1-25 21-45 (48)
169 KOG0523|consensus 46.1 48 0.001 27.3 4.7 39 2-43 207-245 (632)
170 PRK08527 acetolactate synthase 46.0 31 0.00067 27.2 3.7 22 19-40 518-539 (563)
171 cd03377 TPP_PFOR_PNO Thiamine 45.9 29 0.00063 26.6 3.4 27 9-39 241-267 (365)
172 cd08327 CARD_RAIDD Caspase act 45.8 27 0.00058 21.5 2.7 21 70-90 24-44 (94)
173 TIGR03822 AblA_like_2 lysine-2 45.5 45 0.00099 24.6 4.3 38 3-40 201-238 (321)
174 TIGR03710 OAFO_sf 2-oxoacid:ac 45.3 50 0.0011 26.4 4.7 43 2-46 324-366 (562)
175 PF02417 Chromate_transp: Chro 44.8 28 0.0006 23.2 2.8 21 69-89 24-45 (169)
176 PRK07586 hypothetical protein; 44.7 31 0.00068 26.7 3.5 20 19-38 495-514 (514)
177 PF00725 3HCDH: 3-hydroxyacyl- 44.5 36 0.00077 20.1 3.1 23 68-90 10-32 (97)
178 PRK07064 hypothetical protein; 44.5 33 0.00071 26.8 3.6 26 10-39 503-528 (544)
179 PRK11867 2-oxoglutarate ferred 44.3 34 0.00073 25.1 3.4 26 9-38 176-201 (286)
180 PF06945 DUF1289: Protein of u 44.3 21 0.00046 19.4 1.9 17 53-70 21-37 (51)
181 PRK09107 acetolactate synthase 44.1 52 0.0011 26.3 4.7 28 9-40 528-555 (595)
182 smart00114 CARD Caspase recrui 43.9 23 0.00049 20.9 2.1 19 72-90 25-43 (88)
183 PF04122 CW_binding_2: Putativ 43.8 47 0.001 19.5 3.5 28 3-34 28-55 (92)
184 PF13350 Y_phosphatase3: Tyros 43.7 32 0.00069 22.5 3.0 23 15-37 110-132 (164)
185 PRK08611 pyruvate oxidase; Pro 43.6 35 0.00076 27.0 3.7 22 19-40 510-531 (576)
186 PF05186 Dpy-30: Dpy-30 motif; 43.6 37 0.0008 17.8 2.7 21 58-79 20-40 (42)
187 PF08013 Tagatose_6_P_K: Tagat 43.6 19 0.00042 28.1 2.1 23 16-38 28-50 (424)
188 PRK08978 acetolactate synthase 43.5 36 0.00077 26.7 3.7 22 19-40 505-526 (548)
189 cd08332 CARD_CASP2 Caspase act 43.4 36 0.00078 20.6 3.0 20 71-90 24-43 (90)
190 PRK08322 acetolactate synthase 43.2 37 0.0008 26.5 3.7 27 10-40 503-529 (547)
191 PRK08617 acetolactate synthase 43.1 37 0.0008 26.6 3.7 22 19-40 516-537 (552)
192 PRK05858 hypothetical protein; 42.6 37 0.00081 26.6 3.6 25 11-39 506-530 (542)
193 TIGR03393 indolpyr_decarb indo 42.1 38 0.00082 26.6 3.6 26 12-37 139-164 (539)
194 cd01204 IRS_PTB Insulin recept 42.0 22 0.00048 22.5 1.9 17 31-47 44-60 (104)
195 PRK15458 tagatose 6-phosphate 41.8 31 0.00067 27.1 3.0 22 17-38 29-50 (426)
196 PRK06456 acetolactate synthase 41.6 40 0.00086 26.6 3.7 22 19-40 525-546 (572)
197 PF04695 Pex14_N: Peroxisomal 41.6 24 0.00052 22.9 2.1 24 66-90 20-43 (136)
198 TIGR02418 acolac_catab acetola 41.4 41 0.00089 26.3 3.7 22 19-40 510-531 (539)
199 PRK08155 acetolactate synthase 41.2 40 0.00088 26.5 3.7 27 10-40 518-544 (564)
200 PF02979 NHase_alpha: Nitrile 41.0 26 0.00057 24.5 2.3 21 70-90 10-30 (188)
201 PF12345 DUF3641: Protein of u 41.0 16 0.00034 24.2 1.1 18 66-83 32-49 (134)
202 PHA02591 hypothetical protein; 40.9 46 0.001 20.2 3.1 25 66-91 45-69 (83)
203 PRK06882 acetolactate synthase 40.9 69 0.0015 25.3 4.9 28 10-40 520-547 (574)
204 PF00619 CARD: Caspase recruit 40.8 43 0.00093 19.2 3.0 22 69-90 18-39 (85)
205 TIGR03393 indolpyr_decarb indo 40.7 39 0.00085 26.5 3.5 25 10-38 502-526 (539)
206 PRK12858 tagatose 1,6-diphosph 40.7 97 0.0021 23.4 5.5 36 13-48 140-175 (340)
207 PF00782 DSPc: Dual specificit 40.6 19 0.00042 22.2 1.5 27 11-37 55-81 (133)
208 PRK07789 acetolactate synthase 40.1 72 0.0016 25.5 4.9 28 10-40 550-577 (612)
209 TIGR00173 menD 2-succinyl-5-en 39.7 46 0.001 25.3 3.7 25 13-37 139-164 (432)
210 PRK13761 hypothetical protein; 39.1 1.2E+02 0.0027 22.0 5.5 43 2-62 70-112 (248)
211 TIGR02810 agaZ_gatZ D-tagatose 39.0 36 0.00079 26.6 3.0 22 17-38 25-46 (420)
212 cd01671 CARD Caspase activatio 39.0 46 0.001 18.8 2.9 23 68-90 14-36 (80)
213 PRK08273 thiamine pyrophosphat 38.9 49 0.0011 26.4 3.8 23 19-41 526-548 (597)
214 cd08329 CARD_BIRC2_BIRC3 Caspa 38.4 46 0.001 20.3 2.9 22 69-90 25-46 (94)
215 PRK06457 pyruvate dehydrogenas 38.3 48 0.001 26.0 3.7 27 10-40 494-520 (549)
216 TIGR01521 FruBisAldo_II_B fruc 38.3 1.8E+02 0.0039 22.2 7.5 60 2-63 98-180 (347)
217 TIGR02177 PorB_KorB 2-oxoacid: 38.0 52 0.0011 24.2 3.6 26 9-38 160-185 (287)
218 PF08312 cwf21: cwf21 domain; 38.0 42 0.00092 18.0 2.4 20 69-89 13-32 (46)
219 PRK06048 acetolactate synthase 37.9 52 0.0011 25.9 3.8 22 19-40 518-539 (561)
220 cd08785 CARD_CARD9-like Caspas 37.7 49 0.0011 20.0 2.9 20 71-90 20-39 (86)
221 PRK15052 D-tagatose-1,6-bispho 37.6 39 0.00085 26.4 3.0 22 17-38 26-47 (421)
222 PF09693 Phage_XkdX: Phage unc 37.5 25 0.00055 18.1 1.4 15 77-91 22-36 (40)
223 PRK08610 fructose-bisphosphate 37.3 1.7E+02 0.0037 21.6 8.1 60 2-63 102-165 (286)
224 TIGR03254 oxalate_oxc oxalyl-C 37.3 52 0.0011 25.9 3.7 26 10-39 513-538 (554)
225 cd01681 aeEF2_snRNP_like_IV Th 37.2 64 0.0014 21.6 3.7 30 8-37 146-175 (177)
226 PRK12474 hypothetical protein; 37.1 48 0.001 25.8 3.5 20 19-38 499-518 (518)
227 PF03190 Thioredox_DsbH: Prote 36.7 38 0.00081 23.0 2.5 24 19-43 27-50 (163)
228 PRK09259 putative oxalyl-CoA d 36.6 53 0.0011 25.9 3.7 26 10-39 521-546 (569)
229 PRK05858 hypothetical protein; 36.6 59 0.0013 25.5 3.9 29 9-37 133-162 (542)
230 PLN02470 acetolactate synthase 36.5 53 0.0011 26.1 3.7 27 10-40 532-558 (585)
231 TIGR03336 IOR_alpha indolepyru 36.4 95 0.0021 24.9 5.1 41 4-46 129-169 (595)
232 PF10820 DUF2543: Protein of u 35.8 29 0.00063 20.7 1.6 24 65-89 28-51 (81)
233 PF01116 F_bP_aldolase: Fructo 35.3 1.8E+02 0.0039 21.3 8.3 59 2-62 98-163 (287)
234 cd02959 ERp19 Endoplasmic reti 35.0 54 0.0012 20.4 2.9 27 18-45 8-34 (117)
235 cd08325 CARD_CASP1-like Caspas 34.9 50 0.0011 19.6 2.6 25 66-90 15-39 (83)
236 cd02958 UAS UAS family; UAS is 34.8 52 0.0011 20.0 2.8 20 18-37 6-25 (114)
237 PF04282 DUF438: Family of unk 34.5 60 0.0013 19.1 2.8 23 66-89 29-53 (71)
238 PRK06276 acetolactate synthase 34.5 60 0.0013 25.8 3.7 27 9-39 517-543 (586)
239 PRK09124 pyruvate dehydrogenas 34.4 60 0.0013 25.6 3.7 27 10-40 505-531 (574)
240 PRK07449 2-succinyl-5-enolpyru 34.4 55 0.0012 25.7 3.4 20 19-38 529-548 (568)
241 cd02955 SSP411 TRX domain, SSP 34.4 47 0.001 21.2 2.6 19 19-37 5-23 (124)
242 PF10529 Hist_rich_Ca-bd: Hist 34.2 23 0.00051 14.7 0.8 11 39-49 1-11 (15)
243 COG4231 Indolepyruvate ferredo 34.2 93 0.002 25.8 4.7 40 6-47 143-182 (640)
244 PRK11234 nfrB bacteriophage N4 34.0 27 0.00058 29.0 1.7 21 71-91 681-701 (727)
245 COG2059 ChrA Chromate transpor 33.9 41 0.00088 23.5 2.4 22 69-90 29-51 (195)
246 PF00448 SRP54: SRP54-type pro 33.9 20 0.00043 24.6 0.8 31 14-44 15-45 (196)
247 TIGR01244 conserved hypothetic 33.2 57 0.0012 20.9 2.9 19 16-37 76-94 (135)
248 PRK06965 acetolactate synthase 33.1 1.2E+02 0.0026 24.1 5.1 27 10-39 536-562 (587)
249 cd08330 CARD_ASC_NALP1 Caspase 32.6 69 0.0015 18.9 3.0 22 69-90 17-38 (82)
250 PRK08185 hypothetical protein; 32.3 2.1E+02 0.0045 21.1 7.8 60 2-63 93-158 (283)
251 TIGR03119 one_C_fhcD formylmet 31.8 1.2E+02 0.0025 22.6 4.5 28 3-30 237-264 (287)
252 cd00755 YgdL_like Family of ac 31.4 1.3E+02 0.0027 21.3 4.6 66 4-82 105-172 (231)
253 PRK02114 formylmethanofuran--t 31.2 1.2E+02 0.0026 22.7 4.5 32 3-36 245-276 (297)
254 PLN02573 pyruvate decarboxylas 31.1 1.1E+02 0.0024 24.3 4.7 26 11-38 526-551 (578)
255 COG3218 ABC-type uncharacteriz 31.0 59 0.0013 23.1 2.8 25 3-27 170-194 (205)
256 PRK07998 gatY putative fructos 30.9 2.2E+02 0.0048 21.0 7.8 60 2-63 99-162 (283)
257 cd08810 CARD_BCL10 Caspase act 30.6 77 0.0017 19.2 2.9 20 71-90 20-39 (84)
258 cd07049 BMC_EutL_repeat1 ethan 30.5 94 0.002 19.7 3.4 23 6-28 78-100 (103)
259 PRK04161 tagatose 1,6-diphosph 30.5 77 0.0017 24.1 3.5 26 17-42 145-170 (329)
260 PRK08366 vorA 2-ketoisovalerat 30.4 1.5E+02 0.0032 22.8 5.1 41 6-47 134-174 (390)
261 PF04746 DUF575: Protein of un 30.4 62 0.0013 20.3 2.5 30 59-89 60-90 (101)
262 PRK12399 tagatose 1,6-diphosph 30.3 84 0.0018 23.8 3.6 27 17-43 143-169 (324)
263 cd01683 EF2_IV_snRNP EF-2_doma 30.2 97 0.0021 21.0 3.7 29 9-37 147-175 (178)
264 COG0541 Ffh Signal recognition 30.0 52 0.0011 26.0 2.6 28 15-42 115-142 (451)
265 PF05965 FYRC: F/Y rich C-term 29.8 72 0.0016 18.7 2.7 29 2-30 14-42 (86)
266 PRK03124 S-adenosylmethionine 29.8 1.5E+02 0.0032 19.2 4.3 32 9-44 21-52 (127)
267 PRK02487 hypothetical protein; 29.7 1.6E+02 0.0035 19.5 4.7 37 6-45 20-56 (163)
268 PF00990 GGDEF: GGDEF domain; 29.7 79 0.0017 19.2 3.0 24 7-30 136-159 (161)
269 PF11630 DUF3254: Protein of u 29.6 63 0.0014 20.4 2.5 24 66-89 74-97 (100)
270 PF04599 Pox_G5: Poxvirus G5 p 29.5 1.2E+02 0.0026 23.9 4.4 32 2-34 160-191 (425)
271 PF09364 XFP_N: XFP N-terminal 29.3 77 0.0017 24.5 3.3 21 3-23 229-249 (379)
272 KOG0426|consensus 29.1 65 0.0014 21.5 2.6 29 44-78 94-122 (165)
273 TIGR01232 lacD tagatose 1,6-di 29.1 84 0.0018 23.8 3.5 28 16-43 143-170 (325)
274 PRK12857 fructose-1,6-bisphosp 29.0 2.4E+02 0.0051 20.8 7.6 60 2-63 99-164 (284)
275 PF09954 DUF2188: Uncharacteri 28.8 86 0.0019 17.2 2.8 20 16-35 30-50 (62)
276 PRK06466 acetolactate synthase 28.8 84 0.0018 24.9 3.6 27 10-40 522-549 (574)
277 PF07615 Ykof: YKOF-related Fa 28.7 1.3E+02 0.0028 17.7 4.5 30 10-39 46-75 (81)
278 PRK15005 universal stress prot 28.6 1.1E+02 0.0025 18.7 3.7 30 5-34 8-37 (144)
279 cd02414 jag_KH jag_K homology 28.4 91 0.002 17.9 3.0 34 8-41 43-76 (77)
280 TIGR03297 Ppyr-DeCO2ase phosph 28.4 1.2E+02 0.0025 23.0 4.2 35 1-36 116-150 (361)
281 PRK09622 porA pyruvate flavodo 28.3 1.5E+02 0.0034 22.7 4.9 42 3-45 138-181 (407)
282 PF09830 ATP_transf: ATP adeny 28.0 87 0.0019 17.6 2.7 20 53-73 38-57 (62)
283 PF04273 DUF442: Putative phos 28.0 91 0.002 19.5 3.1 24 12-38 72-95 (110)
284 PF09012 FeoC: FeoC like trans 27.8 39 0.00086 19.0 1.3 21 70-90 3-23 (69)
285 COG1030 NfeD Membrane-bound se 27.8 1.2E+02 0.0026 23.9 4.2 37 3-39 30-67 (436)
286 PF15601 Imm42: Immunity prote 27.2 80 0.0017 20.8 2.8 28 4-34 106-133 (134)
287 PRK10486 autoinducer-2 (AI-2) 27.0 1.5E+02 0.0032 17.7 6.6 67 4-77 8-79 (96)
288 KOG3375|consensus 27.0 57 0.0012 22.2 2.1 21 40-62 5-25 (174)
289 KOG2244|consensus 26.7 35 0.00076 28.1 1.2 29 8-36 91-119 (786)
290 PF04844 Ovate: Transcriptiona 26.7 1.1E+02 0.0024 17.3 2.9 24 66-89 2-29 (59)
291 cd02960 AGR Anterior Gradient 26.7 1E+02 0.0022 20.1 3.2 27 17-44 11-37 (130)
292 PF01904 DUF72: Protein of unk 26.1 45 0.00097 23.4 1.5 26 36-63 167-194 (230)
293 COG1303 Uncharacterized protei 25.7 1.8E+02 0.0039 20.1 4.3 33 3-38 34-66 (179)
294 PHA00649 hypothetical protein 25.4 94 0.002 18.5 2.6 23 4-27 26-48 (83)
295 smart00542 FYRC "FY-rich" doma 25.2 1.1E+02 0.0025 18.1 3.0 29 2-30 10-38 (86)
296 COG1628 Endonuclease V homolog 25.0 94 0.002 21.7 2.9 43 3-49 46-88 (185)
297 COG2037 Ftr Formylmethanofuran 24.9 1.6E+02 0.0036 21.7 4.2 34 1-34 244-277 (297)
298 KOG2672|consensus 24.8 74 0.0016 24.1 2.5 58 18-77 177-244 (360)
299 PF09670 Cas_Cas02710: CRISPR- 24.7 1.6E+02 0.0034 22.4 4.3 34 3-36 43-77 (379)
300 KOG2733|consensus 24.6 97 0.0021 24.2 3.2 34 3-45 66-100 (423)
301 PRK10867 signal recognition pa 24.6 75 0.0016 24.8 2.6 30 15-44 115-145 (433)
302 COG1027 AspA Aspartate ammonia 24.5 69 0.0015 25.3 2.3 21 71-91 435-455 (471)
303 PRK06806 fructose-bisphosphate 24.4 2.9E+02 0.0062 20.2 7.4 60 2-63 99-162 (281)
304 PLN02980 2-oxoglutarate decarb 24.3 90 0.0019 28.4 3.3 22 19-40 869-890 (1655)
305 PF03992 ABM: Antibiotic biosy 24.2 1.3E+02 0.0028 16.2 6.4 55 4-64 8-68 (78)
306 PTZ00242 protein tyrosine phos 23.9 97 0.0021 20.6 2.8 22 16-37 85-106 (166)
307 COG3360 Uncharacterized conser 23.5 1.7E+02 0.0037 17.2 3.5 42 4-46 9-50 (71)
308 PHA03065 Hypothetical protein; 23.2 1.8E+02 0.0039 23.0 4.4 32 2-34 162-193 (438)
309 TIGR01669 phage_XkdX phage unc 23.1 70 0.0015 17.0 1.6 15 77-91 27-41 (45)
310 COG2225 AceB Malate synthase [ 23.1 4.1E+02 0.009 21.7 6.5 57 2-76 186-247 (545)
311 PF08920 SF3b1: Splicing facto 23.0 96 0.0021 20.7 2.6 20 72-91 76-96 (144)
312 PRK08979 acetolactate synthase 22.9 1.2E+02 0.0027 23.9 3.6 22 19-40 525-547 (572)
313 cd00947 TBP_aldolase_IIB Tagat 22.8 3.1E+02 0.0068 20.1 7.8 60 2-63 94-157 (276)
314 KOG0190|consensus 22.7 1.3E+02 0.0029 24.1 3.7 34 24-62 379-412 (493)
315 PRK10302 hypothetical protein; 22.6 1.2E+02 0.0025 22.2 3.1 31 28-63 183-217 (272)
316 PRK07084 fructose-bisphosphate 22.4 3.5E+02 0.0075 20.4 7.8 60 2-63 110-173 (321)
317 COG5499 Predicted transcriptio 22.1 1.3E+02 0.0028 19.5 2.9 25 65-90 58-82 (120)
318 PF08921 DUF1904: Domain of un 21.9 2E+02 0.0043 18.1 3.8 37 1-37 1-41 (108)
319 PF12368 DUF3650: Protein of u 21.7 60 0.0013 15.8 1.0 14 77-90 11-24 (28)
320 PRK12361 hypothetical protein; 21.6 1.2E+02 0.0026 23.9 3.3 26 16-45 162-187 (547)
321 PRK09196 fructose-1,6-bisphosp 21.2 3.8E+02 0.0082 20.4 7.6 60 2-63 100-182 (347)
322 PF06985 HET: Heterokaryon inc 21.2 1.4E+02 0.003 18.1 3.0 33 3-37 16-48 (139)
323 PRK13662 hypothetical protein; 20.8 1.3E+02 0.0027 20.8 2.9 20 13-32 140-159 (177)
324 PRK15025 ureidoglycolate dehyd 20.7 3.1E+02 0.0068 20.8 5.2 41 3-47 76-119 (349)
325 PF09893 DUF2120: Uncharacteri 20.7 70 0.0015 21.5 1.6 13 26-38 133-145 (146)
326 COG4077 Uncharacterized protei 20.7 86 0.0019 21.0 2.0 14 26-39 139-152 (156)
327 PF05209 MinC_N: Septum format 20.5 2.1E+02 0.0045 17.2 4.1 38 2-39 16-55 (99)
328 TIGR00064 ftsY signal recognit 20.5 85 0.0018 22.6 2.1 29 14-42 86-114 (272)
329 PRK11032 hypothetical protein; 20.4 1.5E+02 0.0033 20.0 3.2 21 69-89 30-50 (160)
330 cd08809 CARD_CARD9 Caspase act 20.2 67 0.0015 19.7 1.3 20 71-90 20-39 (86)
331 PRK07709 fructose-bisphosphate 20.2 3.6E+02 0.0079 19.8 8.1 60 2-63 102-165 (285)
332 PRK08367 porA pyruvate ferredo 20.2 3.5E+02 0.0077 20.7 5.5 43 4-47 133-177 (394)
333 COG2089 SpsE Sialic acid synth 20.2 1.3E+02 0.0028 23.1 3.0 23 16-38 160-184 (347)
No 1
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=3.1e-35 Score=218.22 Aligned_cols=89 Identities=44% Similarity=0.750 Sum_probs=86.0
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
||+++|||||+++||+++++|++++|+|+||+|||+.|||++|||++|++..|||++|+++|+ ++|||.+|+++|++.|
T Consensus 223 ipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~-~~DPi~r~~~~L~~~g 301 (358)
T COG1071 223 IPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAG 301 (358)
T ss_pred CCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHh-ccChHHHHHHHHHHcC
Confidence 799999999999999999999999999999999999999999999999977899999999998 5999999999999999
Q ss_pred CCCHHHHhhh
Q psy11439 81 LVTPEELKRE 90 (91)
Q Consensus 81 ~~~~~e~~~~ 90 (91)
++|+++++++
T Consensus 302 ~~see~~~~i 311 (358)
T COG1071 302 ILSEEELEAI 311 (358)
T ss_pred CCCHHHHHHH
Confidence 9999998875
No 2
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=99.98 E-value=1.6e-32 Score=200.11 Aligned_cols=90 Identities=42% Similarity=0.627 Sum_probs=78.8
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
||+++||||||++|+.++++|++++|+|+||+|||+.|||++|||++|++..||+++|++.|++.+|||.+|+++|+++|
T Consensus 187 ip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~yr~~~e~~~~~~~~DPi~~~~~~L~~~g 266 (300)
T PF00676_consen 187 IPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFYRSPEEYEEWWKKRDPIKRFRRYLIEEG 266 (300)
T ss_dssp SEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGTSHHHHHHHHHHCT-HHHHHHHHHHHTT
T ss_pred CcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCccccCCHHHHHHHHhcCcHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999988889999999888767899999999999999
Q ss_pred CCCHHHHhhh
Q psy11439 81 LVTPEELKRE 90 (91)
Q Consensus 81 ~~~~~e~~~~ 90 (91)
++|+++++++
T Consensus 267 ~~t~~~~~~i 276 (300)
T PF00676_consen 267 VLTEEELDAI 276 (300)
T ss_dssp SS-HHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9999998875
No 3
>KOG0225|consensus
Probab=99.97 E-value=6.6e-31 Score=193.02 Aligned_cols=90 Identities=62% Similarity=0.953 Sum_probs=87.6
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
||++.|||||+++|.+|++.|++++++|+||+++|+.||||+|||+||+.+.||+.+|++..+.++|||..++++|++.+
T Consensus 249 iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~ 328 (394)
T KOG0225|consen 249 IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELG 328 (394)
T ss_pred CCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhc
Confidence 79999999999999999999999999999999999999999999999998889999999999888999999999999999
Q ss_pred CCCHHHHhhh
Q psy11439 81 LVTPEELKRE 90 (91)
Q Consensus 81 ~~~~~e~~~~ 90 (91)
+.|++||+++
T Consensus 329 late~ELKai 338 (394)
T KOG0225|consen 329 LATEEELKAI 338 (394)
T ss_pred ccCHHHHHHH
Confidence 9999999875
No 4
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=99.97 E-value=6.9e-30 Score=190.44 Aligned_cols=89 Identities=56% Similarity=0.904 Sum_probs=84.5
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
||+++|||+|+++|+.+++.|++++|+ +||+|||+.|||++|||++|++..||+++|++.|++++|||.+|+++|+++|
T Consensus 222 ~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g 300 (362)
T PLN02269 222 VPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHE 300 (362)
T ss_pred CCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcCCCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcC
Confidence 689999999999999999999999999 9999999999999999999987669999999999756999999999999999
Q ss_pred CCCHHHHhhh
Q psy11439 81 LVTPEELKRE 90 (91)
Q Consensus 81 ~~~~~e~~~~ 90 (91)
++|+++++++
T Consensus 301 ~~te~e~~~i 310 (362)
T PLN02269 301 LATEAELKDI 310 (362)
T ss_pred CCCHHHHHHH
Confidence 9999998864
No 5
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.96 E-value=2.8e-28 Score=180.54 Aligned_cols=88 Identities=44% Similarity=0.749 Sum_probs=84.5
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
+|+++|||+|+++|+.+++.|++++|+++||+|||+.|||++|||++|++. ||+++|++.|+ ++|||.+|+++|+++|
T Consensus 221 ~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIev~tyR~~gHs~~D~~~-YR~~~e~~~~~-~~DPi~~~~~~L~~~g 298 (341)
T CHL00149 221 LPGIEVDGMDVLAVREVAKEAVERARQGDGPTLIEALTYRFRGHSLADPDE-LRSKQEKEAWV-ARDPIKKLKSYIIDNE 298 (341)
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEEecCCCcCCCCCcc-CCCHHHHHHHh-cCCHHHHHHHHHHHcC
Confidence 689999999999999999999999999999999999999999999999986 99999999998 6999999999999999
Q ss_pred CCCHHHHhhh
Q psy11439 81 LVTPEELKRE 90 (91)
Q Consensus 81 ~~~~~e~~~~ 90 (91)
++|+++++++
T Consensus 299 ~~~~~~~~~i 308 (341)
T CHL00149 299 LASQKELNKI 308 (341)
T ss_pred CCCHHHHHHH
Confidence 9999998864
No 6
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.95 E-value=5.6e-28 Score=177.09 Aligned_cols=88 Identities=55% Similarity=0.911 Sum_probs=84.5
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
+|+++|||+|+++|+.+++.|++++|+++||+|||+.|||++|||++|++. ||+++|++.|+ ++|||.+|+++|+++|
T Consensus 196 ~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~~-Yr~~~e~~~~~-~~dPi~~~~~~L~~~g 273 (315)
T TIGR03182 196 IPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHSMSDPAK-YRSKEEVEEWR-KRDPIEKLKARLIEQG 273 (315)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCCCCCccc-cCCHHHHHHHH-hcCHHHHHHHHHHHCC
Confidence 689999999999999999999999999999999999999999999999986 99999999998 6999999999999999
Q ss_pred CCCHHHHhhh
Q psy11439 81 LVTPEELKRE 90 (91)
Q Consensus 81 ~~~~~e~~~~ 90 (91)
++|+++++++
T Consensus 274 ~~~~~~~~~~ 283 (315)
T TIGR03182 274 IASEEELKEI 283 (315)
T ss_pred CCCHHHHHHH
Confidence 9999998864
No 7
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=99.95 E-value=6.7e-28 Score=195.26 Aligned_cols=89 Identities=21% Similarity=0.269 Sum_probs=85.5
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
||+++|||+||++|+.|++.|++++|+|+||+|||+.|||++|||++|++. ||+++|++.|++.+||+.+|+++|+++|
T Consensus 410 iP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~-yr~p~ey~~~~~~~dpi~~~~~~Li~~G 488 (924)
T PRK09404 410 APIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPS-FTQPLMYKKIKKHPTTRELYADKLVAEG 488 (924)
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCc-CCCHHHHHHHHhcCCHHHHHHHHHHHcC
Confidence 799999999999999999999999999999999999999999999999997 9999999999866899999999999999
Q ss_pred CCCHHHHhhh
Q psy11439 81 LVTPEELKRE 90 (91)
Q Consensus 81 ~~~~~e~~~~ 90 (91)
++|+++++++
T Consensus 489 ~lt~~e~~~i 498 (924)
T PRK09404 489 VITEEEADEM 498 (924)
T ss_pred CCCHHHHHHH
Confidence 9999998864
No 8
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.95 E-value=1.6e-27 Score=181.10 Aligned_cols=88 Identities=43% Similarity=0.705 Sum_probs=84.4
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
||+++|||+|+++|+.+++.|++++|+++||+|||+.|||++|||++|++. ||+++|++.|+ ++|||.+|+++|+++|
T Consensus 287 ~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~LIe~~tyR~~GHs~~D~~~-YR~~~e~~~~~-~~DPi~~~~~~L~~~g 364 (433)
T PLN02374 287 MPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDE-LRDPAEKAHYA-ARDPIAALKKYLIENG 364 (433)
T ss_pred CcEEEECCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEecCCcCCCCccc-cCCHHHHHHHH-cCCcHHHHHHHHHHcC
Confidence 689999999999999999999999999999999999999999999999886 99999999998 6999999999999999
Q ss_pred CCCHHHHhhh
Q psy11439 81 LVTPEELKRE 90 (91)
Q Consensus 81 ~~~~~e~~~~ 90 (91)
++|+++++++
T Consensus 365 i~te~e~~~i 374 (433)
T PLN02374 365 LATEAELKAI 374 (433)
T ss_pred CCCHHHHHHH
Confidence 9999998864
No 9
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.95 E-value=3.5e-27 Score=171.04 Aligned_cols=89 Identities=45% Similarity=0.707 Sum_probs=84.9
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
+|+++|||+|+++|+.+++.|++++|++++|+|||+.|||+.|||++|++..||+++|++.|+ ++|||.+|+++|+++|
T Consensus 190 ~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~~Yr~~~e~~~~~-~~dpi~~~~~~L~~~g 268 (293)
T cd02000 190 IPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPSRYRTKEEVEEWK-KRDPILRLRKYLIEAG 268 (293)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcccCCCHHHHHHHh-cCCHHHHHHHHHHHCC
Confidence 588999999999999999999999999999999999999999999888888899999999998 6999999999999999
Q ss_pred CCCHHHHhhh
Q psy11439 81 LVTPEELKRE 90 (91)
Q Consensus 81 ~~~~~e~~~~ 90 (91)
++|+++++++
T Consensus 269 ~~~~~~~~~~ 278 (293)
T cd02000 269 ILTEEELAAI 278 (293)
T ss_pred CCCHHHHHHH
Confidence 9999999874
No 10
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.94 E-value=1.2e-26 Score=171.72 Aligned_cols=89 Identities=37% Similarity=0.552 Sum_probs=85.2
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
+|+++|||+|+++|+.+++.|++++|+++||+|||+.|||+.|||++|++..||+++|++.|+ ++|||.+|+++|+++|
T Consensus 208 ~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~-~~Dpi~~~~~~L~~~g 286 (341)
T TIGR03181 208 IPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWR-KKDPILRLRKYLERKG 286 (341)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeecCCCCCCCCCCccCCCHHHHHHHh-cCCHHHHHHHHHHHCC
Confidence 689999999999999999999999999999999999999999999999887799999999998 5999999999999999
Q ss_pred CCCHHHHhhh
Q psy11439 81 LVTPEELKRE 90 (91)
Q Consensus 81 ~~~~~e~~~~ 90 (91)
++|+++++++
T Consensus 287 ~~~~~e~~~i 296 (341)
T TIGR03181 287 LWDEEQEEAL 296 (341)
T ss_pred CCCHHHHHHH
Confidence 9999998864
No 11
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=99.94 E-value=6.4e-27 Score=189.39 Aligned_cols=89 Identities=22% Similarity=0.284 Sum_probs=83.8
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
||+++||||||++|+.+++.|++++|+|+||+|||+.|||++|||++|++..||+ ++++.|++.+||+.+|+++|+++|
T Consensus 411 iP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~~~~~i~~~~dPi~~~~~~Li~~G 489 (929)
T TIGR00239 411 APIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-LMYQKIKKHPTPRKVYADKLVSEG 489 (929)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-HHHHHHHhCCCHHHHHHHHHHHcC
Confidence 7999999999999999999999999999999999999999999999999987887 788888766899999999999999
Q ss_pred CCCHHHHhhh
Q psy11439 81 LVTPEELKRE 90 (91)
Q Consensus 81 ~~~~~e~~~~ 90 (91)
++|+++++++
T Consensus 490 v~te~e~~~i 499 (929)
T TIGR00239 490 VATEEDVTEM 499 (929)
T ss_pred CCCHHHHHHH
Confidence 9999998864
No 12
>KOG1182|consensus
Probab=99.93 E-value=2.3e-26 Score=168.78 Aligned_cols=87 Identities=37% Similarity=0.519 Sum_probs=83.4
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
|.+++|||||+++||.|+++|.+.+-...+|+|||+.|||.++||+|||.+.||+.+|++.|..++.||.+|++|+..+|
T Consensus 280 i~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~G 359 (432)
T KOG1182|consen 280 IRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNG 359 (432)
T ss_pred eEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHHhcC
Confidence 46899999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred CCCHHHH
Q psy11439 81 LVTPEEL 87 (91)
Q Consensus 81 ~~~~~e~ 87 (91)
||+++.-
T Consensus 360 Ww~ee~E 366 (432)
T KOG1182|consen 360 WWSEEDE 366 (432)
T ss_pred CcChhhH
Confidence 9998753
No 13
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.84 E-value=1.8e-20 Score=152.04 Aligned_cols=89 Identities=19% Similarity=0.201 Sum_probs=82.2
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
+|+++|||+||++|+.+++.|+++++++++|++|++.|||++||+++|+++ +..+..++.....+..-+.|.+.|+.+|
T Consensus 715 ~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPS-mtqP~mY~~i~~~~svrk~yte~Ligrg 793 (1228)
T PRK12270 715 APIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPS-MTQPLMYDLIDAKRSVRKLYTEALIGRG 793 (1228)
T ss_pred CCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcc-cCCchhhhhhhhcchHHHHHHHHHhhcC
Confidence 699999999999999999999999999999999999999999999999997 8888888877655556778999999999
Q ss_pred CCCHHHHhhh
Q psy11439 81 LVTPEELKRE 90 (91)
Q Consensus 81 ~~~~~e~~~~ 90 (91)
.+|++|+++.
