Query psy11439
Match_columns 91
No_of_seqs 154 out of 1064
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 18:30:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ozl_A PDHE1-A type I, pyruvat 100.0 1.1E-28 3.9E-33 182.8 11.8 90 1-90 224-313 (365)
2 1w85_A Pyruvate dehydrogenase 99.9 1.7E-27 6E-32 176.4 12.4 89 1-90 228-317 (368)
3 1qs0_A 2-oxoisovalerate dehydr 99.9 4.2E-27 1.4E-31 176.4 9.8 89 1-90 268-356 (407)
4 1umd_A E1-alpha, 2-OXO acid de 99.9 1E-25 3.5E-30 166.5 12.0 89 1-90 230-318 (367)
5 2bfd_A 2-oxoisovalerate dehydr 99.9 4.8E-26 1.6E-30 170.2 8.9 89 1-89 248-336 (400)
6 2yic_A 2-oxoglutarate decarbox 99.9 2.8E-25 9.5E-30 178.5 11.3 89 1-90 345-433 (868)
7 2xt6_A 2-oxoglutarate decarbox 99.9 6.8E-25 2.3E-29 179.6 11.0 89 1-90 590-678 (1113)
8 2jgd_A 2-oxoglutarate dehydrog 99.9 1.6E-23 5.5E-28 169.3 9.1 89 1-90 417-505 (933)
9 4feg_A Pyruvate oxidase; carba 99.2 2.4E-11 8.3E-16 93.9 6.4 80 1-87 511-597 (603)
10 1gpu_A Transketolase; transfer 98.9 1.7E-09 5.8E-14 85.1 7.0 65 1-69 212-281 (680)
11 2e6k_A Transketolase; structur 98.8 3.1E-09 1E-13 83.3 4.2 63 1-69 214-281 (651)
12 2r8o_A Transketolase 1, TK 1; 98.8 2.1E-08 7.2E-13 78.8 8.5 61 1-64 210-275 (669)
13 1r9j_A Transketolase; domains, 98.5 3E-07 1E-11 72.3 8.4 60 2-64 213-277 (673)
14 3rim_A Transketolase, TK; TPP, 98.3 2.2E-06 7.7E-11 67.9 8.0 60 1-63 232-296 (700)
15 1itz_A Transketolase; calvin c 98.2 4.2E-06 1.4E-10 65.8 7.4 59 2-63 224-288 (675)
16 3uk1_A Transketolase; structur 98.0 8.9E-06 3E-10 64.6 6.6 43 1-47 251-294 (711)
17 3mos_A Transketolase, TK; thia 98.0 6.7E-06 2.3E-10 64.1 5.2 45 1-51 209-253 (616)
18 2qtc_A Pyruvate dehydrogenase 98.0 3.6E-06 1.2E-10 68.2 3.4 58 4-64 359-422 (886)
19 3kom_A Transketolase; rossmann 97.9 2.5E-05 8.6E-10 61.5 6.4 43 1-47 212-256 (663)
20 3l84_A Transketolase; TKT, str 97.8 3.3E-05 1.1E-09 60.6 6.7 43 1-47 207-249 (632)
21 3m49_A Transketolase; alpha-be 97.6 0.00012 4.2E-09 57.9 6.0 41 2-46 237-279 (690)
22 2o1s_A 1-deoxy-D-xylulose-5-ph 97.6 9.3E-05 3.2E-09 57.5 5.2 40 3-46 250-290 (621)
23 2o1x_A 1-deoxy-D-xylulose-5-ph 97.3 0.00023 8E-09 55.4 4.8 40 2-45 254-294 (629)
24 2pan_A Glyoxylate carboligase; 95.1 0.019 6.6E-07 44.1 4.0 40 1-42 543-582 (616)
25 1v5e_A Pyruvate oxidase; oxido 94.3 0.066 2.3E-06 41.0 5.3 39 1-42 503-541 (590)
26 1q6z_A BFD, BFDC, benzoylforma 92.2 0.11 3.8E-06 39.0 3.5 33 2-40 493-525 (528)
27 2iht_A Carboxyethylarginine sy 89.7 0.34 1.1E-05 36.9 4.0 33 2-40 529-561 (573)
28 3hww_A 2-succinyl-5-enolpyruvy 89.0 0.25 8.7E-06 37.5 2.9 33 2-40 507-539 (556)
29 3eya_A Pyruvate dehydrogenase 88.3 0.57 1.9E-05 35.4 4.4 35 2-42 497-531 (549)
30 1ozh_A ALS, acetolactate synth 87.9 0.44 1.5E-05 36.2 3.6 34 2-41 511-544 (566)
31 2c31_A Oxalyl-COA decarboxylas 87.9 0.65 2.2E-05 35.2 4.5 35 2-42 515-549 (568)
32 1ybh_A Acetolactate synthase, 87.9 0.73 2.5E-05 35.2 4.8 36 2-43 526-561 (590)
33 2uz1_A Benzaldehyde lyase; thi 87.5 0.88 3E-05 34.4 5.0 33 2-40 514-546 (563)
34 2kl8_A OR15; structural genomi 86.8 1.1 3.8E-05 25.6 4.0 36 4-44 5-40 (85)
35 1t9b_A Acetolactate synthase, 86.4 0.97 3.3E-05 35.4 4.8 35 2-42 605-639 (677)
36 1ovm_A Indole-3-pyruvate decar 86.3 0.82 2.8E-05 34.4 4.3 33 2-40 500-532 (552)
37 2vbi_A Pyruvate decarboxylase; 86.2 0.73 2.5E-05 34.9 4.0 33 2-40 500-533 (566)
38 2vbf_A Branched-chain alpha-ke 86.1 1.1 3.8E-05 34.0 4.9 33 3-40 519-551 (570)
39 2q28_A Oxalyl-COA decarboxylas 85.5 1.1 3.6E-05 33.9 4.6 35 2-42 512-546 (564)
40 2pgn_A Cyclohexane-1,2-dione h 84.6 0.7 2.4E-05 35.3 3.2 35 2-42 515-549 (589)
41 3ahc_A Phosphoketolase, xylulo 83.5 2.1 7E-05 34.9 5.6 38 5-42 267-322 (845)
42 2nxw_A Phenyl-3-pyruvate decar 83.3 1.4 4.8E-05 33.4 4.4 33 2-40 509-542 (565)
43 2wvg_A PDC, pyruvate decarboxy 83.2 1.3 4.5E-05 33.5 4.2 34 2-40 508-541 (568)
44 2vk8_A Pyruvate decarboxylase 80.6 0.82 2.8E-05 34.6 2.2 33 3-40 509-542 (563)
45 3lq1_A 2-succinyl-5-enolpyruvy 80.4 1.2 4.1E-05 33.9 3.1 33 2-40 528-560 (578)
46 4hhu_A OR280; engineered prote 79.2 3.7 0.00013 26.2 4.6 30 3-32 5-34 (170)
47 4hhu_A OR280; engineered prote 79.1 3.7 0.00013 26.2 4.6 37 3-44 86-122 (170)
48 2x7j_A 2-succinyl-5-enolpyruvy 73.5 0.88 3E-05 34.8 0.6 33 2-40 548-580 (604)
49 4fm4_B NitrIle hydratase beta 64.8 5.4 0.00018 27.1 3.0 21 70-90 74-94 (206)
50 3ff5_A PEX14P, peroxisomal bio 63.0 5.2 0.00018 21.6 2.2 25 66-91 27-51 (54)
51 2zzd_B Thiocyanate hydrolase s 62.4 6.6 0.00023 25.7 3.0 21 69-89 113-133 (157)
52 3ezz_A Dual specificity protei 61.0 5 0.00017 24.4 2.2 26 12-37 64-89 (144)
53 3s4e_A Dual specificity protei 61.0 5.1 0.00017 24.5 2.2 28 10-37 62-89 (144)
54 3emu_A Leucine rich repeat and 59.4 7.4 0.00025 24.5 2.8 28 10-37 68-95 (161)
55 2hcm_A Dual specificity protei 58.9 8.7 0.0003 23.9 3.1 28 10-37 70-97 (164)
56 2iht_A Carboxyethylarginine sy 58.0 8 0.00027 29.2 3.2 30 8-37 139-169 (573)
57 2wvg_A PDC, pyruvate decarboxy 57.7 7.3 0.00025 29.4 2.9 29 9-37 139-167 (568)
58 2fb0_A Conserved hypothetical 57.2 23 0.00077 19.6 7.7 67 4-77 11-82 (94)
59 2w84_A Peroxisomal membrane pr 57.2 7.2 0.00025 22.2 2.2 24 66-90 32-55 (70)
60 3qyh_B CO-type nitrIle hydrata 56.5 9 0.00031 26.3 3.0 21 70-90 74-94 (219)
61 3a8g_B NitrIle hydratase subun 56.2 9.3 0.00032 26.1 3.0 20 70-89 78-97 (212)
62 1zzw_A Dual specificity protei 55.6 10 0.00034 23.1 2.9 28 10-37 64-91 (149)
63 2gff_A LSRG protein; dimeric a 55.5 27 0.00092 19.9 6.4 66 4-76 8-78 (106)
64 3hht_B NitrIle hydratase beta 55.4 9.6 0.00033 26.3 3.0 20 70-89 78-97 (229)
65 1ugp_B NitrIle hydratase beta 55.0 10 0.00035 26.1 3.1 21 69-89 73-93 (226)
66 4dpo_A Conserved protein; stru 53.8 33 0.0011 20.4 6.3 68 4-78 32-104 (119)
67 2uz1_A Benzaldehyde lyase; thi 53.5 12 0.00039 28.3 3.4 29 8-36 132-161 (563)
68 2b3g_B Cellular tumor antigen 53.2 6.3 0.00021 18.2 1.2 17 53-70 12-28 (28)
69 2vbi_A Pyruvate decarboxylase; 52.9 6.8 0.00023 29.5 2.1 28 10-37 140-167 (566)
70 1ozh_A ALS, acetolactate synth 52.7 10 0.00036 28.6 3.1 30 8-37 138-168 (566)
71 2e0t_A Dual specificity phosph 52.6 13 0.00046 22.5 3.1 23 15-37 70-93 (151)
72 2nt2_A Protein phosphatase sli 52.2 5.9 0.0002 24.2 1.4 21 17-37 69-89 (145)
73 1ybh_A Acetolactate synthase, 51.5 17 0.00057 27.6 4.0 29 8-36 140-169 (590)
74 3eya_A Pyruvate dehydrogenase 50.6 11 0.00037 28.4 2.9 28 9-36 132-159 (549)
75 2vk8_A Pyruvate decarboxylase 50.4 9.9 0.00034 28.6 2.6 29 9-37 140-168 (563)
76 2nxw_A Phenyl-3-pyruvate decar 50.1 10 0.00035 28.6 2.7 29 9-37 156-184 (565)
77 3e8o_A Uncharacterized protein 50.0 38 0.0013 20.0 7.5 68 4-78 26-98 (119)
78 3f81_A Dual specificity protei 49.7 9.5 0.00033 24.1 2.1 27 11-37 96-123 (183)
79 3cm3_A Late protein H1, dual s 49.1 7.9 0.00027 24.5 1.7 22 16-37 95-116 (176)
80 2hxp_A Dual specificity protei 49.1 12 0.00042 23.1 2.6 27 11-37 67-93 (155)
81 3rgo_A Protein-tyrosine phosph 48.9 8.1 0.00028 23.5 1.7 27 11-37 71-97 (157)
82 1x7v_A PA3566 protein, APC5058 48.8 33 0.0011 19.0 6.0 64 4-74 13-81 (99)
83 1yz4_A DUSP15, dual specificit 48.8 9.4 0.00032 23.7 2.0 22 16-37 71-92 (160)
84 2pgn_A Cyclohexane-1,2-dione h 48.2 18 0.00061 27.4 3.8 30 7-36 132-162 (589)
85 2omo_A DUF176; structural geno 47.9 42 0.0014 20.0 6.2 67 4-77 30-101 (124)
86 1q8b_A Protein YJCS; structura 47.6 38 0.0013 19.4 5.2 62 4-72 20-87 (105)
87 2bbe_A Hypothetical protein SO 47.1 39 0.0013 19.3 6.9 66 4-76 20-91 (108)
88 2p1h_A APAF-1, apoptotic prote 45.9 18 0.0006 20.7 2.7 22 69-90 24-45 (94)
89 2q05_A Late protein H1, dual s 45.9 11 0.00036 24.5 2.0 23 15-37 111-133 (195)
90 2r0b_A Serine/threonine/tyrosi 45.1 7.1 0.00024 23.9 0.9 22 16-37 77-98 (154)
91 2esb_A Dual specificity protei 44.2 12 0.00042 24.0 2.1 25 13-37 81-105 (188)
92 3ctv_A HBD-10, 3-hydroxyacyl-C 44.0 23 0.00079 20.9 3.1 24 67-90 25-48 (110)
93 2q28_A Oxalyl-COA decarboxylas 43.7 18 0.0006 27.2 3.1 28 9-36 138-166 (564)
94 3s4o_A Protein tyrosine phosph 43.4 27 0.00092 21.2 3.5 24 14-37 90-117 (167)
95 1y0h_A Hypothetical protein RV 43.2 42 0.0014 18.7 4.7 63 5-75 13-80 (102)
96 2j16_A SDP-1, tyrosine-protein 42.8 14 0.00048 24.0 2.1 29 9-37 97-125 (182)
97 2oud_A Dual specificity protei 42.2 22 0.00074 22.5 3.0 27 11-37 69-95 (177)
98 4erc_A Dual specificity protei 41.9 24 0.00081 21.1 3.0 24 14-37 73-96 (150)
99 1q6z_A BFD, BFDC, benzoylforma 41.5 22 0.00076 26.4 3.3 29 9-37 130-159 (528)
100 1wrm_A Dual specificity phosph 41.3 11 0.00036 23.6 1.3 19 19-37 73-91 (165)
101 4feg_A Pyruvate oxidase; carba 40.4 14 0.00049 28.1 2.2 28 9-36 141-168 (603)
102 1t9b_A Acetolactate synthase, 40.2 31 0.0011 26.9 4.0 30 8-37 210-240 (677)
103 3qyh_A CO-type nitrIle hydrata 40.2 17 0.00057 25.1 2.2 21 70-90 41-61 (226)
104 2c31_A Oxalyl-COA decarboxylas 39.8 22 0.00075 26.7 3.1 28 9-36 140-168 (568)
105 2pd1_A Hypothetical protein; u 39.7 50 0.0017 18.5 7.3 65 4-77 12-81 (104)
106 2pan_A Glyoxylate carboligase; 39.7 25 0.00084 26.8 3.4 28 9-36 157-185 (616)
107 2xf7_A GP23.1; viral protein; 39.2 19 0.00064 18.9 1.8 30 60-90 12-41 (51)
108 2zzd_C Thiocyanate hydrolase s 39.2 19 0.00066 25.0 2.4 20 71-90 33-52 (243)
109 2img_A Dual specificity protei 38.8 33 0.0011 20.4 3.3 20 18-37 78-97 (151)
110 1v5e_A Pyruvate oxidase; oxido 37.8 24 0.00083 26.8 3.0 33 7-41 132-165 (590)
111 3gz7_A Putative antibiotic bio 37.6 64 0.0022 19.1 6.3 66 4-76 27-98 (115)
112 3ygs_P Procaspase 9; apoptosis 37.4 21 0.00072 20.8 2.2 19 72-90 26-44 (97)
113 2isw_A Putative fructose-1,6-b 36.8 1.2E+02 0.004 21.9 7.6 60 2-63 100-162 (323)
114 3hht_A NitrIle hydratase alpha 36.6 23 0.00079 24.3 2.5 22 69-90 29-50 (216)
115 2y96_A Dual specificity phosph 36.2 20 0.0007 23.7 2.2 19 19-37 128-147 (219)
116 1yd7_A 2-keto acid:ferredoxin 36.1 45 0.0016 24.1 4.2 41 4-46 153-193 (395)
117 3g36_A Protein DPY-30 homolog; 35.5 31 0.0011 18.4 2.5 22 58-80 27-48 (55)
118 2wgp_A Dual specificity protei 35.5 20 0.00068 23.1 2.0 22 16-37 90-111 (190)
119 3gxh_A Putative phosphatase (D 35.1 28 0.00096 21.6 2.6 31 4-37 73-105 (157)
120 3hva_A Protein FIMX; ggdef dig 34.5 63 0.0022 19.4 4.2 26 7-32 145-170 (177)
121 2vbf_A Branched-chain alpha-ke 34.3 30 0.001 26.0 3.0 26 12-37 163-188 (570)
122 1ugp_A NitrIle hydratase alpha 34.3 27 0.00093 23.7 2.5 22 69-90 20-41 (203)
123 2dlx_A UBX domain-containing p 34.1 27 0.00093 22.0 2.4 21 18-38 31-51 (153)
124 1tuv_A Protein YGIN; menadione 33.5 73 0.0025 18.5 7.2 70 4-76 8-88 (114)
125 1rvg_A Fructose-1,6-bisphospha 33.2 1.3E+02 0.0045 21.4 8.2 60 2-63 97-162 (305)
126 3ign_A Diguanylate cyclase; gg 33.0 48 0.0016 20.0 3.5 27 7-33 140-166 (177)
127 3icl_A EAL/ggdef domain protei 32.8 54 0.0018 19.6 3.7 27 7-33 131-157 (171)
128 1xri_A AT1G05000; structural g 32.5 37 0.0013 20.4 2.8 21 17-37 79-100 (151)
129 4axi_A EUTS, ethanolamine carb 31.9 36 0.0012 21.3 2.7 26 4-30 83-108 (125)
130 3lq1_A 2-succinyl-5-enolpyruvy 31.8 61 0.0021 24.4 4.4 24 14-37 152-176 (578)
131 2g6z_A Dual specificity protei 31.6 25 0.00087 23.3 2.1 23 15-37 69-91 (211)
132 3iv3_A Tagatose 1,6-diphosphat 31.4 73 0.0025 23.0 4.6 29 13-41 144-172 (332)
133 3crd_A Raidd; caspase recruitm 31.3 26 0.0009 20.4 1.9 19 72-90 26-44 (100)
134 3lqv_P Splicing factor 3B subu 31.3 54 0.0019 16.4 3.0 20 72-91 12-32 (39)
135 3qyy_A Response regulator; C-D 31.0 71 0.0024 19.1 4.0 28 7-34 137-164 (167)
136 3glc_A Aldolase LSRF; TIM barr 30.5 1.4E+02 0.0048 20.9 6.0 36 8-46 150-185 (295)
137 3ph9_A Anterior gradient prote 30.2 40 0.0014 21.0 2.7 20 18-37 33-52 (151)
138 3bm7_A Protein of unknown func 29.9 85 0.0029 18.2 6.7 66 4-76 27-98 (115)
139 1ovm_A Indole-3-pyruvate decar 29.9 39 0.0013 25.2 3.0 26 12-37 143-168 (552)
140 4hl9_A Antibiotic biosynthesis 29.3 70 0.0024 19.1 3.7 66 4-76 30-100 (118)
141 2x7j_A 2-succinyl-5-enolpyruvy 29.0 55 0.0019 24.8 3.7 24 14-37 172-196 (604)
142 3cgi_A Propanediol utilization 28.2 51 0.0018 20.4 2.9 38 4-44 82-120 (124)
143 2job_A Antilipopolysaccharide 28.1 51 0.0018 19.9 2.8 23 67-89 76-98 (102)
144 3a8g_A NitrIle hydratase subun 28.0 24 0.00083 24.0 1.4 20 71-90 25-44 (207)
145 2c42_A Pyruvate-ferredoxin oxi 27.6 53 0.0018 27.7 3.7 26 9-38 1043-1068(1231)
146 1m5s_A Formylmethanofuran--tet 26.9 85 0.0029 22.5 4.1 28 3-30 246-273 (297)
147 1m5h_A Formylmethanofuran--tet 26.8 85 0.0029 22.4 4.1 28 3-30 246-273 (297)