T Consensus 794 dit~ee~e~~ 803 (1228)
T PRK12270 794 DITVEEAEQA 803 (1228)
T ss_pred CCCHHHHHHH
Confidence 9999999875
No 14
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.83 E-value=1.3e-20 Score=135.88 Aligned_cols=56 Identities=25% Similarity=0.284 Sum_probs=53.5
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHH
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRD 57 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~ 57 (91)
||+++|||+||++|+.+++.|++++|+++||+|||++|||++|||++|++. |++|.
T Consensus 208 ip~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~~GHse~D~p~-~t~p~ 263 (265)
T cd02016 208 APIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNELDEPS-FTQPL 263 (265)
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCcCCcc-ccCCC
Confidence 699999999999999999999999999999999999999999999999987 88764
No 15
>KOG0450|consensus
Probab=99.58 E-value=1.7e-14 Score=114.59 Aligned_cols=90 Identities=18% Similarity=0.285 Sum_probs=85.7
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
.|.++||++||++|..+.+-|.++...++..++|+++|||.+||++.|.+. |..|-.++.+++.+..+..|.+.|+++|
T Consensus 469 aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~-FTQPlMYk~I~k~~~~l~~Y~ekLl~eg 547 (1017)
T KOG0450|consen 469 APIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPM-FTQPLMYKQIRKHKPVLQKYAEKLLSEG 547 (1017)
T ss_pred CCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCcc-ccchHHHHHHHcCCcHHHHHHHHHHhcC
Confidence 389999999999999999999999999999999999999999999999987 9999999999988899999999999999
Q ss_pred CCCHHHHhhhC
Q psy11439 81 LVTPEELKREL 91 (91)
Q Consensus 81 ~~~~~e~~~~~ 91 (91)
.+|++++++++
T Consensus 548 tvs~~evd~~~ 558 (1017)
T KOG0450|consen 548 TVSQQEVDEEI 558 (1017)
T ss_pred cccHHHHHHHH
Confidence 99999999863
No 16
>KOG0451|consensus
Probab=99.54 E-value=1.2e-14 Score=113.56 Aligned_cols=87 Identities=22% Similarity=0.317 Sum_probs=81.0
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHH-HHHHHHHcC
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISS-LKDKILNAS 80 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~-~~~~L~~~g 80 (91)
|.++|||.||++|..|++.|.++-|++++.+||.+.|||..||++.|++. |.++-.++..+ +|..++. |.++|+++|
T Consensus 388 pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~-ftspvmyk~v~-aReSvPdlya~~L~~eg 465 (913)
T KOG0451|consen 388 PVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPT-FTSPVMYKEVE-ARESVPDLYAQQLAKEG 465 (913)
T ss_pred CEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCcc-ccChhHHHHHH-hhhcccHHHHHHHHhcc
Confidence 78999999999999999999999999999999999999999999999998 99999999887 4777765 889999999
Q ss_pred CCCHHHHhhh
Q psy11439 81 LVTPEELKRE 90 (91)
Q Consensus 81 ~~~~~e~~~~ 90 (91)
++|++++++.
T Consensus 466 ~~tee~vkE~ 475 (913)
T KOG0451|consen 466 VLTEEKVKEM 475 (913)
T ss_pred cccHHHHHHH
Confidence 9999998764
No 17
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.52 E-value=3.8e-14 Score=114.63 Aligned_cols=89 Identities=19% Similarity=0.193 Sum_probs=84.4
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
.|+++|||.||++|..+++.|+++...++.|++|.+.|||..||+++|.+. +..+..++..++++-+...|.+.|+++|
T Consensus 393 aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs-~TqP~mY~~I~~h~t~r~~ya~~Lv~~g 471 (906)
T COG0567 393 APIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPS-VTQPLMYQKIKKHPTVRKLYADKLIAEG 471 (906)
T ss_pred CceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCcccccc-ccCHHHHHHHhcCCChhhhHHHHHHhhc
Confidence 489999999999999999999999999999999999999999999999997 9999999999888899999999999999
Q ss_pred CCCHHHHhhh
Q psy11439 81 LVTPEELKRE 90 (91)
Q Consensus 81 ~~~~~e~~~~ 90 (91)
++|+++++..
T Consensus 472 vis~~~~~~~ 481 (906)
T COG0567 472 VISEEEADEL 481 (906)
T ss_pred cccHHHHHHH
Confidence 9999988753
No 18
>PTZ00089 transketolase; Provisional
Probab=98.23 E-value=5.8e-06 Score=66.27 Aligned_cols=60 Identities=23% Similarity=0.204 Sum_probs=48.2
Q ss_pred ceEEe-eCC-CHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCC---CCCCHHHHHHHHh
Q psy11439 2 ENKEV-DGM-DILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGT---SYRTRDEIQEVRQ 64 (91)
Q Consensus 2 ~~~~v-DG~-D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~---~Yr~~~e~~~~~~ 64 (91)
.++.| ||+ |+.+++.|+++|.+.. ++|++|++.|+|-.||+..+... .+.+++|++.+++
T Consensus 213 ~~i~v~dG~~D~~~l~~a~~~a~~~~---~~P~~I~~~T~kG~G~~~e~~~~~H~~~~~~~~~~~~~~ 277 (661)
T PTZ00089 213 HVIEVDNGNTDFDGLRKAIEEAKKSK---GKPKLIIVKTTIGYGSSKAGTEKVHGAPLGDEDIAQVKE 277 (661)
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHhcC---CCcEEEEEEeeecCCCCcCCCCCccCCCCCHHHHHHHHH
Confidence 56788 999 9999999999887532 78999999999999987766543 3667788777653
No 19
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=98.09 E-value=6.1e-06 Score=65.25 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=35.7
Q ss_pred CceEEe-eCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCC
Q psy11439 1 MENKEV-DGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHS 45 (91)
Q Consensus 1 i~~~~v-DG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs 45 (91)
++++.| ||+|+.++++++++| |+++||++|+++|||-.|..
T Consensus 208 ~~~~~v~DG~D~~~l~~a~~~a----~~~~gP~~i~~~T~kG~G~~ 249 (581)
T PRK12315 208 LDYRYVEDGNDIESLIEAFKEV----KDIDHPIVLHIHTLKGKGYQ 249 (581)
T ss_pred CeEEEeeCCCCHHHHHHHHHHH----HhCCCCEEEEEEeecCCCCC
Confidence 467788 999999999999885 56889999999999999854
No 20
>PRK05899 transketolase; Reviewed
Probab=97.96 E-value=3.8e-05 Score=61.01 Aligned_cols=58 Identities=24% Similarity=0.247 Sum_probs=45.8
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCC----HHHHHHHH
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRT----RDEIQEVR 63 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~----~~e~~~~~ 63 (91)
+++.|||+|+.++..++++|.+ .++|++|++.|+|-.||+..++...|.. +++++.+.
T Consensus 215 ~~~~VdG~d~~~l~~al~~a~~----~~~P~vI~v~t~kg~g~~~~e~~~~~H~~~~~~~~~~~~~ 276 (624)
T PRK05899 215 HVIEVDGHDVEAIDAAIEEAKA----STKPTLIIAKTIIGKGAPNKEGTHKVHGAPLGAEEIAAAK 276 (624)
T ss_pred eEEEECCCCHHHHHHHHHHHHh----cCCCEEEEEEeEeccCCccccCCCcccCCCCCHHHHHHHH
Confidence 5788999999999999988764 3689999999999999986554434553 56776654
No 21
>PRK12754 transketolase; Reviewed
Probab=97.74 E-value=0.00016 Score=58.22 Aligned_cols=41 Identities=24% Similarity=0.202 Sum_probs=34.9
Q ss_pred ceEE-eeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCC
Q psy11439 2 ENKE-VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHS 45 (91)
Q Consensus 2 ~~~~-vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs 45 (91)
++++ |||+|+.++++|+.+|.. .+++|++|+|.|++-.|.+
T Consensus 211 ~vi~vvDG~D~~ai~~A~~~a~~---~~~~Pt~I~~~T~~g~G~~ 252 (663)
T PRK12754 211 HVIRGIDGHDADSIKRAVEEARA---VTDKPSLLMCKTIIGFGSP 252 (663)
T ss_pred eEEeeECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCcc
Confidence 5677 899999999988877653 2588999999999999976
No 22
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=97.67 E-value=9.6e-05 Score=59.28 Aligned_cols=41 Identities=34% Similarity=0.385 Sum_probs=34.1
Q ss_pred CceEEe-eCCCHHHHHHHHHHHHHHHHcc-CCCEEEEEeeecCCCCC
Q psy11439 1 MENKEV-DGMDILAVREAARFAVNHCRSD-KGPILLETATYRYSGHS 45 (91)
Q Consensus 1 i~~~~v-DG~D~~~v~~a~~~a~~~~R~~-~gP~lie~~tyR~~gHs 45 (91)
+++++| ||+|+.++++|+..| |++ ++|++|+|.|+|-.|.+
T Consensus 206 w~~~~v~DG~D~~ai~~A~~~a----~~~~~~P~~I~~~T~~g~G~~ 248 (653)
T TIGR00232 206 WEVLEVEDGHDLAAIDAAIEEA----KASKDKPTLIEVTTTIGFGSP 248 (653)
T ss_pred CcEEEeCCCCCHHHHHHHHHHH----HhCCCCCEEEEEEeeecccCc
Confidence 367889 999999998777655 455 48999999999999975
No 23
>PRK12753 transketolase; Reviewed
Probab=97.45 E-value=0.00039 Score=55.98 Aligned_cols=42 Identities=29% Similarity=0.218 Sum_probs=36.3
Q ss_pred ceE-EeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCC
Q psy11439 2 ENK-EVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 46 (91)
Q Consensus 2 ~~~-~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~ 46 (91)
+++ .|||+|+.++++|++.|.+ .+++|++|+++|++-.|++.
T Consensus 211 ~~~~~vDGhD~~~i~~a~~~a~~---~~~~P~~I~~~T~kG~G~~~ 253 (663)
T PRK12753 211 HVIHEIDGHDPQAIKEAILEAQS---VKDKPSLIICRTIIGFGSPN 253 (663)
T ss_pred eEEceeCCCCHHHHHHHHHHHHH---CCCCeEEEEEEEeecCCCCc
Confidence 466 4999999999999998875 35789999999999999873
No 24
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=97.31 E-value=0.00058 Score=48.68 Aligned_cols=43 Identities=26% Similarity=0.264 Sum_probs=36.9
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCC
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS 47 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~ 47 (91)
+++.|||+|+.++.+++++|.+. .++|++|++.|.+-.||+..
T Consensus 193 ~~~~v~G~d~~~l~~al~~a~~~---~~~P~~I~~~t~kg~g~~~~ 235 (255)
T cd02012 193 NVIEVDGHDVEEILAALEEAKKS---KGKPTLIIAKTIKGKGVPFM 235 (255)
T ss_pred eEEEECCCCHHHHHHHHHHHHHc---CCCCEEEEEEeecccccCcc
Confidence 56889999999999999888753 27899999999999999843
No 25
>PLN02790 transketolase
Probab=97.22 E-value=0.001 Score=53.52 Aligned_cols=42 Identities=21% Similarity=0.144 Sum_probs=35.3
Q ss_pred CceEEeeC--CCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCC
Q psy11439 1 MENKEVDG--MDILAVREAARFAVNHCRSDKGPILLETATYRYSGHS 45 (91)
Q Consensus 1 i~~~~vDG--~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs 45 (91)
++++.||| +|+.++++|++.|.+. +++|++|+++|++-.|.+
T Consensus 201 ~~~~~vdgg~hd~~~l~~a~~~a~~~---~~~P~lI~~~T~kG~G~~ 244 (654)
T PLN02790 201 WHTIWVKNGNTDYDEIRAAIKEAKAV---TDKPTLIKVTTTIGYGSP 244 (654)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhc---CCCeEEEEEEEeecCCCc
Confidence 36788988 7999999998877642 689999999999999876
No 26
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=97.01 E-value=0.0017 Score=44.90 Aligned_cols=33 Identities=33% Similarity=0.449 Sum_probs=27.8
Q ss_pred EeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecC
Q psy11439 5 EVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 41 (91)
Q Consensus 5 ~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~ 41 (91)
.|||+|+.++.+++++| |+.++|++|++.|+.=
T Consensus 160 ~vdG~d~~~l~~a~~~a----~~~~~P~~I~~~T~kg 192 (195)
T cd02007 160 PVDGHNIEALIKVLKEV----KDLKGPVLLHVVTKKG 192 (195)
T ss_pred eECCCCHHHHHHHHHHH----HhCCCCEEEEEEEecc
Confidence 48999999999888775 4568999999999763
No 27
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=96.47 E-value=0.004 Score=44.44 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=23.7
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHc
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRS 27 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~ 27 (91)
++.+.|||+|+++|++++.+|++++|.
T Consensus 149 ~~~~~VDG~D~~av~~~~a~a~~~~~~ 175 (227)
T cd02011 149 YEPYFVEGDDPETMHQAMAATLDWAIE 175 (227)
T ss_pred CceEEECCCCHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999997764
No 28
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=96.31 E-value=0.0082 Score=48.06 Aligned_cols=37 Identities=32% Similarity=0.501 Sum_probs=31.4
Q ss_pred EeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCC
Q psy11439 5 EVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHS 45 (91)
Q Consensus 5 ~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs 45 (91)
.|||+|+.+++.+++. +++.++|++|+++|.+-.|-+
T Consensus 244 ~vDGhd~~~l~~al~~----ak~~~~P~~i~~~T~KGkG~~ 280 (617)
T TIGR00204 244 PVDGHDLLELIETLKN----AKKLKGPVFLHIQTKKGKGYK 280 (617)
T ss_pred ccCCCCHHHHHHHHHH----HhcCCCCEEEEEEecCCCCCc
Confidence 6899999999999874 456678999999999988744
No 29
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=96.20 E-value=0.012 Score=46.58 Aligned_cols=40 Identities=33% Similarity=0.444 Sum_probs=32.8
Q ss_pred ceE-EeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCC
Q psy11439 2 ENK-EVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHS 45 (91)
Q Consensus 2 ~~~-~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs 45 (91)
+++ .|||+|+.++++++..| ++.++|++|++.|.+-.|.+
T Consensus 208 ~~~~~vdG~d~~~l~~al~~a----~~~~~P~lI~~~T~kg~G~~ 248 (580)
T PRK05444 208 NYIGPIDGHDLDALIETLKNA----KDLKGPVLLHVVTKKGKGYA 248 (580)
T ss_pred CeeeeeCCCCHHHHHHHHHHH----HhCCCCEEEEEEecCCcCCC
Confidence 355 58999999999887654 45679999999999988865
No 30
>PRK05261 putative phosphoketolase; Provisional
Probab=95.13 E-value=0.044 Score=45.31 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=31.3
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHH-----------Hcc---CCCE--EEEEeeec
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHC-----------RSD---KGPI--LLETATYR 40 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~-----------R~~---~gP~--lie~~tyR 40 (91)
+.+.|||+|+.+|+.++.+|++.+ |.+ .+|. +|.++|.-
T Consensus 230 ~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~k 284 (785)
T PRK05261 230 EPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPK 284 (785)
T ss_pred eeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCc
Confidence 567899999999999987776644 445 5899 99999865
No 31
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=95.06 E-value=0.042 Score=44.49 Aligned_cols=32 Identities=31% Similarity=0.365 Sum_probs=27.6
Q ss_pred EeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q psy11439 5 EVDGMDILAVREAARFAVNHCRSDKGPILLETATY 39 (91)
Q Consensus 5 ~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~ty 39 (91)
.+||+|++++.+|+.+|.. ...+|+||+|+|-
T Consensus 217 ~~DG~D~e~I~~Ai~~Ak~---~~dkPtlI~~kTi 248 (663)
T COG0021 217 VIDGHDLEAIDKAIEEAKA---STDKPTLIIVKTI 248 (663)
T ss_pred ecCCCCHHHHHHHHHHHHh---cCCCCeEEEEEee
Confidence 7899999999988888775 3779999999984
No 32
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=95.03 E-value=0.057 Score=35.24 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=21.6
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~t 38 (91)
++++|++ +. .+..+++.+++.+||+|||+.|
T Consensus 138 ~~~~v~~--~~----~l~~a~~~a~~~~~p~~i~v~~ 168 (168)
T cd00568 138 KGVRVED--PE----DLEAALAEALAAGGPALIEVKT 168 (168)
T ss_pred eEEEECC--HH----HHHHHHHHHHhCCCCEEEEEEC
Confidence 4556665 44 4555666666889999999975
No 33
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=94.95 E-value=0.064 Score=40.15 Aligned_cols=40 Identities=30% Similarity=0.289 Sum_probs=30.2
Q ss_pred eEEe-eCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCC
Q psy11439 3 NKEV-DGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHS 45 (91)
Q Consensus 3 ~~~v-DG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs 45 (91)
++.| ||+|+.++++|+..|.. ..++|++|.+.|-.=.|-+
T Consensus 209 v~~v~dGhd~~~i~~A~~~a~~---~~~kP~~Ii~~TvkG~G~~ 249 (332)
T PF00456_consen 209 VIEVCDGHDVEAIYAAIEEAKA---SKGKPTVIIARTVKGKGVP 249 (332)
T ss_dssp EEEEEETTBHHHHHHHHHHHHH---STSS-EEEEEEE-TTTTST
T ss_pred hcccccCcHHHHHHHHHHHHHh---cCCCCceeecceEEecCch
Confidence 5677 99999999999988743 2378999999997766653
No 34
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=94.49 E-value=0.27 Score=33.28 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=30.5
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHH
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQ 60 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~ 60 (91)
++.+|+| ++.++.+++++|. +||.|||+.|-+-.+ ..+ ..++++.+++
T Consensus 125 ~~~~v~~-~~~el~~al~~a~------~gp~lIev~~~~~~~---~~~-~~~~~~~~~~ 172 (179)
T cd03372 125 DNVATVA-SEEAFEKAVEQAL------DGPSFIHVKIKPGNT---DVP-NIPRDPVEIK 172 (179)
T ss_pred CeEEecC-CHHHHHHHHHHhc------CCCEEEEEEEcCCCC---CCC-CCCCCHHHHH
Confidence 5677777 6777766666654 689999999954332 212 2366655443
No 35
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=93.99 E-value=0.04 Score=40.34 Aligned_cols=30 Identities=33% Similarity=0.465 Sum_probs=23.5
Q ss_pred EeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q psy11439 5 EVDGMDILAVREAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 5 ~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~t 38 (91)
-|||.|+.++..+++.+. +-+||+||++.|
T Consensus 241 PiDGHdl~~Li~~l~~~K----~~~gPvllHV~T 270 (270)
T PF13292_consen 241 PIDGHDLEELIEVLENAK----DIDGPVLLHVIT 270 (270)
T ss_dssp EEETT-HHHHHHHHHHHC----CSSSEEEEEEE-
T ss_pred ccCCCCHHHHHHHHHHHh----cCCCCEEEEEeC
Confidence 489999999888776654 579999999987
No 36
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=93.64 E-value=0.19 Score=33.95 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=23.3
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
++++|++ .+.+.+|++.+++.+||+|||+.|.+
T Consensus 143 ~~~~v~~------~~el~~al~~a~~~~~p~liev~~~~ 175 (186)
T cd02015 143 KGLRVEK------PEELEAALKEALASDGPVLLDVLVDP 175 (186)
T ss_pred ceEEeCC------HHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 4555655 33456667777778999999999854
No 37
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=93.13 E-value=0.18 Score=36.28 Aligned_cols=35 Identities=37% Similarity=0.344 Sum_probs=27.1
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATY 39 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~ty 39 (91)
.+++|||+|+.++++|+..+. +..++|.+|-|.|-
T Consensus 207 ~V~evdG~d~~~i~~a~~~~~---~~~~rP~~IIa~Tv 241 (243)
T COG3959 207 EVIEVDGHDIEEIVEALEKAK---GSKGRPTVIIAKTV 241 (243)
T ss_pred eEEEEcCcCHHHHHHHHHhhh---ccCCCCeEEEEecc
Confidence 468999999999988776653 22349999999874
No 38
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=93.09 E-value=0.16 Score=40.99 Aligned_cols=40 Identities=28% Similarity=0.382 Sum_probs=31.0
Q ss_pred eE-EeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCC
Q psy11439 3 NK-EVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHS 45 (91)
Q Consensus 3 ~~-~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs 45 (91)
.+ .|||+|+.++..+++.|.+. .++|++|.++|-.=.|-+
T Consensus 249 ~~~~vdGhd~~~l~~al~~ak~~---~~~P~~I~~~T~kGkG~~ 289 (641)
T PRK12571 249 YVGPIDGHDMEALLSVLRAARAR---ADGPVLVHVVTEKGRGYA 289 (641)
T ss_pred EECccCCCCHHHHHHHHHHHHhC---CCCCEEEEEEecCccCcc
Confidence 34 58999999999998876532 378999999997755643
No 39
>PRK07524 hypothetical protein; Provisional
Probab=92.93 E-value=0.25 Score=38.52 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=25.0
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCC
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGH 44 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gH 44 (91)
+.+|+ ++.++-. |++.+.+.+||+|||+.++|+++-
T Consensus 499 ~~~v~--~~~el~~----al~~a~~~~~p~liev~~~~~~~~ 534 (535)
T PRK07524 499 AERVA--DLEQLQA----ALRAAFARPGPTLIEVDQACWFAA 534 (535)
T ss_pred EEEeC--CHHHHHH----HHHHHHhCCCCEEEEEECCccccc
Confidence 44453 5555544 455555679999999999999863
No 40
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=92.36 E-value=0.41 Score=38.93 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=32.4
Q ss_pred eE-EeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCC
Q psy11439 3 NK-EVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 46 (91)
Q Consensus 3 ~~-~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~ 46 (91)
.+ .|||+|+.++..+++.+.. ..+.+|++|.++|-.=.|-+.
T Consensus 286 ~~g~vDGHd~~~l~~al~~~k~--~~~~~P~vI~~~T~KGkGv~~ 328 (641)
T PLN02234 286 YVGPVDGHNIDDLVSILETLKS--TKTIGPVLIHVVTEKGRGYPY 328 (641)
T ss_pred EEeeECCCCHHHHHHHHHHHHh--cCCCCCEEEEEEEecCCCcch
Confidence 34 7999999999999987532 223589999999987776653
No 41
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=91.89 E-value=0.46 Score=32.47 Aligned_cols=36 Identities=17% Similarity=0.053 Sum_probs=26.6
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecC
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 41 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~ 41 (91)
+.+|+ ++.++..++++|++.+|. +||+|||+.+.+.
T Consensus 146 ~~~v~--~~~el~~al~~a~~~~~~-~~p~liev~v~~~ 181 (196)
T cd02013 146 GITVD--KPEDVGPALQKAIAMMAE-GKTTVIEIVCDQE 181 (196)
T ss_pred EEEEC--CHHHHHHHHHHHHhcCCC-CCeEEEEEEeCcc
Confidence 44554 478888888888876655 7899999998543
No 42
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=91.84 E-value=0.4 Score=37.81 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=29.7
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~t 38 (91)
++.+|+ ++.++..++++|++.+++++||+|||+.+
T Consensus 532 ~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 532 YGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred CceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 345554 88999999999999988889999999975
No 43
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=91.60 E-value=0.48 Score=31.46 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=21.0
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~t 38 (91)
++.+|+ ++.++-.++++ +++.+||.|||+.+
T Consensus 141 ~~~~v~--~~~el~~al~~----a~~~~~p~liev~i 171 (172)
T cd02004 141 KGELVT--TPEELKPALKR----ALASGKPALINVII 171 (172)
T ss_pred eEEEEC--CHHHHHHHHHH----HHHcCCCEEEEEEc
Confidence 566776 36665555444 45568999999975
No 44
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=91.50 E-value=0.29 Score=39.57 Aligned_cols=32 Identities=25% Similarity=0.464 Sum_probs=26.4
Q ss_pred EeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 5 EVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 5 ~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
-|||+|+.++..+++. +|+.+||+||++.|--
T Consensus 249 PiDGHni~~Li~~Lk~----~kd~~gPvllHv~T~K 280 (627)
T COG1154 249 PIDGHNLEELIPTLKN----AKDLKGPVLLHVVTKK 280 (627)
T ss_pred CcCCCCHHHHHHHHHH----HhcCCCCEEEEEEecC
Confidence 3799999998887765 4568999999999843
No 45
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=91.44 E-value=0.53 Score=31.26 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=21.1
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~t 38 (91)
++.+|++ +.++.+++++|+ +.++|++||+.+
T Consensus 148 ~~~~v~~--~~el~~al~~a~----~~~~p~vi~v~v 178 (178)
T cd02002 148 EAERVET--PEELDEALREAL----AEGGPALIEVVV 178 (178)
T ss_pred ceEEeCC--HHHHHHHHHHHH----hCCCCEEEEEEC
Confidence 4556666 666655555554 478999999863
No 46
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=91.37 E-value=0.33 Score=31.58 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=24.5
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLET 36 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~ 36 (91)
++.+|+..|+.++-+++++|+ +.+||+|||+
T Consensus 123 ~~~~v~~~~~~el~~al~~a~----~~~gp~vIeV 153 (153)
T PF02775_consen 123 KGARVTTPDPEELEEALREAL----ESGGPAVIEV 153 (153)
T ss_dssp EEEEESCHSHHHHHHHHHHHH----HSSSEEEEEE
T ss_pred cEEEEccCCHHHHHHHHHHHH----hCCCcEEEEc
Confidence 456777777788877777777 7899999986
No 47
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=91.36 E-value=0.29 Score=39.94 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=30.4
Q ss_pred EeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCC
Q psy11439 5 EVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHS 45 (91)
Q Consensus 5 ~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs 45 (91)
.|||+|+.++..+++.|.+. ..++|++|++.|-.=.|-.