148 1ftr_A FTR, formylmethanofuran 26.5 85 0.0029 22.4 4.1 28 3-30 245-272 (296)
149 1wv8_A TT1413, hypothetical pr 26.5 88 0.003 17.7 3.5 41 1-41 24-69 (73)
150 4fm4_A NitrIle hydratase alpha 25.9 31 0.0011 23.5 1.7 21 70-90 14-34 (209)
151 2f46_A Hypothetical protein; s 25.9 55 0.0019 20.1 2.8 16 22-37 95-110 (156)
152 1to3_A Putative aldolase YIHT; 25.7 1.1E+02 0.0038 21.4 4.7 30 11-40 137-166 (304)
153 1vk8_A Hypothetical protein TM 25.7 49 0.0017 20.0 2.4 37 5-42 57-94 (106)
154 1rxd_A Protein tyrosine phosph 25.6 1.1E+02 0.0037 18.1 4.1 26 12-37 78-104 (159)
155 2pq5_A Dual specificity protei 24.9 46 0.0016 21.5 2.4 16 22-37 123-139 (205)
156 3v32_B Ribonuclease ZC3H12A; r 24.8 1.5E+02 0.0052 19.5 5.1 60 2-64 25-93 (185)
157 3ira_A Conserved protein; meth 24.6 52 0.0018 21.1 2.6 26 19-45 29-54 (173)
158 3s3e_A Tyrosine-protein phosph 24.0 68 0.0023 22.4 3.2 27 10-36 216-242 (307)
159 1qav_A Alpha-1 syntrophin (res 23.9 26 0.0009 19.3 0.9 31 4-36 56-86 (90)
160 1fpz_A Cyclin-dependent kinase 23.6 82 0.0028 20.2 3.4 18 20-37 124-141 (212)
161 3mtk_A Diguanylate cyclase/pho 23.5 77 0.0026 19.3 3.2 25 7-31 133-157 (178)
162 2yzt_A Putative uncharacterize 23.2 82 0.0028 16.8 2.9 27 1-28 24-50 (67)
163 3kg0_A Snoab; polyketide, anth 23.1 1.3E+02 0.0045 18.1 7.3 65 4-76 30-99 (128)
164 2e62_A Protein AT5G25060; CWF2 23.0 85 0.0029 17.2 2.8 21 69-89 25-45 (61)
165 3hz8_A Thiol:disulfide interch 23.0 99 0.0034 19.5 3.7 28 2-29 156-189 (193)
166 3n9r_A Fructose-bisphosphate a 22.9 2.1E+02 0.0071 20.3 7.8 60 2-63 99-164 (307)
167 1iuj_A Hypothetical protein TT 22.6 98 0.0034 17.1 3.3 61 6-73 10-75 (106)
168 3i5c_A Fusion of general contr 22.1 73 0.0025 19.7 2.9 27 7-33 167-193 (206)
169 1ydn_A Hydroxymethylglutaryl-C 22.1 1.9E+02 0.0066 19.6 5.7 30 8-37 112-141 (295)
170 3pdw_A Uncharacterized hydrola 22.0 1.6E+02 0.0055 18.9 4.7 31 4-34 11-43 (266)
171 1ic8_A Hepatocyte nuclear fact 21.9 1.2E+02 0.004 20.1 3.9 31 58-90 19-52 (194)
172 3txv_A Probable tagatose 6-pho 21.7 85 0.0029 23.7 3.5 30 4-37 24-53 (450)
173 4i16_A Caspase recruitment dom 21.4 85 0.0029 18.5 2.8 19 72-90 25-43 (93)
174 2d28_C XPSE, type II secretion 21.0 53 0.0018 19.8 2.0 19 72-90 39-57 (149)
175 2rem_A Disulfide oxidoreductas 20.8 91 0.0031 19.2 3.1 16 11-26 172-187 (193)
176 3ghf_A Septum site-determining 20.8 1.5E+02 0.0051 17.8 4.9 37 3-39 19-57 (120)
177 3kkf_A Putative antibiotic bio 20.8 1.3E+02 0.0043 17.0 7.1 66 4-76 12-83 (105)
178 3qm3_A Fructose-bisphosphate a 20.7 2.5E+02 0.0085 20.4 7.3 59 2-62 137-203 (357)
179 1ywf_A Phosphotyrosine protein 20.3 88 0.003 21.7 3.2 20 17-37 162-181 (296)
180 2dsy_A Hypothetical protein TT 20.1 86 0.003 17.7 2.7 27 1-27 36-62 (87)
No 1
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.96 E-value=1.1e-28 Score=182.76 Aligned_cols=90 Identities=63% Similarity=0.995 Sum_probs=85.3
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
+|+++|||+|+++|+.+++.|++++|+++||+|||+.|||++|||++|++..||+++|++.|++.+|||.+|+++|+++|
T Consensus 224 ~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g 303 (365)
T 2ozl_A 224 IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSN 303 (365)
T ss_dssp SCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999987679999999999855799999999999999
Q ss_pred CCCHHHHhhh
Q psy11439 81 LVTPEELKRE 90 (91)
Q Consensus 81 ~~~~~e~~~~ 90 (91)
++|+++++++
T Consensus 304 ~~~~~~~~~i 313 (365)
T 2ozl_A 304 LASVEELKEI 313 (365)
T ss_dssp SSCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9999998764
No 2
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.95 E-value=1.7e-27 Score=176.45 Aligned_cols=89 Identities=31% Similarity=0.480 Sum_probs=79.7
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCC-CCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHc
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHS-MSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNA 79 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs-~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~ 79 (91)
+|+++|||+|+.+|+.+++.|++++|+++||+|||+.|||++||| ++|++..||+++|++.|+ ++|||.+|+++|+++
T Consensus 228 ~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~Ddp~~yr~~~e~~~~~-~~dPi~~~~~~L~~~ 306 (368)
T 1w85_A 228 IPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWA-KKDPLVRFRKFLEAK 306 (368)
T ss_dssp CCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHH-TTCHHHHHHHHHHHT
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCCCCccccCCHHHHHHHh-cCCHHHHHHHHHHHc
Confidence 689999999999999999999999999999999999999999999 999888899999999999 599999999999999
Q ss_pred CCCCHHHHhhh
Q psy11439 80 SLVTPEELKRE 90 (91)
Q Consensus 80 g~~~~~e~~~~ 90 (91)
|++|+++++++
T Consensus 307 g~~~~~~~~~i 317 (368)
T 1w85_A 307 GLWSEEEENNV 317 (368)
T ss_dssp TCCCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 99999988764
No 3
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.94 E-value=4.2e-27 Score=176.43 Aligned_cols=89 Identities=35% Similarity=0.521 Sum_probs=85.1
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
+|+++|||+|+++|+.+++.|++++|+++||+|||+.|||..|||++|++..||+++|++.|+ ++|||.+|+++|+++|
T Consensus 268 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr~~~e~~~~~-~~DPi~~~~~~L~~~g 346 (407)
T 1qs0_A 268 IASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFP-LGDPIARLKQHLIKIG 346 (407)
T ss_dssp CEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHHHCT-TCCHHHHHHHHHHHTT
T ss_pred CeEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCCccccCCHHHHHHHh-cCCHHHHHHHHHHHCC
Confidence 689999999999999999999999999999999999999999999999888899999999998 5999999999999999
Q ss_pred CCCHHHHhhh
Q psy11439 81 LVTPEELKRE 90 (91)
Q Consensus 81 ~~~~~e~~~~ 90 (91)
++|+++++++
T Consensus 347 ~~~~~~~~~i 356 (407)
T 1qs0_A 347 HWSEEEHQAT 356 (407)
T ss_dssp SCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9999988764
No 4
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.93 E-value=1e-25 Score=166.50 Aligned_cols=89 Identities=33% Similarity=0.486 Sum_probs=84.8
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
+|+++|||+|+++|+.+++.|++++++++||+|||+.|||..|||++|++..||+++|++.|+ ++|||.+|+++|+++|
T Consensus 230 ~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~Ghs~~D~~~~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g 308 (367)
T 1umd_A 230 IPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARG 308 (367)
T ss_dssp SCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHHH-TTCHHHHHHHHHHTTT
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCCCCCCCCCccccCCHHHHHHHH-cCCHHHHHHHHHHhCC
Confidence 588999999999999999999999999999999999999999999999888899999999998 5999999999999999
Q ss_pred CCCHHHHhhh
Q psy11439 81 LVTPEELKRE 90 (91)
Q Consensus 81 ~~~~~e~~~~ 90 (91)
++|+++++++
T Consensus 309 ~~~~~~~~~i 318 (367)
T 1umd_A 309 LWNEEWEEDV 318 (367)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9999988764
No 5
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.93 E-value=4.8e-26 Score=170.22 Aligned_cols=89 Identities=30% Similarity=0.449 Sum_probs=64.5
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
+|+++|||+|+.+|+.+++.|++++|+++||+|||+.|||++|||++|++..||+++|++.|++..|||.+|+++|++.|
T Consensus 248 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~dPl~~~~~~L~~~g 327 (400)
T 2bfd_A 248 IMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQG 327 (400)
T ss_dssp CEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-------------------CCHHHHHHHHHTTTT
T ss_pred CcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCCCCCccCCCHHHHHHHHhcCCHHHHHHHHHHHCC
Confidence 58899999999999999999999999999999999999999999999987789999999999854589999999999999
Q ss_pred CCCHHHHhh
Q psy11439 81 LVTPEELKR 89 (91)
Q Consensus 81 ~~~~~e~~~ 89 (91)
+++++++.+
T Consensus 328 ~~~~~~~~~ 336 (400)
T 2bfd_A 328 WWDEEQEKA 336 (400)
T ss_dssp CCCHHHHHH
T ss_pred CCChHHHHH
Confidence 999887764
No 6
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=99.92 E-value=2.8e-25 Score=178.52 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=84.2
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
+|+++|||+|+++|+.|++.|++++|+++||+|||+.|||++|||++|+++ ||.+.+++.|++++||+.+|+++|+++|
T Consensus 345 ~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~~D~p~-~~~p~~~~~~~~~~dPi~~~~~~L~~~G 423 (868)
T 2yic_A 345 APIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPS-MTQPYMYDVIDTKRGSRKAYTEALIGRG 423 (868)
T ss_dssp CCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGG-GTCHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred CcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCcccccc-cCChHHHHHHHhCCCHHHHHHHHHHHcC
Confidence 689999999999999999999999999999999999999999999999987 8888888888867899999999999999
Q ss_pred CCCHHHHhhh
Q psy11439 81 LVTPEELKRE 90 (91)
Q Consensus 81 ~~~~~e~~~~ 90 (91)
++|+++++++
T Consensus 424 ~~t~ee~~~i 433 (868)
T 2yic_A 424 DISMKEAEDA 433 (868)
T ss_dssp SSCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9999988764
No 7
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=99.92 E-value=6.8e-25 Score=179.62 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=84.0
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
+|+++|||+|+++|+.|++.|++++|+++||+|||+.|||++|||++|+++ ||.+.+++.|++.+||+.+|+++|+++|
T Consensus 590 ~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p~-~~~~~~~~~~~~~~dpi~~~~~~L~~~G 668 (1113)
T 2xt6_A 590 APIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPS-MTQPYMYDVIDTKRGSRKAYTEALIGRG 668 (1113)
T ss_dssp CCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGG-GTCHHHHHHHTTCCCHHHHHHHHHHHHT
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCccc-cCChHHHHHHHhcCCHHHHHHHHHHHcC
Confidence 689999999999999999999999999999999999999999999999987 8888888888767899999999999999
Q ss_pred CCCHHHHhhh
Q psy11439 81 LVTPEELKRE 90 (91)
Q Consensus 81 ~~~~~e~~~~ 90 (91)
++|+++++++
T Consensus 669 ~~t~ee~~~i 678 (1113)
T 2xt6_A 669 DISMKEAEDA 678 (1113)
T ss_dssp SSCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9999998764
No 8
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=99.89 E-value=1.6e-23 Score=169.27 Aligned_cols=89 Identities=20% Similarity=0.229 Sum_probs=74.0
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
+|+++|||+|+++|+.+++.|++++|++++|+|||+.|||+.|||++|++. ||+++|++.|++.+||+.+|+++|+++|
T Consensus 417 ~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~~-yr~~~e~~~~~~~~dPi~~~~~~Li~~G 495 (933)
T 2jgd_A 417 APIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPS-ATQPLMYQKIKKHPTPRKIYADKLEQEK 495 (933)
T ss_dssp CCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC------------CCTTHHHHHTSCCHHHHHHHHHHTTT
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccchh-hCCHHHHHHHHccCCHHHHHHHHHHHcC
Confidence 689999999999999999999999999999999999999999999999976 9999999999965799999999999999
Q ss_pred CCCHHHHhhh
Q psy11439 81 LVTPEELKRE 90 (91)
Q Consensus 81 ~~~~~e~~~~ 90 (91)
++|+++++++
T Consensus 496 v~t~~~~~~i 505 (933)
T 2jgd_A 496 VATLEDATEM 505 (933)
T ss_dssp SSCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9999987653
No 9
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.19 E-value=2.4e-11 Score=93.86 Aligned_cols=80 Identities=9% Similarity=0.142 Sum_probs=58.3
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHH--ccCCCEEEEEee---ecCCCCCCCCCCCCCCCHH--HHHHHHhCCChHHHHH
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCR--SDKGPILLETAT---YRYSGHSMSDPGTSYRTRD--EIQEVRQTRDPISSLK 73 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R--~~~gP~lie~~t---yR~~gHs~~D~~~~Yr~~~--e~~~~~~~~DPi~~~~ 73 (91)
+++++|++. .++ ..|++.++ +++||+|||+.| ||+.+|.+.|+...||..+ +..+|. ++||+++|+
T Consensus 511 ~~~~~v~~~--~~l----~~al~~a~~~~~~gP~lIev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~ 583 (603)
T 4feg_A 511 MQAFRVNKI--EQL----PDVFEQAKAIAQHEPVLIDAVITGDRPLPAEKLRLDSAMSSAADIEAFKQRY-EAQDLQPLS 583 (603)
T ss_dssp CEEEEECBG--GGH----HHHHHHHHHHTTTSCEEEEEECCCCCCCCTTSCCCCTTTSCHHHHHHHHHHH-TCTTCCCHH
T ss_pred CeEEEECCH--HHH----HHHHHHHHHhcCCCcEEEEEEeCCCCCCCcccchhhhhhhhHHHHHHHHhhC-CcccCCchH
Confidence 467788753 344 44555555 789999999999 7788999998888888655 566665 589999999
Q ss_pred HHHHHcCCCCHHHH
Q psy11439 74 DKILNASLVTPEEL 87 (91)
Q Consensus 74 ~~L~~~g~~~~~e~ 87 (91)
++|.++|++++++.
T Consensus 584 ~~l~~~g~~~~~~~ 597 (603)
T 4feg_A 584 TYLKQFGLDDLQHQ 597 (603)
T ss_dssp HHHHHTTC------
T ss_pred HHHHHcCCchhhhh
Confidence 99999999998754
No 10
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=98.93 E-value=1.7e-09 Score=85.13 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=54.6
Q ss_pred CceE-EeeCC-CHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCC---CCCCCHHHHHHHHhCCChH
Q psy11439 1 MENK-EVDGM-DILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPG---TSYRTRDEIQEVRQTRDPI 69 (91)
Q Consensus 1 i~~~-~vDG~-D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~---~~Yr~~~e~~~~~~~~DPi 69 (91)
++++ .|||+ |+.++++++++|.+ ..++|+||++.|+|..||+.+|+. ..||+++|++.|++ ++++
T Consensus 212 ~~~~~~vdG~~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~H~~~~~~ee~~~~~~-~~~~ 281 (680)
T 1gpu_A 212 WEVLYVENGNEDLAGIAKAIAQAKL---SKDKPTLIKMTTTIGYGSLHAGSHSVHGAPLKADDVKQLKS-KFGF 281 (680)
T ss_dssp CEEEEESCTTTCHHHHHHHHHHHHH---CTTSCEEEEEECCTTTTSTTTTSGGGSSSCCCHHHHHHHHH-HTTC
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHH---CCCCCEEEEEEeecccccccCCCCccCCCCCCHHHHHHHHH-HcCC
Confidence 3567 89999 99999999998876 468999999999999999987753 35999999999984 5544
No 11
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=98.80 E-value=3.1e-09 Score=83.29 Aligned_cols=63 Identities=19% Similarity=0.177 Sum_probs=52.1
Q ss_pred CceE-EeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCCCC----CCHHHHHHHHhCCChH
Q psy11439 1 MENK-EVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSY----RTRDEIQEVRQTRDPI 69 (91)
Q Consensus 1 i~~~-~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~~Y----r~~~e~~~~~~~~DPi 69 (91)
++++ .|||+|+.++++++++|.+ .++|+||++.|+|..||+..|.. .| ++++|+++|++ ++|+
T Consensus 214 ~~~~~~vdG~d~~~l~~al~~a~~----~~~P~lI~~~t~kg~G~~~~~~~-~~H~~~~~~~e~~~~~~-~~~~ 281 (651)
T 2e6k_A 214 WQTLRVEDVNDLEALRKAIKLAKL----DERPTLIAVRSHIGFGSPKQDSA-KAHGEPLGPEAVEATRR-NLGW 281 (651)
T ss_dssp CEEEEESCTTCHHHHHHHHHHHHH----SSSCEEEEEECCTTTTSTTTTSG-GGTSSCCHHHHHHHHHH-HHTC
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHH----CCCCEEEEEEeEecccccccccc-cccccCCCHHHHHHHHH-HcCC
Confidence 3567 8999999999999988865 68999999999999999965543 35 68899999974 6665
No 12
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=98.78 E-value=2.1e-08 Score=78.76 Aligned_cols=61 Identities=21% Similarity=0.168 Sum_probs=50.9
Q ss_pred CceE-EeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCC-CCCC---CCCCCHHHHHHHHh
Q psy11439 1 MENK-EVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM-SDPG---TSYRTRDEIQEVRQ 64 (91)
Q Consensus 1 i~~~-~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~-~D~~---~~Yr~~~e~~~~~~ 64 (91)
++++ .|||+|+.++++++++|.+ ..++|+||++.|+|..||+. .++. ..||+++|++.|++
T Consensus 210 ~~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~ee~~~~~~ 275 (669)
T 2r8o_A 210 WHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTRE 275 (669)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHH
T ss_pred CeEEeEECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeEeccCcCCcCCCCcccCCCCCHHHHHHHHH
Confidence 3566 8999999999999998875 46899999999999999993 4432 35999999998874
No 13
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=98.53 E-value=3e-07 Score=72.34 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=49.3
Q ss_pred ceE-EeeC-CCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCC---CCCCCHHHHHHHHh
Q psy11439 2 ENK-EVDG-MDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPG---TSYRTRDEIQEVRQ 64 (91)
Q Consensus 2 ~~~-~vDG-~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~---~~Yr~~~e~~~~~~ 64 (91)
+++ .||| +|+.++++|+++|.+ ..++|+||++.|+|-.||+..|.. ..+++++|++.|++
T Consensus 213 ~~~~~vdG~~d~~~l~~Al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~H~~~~~~ee~~~~~~ 277 (673)
T 1r9j_A 213 HVIEVKNGDTDYEGLRKALAEAKA---TKGKPKMIVQTTTIGFGSSKQGTEKVHGAPLGEEDIANIKA 277 (673)
T ss_dssp EEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTSTTTTSGGGTSSCCCHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHH---cCCCCEEEEEecccccccccCCCcccccCCCCHHHHHHHHH
Confidence 566 8999 999999999988864 368999999999999999855542 24788899888874
No 14
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=98.29 E-value=2.2e-06 Score=67.92 Aligned_cols=60 Identities=18% Similarity=0.137 Sum_probs=45.1
Q ss_pred CceEEe-eCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCC----CCCCHHHHHHHH
Q psy11439 1 MENKEV-DGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGT----SYRTRDEIQEVR 63 (91)
Q Consensus 1 i~~~~v-DG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~----~Yr~~~e~~~~~ 63 (91)
++++.| ||+|+.++++|+++|.+ .+++|+||+|+|+|-.||+...... .--+++|++.++
T Consensus 232 ~~~~~V~DG~D~~al~~Al~~A~~---~~~~P~lI~~~T~kG~G~~~~e~~~~~Hg~~~~~e~~~~~~ 296 (700)
T 3rim_A 232 WHVQEVEGGENVVGIEEAIANAQA---VTDRPSFIALRTVIGYPAPNLMDTGKAHGAALGDDEVAAVK 296 (700)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSHHHHHSCCCHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHH---cCCCCEEEEEEEEeeecCCccCCCccccCCCCCHHHHHHHH
Confidence 367889 99999999999988854 4789999999999999998543211 123566665543
No 15
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=98.18 E-value=4.2e-06 Score=65.85 Aligned_cols=59 Identities=19% Similarity=0.130 Sum_probs=45.8
Q ss_pred ceE-EeeCC-CHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCC----CCCCHHHHHHHH
Q psy11439 2 ENK-EVDGM-DILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGT----SYRTRDEIQEVR 63 (91)
Q Consensus 2 ~~~-~vDG~-D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~----~Yr~~~e~~~~~ 63 (91)
+++ .|||+ |+.+++.++++|.+ ..++|+||++.|++-.||+...++. .+.+++|++.++
T Consensus 224 ~~~~~vdG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~e~~~~~~ 288 (675)
T 1itz_A 224 HTIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATR 288 (675)
T ss_dssp EEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHH---CCCCeEEEEEeeecccCcccccCcccccCCCCCHHHHHHHH
Confidence 466 89999 99999999888764 3689999999999999998533221 256777777665
No 16
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=98.04 E-value=8.9e-06 Score=64.59 Aligned_cols=43 Identities=23% Similarity=0.217 Sum_probs=28.9
Q ss_pred CceEE-eeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCC
Q psy11439 1 MENKE-VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS 47 (91)
Q Consensus 1 i~~~~-vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~ 47 (91)
+++++ |||+|+.++.+++++| ++.++|+||++.|+|-.||+..
T Consensus 251 ~~~~~~vdG~d~~~l~~Al~~A----~~~~~P~lI~v~T~kG~G~~~~ 294 (711)
T 3uk1_A 251 WNVIPNVNGHDVDAIDAAIAKA----KRSDKPSLICCKTRIGNGAATK 294 (711)
T ss_dssp CEEEEEEETTCHHHHHHHHHHH----TTCSSCEEEEEEC---------
T ss_pred CcEEEEeCCCCHHHHHHHHHHH----HhCCCCEEEEEccccccCCCCC
Confidence 35677 8999999998887765 4578999999999999999753
No 17
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=98.00 E-value=6.7e-06 Score=64.14 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=37.6
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGT 51 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~ 51 (91)
+++++|||+|+.++..+++.+ .++|+||++.|+|..||+..+++.
T Consensus 209 ~~~~~VdG~d~~~l~~al~~~------~~~P~lI~v~T~kg~G~~~~e~~~ 253 (616)
T 3mos_A 209 WHAIIVDGHSVEELCKAFGQA------KHQPTAIIAKTFKGRGITGVEDKE 253 (616)
T ss_dssp CEEEEEETTCHHHHHHHHHSC------CSSCEEEEEECCTTTTSTTTTTCS
T ss_pred CeEEEEcCCCHHHHHHHHHhc------CCCCEEEEEEEecccccccccCch
Confidence 367899999999999998543 589999999999999998765443
No 18
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=97.97 E-value=3.6e-06 Score=68.22 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=42.7
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCC--CCCCC----CCCCHHHHHHHHh
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM--SDPGT----SYRTRDEIQEVRQ 64 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~--~D~~~----~Yr~~~e~~~~~~ 64 (91)
+.+||+|+.++++|++.|.++ .++|++|+++|++-.||+. .++.. .|++.++++.|++
T Consensus 359 l~~dGhD~~~l~~a~~~A~~~---~~~PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~ 422 (886)
T 2qtc_A 359 LNRGGHDPKKIYAAFKKAQET---KGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRD 422 (886)
T ss_dssp CCBGGGCHHHHHHHHHHHHHC---CSSCEEEEEECCTTTTCTTCC-------------CHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHc---CCCCEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHHHH
Confidence 357999999999999999874 3689999999999999972 33222 2888999998874
No 19
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=97.87 E-value=2.5e-05 Score=61.51 Aligned_cols=43 Identities=28% Similarity=0.277 Sum_probs=36.1
Q ss_pred CceE-EeeCCCHHHHHHHHHHHHHHHHc-cCCCEEEEEeeecCCCCCCC
Q psy11439 1 MENK-EVDGMDILAVREAARFAVNHCRS-DKGPILLETATYRYSGHSMS 47 (91)
Q Consensus 1 i~~~-~vDG~D~~~v~~a~~~a~~~~R~-~~gP~lie~~tyR~~gHs~~ 47 (91)
++++ .|||+|+.++++|++.| ++ .++|+||++.|++-.||+..
T Consensus 212 ~~~~~~vdG~d~~~l~~al~~A----~~~~~~P~lI~~~T~kg~G~~~~ 256 (663)
T 3kom_A 212 WHVIENVDGHDFVAIEKAINEA----HSQQQKPTLICCKTVIGFGSPEK 256 (663)
T ss_dssp CEEEEEEETTCHHHHHHHHHHH----HHCSSSCEEEEEECCTTTTCTTT
T ss_pred CeEEEEEcCCCHHHHHHHHHHH----HhcCCCCEEEEEecccccccCCC
Confidence 3567 89999999998877665 44 68999999999999999854
No 20
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=97.85 E-value=3.3e-05 Score=60.62 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=36.3
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS 47 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~ 47 (91)
++++.|||+|+.++.+++++| ++.++|+||++.|++-.||+..
T Consensus 207 ~~~~~vdGhd~~~l~~al~~A----~~~~~P~lI~v~T~kG~G~~~~ 249 (632)
T 3l84_A 207 FEVLSINGHDYEEINKALEQA----KKSTKPCLIIAKTTIAKGAGEL 249 (632)
T ss_dssp CEEEEEETTCHHHHHHHHHHH----HTCSSCEEEEEECCTTTTCGGG
T ss_pred CeEEEEeeCCHHHHHHHHHHH----HhCCCCEEEEEeeEeeecCCCC
Confidence 356789999999998877765 4578999999999999999753
No 21
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=97.56 E-value=0.00012 Score=57.88 Aligned_cols=41 Identities=34% Similarity=0.362 Sum_probs=34.7
Q ss_pred ceEEe-eCCCHHHHHHHHHHHHHHHHc-cCCCEEEEEeeecCCCCCC
Q psy11439 2 ENKEV-DGMDILAVREAARFAVNHCRS-DKGPILLETATYRYSGHSM 46 (91)
Q Consensus 2 ~~~~v-DG~D~~~v~~a~~~a~~~~R~-~~gP~lie~~tyR~~gHs~ 46 (91)
+++.| ||+|+.++.+|++.| ++ .++|+||++.|++-.|++.
T Consensus 237 ~~~~v~DG~d~~~l~~Al~~a----~~~~~~P~lI~v~T~kG~G~~~ 279 (690)
T 3m49_A 237 QVIRVEDGNDIEAIAKAIEEA----KADEKRPTLIEVRTTIGFGSPN 279 (690)
T ss_dssp EEEEESCTTCHHHHHHHHHHH----HHCCSSCEEEEEECCTTTTCTT
T ss_pred cEEEEecCCCHHHHHHHHHHH----HhcCCCCEEEEEEeecccccCc
Confidence 56788 999999998876554 55 7899999999999999974
No 22
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=97.55 E-value=9.3e-05 Score=57.53 Aligned_cols=40 Identities=28% Similarity=0.297 Sum_probs=34.9
Q ss_pred eE-EeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCC
Q psy11439 3 NK-EVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 46 (91)
Q Consensus 3 ~~-~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~ 46 (91)
++ .|||+|+.++.+++++|. +.+||+||++.|+|-.||+.
T Consensus 250 ~~g~vdG~d~~~l~~al~~A~----~~~gP~lI~v~t~kg~G~~~ 290 (621)
T 2o1s_A 250 YIGPVDGHDVLGLITTLKNMR----DLKGPQFLHIMTKKGRGYEP 290 (621)
T ss_dssp EEEEEETTCHHHHHHHHHHHH----HSCSEEEEEEECCCTTCCCC
T ss_pred EeeeeCCCCHHHHHHHHHHHH----HcCCCEEEEEEEecccCCCh
Confidence 35 899999999999888875 35899999999999999984
No 23
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=97.31 E-value=0.00023 Score=55.39 Aligned_cols=40 Identities=23% Similarity=0.207 Sum_probs=34.4
Q ss_pred ceE-EeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCC
Q psy11439 2 ENK-EVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHS 45 (91)
Q Consensus 2 ~~~-~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs 45 (91)
+++ +|||+|+.++.+++++| ++.+||+||++.|++-.||+
T Consensus 254 ~~~g~vdG~d~~~l~~al~~A----~~~~~P~lI~v~t~kg~G~~ 294 (629)
T 2o1x_A 254 RYVGPVDGHNVQELVWLLERL----VDLDGPTILHIVTTKGKGLS 294 (629)
T ss_dssp EEEEEEESSCHHHHHHHHHHH----TTSSSEEEEEEECCTTTTCH
T ss_pred eEEeeECCcCHHHHHHHHHHH----HhcCCCEEEEEEEecCCCCC
Confidence 456 89999999998888776 45689999999999999886
No 24
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=95.10 E-value=0.019 Score=44.14 Aligned_cols=40 Identities=15% Similarity=0.035 Sum_probs=33.6
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYS 42 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~ 42 (91)
+++++|+ ++.++.+++++|++++|+.+||+|||+.|+|..
T Consensus 543 ~~~~~v~--~~~el~~al~~a~~~~~~~~gp~lIev~~~~~~ 582 (616)
T 2pan_A 543 CKAIRVF--KPEDIAPAFEQAKALMAQYRVPVVVEVILERVT 582 (616)
T ss_dssp CEEEEEC--SGGGHHHHHHHHHHHHHHHCSCEEEEEEBCSCC
T ss_pred CeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecccc
Confidence 3566776 578889999999998888899999999999865
No 25
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=94.34 E-value=0.066 Score=41.05 Aligned_cols=39 Identities=10% Similarity=0.074 Sum_probs=31.7
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYS 42 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~ 42 (91)
+++++|+ ++.++..++++|++.+|. +||+|||+.|+|-.