T Consensus 288 ~iDGHd~~~L~~al~~~k~~--~~~~P~vihv~T~KGkG~~ 326 (677)
T PLN02582 288 PVDGHNIDDLVTILREVKST--KTTGPVLIHVVTEKGRGYP 326 (677)
T ss_pred eeCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecCCCCCC
Confidence 68999999999998877532 1268999999997655543
No 48
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=89.54 E-value=0.74 Score=30.65 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEE
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLET 36 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~ 36 (91)
.++..+-.++..|+..+..++||++|++
T Consensus 133 ~~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 133 TDPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 3667888899999999999999999986
No 49
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=89.50 E-value=0.49 Score=38.85 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=25.5
Q ss_pred EeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q psy11439 5 EVDGMDILAVREAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 5 ~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~t 38 (91)
-|||+|+.++..+++.+.+. ...||+||++.|
T Consensus 332 pvDGHdi~~Li~~l~~~k~~--~~~~PvlvHv~T 363 (701)
T PLN02225 332 PVDGHNIEDLVCVLREVSSL--DSMGPVLVHVIT 363 (701)
T ss_pred ccCCCCHHHHHHHHHHHHcC--CCCCCEEEEEEe
Confidence 38999999999888877532 124999999999
No 50
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=88.23 E-value=1.4 Score=29.50 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=16.9
Q ss_pred HHHHHHHHccCCCEEEEEeeec
Q psy11439 19 RFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 19 ~~a~~~~R~~~gP~lie~~tyR 40 (91)
+.+++.+++.++|+|||+.+-+
T Consensus 153 ~~~l~~a~~~~~p~liev~~~~ 174 (178)
T cd02014 153 EAALDEALAADGPVVIDVVTDP 174 (178)
T ss_pred HHHHHHHHhCCCCEEEEEEeCC
Confidence 5566666677899999998854
No 51
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=87.07 E-value=1.5 Score=29.32 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEE
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLET 36 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~ 36 (91)
.++..+-.++..|++.++.++||++|++
T Consensus 129 ~~~~~~~~~i~~A~~~a~~~~GPV~l~i 156 (164)
T cd07039 129 TSPEQLPELLDRAIRTAIAKRGVAVLIL 156 (164)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4778888899999999998999999987
No 52
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=86.48 E-value=2 Score=28.78 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=23.8
Q ss_pred ceEEe-eCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q psy11439 2 ENKEV-DGMDILAVREAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 2 ~~~~v-DG~D~~~v~~a~~~a~~~~R~~~gP~lie~~t 38 (91)
++.+| ++.|+.++.+++++|. +.+||.||++.+
T Consensus 143 ~~~~v~~~~~l~~~~~al~~a~----~~~gp~lI~v~~ 176 (178)
T cd02008 143 KRVVVVDPYDLKAIREELKEAL----AVPGVSVIIAKR 176 (178)
T ss_pred CEEEecCccCHHHHHHHHHHHH----hCCCCEEEEEeC
Confidence 34555 6778877767777765 458999999864
No 53
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=86.03 E-value=4.1 Score=31.37 Aligned_cols=66 Identities=23% Similarity=0.247 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCC--C-CCC---CCCCCHHHHHHHHhCCChHHHHHHHHH
Q psy11439 8 GMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM--S-DPG---TSYRTRDEIQEVRQTRDPISSLKDKIL 77 (91)
Q Consensus 8 G~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~--~-D~~---~~Yr~~~e~~~~~~~~DPi~~~~~~L~ 77 (91)
|+|+.++++|+.+|... .++|++|-+.|--=.|-+. . +.. ..--+++|++..++.-+ +++|...|.
T Consensus 289 GhD~~~i~~A~~~a~~~---~~kPt~Iia~TikG~G~~~~~e~~~~~h~~~~~~~~e~~~~~~~lg-~~~~~~~~~ 360 (386)
T cd02017 289 GHDPRKVYAAYKKAVEH---KGKPTVILAKTIKGYGLGAAGEGRNHAHQVKKMTEDELKALRDRFG-IPVSDEQLE 360 (386)
T ss_pred CCCHHHHHHHHHHHHhC---CCCCeEEEEeCeecCCCChhccCCcchhcCCCCCHHHHHHHHHHcC-CCCCHHHhc
Confidence 99999999999876642 3579999999988666552 1 221 01336777776654322 444544443
No 54
>PRK06163 hypothetical protein; Provisional
Probab=85.89 E-value=3.7 Score=28.52 Aligned_cols=43 Identities=23% Similarity=0.266 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHH
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQE 61 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~ 61 (91)
++.++..++++++ +.+||.|||+.+-+- .+.+...|++.|++.
T Consensus 148 ~~~el~~al~~a~----~~~~p~lIeV~i~~~-----~~~~~~~~~~~~~~~ 190 (202)
T PRK06163 148 DEAHFEALVDQAL----SGPGPSFIAVRIDDK-----PGVGTTERDPAQIRE 190 (202)
T ss_pred CHHHHHHHHHHHH----hCCCCEEEEEEecCC-----CCCCCCCCCHHHHHH
Confidence 5666666666654 568999999988532 232333788888753
No 55
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=85.03 E-value=4.8 Score=34.13 Aligned_cols=39 Identities=23% Similarity=0.174 Sum_probs=30.7
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCC
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHS 45 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs 45 (91)
..-+|+|+.++++|+..|.+. .++|++|-|.|--=+|-+
T Consensus 356 l~rgGHD~~~I~~A~~~A~~~---~grPTvIlA~TvKG~G~~ 394 (885)
T TIGR00759 356 LNRGGHDPRKVYAAYAAAQEH---KGQPTVILAKTIKGYGMG 394 (885)
T ss_pred ccCCCCCHHHHHHHHHHHHhC---CCCCEEEEEeeeecCCCC
Confidence 456899999999999888753 347999999997655544
No 56
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=84.49 E-value=2.6 Score=28.50 Aligned_cols=30 Identities=17% Similarity=-0.024 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 8 GMDILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 8 G~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
..++.++.++++++++ ..+||+|||+.+.+
T Consensus 146 v~~~~el~~al~~a~~---~~~~p~liev~~~~ 175 (183)
T cd02005 146 VKTEGELDEALKDALF---NRDKLSLIEVILPK 175 (183)
T ss_pred ecCHHHHHHHHHHHHh---cCCCcEEEEEEcCc
Confidence 3567777666666664 26899999999854
No 57
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=84.23 E-value=4.4 Score=34.33 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=28.1
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCC
Q psy11439 7 DGMDILAVREAARFAVNHCRSDKGPILLETATYRYSG 43 (91)
Q Consensus 7 DG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~g 43 (91)
+|+|+.++++|...|++. .++|++|.++|.-=+|
T Consensus 359 gGHD~~~i~~A~~~A~~~---~~~PTvIla~TvkG~G 392 (889)
T TIGR03186 359 GGHDARKLYAAYDRAVRH---EGRPTVILAKTMKGFG 392 (889)
T ss_pred CCCCHHHHHHHHHHHHhC---CCCCEEEEEEeeecCC
Confidence 899999999999998863 3589999999955333
No 58
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=84.19 E-value=2.2 Score=29.19 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
++.++-.++++|++.+++.++|+|||+.+-+
T Consensus 165 ~~~el~~al~~a~~~~~~~~~p~liev~i~~ 195 (202)
T cd02006 165 KPEELAAAFEQAKKLMAEHRVPVVVEAILER 195 (202)
T ss_pred CHHHHHHHHHHHHHhcccCCCcEEEEEEecc
Confidence 4666666667766655556899999998743
No 59
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=83.93 E-value=2.3 Score=27.43 Aligned_cols=28 Identities=29% Similarity=0.300 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHHHcc-CCCEEEEE
Q psy11439 9 MDILAVREAARFAVNHCRSD-KGPILLET 36 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~-~gP~lie~ 36 (91)
.++.++...+..|+..+..+ +||+.|++
T Consensus 125 ~~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 125 TSPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 47789999999999999988 79999986
No 60
>PRK08266 hypothetical protein; Provisional
Probab=83.65 E-value=3.1 Score=32.50 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=19.0
Q ss_pred HHHHHHHHccCCCEEEEEeeecCCCC
Q psy11439 19 RFAVNHCRSDKGPILLETATYRYSGH 44 (91)
Q Consensus 19 ~~a~~~~R~~~gP~lie~~tyR~~gH 44 (91)
..|++.+.+.+||+|||+.|+|-..+
T Consensus 505 ~~al~~a~~~~~p~liev~i~~~~~~ 530 (542)
T PRK08266 505 RAALEAALAHGGPVLIEVPVPRGSEA 530 (542)
T ss_pred HHHHHHHHhCCCcEEEEEEecCCCCc
Confidence 44455555678999999999887544
No 61
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=83.48 E-value=1.8 Score=21.28 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=16.1
Q ss_pred ChHHHHHHHHHHcCCCCHHHHhh
Q psy11439 67 DPISSLKDKILNASLVTPEELKR 89 (91)
Q Consensus 67 DPi~~~~~~L~~~g~~~~~e~~~ 89 (91)
+++..++. |.+.|.+|++|..+
T Consensus 3 ~~L~~L~~-l~~~G~IseeEy~~ 24 (31)
T PF09851_consen 3 DRLEKLKE-LYDKGEISEEEYEQ 24 (31)
T ss_pred HHHHHHHH-HHHcCCCCHHHHHH
Confidence 45555655 56899999999865
No 62
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=83.13 E-value=2.2 Score=27.73 Aligned_cols=30 Identities=10% Similarity=0.062 Sum_probs=26.6
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q psy11439 7 DGMDILAVREAARFAVNHCRSDKGPILLET 36 (91)
Q Consensus 7 DG~D~~~v~~a~~~a~~~~R~~~gP~lie~ 36 (91)
.-.++.++...+..|++.++.+++|++|-.
T Consensus 129 ~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 129 APSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred eCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 446899999999999999999999999854
No 63
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=82.90 E-value=3.7 Score=28.15 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=16.2
Q ss_pred HHHHHHHHccCCCEEEEEeeec
Q psy11439 19 RFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 19 ~~a~~~~R~~~gP~lie~~tyR 40 (91)
..|++.+.+.+||+|||+.+-+
T Consensus 164 ~~al~~a~~~~gp~lIeV~v~~ 185 (205)
T cd02003 164 KAALAKAKASDRTTVIVIKTDP 185 (205)
T ss_pred HHHHHHHHhCCCCEEEEEEeec
Confidence 4455555567999999999854
No 64
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=82.17 E-value=1.9 Score=34.22 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=26.2
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCC
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYS 42 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~ 42 (91)
++.+|+ ++.++..++++|++..+ .+||+|||+.+-+-.
T Consensus 528 ~~~~v~--~~~el~~al~~a~~~~~-~~~p~lIev~~~~~~ 565 (588)
T PRK07525 528 EGVVVD--TQEELGPALKRAIDAQN-EGKTTVIEIMCNQEL 565 (588)
T ss_pred eEEEEC--CHHHHHHHHHHHHhcCC-CCCcEEEEEEecccc
Confidence 345553 67777777777776542 368999999985443
No 65
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=82.04 E-value=5 Score=34.04 Aligned_cols=38 Identities=26% Similarity=0.246 Sum_probs=30.6
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCC
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGH 44 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gH 44 (91)
..-+|+|+.++++|+..|.+. .++|++|-+.|--=.|-
T Consensus 362 l~~gGHD~~~i~~A~~~A~~~---~~~PtvIia~TvkG~G~ 399 (891)
T PRK09405 362 LNRGGHDPRKVYAAYKAAVEH---KGQPTVILAKTIKGYGM 399 (891)
T ss_pred hccCCCCHHHHHHHHHHHHhC---CCCCEEEEEeceecCCC
Confidence 356899999999999988753 36799999999765554
No 66
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=81.48 E-value=8.7 Score=26.14 Aligned_cols=44 Identities=18% Similarity=0.098 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHH
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQ 60 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~ 60 (91)
++.++.+++++|+ +.++|+|||+.+-+-.+ ..... .++++.+.+
T Consensus 138 ~~~el~~al~~a~----~~~~p~lIev~~~~~~~-~~~~~--~~~~~~~~~ 181 (188)
T cd03371 138 SLEELVAALAKAL----AADGPAFIEVKVRPGSR-SDLGR--PTTSPIENK 181 (188)
T ss_pred CHHHHHHHHHHHH----hCCCCEEEEEEecCCCC-CCCCC--CCCCHHHHH
Confidence 6777766666664 46899999999854432 22221 255665553
No 67
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=80.43 E-value=5 Score=25.49 Aligned_cols=29 Identities=10% Similarity=0.257 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q psy11439 8 GMDILAVREAARFAVNHCRSDKGPILLET 36 (91)
Q Consensus 8 G~D~~~v~~a~~~a~~~~R~~~gP~lie~ 36 (91)
-.++.+....+..|+..+..++||++|++
T Consensus 124 ~~~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 124 SPSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred eCCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 45677888888999999988899999976
No 68
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=80.10 E-value=11 Score=32.10 Aligned_cols=33 Identities=30% Similarity=0.274 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCC
Q psy11439 8 GMDILAVREAARFAVNHCRSDKGPILLETATYRYSG 43 (91)
Q Consensus 8 G~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~g 43 (91)
|+|+.++++|...|.+. .++|++|-+.|--=.|
T Consensus 374 GHD~~~i~~A~~~a~~~---~~~PtvIla~TvkG~G 406 (896)
T PRK13012 374 GHDPRKVYAAYAAAVRH---KGQPTVILAKTKKGYG 406 (896)
T ss_pred CCCHHHHHHHHHHHHhC---CCCCEEEEEEeeecCC
Confidence 99999999999988753 3579999999966444
No 69
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=79.60 E-value=2.3 Score=23.71 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=15.6
Q ss_pred HHHHHHHcCCCCHHHHhhhC
Q psy11439 72 LKDKILNASLVTPEELKREL 91 (91)
Q Consensus 72 ~~~~L~~~g~~~~~e~~~~~ 91 (91)
.++-+++.|++|++++++.+
T Consensus 28 vre~v~~~g~lt~ee~d~ll 47 (55)
T PF10415_consen 28 VREVVLEEGLLTEEELDELL 47 (55)
T ss_dssp HHHHHHHTTSS-HHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHc
Confidence 56667899999999999864
No 70
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=79.44 E-value=6.5 Score=25.97 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~t 38 (91)
.++.++.+++++|++ .+||.|||+.+
T Consensus 129 ~~~~el~~al~~a~~----~~gp~vi~v~i 154 (157)
T cd02001 129 PLLGGLGSEFAGLLA----TTGPTLLHAPI 154 (157)
T ss_pred CCHHHHHHHHHHHHh----CCCCEEEEEEe
Confidence 357777666666654 68999999987
No 71
>PRK13683 hypothetical protein; Provisional
Probab=78.94 E-value=4.4 Score=24.90 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=25.8
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCC
Q psy11439 7 DGMDILAVREAARFAVNHCRSDKGPILLETATYRYSG 43 (91)
Q Consensus 7 DG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~g 43 (91)
+-.|..++|+-+..|++ .+.|.|||+.|-+.-+
T Consensus 21 e~edA~alYq~I~~am~----sg~P~llELtCek~~~ 53 (87)
T PRK13683 21 EAEDAEALYQQIRQAMR----SGNPRLLELTCEKVED 53 (87)
T ss_pred cHHHHHHHHHHHHHHHh----cCCCcEEEEEecCcCC
Confidence 44677888888888883 4779999999987554
No 72
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=78.26 E-value=4 Score=27.19 Aligned_cols=27 Identities=7% Similarity=0.042 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEE
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLET 36 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~ 36 (91)
.+++++ .++..|++.+.+++||+.|=+
T Consensus 126 ~~~e~~-~~i~~A~~~a~~~~gPv~il~ 152 (157)
T TIGR03845 126 REPEEA-KLIEKAISDAYENSRPVAALL 152 (157)
T ss_pred CCHHHH-HHHHHHHHHHHhCCCCEEEEE
Confidence 358899 999999999999999999865
No 73
>PRK11269 glyoxylate carboligase; Provisional
Probab=77.80 E-value=5.7 Score=31.54 Aligned_cols=32 Identities=16% Similarity=0.078 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
.++.++..++++|++.+.+.+||+|||+.+-+
T Consensus 526 ~~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 526 FKPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred CCHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 45667777777777665567899999999854
No 74
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=77.72 E-value=4.1 Score=27.31 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEE
Q psy11439 14 VREAARFAVNHCRSDK-GPILLET 36 (91)
Q Consensus 14 v~~a~~~a~~~~R~~~-gP~lie~ 36 (91)
+-..+..|+..++.+. ||++|++
T Consensus 137 ~~~~i~~A~~~A~~~~~GPv~l~i 160 (162)
T cd07037 137 LLRLANRAVLEALSAPPGPVHLNL 160 (162)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEec
Confidence 7788999999999986 9999986
No 75
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=77.64 E-value=5.1 Score=31.30 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=17.1
Q ss_pred HHHHHHHHHHccCCCEEEEEee
Q psy11439 17 AARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 17 a~~~a~~~~R~~~gP~lie~~t 38 (91)
.+..|++.+++.+||+|||+.|
T Consensus 508 ~l~~al~~a~~~~~p~liev~~ 529 (530)
T PRK07092 508 ELADALARALAADGPVLVEVEV 529 (530)
T ss_pred HHHHHHHHHHhCCCCEEEEEEc
Confidence 3466666777789999999975
No 76
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=77.44 E-value=4.2 Score=27.30 Aligned_cols=27 Identities=7% Similarity=-0.032 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
++.++..++++| .+.+||+|||+.+-+
T Consensus 145 ~~~el~~al~~a----~~~~~p~liev~~~~ 171 (177)
T cd02010 145 SADDLLPVLERA----LAADGVHVIDCPVDY 171 (177)
T ss_pred CHHHHHHHHHHH----HhCCCCEEEEEEecc
Confidence 455555555555 457899999999844
No 77
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=76.30 E-value=6.6 Score=31.15 Aligned_cols=32 Identities=34% Similarity=0.394 Sum_probs=22.4
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
+.+|+ ++.++..++++|+ +.+||+|||+.+-+
T Consensus 500 ~~~v~--~~~el~~al~~a~----~~~gp~lIev~~~~ 531 (578)
T PRK06546 500 AVRVE--DPKDVRGALREAF----AHPGPALVDVVTDP 531 (578)
T ss_pred eEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 44554 6777766666655 47899999998843
No 78
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=75.42 E-value=5.5 Score=31.48 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEE
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLET 36 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~ 36 (91)
.++..+...+..|+..+..++||++|++
T Consensus 130 ~~~~~~~~~i~~A~~~A~~~~GPV~l~i 157 (579)
T TIGR03457 130 RHPSRMAEVLNRCFERAWREMGPAQLNI 157 (579)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4778888999999999999999999998
No 79
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=74.88 E-value=4.8 Score=26.87 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=14.2
Q ss_pred HHHHHHHHccCCCEEEEEee
Q psy11439 19 RFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 19 ~~a~~~~R~~~gP~lie~~t 38 (91)
..|++.+.+.++|+|||+.+
T Consensus 155 ~~al~~a~~~~~p~lIev~v 174 (175)
T cd02009 155 EQALESALAQDGPHVIEVKT 174 (175)
T ss_pred HHHHHHHHhCCCCEEEEEeC
Confidence 44445555678999999975
No 80
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=73.87 E-value=19 Score=27.30 Aligned_cols=48 Identities=23% Similarity=0.195 Sum_probs=30.4
Q ss_pred eeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHH
Q psy11439 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQ 60 (91)
Q Consensus 6 vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~ 60 (91)
+...++.++..++++|. +.+||.|||+.+-.-. ..|-+.-..|+.|.+
T Consensus 307 ~~v~~~~eL~~al~~a~----~~~gp~lIeV~v~~g~---~~~l~rp~~~p~e~~ 354 (361)
T TIGR03297 307 YEVSTLEELETALTAAS----SANGPRLIEVKVRPGS---RADLGRPTTSPPENK 354 (361)
T ss_pred EEeCCHHHHHHHHHHHH----hCCCcEEEEEEecCCC---ccCCCCCCCCHHHHH
Confidence 45577888877777764 4588999999873322 223222245777665
No 81
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=73.18 E-value=4.7 Score=26.70 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHHH-HccCCCEEEEE
Q psy11439 9 MDILAVREAARFAVNHC-RSDKGPILLET 36 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~-R~~~gP~lie~ 36 (91)
.++.++..++..|+..+ ...+||++|++
T Consensus 131 ~~~~~~~~~~~~A~~~a~~~~~gPv~l~i 159 (172)
T PF02776_consen 131 TSPDDLPEALDRAFRAATSGRPGPVYLEI 159 (172)
T ss_dssp CSGGGHHHHHHHHHHHHHHCSTSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhccCCCccEEEEc
Confidence 36777888899999999 88899999988
No 82
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=72.00 E-value=9.7 Score=30.32 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
.++.++-.+.++|++.+.+.++|+|||+.+-+
T Consensus 525 ~~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 525 FKPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred CCHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 34666666666666555456899999999843
No 83
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=71.88 E-value=9 Score=30.41 Aligned_cols=21 Identities=14% Similarity=0.412 Sum_probs=16.0
Q ss_pred HHHHHHHHccCCCEEEEEeee
Q psy11439 19 RFAVNHCRSDKGPILLETATY 39 (91)
Q Consensus 19 ~~a~~~~R~~~gP~lie~~ty 39 (91)
..|++.+++.+||.|||+.+-
T Consensus 535 ~~al~~a~~~~~p~liev~v~ 555 (585)
T CHL00099 535 KSSLKEALDYDGPVLIDCQVI 555 (585)
T ss_pred HHHHHHHHhCCCCEEEEEEEC
Confidence 455555556789999999984
No 84
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=71.71 E-value=4.4 Score=23.47 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=19.9
Q ss_pred HHHHHHHHHccCCCEEEEEeeecCCCC
Q psy11439 18 ARFAVNHCRSDKGPILLETATYRYSGH 44 (91)
Q Consensus 18 ~~~a~~~~R~~~gP~lie~~tyR~~gH 44 (91)
..+|++.|++.++|+||.+ +=.++++
T Consensus 6 ~~~al~~A~~~~kpvlv~f-~a~wC~~ 31 (82)
T PF13899_consen 6 YEEALAEAKKEGKPVLVDF-GADWCPP 31 (82)
T ss_dssp HHHHHHHHHHHTSEEEEEE-ETTTTHH
T ss_pred HHHHHHHHHHcCCCEEEEE-ECCCCHh
Confidence 4678999999999999998 3344433
No 85
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=71.50 E-value=8.8 Score=30.12 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=21.6
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
+++|+. +.++..++.+|+ +.+||+|||+.+-+
T Consensus 506 ~~~v~~--~~~l~~al~~a~----~~~~p~liev~~~~ 537 (558)
T TIGR00118 506 GIRIEK--PEELDEKLKEAL----SSNEPVLLDVVVDK 537 (558)
T ss_pred EEEECC--HHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 444444 566666666665 45899999999854
No 86
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=70.88 E-value=8.1 Score=30.76 Aligned_cols=29 Identities=10% Similarity=-0.030 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
+++..+...+..|+..+..++||++|++=
T Consensus 134 ~~~~~~~~~l~~A~~~A~~~~gPV~i~iP 162 (597)
T PRK08273 134 TVPEQLRHLVDRAVRTALAERTVTAVILP 162 (597)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 46778888899999999999999999874
No 87
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=70.78 E-value=12 Score=25.55 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=20.2
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q psy11439 7 DGMDILAVREAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 7 DG~D~~~v~~a~~~a~~~~R~~~gP~lie~~t 38 (91)
.-.++.++.+++++|+ +.+||.+||+.+
T Consensus 156 ~v~~~~el~~al~~al----~~~gp~vIev~~ 183 (193)
T cd03375 156 FSGDIKQLKEIIKKAI----QHKGFSFVEVLS 183 (193)
T ss_pred ecCCHHHHHHHHHHHH----hcCCCEEEEEEC
Confidence 3456777766666666 468999999964
No 88
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=70.15 E-value=6.8 Score=24.65 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
.+.......+...++.++..++|++|+|.
T Consensus 58 ~~~~~~~~~~~~~i~~~~~~~~~VlVHC~ 86 (138)
T smart00195 58 TKISPYFPEAVEFIEDAEKKGGKVLVHCQ 86 (138)
T ss_pred CChHHHHHHHHHHHHHHhcCCCeEEEECC
Confidence 45566667777777778888999999995
No 89
>PLN02470 acetolactate synthase
Probab=69.99 E-value=7.8 Score=30.73 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
+++..+..++..|+..++.++ ||++|++=
T Consensus 142 ~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP 171 (585)
T PLN02470 142 MDVEDIPRVIREAFFLASSGRPGPVLVDIP 171 (585)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCeEEEEec
Confidence 578899999999999999986 99999984
No 90
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=69.81 E-value=11 Score=29.80 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=17.7
Q ss_pred HHHHHHHHHccCCCEEEEEeeec
Q psy11439 18 ARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 18 ~~~a~~~~R~~~gP~lie~~tyR 40 (91)
+..|++.+.+.+||+|||+.+.+
T Consensus 527 l~~al~~a~~~~~p~lieV~vd~ 549 (571)
T PRK07710 527 AKEQLQHAIELQEPVVIDCRVLQ 549 (571)
T ss_pred HHHHHHHHHhCCCCEEEEEEecC
Confidence 35566666678999999999864
No 91
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=69.40 E-value=8.6 Score=30.49 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
.++..+...+..|+..++.++||++|++-
T Consensus 134 ~~~~~~~~~i~rA~~~A~~~~GPV~i~iP 162 (588)
T PRK07525 134 RDPSRMAEVLNRVFDKAKRESGPAQINIP 162 (588)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 57788889999999999999999999983
No 92
>PLN02573 pyruvate decarboxylase
Probab=68.40 E-value=9.5 Score=30.35 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEE
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLET 36 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~ 36 (91)
.++..+...+..|+..++.+.||++|++
T Consensus 152 ~~~~~~~~~l~~A~~~A~~~~gPV~l~i 179 (578)
T PLN02573 152 NNLEDAHELIDTAISTALKESKPVYISV 179 (578)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3677888889999999999999999998
No 93
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=68.16 E-value=13 Score=31.28 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=28.6
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCCCEEEEEee---ecCCCC
Q psy11439 7 DGMDILAVREAARFAVNHCRSDKGPILLETAT---YRYSGH 44 (91)
Q Consensus 7 DG~D~~~v~~a~~~a~~~~R~~~gP~lie~~t---yR~~gH 44 (91)
-|.|+..||+|.+.|.++- ++|++|-+.| |++..+
T Consensus 362 GGHD~~ki~aA~~~A~~~k---g~PtvilA~TIKGyglg~~ 399 (887)
T COG2609 362 GGHDPEKVYAAFKKAQEHK---GRPTVILAKTIKGYGLGEA 399 (887)
T ss_pred CCCCHHHHHHHHHHHhcCC---CCceEEEEeeeccccCchh
Confidence 4899999999999988642 4799999988 887733
No 94
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=67.58 E-value=16 Score=25.79 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=27.2
Q ss_pred eeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCC
Q psy11439 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDP 49 (91)
Q Consensus 6 vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~ 49 (91)
+...++.++.+++++|++ .+||+|||+.+.=...|...|+
T Consensus 171 ~~v~~~~el~~al~~a~~----~~gP~lIev~~~C~~~~~~~~~ 210 (235)
T cd03376 171 ASVAYPEDLYKKVKKALS----IEGPAYIHILSPCPTGWRFDPS 210 (235)
T ss_pred EcCCCHHHHHHHHHHHHh----CCCCEEEEEECCCCCCCCCCHH
Confidence 455778888777777664 5899999997754444444443
No 95
>PRK08611 pyruvate oxidase; Provisional
Probab=67.19 E-value=11 Score=29.88 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEE
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLET 36 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~ 36 (91)
+++..+..++..|+..+..++||++|++
T Consensus 134 ~~~~~~~~~l~~A~~~A~~~~GPV~l~i 161 (576)
T PRK08611 134 MSAENLPEIVNQAIRTAYEKKGVAVLTI 161 (576)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCCEEEEe
Confidence 5788888999999999999999999998
No 96
>PRK07586 hypothetical protein; Validated
Probab=67.00 E-value=11 Score=29.17 Aligned_cols=29 Identities=21% Similarity=0.031 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHHHcc-CCCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSD-KGPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~-~gP~lie~~ 37 (91)
.++..+...+..|+..++.+ .||++|++=
T Consensus 130 ~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 159 (514)
T PRK07586 130 ESAADVAADAAAAVAAARGAPGQVATLILP 159 (514)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 46778888899999999998 699999983
No 97
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=66.64 E-value=11 Score=29.52 Aligned_cols=31 Identities=13% Similarity=0.035 Sum_probs=26.6
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 7 DGMDILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 7 DG~D~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
--.++..+..++..|+..+..+.||++|++=
T Consensus 128 ~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP 158 (549)
T PRK06457 128 ILINPENAEYIIRRAIREAISKRGVAHINLP 158 (549)
T ss_pred EeCCHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 3467788889999999999999999999983
No 98
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=66.57 E-value=14 Score=29.08 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=16.8
Q ss_pred HHHHHHHHHccCCCEEEEEeeec
Q psy11439 18 ARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 18 ~~~a~~~~R~~~gP~lie~~tyR 40 (91)
+..+++.+++.+||+|||+.+-+
T Consensus 517 l~~al~~a~~~~gp~li~v~~~~ 539 (557)
T PRK08199 517 FAPAFERALASGKPALIEIRIDP 539 (557)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCH
Confidence 34555555667999999999844
No 99
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=66.48 E-value=10 Score=29.87 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
+++..+..++..|+..++.++ ||++|++=
T Consensus 132 ~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP 161 (563)
T PRK08527 132 KSIEELPRILKEAFYIARSGRPGPVHIDIP 161 (563)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 688999999999999999987 89999984
No 100
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=66.31 E-value=10 Score=30.19 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
+++.++..+++.|+..++.++ ||++|++=
T Consensus 133 ~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP 162 (588)
T TIGR01504 133 REAALVPRVLQQAFHLMRSGRPGPVLIDLP 162 (588)
T ss_pred CCHHHHHHHHHHHHHHHccCCCCeEEEEeC
Confidence 478889999999999999986 99999984
No 101
>PRK06154 hypothetical protein; Provisional
Probab=66.26 E-value=13 Score=29.44 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=23.2
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSDKGPILLETATY 39 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~ty 39 (91)
+.+|+ ++.++..++++|++..+ .++|+|||+.+-
T Consensus 522 g~~V~--~~~el~~al~~a~~~~~-~~~p~lIev~v~ 555 (565)
T PRK06154 522 GERVE--DPEMLVPALLRALRKVK-EGTPALLEVITS 555 (565)
T ss_pred EEEEC--CHHHHHHHHHHHHhhcc-CCCeEEEEEEeC
Confidence 44443 56777777777776544 467999999873
No 102
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=66.11 E-value=29 Score=25.66 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=28.6
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCCCEEEEEee--ecCCCCCCCCCCCCCCCHHHHHHHH
Q psy11439 7 DGMDILAVREAARFAVNHCRSDKGPILLETAT--YRYSGHSMSDPGTSYRTRDEIQEVR 63 (91)
Q Consensus 7 DG~D~~~v~~a~~~a~~~~R~~~gP~lie~~t--yR~~gHs~~D~~~~Yr~~~e~~~~~ 63 (91)
.-.++.++..++++|+ +.+||.|||+.+ .-+++..+ ..+++.++.+|-
T Consensus 175 ~v~~~~eL~~ai~~A~----~~~GpalIeV~~~C~~~~~~~~-----~~~~~~~~~~~~ 224 (301)
T PRK05778 175 FAGDVKQLVELIKKAI----SHKGFAFIDVLSPCVTFNGRNT-----STKSPAYMREYY 224 (301)
T ss_pred ccCCHHHHHHHHHHHH----hCCCCEEEEEcCCCCCCCCcCC-----cccCHHHHHHHH
Confidence 3456666666666655 468999999754 33333222 245666676663
No 103
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=65.86 E-value=10 Score=29.96 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
+++..+...+..|+..++.+. ||++|++=
T Consensus 133 ~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP 162 (574)
T PRK07979 133 KQTEDIPQVLKKAFWLAASGRPGPVVVDLP 162 (574)
T ss_pred CCHHHHHHHHHHHHHHHccCCCCcEEEEcC
Confidence 478899999999999999996 99999983
No 104
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=64.44 E-value=15 Score=29.01 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=16.5
Q ss_pred HHHHHHHHccCCCEEEEEeeec
Q psy11439 19 RFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 19 ~~a~~~~R~~~gP~lie~~tyR 40 (91)
..|++.+.+.+||+|||+.+-+
T Consensus 540 ~~al~~a~~~~gp~lIev~~~~ 561 (578)
T PRK06112 540 AQALAAAMAAPGPTLIEVITDP 561 (578)
T ss_pred HHHHHHHHhCCCCEEEEEEcCc
Confidence 4555566667999999999843
No 105
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=64.43 E-value=17 Score=27.01 Aligned_cols=31 Identities=13% Similarity=-0.012 Sum_probs=24.7
Q ss_pred EeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q psy11439 5 EVDGMDILAVREAARFAVNHCRSDKGPILLETATY 39 (91)
Q Consensus 5 ~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~ty 39 (91)
+++-.|+.++.+++++|.+ .+||.||++.+.