T Consensus 503 ~~~~~v~--~~~el~~al~~a~~~~~~-~gp~liev~~~~~~ 541 (590)
T 1v5e_A 503 AKGFTVS--RIEDMDRVMAEAVAANKA-GHTVVIDCKITQDR 541 (590)
T ss_dssp SEEEEEC--BHHHHHHHHHHHHHHHHT-TCCEEEEEECCSCC
T ss_pred CEEEEEC--CHHHHHHHHHHHHHhcCC-CCCEEEEEEecccc
Confidence 3567776 578899999999888775 89999999998753
No 26
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=92.20 E-value=0.11 Score=39.03 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=23.6
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
++++|++. .+ +..|++.+++.+||+|||+.|.+
T Consensus 493 ~~~~v~~~--~~----l~~al~~a~~~~gp~liev~~~~ 525 (528)
T 1q6z_A 493 QALKADNL--EQ----LKGSLQEALSAKGPVLIEVSTVS 525 (528)
T ss_dssp EEEEESSH--HH----HHHHHHHHHTCSSCEEEEEEBCC
T ss_pred eEEEeCCH--HH----HHHHHHHHHHCCCcEEEEEEecC
Confidence 45667653 34 45566666778999999999975
No 27
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=89.68 E-value=0.34 Score=36.88 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=23.3
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
++++|+ ++.++..+++ .+++.+||+|||+.|+|
T Consensus 529 ~~~~v~--~~~~l~~al~----~a~~~~gp~liev~~~~ 561 (573)
T 2iht_A 529 DATRAT--NREELLAALR----KGAELGRPFLIEVPVNY 561 (573)
T ss_dssp EEEECC--SHHHHHHHHH----HHHTSSSCEEEEEEBCC
T ss_pred eEEEeC--CHHHHHHHHH----HHHhCCCCEEEEEECCC
Confidence 456665 4555555544 45567899999999998
No 28
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=89.01 E-value=0.25 Score=37.47 Aligned_cols=33 Identities=6% Similarity=-0.007 Sum_probs=22.8
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
++++|++ +.+ +..|++.+++.+||+|||+.|.+
T Consensus 507 ~~~~v~~--~~~----l~~al~~a~~~~gp~liev~~~~ 539 (556)
T 3hww_A 507 KYHRPQN--WQE----LETAFADAWRTPTTTVIEMVVND 539 (556)
T ss_dssp EEECCSS--HHH----HHHHHHHHTTSSSEEEEEEECCS
T ss_pred cEEecCC--HHH----HHHHHHHHHhCCCCEEEEEECCc
Confidence 4555543 333 45666677788999999998854
No 29
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=88.31 E-value=0.57 Score=35.43 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=22.8
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCC
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYS 42 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~ 42 (91)
++++|+ ++.++. .+++.+++.+||+|||+.|.+..
T Consensus 497 ~~~~v~--~~~~l~----~al~~a~~~~gp~liev~~~~~~ 531 (549)
T 3eya_A 497 TGIRVE--KASEVD----EALQRAFSIDGPVLVDVVVAKEE 531 (549)
T ss_dssp EEEEEC--SGGGHH----HHHHHHHHSSSCEEEEEEBCCCC
T ss_pred cEEEeC--CHHHHH----HHHHHHHhCCCCEEEEEEecccc
Confidence 445554 344444 44555556799999999998744
No 30
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=87.95 E-value=0.44 Score=36.23 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=23.5
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecC
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRY 41 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~ 41 (91)
++++|++ +.++..++++| .+.+||+|||+.|+|-
T Consensus 511 ~~~~v~~--~~el~~al~~a----~~~~gp~liev~~~~~ 544 (566)
T 1ozh_A 511 KGFAVES--AEALEPTLRAA----MDVDGPAVVAIPVDYR 544 (566)
T ss_dssp EEEECCS--GGGHHHHHHHH----HHSSSCEEEEEEBCCT
T ss_pred eEEEeCC--HHHHHHHHHHH----HhCCCCEEEEEEeCCC
Confidence 4566663 55555555555 4578999999999873
No 31
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=87.94 E-value=0.65 Score=35.21 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=25.5
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCC
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYS 42 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~ 42 (91)
++++|+ ++.++..++++|+ +.+||+|||+.|+|..
T Consensus 515 ~~~~v~--~~~el~~al~~a~----~~~~p~liev~~~~~~ 549 (568)
T 2c31_A 515 KGYVAN--TPAELKAALEEAV----ASGKPCLINAMIDPDA 549 (568)
T ss_dssp EEEEES--SHHHHHHHHHHHH----HHTSCEEEEEEBCTTS
T ss_pred eEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecccc
Confidence 456775 5677766666665 4689999999998743
No 32
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=87.90 E-value=0.73 Score=35.15 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=25.1
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCC
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSG 43 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~g 43 (91)
++++|+ ++.++..++++| .+.+||+|||+.|+|...
T Consensus 526 ~~~~v~--~~~el~~al~~a----~~~~gp~liev~~~~~~~ 561 (590)
T 1ybh_A 526 PAARVT--KKADLREAIQTM----LDTPGPYLLDVICPHQEH 561 (590)
T ss_dssp CEEEEC--BHHHHHHHHHHH----HHSSSCEEEEEECCTTCC
T ss_pred eEEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEecCCcc
Confidence 456665 466665555554 456899999999998653
No 33
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=87.50 E-value=0.88 Score=34.44 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=23.6
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
++++|+ ++.++.+++++|+ +.+||+|||+.|++
T Consensus 514 ~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~ 546 (563)
T 2uz1_A 514 DGYHVD--SVESFSAALAQAL----AHNRPACINVAVAL 546 (563)
T ss_dssp EEEEEC--SHHHHHHHHHHHH----HSSSCEEEEEECCS
T ss_pred eEEEeC--CHHHHHHHHHHHH----HCCCCEEEEEEecc
Confidence 456665 4666666666554 46899999999974
No 34
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=86.83 E-value=1.1 Score=25.61 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=30.5
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCC
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGH 44 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gH 44 (91)
++.-|.|.++.-++.++.+..+|++.|-+ ||-+.|.
T Consensus 5 irfrgddleafekalkemirqarkfagtv-----tytldgn 40 (85)
T 2kl8_A 5 IRFRGDDLEAFEKALKEMIRQARKFAGTV-----TYTLDGN 40 (85)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTTTCEE-----EEEECSS
T ss_pred eeecCCcHHHHHHHHHHHHHHHHhhcceE-----EEEecCC
Confidence 67889999999999999999999999854 5666654
No 35
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=86.40 E-value=0.97 Score=35.40 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=25.0
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCC
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYS 42 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~ 42 (91)
++++|+ ++.++..++++|+ +.+||+|||+.|+|-.
T Consensus 605 ~~~~v~--~~~el~~al~~a~----~~~gp~lIev~~~~~~ 639 (677)
T 1t9b_A 605 KGLRVK--KQEELDAKLKEFV----STKGPVLLEVEVDKKV 639 (677)
T ss_dssp EEEEEC--SHHHHHHHHHHHH----HCSSCEEEEEEBCSSC
T ss_pred eEEEEC--CHHHHHHHHHHHH----HCCCcEEEEEEecCCc
Confidence 466674 4666666665554 5689999999999854
No 36
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=86.28 E-value=0.82 Score=34.42 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=23.2
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
++++|+ ++.++.. |++.+++.+||+|||+.|++
T Consensus 500 ~~~~v~--~~~~l~~----al~~a~~~~gp~liev~~~~ 532 (552)
T 1ovm_A 500 ECWRVS--EAEQLAD----VLEKVAHHERLSLIEVMLPK 532 (552)
T ss_dssp EEEEEC--BHHHHHH----HHHHHTTCSSEEEEEEECCT
T ss_pred CEEEeC--CHHHHHH----HHHHHHhCCCCEEEEEEcCc
Confidence 456676 4555554 44455678899999999875
No 37
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=86.18 E-value=0.73 Score=34.90 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=23.9
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHcc-CCCEEEEEeeec
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSD-KGPILLETATYR 40 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~-~gP~lie~~tyR 40 (91)
++++|+ ++.++.+++++|+ +. +||+|||+.|+|
T Consensus 500 ~~~~v~--~~~el~~al~~a~----~~~~gp~liev~~~~ 533 (566)
T 2vbi_A 500 LGLKAT--TPKELTEAIARAK----ANTRGPTLIECQIDR 533 (566)
T ss_dssp EEEEEC--SHHHHHHHHHHHH----HCCSSCEEEEEECCT
T ss_pred cEEEeC--CHHHHHHHHHHHH----hcCCCcEEEEEEeCc
Confidence 566776 5666666666554 44 899999999976
No 38
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=86.11 E-value=1.1 Score=33.95 Aligned_cols=33 Identities=12% Similarity=-0.076 Sum_probs=23.4
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
+++|+ ++.++.++++++ +++.+||+|||+.|+|
T Consensus 519 ~~~v~--~~~el~~al~~a---~~~~~~p~liev~~~~ 551 (570)
T 2vbf_A 519 SKIVR--TENEFVSVMKEA---QADVNRMYWIELVLEK 551 (570)
T ss_dssp EEEEC--BHHHHHHHHHHH---HHCTTSEEEEEEECCT
T ss_pred eEEec--CHHHHHHHHHHH---HhcCCCcEEEEEEcCc
Confidence 56665 466665555543 4677899999999976
No 39
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=85.54 E-value=1.1 Score=33.94 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=25.6
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCC
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYS 42 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~ 42 (91)
++++|+ ++.++..++++|+ +.+||+|||+.|.|..
T Consensus 512 ~~~~v~--~~~el~~al~~a~----~~~~p~liev~~~~~~ 546 (564)
T 2q28_A 512 VGYNVT--TTDELRHALTTGI----QSRKPTIINVVIDPAA 546 (564)
T ss_dssp EEEEEC--SHHHHHHHHHHHH----HHTSCEEEEEEBCTTS
T ss_pred eEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecccc
Confidence 456675 4677766666665 4689999999998754
No 40
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=84.58 E-value=0.7 Score=35.26 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=23.5
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCC
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYS 42 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~ 42 (91)
++++|++ +.++..++++| .+.+||+|||+.|+|-.
T Consensus 515 ~~~~v~~--~~el~~al~~a----~~~~gp~liev~~~~~~ 549 (589)
T 2pgn_A 515 YGESVRE--TGDIAGALQRA----IDSGKPALIEIPVSKTQ 549 (589)
T ss_dssp EEEECTT--TCCHHHHHHHH----HHHCSCEEEEEECCSSS
T ss_pred eEEEECC--HHHHHHHHHHH----HhCCCCEEEEEEecCCC
Confidence 4566664 34455555554 44689999999998754
No 41
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=83.50 E-value=2.1 Score=34.89 Aligned_cols=38 Identities=16% Similarity=0.056 Sum_probs=29.7
Q ss_pred EeeC-C--CHHHHHHHHHHHHHH-----------HHc--cCCC--EEEEEeeecCC
Q psy11439 5 EVDG-M--DILAVREAARFAVNH-----------CRS--DKGP--ILLETATYRYS 42 (91)
Q Consensus 5 ~vDG-~--D~~~v~~a~~~a~~~-----------~R~--~~gP--~lie~~tyR~~ 42 (91)
.||| + |+.++..++.+|++. +|+ .++| .+|-++|.-=.
T Consensus 267 ~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~kG~ 322 (845)
T 3ahc_A 267 FVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRTPKGW 322 (845)
T ss_dssp EECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEECCTTT
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEECcccC
Confidence 7899 8 999999998776643 454 3689 99999996544
No 42
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=83.35 E-value=1.4 Score=33.40 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=23.5
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCE-EEEEeeec
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPI-LLETATYR 40 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~-lie~~tyR 40 (91)
++++|+ ++.++.+++++|+ +.+||+ |||+.|+|
T Consensus 509 ~~~~v~--~~~el~~al~~a~----~~~gp~~liev~~~~ 542 (565)
T 2nxw_A 509 DGVRVR--TRAELKAALDKAF----ATRGRFQLIEAMIPR 542 (565)
T ss_dssp EEEEEC--BHHHHHHHHHHHH----HCCSSCEEEEEECCT
T ss_pred CEEEeC--CHHHHHHHHHHHH----hcCCCeEEEEEEccc
Confidence 567776 4566666666554 457898 99999975
No 43
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=83.23 E-value=1.3 Score=33.52 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=24.3
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
++++|+ ++.++..++++|++. .+||+|||+.|+|
T Consensus 508 ~~~~v~--~~~el~~al~~a~~~---~~gp~liev~~~~ 541 (568)
T 2wvg_A 508 KGLKAK--TGGELAEAIKVALAN---TDGPTLIECFIGR 541 (568)
T ss_dssp EEEEES--BHHHHHHHHHHHHHC---CSSCEEEEEECCT
T ss_pred ceEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEcCc
Confidence 466775 566776666666542 2899999999986
No 44
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=80.58 E-value=0.82 Score=34.58 Aligned_cols=33 Identities=9% Similarity=-0.016 Sum_probs=22.4
Q ss_pred eEEeeCCCHHHHHHHHH-HHHHHHHccCCCEEEEEeeec
Q psy11439 3 NKEVDGMDILAVREAAR-FAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~-~a~~~~R~~~gP~lie~~tyR 40 (91)
+++|++ +.++..+++ +|++ .++||+|||+.|++
T Consensus 509 ~~~v~~--~~el~~al~~~a~~---~~~~p~liev~~~~ 542 (563)
T 2vk8_A 509 THRVAT--TGEWDKLTQDKSFN---DNSKIRMIEVMLPV 542 (563)
T ss_dssp EEEECB--HHHHHHHHTCTTTT---SCSSEEEEEEECCT
T ss_pred EEEecC--HHHHHHHHHHHHHh---CCCCcEEEEEEeCc
Confidence 677774 666666655 4432 34579999999875
No 45
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=80.44 E-value=1.2 Score=33.89 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=20.3
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
++++|+ ++.++ ..|++.+.+.+||+|||+.|.|
T Consensus 528 ~~~~v~--~~~el----~~al~~a~~~~gp~liev~~~~ 560 (578)
T 3lq1_A 528 DYHEAK--SVDEL----EEAIDKASYHKGLDIIEVKTNR 560 (578)
T ss_dssp EEEECC--SHHHH----HHHHHHHTTSSSEEEEEEC---
T ss_pred ceEecC--CHHHH----HHHHHHHHhCCCCEEEEEECCc
Confidence 455554 44444 4555566678999999998866
No 46
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=79.23 E-value=3.7 Score=26.19 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=27.3
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHccCCCE
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSDKGPI 32 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~ 32 (91)
.++..|.|.++.-+|.++.+..+|++.|-+
T Consensus 5 ~i~f~gddlea~ekalkemirqarkfagtv 34 (170)
T 4hhu_A 5 VIVFEGDDLEALEKALKEMIRQARKFAGTV 34 (170)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred EEEEecCcHHHHHHHHHHHHHHHHhhcceE
Confidence 467889999999999999999999999854
No 47
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=79.10 E-value=3.7 Score=26.19 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=31.0
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCC
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGH 44 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gH 44 (91)
.++..|.|.++.-+|.++.+..+|++.|-+ ||-+.|.
T Consensus 86 ~i~f~gddlea~ekalkemirqarkfagtv-----tytl~gn 122 (170)
T 4hhu_A 86 VIVFEGDDLEALEKALKEMIRQARKFAGTV-----TYTLSGN 122 (170)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHHHTTCEE-----EEEECSS
T ss_pred EEEEecCcHHHHHHHHHHHHHHHHhhcceE-----EEEEeCC
Confidence 467889999999999999999999999854 5655554
No 48
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=73.46 E-value=0.88 Score=34.83 Aligned_cols=33 Identities=18% Similarity=0.044 Sum_probs=21.6
Q ss_pred ceEEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 2 ENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 2 ~~~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
++++|+ ++.++.. |++.+.+.+||+|||+.|+|
T Consensus 548 ~~~~v~--~~~el~~----al~~a~~~~gp~liev~~~~ 580 (604)
T 2x7j_A 548 TYSCPA--SWDEFKT----AYAPQADKPGLHLIEIKTDR 580 (604)
T ss_dssp EEECCS--SHHHHHH----HCCCCCSSCCEEEEEEECCH
T ss_pred eEEecC--CHHHHHH----HHHHHHhCCCCEEEEEECCc
Confidence 445555 4555544 44445567899999998864
No 49
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=64.76 E-value=5.4 Score=27.12 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=17.9
Q ss_pred HHHHHHHHHcCCCCHHHHhhh
Q psy11439 70 SSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 70 ~~~~~~L~~~g~~~~~e~~~~ 90 (91)
.-+.+.|++.|++|.+||++-
T Consensus 74 ~ale~lLvekG~it~~EL~a~ 94 (206)
T 4fm4_B 74 TTAVTLCIEKGVFTAAELEAK 94 (206)
T ss_dssp HHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHhhc
Confidence 357888999999999999864
No 50
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=63.01 E-value=5.2 Score=21.64 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=19.0
Q ss_pred CChHHHHHHHHHHcCCCCHHHHhhhC
Q psy11439 66 RDPISSLKDKILNASLVTPEELKREL 91 (91)
Q Consensus 66 ~DPi~~~~~~L~~~g~~~~~e~~~~~ 91 (91)
.-|+..=...|...| +|++|+++.+
T Consensus 27 ~sp~~~K~~FL~sKG-Lt~~EI~~Al 51 (54)
T 3ff5_A 27 QSPLATRRAFLKKKG-LTDEEIDLAF 51 (54)
T ss_dssp GSCHHHHHHHHHHTT-CCHHHHHHHH
T ss_pred cCCHHHHHHHHHHcC-CCHHHHHHHH
Confidence 456777777888877 7999998753
No 51
>2zzd_B Thiocyanate hydrolase subunit beta; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_B 2dxb_B 2dd5_B* 2dxc_B*
Probab=62.40 E-value=6.6 Score=25.67 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCCCCHHHHhh
Q psy11439 69 ISSLKDKILNASLVTPEELKR 89 (91)
Q Consensus 69 i~~~~~~L~~~g~~~~~e~~~ 89 (91)
|.-+.+.|+++|++|++||++
T Consensus 113 L~ALe~lLvekGvit~~EL~a 133 (157)
T 2zzd_B 113 LLTAARILVDKQFVTLTELHN 133 (157)
T ss_dssp HHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHH
Confidence 345888999999999999975
No 52
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A
Probab=61.04 E-value=5 Score=24.40 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 12 LAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 12 ~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
...+..+-+.++.+++.++|++|+|.