T Consensus 181 ~~~~~~~~~l~~~i~~A~~----~~Gps~I~v~sP 211 (299)
T PRK11865 181 TASIGYPEDFMEKVKKAKE----VEGPAYIQVLQP 211 (299)
T ss_pred EEeCCCHHHHHHHHHHHHh----CCCCEEEEEECC
Confidence 5566789998888888875 589999999653
No 106
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=64.15 E-value=20 Score=26.66 Aligned_cols=31 Identities=6% Similarity=-0.139 Sum_probs=25.8
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~t 38 (91)
.+++-.|+.++.+++++|++ .+||.||++.+
T Consensus 176 A~~~~~~~~~~~~~i~~A~~----~~Gps~I~~~s 206 (300)
T PRK11864 176 ATASIAYPEDFIRKLKKAKE----IRGFKFIHLLA 206 (300)
T ss_pred EEEeCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 36778899999998888885 68999999854
No 107
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=64.14 E-value=18 Score=25.59 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~t 38 (91)
.++.++..++++|++ +.+||+||++.+
T Consensus 176 ~~~~~l~~al~~al~---~~~GP~lI~v~i 202 (237)
T cd02018 176 ALKKHFLKVVKEAIS---RTDGPTFIHAYT 202 (237)
T ss_pred CCHHHHHHHHHHHHh---cCCCCEEEEEeC
Confidence 346666666666553 378999999986
No 108
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=63.12 E-value=17 Score=28.80 Aligned_cols=33 Identities=6% Similarity=0.178 Sum_probs=21.4
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
++.+| +++.++ ..|++.+++.+||+|||+.+-+
T Consensus 514 ~~~~v--~~~~~l----~~al~~a~~~~~p~liev~id~ 546 (570)
T PRK06725 514 KGLRA--TNSTEA----KQVMLEAFAHEGPVVVDFCVEE 546 (570)
T ss_pred eEEEe--CCHHHH----HHHHHHHHhCCCCEEEEEEeCC
Confidence 34444 355554 4555555567999999999843
No 109
>PF11268 DUF3071: Protein of unknown function (DUF3071); InterPro: IPR021421 Some members in this family of proteins are annotated as DNA-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=62.86 E-value=1.3 Score=30.39 Aligned_cols=28 Identities=36% Similarity=0.468 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCCEEEE
Q psy11439 8 GMDILAVREAARFAVNHCRSDKGPILLE 35 (91)
Q Consensus 8 G~D~~~v~~a~~~a~~~~R~~~gP~lie 35 (91)
|..+.+|.+.+...+++++.+.+|+|.|
T Consensus 69 Gas~eeVA~~~G~~~~rV~rfa~PVlaE 96 (170)
T PF11268_consen 69 GASAEEVAEEAGVPVERVRRFAGPVLAE 96 (170)
T ss_pred CCCHHHHHHHhCCCHHHhhhcccHHHHH
Confidence 8899999999999999999999999987
No 110
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=62.70 E-value=12 Score=29.50 Aligned_cols=29 Identities=14% Similarity=0.332 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
.++.++...+..|+..++.++ ||++|++=
T Consensus 139 ~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 168 (566)
T PRK07282 139 RETADIPRIITEAVHIATTGRPGPVVIDLP 168 (566)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEeCC
Confidence 367888899999999999985 99999883
No 111
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=62.67 E-value=19 Score=27.34 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=39.5
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCC
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSD 48 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D 48 (91)
|.+.+.-.|+.++|..+..|.+.+.+.+-|+++-..+| .+|+...
T Consensus 135 ~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~~~ 179 (376)
T PRK08659 135 PIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VGHMREK 179 (376)
T ss_pred CcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hhCCccc
Confidence 56778889999999999999999999999999999993 8887543
No 112
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=62.40 E-value=13 Score=29.70 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
.++..+..++..|+..+..++ ||++|++=
T Consensus 151 ~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP 180 (616)
T PRK07418 151 RDPSDMARIVAEAFHIASSGRPGPVLIDIP 180 (616)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCcEEEecc
Confidence 478889999999999999988 99999873
No 113
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=61.87 E-value=14 Score=29.23 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHHHHcc-CCCEEEEEe
Q psy11439 10 DILAVREAARFAVNHCRSD-KGPILLETA 37 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~-~gP~lie~~ 37 (91)
++..+..++..|+..++.+ .||++|++=
T Consensus 151 ~~~~~~~~l~~A~~~a~~~~~GPV~i~iP 179 (569)
T PRK08327 151 RGDQIGEVVARAIQIAMSEPKGPVYLTLP 179 (569)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCEEEECc
Confidence 5678888899999999987 699999984
No 114
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=61.84 E-value=12 Score=29.62 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
.++..+...+..|+..++.+. ||++|++=
T Consensus 143 ~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP 172 (570)
T PRK06725 143 RDVNQLSRIVQEAFYIAESGRPGPVLIDIP 172 (570)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCcEEEccc
Confidence 478889999999999999986 99999983
No 115
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=61.77 E-value=12 Score=29.86 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEE
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLET 36 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~ 36 (91)
+++..+...+..|++.++.+. ||++|++
T Consensus 140 ~~~~~i~~~l~~A~~~A~s~~~GPV~l~i 168 (595)
T PRK09107 140 KDVNDLARVIHEAFHVATSGRPGPVVVDI 168 (595)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCceEEEec
Confidence 578889999999999999995 9999988
No 116
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=61.75 E-value=14 Score=29.12 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
+++.++...+..|+..++.++ ||++|++=
T Consensus 134 ~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 163 (572)
T PRK06456 134 KRIDEIPQWIKNAFYIATTGRPGPVVIDIP 163 (572)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 578888999999999999986 99999983
No 117
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=61.28 E-value=23 Score=28.06 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~t 38 (91)
.++.++..+.++|++ + +.++|+|||+.+
T Consensus 504 ~~~~el~~al~~a~~-~-~~~~p~liev~i 531 (575)
T TIGR02720 504 NKIEQLPAVFEQAKA-I-KQGKPVLIDAKI 531 (575)
T ss_pred CCHHHHHHHHHHHHh-h-CCCCcEEEEEEe
Confidence 345666666666665 2 558999999987
No 118
>PRK07524 hypothetical protein; Provisional
Probab=61.02 E-value=16 Score=28.46 Aligned_cols=30 Identities=20% Similarity=0.118 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHHHHHcc-CCCEEEEEe
Q psy11439 8 GMDILAVREAARFAVNHCRSD-KGPILLETA 37 (91)
Q Consensus 8 G~D~~~v~~a~~~a~~~~R~~-~gP~lie~~ 37 (91)
=+++..+...+..|+..++.+ .||++|++=
T Consensus 132 v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (535)
T PRK07524 132 LMSAEDLPEVLARAFAVFDSARPRPVHIEIP 162 (535)
T ss_pred eCCHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 357888999999999999987 699999873
No 119
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=60.90 E-value=14 Score=28.88 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
+++..+...+..|+..++.++ ||++|++=
T Consensus 129 ~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 158 (548)
T PRK08978 129 QSLEELPEIMAEAFEIASSGRPGPVLVDIP 158 (548)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 478899999999999999985 99999883
No 120
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=60.90 E-value=15 Score=29.41 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEE
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLET 36 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~ 36 (91)
.++.++-..+++|++.+..++ ||++|++
T Consensus 130 ~~~~~ip~~i~~Af~~A~sgrpGpv~i~i 158 (550)
T COG0028 130 RSPEDIPEVVARAFRIALSGRPGPVVVDL 158 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 477889999999999999999 9999987
No 121
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=60.85 E-value=15 Score=28.91 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEE
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLET 36 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~ 36 (91)
+++..+...+..|++.++.++ ||++|++
T Consensus 142 ~~~~~~~~~i~~A~~~a~~~~~GPV~i~i 170 (564)
T PRK08155 142 RDIEELPQVISDAFRIAQSGRPGPVWIDI 170 (564)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 478899999999999999985 9999998
No 122
>PRK11269 glyoxylate carboligase; Provisional
Probab=60.80 E-value=15 Score=29.11 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
.++.++..++..|+..++.+. ||++|++=
T Consensus 134 ~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 163 (591)
T PRK11269 134 REPALVPRVFQQAFHLMRSGRPGPVLIDLP 163 (591)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 678889999999999999986 99999984
No 123
>PRK12474 hypothetical protein; Provisional
Probab=60.49 E-value=17 Score=28.35 Aligned_cols=28 Identities=25% Similarity=0.096 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEE
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLET 36 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~ 36 (91)
+++.++..+++.|+..+..+. ||++|++
T Consensus 134 ~~~~~~~~~i~rA~~~A~~~~~GPV~l~i 162 (518)
T PRK12474 134 ASAGAVDSDVARAVQAAQSAPGGIATLIM 162 (518)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 578888999999999999987 9999988
No 124
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=59.90 E-value=17 Score=28.91 Aligned_cols=28 Identities=21% Similarity=0.479 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEE
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLET 36 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~ 36 (91)
.++..+...+..|+..++.++ ||+.|++
T Consensus 150 ~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 178 (587)
T PRK06965 150 KDVRDLAETVKKAFYIARTGRPGPVVVDI 178 (587)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 477888899999999999984 9999998
No 125
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=59.73 E-value=17 Score=29.07 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
+++..+...+..|+..++.++ ||++|++=
T Consensus 160 ~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP 189 (612)
T PRK07789 160 TDADDIPRVIAEAFHIASTGRPGPVLVDIP 189 (612)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCceEEEEEc
Confidence 478889999999999999984 99999983
No 126
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=59.30 E-value=16 Score=28.88 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEE
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLET 36 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~ 36 (91)
.++..+...+..|+..++.++ ||++|++
T Consensus 133 ~~~~~~~~~l~~A~~~A~~~~~GPV~l~i 161 (572)
T PRK08979 133 KDAEDIPEIIKKAFYIASTGRPGPVVIDL 161 (572)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcEEEec
Confidence 367888889999999999986 9999997
No 127
>PF02211 NHase_beta: Nitrile hydratase beta subunit; InterPro: IPR024690 Nitrile hydratases (EC:4.2.1.84) are unusual metalloenzymes that catalyse the hydration of nitriles to their corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and they contain one iron atom per alpha beta unit []. This entry represents the structural domain of nitrile hydratase beta subunit which contains irregular array of helices in the N-terminal extension.; GO: 0018822 nitrile hydratase activity; PDB: 2DXB_H 2DD5_K 2DD4_H 2ZZD_B 2DXC_H 1AHJ_F 2ZPE_B 2ZCF_B 2D0Q_B 2CZ7_B ....
Probab=59.07 E-value=11 Score=26.77 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=16.9
Q ss_pred HHHHHHHHHcCCCCHHHHhh
Q psy11439 70 SSLKDKILNASLVTPEELKR 89 (91)
Q Consensus 70 ~~~~~~L~~~g~~~~~e~~~ 89 (91)
.-+.+.|++.|++|.+||++
T Consensus 74 ~ale~lLvekG~it~~EL~a 93 (222)
T PF02211_consen 74 AALEKLLVEKGVITAEELDA 93 (222)
T ss_dssp HHHHHHHHHTTSS-HHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHH
Confidence 45889999999999999986
No 128
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=58.81 E-value=17 Score=24.62 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETATY 39 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~ty 39 (91)
.++.++-+++ + +.+.+||.|||+.+-
T Consensus 131 ~~~~~l~~al----~-a~~~~~p~li~v~~~ 156 (181)
T TIGR03846 131 ADEEELRDAL----K-ALAMKGPTFIHVKVK 156 (181)
T ss_pred CCHHHHHHHH----H-HHcCCCCEEEEEEeC
Confidence 4455554444 3 445689999999884
No 129
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=58.79 E-value=21 Score=27.14 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=38.7
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCC
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSD 48 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D 48 (91)
+.+.+.-.|+.+++..+..|.+.+.+..-|+++-..+ ++ +|+...
T Consensus 134 ~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~-~l-sh~~~~ 178 (375)
T PRK09627 134 KSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE-TV-GHMYGK 178 (375)
T ss_pred CcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch-HH-hCCeee
Confidence 4567788999999999999999999999999999988 44 887543
No 130
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=58.57 E-value=18 Score=28.46 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
+++.++...+..|+..+..+. ||++|++=
T Consensus 137 ~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP 166 (557)
T PRK08199 137 DDAARIPELVSRAFHVATSGRPGPVVLALP 166 (557)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 688899999999999999985 99999873
No 131
>PRK07064 hypothetical protein; Provisional
Probab=58.57 E-value=19 Score=28.13 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHHHcc-CCCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSD-KGPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~-~gP~lie~~ 37 (91)
+++.++..++..|+..+..+ .||++|++=
T Consensus 135 ~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 164 (544)
T PRK07064 135 RSAETALATIREAVRVALTAPTGPVSVEIP 164 (544)
T ss_pred CCHHHHHHHHHHHHHHhccCCCCcEEEEeC
Confidence 46778888999999999998 799999984
No 132
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=58.35 E-value=25 Score=27.80 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
.++.++..++++|++.. +.++|+|||+.+-+
T Consensus 528 ~~~~el~~al~~a~~~~-~~~~p~lieV~v~~ 558 (579)
T TIGR03457 528 DKPEDVGPALKKAIAAQ-AEGKTTVIEIVCTR 558 (579)
T ss_pred CCHHHHHHHHHHHHhhC-CCCCcEEEEEEeCC
Confidence 45677777777777654 24789999999854
No 133
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=58.28 E-value=18 Score=28.43 Aligned_cols=29 Identities=17% Similarity=0.160 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
.++..+..++..|+..+....||++|++=
T Consensus 135 ~~~~~~~~~~~~A~~~a~~~~gPv~i~iP 163 (535)
T TIGR03394 135 DDPATAPAEIARVLGSARELSRPVYLEIP 163 (535)
T ss_pred CChHHhHHHHHHHHHHHHHCCCCEEEEec
Confidence 34566677788888888888999999984
No 134
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=58.12 E-value=18 Score=28.54 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEE
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLET 36 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~ 36 (91)
.++..+...+..|+..++.+. ||++|++
T Consensus 133 ~~~~~~~~~~~rA~~~A~~~~~GPV~l~i 161 (574)
T PRK06466 133 KHASEIPEIIKKAFYIAQSGRPGPVVVDI 161 (574)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 378888999999999999985 9999998
No 135
>COG4573 GatZ Predicted tagatose 6-phosphate kinase [Carbohydrate transport and metabolism]
Probab=57.65 E-value=11 Score=28.94 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=20.9
Q ss_pred HHHHHHHHHHccCCCEEEEEeeecC
Q psy11439 17 AARFAVNHCRSDKGPILLETATYRY 41 (91)
Q Consensus 17 a~~~a~~~~R~~~gP~lie~~tyR~ 41 (91)
+...|+.++++.+.|+|||+.|-..
T Consensus 29 ViEAAl~~a~~~~~~vLIEAT~NQV 53 (426)
T COG4573 29 VIEAALRFARASQTPVLIEATSNQV 53 (426)
T ss_pred HHHHHHHHHhccCCceEeecccccc
Confidence 4577899999999999999987443
No 136
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=57.45 E-value=21 Score=28.32 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
+++..+...+..|+..+...+||++|++=
T Consensus 129 ~~~~~~~~~i~~A~~~A~~~~GPV~l~iP 157 (575)
T TIGR02720 129 MTAESLPHVIDEAIRRAYAHNGVAVVTIP 157 (575)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 56788888899999998999999999984
No 137
>PRK08322 acetolactate synthase; Reviewed
Probab=57.27 E-value=18 Score=28.23 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
+++..+...+..|+..+..++ ||++|++=
T Consensus 129 ~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 158 (547)
T PRK08322 129 VSPDNIPEVVREAFRLAEEERPGAVHLELP 158 (547)
T ss_pred CCHHHHHHHHHHHHHHHccCCCCcEEEEcC
Confidence 578888999999999999985 99999983
No 138
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=57.19 E-value=19 Score=28.43 Aligned_cols=29 Identities=10% Similarity=0.304 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
+++.++...+..|+..+..++ ||++|++-
T Consensus 133 ~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (574)
T PRK06882 133 KNAEDIPSTIKKAFYIASTGRPGPVVIDIP 162 (574)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEecC
Confidence 477888889999999998874 99999984
No 139
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=56.73 E-value=23 Score=21.90 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
++......+-.-++.++..++|++|+|.
T Consensus 62 ~~~~~~~~~~~~i~~~~~~~~~vlVHC~ 89 (139)
T cd00127 62 DISKYFDEAVDFIDDAREKGGKVLVHCL 89 (139)
T ss_pred ChHHHHHHHHHHHHHHHhcCCcEEEECC
Confidence 3444455555566666777889999993
No 140
>PRK06154 hypothetical protein; Provisional
Probab=56.49 E-value=19 Score=28.58 Aligned_cols=29 Identities=31% Similarity=0.316 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHHHHcc-CCCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSD-KGPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~-~gP~lie~~ 37 (91)
.++..+...+..|+..++.+ .||++|++=
T Consensus 145 ~~~~~~~~~i~~A~~~A~s~~~GPV~l~iP 174 (565)
T PRK06154 145 TLPDEVPELMRRAFTRLRNGRPGPVVLELP 174 (565)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCceEEEecc
Confidence 57788889999999999997 599999884
No 141
>PRK08617 acetolactate synthase; Reviewed
Probab=56.06 E-value=19 Score=28.28 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
+++.++..++..|++.+..++ ||++|++=
T Consensus 133 ~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 162 (552)
T PRK08617 133 QDPDNLSEVLANAFRAAESGRPGAAFVSLP 162 (552)
T ss_pred CCHHHHHHHHHHHHHHHccCCCCcEEEeCh
Confidence 578889999999999999985 89999984
No 142
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=56.05 E-value=20 Score=28.17 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
+++.++...+..|++.+..++ ||+.|++-
T Consensus 133 ~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP 162 (554)
T TIGR03254 133 LRAEDIGIGIARAIRTAVSGRPGGVYLDLP 162 (554)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 367888889999999999875 89999984
No 143
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=55.78 E-value=30 Score=27.68 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
++.++-.++.. +.+.++|+|||+.+..
T Consensus 534 ~~~el~~al~~----a~~~~~p~lIeV~i~~ 560 (616)
T PRK07418 534 ERDQLKDAIAE----ALAHDGPVLIDVHVRR 560 (616)
T ss_pred CHHHHHHHHHH----HHhCCCCEEEEEEecC
Confidence 45555444444 4457889999999853
No 144
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=55.46 E-value=20 Score=28.27 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 8 GMDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 8 G~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
=.++..+...+..|+..++.++ ||+.|++=
T Consensus 143 v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 173 (571)
T PRK07710 143 VRKASDLPRIIKEAFHIATTGRPGPVLIDIP 173 (571)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 3567888899999999999985 99999984
No 145
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=55.21 E-value=21 Score=28.16 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
.++..+...+..|+..++.+. ||+.|++=
T Consensus 140 ~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 169 (578)
T PRK06112 140 TVAERIDDYVDQAFTAATSGRPGPVVLLLP 169 (578)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 568888999999999999985 99999984
No 146
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=55.16 E-value=22 Score=27.78 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
+++.++...+..|++.+..++ ||++|++=
T Consensus 127 ~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP 156 (539)
T TIGR02418 127 QDPDALSEVVANAFRAAESGKPGAAFVSLP 156 (539)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 578889999999999999885 89999883
No 147
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=54.88 E-value=23 Score=28.12 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
+++..+..++..|+..+....||++|++=
T Consensus 132 ~~~~~~~~~i~~A~~~A~~~~GPV~l~lP 160 (578)
T PRK06546 132 SSAEQAPRVLHSAIQHAVAGGGVSVVTLP 160 (578)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 45778888899999999988999999973
No 148
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=54.74 E-value=20 Score=28.39 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
+++..+..++..|+..+..++ ||+.|++=
T Consensus 129 ~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP 158 (586)
T PRK06276 129 KKPEEIPEIFRAAFEIAKTGRPGPVHIDLP 158 (586)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 467788889999999999885 99999984
No 149
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=54.73 E-value=21 Score=28.38 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
+++..+...+..|+..++.++ ||++|++=
T Consensus 142 ~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP 171 (585)
T CHL00099 142 RDARDISRIVAEAFYIAKHGRPGPVLIDIP 171 (585)
T ss_pred CCHHHHHHHHHHHHHHHccCCCCeEEEecC
Confidence 478889999999999999875 99999973
No 150
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=54.47 E-value=24 Score=27.90 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHHHHcc-CCCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSD-KGPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~-~gP~lie~~ 37 (91)
+++..+...+..|+..+..+ .||++|++=
T Consensus 140 ~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (569)
T PRK09259 140 NRAEDIGIGVARAIRTAVSGRPGGVYLDLP 169 (569)
T ss_pred CCHHHHHHHHHHHHHHhhhCCCCcEEEEeC
Confidence 46888889999999999987 499999984
No 151
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=54.45 E-value=31 Score=27.60 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=22.6
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecC
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 41 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~ 41 (91)
.+++|+ ++.++-. +++.+.+..+|+||++.+-+-
T Consensus 500 ~g~~v~--~~~el~~----al~~al~~~~p~lidv~id~~ 533 (550)
T COG0028 500 KGIRVE--TPEELEE----ALEEALASDGPVLIDVVVDPE 533 (550)
T ss_pred eeEEeC--CHHHHHH----HHHHHHhCCCCEEEEEEecCc
Confidence 344555 5555544 555555689999999988654
No 152
>PF02741 FTR_C: FTR, proximal lobe; InterPro: IPR002770 Formylmethanofuran:tetrahyromethanopterin formyltransferase (Ftr) is involved in C1 metabolism in methanogenic archaea, sulphate-reducing archaea and methylotrophic bacteria. It catalyses the following reversible reaction: N-formylmethanofuran + 5,6,7,8-tetrahydromethanopterin = methanofuran + 5-formyl-5,6,7,8-tetrahydromethanopterin Ftr from the thermophilic methanogen Methanopyrus kandleri (optimum growth temperature 98 degrees C) is a hyperthermophilic enzyme that is absolutely dependent on the presence of lyotropic salts for activity and thermostability. The crystal structure of Ftr, determined to a reveals a homotetramer composed essentially of two dimers. Each subunit is subdivided into two tightly associated lobes both consisting of a predominantly antiparallel beta sheet flanked by alpha helices forming an alpha/beta sandwich structure. The approximate location of the active site was detected in a region close to the dimer interface []. Ftr from the mesophilic methanogen Methanosarcina barkeri and the sulphate-reducing archaeon Archaeoglobus fulgidus have a similar structure []. In the methylotrophic bacterium Methylobacterium extorquens, Ftr interacts with three other polypeptides to form an Ftr/cyclohydrolase complex which catalyses the hydrolysis of formyl-tetrahydromethanopterin to formate during growth on C1 substrates [].; GO: 0016740 transferase activity, 0006730 one-carbon metabolic process; PDB: 1M5S_B 1M5H_E 1FTR_C 2FHJ_B 2FHK_D.
Probab=54.33 E-value=35 Score=23.02 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=25.9
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHccCCCEEE
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSDKGPILL 34 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~li 34 (91)
=+.+||.|..+|.+|++..++-+-...|=+-|
T Consensus 100 EIVIdGl~~~av~~Amr~Gi~Aa~~~~Gv~~I 131 (150)
T PF02741_consen 100 EIVIDGLSEEAVAEAMRAGIEAACAVPGVVRI 131 (150)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHTTSTTEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 47899999999999999999988855553333
No 153
>PF08608 Wyosine_form: Wyosine base formation; InterPro: IPR013917 The proteins in this entry appear to be important in wyosine base formation in a subset of phenylalanine specific tRNAs. It has been proposed that it participates in converting tRNA(Phe)-m(1)G(37) to tRNA(Phe)-yW []. ; PDB: 2YX0_A 2Z2U_A.
Probab=54.07 E-value=7.3 Score=22.29 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=7.4
Q ss_pred CCEEEEEeeecCCCCCC
Q psy11439 30 GPILLETATYRYSGHSM 46 (91)
Q Consensus 30 gP~lie~~tyR~~gHs~ 46 (91)
.|.|||++-|=+.|+|.
T Consensus 3 ~P~fVEvKa~~~~G~s~ 19 (62)
T PF08608_consen 3 EPDFVEVKAYMHVGYSR 19 (62)
T ss_dssp T-SEEEEEE--------
T ss_pred CCcEEEEecCccccccc
Confidence 49999999999999887
No 154
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=54.00 E-value=27 Score=25.66 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q psy11439 8 GMDILAVREAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 8 G~D~~~v~~a~~~a~~~~R~~~gP~lie~~t 38 (91)
-.++.++.+++++|+ +.+||.|||+.+
T Consensus 166 ~~~~~~l~~~i~~Al----~~~Gp~lIeV~~ 192 (280)
T PRK11869 166 SGDIEETKEILKEAI----KHKGLAIVDIFQ 192 (280)
T ss_pred CCCHHHHHHHHHHHH----hCCCCEEEEEEC
Confidence 456777766666666 468999999865
No 155
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=53.70 E-value=23 Score=27.78 Aligned_cols=29 Identities=14% Similarity=0.299 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
.++.++...+..|+..+..++ ||+.|++=
T Consensus 130 ~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP 159 (558)
T TIGR00118 130 KSAEDIPRIIKEAFHIATTGRPGPVLVDLP 159 (558)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Confidence 468888999999999999985 99999983
No 156
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=53.47 E-value=19 Score=26.33 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~t 38 (91)
.++.++-.++++| .+.+||+|||+.+
T Consensus 175 ~~~~el~~al~~A----l~~~Gp~lIeV~~ 200 (277)
T PRK09628 175 IDPQKLEKLLVKG----FSHKGFSFFDVFS 200 (277)
T ss_pred CCHHHHHHHHHHH----HhCCCCEEEEEcC
Confidence 4555555555555 4579999999965
No 157
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=53.05 E-value=25 Score=27.44 Aligned_cols=29 Identities=17% Similarity=0.167 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
.++..+...+..|+..++.++ ||++|++=
T Consensus 140 ~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 169 (530)
T PRK07092 140 ARAEDVPAAIARAYHIAMQPPRGPVFVSIP 169 (530)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCcEEEEcc
Confidence 567888889999999999986 89999984
No 158
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=52.71 E-value=20 Score=21.70 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCCCHHHHhhh
Q psy11439 69 ISSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 69 i~~~~~~L~~~g~~~~~e~~~~ 90 (91)
+..+-.+|+++|++|+++.+.+
T Consensus 16 v~~ild~L~~~gvlt~~~~e~I 37 (86)
T cd08323 16 TSYIMDHMISDGVLTLDEEEKV 37 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHH
Confidence 3446788999999999988764
No 159
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=52.47 E-value=25 Score=27.73 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHHHHcc-CCCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSD-KGPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~-~gP~lie~~ 37 (91)
.++..+..++..|+..++.+ .||+.|++=
T Consensus 136 ~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP 165 (561)
T PRK06048 136 QDAKDLPRIIKEAFHIASTGRPGPVLIDLP 165 (561)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEecC
Confidence 56788899999999999988 499999983
No 160
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=52.40 E-value=33 Score=27.08 Aligned_cols=31 Identities=6% Similarity=0.055 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
.++.++-.++++|++.++. ++|+|||+.+-+
T Consensus 519 ~~~~eL~~al~~a~~~~~~-~~p~lIeV~i~~ 549 (574)
T PRK07979 519 SHPDELESKLSEALEQVRN-NRLVFVDVTVDG 549 (574)
T ss_pred CCHHHHHHHHHHHHhccCC-CCcEEEEEEECC
Confidence 4567777777777765443 789999998853
No 161
>PRK08266 hypothetical protein; Provisional
Probab=52.24 E-value=27 Score=27.26 Aligned_cols=29 Identities=17% Similarity=0.072 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHHHHcc-CCCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSD-KGPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~-~gP~lie~~ 37 (91)
.++..+...+..|+..++.+ .||++|++=
T Consensus 137 ~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP 166 (542)
T PRK08266 137 EHPSEAPALVAEAFQQMLSGRPRPVALEMP 166 (542)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCCcEEEEeC
Confidence 45778888899999999886 599999984
No 162
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=52.13 E-value=40 Score=24.73 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=19.1
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q psy11439 7 DGMDILAVREAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 7 DG~D~~~v~~a~~~a~~~~R~~~gP~lie~~t 38 (91)
...++.++.+++++|+ +.+||.|||+..
T Consensus 164 ~~~~~~~l~~~l~~Al----~~~Gps~I~v~~ 191 (279)
T PRK11866 164 FSGDVKHLKEIIKEAI----KHKGFSFIDVLS 191 (279)
T ss_pred cCCCHHHHHHHHHHHH----hCCCCEEEEEeC
Confidence 3356666655555555 579999999854
No 163
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=51.97 E-value=49 Score=23.42 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=36.5
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCC
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSD 48 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D 48 (91)
+.+.+...|+.+++..+..|.+.+.+..-|+++-..+|+. .|+...
T Consensus 118 ~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~-sh~~e~ 163 (230)
T PF01855_consen 118 GWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC-SHSREP 163 (230)
T ss_dssp S-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC-TC-EEE
T ss_pred CeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh-cCcccc
Confidence 4567788999999999999999999999999999988875 476554
No 164
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=51.51 E-value=30 Score=27.29 Aligned_cols=28 Identities=7% Similarity=0.074 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEE
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLET 36 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~ 36 (91)
.++..+...+..|+..+...+||++|++
T Consensus 132 ~~~~~~~~~i~~A~~~A~~~~gPV~l~i 159 (574)
T PRK09124 132 SNPEQLPRVLAIAMRKAILNRGVAVVVL 159 (574)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 3677778888889999888899999997
No 165
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=49.27 E-value=76 Score=21.99 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=30.8
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHH
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEV 62 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~ 62 (91)
|.+.||||-. .-+..+.++-+..-+.|+=+.+ .||+++-++..
T Consensus 7 PVISVNGN~A---AL~p~eiveLa~~~~A~iEVNL---------------FyRT~eR~~~I 49 (178)
T PF02006_consen 7 PVISVNGNTA---ALVPEEIVELAKATGAKIEVNL---------------FYRTEERVEKI 49 (178)
T ss_pred CEEEEcccHH---HhChHHHHHHHHHhCCCEEEEc---------------ccCCHHHHHHH
Confidence 8899999854 3456778888888887755433 38988766544
No 166
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=48.17 E-value=47 Score=24.96 Aligned_cols=45 Identities=9% Similarity=0.123 Sum_probs=38.8
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCC
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSD 48 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D 48 (91)
+.+.++-.|+.++|..+..|.+.+.+.+-|+++-..+| .+|+...
T Consensus 135 ~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~~~ 179 (352)
T PRK07119 135 RLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQMMEP 179 (352)
T ss_pred ceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCceee
Confidence 46778889999999999999999999999999999984 4787543
No 167
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=48.13 E-value=27 Score=21.00 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=16.7
Q ss_pred HHHHHHHHHcCCCCHHHHhhh
Q psy11439 70 SSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 70 ~~~~~~L~~~g~~~~~e~~~~ 90 (91)
...-.+|+++|++|.++.+.+
T Consensus 19 ~~v~~~L~~~~Vlt~~~~e~I 39 (84)
T cd08326 19 KYLWDHLLSRGVFTPDMIEEI 39 (84)
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 346788999999999877654
No 168
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=47.35 E-value=30 Score=18.03 Aligned_cols=25 Identities=16% Similarity=0.070 Sum_probs=21.5
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHH
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHC 25 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~ 25 (91)
+|+....|.+..+..+-+++|+...
T Consensus 21 lpg~~t~G~t~eea~~~~~eal~~~ 45 (48)
T PF03681_consen 21 LPGCFTQGDTLEEALENAKEALELW 45 (48)
T ss_dssp CCTCEEEESSHHHHHHHHHHHHHHH
T ss_pred ccChhhcCCCHHHHHHHHHHHHHHH
Confidence 5778889999999999999998754
No 169
>KOG0523|consensus
Probab=46.07 E-value=48 Score=27.28 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=30.6
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCC
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSG 43 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~g 43 (91)
.++.|||.|+.++.+++.+|. -.-++|+.|-+.|+==+|
T Consensus 207 ~~~~V~~~d~d~i~ka~~~a~---~~k~kpt~i~~~t~~g~G 245 (632)
T KOG0523|consen 207 NVIIVDGGDVDEIRKAIGKAK---SVKGKPTAIKATTFIGRG 245 (632)
T ss_pred eEEEEcCcCHHHHHHHHhhhh---hccCCceeeeeeeeeecC
Confidence 467899999888888888876 345779999999976443
No 170
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=45.97 E-value=31 Score=27.19 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=16.6
Q ss_pred HHHHHHHHccCCCEEEEEeeec
Q psy11439 19 RFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 19 ~~a~~~~R~~~gP~lie~~tyR 40 (91)
..|++.+.+.+||+|||+.+.+
T Consensus 518 ~~al~~a~~~~~p~lieV~v~~ 539 (563)
T PRK08527 518 DKALKEALESDKVALIDVKIDR 539 (563)
T ss_pred HHHHHHHHhCCCCEEEEEEECC
Confidence 3455555567899999999976
No 171
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=45.86 E-value=29 Score=26.60 Aligned_cols=27 Identities=22% Similarity=0.071 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETATY 39 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~ty 39 (91)
.++..+.+++++|.+ .+||.||++.+.
T Consensus 241 ~~~~~~~~~i~eA~~----~~Gps~I~v~sP 267 (365)
T cd03377 241 ANDNQTLKAFREAEA----YDGPSLIIAYSP 267 (365)
T ss_pred cCHHHHHHHHHHHhc----CCCCEEEEEEcc
Confidence 578888888888875 599999999763
No 172
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=45.80 E-value=27 Score=21.53 Aligned_cols=21 Identities=5% Similarity=0.139 Sum_probs=16.6
Q ss_pred HHHHHHHHHcCCCCHHHHhhh
Q psy11439 70 SSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 70 ~~~~~~L~~~g~~~~~e~~~~ 90 (91)
..+..+|+++|++|+++.+.+
T Consensus 24 ~~v~~~L~~~gIlT~~~~e~I 44 (94)
T cd08327 24 GLVIQYLYQEGILTESHVEEI 44 (94)
T ss_pred HHHHHHHHhCCCCCHHHHHHH
Confidence 346677999999999887654
No 173
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=45.47 E-value=45 Score=24.58 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=32.4
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
.+.+|++++.++...+..|++.+++.+-++.+.....|
T Consensus 201 ~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~ 238 (321)
T TIGR03822 201 YVALHANHARELTAEARAACARLIDAGIPMVSQSVLLR 238 (321)
T ss_pred EEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeC
Confidence 46789999999899999999999998888877776655
No 174
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=45.26 E-value=50 Score=26.44 Aligned_cols=43 Identities=14% Similarity=0.020 Sum_probs=37.8
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCC
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 46 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~ 46 (91)
|.+.+.-.|+.++|..+..|.+.+.+..-|+++-...|. +|+.
T Consensus 324 ~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l--~~~~ 366 (562)
T TIGR03710 324 PRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYL--ANSY 366 (562)
T ss_pred CceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHH--hCCc
Confidence 567788899999999999999999999999999999984 5543
No 175
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=44.78 E-value=28 Score=23.20 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=17.8
Q ss_pred HHHHHHHHHHc-CCCCHHHHhh
Q psy11439 69 ISSLKDKILNA-SLVTPEELKR 89 (91)
Q Consensus 69 i~~~~~~L~~~-g~~~~~e~~~ 89 (91)
++.+++.++++ +++|++|..+
T Consensus 24 i~~~~~~~V~~~~wlt~~~f~~ 45 (169)
T PF02417_consen 24 IPLIQREFVERRGWLTEEEFLE 45 (169)
T ss_pred HHHHHHHHhHccCCCCHHHHHH
Confidence 67788999985 9999999865
No 176
>PRK07586 hypothetical protein; Validated
Probab=44.68 E-value=31 Score=26.72 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=14.8
Q ss_pred HHHHHHHHccCCCEEEEEee
Q psy11439 19 RFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 19 ~~a~~~~R~~~gP~lie~~t 38 (91)
..|++.+.+.+||.|||+.+
T Consensus 495 ~~al~~a~~~~~p~liev~~ 514 (514)
T PRK07586 495 ADALAAALAEPGPHLIEAVV 514 (514)
T ss_pred HHHHHHHHcCCCCEEEEEEC
Confidence 45566666678999999863
No 177
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=44.53 E-value=36 Score=20.11 Aligned_cols=23 Identities=13% Similarity=0.469 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHcCCCCHHHHhhh
Q psy11439 68 PISSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 68 Pi~~~~~~L~~~g~~~~~e~~~~ 90 (91)
|+.+-.-.|+++|+.|.+++|..
T Consensus 10 ~~~~ea~~l~~egvas~~~ID~~ 32 (97)
T PF00725_consen 10 ALLNEAARLVEEGVASPEDIDRA 32 (97)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHH
Confidence 44555667899999999999875
No 178
>PRK07064 hypothetical protein; Provisional
Probab=44.50 E-value=33 Score=26.80 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETATY 39 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~ty 39 (91)
.+.++..++++| .+.+||+|||+.++
T Consensus 503 ~~~eL~~al~~a----~~~~~p~lIeV~~~ 528 (544)
T PRK07064 503 SADDFEAVLREA----LAKEGPVLVEVDML 528 (544)
T ss_pred CHHHHHHHHHHH----HcCCCCEEEEEEcc
Confidence 455555555554 45689999999986
No 179
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=44.31 E-value=34 Score=25.09 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~t 38 (91)
.++.++..++++|+ +.+||+|||+.+
T Consensus 176 ~~~~el~~al~~Al----~~~Gp~lIev~~ 201 (286)
T PRK11867 176 SDVKQLTELIKAAI----NHKGFSFVEILQ 201 (286)
T ss_pred CCHHHHHHHHHHHH----hCCCCEEEEEeC
Confidence 35666655555555 568999999854
No 180
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=44.31 E-value=21 Score=19.38 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=13.9
Q ss_pred CCCHHHHHHHHhCCChHH
Q psy11439 53 YRTRDEIQEVRQTRDPIS 70 (91)
Q Consensus 53 Yr~~~e~~~~~~~~DPi~ 70 (91)
||+.+|+..|.. -++-.
T Consensus 21 ~RT~dEI~~W~~-~s~~e 37 (51)
T PF06945_consen 21 GRTLDEIRDWKS-MSDDE 37 (51)
T ss_pred CCcHHHHHHHhh-CCHHH
Confidence 999999999984 56654
No 181
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=44.13 E-value=52 Score=26.30 Aligned_cols=28 Identities=7% Similarity=0.112 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
.++.++-.++++|. +.+||+|||+.+-+
T Consensus 528 ~~~~el~~al~~a~----~~~~p~lIeV~i~~ 555 (595)
T PRK09107 528 EKPGDLDDAIQEMI----DVDKPVIFDCRVAN 555 (595)
T ss_pred CCHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 34555555555444 46899999999864
No 182
>smart00114 CARD Caspase recruitment domain. Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.
Probab=43.93 E-value=23 Score=20.94 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=15.7
Q ss_pred HHHHHHHcCCCCHHHHhhh
Q psy11439 72 LKDKILNASLVTPEELKRE 90 (91)
Q Consensus 72 ~~~~L~~~g~~~~~e~~~~ 90 (91)
+-.+|+++|++|+++.+.+
T Consensus 25 vld~L~~~~Vlt~~e~e~i 43 (88)
T smart00114 25 LLDYLVEKNVLTEKEIEAI 43 (88)
T ss_pred HHHHHHHcCCCCHHHHHHH
Confidence 5567999999999988764
No 183
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=43.77 E-value=47 Score=19.52 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=20.8
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHccCCCEEE
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSDKGPILL 34 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~li 34 (91)
.+-++|+++.+...+...|.. .+.|+|+
T Consensus 28 v~ia~g~~~~Dalsa~~~a~~----~~~PIll 55 (92)
T PF04122_consen 28 VYIASGDNFADALSASPLAAK----NNAPILL 55 (92)
T ss_pred EEEEeCcchhhhhhhHHHHHh----cCCeEEE
Confidence 467889887776666666553 7889998
No 184
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=43.65 E-value=32 Score=22.50 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHccCCCEEEEEe
Q psy11439 15 REAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 15 ~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
..+++.+++.+.+..+|+|++|.
T Consensus 110 ~~~~~~~~~~l~~~~~p~l~HC~ 132 (164)
T PF13350_consen 110 AEAYRKIFELLADAPGPVLFHCT 132 (164)
T ss_dssp HHHHHHHHHHHH-TT--EEEE-S
T ss_pred hHHHHHHHHHhccCCCcEEEECC
Confidence 35667778888877799999994
No 185
>PRK08611 pyruvate oxidase; Provisional
Probab=43.62 E-value=35 Score=27.05 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=16.5
Q ss_pred HHHHHHHHccCCCEEEEEeeec
Q psy11439 19 RFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 19 ~~a~~~~R~~~gP~lie~~tyR 40 (91)
..|++.+.+.+||++||+.+.+
T Consensus 510 ~~al~~a~~~~~p~lIeV~vd~ 531 (576)
T PRK08611 510 DPAFEEALAQDKPVIIDVYVDP 531 (576)
T ss_pred HHHHHHHHhCCCCEEEEEEeCC
Confidence 4555555667999999999865
No 186
>PF05186 Dpy-30: Dpy-30 motif; InterPro: IPR007858 This motif is about 40 residues long and is probably formed of two alpha-helices. It is found in the Dpy-30 proteins, hence the motifs name. Dpy-30 from Caenorhabditis elegans is an essential component of dosage compensation machinery and loss of dpy-30 activity results in XX-specific lethality; in XO animals, Dpy-30 is required for developmental processes other than dosage compensation []. In yeast, the homologue of DPY-30, Saf19p, functions as part of the Set1 complex that is necessary for the methylation of histone H3 at lysine residue 4; Set1 is a key part of epigenetic developmental control []. There is also a human homologue of Dpy-30 []. This Dpy-30 region may be a dimerisation motif analogous that found in the cAMP-dependent protein kinase regulator, type II PKA, R subunit IPR003117 from INTERPRO.; PDB: 3G36_D.
Probab=43.61 E-value=37 Score=17.78 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=14.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHc
Q psy11439 58 EIQEVRQTRDPISSLKDKILNA 79 (91)
Q Consensus 58 e~~~~~~~~DPi~~~~~~L~~~ 79 (91)
++..-+ -.|||..+..+|++.
T Consensus 20 ~l~~~r-P~DPi~~La~~Ll~~ 40 (42)
T PF05186_consen 20 ELAKER-PEDPIEFLAEYLLKH 40 (42)
T ss_dssp HHHHH---SSHHHHHHHHHHHH
T ss_pred HHHHHC-CCChHHHHHHHHHHh
Confidence 333334 479999999999874
No 187
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=43.58 E-value=19 Score=28.13 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHccCCCEEEEEee
Q psy11439 16 EAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 16 ~a~~~a~~~~R~~~gP~lie~~t 38 (91)
.+++.|++++++.+.|+|||+.+
T Consensus 28 ~VieAAl~~a~~~~~pvLiEAT~ 50 (424)
T PF08013_consen 28 LVIEAALERAKEDDSPVLIEATS 50 (424)
T ss_dssp HHHHHHHHHCCCS-S-EEEEEET
T ss_pred HHHHHHHHHHHhcCCeEEEEecc
Confidence 35678899999999999999975
No 188
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=43.54 E-value=36 Score=26.70 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=16.1
Q ss_pred HHHHHHHHccCCCEEEEEeeec
Q psy11439 19 RFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 19 ~~a~~~~R~~~gP~lie~~tyR 40 (91)
+.|++.+.+.++|.|||+.+-+
T Consensus 505 ~~al~~a~~~~~p~lIeV~id~ 526 (548)
T PRK08978 505 EAALDTLLNSEGPYLLHVSIDE 526 (548)
T ss_pred HHHHHHHHhCCCCEEEEEEecC
Confidence 4455555567899999999854
No 189
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=43.41 E-value=36 Score=20.58 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=16.3
Q ss_pred HHHHHHHHcCCCCHHHHhhh
Q psy11439 71 SLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 71 ~~~~~L~~~g~~~~~e~~~~ 90 (91)
..-.+|+++|++|+++.+.+
T Consensus 24 ~v~~~L~~~gvlt~~~~~~I 43 (90)
T cd08332 24 ELLIHLLQKDILTDSMAESI 43 (90)
T ss_pred HHHHHHHHcCCCCHHHHHHH
Confidence 36778999999999887654
No 190
>PRK08322 acetolactate synthase; Reviewed
Probab=43.22 E-value=37 Score=26.52 Aligned_cols=27 Identities=7% Similarity=-0.033 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
++.++..++++| .+.+||.|||+.+-+
T Consensus 503 ~~~eL~~al~~a----~~~~~p~lIev~v~~ 529 (547)
T PRK08322 503 SADDLLPTLEEA----LAQPGVHVIDCPVDY 529 (547)
T ss_pred CHHHHHHHHHHH----HhCCCCEEEEEEecC
Confidence 455555555555 456899999998843
No 191
>PRK08617 acetolactate synthase; Reviewed
Probab=43.11 E-value=37 Score=26.64 Aligned_cols=22 Identities=9% Similarity=0.286 Sum_probs=16.1
Q ss_pred HHHHHHHHccCCCEEEEEeeec
Q psy11439 19 RFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 19 ~~a~~~~R~~~gP~lie~~tyR 40 (91)
..|++.+.+.++|+|||+.+-+
T Consensus 516 ~~al~~a~~~~~p~liev~~~~ 537 (552)
T PRK08617 516 EPVLREALATDGPVVIDIPVDY 537 (552)
T ss_pred HHHHHHHHhCCCcEEEEEEecc
Confidence 4555555567899999999854
No 192
>PRK05858 hypothetical protein; Provisional
Probab=42.60 E-value=37 Score=26.61 Aligned_cols=25 Identities=16% Similarity=0.022 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHccCCCEEEEEeee
Q psy11439 11 ILAVREAARFAVNHCRSDKGPILLETATY 39 (91)
Q Consensus 11 ~~~v~~a~~~a~~~~R~~~gP~lie~~ty 39 (91)
+.++..+.++ +.+.+||+|||+.|-
T Consensus 506 ~~eL~~al~~----a~~~~~p~lIev~~~ 530 (542)
T PRK05858 506 PAELGPALER----AFASGVPYLVNVLTD 530 (542)
T ss_pred HHHHHHHHHH----HHhCCCcEEEEEEEC
Confidence 4444444444 445789999999983
No 193
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=42.13 E-value=38 Score=26.55 Aligned_cols=26 Identities=8% Similarity=0.050 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 12 LAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 12 ~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
..+...+..|+..+..++||++|++=
T Consensus 139 ~~~~~~i~~a~~~A~~~~gPv~l~iP 164 (539)
T TIGR03393 139 QNATAEIDRVITTALRERRPGYLMLP 164 (539)
T ss_pred hhhHHHHHHHHHHHHhcCCCEEEEec
Confidence 33445566666666667899999983
No 194
>cd01204 IRS_PTB Insulin receptor substrate (IRS) Phosphotyrosine-binding domain(PTB). Insulin receptor substrate (IRS) Phosphotyrosine-binding domain(PTB). This domain has a PH-like fold and is found in insulin receptor substrate molecules. IRS molecules have an N-terminal PH domain , which is followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs in the insulin receptor, IGF-I receptor and the IL-4 receptor.
Probab=42.03 E-value=22 Score=22.50 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=13.3
Q ss_pred CEEEEEeeecCCCCCCC
Q psy11439 31 PILLETATYRYSGHSMS 47 (91)
Q Consensus 31 P~lie~~tyR~~gHs~~ 47 (91)
++.+-+.+-|.+||+.+
T Consensus 44 ~v~l~L~~IRRCGHs~~ 60 (104)
T cd01204 44 SVELLLMNIRRCGHSEN 60 (104)
T ss_pred cEEEeeeeeeeccCccc
Confidence 45577789999999863
No 195
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=41.75 E-value=31 Score=27.05 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=18.9
Q ss_pred HHHHHHHHHHccCCCEEEEEee
Q psy11439 17 AARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 17 a~~~a~~~~R~~~gP~lie~~t 38 (91)
+++.|++++++.+.|+|||+.+
T Consensus 29 VieAAl~~a~~~~~pvLiEAT~ 50 (426)
T PRK15458 29 VLEAAIRYALANDSPLLIEATS 50 (426)
T ss_pred HHHHHHHHHhhcCCcEEEEecc
Confidence 4567788999999999999975
No 196
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=41.63 E-value=40 Score=26.57 Aligned_cols=22 Identities=5% Similarity=0.146 Sum_probs=16.6
Q ss_pred HHHHHHHHccCCCEEEEEeeec
Q psy11439 19 RFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 19 ~~a~~~~R~~~gP~lie~~tyR 40 (91)
..|++.+.+.+||+|||+.+-+
T Consensus 525 ~~al~~a~~~~~p~lIev~v~~ 546 (572)
T PRK06456 525 EKSLKSAIKEDIPAVIRVPVDK 546 (572)
T ss_pred HHHHHHHHhCCCCEEEEEEeCc
Confidence 4555555567899999999865
No 197
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=41.57 E-value=24 Score=22.94 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=14.9
Q ss_pred CChHHHHHHHHHHcCCCCHHHHhhh
Q psy11439 66 RDPISSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 66 ~DPi~~~~~~L~~~g~~~~~e~~~~ 90 (91)
.-|+..=...|..+| +|++||++.
T Consensus 20 ~sp~~~k~~FL~sKG-Lt~~EI~~a 43 (136)
T PF04695_consen 20 NSPLEKKIAFLESKG-LTEEEIDEA 43 (136)
T ss_dssp CS-HHHHHHHHHHCT---HHHHHHH
T ss_pred cCCHHHHHHHHHcCC-CCHHHHHHH
Confidence 345555566777776 799999875
No 198
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=41.36 E-value=41 Score=26.30 Aligned_cols=22 Identities=9% Similarity=0.252 Sum_probs=15.6
Q ss_pred HHHHHHHHccCCCEEEEEeeec
Q psy11439 19 RFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 19 ~~a~~~~R~~~gP~lie~~tyR 40 (91)
..|++.+.+.+||+|||+.+-+
T Consensus 510 ~~al~~a~~~~~p~lIev~v~~ 531 (539)
T TIGR02418 510 EPTLRQAMEVEGPVVVDIPVDY 531 (539)
T ss_pred HHHHHHHHhCCCCEEEEEEecC
Confidence 3444445557899999999854
No 199
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=41.23 E-value=40 Score=26.53 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
++.++.. |++.+.+.++|+|||+.+-+
T Consensus 518 ~~~el~~----al~~a~~~~~p~lIeV~~~~ 544 (564)
T PRK08155 518 NEADPQA----ALQEAINRPGPALIHVRIDA 544 (564)
T ss_pred CHHHHHH----HHHHHHhCCCCEEEEEEeCC
Confidence 3455544 44555557899999999843
No 200
>PF02979 NHase_alpha: Nitrile hydratase, alpha chain; InterPro: IPR004232 Nitrile hydratases (4.2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site [, ]. The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide [, ]. Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols. Thiocyanate hydrolase (SCNase) is a cobalt-containing metalloenzyme with a cysteine-sulphinic acid ligand that hydrolyses thiocyanate to carbonyl sulphide and ammonia []. The two enzymes, nitrile hydratase and SCNase, are homologous over regions corresponding to almost the entire coding regions of the genes: the beta and alpha subunits of thiocyanate hydrolase were homologous to the amino- and carboxyl-terminal halves of the beta subunit of nitrile hydratase, and the gamma subunit of thiocyanate hydrolase was homologous to the alpha subunit of nitrile hydratase []. This entry represents the structural domain of the alpha subunit of both iron- and cobalt-containing nitrile hydratases; the alpha subunit is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha []. This structure is also found in the related protein, the gamma subunit of thiocyanate hydrolase (SCNase).; GO: 0003824 catalytic activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process; PDB: 2DPP_A 3HHT_A 1V29_A 2ZZD_I 2DXC_F 2DXB_F 2DD5_C 2DD4_C 2ZPH_A 2CYZ_A ....
Probab=41.04 E-value=26 Score=24.48 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCCCCHHHHhhh
Q psy11439 70 SSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 70 ~~~~~~L~~~g~~~~~e~~~~ 90 (91)
..++.-|+++|+++.+++++.
T Consensus 10 ~al~~ll~ekg~~~~~~~~~~ 30 (188)
T PF02979_consen 10 RALESLLIEKGLITPAEVDRI 30 (188)
T ss_dssp HHHHHHHHHTTSS-HHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHH
Confidence 458889999999999998864
No 201
>PF12345 DUF3641: Protein of unknown function (DUF3641) ; InterPro: IPR024521 This domain is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. It is found in association with an N-terminal radical_SAM domain (Pfam:PF04055 from PFAM).
Probab=40.96 E-value=16 Score=24.24 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=15.7
Q ss_pred CChHHHHHHHHHHcCCCC
Q psy11439 66 RDPISSLKDKILNASLVT 83 (91)
Q Consensus 66 ~DPi~~~~~~L~~~g~~~ 83 (91)
.=||.||++.|..+|-+.
T Consensus 32 NmPI~RF~~~L~~~g~~~ 49 (134)
T PF12345_consen 32 NMPIGRFGSFLERSGNLE 49 (134)
T ss_pred cCcHHHHHHHHHHccCHH
Confidence 689999999999998654
No 202
>PHA02591 hypothetical protein; Provisional
Probab=40.91 E-value=46 Score=20.20 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=17.1
Q ss_pred CChHHHHHHHHHHcCCCCHHHHhhhC
Q psy11439 66 RDPISSLKDKILNASLVTPEELKREL 91 (91)
Q Consensus 66 ~DPi~~~~~~L~~~g~~~~~e~~~~~ 91 (91)
.|-+..+...|.+.| +|.+++...|
T Consensus 45 ~dd~~~vA~eL~eqG-lSqeqIA~~L 69 (83)
T PHA02591 45 EDDLISVTHELARKG-FTVEKIASLL 69 (83)
T ss_pred cchHHHHHHHHHHcC-CCHHHHHHHh
Confidence 455555666788887 6888877653
No 203
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=40.89 E-value=69 Score=25.27 Aligned_cols=28 Identities=7% Similarity=0.009 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
++.++-.++.+|++. .++|+|||+.+-+
T Consensus 520 ~~~eL~~al~~a~~~---~~~p~liev~i~~ 547 (574)
T PRK06882 520 TPDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred CHHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence 344444444444432 3789999999854
No 204
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=40.79 E-value=43 Score=19.19 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCCCCHHHHhhh
Q psy11439 69 ISSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 69 i~~~~~~L~~~g~~~~~e~~~~ 90 (91)
+...-..|++.|++|+++.+.+
T Consensus 18 ~~~ild~L~~~~vlt~~e~e~I 39 (85)
T PF00619_consen 18 LDDILDHLLSRGVLTEEEYEEI 39 (85)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHH
Confidence 4445677999999999998764
No 205
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=40.75 E-value=39 Score=26.48 Aligned_cols=25 Identities=8% Similarity=0.167 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEee
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~t 38 (91)
++.++.. |++.+.+.+||+|||+.+
T Consensus 502 ~~~el~~----al~~a~~~~~p~liev~i 526 (539)
T TIGR03393 502 EAEQLAD----VLEKVAAHERLSLIEVVL 526 (539)
T ss_pred cHHHHHH----HHHHHhccCCeEEEEEEc
Confidence 3445544 444555678999999987
No 206
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=40.74 E-value=97 Score=23.40 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCC
Q psy11439 13 AVREAARFAVNHCRSDKGPILLETATYRYSGHSMSD 48 (91)
Q Consensus 13 ~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D 48 (91)
...+-+....+.|++.+-|+|+|+.+|...+....+
T Consensus 140 ~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~ 175 (340)
T PRK12858 140 RKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKA 175 (340)
T ss_pred HHHHHHHHHHHHHHHcCCceEEEEeccCCCcccccc
Confidence 455567888899999999999999999887655433
No 207
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=40.57 E-value=19 Score=22.25 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 11 ILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 11 ~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
.......+...++.++..+++++|+|.
T Consensus 55 ~~~~~~~~~~~i~~~~~~~~~VlVHC~ 81 (133)
T PF00782_consen 55 ILEHLDQAVEFIENAISEGGKVLVHCK 81 (133)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEEEES
T ss_pred hHHHHHHHHHhhhhhhcccceeEEEeC
Confidence 344455556677777788899999994
No 208
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=40.07 E-value=72 Score=25.51 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
++.++-.++++|++. .+||+|||+.+-+
T Consensus 550 ~~~eL~~al~~a~~~---~~~p~lIev~i~~ 577 (612)
T PRK07789 550 REEDVDAVIEKARAI---NDRPVVIDFVVGK 577 (612)
T ss_pred CHHHHHHHHHHHHhc---CCCcEEEEEEECC
Confidence 345555555555432 3789999999854
No 209
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=39.68 E-value=46 Score=25.35 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 13 AVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 13 ~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
.+...+..|+..+..++ ||++|++=
T Consensus 139 ~~~~~i~~A~~~a~~~~~GPV~l~iP 164 (432)
T TIGR00173 139 YLRSTVDRAVAQAQGPPPGPVHINVP 164 (432)
T ss_pred HHHHHHHHHHHHhhCCCCCCEEEeCC
Confidence 36778889999998866 99999983
No 210
>PRK13761 hypothetical protein; Provisional
Probab=39.13 E-value=1.2e+02 Score=22.03 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=30.3
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHH
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEV 62 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~ 62 (91)
|.+.||||-. .-+..+.++-+..-+.| ||+.. .||+++-++..