T Consensus 64 ~~~~~~~~~~i~~~~~~~~~VlVHC~ 89 (144)
T 3ezz_A 64 SSWFMEAIEYIDAVKDCRGRVLVHSQ 89 (144)
T ss_dssp TTTHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEECC
Confidence 34445555566667777899999994
No 53
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=60.96 E-value=5.1 Score=24.48 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
|+...+..+-..++.++..+||+||+|.
T Consensus 62 ~~~~~~~~~~~fi~~~~~~~~~VlVHC~ 89 (144)
T 3s4e_A 62 NILSYFPECFEFIEEAKRKDGVVLVHSN 89 (144)
T ss_dssp CGGGGHHHHHHHHHHHHHTTCCEEEECS
T ss_pred chHHHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 3444455555666666777899999994
No 54
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=59.43 E-value=7.4 Score=24.47 Aligned_cols=28 Identities=11% Similarity=0.027 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
|+...+..+-..++.++..+|++||+|.
T Consensus 68 ~l~~~~~~~~~fI~~~~~~~~~VlVHC~ 95 (161)
T 3emu_A 68 QLYDSIPNAIKFIIRSIQRKEGVLIISG 95 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cHHHHHHHHHHHHHHHHhcCCeEEEEcC
Confidence 3444455555555666667899999994
No 55
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}
Probab=58.92 E-value=8.7 Score=23.92 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
++...+..+-..++.+++.++|+||+|.
T Consensus 70 ~~~~~~~~~~~~i~~~~~~~~~VlVHC~ 97 (164)
T 2hcm_A 70 DLLTHLEPTCAAMEAAVRDGGSCLVYCK 97 (164)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred hHHHHHHHHHHHHHHHHHcCCEEEEECC
Confidence 3333344444555666667899999994
No 56
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=58.02 E-value=8 Score=29.23 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 8 GMDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 8 G~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
=.++..+...+.+|+..+..++ ||+.|++=
T Consensus 139 v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (573)
T 2iht_A 139 LQRPHEITDLVDSAVNAAMTEPVGPSFISLP 169 (573)
T ss_dssp CCSGGGHHHHHHHHHHHHTBSSCCCEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 3577788899999999999987 99999883
No 57
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=57.72 E-value=7.3 Score=29.40 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
.++..+...+..|+..+..++||+.|++-
T Consensus 139 ~~~~~~~~~l~~A~~~A~~~~GPV~l~iP 167 (568)
T 2wvg_A 139 YTPEEAPAKIDHVIKTALREKKPVYLEIA 167 (568)
T ss_dssp CSGGGHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 45666777888899999999999999884
No 58
>2fb0_A Conserved hypothetical protein; SAD, bacteroides thetaiotaom structural genomics, PSI, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron}
Probab=57.22 E-value=23 Score=19.62 Aligned_cols=67 Identities=12% Similarity=0.132 Sum_probs=46.7
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCC-----CCCCHHHHHHHHhCCChHHHHHHHHH
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGT-----SYRTRDEIQEVRQTRDPISSLKDKIL 77 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~-----~Yr~~~e~~~~~~~~DPi~~~~~~L~ 77 (91)
++|.-....++.++++..+...|+..| .|....+|-. .|+.. .|+|.+.++.|. +.+-...|.+.+.
T Consensus 11 ~~vkpg~~~~~~~~~~~~~~~~~~epG--~l~~~~~~~~----~~p~~~~~~e~w~~~~a~~~h~-~s~~~~~~~~~~~ 82 (94)
T 2fb0_A 11 VRVNETNREKAIEAAKELTACSLKEEG--CIAYDTFESS----TRRDVFMICETWQNAEVLAAHE-KTAHFAQYVGIIQ 82 (94)
T ss_dssp EECCTTTHHHHHHHHHHHHHHHTTSTT--EEEEEEEECS----SCTTEEEEEEEESSHHHHHHHT-TSHHHHHHHHHHH
T ss_pred EEECcccHHHHHHHHHHHHHHHhcCCC--ceEEEEEEcC----CCCCEEEEEEEECCHHHHHHHh-CCHHHHHHHHHHH
Confidence 455556788899999999998886555 7777777743 23322 489999999987 4566666666553
No 59
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=57.22 E-value=7.2 Score=22.21 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=18.8
Q ss_pred CChHHHHHHHHHHcCCCCHHHHhhh
Q psy11439 66 RDPISSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 66 ~DPi~~~~~~L~~~g~~~~~e~~~~ 90 (91)
.-|+..=.+.|...| +|++||++.
T Consensus 32 ~sp~~~K~~FL~sKG-Lt~eEI~~A 55 (70)
T 2w84_A 32 QSPLATRRAFLKKKG-LTDEEIDMA 55 (70)
T ss_dssp GSCHHHHHHHHHHTT-CCHHHHHHH
T ss_pred hCCHHHHHHHHHHcC-CCHHHHHHH
Confidence 457777778888877 799999875
No 60
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=56.54 E-value=9 Score=26.25 Aligned_cols=21 Identities=10% Similarity=0.286 Sum_probs=18.2
Q ss_pred HHHHHHHHHcCCCCHHHHhhh
Q psy11439 70 SSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 70 ~~~~~~L~~~g~~~~~e~~~~ 90 (91)
.-+.+.|+++|++|.+||++-
T Consensus 74 ~ale~lLvekG~it~~EL~~r 94 (219)
T 3qyh_B 74 HVFENLLVEKGVLTATEVATG 94 (219)
T ss_dssp HHHHHHHHHTTSSCHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHh
Confidence 458899999999999999863
No 61
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=56.20 E-value=9.3 Score=26.08 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCCCHHHHhh
Q psy11439 70 SSLKDKILNASLVTPEELKR 89 (91)
Q Consensus 70 ~~~~~~L~~~g~~~~~e~~~ 89 (91)
.-+.+.|+++|++|.+||++
T Consensus 78 ~ale~lLvekGvit~~EL~~ 97 (212)
T 3a8g_B 78 IGVATLMVEKGILTQDELES 97 (212)
T ss_dssp HHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHh
Confidence 45889999999999999986
No 62
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}
Probab=55.57 E-value=10 Score=23.12 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
++...+..+-..++.++..++|++|+|.
T Consensus 64 ~~~~~~~~~~~~i~~~~~~~~~VlVHC~ 91 (149)
T 1zzw_A 64 NLRQYFEEAFEFIEEAHQCGKGLLIHCQ 91 (149)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred cHHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 3333344444555666667899999993
No 63
>2gff_A LSRG protein; dimeric alpha+beta barrel ferredoxin fold, sugar binding protein; 1.75A {Yersinia pestis} PDB: 3qmq_A
Probab=55.46 E-value=27 Score=19.95 Aligned_cols=66 Identities=14% Similarity=0.074 Sum_probs=46.2
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCC-----CCCCHHHHHHHHhCCChHHHHHHHH
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGT-----SYRTRDEIQEVRQTRDPISSLKDKI 76 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~-----~Yr~~~e~~~~~~~~DPi~~~~~~L 76 (91)
++|.-....++.++++..+..+|+..| .|....+|-. .|+.. .|+|.+.++.|. +.+....|.+.+
T Consensus 8 ~~vkpg~~~~~~~~~~~~~~~~r~epG--~l~~~~~~~~----~~p~~~~~~E~w~d~~a~~~h~-~s~~~~~~~~~~ 78 (106)
T 2gff_A 8 INVKEDKVDQFIEVFRANHLGSIREAG--NLRFDVLRDE----HIPTRFYIYEAYTDEAAVAIHK-TTPHYLQCVEQL 78 (106)
T ss_dssp EEBCGGGHHHHHHHHHHHHHHHHTSTT--EEEEEEEEES----SCTTEEEEEEEESSHHHHHHHT-TSHHHHHHHHHH
T ss_pred EEECcCCHHHHHHHHHHHHHHHhCCCC--cEEEEEEEcC----CCCCEEEEEEEECCHHHHHHHh-cCHHHHHHHHHH
Confidence 445545678888999999988886555 7777777743 23322 489999999987 456667776665
No 64
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=55.39 E-value=9.6 Score=26.30 Aligned_cols=20 Identities=10% Similarity=0.378 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCCCCHHHHhh
Q psy11439 70 SSLKDKILNASLVTPEELKR 89 (91)
Q Consensus 70 ~~~~~~L~~~g~~~~~e~~~ 89 (91)
.-+.+.|++.|++|++||++
T Consensus 78 ~ale~lLvekGvit~~EL~~ 97 (229)
T 3hht_B 78 ATVAYNLVDTGVLDEKELDE 97 (229)
T ss_dssp HHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHH
Confidence 45888999999999999976
No 65
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=55.03 E-value=10 Score=26.13 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCCCHHHHhh
Q psy11439 69 ISSLKDKILNASLVTPEELKR 89 (91)
Q Consensus 69 i~~~~~~L~~~g~~~~~e~~~ 89 (91)
|.-+.+.|+++|++|.+||++
T Consensus 73 l~ale~lLvekGvit~~EL~a 93 (226)
T 1ugp_B 73 IRTYIHHGVRTGKIDLEELER 93 (226)
T ss_dssp HHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHH
Confidence 345888999999999999975
No 66
>4dpo_A Conserved protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.73A {Methanosarcina mazei}
Probab=53.78 E-value=33 Score=20.43 Aligned_cols=68 Identities=7% Similarity=0.206 Sum_probs=48.6
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCC-----CCCCHHHHHHHHhCCChHHHHHHHHHH
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGT-----SYRTRDEIQEVRQTRDPISSLKDKILN 78 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~-----~Yr~~~e~~~~~~~~DPi~~~~~~L~~ 78 (91)
++|.-....++.++++..++..|+..| .|....+|-. .|+.. .|++.+.++.|. +.+-...|.+.+.+
T Consensus 32 ~~vkpg~~~~f~~~l~~~~~~~r~EpG--cl~y~l~~~~----~dp~~f~~~E~W~d~ea~~aH~-~s~~f~~~~~~~~~ 104 (119)
T 4dpo_A 32 NQVKPEKVQEFMNLCKSLIEETLKEEG--CIDYGVYQEL----ENPEILTMLEEWKDEGSLDQHI-RSDHFKEIFPLLSE 104 (119)
T ss_dssp EEBCTTTHHHHHHHHHHHHHHHHTSTT--EEEEEEEEET----TEEEEEEEEEEESSHHHHHHHH-TSHHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHHHHHHhcCCC--cEEEEEEEcC----CCCCEEEEEEEECCHHHHHHHH-cCHHHHHHHHHHHH
Confidence 456666888999999999999987665 6666666632 23222 489999999997 46667777776643
No 67
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=53.54 E-value=12 Score=28.26 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHHHHccC-CCEEEEE
Q psy11439 8 GMDILAVREAARFAVNHCRSDK-GPILLET 36 (91)
Q Consensus 8 G~D~~~v~~a~~~a~~~~R~~~-gP~lie~ 36 (91)
=.++..+...+..|+..+..++ ||+.|++
T Consensus 132 v~~~~~~~~~l~~A~~~a~~~~~GPV~l~i 161 (563)
T 2uz1_A 132 VMATEHIPRLVMQAIRAALSAPRGPVLLDL 161 (563)
T ss_dssp CCCGGGHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 3567788899999999999987 9999987
No 68
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=53.16 E-value=6.3 Score=18.17 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=11.1
Q ss_pred CCCHHHHHHHHhCCChHH
Q psy11439 53 YRTRDEIQEVRQTRDPIS 70 (91)
Q Consensus 53 Yr~~~e~~~~~~~~DPi~ 70 (91)
.-+++.+++|- ..||.+
T Consensus 12 mlspddi~qw~-s~dp~p 28 (28)
T 2b3g_B 12 MLSPDDIEQWF-TEDPGP 28 (28)
T ss_dssp GCCHHHHHHHH-HC----
T ss_pred hcChHHHHHHh-hcCCCC
Confidence 56999999998 489864
No 69
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=52.86 E-value=6.8 Score=29.53 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
++..+...+..|+..+..++||+.|++-
T Consensus 140 ~~~~~~~~l~~A~~~a~~~~GPV~l~iP 167 (566)
T 2vbi_A 140 DAHSAPAKIDHVIRTALRERKPAYLDIA 167 (566)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 4455667788888888888999999884
No 70
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=52.72 E-value=10 Score=28.59 Aligned_cols=30 Identities=13% Similarity=0.096 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 8 GMDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 8 G~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
=.++..+...+..|+..+..++ ||++|++-
T Consensus 138 v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP 168 (566)
T 1ozh_A 138 VTAPDALAEVVSNAFRAAEQGRPGSAFVSLP 168 (566)
T ss_dssp CCSGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 3567778889999999999985 99999873
No 71
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens}
Probab=52.57 E-value=13 Score=22.54 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHc-cCCCEEEEEe
Q psy11439 15 REAARFAVNHCRS-DKGPILLETA 37 (91)
Q Consensus 15 ~~a~~~a~~~~R~-~~gP~lie~~ 37 (91)
+..+-..++.+++ .++|++|+|.
T Consensus 70 ~~~~~~~i~~~~~~~~~~vlVHC~ 93 (151)
T 2e0t_A 70 FQTAADFIHRALSQPGGKILVHCA 93 (151)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEECS
T ss_pred HHHHHHHHHHHHhcCCCcEEEECC
Confidence 3333444455554 6899999994
No 72
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}
Probab=52.16 E-value=5.9 Score=24.15 Aligned_cols=21 Identities=5% Similarity=0.099 Sum_probs=14.4
Q ss_pred HHHHHHHHHHccCCCEEEEEe
Q psy11439 17 AARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 17 a~~~a~~~~R~~~gP~lie~~ 37 (91)
.+-.-++.+++.++|+||+|.
T Consensus 69 ~~~~fi~~~~~~~~~VlVHC~ 89 (145)
T 2nt2_A 69 DTYKFISKAKKHGSKCLVHSK 89 (145)
T ss_dssp HHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHHHHHcCCeEEEECC
Confidence 333445555667899999994
No 73
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=51.48 E-value=17 Score=27.60 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHHHHccC-CCEEEEE
Q psy11439 8 GMDILAVREAARFAVNHCRSDK-GPILLET 36 (91)
Q Consensus 8 G~D~~~v~~a~~~a~~~~R~~~-gP~lie~ 36 (91)
=.++.++..++.+|+..++.++ ||++|++
T Consensus 140 v~~~~~i~~~l~~A~~~a~~~~~GPV~l~i 169 (590)
T 1ybh_A 140 VMDVEDIPRIIEEAFFLATSGRPGPVLVDV 169 (590)
T ss_dssp CCCGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHhhCCCceEEEEe
Confidence 3567788999999999999885 9999987
No 74
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=50.59 E-value=11 Score=28.35 Aligned_cols=28 Identities=7% Similarity=0.077 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEE
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLET 36 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~ 36 (91)
.++..+...+..|+..+..++||+.|++
T Consensus 132 ~~~~~~~~~i~~A~~~A~~~~GPV~l~i 159 (549)
T 3eya_A 132 SSPEQIPQVLAIAMRKAVLNRGVSVVVL 159 (549)
T ss_dssp CSGGGHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhhCCCCEEEEe
Confidence 4677788888999999988999999987
No 75
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=50.37 E-value=9.9 Score=28.57 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
.++..+...+..|+..+..++||+.|++=
T Consensus 140 ~~~~~~~~~i~~A~~~A~~~~GPV~l~iP 168 (563)
T 2vk8_A 140 TDIATAPAEIDRCIRTTYVTQRPVYLGLP 168 (563)
T ss_dssp CCTTTHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 45556677778888888878899999873
No 76
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=50.11 E-value=10 Score=28.63 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
.++..+...+..|+..+..+.||+.|++-
T Consensus 156 ~~~~~~~~~i~~A~~~A~~~~GPV~l~iP 184 (565)
T 2nxw_A 156 DDPAKAPAEIARVLGAARAQSRPVYLEIP 184 (565)
T ss_dssp CCTTTHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 45566677788888888888899999985
No 77
>3e8o_A Uncharacterized protein with erredoxin-like fold; putative antibiotic biosynthesis monooxygenase; HET: MSE; 1.40A {Deinococcus radiodurans}
Probab=49.95 E-value=38 Score=20.02 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=48.4
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCC-----CCCCHHHHHHHHhCCChHHHHHHHHHH
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGT-----SYRTRDEIQEVRQTRDPISSLKDKILN 78 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~-----~Yr~~~e~~~~~~~~DPi~~~~~~L~~ 78 (91)
++|.-....++.++++..++..|+..| .|....+|-. .|+.. .|++.+.++.|. +.+-...|.+.+..