T Consensus 70 PVISVNGN~A---AL~p~eiveLa~~~~A~--iEVNL-------------F~RT~eR~~~I 112 (248)
T PRK13761 70 PVISVNGNTA---ALVPEEIVELAEALNAK--LEVNL-------------FYRTEERVEKI 112 (248)
T ss_pred CeEEEcchHH---hhChHHHHHHHHHhCCC--EEEEe-------------ccCCHHHHHHH
Confidence 7899999854 34566777888888887 45533 38888766554
No 211
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=39.03 E-value=36 Score=26.63 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=18.8
Q ss_pred HHHHHHHHHHccCCCEEEEEee
Q psy11439 17 AARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 17 a~~~a~~~~R~~~gP~lie~~t 38 (91)
+++.|++++++.+.|+|||+.+
T Consensus 25 VieAAl~~a~~~~~pvLiEAT~ 46 (420)
T TIGR02810 25 VLEAAIRRARASGTPVLIEATS 46 (420)
T ss_pred HHHHHHHHHhhcCCcEEEEecc
Confidence 5567788999999999999965
No 212
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=39.00 E-value=46 Score=18.84 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHcCCCCHHHHhhh
Q psy11439 68 PISSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 68 Pi~~~~~~L~~~g~~~~~e~~~~ 90 (91)
++..+-..|+++|++|.++.+.+
T Consensus 14 ~~~~il~~L~~~~vlt~~e~~~i 36 (80)
T cd01671 14 DVEDVLDHLLSDGVLTEEEYEKI 36 (80)
T ss_pred cHHHHHHHHHHcCCCCHHHHHHH
Confidence 55556678999999999987654
No 213
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=38.89 E-value=49 Score=26.38 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=16.3
Q ss_pred HHHHHHHHccCCCEEEEEeeecC
Q psy11439 19 RFAVNHCRSDKGPILLETATYRY 41 (91)
Q Consensus 19 ~~a~~~~R~~~gP~lie~~tyR~ 41 (91)
..|++.+.+.+||+|||+.+-+.
T Consensus 526 ~~al~~a~~~~~p~lIeV~~~~~ 548 (597)
T PRK08273 526 GAAWDEALAADRPVVLEVKTDPN 548 (597)
T ss_pred HHHHHHHHhCCCCEEEEEEeCCC
Confidence 34455555578999999998553
No 214
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=38.38 E-value=46 Score=20.31 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCCCHHHHhhh
Q psy11439 69 ISSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 69 i~~~~~~L~~~g~~~~~e~~~~ 90 (91)
+..+=+.|++.|++|+++.+.+
T Consensus 25 v~~ilD~Ll~~~Vlt~ee~e~I 46 (94)
T cd08329 25 VLPILDSLLSANVITEQEYDVI 46 (94)
T ss_pred hHHHHHHHHHcCCCCHHHHHHH
Confidence 3444567999999999988764
No 215
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=38.35 E-value=48 Score=26.05 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
++.++..++++ +.+.+||+|||+.+-+
T Consensus 494 ~~~el~~al~~----a~~~~~p~lIeV~i~~ 520 (549)
T PRK06457 494 EPKEAEEIIEE----FLNTKGPAVLDAIVDP 520 (549)
T ss_pred CHHHHHHHHHH----HHhCCCCEEEEEEeCc
Confidence 45555555554 4457899999999853
No 216
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=38.30 E-value=1.8e+02 Score=22.20 Aligned_cols=60 Identities=12% Similarity=0.006 Sum_probs=44.1
Q ss_pred ceEEeeCC---------CHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCC-----CC---------CCCCCCHHH
Q psy11439 2 ENKEVDGM---------DILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS-----DP---------GTSYRTRDE 58 (91)
Q Consensus 2 ~~~~vDG~---------D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~-----D~---------~~~Yr~~~e 58 (91)
.++-+||. ++.+-.+.+++.+++|+..+- -||+..=++.|-..+ |. ...|.+|+|
T Consensus 98 tSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv--sVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~Pee 175 (347)
T TIGR01521 98 TSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGA--SVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEE 175 (347)
T ss_pred CEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCC--eEEEEeeecccccccccccccCcccccccchhhcCCCHHH
Confidence 46778887 789999999999999999765 578877777544210 11 134999999
Q ss_pred HHHHH
Q psy11439 59 IQEVR 63 (91)
Q Consensus 59 ~~~~~ 63 (91)
...+-
T Consensus 176 A~~Fv 180 (347)
T TIGR01521 176 AADFV 180 (347)
T ss_pred HHHHH
Confidence 88774
No 217
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=38.02 E-value=52 Score=24.25 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~t 38 (91)
.++.++.+++++|+ +.+||.||++.+
T Consensus 160 ~~~~eL~~ai~~Al----~~~GpslIeV~~ 185 (287)
T TIGR02177 160 GDVAHLKEIIKEAI----NHKGYALVDILQ 185 (287)
T ss_pred CCHHHHHHHHHHHH----hCCCCEEEEEeC
Confidence 56666666666665 579999999864
No 218
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=37.96 E-value=42 Score=17.99 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCCCCHHHHhh
Q psy11439 69 ISSLKDKILNASLVTPEELKR 89 (91)
Q Consensus 69 i~~~~~~L~~~g~~~~~e~~~ 89 (91)
+..|+..|.+.|+ +++++++
T Consensus 13 ~~elrd~LEe~g~-~~eeIe~ 32 (46)
T PF08312_consen 13 CLELRDELEEQGY-SEEEIEE 32 (46)
T ss_dssp HHHHHHHHHHHT---HHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHH
Confidence 3458889999987 8888875
No 219
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=37.94 E-value=52 Score=25.93 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=15.8
Q ss_pred HHHHHHHHccCCCEEEEEeeec
Q psy11439 19 RFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 19 ~~a~~~~R~~~gP~lie~~tyR 40 (91)
..|++.+.+.+||+|||+.+-+
T Consensus 518 ~~al~~a~~~~~p~liev~~~~ 539 (561)
T PRK06048 518 RPAIEEAVASDRPVVIDFIVEC 539 (561)
T ss_pred HHHHHHHHhCCCCEEEEEEecC
Confidence 4455555567899999999854
No 220
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=37.75 E-value=49 Score=20.04 Aligned_cols=20 Identities=5% Similarity=0.125 Sum_probs=16.6
Q ss_pred HHHHHHHHcCCCCHHHHhhh
Q psy11439 71 SLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 71 ~~~~~L~~~g~~~~~e~~~~ 90 (91)
+.-.+|...|++|+++.+++
T Consensus 20 ~l~d~L~q~~VLt~~d~EeI 39 (86)
T cd08785 20 RLTPYLRQCKVLDEQDEEEV 39 (86)
T ss_pred HHHHHHHhcCCCCHHHHHHH
Confidence 36788999999999887765
No 221
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=37.59 E-value=39 Score=26.44 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=18.8
Q ss_pred HHHHHHHHHHccCCCEEEEEee
Q psy11439 17 AARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 17 a~~~a~~~~R~~~gP~lie~~t 38 (91)
+++.|++++++.+.|+|||+.+
T Consensus 26 VieAAl~~a~~~~~pvLiEAT~ 47 (421)
T PRK15052 26 VIEAALAFDLNSTRKVLIEATS 47 (421)
T ss_pred HHHHHHHHHhhcCCcEEEEecc
Confidence 4567788999999999999965
No 222
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=37.53 E-value=25 Score=18.13 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=12.2
Q ss_pred HHcCCCCHHHHhhhC
Q psy11439 77 LNASLVTPEELKREL 91 (91)
Q Consensus 77 ~~~g~~~~~e~~~~~ 91 (91)
+..|++|+++-++++
T Consensus 22 V~~g~IT~eey~eIT 36 (40)
T PF09693_consen 22 VEAGWITKEEYKEIT 36 (40)
T ss_pred hhcCeECHHHHHHhh
Confidence 678899999988764
No 223
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=37.30 E-value=1.7e+02 Score=21.60 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=44.3
Q ss_pred ceEEeeC--CCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCC--CCCCCCCCHHHHHHHH
Q psy11439 2 ENKEVDG--MDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS--DPGTSYRTRDEIQEVR 63 (91)
Q Consensus 2 ~~~~vDG--~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~--D~~~~Yr~~~e~~~~~ 63 (91)
.++-+|| .++++-.+.+++++++|+..+ +-||+..=+..|-... +....|.+++|.+.+-
T Consensus 102 tSVM~DgS~l~~eeNi~~T~~vve~Ah~~g--v~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv 165 (286)
T PRK08610 102 TSVMIDASHSPFEENVATTKKVVEYAHEKG--VSVEAELGTVGGQEDDVVADGIIYADPKECQELV 165 (286)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHHcC--CEEEEEEeccCCccCCCCCcccccCCHHHHHHHH
Confidence 4566787 578899999999999999765 6788888777664322 1123499999988774
No 224
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=37.30 E-value=52 Score=25.87 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETATY 39 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~ty 39 (91)
++.++..++++| .+.+||+|||+.+-
T Consensus 513 ~~~el~~al~~a----~~~~~p~lIev~id 538 (554)
T TIGR03254 513 TPDELKAALNEA----LASGKPTLINAVID 538 (554)
T ss_pred CHHHHHHHHHHH----HhCCCCEEEEEEEC
Confidence 455555555544 45689999999873
No 225
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=37.21 E-value=64 Score=21.55 Aligned_cols=30 Identities=23% Similarity=0.011 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 8 GMDILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 8 G~D~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
+....++..+++.|+..+-...+|.|+|..
T Consensus 146 ~~~~~~~~~a~r~a~~~a~~~a~p~LlEPi 175 (177)
T cd01681 146 HRGGGQIIPAARRACYAAFLLASPRLMEPM 175 (177)
T ss_pred CCchhhHHHHHHHHHHHHHhhCCCEEEccc
Confidence 456678889999999998888999999974
No 226
>PRK12474 hypothetical protein; Provisional
Probab=37.13 E-value=48 Score=25.84 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=14.7
Q ss_pred HHHHHHHHccCCCEEEEEee
Q psy11439 19 RFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 19 ~~a~~~~R~~~gP~lie~~t 38 (91)
..|++.+.+.+||.|||+.+
T Consensus 499 ~~al~~a~~~~~p~liev~~ 518 (518)
T PRK12474 499 SAQYAAAMAQRGPRLIEAMI 518 (518)
T ss_pred HHHHHHHHcCCCCEEEEEEC
Confidence 45555556679999999864
No 227
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=36.68 E-value=38 Score=23.04 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=16.3
Q ss_pred HHHHHHHHccCCCEEEEEeeecCCC
Q psy11439 19 RFAVNHCRSDKGPILLETATYRYSG 43 (91)
Q Consensus 19 ~~a~~~~R~~~gP~lie~~tyR~~g 43 (91)
.+|++.|++.++|+||.+- |-.|+
T Consensus 27 ~ea~~~Ak~e~KpIfl~ig-~~~C~ 50 (163)
T PF03190_consen 27 EEALEKAKKENKPIFLSIG-YSWCH 50 (163)
T ss_dssp HHHHHHHHHHT--EEEEEE--TT-H
T ss_pred HHHHHHHHhcCCcEEEEEE-ecCCc
Confidence 5789999999999999885 34443
No 228
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=36.63 E-value=53 Score=25.94 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETATY 39 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~ty 39 (91)
++.++..++++| .+.+||+|||+.+-
T Consensus 521 ~~~el~~al~~a----~~~~~p~lIev~id 546 (569)
T PRK09259 521 TPDELRHALTEA----IASGKPTLINVVID 546 (569)
T ss_pred CHHHHHHHHHHH----HhCCCCEEEEEEEC
Confidence 355555555555 45689999999873
No 229
>PRK05858 hypothetical protein; Provisional
Probab=36.62 E-value=59 Score=25.53 Aligned_cols=29 Identities=10% Similarity=0.221 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHHHHcc-CCCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSD-KGPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~-~gP~lie~~ 37 (91)
.++..+...+..|+..+..+ .||++|++-
T Consensus 133 ~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 162 (542)
T PRK05858 133 QSAENAGRLVDQALQAAVTPHRGPVFVDFP 162 (542)
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCeEEEEcC
Confidence 45778888999999999887 589999884
No 230
>PLN02470 acetolactate synthase
Probab=36.50 E-value=53 Score=26.08 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
++.++-.++++ +.+.++|+|||+.+-+
T Consensus 532 ~~~el~~al~~----a~~~~~p~lieV~i~~ 558 (585)
T PLN02470 532 RKSDLREAIQK----MLDTPGPYLLDVIVPH 558 (585)
T ss_pred CHHHHHHHHHH----HHhCCCCEEEEEEeCC
Confidence 34455444444 4456899999999843
No 231
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=36.38 E-value=95 Score=24.91 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=34.7
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCC
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 46 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~ 46 (91)
..++=.|+.++|..+..|.+.+.+.+-|+++-..+ +.+|+.
T Consensus 129 ~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~--~l~h~~ 169 (595)
T TIGR03336 129 PCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTT--RISHMR 169 (595)
T ss_pred eEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEee--eeccce
Confidence 35566789999999999999999999999999975 556664
No 232
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=35.85 E-value=29 Score=20.70 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=17.8
Q ss_pred CCChHHHHHHHHHHcCCCCHHHHhh
Q psy11439 65 TRDPISSLKDKILNASLVTPEELKR 89 (91)
Q Consensus 65 ~~DPi~~~~~~L~~~g~~~~~e~~~ 89 (91)
.+||+..|=+.|+.+ +++.+|+.+
T Consensus 28 erd~LAhYFQlLitR-LmnneeIsE 51 (81)
T PF10820_consen 28 ERDALAHYFQLLITR-LMNNEEISE 51 (81)
T ss_pred hhhHHHHHHHHHHHH-HhccHhhhH
Confidence 489999998888865 566666544
No 233
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=35.29 E-value=1.8e+02 Score=21.34 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=42.8
Q ss_pred ceEEeeC--CCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCC-----CCCCCCCCHHHHHHH
Q psy11439 2 ENKEVDG--MDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS-----DPGTSYRTRDEIQEV 62 (91)
Q Consensus 2 ~~~~vDG--~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~-----D~~~~Yr~~~e~~~~ 62 (91)
.++-+|| .++.+-.+.+++++++|+..+ +-||+..=+..|.... +....|.+|++...+
T Consensus 98 tSVM~DgS~l~~eeNi~~T~~vv~~ah~~g--v~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~F 163 (287)
T PF01116_consen 98 TSVMIDGSALPFEENIAITREVVEYAHAYG--VSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEF 163 (287)
T ss_dssp SEEEEE-TTS-HHHHHHHHHHHHHHHHHTT---EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHH
T ss_pred ccccccCCcCCHHHHHHHHHHHHHhhhhhC--CEEEEEeeeeeccCCCccccccccccccCHHHHHHH
Confidence 4667788 577899999999999999966 7889988888876321 113459999987766
No 234
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=35.04 E-value=54 Score=20.39 Aligned_cols=27 Identities=11% Similarity=0.304 Sum_probs=20.9
Q ss_pred HHHHHHHHHccCCCEEEEEeeecCCCCC
Q psy11439 18 ARFAVNHCRSDKGPILLETATYRYSGHS 45 (91)
Q Consensus 18 ~~~a~~~~R~~~gP~lie~~tyR~~gHs 45 (91)
...|++.+++.++|+||..-+ =+|||.
T Consensus 8 ~~~al~~A~~~~kpVlV~F~a-~WC~~C 34 (117)
T cd02959 8 LEDGIKEAKDSGKPLMLLIHK-TWCGAC 34 (117)
T ss_pred HHHHHHHHHHcCCcEEEEEeC-CcCHHH
Confidence 577888899999999999865 455543
No 235
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=34.93 E-value=50 Score=19.61 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=20.8
Q ss_pred CChHHHHHHHHHHcCCCCHHHHhhh
Q psy11439 66 RDPISSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 66 ~DPi~~~~~~L~~~g~~~~~e~~~~ 90 (91)
++-|.-+=..|++.++++++|.+.+
T Consensus 15 ~~~i~~llD~Ll~~~Vl~~~E~e~i 39 (83)
T cd08325 15 KGVINGLLDDLLEKNVLNEEEMEKI 39 (83)
T ss_pred HhhHHHHHHHHHHcCCCCHHHHHHH
Confidence 5677778888999999999998754
No 236
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=34.76 E-value=52 Score=19.96 Aligned_cols=20 Identities=20% Similarity=0.086 Sum_probs=17.5
Q ss_pred HHHHHHHHHccCCCEEEEEe
Q psy11439 18 ARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 18 ~~~a~~~~R~~~gP~lie~~ 37 (91)
..+|++.|++.++|+||.+.
T Consensus 6 ~~~a~~~Ak~~~K~llv~~~ 25 (114)
T cd02958 6 FEDAKQEAKSEKKWLLVYLQ 25 (114)
T ss_pred HHHHHHHHHhhCceEEEEEe
Confidence 57889999999999999884
No 237
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=34.50 E-value=60 Score=19.09 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=17.0
Q ss_pred CCh--HHHHHHHHHHcCCCCHHHHhh
Q psy11439 66 RDP--ISSLKDKILNASLVTPEELKR 89 (91)
Q Consensus 66 ~DP--i~~~~~~L~~~g~~~~~e~~~ 89 (91)
-+| |...++.|+++| ++.+++..
T Consensus 29 Vs~~EI~~~Eq~Li~eG-~~~eeiq~ 53 (71)
T PF04282_consen 29 VSASEISAAEQELIQEG-MPVEEIQK 53 (71)
T ss_pred CCHHHHHHHHHHHHHcC-CCHHHHHH
Confidence 455 455889999988 78888753
No 238
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=34.47 E-value=60 Score=25.79 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETATY 39 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~ty 39 (91)
.++.++-.++++|+ +.+||.|||+.+-
T Consensus 517 ~~~~el~~al~~a~----~~~~p~lIeV~i~ 543 (586)
T PRK06276 517 EKPDEIKEALKEAI----KSGEPYLLDIIID 543 (586)
T ss_pred CCHHHHHHHHHHHH----hCCCCEEEEEEec
Confidence 44556555555554 5689999999984
No 239
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=34.44 E-value=60 Score=25.64 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
++.++..+ ++.+.+.+||+|||+.+-+
T Consensus 505 ~~~eL~~a----l~~a~~~~~p~lIev~i~~ 531 (574)
T PRK09124 505 KASELDGA----LQRAFAHDGPALVDVVTAK 531 (574)
T ss_pred CHHHHHHH----HHHHHhCCCCEEEEEEecC
Confidence 34444444 4444556899999998743
No 240
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=34.42 E-value=55 Score=25.74 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=14.3
Q ss_pred HHHHHHHHccCCCEEEEEee
Q psy11439 19 RFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 19 ~~a~~~~R~~~gP~lie~~t 38 (91)
..|++.+.+.+||+|||+.+
T Consensus 529 ~~al~~a~~~~~p~lIev~i 548 (568)
T PRK07449 529 EEALADALPTPGLTVIEVKT 548 (568)
T ss_pred HHHHHHHhcCCCCEEEEEeC
Confidence 34444445678999999976
No 241
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=34.40 E-value=47 Score=21.20 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=15.6
Q ss_pred HHHHHHHHccCCCEEEEEe
Q psy11439 19 RFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 19 ~~a~~~~R~~~gP~lie~~ 37 (91)
.+|++.|++.++|+||.+.
T Consensus 5 ~eal~~Ak~~~KpVll~f~ 23 (124)
T cd02955 5 EEAFEKARREDKPIFLSIG 23 (124)
T ss_pred HHHHHHHHHcCCeEEEEEc
Confidence 3578888899999999863
No 242
>PF10529 Hist_rich_Ca-bd: Histidine-rich Calcium-binding repeat region; InterPro: IPR019552 This entry represents a histidine-rich calcium-binding repeat which appears in proteins called histidine-rich-calcium binding proteins (HRC). HRC is a high capacity, low affinity Ca2+-binding protein, residing in the lumen of the sarcoplasmic reticulum. HRC binds directly to triadin. This binding interaction occurs between the histidine-rich region of HRC and multiple clusters of charged amino acids, named KEKE motifs, in the lumenal domain of triadin. This repeat is found in the acidic region of the protein, which can be long and variable. There is also a cysteine-rich region further towards the C terminus []. HRC may regulate sarcoplasmic reticular calcium transport, play a critical role in maintaining calcium homeostasis, and function in the heart. HRC is a candidate regulator of sarcoplasmic reticular calcium uptake.
Probab=34.23 E-value=23 Score=14.75 Aligned_cols=11 Identities=27% Similarity=0.386 Sum_probs=7.9
Q ss_pred ecCCCCCCCCC
Q psy11439 39 YRYSGHSMSDP 49 (91)
Q Consensus 39 yR~~gHs~~D~ 49 (91)
.|..||...++
T Consensus 1 HRhrgH~~eeD 11 (15)
T PF10529_consen 1 HRHRGHREEED 11 (15)
T ss_pred CccCccccccc
Confidence 37788887665
No 243
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=34.21 E-value=93 Score=25.76 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=33.5
Q ss_pred eeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCC
Q psy11439 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS 47 (91)
Q Consensus 6 vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~ 47 (91)
+|=.||.+++..++.|.+.-+..+-|+++-+.| | .+|+.+
T Consensus 143 LeP~d~Qea~d~~~~afelSe~~~~pVilr~tt-r-~~h~~~ 182 (640)
T COG4231 143 LEPSDPQEAYDYVKYAFELSEKSGLPVILRTTT-R-VSHSRG 182 (640)
T ss_pred ecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEe-e-eeccce
Confidence 455699999999999999999999999998876 3 346544
No 244
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=34.04 E-value=27 Score=29.00 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCHHHHhhhC
Q psy11439 71 SLKDKILNASLVTPEELKREL 91 (91)
Q Consensus 71 ~~~~~L~~~g~~~~~e~~~~~ 91 (91)
++...|++.|++|++++++.+
T Consensus 681 ~lG~~Lv~~g~it~~~l~~aL 701 (727)
T PRK11234 681 PLGKFLVTEGVISQETLDRAL 701 (727)
T ss_pred cHHHHHHHcCCCCHHHHHHHH
No 245
>COG2059 ChrA Chromate transport protein ChrA [Inorganic ion transport and metabolism]
Probab=33.92 E-value=41 Score=23.49 Aligned_cols=22 Identities=14% Similarity=0.394 Sum_probs=17.6
Q ss_pred HHHHHHHHHHc-CCCCHHHHhhh
Q psy11439 69 ISSLKDKILNA-SLVTPEELKRE 90 (91)
Q Consensus 69 i~~~~~~L~~~-g~~~~~e~~~~ 90 (91)
++.+++.++++ +|+|+||..+.
T Consensus 29 i~~~~~e~V~~r~Wis~~ef~~~ 51 (195)
T COG2059 29 IPLMRREVVERRKWISEEEFADA 51 (195)
T ss_pred HHHHHHHHHHhccCCCHHHHHHH
Confidence 56688888876 89999998764
No 246
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=33.89 E-value=20 Score=24.58 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHccCCCEEEEEeeecCCCC
Q psy11439 14 VREAARFAVNHCRSDKGPILLETATYRYSGH 44 (91)
Q Consensus 14 v~~a~~~a~~~~R~~~gP~lie~~tyR~~gH 44 (91)
.-.+++-|.....+++++.||=+.|||..++
T Consensus 15 TTt~aKLAa~~~~~~~~v~lis~D~~R~ga~ 45 (196)
T PF00448_consen 15 TTTIAKLAARLKLKGKKVALISADTYRIGAV 45 (196)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEESTSSTHHH
T ss_pred HhHHHHHHHHHhhccccceeecCCCCCccHH
Confidence 3456777888888899999999999998765
No 247
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=33.20 E-value=57 Score=20.85 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHccCCCEEEEEe
Q psy11439 16 EAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 16 ~a~~~a~~~~R~~~gP~lie~~ 37 (91)
.++..+++ ...+|+|++|.
T Consensus 76 ~~f~~~~~---~~~~pvL~HC~ 94 (135)
T TIGR01244 76 ETFRAAIG---AAEGPVLAYCR 94 (135)
T ss_pred HHHHHHHH---hCCCCEEEEcC
Confidence 44444443 56799999994
No 248
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.08 E-value=1.2e+02 Score=24.15 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETATY 39 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~ty 39 (91)
++.++-.++++|++. .++|+|||+.+-
T Consensus 536 ~~~eL~~al~~a~~~---~~~p~lieV~i~ 562 (587)
T PRK06965 536 KTSDVEPALREALRL---KDRTVFLDFQTD 562 (587)
T ss_pred CHHHHHHHHHHHHhc---CCCcEEEEEEec
Confidence 455555555555542 368999999884
No 249
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=32.63 E-value=69 Score=18.94 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCCCHHHHhhh
Q psy11439 69 ISSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 69 i~~~~~~L~~~g~~~~~e~~~~ 90 (91)
+..+=..|++.|++|+++.+.+
T Consensus 17 v~~ilD~L~~~~Vit~e~~~~I 38 (82)
T cd08330 17 VDPILDKLHGKKVITQEQYSEV 38 (82)
T ss_pred HHHHHHHHHHCCCCCHHHHHHH
Confidence 4445677999999999987754
No 250
>PRK08185 hypothetical protein; Provisional
Probab=32.28 E-value=2.1e+02 Score=21.09 Aligned_cols=60 Identities=8% Similarity=0.047 Sum_probs=40.6
Q ss_pred ceEEeeC--CCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCC----CCCCCCCCCHHHHHHHH
Q psy11439 2 ENKEVDG--MDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM----SDPGTSYRTRDEIQEVR 63 (91)
Q Consensus 2 ~~~~vDG--~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~----~D~~~~Yr~~~e~~~~~ 63 (91)
.++-+|| .+..+-.+.+++.+++++..+-|+ |+..-++.|-.. ......|.+++|.+..-
T Consensus 93 ~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~v--E~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~ 158 (283)
T PRK08185 93 TSVMIDGSLLPYEENVALTKEVVELAHKVGVSV--EGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFV 158 (283)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeE--EEEEeeccCcccccccccccccCCCHHHHHHHH
Confidence 4677787 467889999999999999988776 555555544110 11112388998887664
No 251
>TIGR03119 one_C_fhcD formylmethanofuran--tetrahydromethanopterin N-formyltransferase. Members of this protein family are the FhcD protein of tetrahydromethanopterin (H4MPT)-dependent C-1 carrier metabolism. In the archaea, FhcD is designated formylmethanofuran--tetrahydromethanopterin N-formyltransferase, while in bacteria it is commonly designated as formyltransferase/hydrolase complex subunit D. FhcD is essential for one-carbon metabolism in at least three groups of prokaryotes: methanogenic archaea, sulfate-reducing archaea, and methylotrophic bacteria.
Probab=31.80 E-value=1.2e+02 Score=22.64 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=23.5
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHccCC
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSDKG 30 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~~g 30 (91)
=+.+||.|..+|.+|++..++-+-+-.|
T Consensus 237 EIVIdGl~~~aV~~Amr~Gi~Aa~~~~G 264 (287)
T TIGR03119 237 EIVIDGLNEAAIAEAMRVGILAATEIPG 264 (287)
T ss_pred EEEEcCCCHHHHHHHHHHHHHHHhcCCC
Confidence 3789999999999999999988865333
No 252
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=31.45 E-value=1.3e+02 Score=21.34 Aligned_cols=66 Identities=21% Similarity=0.408 Sum_probs=39.3
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCC-CCCCCCCCCHHHHHHHHhCCChHHH-HHHHHHHcCC
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM-SDPGTSYRTRDEIQEVRQTRDPISS-LKDKILNASL 81 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~-~D~~~~Yr~~~e~~~~~~~~DPi~~-~~~~L~~~g~ 81 (91)
+.||..|-.... ....+++++.+-|++.- .|... .|+ +..+-. +-|+...||+.+ +|+.|.++|+
T Consensus 105 ~VvdaiD~~~~k---~~L~~~c~~~~ip~I~s------~g~g~~~dp-~~i~i~---di~~t~~~pla~~~R~~Lrk~~~ 171 (231)
T cd00755 105 FVVDAIDSIRAK---VALIAYCRKRKIPVISS------MGAGGKLDP-TRIRVA---DISKTSGDPLARKVRKRLRKRGI 171 (231)
T ss_pred EEEEcCCCHHHH---HHHHHHHHHhCCCEEEE------eCCcCCCCC-CeEEEc---cEeccccCcHHHHHHHHHHHcCC
Confidence 456665544332 34567788888888763 34433 343 323322 234456899988 7888888887
Q ss_pred C
Q psy11439 82 V 82 (91)
Q Consensus 82 ~ 82 (91)
.
T Consensus 172 ~ 172 (231)
T cd00755 172 F 172 (231)
T ss_pred C
Confidence 4
No 253
>PRK02114 formylmethanofuran--tetrahydromethanopterin formyltransferase; Provisional
Probab=31.21 E-value=1.2e+02 Score=22.73 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=25.5
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSDKGPILLET 36 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~ 36 (91)
=+.+||.|..+|.+|++..++-+-.- |-++.+
T Consensus 245 EIVIdGl~~~aV~~Amr~Gi~Aa~~~--~Gv~~I 276 (297)
T PRK02114 245 EIVIDGLDEEAVAEAMRAGIEAACAV--PGVVKI 276 (297)
T ss_pred EEEEcCCCHHHHHHHHHHHHHHHhcC--CCeEEE
Confidence 47899999999999999999888653 445544
No 254
>PLN02573 pyruvate decarboxylase
Probab=31.15 E-value=1.1e+02 Score=24.34 Aligned_cols=26 Identities=15% Similarity=0.038 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHccCCCEEEEEee
Q psy11439 11 ILAVREAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 11 ~~~v~~a~~~a~~~~R~~~gP~lie~~t 38 (91)
+.++-.++++|++. +.+||+|||+.+
T Consensus 526 ~~eL~~al~~a~~~--~~~~p~lieV~v 551 (578)
T PLN02573 526 EEELIEAIATATGE--KKDCLCFIEVIV 551 (578)
T ss_pred HHHHHHHHHHHHhh--CCCCcEEEEEEc
Confidence 55555555555432 248899999987
No 255
>COG3218 ABC-type uncharacterized transport system, auxiliary component [General function prediction only]
Probab=30.98 E-value=59 Score=23.07 Aligned_cols=25 Identities=28% Similarity=0.207 Sum_probs=21.3
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHc
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRS 27 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~ 27 (91)
...|||++.-+++.|+..|+..+-+
T Consensus 170 ~~pv~g~~~~a~v~A~dkA~~q~~~ 194 (205)
T COG3218 170 SQPVDGKGNAAVVKAFDKAFAQLTN 194 (205)
T ss_pred eecccCCCcHHHHHHHHHHHHHHHH
Confidence 4568999999999999999987643
No 256
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=30.86 E-value=2.2e+02 Score=20.98 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=42.0
Q ss_pred ceEEeeC--CCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCC--CCCCCCCCHHHHHHHH
Q psy11439 2 ENKEVDG--MDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS--DPGTSYRTRDEIQEVR 63 (91)
Q Consensus 2 ~~~~vDG--~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~--D~~~~Yr~~~e~~~~~ 63 (91)
.++-+|| .++++-.+.++++++.|+..+-| ||+..=+..|-... +....|.++++...+-
T Consensus 99 tSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~--VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv 162 (283)
T PRK07998 99 TSVMIDGAALPFEENIAFTKEAVDFAKSYGVP--VEAELGAILGKEDDHVSEADCKTEPEKVKDFV 162 (283)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCE--EEEEeccCCCccccccccccccCCHHHHHHHH
Confidence 3566787 45667888999999999996654 77777667664422 1123499999887764
No 257
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=30.61 E-value=77 Score=19.16 Aligned_cols=20 Identities=10% Similarity=0.120 Sum_probs=16.5
Q ss_pred HHHHHHHHcCCCCHHHHhhh
Q psy11439 71 SLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 71 ~~~~~L~~~g~~~~~e~~~~ 90 (91)
++-.+|...|++|.++.+.+
T Consensus 20 ~l~d~L~s~~ILt~~d~EeI 39 (84)
T cd08810 20 RHFDYLRSKRILTRDDCEEI 39 (84)
T ss_pred HHHHHHHHcCCCCHHHHHHH
Confidence 36788999999999887764
No 258
>cd07049 BMC_EutL_repeat1 ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain repeat 1. EutL proteins are homologs of the carboxysome shell protein. They are encoded within the eut operon and might be required for the formation of the outer shell of the bacterial eut polyhedral organelles which are involved in the cobalamin-dependent degradation of ethanolamine. Although it has been suggested that EutL might form hexamers and further assemble into the flat facets of the polyhedral outer shell of the eut organelles at present no experimental evidence directly supports this view. EutL proteins contain two tandem BMC domains. This CD includes domain 1 (the first BMC domain of EutL).