T Consensus 26 ~~vkpg~~~~~~~~l~~~~~~~r~EpG--cl~y~l~~~~----~dp~~f~~~E~W~d~ea~~aH~-~s~~~~~~~~~~~~ 98 (119)
T 3e8o_A 26 LSASAEHAAHLRQLLVHIAQATRQEDG--CLLYLVSEDL----SQPGHFLITEHWDNLGAMHTHL-ALPGVTQAIDALKH 98 (119)
T ss_dssp EECCTTTHHHHHHHHHHHHHHHTTSTT--EEEEEEEEET----TSTTEEEEEEEESSHHHHHHHH-TCHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHHHHhcCCC--cEEEEEEEcC----CCCCEEEEEEEECCHHHHHHHH-cCHHHHHHHHHHHH
Confidence 455666788999999999999987665 6666666632 33332 489999999997 46777777776643
No 78
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1vhr_A* 1j4x_A*
Probab=49.66 E-value=9.5 Score=24.09 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHcc-CCCEEEEEe
Q psy11439 11 ILAVREAARFAVNHCRSD-KGPILLETA 37 (91)
Q Consensus 11 ~~~v~~a~~~a~~~~R~~-~gP~lie~~ 37 (91)
+.+.+..+-..++.+++. ++|++|+|.
T Consensus 96 ~~~~~~~~~~~i~~~~~~~~~~VlVHC~ 123 (183)
T 3f81_A 96 LSAYFERAADFIDQALAQKNGRVLVHCR 123 (183)
T ss_dssp GGGGHHHHHHHHHHHHHSTTCCEEEECS
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 333344444555555555 899999994
No 79
>3cm3_A Late protein H1, dual specificity protein phosphatase; dual-specificity phosphatase, VH1, hydrolase; 1.32A {Vaccinia virus} PDB: 2rf6_A 2p4d_A
Probab=49.14 E-value=7.9 Score=24.52 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHccCCCEEEEEe
Q psy11439 16 EAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 16 ~a~~~a~~~~R~~~gP~lie~~ 37 (91)
..+-..++.++..++|+||+|.
T Consensus 95 ~~~~~~i~~~~~~~~~VlVHC~ 116 (176)
T 3cm3_A 95 DDVTAFLSKCDQRNEPVLVHSA 116 (176)
T ss_dssp HHHHHHHHHHHHHTCCEEEECS
T ss_pred HHHHHHHHHHHHCCCcEEEECC
Confidence 3444455566666899999994
No 80
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A
Probab=49.07 E-value=12 Score=23.12 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 11 ILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 11 ~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
+...+..+-.-++.++..++|+||+|.
T Consensus 67 l~~~~~~~~~fi~~~~~~~~~VlVHC~ 93 (155)
T 2hxp_A 67 LSRFFPEAIEFIDEALSQNCGVLVHSL 93 (155)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 333333334445555567899999994
No 81
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*
Probab=48.94 E-value=8.1 Score=23.53 Aligned_cols=27 Identities=7% Similarity=-0.121 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 11 ILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 11 ~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
..+.+..+-..++.+++.++|++|+|.
T Consensus 71 ~~~~~~~~~~~i~~~~~~~~~vlVHC~ 97 (157)
T 3rgo_A 71 TLANLHKGVQFALKYQALGQCVYVHCK 97 (157)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEESS
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 344444444555566666789999993
No 82
>1x7v_A PA3566 protein, APC5058; structural genomics, protein structure initiative, midwest center for structural genomics, alpha-beta plait, PSI; 1.78A {Pseudomonas aeruginosa} SCOP: d.58.4.11
Probab=48.84 E-value=33 Score=19.04 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=43.8
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCC-----CCCCHHHHHHHHhCCChHHHHHH
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGT-----SYRTRDEIQEVRQTRDPISSLKD 74 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~-----~Yr~~~e~~~~~~~~DPi~~~~~ 74 (91)
++|.-....++.++++..+...|+..| .|....+|-. .|+.. .|+|.+.++.|. +.+-...|.+
T Consensus 13 ~~vkpg~~~~~~~~~~~~~~~~~~epG--~l~~~~~~~~----~~p~~~~~~e~w~~~~a~~~h~-~s~~~~~~~~ 81 (99)
T 1x7v_A 13 ITAAPGHAEALERELRALVAPSRAEAG--CLQYDLHQDR----HDSHLFYMIEQWRDDAALERHQ-NTEHFLRFSR 81 (99)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHHHSTT--EEEEEEEECS----SCTTEEEEEEEESSHHHHHHHH-TSHHHHHHHT
T ss_pred EEECCCCHHHHHHHHHHHHHHHhCCCC--ceEEEEEecC----CCCCEEEEEEEECCHHHHHHHh-cCHHHHHHHH
Confidence 456566788899999999988887655 6666667743 23222 488999999987 3455455444
No 83
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}
Probab=48.77 E-value=9.4 Score=23.66 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHccCCCEEEEEe
Q psy11439 16 EAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 16 ~a~~~a~~~~R~~~gP~lie~~ 37 (91)
..+...++.++..++|+||+|.
T Consensus 71 ~~~~~~i~~~~~~~~~VlVHC~ 92 (160)
T 1yz4_A 71 KECINFIHCCRLNGGNCLVHSF 92 (160)
T ss_dssp HHHHHHHHHHHHTTCCEEEEET
T ss_pred HHHHHHHHHHHHcCCeEEEECC
Confidence 3334455555667899999994
No 84
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=48.16 E-value=18 Score=27.44 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=25.8
Q ss_pred eCCCHHHHHHHHHHHHHHHHccC-CCEEEEE
Q psy11439 7 DGMDILAVREAARFAVNHCRSDK-GPILLET 36 (91)
Q Consensus 7 DG~D~~~v~~a~~~a~~~~R~~~-gP~lie~ 36 (91)
.=.++..+...+..|+..+..++ ||+.|++
T Consensus 132 ~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 162 (589)
T 2pgn_A 132 RVERLDKVGEAIHEAFRVAEGHPAGPAYVDI 162 (589)
T ss_dssp ECCSGGGHHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred ecCCHHHHHHHHHHHHHHHhcCCCccEEEEe
Confidence 33577888999999999999988 9999987
No 85
>2omo_A DUF176; structural genomics, APC6266, PSI-2, protein structure initi midwest center for structural genomics, MCSG, oxidoreductas; HET: MSE; 1.83A {Nitrosomonas europaea} SCOP: d.58.4.11
Probab=47.94 E-value=42 Score=20.02 Aligned_cols=67 Identities=18% Similarity=0.288 Sum_probs=46.0
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCC-----CCCCHHHHHHHHhCCChHHHHHHHHH
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGT-----SYRTRDEIQEVRQTRDPISSLKDKIL 77 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~-----~Yr~~~e~~~~~~~~DPi~~~~~~L~ 77 (91)
++|.-....++.++++..++.+|+..| .|....+|-. .|+.. .|++.+.++.|. +.+-...|.+.+.
T Consensus 30 ~~vkpg~~~~f~~~l~~~~~~sr~EpG--cl~y~l~~~~----~dp~~f~~~E~W~d~eal~aH~-~s~~~~~~~~~~~ 101 (124)
T 2omo_A 30 ASVKTDKTEAFKEATRMNHEQSIREPG--NMRFDILQSA----DDPTRFVLYEAYKTRKDAAAHK-ETAHYLTWRDTVA 101 (124)
T ss_dssp EEBCGGGHHHHHHHHHHHHHHHTTSTT--EEEEEEEEES----SCTTEEEEEEEESSHHHHHHHT-TSHHHHHHHHHHG
T ss_pred EEECcCcHHHHHHHHHHHHHHHhcCCC--cEEEEEEEcC----CCCCEEEEEEEECCHHHHHHHh-CCHHHHHHHHHHH
Confidence 445445678888999999998887554 7777777632 23222 488999999987 4566666766653
No 86
>1q8b_A Protein YJCS; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG, unknown function; 1.90A {Bacillus subtilis} SCOP: d.58.4.6
Probab=47.62 E-value=38 Score=19.40 Aligned_cols=62 Identities=6% Similarity=0.125 Sum_probs=42.2
Q ss_pred EEee-CCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCC-----CCCCHHHHHHHHhCCChHHHH
Q psy11439 4 KEVD-GMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGT-----SYRTRDEIQEVRQTRDPISSL 72 (91)
Q Consensus 4 ~~vD-G~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~-----~Yr~~~e~~~~~~~~DPi~~~ 72 (91)
++|. |.|..++.+++...+...|+..| .|....+|-. .|+.. .|++.+.++.|. +.+-...|
T Consensus 20 ~~vkpg~d~~~f~~~l~~~~~~~r~epG--cl~~~~~~~~----~~p~~~~~~E~w~d~~a~~~H~-~s~~~~~~ 87 (105)
T 1q8b_A 20 LKIISDKDLNEIMKEFKKLEEETNKEEG--CITFHAYPLE----PSERKIMLWEIWENEEAVKIHF-TKKHTIDV 87 (105)
T ss_dssp EEECCCSCHHHHHHHHHHHHHHHTTSTT--EEEEEEEECC----GGGCEEEEEEEESSHHHHHHHT-TSHHHHHH
T ss_pred EEECCCCcHHHHHHHHHHHHHHHhcCCC--cEEEEEEEcC----CCCCEEEEEEEECCHHHHHHHh-cCHHHHHH
Confidence 3444 55699999999999999886554 7777777753 22222 489999999986 33333333
No 87
>2bbe_A Hypothetical protein SO0527; MCSG, structural genomics, PSI, protein structure in midwest center for structural genomics; 1.97A {Shewanella oneidensis}
Probab=47.12 E-value=39 Score=19.34 Aligned_cols=66 Identities=12% Similarity=0.109 Sum_probs=45.4
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCC-----CCCCHHHHHHHHhCCChHHH-HHHHH
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGT-----SYRTRDEIQEVRQTRDPISS-LKDKI 76 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~-----~Yr~~~e~~~~~~~~DPi~~-~~~~L 76 (91)
++|.-....++.+++...+...|+..| .|....+|-. .|+.. .|+|.+.++.|. +.+.... |.+.+
T Consensus 20 ~~vkpg~~~~f~~~~~~~~~~~~~epG--cl~~~~~~~~----~~p~~~~~~E~w~~~~a~~~H~-~s~~~~~~~~~~~ 91 (108)
T 2bbe_A 20 FLSKEGKTEALIAALASLIPDTRREAG--CIRYELNVSR----DEPRRVTFVEKFVDIAAFDEHC-AKDAIQHYFHQVM 91 (108)
T ss_dssp EEECTTCHHHHHHHHHTTHHHHHTSTT--EEEEEEEECS----SSTTEEEEEEEESSHHHHHHHH-TSHHHHHHHHHTH
T ss_pred EEECCCcHHHHHHHHHHHHHHHhcCCC--cEEEEEEecC----CCCCEEEEEEEECCHHHHHHHh-cChHHHHHHHHHH
Confidence 456666788899999999988887544 7777777743 23222 488999999987 4555555 55444
No 88
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=45.88 E-value=18 Score=20.69 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCCCHHHHhhh
Q psy11439 69 ISSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 69 i~~~~~~L~~~g~~~~~e~~~~ 90 (91)
+..+-.+|++.|++|+++.+.+
T Consensus 24 v~~lld~L~~~~vlt~~~~e~I 45 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEEEKV 45 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHH
Confidence 4557788999999999987754
No 89
>2q05_A Late protein H1, dual specificity protein phosphatase; structural genomics, APC7320, P protein structure initiative; HET: MSE; 2.57A {Vaccinia virus WR}
Probab=45.88 E-value=11 Score=24.52 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHccCCCEEEEEe
Q psy11439 15 REAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 15 ~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
+..+...++.+++.++|++|+|.
T Consensus 111 ~~~~~~~i~~~~~~~~~VlVHC~ 133 (195)
T 2q05_A 111 FDDVTAFLSKCDQRNEPVLVHCA 133 (195)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECS
T ss_pred HHHHHHHHHHHHHcCCcEEEEcC
Confidence 34455556666667899999994
No 90
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens}
Probab=45.08 E-value=7.1 Score=23.93 Aligned_cols=22 Identities=9% Similarity=0.119 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHccCCCEEEEEe
Q psy11439 16 EAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 16 ~a~~~a~~~~R~~~gP~lie~~ 37 (91)
..+...++.+++.+||+||+|.
T Consensus 77 ~~~~~~i~~~~~~~~~vlvHC~ 98 (154)
T 2r0b_A 77 PMTKEFIDGSLQMGGKVLVHGN 98 (154)
T ss_dssp HHHHHHHHHHHHTTCCEEEECS
T ss_pred HHHHHHHHHHHhcCCCEEEEcC
Confidence 3444455555667899999994
No 91
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens}
Probab=44.17 E-value=12 Score=24.01 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 13 AVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 13 ~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
..+..+-.-++.++..+||+||+|.
T Consensus 81 ~~~~~~~~fI~~~~~~~~~VLVHC~ 105 (188)
T 2esb_A 81 DFFDPIADHIHSVEMKQGRTLLHCA 105 (188)
T ss_dssp GGHHHHHHHHHHHHHTTCCEEEECS
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECC
Confidence 3333344455555667899999994
No 92
>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}
Probab=43.99 E-value=23 Score=20.86 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=20.5
Q ss_pred ChHHHHHHHHHHcCCCCHHHHhhh
Q psy11439 67 DPISSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 67 DPi~~~~~~L~~~g~~~~~e~~~~ 90 (91)
-|+.+-.-+|+++|+.|.+++|..
T Consensus 25 ~~~~~eA~~ll~eGva~~~dID~a 48 (110)
T 3ctv_A 25 FVEINEAVKLVEMGVATPQDIDTA 48 (110)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 577778888999999999999864
No 93
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=43.73 E-value=18 Score=27.20 Aligned_cols=28 Identities=18% Similarity=0.083 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHHHHcc-CCCEEEEE
Q psy11439 9 MDILAVREAARFAVNHCRSD-KGPILLET 36 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~-~gP~lie~ 36 (91)
.++..+...+..|+..+..+ .||+.|++
T Consensus 138 ~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 166 (564)
T 2q28_A 138 NQPQDLGIALARAIRVSVSGRPGGVYLDL 166 (564)
T ss_dssp CSGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 56777888999999999985 59999987
No 94
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Probab=43.44 E-value=27 Score=21.18 Aligned_cols=24 Identities=4% Similarity=-0.115 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHc----cCCCEEEEEe
Q psy11439 14 VREAARFAVNHCRS----DKGPILLETA 37 (91)
Q Consensus 14 v~~a~~~a~~~~R~----~~gP~lie~~ 37 (91)
....+..+.+..+. .++|++|+|.
T Consensus 90 ~~~~i~~~~~~~~~~~~~~~~~vlVHC~ 117 (167)
T 3s4o_A 90 WLKLLDTELARQQEDPSVPPPTIGVHCV 117 (167)
T ss_dssp HHHHHHHHHHHHHHCTTCCCCEEEEECS
T ss_pred HHHHHHHHHHHHhhccccCCCcEEEECC
Confidence 33334444444442 3899999993
No 95
>1y0h_A Hypothetical protein RV0793; ferredoxin-like fold, alpha+beta sandwich with antiparallel sheet, structural genomics, PSI; 1.60A {Mycobacterium tuberculosis} SCOP: d.58.4.11
Probab=43.25 E-value=42 Score=18.67 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=41.8
Q ss_pred EeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCC-----CCCCHHHHHHHHhCCChHHHHHHH
Q psy11439 5 EVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGT-----SYRTRDEIQEVRQTRDPISSLKDK 75 (91)
Q Consensus 5 ~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~-----~Yr~~~e~~~~~~~~DPi~~~~~~ 75 (91)
+|.-....++.++++..+...|+..| .|....+|- . |+.. .|++.+.++.|. +.+-...|.+.
T Consensus 13 ~vkpg~~~~~~~~~~~~~~~~~~epG--~l~~~~~~~-~----~~~~~~~~e~w~~~~a~~~h~-~s~~~~~~~~~ 80 (102)
T 1y0h_A 13 MPRPDARSALRALLDAMITPTRAEDG--CRSYDLYES-A----DGGELVLFERYRSRIALDEHR-GSPHYLNYRAQ 80 (102)
T ss_dssp CBCGGGHHHHHHHHHHHHHHHHHSTT--EEEEEEEEE-T----TSSCEEEEEEESSHHHHHHHH-TSHHHHHHHTT
T ss_pred EECCCcHHHHHHHHHHHHHHHhcCCC--cEEEEEEEe-C----CCCEEEEEEEECCHHHHHHHh-cChHHHHHHHH
Confidence 34444667888888888888887655 777777774 2 3222 488999999987 34444555443
No 96
>2j16_A SDP-1, tyrosine-protein phosphatase YIL113W; hydrolase, hypothetical protein; 2.7A {Saccharomyces cerevisiae} PDB: 2j17_A* 2j16_B
Probab=42.75 E-value=14 Score=24.01 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
.++...+..+..-++.++..+|++||+|.
T Consensus 97 ~~i~~~~~~~~~fI~~~~~~g~~VLVHC~ 125 (182)
T 2j16_A 97 SQIALDLPSLTSIIHAATTKREKILIHAQ 125 (182)
T ss_dssp GGGGGGHHHHHHHHHHHHHTTCCEEEEES
T ss_pred chHHHHHHHHHHHHHHHHhcCCeEEEECC
Confidence 33344444445556666667899999994
No 97
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded B-sheet, hydrolase; 2.80A {Homo sapiens}
Probab=42.25 E-value=22 Score=22.49 Aligned_cols=27 Identities=11% Similarity=0.011 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 11 ILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 11 ~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
+...+..+...++.++..++|+||+|.
T Consensus 69 l~~~~~~~~~~i~~~~~~~~~VlVHC~ 95 (177)
T 2oud_A 69 LRQYFEEAFEFIEEAHQCGKGLLIHCQ 95 (177)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence 333344444555666667899999994
No 98
>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A
Probab=41.92 E-value=24 Score=21.13 Aligned_cols=24 Identities=8% Similarity=-0.007 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 14 VREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 14 v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
....+-..++.++..++|++|+|.
T Consensus 73 ~~~~~~~~i~~~~~~~~~vlVHC~ 96 (150)
T 4erc_A 73 QIDRFVQIVDEANARGEAVGVHCA 96 (150)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHHHHHHHHCCCCEEEECC
Confidence 344445556666667899999993
No 99
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=41.52 E-value=22 Score=26.40 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLETA 37 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~~ 37 (91)
.++..+...+..|+..+..++ ||+.|++-
T Consensus 130 ~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 159 (528)
T 1q6z_A 130 ASAAEVPHAMSRAIHMASMAPQGPVYLSVP 159 (528)
T ss_dssp SSGGGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 467778889999999999876 79999884
No 100
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}
Probab=41.32 E-value=11 Score=23.63 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=13.7
Q ss_pred HHHHHHHHccCCCEEEEEe
Q psy11439 19 RFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 19 ~~a~~~~R~~~gP~lie~~ 37 (91)
-..++.++..++|+||+|.
T Consensus 73 ~~fi~~~~~~~~~VlVHC~ 91 (165)
T 1wrm_A 73 IKFIHECRLRGESCLVHCL 91 (165)
T ss_dssp HHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHHHCCCeEEEECC
Confidence 3455556667899999994
No 101
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=40.44 E-value=14 Score=28.11 Aligned_cols=28 Identities=7% Similarity=0.188 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEE
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLET 36 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~ 36 (91)
.++..+...+..|+..+...+||+.|++
T Consensus 141 ~~~~~~~~~i~~A~~~A~~~~GPV~l~i 168 (603)
T 4feg_A 141 VNAATLPHVIDEAIRRAYAHQGVAVVQI 168 (603)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 3555677777778877777899999987
No 102
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=40.19 E-value=31 Score=26.89 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHHHHHcc-CCCEEEEEe
Q psy11439 8 GMDILAVREAARFAVNHCRSD-KGPILLETA 37 (91)
Q Consensus 8 G~D~~~v~~a~~~a~~~~R~~-~gP~lie~~ 37 (91)
=.++..+...+.+|+..+..+ .||++|++=
T Consensus 210 v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP 240 (677)
T 1t9b_A 210 VKSVEELPLRINEAFEIATSGRPGPVLVDLP 240 (677)
T ss_dssp CCSGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHhhCCCceEEEEcC
Confidence 357788899999999999998 599999884
No 103
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=40.17 E-value=17 Score=25.13 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCCCCHHHHhhh
Q psy11439 70 SSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 70 ~~~~~~L~~~g~~~~~e~~~~ 90 (91)
..++..|+++|+++.+++++.
T Consensus 41 ~Al~~lL~eKG~i~~~~~~~~ 61 (226)
T 3qyh_A 41 KALESLLIEKGLVDPAAMDLV 61 (226)
T ss_dssp HHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHH
Confidence 358889999999999998865
No 104
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=39.82 E-value=22 Score=26.73 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHHHHcc-CCCEEEEE
Q psy11439 9 MDILAVREAARFAVNHCRSD-KGPILLET 36 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~-~gP~lie~ 36 (91)
.++..+...+..|+..+..+ .||+.|++
T Consensus 140 ~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 168 (568)
T 2c31_A 140 NSIKDIPIGIARAVRTAVSGRPGGVYVDL 168 (568)
T ss_dssp CSGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCCCceEEEeC
Confidence 56777888999999999985 59999977
No 105
>2pd1_A Hypothetical protein; unknown function, NE2512 protein, structural genomics, APC72 2, protein structure initiative; 1.86A {Nitrosomonas europaea} SCOP: d.58.4.11
Probab=39.75 E-value=50 Score=18.51 Aligned_cols=65 Identities=12% Similarity=0.095 Sum_probs=46.5
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCC-----CCCCHHHHHHHHhCCChHHHHHHHHH
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGT-----SYRTRDEIQEVRQTRDPISSLKDKIL 77 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~-----~Yr~~~e~~~~~~~~DPi~~~~~~L~ 77 (91)
++|.-....++.++++..++..|+..| .|....+|- |+.. .|++.+.++.|. +.+-...|.+.+.
T Consensus 12 ~~vkpg~~~~~~~~l~~~~~~~~~epG--~l~~~~~~~------~p~~~~~~E~w~~~~a~~~H~-~s~~~~~~~~~~~ 81 (104)
T 2pd1_A 12 LEAKPGQEAALADFLASALPLANAESG--TTAWFALKF------GPSTFGVFDAFADEAGRQAHL-NGQIAAALMANAA 81 (104)
T ss_dssp EEBCTTCHHHHHHHHHHTHHHHHTCTT--EEEEEEEEC------SSSEEEEEEEESSHHHHHHHH-TSHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHhCCCC--cEEEEEEec------CCCEEEEEEEECCHHHHHHHh-CCHHHHHHHHHHH
Confidence 455556778899999999999987555 777777775 3222 488999999987 4555666666553
No 106
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=39.72 E-value=25 Score=26.78 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHHHHccC-CCEEEEE
Q psy11439 9 MDILAVREAARFAVNHCRSDK-GPILLET 36 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~-gP~lie~ 36 (91)
.++..+-..+..|+..++.++ ||+.|++
T Consensus 157 ~~~~~i~~~l~~A~~~A~~~r~GPV~l~i 185 (616)
T 2pan_A 157 REAALVPRVLQQAFHLMRSGRPGPVLVDL 185 (616)
T ss_dssp CSGGGHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 456788889999999999874 9999987
No 107
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=39.17 E-value=19 Score=18.85 Aligned_cols=30 Identities=20% Similarity=0.105 Sum_probs=19.7
Q ss_pred HHHHhCCChHHHHHHHHHHcCCCCHHHHhhh
Q psy11439 60 QEVRQTRDPISSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 60 ~~~~~~~DPi~~~~~~L~~~g~~~~~e~~~~ 90 (91)
+.|+. ...+.-.-+..++.|-+|++|.+++
T Consensus 12 D~W~~-GT~~~~~mR~AV~~G~iTQ~E~D~I 41 (51)
T 2xf7_A 12 DSWLD-GTASEELLRVAVNAGDLTQEEADKI 41 (51)
T ss_dssp HHHHH-TCCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHhc-chhhHHHHHHHHhcCcccHHHHHHH
Confidence 56664 3344333344578899999998876
No 108
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=39.16 E-value=19 Score=25.03 Aligned_cols=20 Identities=10% Similarity=0.265 Sum_probs=17.8
Q ss_pred HHHHHHHHcCCCCHHHHhhh
Q psy11439 71 SLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 71 ~~~~~L~~~g~~~~~e~~~~ 90 (91)
.++..|+++|+++.+++++.
T Consensus 33 AL~~lL~eKGli~~~~~~~~ 52 (243)
T 2zzd_C 33 AVRELAIEKGLFSAEDHRVW 52 (243)
T ss_dssp HHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHH
Confidence 58889999999999999875
No 109
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}
Probab=38.76 E-value=33 Score=20.40 Aligned_cols=20 Identities=10% Similarity=0.021 Sum_probs=13.2
Q ss_pred HHHHHHHHHccCCCEEEEEe
Q psy11439 18 ARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 18 ~~~a~~~~R~~~gP~lie~~ 37 (91)
+-..++.++..++|++|+|.
T Consensus 78 ~~~~i~~~~~~~~~vlVHC~ 97 (151)
T 2img_A 78 FVQIVDEANARGEAVGVHCA 97 (151)
T ss_dssp HHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHHHhCCCcEEEECC
Confidence 33344445556899999994
No 110
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=37.78 E-value=24 Score=26.76 Aligned_cols=33 Identities=6% Similarity=-0.078 Sum_probs=26.6
Q ss_pred eCCCHHHHHHHHHHHHHHHHccC-CCEEEEEeeecC
Q psy11439 7 DGMDILAVREAARFAVNHCRSDK-GPILLETATYRY 41 (91)
Q Consensus 7 DG~D~~~v~~a~~~a~~~~R~~~-gP~lie~~tyR~ 41 (91)
.=.++.++...+..|+..+..++ ||++| + ..+.
T Consensus 132 ~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-i-P~dv 165 (590)
T 1v5e_A 132 RVAYAEQLPKLVDEAARMAIAKRGVAVLE-V-PGDF 165 (590)
T ss_dssp ECCSGGGHHHHHHHHHHHHHHTTSEEEEE-E-ETTG
T ss_pred EeCCHHHHHHHHHHHHHHHhcCCCceEEE-E-ccch
Confidence 33577788899999999999998 99999 4 4444
No 111
>3gz7_A Putative antibiotic biosynthesis monooxygenase; NP_888398.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 2.15A {Bordetella bronchiseptica}
Probab=37.58 E-value=64 Score=19.10 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=45.1
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCC-----CCCCHHHHH-HHHhCCChHHHHHHHH
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGT-----SYRTRDEIQ-EVRQTRDPISSLKDKI 76 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~-----~Yr~~~e~~-~~~~~~DPi~~~~~~L 76 (91)
++|.-....++.++++.++...|+..| .|....+|- ..|+.. .|+|.+.++ .|. +.+-...+.+.+
T Consensus 27 ~~vkpg~~~~f~~~~~~~~~~~r~epG--cl~y~l~r~----~~~p~~f~~~E~W~s~eal~~hf~-~S~hf~~~~~~~ 98 (115)
T 3gz7_A 27 ILVQPGREADFEAGVAQARPLFMRARG--CHGVALHRS----IEAPQRYTLVVDWETVDNHMVDFR-QSADFQEWRKLV 98 (115)
T ss_dssp EEBCTTCHHHHHHHHHHHHHHHHTSTT--EEEEEEEEE----SSSTTEEEEEEEESSHHHHHTTTT-TSHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHHHHhcCCC--eEEEEEEec----CCCCCEEEEEEEECCHHHHHHHHh-cCHHHHHHHHHH
Confidence 556666778899999999999988766 776666773 234333 378988887 566 345555555554
No 112
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=37.36 E-value=21 Score=20.80 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=15.6
Q ss_pred HHHHHHHcCCCCHHHHhhh
Q psy11439 72 LKDKILNASLVTPEELKRE 90 (91)
Q Consensus 72 ~~~~L~~~g~~~~~e~~~~ 90 (91)
+-.+|+++|++|+++.+.+
T Consensus 26 vld~L~~~~vlt~~~~e~I 44 (97)
T 3ygs_P 26 LWDVLLSRELFRPHMIEDI 44 (97)
T ss_dssp THHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHH
Confidence 5567999999999988754
No 113
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=36.83 E-value=1.2e+02 Score=21.86 Aligned_cols=60 Identities=7% Similarity=0.030 Sum_probs=41.9
Q ss_pred ceEEeeC--CCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCC-CCCCCCCCHHHHHHHH
Q psy11439 2 ENKEVDG--MDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS-DPGTSYRTRDEIQEVR 63 (91)
Q Consensus 2 ~~~~vDG--~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~-D~~~~Yr~~~e~~~~~ 63 (91)
.++=+|| .++++=.+.+++.+++|+.-+ +-||+..=++.|.... +....|.+|+|...+-
T Consensus 100 tSVMiDgS~~p~eENi~~Tk~vv~~ah~~g--vsVEaELG~vgg~Ed~v~~~~~yTdPeea~~Fv 162 (323)
T 2isw_A 100 SSVMIDASHHPFDENVRITKEVVAYAHARS--VSVEAELGTLGGIEEDVQNTVQLTEPQDAKKFV 162 (323)
T ss_dssp SEEEECCTTSCHHHHHHHHHHHHHHHHTTT--CEEEEEESCC----------CCCCCHHHHHHHH
T ss_pred CeEEecCCCCCHHHHHHHHHHHHHHHHHcC--CeEEEEeCCccCCccCcccccccCCHHHHHHHH
Confidence 4566788 478899999999999999865 7889988888874321 2233599999987764
No 114
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=36.61 E-value=23 Score=24.26 Aligned_cols=22 Identities=9% Similarity=0.332 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCCCHHHHhhh
Q psy11439 69 ISSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 69 i~~~~~~L~~~g~~~~~e~~~~ 90 (91)
...++..|+++|+++.+.+++.
T Consensus 29 ~~Al~~ll~ekg~i~~~~~~~~ 50 (216)
T 3hht_A 29 AKALESLLIEKGHLSSDAIERV 50 (216)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHH
Confidence 3468899999999999998864
No 115
>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}
Probab=36.21 E-value=20 Score=23.73 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=13.2
Q ss_pred HHHHHHHH-ccCCCEEEEEe
Q psy11439 19 RFAVNHCR-SDKGPILLETA 37 (91)
Q Consensus 19 ~~a~~~~R-~~~gP~lie~~ 37 (91)
-..++.++ ..+||+||+|.
T Consensus 128 ~~fI~~~l~~~~~~VLVHC~ 147 (219)
T 2y96_A 128 AAFIDRALSDDHSKILVHCV 147 (219)
T ss_dssp HHHHHHHHTSTTCCEEEECS
T ss_pred HHHHHHHHHccCCeEEEECC
Confidence 34455555 56899999994
No 116
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=36.14 E-value=45 Score=24.13 Aligned_cols=41 Identities=17% Similarity=0.133 Sum_probs=34.3
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCC
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 46 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~ 46 (91)
..+.-.++.+++..+..|++.+++.+.|+++-...+ + +|+.
T Consensus 153 ~vl~p~~~qea~~l~~~A~~lA~~~~~PVi~~~~~~-l-~h~~ 193 (395)
T 1yd7_A 153 IVLSPSTVQEAFDFTIRAFNLSEKYRTPVILLTDAE-V-GHMR 193 (395)
T ss_dssp EEECCCSHHHHHHHHHHHHHHHHHHTSEEEEEECHH-H-HHCE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEcchh-H-hCee
Confidence 455667899999999999999999999999988775 3 6664
No 117
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}
Probab=35.49 E-value=31 Score=18.43 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=16.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHcC
Q psy11439 58 EIQEVRQTRDPISSLKDKILNAS 80 (91)
Q Consensus 58 e~~~~~~~~DPi~~~~~~L~~~g 80 (91)
++..-+ -.|||..+..||++..
T Consensus 27 ~lak~r-P~DPi~~LA~~Ll~~~ 48 (55)
T 3g36_A 27 VLAKER-PPNPIEFLASYLLKNK 48 (55)
T ss_dssp HHHHHC-CSCHHHHHHHHHHHHG
T ss_pred HHHHhC-CCCHHHHHHHHHHHhC
Confidence 444433 5799999999999753
No 118
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specifici phosphatase; 1.88A {Homo sapiens}
Probab=35.45 E-value=20 Score=23.08 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHccCCCEEEEEe
Q psy11439 16 EAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 16 ~a~~~a~~~~R~~~gP~lie~~ 37 (91)
..+...++.++..++|+||+|.
T Consensus 90 ~~~~~fi~~~~~~~~~VlVHC~ 111 (190)
T 2wgp_A 90 DTVADKIHSVSRKHGATLVHCA 111 (190)
T ss_dssp HHHHHHHHHHHHTTCCEEEECS
T ss_pred HHHHHHHHHHHhcCCCEEEECC
Confidence 3344455555567899999994
No 119
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Probab=35.11 E-value=28 Score=21.62 Aligned_cols=31 Identities=16% Similarity=0.016 Sum_probs=20.4
Q ss_pred EEeeCCCH--HHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 4 KEVDGMDI--LAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 4 ~~vDG~D~--~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
+.+|..|+ .+|.+++..+.+ +.|+ |+||.|.
T Consensus 73 i~~Dv~~~~~~~v~~~~~~i~~--~~G~-dVLVnnA 105 (157)
T 3gxh_A 73 IPVDWQNPKVEDVEAFFAAMDQ--HKGK-DVLVHCL 105 (157)
T ss_dssp CCCCTTSCCHHHHHHHHHHHHH--TTTS-CEEEECS
T ss_pred ecCCCCCCCHHHHHHHHHHHHh--cCCC-CEEEECC
Confidence 34577777 777666665543 2344 9999985
No 120
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=34.49 E-value=63 Score=19.42 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=22.1
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCCCE
Q psy11439 7 DGMDILAVREAARFAVNHCRSDKGPI 32 (91)
Q Consensus 7 DG~D~~~v~~a~~~a~~~~R~~~gP~ 32 (91)
+|.++..++..+..|+..+++.++..