Probab=30.47 E-value=94 Score=19.66 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.8
Q ss_pred eeCCCHHHHHHHHHHHHHHHHcc
Q psy11439 6 VDGMDILAVREAARFAVNHCRSD 28 (91)
Q Consensus 6 vDG~D~~~v~~a~~~a~~~~R~~ 28 (91)
+-|.||.+|..+++.++++..+.
T Consensus 78 i~G~dvsdV~sal~~~l~~l~~~ 100 (103)
T cd07049 78 LAGPSPAEVRSGLNAAIDFIENE 100 (103)
T ss_pred EeCCCHHHHHHHHHHHHHHHhcc
Confidence 67889999999999999998775
No 259
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=30.47 E-value=77 Score=24.06 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=20.6
Q ss_pred HHHHHHHHHHccCCCEEEEEeeecCC
Q psy11439 17 AARFAVNHCRSDKGPILLETATYRYS 42 (91)
Q Consensus 17 a~~~a~~~~R~~~gP~lie~~tyR~~ 42 (91)
-++..-+.|++.+-|+|||+.||-..
T Consensus 145 ~vervg~eC~a~dipf~lE~l~Yd~~ 170 (329)
T PRK04161 145 YIERIGSECTAEDIPFFLELLTYDER 170 (329)
T ss_pred HHHHHHHHHHHCCCCeEEEEeccCCc
Confidence 34555666999999999999999644
No 260
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=30.44 E-value=1.5e+02 Score=22.78 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=35.0
Q ss_pred eeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCC
Q psy11439 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS 47 (91)
Q Consensus 6 vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~ 47 (91)
+-..|+.++|..+..|.+.+.+..-|+++-..+|+.. |...
T Consensus 134 ~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~s-h~~~ 174 (390)
T PRK08366 134 FYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILS-HTYD 174 (390)
T ss_pred EeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccc-cccc
Confidence 3457899999999999999999999999999998876 4433
No 261
>PF04746 DUF575: Protein of unknown function (DUF575); InterPro: IPR006835 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=30.41 E-value=62 Score=20.27 Aligned_cols=30 Identities=27% Similarity=0.542 Sum_probs=21.8
Q ss_pred HHHHHhCCChHHHHHHHHHH-cCCCCHHHHhh
Q psy11439 59 IQEVRQTRDPISSLKDKILN-ASLVTPEELKR 89 (91)
Q Consensus 59 ~~~~~~~~DPi~~~~~~L~~-~g~~~~~e~~~ 89 (91)
++... .+|++.+.+++|.. ++-++++++++
T Consensus 60 vEk~~-G~dhisrve~~Lk~~R~~i~~ed~~K 90 (101)
T PF04746_consen 60 VEKTR-GRDHISRVEEYLKSLRVTIEPEDLGK 90 (101)
T ss_pred HHHhh-CCCchHHHHHHHHHhcCCCCcccccc
Confidence 34554 79999999999985 45566666553
No 262
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=30.30 E-value=84 Score=23.81 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=21.4
Q ss_pred HHHHHHHHHHccCCCEEEEEeeecCCC
Q psy11439 17 AARFAVNHCRSDKGPILLETATYRYSG 43 (91)
Q Consensus 17 a~~~a~~~~R~~~gP~lie~~tyR~~g 43 (91)
-++..-+.|++.+-|+|||+.||-...
T Consensus 143 ~vervg~eC~a~dipf~lE~ltY~~~~ 169 (324)
T PRK12399 143 YIERIGSECVAEDIPFFLEILTYDEKI 169 (324)
T ss_pred HHHHHHHHHHHCCCCeEEEEeeccCcc
Confidence 345556669999999999999988654
No 263
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=30.17 E-value=97 Score=21.01 Aligned_cols=29 Identities=21% Similarity=-0.004 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
....++..+++.|+..+-...+|.|+|-.
T Consensus 147 ~~~~qi~~aar~a~~~a~l~a~prLLEPi 175 (178)
T cd01683 147 RGGGQIIPTARRACYSAFLLATPRLMEPI 175 (178)
T ss_pred CchHHHHHHHHHHHHHHHHHCCCEEEcce
Confidence 34678888999999888888899999964
No 264
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=29.97 E-value=52 Score=26.02 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHccCCCEEEEEeeecCC
Q psy11439 15 REAARFAVNHCRSDKGPILLETATYRYS 42 (91)
Q Consensus 15 ~~a~~~a~~~~R~~~gP~lie~~tyR~~ 42 (91)
-.+++.|.-..+.+..|.++-|.|||..
T Consensus 115 Tt~~KLA~~lkk~~~kvllVaaD~~RpA 142 (451)
T COG0541 115 TTAGKLAKYLKKKGKKVLLVAADTYRPA 142 (451)
T ss_pred hHHHHHHHHHHHcCCceEEEecccCChH
Confidence 3567778878889999999999999976
No 265
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=29.83 E-value=72 Score=18.72 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=22.7
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCC
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKG 30 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~g 30 (91)
|...+-|.++.+++..+-.++..+|...+
T Consensus 14 p~~~~~g~s~~~~W~~i~~~v~~~r~~~~ 42 (86)
T PF05965_consen 14 PGEVFEGSSPTEAWSEILERVNEARKQSG 42 (86)
T ss_dssp GGG-EEESSHHHHHHHHHHHHHHHHT---
T ss_pred CCCEEEeCCHHHHHHHHHHHHHHHHhhcc
Confidence 45677899999999999999999998776
No 266
>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=29.75 E-value=1.5e+02 Score=19.21 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCC
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETATYRYSGH 44 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gH 44 (91)
+|+..+..++.+|++.+ |-.+++...+++.++
T Consensus 21 ~d~~~l~~~l~~a~~~~----g~til~~~~h~F~p~ 52 (127)
T PRK03124 21 NDMELIEDIMVDAALEA----GAEVREVAFHKFSPQ 52 (127)
T ss_pred CCHHHHHHHHHHHHHHc----CCeEEEEEeEEcCCC
Confidence 57888888888888754 567899999999865
No 267
>PRK02487 hypothetical protein; Provisional
Probab=29.73 E-value=1.6e+02 Score=19.54 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=29.8
Q ss_pred eeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCC
Q psy11439 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHS 45 (91)
Q Consensus 6 vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs 45 (91)
..-.+.......+..|++.+++.+-|+-|.+. + .||-
T Consensus 20 ~~~l~~~~A~~l~~~a~~~A~~~g~~v~IaVv--~-~G~~ 56 (163)
T PRK02487 20 FPHFDNDDAWQLGSLLVELARERGLPIAIDIT--L-NGQP 56 (163)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCEEEEEE--E-CCcE
Confidence 44556778888899999999998889998875 5 8874
No 268
>PF00990 GGDEF: GGDEF domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria [,]. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase [].; PDB: 3IGN_A 3BRE_B 3EZU_A 3ICL_B 3PJX_A 3PJW_A 3HVW_A 3HVA_B 3I5C_B 3I5B_B ....
Probab=29.73 E-value=79 Score=19.18 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.6
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCC
Q psy11439 7 DGMDILAVREAARFAVNHCRSDKG 30 (91)
Q Consensus 7 DG~D~~~v~~a~~~a~~~~R~~~g 30 (91)
++.++.+++..+..|+..+++.++
T Consensus 136 ~~~~~~~ll~~a~~al~~ak~~g~ 159 (161)
T PF00990_consen 136 DGQDADELLKKADQALQEAKEQGR 159 (161)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999998664
No 269
>PF11630 DUF3254: Protein of unknown function (DUF3254); InterPro: IPR024509 Anti-lipopolysaccharide factor binds to bacterial LPS and may specifically inhibit the LPS-mediated activation of the hemolymph coagulation. It has a strong antibacterial effect, especially on the growth of Gram-negative bacteria [,]. This entry also includes the antibacterial protein Scygonadin, which has antibacterial activity against the Gram-positive bacterium Micrococcus luteus [].; PDB: 2JOB_A.
Probab=29.64 E-value=63 Score=20.36 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=17.9
Q ss_pred CChHHHHHHHHHHcCCCCHHHHhh
Q psy11439 66 RDPISSLKDKILNASLVTPEELKR 89 (91)
Q Consensus 66 ~DPi~~~~~~L~~~g~~~~~e~~~ 89 (91)
+..+..|-+..++.|++|++|.+.
T Consensus 74 ~~a~rDFv~kA~~~gLiT~eeA~~ 97 (100)
T PF11630_consen 74 RKATRDFVRKAFQAGLITEEEAQP 97 (100)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHH
T ss_pred hHHHHHHHHHHHHcCCccHHHHHH
Confidence 456777888899999999998764
No 270
>PF04599 Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 Protein G5 is found in a number of Poxviruses.
Probab=29.48 E-value=1.2e+02 Score=23.90 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=21.7
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEE
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILL 34 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~li 34 (91)
..+.+||.|.+=|. ..+.--...+.|..|.+|
T Consensus 160 ~IvyCDgvDAEFvM-C~~Ak~~a~~~g~WPlli 191 (425)
T PF04599_consen 160 EIVYCDGVDAEFVM-CARAKKLAAKNGRWPLLI 191 (425)
T ss_pred eEEEECCcChhHHH-HHHHHHHHHhcCCCceEE
Confidence 46789999986443 222223345789999999
No 271
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=29.30 E-value=77 Score=24.52 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=12.7
Q ss_pred eEEeeCCCHHHHHHHHHHHHH
Q psy11439 3 NKEVDGMDILAVREAARFAVN 23 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~ 23 (91)
-+.|+|.|+.++...+..|++
T Consensus 229 p~~Veg~dp~~~h~~ma~ald 249 (379)
T PF09364_consen 229 PIFVEGDDPADMHQAMAAALD 249 (379)
T ss_dssp EEEEE---HHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHH
Confidence 367999999999876655543
No 272
>KOG0426|consensus
Probab=29.14 E-value=65 Score=21.53 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=20.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHH
Q psy11439 44 HSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILN 78 (91)
Q Consensus 44 Hs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~ 78 (91)
|+-+||+..|-..+ -+ =.|+...++.|+.
T Consensus 94 HaPGDDP~~YEls~----ER--WSPVQSvEKILLS 122 (165)
T KOG0426|consen 94 HAPGDDPMGYELSA----ER--WSPVQSVEKILLS 122 (165)
T ss_pred eCCCCCCccchhhh----hc--CChHHHHHHHHHH
Confidence 88899998884332 22 3688888887764
No 273
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=29.11 E-value=84 Score=23.81 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHccCCCEEEEEeeecCCC
Q psy11439 16 EAARFAVNHCRSDKGPILLETATYRYSG 43 (91)
Q Consensus 16 ~a~~~a~~~~R~~~gP~lie~~tyR~~g 43 (91)
+-++..-+.|++.+-|+|||+.||-..+
T Consensus 143 a~vervg~ec~a~dipf~lE~ltYd~~~ 170 (325)
T TIGR01232 143 AYIERIGSECVAEDIPFFLEVLTYDDNI 170 (325)
T ss_pred HHHHHHHHHHHHCCCCeEEEEeccCCCC
Confidence 3446677788999999999999996554
No 274
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=29.00 E-value=2.4e+02 Score=20.76 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=44.4
Q ss_pred ceEEeeC--CCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCC---C-CCCCCCCHHHHHHHH
Q psy11439 2 ENKEVDG--MDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS---D-PGTSYRTRDEIQEVR 63 (91)
Q Consensus 2 ~~~~vDG--~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~---D-~~~~Yr~~~e~~~~~ 63 (91)
.++=+|| .++++=.+.+++.+++|+..+ +-||+..=+..|...+ + ....|.++++...+-
T Consensus 99 tSVM~DgS~lp~eeNi~~T~~vv~~Ah~~g--vsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv 164 (284)
T PRK12857 99 TSVMIDGSKLPLEENIALTKKVVEIAHAVG--VSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFV 164 (284)
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHHHHHcC--CEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHH
Confidence 4666787 578999999999999999755 6788887777764322 1 122499999988774
No 275
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=28.81 E-value=86 Score=17.21 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHcc-CCCEEEE
Q psy11439 16 EAARFAVNHCRSD-KGPILLE 35 (91)
Q Consensus 16 ~a~~~a~~~~R~~-~gP~lie 35 (91)
+|+..|.+.+++. ++.++|+
T Consensus 30 eAi~~Ar~~a~~~~~~el~Ih 50 (62)
T PF09954_consen 30 EAIEAARELAKNQGGGELIIH 50 (62)
T ss_pred HHHHHHHHHHHhCCCcEEEEE
Confidence 4555556666664 6666663
No 276
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.78 E-value=84 Score=24.86 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHHHHcc-CCCEEEEEeeec
Q psy11439 10 DILAVREAARFAVNHCRSD-KGPILLETATYR 40 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~-~gP~lie~~tyR 40 (91)
++.++-.++.+|+ +. +||+|||+.+-+
T Consensus 522 ~~~el~~al~~a~----~~~~~p~lIev~i~~ 549 (574)
T PRK06466 522 DLKDLKPKLEEAF----AMKDRLVFIDIYVDR 549 (574)
T ss_pred CHHHHHHHHHHHH----hcCCCcEEEEEEeCC
Confidence 3444444444444 43 899999999854
No 277
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=28.70 E-value=1.3e+02 Score=17.73 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETATY 39 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~ty 39 (91)
|..+|+.++++++.++.+..+=+.+++..-
T Consensus 46 ~~~~Vf~~l~~~~~~a~~~~~H~v~~~T~S 75 (81)
T PF07615_consen 46 DEEDVFDALEAAFERAAEEGPHVVMVVTIS 75 (81)
T ss_dssp BHHHHHHHHHHHHHHHHCCSSSEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhccCCeEEEEEEEE
Confidence 688999999999999999655588887653
No 278
>PRK15005 universal stress protein F; Provisional
Probab=28.55 E-value=1.1e+02 Score=18.70 Aligned_cols=30 Identities=10% Similarity=0.106 Sum_probs=21.6
Q ss_pred EeeCCCHHHHHHHHHHHHHHHHccCCCEEE
Q psy11439 5 EVDGMDILAVREAARFAVNHCRSDKGPILL 34 (91)
Q Consensus 5 ~vDG~D~~~v~~a~~~a~~~~R~~~gP~li 34 (91)
-+||.+-.....++..|.+.++..+.++.+
T Consensus 8 ~~D~s~~~~~~~a~~~a~~la~~~~~~l~l 37 (144)
T PRK15005 8 PIDISDSELTQRVISHVEAEAKIDDAEVHF 37 (144)
T ss_pred ecCCCchhHHHHHHHHHHHHHhccCCeEEE
Confidence 468877643567888899888887776543
No 279
>cd02414 jag_KH jag_K homology RNA-binding domain. The KH domain is found in proteins homologous to the Bacillus subtilis protein Jag, which is associated with SpoIIIJ and is necessary for the third stage of sporulation. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=28.43 E-value=91 Score=17.92 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecC
Q psy11439 8 GMDILAVREAARFAVNHCRSDKGPILLETATYRY 41 (91)
Q Consensus 8 G~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~ 41 (91)
|.-+.++--.+..++.+-.....++.|++.-||-
T Consensus 43 G~tL~AlQ~L~~~~~~~~~~~~~~v~lDv~~YR~ 76 (77)
T cd02414 43 GKTLDALQYLANLVLNRNTGEYVRITLDVEGYRE 76 (77)
T ss_pred CccHHHHHHHHHHHHhhccCCceEEEEECccccc
Confidence 3334555555666666655667788998887774
No 280
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=28.39 E-value=1.2e+02 Score=23.04 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=28.8
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLET 36 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~ 36 (91)
||...++ .+..+...++..|++++.+.++|+.|-+
T Consensus 116 i~~~~~~-~~~~~~~~~~~~a~~~~~~~~~p~a~l~ 150 (361)
T TIGR03297 116 IPWEVLS-TDNDEALAQIERALAHALATSRPYALVV 150 (361)
T ss_pred CCEEECC-CChHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 5666774 4667889999999999999999988866
No 281
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=28.34 E-value=1.5e+02 Score=22.66 Aligned_cols=42 Identities=7% Similarity=0.118 Sum_probs=34.9
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHcc--CCCEEEEEeeecCCCCC
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSD--KGPILLETATYRYSGHS 45 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~--~gP~lie~~tyR~~gHs 45 (91)
.+.+.-.++.++|..+..|.+.+.+- .-|+++-..+|+. +|+
T Consensus 138 ~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~-sh~ 181 (407)
T PRK09622 138 WISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLC-SHT 181 (407)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhh-hCc
Confidence 35677889999999999999999887 8999998888654 453
No 282
>PF09830 ATP_transf: ATP adenylyltransferase; InterPro: IPR019200 Diadenosine 5',5'''-P-1,P-4-tetraphosphate (Ap4A) and related diadenosine oligoposphates such as Ap3A are important intracellular and extracellular signalling molecules in prokaryotes and eukaryotes []. They are implicated in the regulation of many vital celluar functions including stress response, cell division and apoptosis. Synthesis primarily occurs via aminoacyl-tRNA synthetases adding the AMP moiety of an aminoacyl-AMP to an acceptor nucleotide, and is an inevitable byproduct of protein synthesis. The concentration of these compounds must thus be controlled both to ensure the proper regulation of various celluar processes, but also to prevent their buildup to potentially toxic levels. This domain is found in a group of ATP adenylyltransferases found in bacteria and lower eukaryotes which catalyse the interconversion of Ap4A to ATP and ADP [, , ]. While these enzymes are thought to act primarily to break down Ap4A, there is evidence to suggest that in some circumstances they may also act in a biosynthetic role. Some variability in substrate range is apparent eg the cyanobacterial enzyme can also utilise Ap3A as a substrate, while the Saccharomyces enzymes apparently cannot.; GO: 0003877 ATP adenylyltransferase activity
Probab=28.02 E-value=87 Score=17.62 Aligned_cols=20 Identities=15% Similarity=0.476 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHhCCChHHHHH
Q psy11439 53 YRTRDEIQEVRQTRDPISSLK 73 (91)
Q Consensus 53 Yr~~~e~~~~~~~~DPi~~~~ 73 (91)
-+++++++.|+ +..|+..++
T Consensus 38 vk~~~~~~~~~-~~gp~~iL~ 57 (62)
T PF09830_consen 38 VKSEEELDWLK-EDGPMKILR 57 (62)
T ss_pred eCCHHHHHHHH-HcCHHHHHH
Confidence 57899999998 478885443
No 283
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=28.02 E-value=91 Score=19.53 Aligned_cols=24 Identities=25% Similarity=0.097 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHccCCCEEEEEee
Q psy11439 12 LAVREAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 12 ~~v~~a~~~a~~~~R~~~gP~lie~~t 38 (91)
.+-..++..+++ .-.+|+|+.|.|
T Consensus 72 ~~~v~~f~~~l~---~~~~Pvl~hC~s 95 (110)
T PF04273_consen 72 EEDVEAFADALE---SLPKPVLAHCRS 95 (110)
T ss_dssp HHHHHHHHHHHH---TTTTSEEEE-SC
T ss_pred HHHHHHHHHHHH---hCCCCEEEECCC
Confidence 344445555554 447899999964
No 284
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=27.82 E-value=39 Score=19.00 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCCCCHHHHhhh
Q psy11439 70 SSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 70 ~~~~~~L~~~g~~~~~e~~~~ 90 (91)
..++++|.++|.+|-.+|..+
T Consensus 3 ~~i~~~l~~~~~~S~~eLa~~ 23 (69)
T PF09012_consen 3 QEIRDYLRERGRVSLAELARE 23 (69)
T ss_dssp HHHHHHHHHS-SEEHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHH
Confidence 457788888998888888764
No 285
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=27.80 E-value=1.2e+02 Score=23.92 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=29.3
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHccC-CCEEEEEeee
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSDK-GPILLETATY 39 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ty 39 (91)
.+.+||.==-..+.-++.+++.+++.+ ..++|++.|+
T Consensus 30 vi~i~g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTP 67 (436)
T COG1030 30 VIEIDGAIDPASADYLQRALQSAEEENAAAVVLELDTP 67 (436)
T ss_pred EEEecCccCHHHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 356777665677888889999999888 7888888874
No 286
>PF15601 Imm42: Immunity protein 42
Probab=27.21 E-value=80 Score=20.83 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=18.9
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEE
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILL 34 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~li 34 (91)
+++||.+++++. ..|++.+.+.+-|+.|
T Consensus 106 vt~dG~~~f~~l---~~a~~~a~~~~~~v~I 133 (134)
T PF15601_consen 106 VTSDGKDLFEVL---FRALESAIEEKVDVVI 133 (134)
T ss_pred cCcchhhHHHHH---HHHHHHHHhcCCCeee
Confidence 467888887654 4556666666767765
No 287
>PRK10486 autoinducer-2 (AI-2) modifying protein LsrG; Provisional
Probab=27.05 E-value=1.5e+02 Score=17.71 Aligned_cols=67 Identities=12% Similarity=0.099 Sum_probs=45.0
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCC-----CCCCHHHHHHHHhCCChHHHHHHHHH
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGT-----SYRTRDEIQEVRQTRDPISSLKDKIL 77 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~-----~Yr~~~e~~~~~~~~DPi~~~~~~L~ 77 (91)
+.+.-....++..+++..+...|+..|=...+ .||- ..|+.. .|+|.+-++... +..-...|.+.+.
T Consensus 8 ~~~kpg~~~~~~~~l~~~~~~sr~EpGcl~y~--~~~~----~~~p~~~~~~E~w~d~~Al~~H~-~tph~k~f~~~~~ 79 (96)
T PRK10486 8 INVKEDKVDEFIEVFRQNHLGSIQEPGNLRFD--VLQD----PEVPTRFYIYEAYKDEAAVAFHK-TTPHYKTCVEKLE 79 (96)
T ss_pred EEECcchHHHHHHHHHHHHHHHhCCCCceEEE--EEeC----CCCCCEEEEEEEeCCHHHHHHHh-cCHHHHHHHHHHH
Confidence 34555678889999999999999876633333 3332 233222 499999998876 4677777776654
No 288
>KOG3375|consensus
Probab=27.02 E-value=57 Score=22.22 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=16.3
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHH
Q psy11439 40 RYSGHSMSDPGTSYRTRDEIQEV 62 (91)
Q Consensus 40 R~~gHs~~D~~~~Yr~~~e~~~~ 62 (91)
|+.||-..-.+ |+|++|++.-
T Consensus 5 kf~ghkgr~Rq--ftSpee~D~~ 25 (174)
T KOG3375|consen 5 KFGGHKGRARQ--FTSPEEIDQQ 25 (174)
T ss_pred ccCCCCCcccc--cCCHHHHHHH
Confidence 68888877654 9999998753
No 289
>KOG2244|consensus
Probab=26.73 E-value=35 Score=28.09 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q psy11439 8 GMDILAVREAARFAVNHCRSDKGPILLET 36 (91)
Q Consensus 8 G~D~~~v~~a~~~a~~~~R~~~gP~lie~ 36 (91)
.++|..-|---++|.+.+|+.++|+|+-+
T Consensus 91 aynpvdwypwgqeaf~kar~enkpifLsv 119 (786)
T KOG2244|consen 91 AYNPVDWYPWGQEAFNKARAENKPIFLSV 119 (786)
T ss_pred ccCCcccCcchHHHHHHHHhcCCCEEEEc
Confidence 35666777788999999999999999954
No 290
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=26.68 E-value=1.1e+02 Score=17.34 Aligned_cols=24 Identities=13% Similarity=0.441 Sum_probs=16.9
Q ss_pred CChHHHHHHHHH----HcCCCCHHHHhh
Q psy11439 66 RDPISSLKDKIL----NASLVTPEELKR 89 (91)
Q Consensus 66 ~DPi~~~~~~L~----~~g~~~~~e~~~ 89 (91)
.||...||+.++ +.|+-+.+++++
T Consensus 2 ~DP~~DFr~SM~EMI~~~~i~~~~~Lee 29 (59)
T PF04844_consen 2 SDPYEDFRESMVEMIEENGIRDWDDLEE 29 (59)
T ss_pred CCHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 588888888766 466666666654
No 291
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=26.67 E-value=1e+02 Score=20.07 Aligned_cols=27 Identities=7% Similarity=0.149 Sum_probs=20.6
Q ss_pred HHHHHHHHHHccCCCEEEEEeeecCCCC
Q psy11439 17 AARFAVNHCRSDKGPILLETATYRYSGH 44 (91)
Q Consensus 17 a~~~a~~~~R~~~gP~lie~~tyR~~gH 44 (91)
...+|++.+++.++|+||...+ -+|++
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~s-dwC~~ 37 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHL-EDCPH 37 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeC-CcCHh
Confidence 5788999999999999998533 34433
No 292
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=26.10 E-value=45 Score=23.37 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=13.6
Q ss_pred EeeecCCCCCCCC--CCCCCCCHHHHHHHH
Q psy11439 36 TATYRYSGHSMSD--PGTSYRTRDEIQEVR 63 (91)
Q Consensus 36 ~~tyR~~gHs~~D--~~~~Yr~~~e~~~~~ 63 (91)
..-+|++|++... .. .| +++|++.|.
T Consensus 167 ~~y~RlhG~~~~~~~~~-~Y-s~~eL~~~a 194 (230)
T PF01904_consen 167 FAYVRLHGRNGEGWYDY-RY-SDEELEEWA 194 (230)
T ss_dssp EEEEEE--S-TTTTTB------HHHHHHHH
T ss_pred CeEEeeccCcccccccc-cC-CHHHHHHHH
Confidence 3447999998762 32 26 678898886
No 293
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.67 E-value=1.8e+02 Score=20.10 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=24.1
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~t 38 (91)
++-++|.+-..+.+.+...+ ++.+||++++..+
T Consensus 34 gil~~~e~De~v~esv~dVv---~rwGG~F~v~~~~ 66 (179)
T COG1303 34 GILLDGEEDEKVVESVEDVV---ERWGGPFFVKFGV 66 (179)
T ss_pred eEEEcCcccHHHHHHHHHHH---HhcCCCEEEEEcc
Confidence 56778887666777766655 5789999998743
No 294
>PHA00649 hypothetical protein
Probab=25.41 E-value=94 Score=18.51 Aligned_cols=23 Identities=26% Similarity=0.004 Sum_probs=14.0
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHc
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRS 27 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~ 27 (91)
.-||-|||++| +-+++-+.+.|+
T Consensus 26 LGVD~~~P~~V-EEFr~D~~~~Rr 48 (83)
T PHA00649 26 LGVDVDVPEQV-EEFREDLRFGRR 48 (83)
T ss_pred HcCCCCCHHHH-HHHHHHHHHHHH
Confidence 44788888888 445554444444
No 295
>smart00542 FYRC "FY-rich" domain, C-terminal region. is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=25.25 E-value=1.1e+02 Score=18.14 Aligned_cols=29 Identities=14% Similarity=-0.006 Sum_probs=24.8
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCC
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKG 30 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~g 30 (91)
|...+.|..+.+++..+-..|+.+|...+
T Consensus 10 ~~~~~~~~S~~~~W~~vl~~v~~~r~~~~ 38 (86)
T smart00542 10 PDEVFKGESPEKCWEMVLERVQEARIVAR 38 (86)
T ss_pred CCCeEEeCCHHHHHHHHHHHHHHHHHHcc
Confidence 45678899999999999999999998755
No 296
>COG1628 Endonuclease V homolog [Replication, recombination, and repair]
Probab=24.95 E-value=94 Score=21.69 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=27.0
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCC
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDP 49 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~ 49 (91)
.+++||.|+-+...-+-....+.. -.++|+.=.|| .|-|--|.
T Consensus 46 ~i~vDG~D~T~~i~~~v~~~~~~~--~rvVlLdGIt~--aGFNivDi 88 (185)
T COG1628 46 LITVDGLDVTDAISDMVNRSKRRD--LRVVLLDGITF--AGFNIVDI 88 (185)
T ss_pred EEEecCchHHHHHHHHHHHhhccc--ccEEEECCeee--ccceEecH
Confidence 478999998776655555544433 56777777764 44455454
No 297
>COG2037 Ftr Formylmethanofuran:tetrahydromethanopterin formyltransferase [Energy production and conversion]
Probab=24.93 E-value=1.6e+02 Score=21.72 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=27.7
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEE
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILL 34 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~li 34 (91)
||-+.+||-|-++|-+|++..++-+-+-.|-+=|
T Consensus 244 iyEIVInGl~~eavkeAm~~gIeAa~~v~GVvkI 277 (297)
T COG2037 244 IYEIVINGLDEEAVKEAMRVGIEAACRVPGVVKI 277 (297)
T ss_pred eeEEEecCcCHHHHHHHHHHHHHhhhccCCeEEE
Confidence 4668999999999999999999988776664333
No 298
>KOG2672|consensus
Probab=24.80 E-value=74 Score=24.10 Aligned_cols=58 Identities=22% Similarity=0.276 Sum_probs=39.8
Q ss_pred HHHHHHHHHccCCCEEEEEeeecCCC---------CCCCCCCC-CCCCHHHHHHHHhCCChHHHHHHHHH
Q psy11439 18 ARFAVNHCRSDKGPILLETATYRYSG---------HSMSDPGT-SYRTRDEIQEVRQTRDPISSLKDKIL 77 (91)
Q Consensus 18 ~~~a~~~~R~~~gP~lie~~tyR~~g---------Hs~~D~~~-~Yr~~~e~~~~~~~~DPi~~~~~~L~ 77 (91)
+.+-++.+..-.--+||||-|.-|+| ||..|--. .--+-+|+..|- |||-..|++.|-
T Consensus 177 iAkTVq~iK~k~p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~V--RD~RA~yrQSL~ 244 (360)
T KOG2672|consen 177 IAKTVQKIKEKAPEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFV--RDPRANYRQSLS 244 (360)
T ss_pred HHHHHHHHHhhCcccchhhcCccccCchHHHHHHHhcCccceecchhhHHhcchhh--cCcccchHHhHH
Confidence 34556666666667899999988888 46666311 022667777774 899999998764
No 299
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=24.71 E-value=1.6e+02 Score=22.40 Aligned_cols=34 Identities=18% Similarity=0.062 Sum_probs=26.2
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHccC-CCEEEEE
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSDK-GPILLET 36 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~~-gP~lie~ 36 (91)
...+|..|+.++|.++.++++..+... ..++|.+
T Consensus 43 ~~~~d~dD~~~~y~~l~~~l~~~~~~~~~~v~vDi 77 (379)
T PF09670_consen 43 IVIVDPDDPLECYRKLREVLEKLRDFPGHEVAVDI 77 (379)
T ss_pred EeeCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 456789999999999999999994433 3566654
No 300
>KOG2733|consensus
Probab=24.62 E-value=97 Score=24.22 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=22.7
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee-ecCCCCC
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSDKGPILLETAT-YRYSGHS 45 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~t-yR~~gHs 45 (91)
.+.+|++|...+-+-++.+ -++|.|.- ||++|-+
T Consensus 66 i~i~D~~n~~Sl~emak~~---------~vivN~vGPyR~hGE~ 100 (423)
T KOG2733|consen 66 ILIADSANEASLDEMAKQA---------RVIVNCVGPYRFHGEP 100 (423)
T ss_pred EEEecCCCHHHHHHHHhhh---------EEEEeccccceecCcH
Confidence 5667888887665544432 25777766 9999863
No 301
>PRK10867 signal recognition particle protein; Provisional
Probab=24.61 E-value=75 Score=24.78 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHc-cCCCEEEEEeeecCCCC
Q psy11439 15 REAARFAVNHCRS-DKGPILLETATYRYSGH 44 (91)
Q Consensus 15 ~~a~~~a~~~~R~-~~gP~lie~~tyR~~gH 44 (91)
--+++.|...... |..+.+|.+.|||...+
T Consensus 115 TtaakLA~~l~~~~G~kV~lV~~D~~R~aa~ 145 (433)
T PRK10867 115 TTAGKLAKYLKKKKKKKVLLVAADVYRPAAI 145 (433)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEccccchHHH
Confidence 3456677777777 88899999999987653
No 302
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=24.46 E-value=69 Score=25.30 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=17.2
Q ss_pred HHHHHHHHcCCCCHHHHhhhC
Q psy11439 71 SLKDKILNASLVTPEELKREL 91 (91)
Q Consensus 71 ~~~~~L~~~g~~~~~e~~~~~ 91 (91)
..++-++++|++|+++++.++
T Consensus 435 sv~evvLe~g~Lteeel~~Il 455 (471)
T COG1027 435 SVREVVLERGLLTEEELDDIL 455 (471)
T ss_pred cHHHHHHHhCCCCHHHHHHHh
Confidence 356668899999999999864
No 303
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=24.42 E-value=2.9e+02 Score=20.19 Aligned_cols=60 Identities=12% Similarity=0.111 Sum_probs=41.6
Q ss_pred ceEEeeC--CCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCC--CCCCCCHHHHHHHH
Q psy11439 2 ENKEVDG--MDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDP--GTSYRTRDEIQEVR 63 (91)
Q Consensus 2 ~~~~vDG--~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~--~~~Yr~~~e~~~~~ 63 (91)
.++.+|+ .+..+.++.+++.++.++..+-| +|+..-.+.|.....+ ...|.+++|.....
T Consensus 99 tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~--veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~ 162 (281)
T PRK06806 99 TSVMFDGSHLPLEENIQKTKEIVELAKQYGAT--VEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFA 162 (281)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCe--EEEEeeeECCccCCcccccceeCCHHHHHHHH
Confidence 4567776 56789999999999999998777 5776655554432211 22388898877653
No 304
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=24.31 E-value=90 Score=28.40 Aligned_cols=22 Identities=9% Similarity=0.012 Sum_probs=16.5
Q ss_pred HHHHHHHHccCCCEEEEEeeec
Q psy11439 19 RFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 19 ~~a~~~~R~~~gP~lie~~tyR 40 (91)
..|++.+.+.+||++||+.|-|
T Consensus 869 ~~aL~~a~~~~~p~lIEV~t~~ 890 (1655)
T PLN02980 869 EDALFTSQVEQMDCVVEVESSI 890 (1655)
T ss_pred HHHHHHhhccCCCEEEEEecCh
Confidence 4455555567999999999865
No 305
>PF03992 ABM: Antibiotic biosynthesis monooxygenase; InterPro: IPR007138 This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species, which can carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen. The structure of ActVA-Orf6 monooxygenase from Streptomyces coelicolor (Q53908 from SWISSPROT), which is involved in actinorhodin biosynthesis, reveals a dimeric alpha+beta barrel topology []. There is also a conserved histidine that is likely to be an active site residue. In S. coelicolor SCO1909 (Q9X9W3 from SWISSPROT) this domain occurs as a repeat. This domain is also found in protein LsrG, involved in the degradation of quorum-sensing molecule autoinducer-2 [], and in several uncharacterised proteins.; PDB: 1X7V_A 3F44_A 4DN9_B 1N5T_B 1LQ9_A 1N5Q_B 1N5V_A 1N5S_A 2GFF_B 3BM7_A ....
Probab=24.17 E-value=1.3e+02 Score=16.18 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=37.8
Q ss_pred EEeeCCCHHHHHHHHHHHHHHH-HccCCCEEEEEeeecCCCCCCCCCCC-----CCCCHHHHHHHHh
Q psy11439 4 KEVDGMDILAVREAARFAVNHC-RSDKGPILLETATYRYSGHSMSDPGT-----SYRTRDEIQEVRQ 64 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~-R~~~gP~lie~~tyR~~gHs~~D~~~-----~Yr~~~e~~~~~~ 64 (91)
+++-...-.++...++...... ++..| +|-...+| +..|+.. .|++.+.++.|.+
T Consensus 8 ~~v~~~~~~~f~~~~~~~~~~~~~~~~G--~~~~~~~~----~~~~~~~~~~~~~W~s~~a~~~~~~ 68 (78)
T PF03992_consen 8 FKVKPGKEEEFLAAFQELAEATLRKEPG--CLSYELYR----SLDDPNRYVIVERWESEEAFQAHFK 68 (78)
T ss_dssp EEEETTGHHHHHHHHHHHHHHHHHTSTT--EEEEEEEE----ESSSTTEEEEEEEESSHHHHHHHHT
T ss_pred EEeCcchHHHHHHHHHHHHHHHHhcCCC--cEEEEEEE----ecCCCCEEEEEEEECCHHHHHHHHc
Confidence 4455566678888888888877 45544 77777777 3344432 4889999999873
No 306
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=23.90 E-value=97 Score=20.63 Aligned_cols=22 Identities=5% Similarity=-0.043 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHccCCCEEEEEe
Q psy11439 16 EAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 16 ~a~~~a~~~~R~~~gP~lie~~ 37 (91)
+.+..++......++|++|+|.
T Consensus 85 ~~i~~~~~~~~~~g~~V~VHC~ 106 (166)
T PTZ00242 85 RLLDQEFAKQSTPPETIAVHCV 106 (166)
T ss_pred HHHHHHHHhhccCCCeEEEECC
Confidence 3333333333355999999993
No 307
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=23.46 E-value=1.7e+02 Score=17.24 Aligned_cols=42 Identities=17% Similarity=0.076 Sum_probs=30.6
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCC
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 46 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~ 46 (91)
+.+=|..|..+-+|+..|+.++++.= .-|-.+.+--.+||-.
T Consensus 9 IelvGtSp~S~d~Ai~~Ai~RA~~t~-~~l~wfeV~~~rg~v~ 50 (71)
T COG3360 9 IELVGTSPTSIDAAIANAIARAADTL-DNLDWFEVVETRGHVV 50 (71)
T ss_pred EEEEecCCccHHHHHHHHHHHHHhhh-hcceEEEEEeecccEe
Confidence 55669999999999999999999843 4444555555566643
No 308
>PHA03065 Hypothetical protein; Provisional
Probab=23.19 E-value=1.8e+02 Score=23.01 Aligned_cols=32 Identities=28% Similarity=0.265 Sum_probs=21.6
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEE
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILL 34 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~li 34 (91)
..+.+||.|.+=|. +++.--...+.|..|.+|
T Consensus 162 ~I~yCdgvDAEfvM-C~~ak~~a~~~g~WPl~i 193 (438)
T PHA03065 162 EIVYCDGVDAEFVM-CARAKELAATTGEWPLLI 193 (438)
T ss_pred eEEEECCcchhHHH-HHHHHHHHhhcCCCceEE
Confidence 46789999986443 222222345789999999
No 309
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=23.11 E-value=70 Score=17.01 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=12.0
Q ss_pred HHcCCCCHHHHhhhC
Q psy11439 77 LNASLVTPEELKREL 91 (91)
Q Consensus 77 ~~~g~~~~~e~~~~~ 91 (91)
++.|.+|++|.++++
T Consensus 27 V~~~~IT~eey~eIT 41 (45)
T TIGR01669 27 VEKKLITREQYKVIT 41 (45)
T ss_pred hhcCccCHHHHHHHh
Confidence 667889999888764
No 310
>COG2225 AceB Malate synthase [Energy production and conversion]
Probab=23.10 E-value=4.1e+02 Score=21.68 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=37.6
Q ss_pred ceEEeeCCCHHH-----HHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHH
Q psy11439 2 ENKEVDGMDILA-----VREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKI 76 (91)
Q Consensus 2 ~~~~vDG~D~~~-----v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L 76 (91)
|.+.+||+.+.+ +.-++-.+-+...+|+||.|. -|+ .=+++|..-|. |-..+.+..|
T Consensus 186 ~~i~~DG~~vp~~i~d~~l~~~~n~~~l~~rg~g~Yfy--------------lPK-m~~p~Ea~f~n---dvf~rvEd~L 247 (545)
T COG2225 186 PHITVDGEEVPEGIFDFVLYGLHNAHDLLARGGGPYFY--------------LPK-MEGPEEAAFWN---DVFSRVEDTL 247 (545)
T ss_pred ceEEecCccCcHHHHHHHHHHHHhhhhhhhccCceEEE--------------ecC-CCCHHHHHHHH---HHHHHHHHHc
Confidence 567889988743 333445555666789999998 233 55778887763 6666666655
No 311
>PF08920 SF3b1: Splicing factor 3B subunit 1; InterPro: IPR015016 This group of proteins consists of several eukaryotic splicing factor 3B subunit 1 proteins, which associate with p14 through a C terminus beta-strand that interacts with beta-3 of the p14 RNA recognition motif (RRM) beta-sheet, which is in turn connected to an alpha-helix by a loop that makes extensive contacts with both the shorter C-terminal helix and RRM of p14. This subunit is required for 'A' splicing complex assembly (formed by the stable binding of U2 snRNP to the branchpoint sequence in pre-mRNA) and 'E' splicing complex assembly []. ; PDB: 2FHO_A 3LQV_P 2PEH_D 2F9J_P 2F9D_Q.
Probab=22.99 E-value=96 Score=20.67 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=12.1
Q ss_pred HHHHHHH-cCCCCHHHHhhhC
Q psy11439 72 LKDKILN-ASLVTPEELKREL 91 (91)
Q Consensus 72 ~~~~L~~-~g~~~~~e~~~~~ 91 (91)
+.+.+-+ ..-||+|||+++|
T Consensus 76 ~~~eid~RNrpLTDEELD~mL 96 (144)
T PF08920_consen 76 WEKEIDERNRPLTDEELDAML 96 (144)
T ss_dssp HHHHHHHCTS-S-HHHHHHTS
T ss_pred cccchhhccCcCCHHHHHHhC
Confidence 4444444 3479999999875
No 312
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.87 E-value=1.2e+02 Score=23.92 Aligned_cols=22 Identities=0% Similarity=0.022 Sum_probs=15.1
Q ss_pred HHHHHHHHcc-CCCEEEEEeeec
Q psy11439 19 RFAVNHCRSD-KGPILLETATYR 40 (91)
Q Consensus 19 ~~a~~~~R~~-~gP~lie~~tyR 40 (91)
..|++.+.+. ++|+|||+.+-+
T Consensus 525 ~~al~~a~~~~~~p~lIev~i~~ 547 (572)
T PRK08979 525 ESGLEKALAMKDRLVFVDINVDE 547 (572)
T ss_pred HHHHHHHHhcCCCcEEEEEEeCC
Confidence 4455555443 889999998854
No 313
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=22.80 E-value=3.1e+02 Score=20.06 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=44.2
Q ss_pred ceEEeeC--CCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCC--CCCCCCCHHHHHHHH
Q psy11439 2 ENKEVDG--MDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSD--PGTSYRTRDEIQEVR 63 (91)
Q Consensus 2 ~~~~vDG--~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D--~~~~Yr~~~e~~~~~ 63 (91)
.++-+|| .++.+-.+.+++++++|+.-+ +.||+..=+..|..... ....|.++++.+.+-
T Consensus 94 tSVMiD~S~l~~eeNi~~t~~vv~~ah~~g--v~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv 157 (276)
T cd00947 94 SSVMIDGSHLPFEENVAKTKEVVELAHAYG--VSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFV 157 (276)
T ss_pred CEEEeCCCCCCHHHHHHHHHHHHHHHHHcC--CeEEEEEeeecCccCCcccccccCCCHHHHHHHH
Confidence 3566777 567888999999999999964 57788777777665331 123499999998875
No 314
>KOG0190|consensus
Probab=22.71 E-value=1.3e+02 Score=24.06 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=26.5
Q ss_pred HHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHH
Q psy11439 24 HCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEV 62 (91)
Q Consensus 24 ~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~ 62 (91)
.+...+..+|||.-+ +||||...=.+. | +|+...
T Consensus 379 iv~de~KdVLvEfyA-PWCgHCk~laP~-~---eeLAe~ 412 (493)
T KOG0190|consen 379 IVLDEGKDVLVEFYA-PWCGHCKALAPI-Y---EELAEK 412 (493)
T ss_pred HhhccccceEEEEcC-cccchhhhhhhH-H---HHHHHH
Confidence 567889999999988 799999877665 6 566543
No 315
>PRK10302 hypothetical protein; Provisional
Probab=22.58 E-value=1.2e+02 Score=22.25 Aligned_cols=31 Identities=16% Similarity=0.086 Sum_probs=20.5
Q ss_pred cCCCEEEEE----eeecCCCCCCCCCCCCCCCHHHHHHHH
Q psy11439 28 DKGPILLET----ATYRYSGHSMSDPGTSYRTRDEIQEVR 63 (91)
Q Consensus 28 ~~gP~lie~----~tyR~~gHs~~D~~~~Yr~~~e~~~~~ 63 (91)
++-|....+ ...|+.||+. .|.+.++++.|.
T Consensus 183 ~~~P~~~~~T~~~~yvRlhG~~~-----~~y~~~~L~~wa 217 (272)
T PRK10302 183 PKVPVHAVVTADNPLVRFIGSDD-----MAQNLELFQVWL 217 (272)
T ss_pred CCCCCCeecCCCcEEEEEeCCCC-----CCCCHHHHHHHH
Confidence 444554443 3479999983 145888999885
No 316
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=22.39 E-value=3.5e+02 Score=20.42 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=43.8
Q ss_pred ceEEeeC--CCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCC--CCCCCCCCHHHHHHHH
Q psy11439 2 ENKEVDG--MDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS--DPGTSYRTRDEIQEVR 63 (91)
Q Consensus 2 ~~~~vDG--~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~--D~~~~Yr~~~e~~~~~ 63 (91)
.++-+|| .++.+-.+.+++++++|+..+ +-||+..=++.|-... +....|.+++|...+-
T Consensus 110 tSVMiD~S~lp~eeNI~~T~evv~~Ah~~G--vsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv 173 (321)
T PRK07084 110 SSVMIDGSHLPYEENVALTKKVVEYAHQFD--VTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFV 173 (321)
T ss_pred CEEEeeCCCCCHHHHHHHHHHHHHHHHHcC--CeEEEEEeeecCccCCccCcccccCCHHHHHHHH
Confidence 3566777 577888999999999999866 6788888777654322 1123499999988774
No 317
>COG5499 Predicted transcription regulator containing HTH domain [Transcription]
Probab=22.12 E-value=1.3e+02 Score=19.46 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=20.7
Q ss_pred CCChHHHHHHHHHHcCCCCHHHHhhh
Q psy11439 65 TRDPISSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 65 ~~DPi~~~~~~L~~~g~~~~~e~~~~ 90 (91)
..||+...+..|-..| +|..++..+
T Consensus 58 aP~pve~I~t~Md~~g-lt~~dLa~~ 82 (120)
T COG5499 58 APDPVEVIRTLMDQYG-LTLADLANE 82 (120)
T ss_pred cCCHHHHHHHHHHHhC-CcHHHHHHH
Confidence 5899999999888777 688888754
No 318
>PF08921 DUF1904: Domain of unknown function (DUF1904); InterPro: IPR015017 This entry represents a family of hypothetical bacterial proteins. ; PDB: 1U9D_B.
Probab=21.85 E-value=2e+02 Score=18.10 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=21.8
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHH----HccCCCEEEEEe
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHC----RSDKGPILLETA 37 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~----R~~~gP~lie~~ 37 (91)
||.+++-|.+...|....+..++.. ....--+.||+.
T Consensus 1 MPhlr~rGi~~e~v~~~S~~LideLa~i~~~p~e~ftlE~i 41 (108)
T PF08921_consen 1 MPHLRFRGIEEEQVQELSKELIDELAEICGCPRENFTLEWI 41 (108)
T ss_dssp --EEEEESS-HHHHHHHHHHHHHHHHHHHT--GGG-EEEE-
T ss_pred CCeEEEecCCHHHHHHHhHHHHHHHHHHHCCCcceEEEEEe
Confidence 8999999999999988887755433 333334566653
No 319
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=21.71 E-value=60 Score=15.76 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=9.1
Q ss_pred HHcCCCCHHHHhhh
Q psy11439 77 LNASLVTPEELKRE 90 (91)
Q Consensus 77 ~~~g~~~~~e~~~~ 90 (91)
+.+.-+|++|+.+-
T Consensus 11 V~eh~ls~ee~~~R 24 (28)
T PF12368_consen 11 VKEHGLSEEEVAER 24 (28)
T ss_pred HHhcCCCHHHHHHH
Confidence 44455788887653
No 320
>PRK12361 hypothetical protein; Provisional
Probab=21.61 E-value=1.2e+02 Score=23.90 Aligned_cols=26 Identities=8% Similarity=0.054 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHccCCCEEEEEeeecCCCCC
Q psy11439 16 EAARFAVNHCRSDKGPILLETATYRYSGHS 45 (91)
Q Consensus 16 ~a~~~a~~~~R~~~gP~lie~~tyR~~gHs 45 (91)
..+-..++.+++.+++++|+| ..|+|
T Consensus 162 ~~a~~~i~~~~~~~~~VlVHC----~~G~s 187 (547)
T PRK12361 162 NQAINWIHRQVRANKSVVVHC----ALGRG 187 (547)
T ss_pred HHHHHHHHHHHHCCCeEEEEC----CCCCC
Confidence 334445556667788999999 45665
No 321
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=21.25 E-value=3.8e+02 Score=20.45 Aligned_cols=60 Identities=10% Similarity=0.039 Sum_probs=42.8
Q ss_pred ceEEeeCC---------CHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCC----------CCC----CCCCCCHHH
Q psy11439 2 ENKEVDGM---------DILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM----------SDP----GTSYRTRDE 58 (91)
Q Consensus 2 ~~~~vDG~---------D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~----------~D~----~~~Yr~~~e 58 (91)
.++-+||. ++++-.+.+++++++|+..+ +-||+..=++.|-.. .+. ...|.+|+|
T Consensus 100 tSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~G--v~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~Pee 177 (347)
T PRK09196 100 TSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACG--VSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEE 177 (347)
T ss_pred CEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcC--CeEEEEEeeccCccccccccccCcccccccchhhcCCCHHH
Confidence 45667776 78999999999999998865 678888767654321 010 234999998
Q ss_pred HHHHH
Q psy11439 59 IQEVR 63 (91)
Q Consensus 59 ~~~~~ 63 (91)
...+-
T Consensus 178 A~~Fv 182 (347)
T PRK09196 178 AADFV 182 (347)
T ss_pred HHHHH
Confidence 87764
No 322
>PF06985 HET: Heterokaryon incompatibility protein (HET); InterPro: IPR010730 This entry represents a conserved region approximately 150 residues long within various heterokaryon incompatibility proteins that seem to be restricted to ascomycete fungi. Genetic differences in specific het genes prevent a viable heterokaryotic fungal cell from being formed by the fusion of filaments from two different wild-type strains []. Many proteins of this entry also contain the WD domain, G-beta IPR001680 from INTERPRO repeat and the NACHT IPR007111 from INTERPRO domain.
Probab=21.23 E-value=1.4e+02 Score=18.14 Aligned_cols=33 Identities=30% Similarity=0.257 Sum_probs=24.1
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
.+.++| ....+...+..|+..+|+ .|+-.|.+.
T Consensus 16 ~i~~~~-~~~~~~~~l~~al~~~r~-~~~~ylWID 48 (139)
T PF06985_consen 16 PIPVDG-DPLSLPENLQDALRIARA-LGIRYLWID 48 (139)
T ss_pred eeeeCC-cccchhHHHHHHHHHhhc-ccceeeecC
Confidence 345666 777888999999999998 555555554
No 323
>PRK13662 hypothetical protein; Provisional
Probab=20.78 E-value=1.3e+02 Score=20.77 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHccCCCE
Q psy11439 13 AVREAARFAVNHCRSDKGPI 32 (91)
Q Consensus 13 ~v~~a~~~a~~~~R~~~gP~ 32 (91)
.+.++++.+++.++++++|+
T Consensus 140 ~v~~~~~~l~~~i~~~~~PF 159 (177)
T PRK13662 140 ILKENVKILVDWINQKKGPF 159 (177)
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 45666677788888888874
No 324
>PRK15025 ureidoglycolate dehydrogenase; Provisional
Probab=20.71 E-value=3.1e+02 Score=20.77 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=29.1
Q ss_pred eEEeeCCC---HHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCC
Q psy11439 3 NKEVDGMD---ILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS 47 (91)
Q Consensus 3 ~~~vDG~D---~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~ 47 (91)
+..|||.+ ......++..|++.+|+.+ = =+.+-|-..|...
T Consensus 76 ~a~vDg~~g~G~~a~~~Am~~aiekA~~~G-i---~~v~vrnS~H~G~ 119 (349)
T PRK15025 76 SAILHADNAAGQVAAKMGMEHAIETAKQNG-V---AVVGISRMGHSGA 119 (349)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHHHHhC-E---EEEEEeCCCcccc
Confidence 35688766 4778899999999999965 2 3334466667654
No 325
>PF09893 DUF2120: Uncharacterized protein conserved in archaea (DUF2120); InterPro: IPR014515 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.69 E-value=70 Score=21.49 Aligned_cols=13 Identities=38% Similarity=0.713 Sum_probs=10.5
Q ss_pred HccCCCEEEEEee
Q psy11439 26 RSDKGPILLETAT 38 (91)
Q Consensus 26 R~~~gP~lie~~t 38 (91)
+.+.+|.|+|+.+
T Consensus 133 k~~~~P~FVEvvv 145 (146)
T PF09893_consen 133 KSGKGPKFVEVVV 145 (146)
T ss_pred ccCCCCceEEEEe
Confidence 5688999999864
No 326
>COG4077 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.69 E-value=86 Score=21.00 Aligned_cols=14 Identities=43% Similarity=0.684 Sum_probs=11.9
Q ss_pred HccCCCEEEEEeee
Q psy11439 26 RSDKGPILLETATY 39 (91)
Q Consensus 26 R~~~gP~lie~~ty 39 (91)
|+|.||-|+|+..-
T Consensus 139 rsg~gPkfVE~vv~ 152 (156)
T COG4077 139 RSGKGPKFVEVVVV 152 (156)
T ss_pred cCCCCCceEEEEee
Confidence 78999999998764
No 327
>PF05209 MinC_N: Septum formation inhibitor MinC, N-terminal domain; InterPro: IPR007874 In Escherichia coli FtsZ (P0A9A6 from SWISSPROT) assembles into a Z ring at midcell. Its assembly at polar sites is prevented by the min system. MinC P18196 from SWISSPROT, a component of this system, is an inhibitor of FtsZ assembly that is positioned within the cell by interaction with the MinDE proteins. MinC is an oligomer, probably a dimer []. The C-terminal half of MinC is the most conserved and interacts with MinD. The N-terminal half is thought to interact with FtsZ. MinC rapidly oscillates between the poles of the cell to destabilise FtsZ filaments that have formed before they mature into polar Z rings; GO: 0051302 regulation of cell division; PDB: 3GHF_A 1HF2_C.
Probab=20.51 E-value=2.1e+02 Score=17.17 Aligned_cols=38 Identities=11% Similarity=0.189 Sum_probs=30.4
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHc--cCCCEEEEEeee
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRS--DKGPILLETATY 39 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~--~~gP~lie~~ty 39 (91)
..++++-.|+.++.++..+-++.+-. .+.|++|.+.-.
T Consensus 16 ~vl~l~~~d~~~l~~~L~~ki~~ap~FF~~~pvvldl~~l 55 (99)
T PF05209_consen 16 LVLRLRSADLDELLQALDEKIAQAPDFFKNAPVVLDLSNL 55 (99)
T ss_dssp EEEEECSS-HHHHHHHHHHHHHHTHHHCTTTEEEEEEEEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHHhChHhHcCCCeEEehhhc
Confidence 35778889999999999998888887 377999998643
No 328
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=20.48 E-value=85 Score=22.64 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHccCCCEEEEEeeecCC
Q psy11439 14 VREAARFAVNHCRSDKGPILLETATYRYS 42 (91)
Q Consensus 14 v~~a~~~a~~~~R~~~gP~lie~~tyR~~ 42 (91)
.--+++-|...++.|....||.+.+||..
T Consensus 86 TTt~akLA~~l~~~g~~V~li~~D~~r~~ 114 (272)
T TIGR00064 86 TTTIAKLANKLKKQGKSVLLAAGDTFRAA 114 (272)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCCCCHH
Confidence 34456667767777888889988887764
No 329
>PRK11032 hypothetical protein; Provisional
Probab=20.45 E-value=1.5e+02 Score=20.05 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCCCHHHHhh
Q psy11439 69 ISSLKDKILNASLVTPEELKR 89 (91)
Q Consensus 69 i~~~~~~L~~~g~~~~~e~~~ 89 (91)
|...++++.+.|-+|++|++.
T Consensus 30 ve~a~~~~~~~~elT~dEl~l 50 (160)
T PRK11032 30 VESARKRVDAAGELTRDEVDL 50 (160)
T ss_pred HHHHHHHHHHHHhcCHHHHHH
Confidence 777899999999999998864
No 330
>cd08809 CARD_CARD9 Caspase activation and recruitment domain of CARD9-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD9. CARD9 is a central regulator of innate immunity and is highly expressed in dendritic cells and macrophages. Together with BCL10 (B-cell lymphoma 10) and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), it forms the M-CBM signalosome (the CBM complex in myeloid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. CARD9 associates with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating wi
Probab=20.20 E-value=67 Score=19.70 Aligned_cols=20 Identities=0% Similarity=0.164 Sum_probs=15.9
Q ss_pred HHHHHHHHcCCCCHHHHhhh
Q psy11439 71 SLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 71 ~~~~~L~~~g~~~~~e~~~~ 90 (91)
+.-.+|...|++++++++++
T Consensus 20 rl~pyLrQ~~Vl~~~deEeI 39 (86)
T cd08809 20 RITPYLRQCKVLNSDDEEQV 39 (86)
T ss_pred hcChHHHHhCCCChhhHHHH
Confidence 34567899999999888765
No 331
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=20.18 E-value=3.6e+02 Score=19.81 Aligned_cols=60 Identities=13% Similarity=0.152 Sum_probs=43.4
Q ss_pred ceEEeeC--CCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCC--CCCCCCCCHHHHHHHH
Q psy11439 2 ENKEVDG--MDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS--DPGTSYRTRDEIQEVR 63 (91)
Q Consensus 2 ~~~~vDG--~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~--D~~~~Yr~~~e~~~~~ 63 (91)
.++=+|| .++.+=.+.+++++++|+.-+ +-||+..=+..|-... +....|.+|+|...+-
T Consensus 102 tSVM~DgS~lp~eeNi~~Trevv~~Ah~~g--v~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv 165 (285)
T PRK07709 102 TSVMIDASHHPFEENVETTKKVVEYAHARN--VSVEAELGTVGGQEDDVIAEGVIYADPAECKHLV 165 (285)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHHcC--CEEEEEEeccCCccCCcccccccCCCHHHHHHHH
Confidence 4566787 578889999999999999865 4678877777653221 1123499999988774
No 332
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=20.18 E-value=3.5e+02 Score=20.72 Aligned_cols=43 Identities=7% Similarity=0.035 Sum_probs=35.0
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHc--cCCCEEEEEeeecCCCCCCC
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRS--DKGPILLETATYRYSGHSMS 47 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~--~~gP~lie~~tyR~~gHs~~ 47 (91)
+.+=..|+.+++..+..|.+.+.+ -.-|+++-..+||. +|+..
T Consensus 133 ~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~-sH~~e 177 (394)
T PRK08367 133 MQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFIL-THTVE 177 (394)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhh-cCccc
Confidence 344568999999999999999995 44899999999996 46543
No 333
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=20.16 E-value=1.3e+02 Score=23.07 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHccCCC--EEEEEee
Q psy11439 16 EAARFAVNHCRSDKGP--ILLETAT 38 (91)
Q Consensus 16 ~a~~~a~~~~R~~~gP--~lie~~t 38 (91)
.-...|++.+|+.+.| +|++|.+
T Consensus 160 ~ei~~av~~~r~~g~~~i~LLhC~s 184 (347)
T COG2089 160 EEIEEAVAILRENGNPDIALLHCTS 184 (347)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEecC
Confidence 4457788899999999 8888864
Done!