T Consensus 145 ~~~~~~~ll~~A~~Al~~ak~~g~~~ 170 (177)
T 3hva_A 145 KTAKAQDVMNRAHRCADDAARKGGSQ 170 (177)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTCSSE
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCe
Confidence 57899999999999999999865543
No 121
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=34.29 E-value=30 Score=26.03 Aligned_cols=26 Identities=4% Similarity=0.103 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 12 LAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 12 ~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
..+...+..|+..+..++||+.|++-
T Consensus 163 ~~~~~~l~~A~~~A~~~~GPV~l~iP 188 (570)
T 2vbf_A 163 ENATYEIDRVLSQLLKERKPVYINLP 188 (570)
T ss_dssp TTHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred ccHHHHHHHHHHHHhhCCCCEEEEcc
Confidence 45566777777777778899999983
No 122
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=34.25 E-value=27 Score=23.67 Aligned_cols=22 Identities=14% Similarity=0.406 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCCCCHHHHhhh
Q psy11439 69 ISSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 69 i~~~~~~L~~~g~~~~~e~~~~ 90 (91)
...++.-|+++|+++.++++..
T Consensus 20 ~~AL~~lL~eKGli~~~~id~~ 41 (203)
T 1ugp_A 20 VKALESMLIEQGILTTSMIDRM 41 (203)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHH
Confidence 3468899999999999998864
No 123
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=34.10 E-value=27 Score=21.96 Aligned_cols=21 Identities=5% Similarity=-0.015 Sum_probs=17.4
Q ss_pred HHHHHHHHHccCCCEEEEEee
Q psy11439 18 ARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 18 ~~~a~~~~R~~~gP~lie~~t 38 (91)
..+|++.+++.++|+||.+..
T Consensus 31 ~~~Al~~Ak~~~K~vlvd~~a 51 (153)
T 2dlx_A 31 FETAKECGQMQNKWLMINIQN 51 (153)
T ss_dssp HHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHcCCeEEEEEEC
Confidence 467888889999999999853
No 124
>1tuv_A Protein YGIN; menadione oxidase, monooxygenase, CO-crystal with natural PR ferredoxin fold, unknown function; HET: VK3; 1.70A {Escherichia coli} SCOP: d.58.4.11 PDB: 1r6y_A
Probab=33.54 E-value=73 Score=18.54 Aligned_cols=70 Identities=11% Similarity=0.078 Sum_probs=46.2
Q ss_pred EEeeCC--CHHHHHHHHHHHHHHHHccCCCEEEEEeeecC--CCCC--CCCCCC-----CCCCHHHHHHHHhCCChHHHH
Q psy11439 4 KEVDGM--DILAVREAARFAVNHCRSDKGPILLETATYRY--SGHS--MSDPGT-----SYRTRDEIQEVRQTRDPISSL 72 (91)
Q Consensus 4 ~~vDG~--D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~--~gHs--~~D~~~-----~Yr~~~e~~~~~~~~DPi~~~ 72 (91)
++|.-. ...++.++++..+..+|+..| .|....+|- .|++ ..|+.. .|+|.+.++.|. +.+-...|
T Consensus 8 ~~vkpg~~~~~~f~~~l~~~~~~~r~EpG--cl~y~~~~~~~~~~~~~~~~p~~~~~~E~W~d~~al~aH~-~s~h~~~~ 84 (114)
T 1tuv_A 8 IRTRPGQHHRQAVLDQFAKIVPTVLKEEG--CHGYAPMVDCAAGVSFQSMAPDSIVMIEQWESIAHLEAHL-QTPHMKAY 84 (114)
T ss_dssp EEECSSTTHHHHHHHHHHHHHHHHHHSTT--EEEEEEECCCCCCCTTCCCCTTEEEEEEEESCHHHHHHHH-TSHHHHHH
T ss_pred EEECCCcchHHHHHHHHHHHHHHHccCCC--cEEEEEEecccccccccCCCCCEEEEEEEECCHHHHHHHh-cCHHHHHH
Confidence 344444 678888999999998887665 777777774 1221 223222 489999999997 45566666
Q ss_pred HHHH
Q psy11439 73 KDKI 76 (91)
Q Consensus 73 ~~~L 76 (91)
.+.+
T Consensus 85 ~~~~ 88 (114)
T 1tuv_A 85 SEAV 88 (114)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 125
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=33.24 E-value=1.3e+02 Score=21.39 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=44.9
Q ss_pred ceEEeeC--CCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCC----CCCCCCCCHHHHHHHH
Q psy11439 2 ENKEVDG--MDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS----DPGTSYRTRDEIQEVR 63 (91)
Q Consensus 2 ~~~~vDG--~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~----D~~~~Yr~~~e~~~~~ 63 (91)
.++=+|| .++++=.+.+++.+++|+.-+ +-||+..=++.|.... +....|.+|+|...+-
T Consensus 97 tSVMiDgS~~p~eENi~~Tk~vv~~ah~~g--vsVEaELG~vgg~Ed~~~~~~~~~~yT~Peea~~Fv 162 (305)
T 1rvg_A 97 TSVMIDKSHEDFETNVRETRRVVEAAHAVG--VTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFM 162 (305)
T ss_dssp SEEEECCTTSCHHHHHHHHHHHHHHHHHTT--CEEEEEESCCCCSCC------CCTTCCCHHHHHHHH
T ss_pred CeeeeCCCCCCHHHHHHHHHHHHHHHHHcC--CEEEEEEeeccCccCCccccccccccCCHHHHHHHH
Confidence 4566787 578899999999999999855 7889998888875421 1223599999987764
No 126
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=33.00 E-value=48 Score=20.05 Aligned_cols=27 Identities=7% Similarity=-0.001 Sum_probs=22.6
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCCCEE
Q psy11439 7 DGMDILAVREAARFAVNHCRSDKGPIL 33 (91)
Q Consensus 7 DG~D~~~v~~a~~~a~~~~R~~~gP~l 33 (91)
+|.++.+++..+..|+..+++.++-.+
T Consensus 140 ~~~~~~~ll~~A~~Al~~Ak~~g~n~~ 166 (177)
T 3ign_A 140 TPENYMQWMQKADEALYKAKESGRNKV 166 (177)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHTTSSSE
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCcE
Confidence 578999999999999999998665433
No 127
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=32.82 E-value=54 Score=19.63 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.0
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCCCEE
Q psy11439 7 DGMDILAVREAARFAVNHCRSDKGPIL 33 (91)
Q Consensus 7 DG~D~~~v~~a~~~a~~~~R~~~gP~l 33 (91)
+|.++.+++..+..|+..+++.++-.+
T Consensus 131 ~~~~~~~ll~~A~~Al~~ak~~g~~~~ 157 (171)
T 3icl_A 131 DGETMEQLLRNADTAMYHAKSRGKNNY 157 (171)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHCSSEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCcE
Confidence 578999999999999999998776543
No 128
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A
Probab=32.52 E-value=37 Score=20.45 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=13.5
Q ss_pred HHHHHHHHHHc-cCCCEEEEEe
Q psy11439 17 AARFAVNHCRS-DKGPILLETA 37 (91)
Q Consensus 17 a~~~a~~~~R~-~~gP~lie~~ 37 (91)
.+..+++.+.+ .++|++++|.
T Consensus 79 ~~~~~~~~i~~~~~~~vlvHC~ 100 (151)
T 1xri_A 79 KIRMALKVLLDEKNHPVLIHCK 100 (151)
T ss_dssp HHHHHHHHHHCGGGCSEEEECS
T ss_pred HHHHHHHHHHcCCCCCEEEECC
Confidence 34444555443 5789999994
No 129
>4axi_A EUTS, ethanolamine carboxysome structural protein; bacterial microcompartment; HET: GOL; 1.51A {Clostridium difficile}
Probab=31.92 E-value=36 Score=21.25 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=21.8
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCC
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKG 30 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~g 30 (91)
+.+-| |+.+|-+|+..+++.+.+.-|
T Consensus 83 vii~G-DVsaV~aAvea~~~~~~~~~g 108 (125)
T 4axi_A 83 VVISG-DVSSVESALNDVLEVLGNMLN 108 (125)
T ss_dssp EEEEE-CHHHHHHHHHHHHHHHHTTSC
T ss_pred EEEEE-eHHHHHHHHHHHHHHHhhcCc
Confidence 45677 999999999999999877655
No 130
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=31.78 E-value=61 Score=24.39 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHcc-CCCEEEEEe
Q psy11439 14 VREAARFAVNHCRSD-KGPILLETA 37 (91)
Q Consensus 14 v~~a~~~a~~~~R~~-~gP~lie~~ 37 (91)
+..++.+|+..+..+ .||++|++=
T Consensus 152 i~~~l~~A~~~A~~gr~GPV~l~iP 176 (578)
T 3lq1_A 152 AKWHGSRAVDIAMKTPRGPVHLNFP 176 (578)
T ss_dssp HHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred HHHHHHHHHHHhhCCCCCcEEEECc
Confidence 345788999999988 599999984
No 131
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens}
Probab=31.60 E-value=25 Score=23.32 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHccCCCEEEEEe
Q psy11439 15 REAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 15 ~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
+..+-+-++.+++.++|+||+|.
T Consensus 69 ~~~~~~fI~~~~~~~~~VLVHC~ 91 (211)
T 2g6z_A 69 FQEAIDFIDCVREKGGKVLVHSE 91 (211)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHHHhcCCeEEEECC
Confidence 33444555556667899999994
No 132
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=31.38 E-value=73 Score=22.97 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHccCCCEEEEEeeecC
Q psy11439 13 AVREAARFAVNHCRSDKGPILLETATYRY 41 (91)
Q Consensus 13 ~v~~a~~~a~~~~R~~~gP~lie~~tyR~ 41 (91)
...+-+....+.|++.+-|+|+|+.+|-.
T Consensus 144 ~q~~~l~rv~~ec~~~GiPlllEil~y~~ 172 (332)
T 3iv3_A 144 QKQAYIERIGSECQAEDIPFFLEILTYDE 172 (332)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEEECBT
T ss_pred HHHHHHHHHHHHHHHcCCceEEEEeccCC
Confidence 45667788888999999999999999765
No 133
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=31.29 E-value=26 Score=20.38 Aligned_cols=19 Identities=5% Similarity=0.218 Sum_probs=14.9
Q ss_pred HHHHHHHcCCCCHHHHhhh
Q psy11439 72 LKDKILNASLVTPEELKRE 90 (91)
Q Consensus 72 ~~~~L~~~g~~~~~e~~~~ 90 (91)
+-.+|++.|++|+++.+.+
T Consensus 26 lld~L~~~~VLt~~~~e~I 44 (100)
T 3crd_A 26 VLQYLYQEGILTENHIQEI 44 (100)
T ss_dssp SHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHH
Confidence 3445999999999988764
No 134
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=31.29 E-value=54 Score=16.41 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=13.8
Q ss_pred HHHHHHH-cCCCCHHHHhhhC
Q psy11439 72 LKDKILN-ASLVTPEELKREL 91 (91)
Q Consensus 72 ~~~~L~~-~g~~~~~e~~~~~ 91 (91)
|++.+-+ ..-+|++||++.+
T Consensus 12 ~~~ei~~RNrpltDEeLD~mL 32 (39)
T 3lqv_P 12 WEREIDERNRPLSDEELDAMF 32 (39)
T ss_dssp HHHHHHHTTCCCCHHHHHHTC
T ss_pred hhccchhhcCCCCHHHHHHhC
Confidence 4555544 4478999999864
No 135
>3qyy_A Response regulator; C-DI-GMP, DGC, ggdef, competitive inhibition, xanthomonas Ca signaling protein-inhibitor complex; HET: C2E; 1.90A {Xanthomonas campestris PV}
Probab=30.97 E-value=71 Score=19.07 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=23.3
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCCCEEE
Q psy11439 7 DGMDILAVREAARFAVNHCRSDKGPILL 34 (91)
Q Consensus 7 DG~D~~~v~~a~~~a~~~~R~~~gP~li 34 (91)
++.++.+++..+..|+..+++.++..++
T Consensus 137 ~~~~~~~ll~~A~~Al~~Ak~~g~~~~~ 164 (167)
T 3qyy_A 137 VGIDATELYRRADAAMYRAKFSGGRRLV 164 (167)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTSSEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCcee
Confidence 3578999999999999999987776554
No 136
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O
Probab=30.52 E-value=1.4e+02 Score=20.93 Aligned_cols=36 Identities=8% Similarity=-0.199 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCC
Q psy11439 8 GMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSM 46 (91)
Q Consensus 8 G~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~ 46 (91)
..+-..+.+.+.++++.+++.+-|+++| ++| .+|..
T Consensus 150 s~~~~~~l~~i~~v~~~a~~~GlpvIie--~~~-G~~~~ 185 (295)
T 3glc_A 150 SEYEHQSIKNIIQLVDAGMKVGMPTMAV--TGV-GKDMV 185 (295)
T ss_dssp STTHHHHHHHHHHHHHHHHTTTCCEEEE--ECC-----C
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCEEEEE--CCC-CCccC
Confidence 4456678888899999999888999997 354 45543
No 137
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=30.18 E-value=40 Score=21.04 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=16.2
Q ss_pred HHHHHHHHHccCCCEEEEEe
Q psy11439 18 ARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 18 ~~~a~~~~R~~~gP~lie~~ 37 (91)
..+|++.+.+.++|+||.+-
T Consensus 33 ~~~al~~A~~~~KpVlV~F~ 52 (151)
T 3ph9_A 33 YEEGLFYAQKSKKPLMVIHH 52 (151)
T ss_dssp HHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHcCCcEEEEEE
Confidence 45677788888999999884
No 138
>3bm7_A Protein of unknown function with ferredoxin-like; ferredoxin-like fold, antibiotic biosynthesis monooxygenase, structural genomics; HET: MSE; 1.35A {Caulobacter crescentus}
Probab=29.89 E-value=85 Score=18.22 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=44.6
Q ss_pred EEeeCCCHHHHHHHHHHHH-HHHHccCCCEEEEEeeecCCCCCCCCCCC-----CCCCHHHHHHHHhCCChHHHHHHHH
Q psy11439 4 KEVDGMDILAVREAARFAV-NHCRSDKGPILLETATYRYSGHSMSDPGT-----SYRTRDEIQEVRQTRDPISSLKDKI 76 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~-~~~R~~~gP~lie~~tyR~~gHs~~D~~~-----~Yr~~~e~~~~~~~~DPi~~~~~~L 76 (91)
++|.-....++.+++...+ ..+|+..| .|....+|-. .|+.. .|+|.+.++.|.+ .+-...|.+.+
T Consensus 27 ~~vkpg~~~~f~~~l~~~~~~~~r~EpG--cl~y~l~~~~----~~p~~f~~~E~W~d~ea~~aH~~-s~~~~~~~~~~ 98 (115)
T 3bm7_A 27 LKVQPAKAAEFEKVFLDLAAKVKANEPG--CLVYQLTRSK----TEEGVYKVLELYASMDALKHHGG-TDYFKAAGAAM 98 (115)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHHHHCTT--EEEEEEEECS----SSTTEEEEEEEESSHHHHHHHHH-CHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHHHHhcCCCC--cEEEEEEEcC----CCCCEEEEEEEECCHHHHHHHhC-CHHHHHHHHHH
Confidence 3454456678888888888 66677655 7777777743 23222 4889999999974 56666676654
No 139
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=29.86 E-value=39 Score=25.19 Aligned_cols=26 Identities=8% Similarity=-0.045 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 12 LAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 12 ~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
..+...+..|+..+..++||+.|++-
T Consensus 143 ~~~~~~i~~A~~~a~~~~GPV~l~iP 168 (552)
T 1ovm_A 143 QNACYEIDRVLTTMLRERRPGYLMLP 168 (552)
T ss_dssp TTHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred ccHHHHHHHHHHHHHhCCCCEEEEee
Confidence 34556667777777777899999983
No 140
>4hl9_A Antibiotic biosynthesis monooxygenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.93A {Rhodospirillum rubrum}
Probab=29.25 E-value=70 Score=19.10 Aligned_cols=66 Identities=18% Similarity=0.143 Sum_probs=44.2
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCC-----CCCCHHHHHHHHhCCChHHHHHHHH
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGT-----SYRTRDEIQEVRQTRDPISSLKDKI 76 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~-----~Yr~~~e~~~~~~~~DPi~~~~~~L 76 (91)
++|.-....++.+++++.++..|+..| -|....+|- ..|+.. .|++.+.++.+.+ .+-...|...+
T Consensus 30 ~~vkP~~~d~~~~~~~~l~~~tr~EpG--cl~y~l~~d----~~dp~~f~~~E~w~d~~al~~H~~-s~h~~~~~~~l 100 (118)
T 4hl9_A 30 DFIKPEAIDIVLPLYRELVEKTRQEPL--CLAYDLFVD----QKDPGHFVFIEEWPDRAALDIHCA-TEHFTRLVPLI 100 (118)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHHTSTT--CCEEEEEEE----TTEEEEEEEEEEESSHHHHHHHHH-SHHHHHHHHHH
T ss_pred EEECchhHHHHHHHHHHHHHHHhcCCC--cEEEEEEEc----CCCCCEEEEEEEeCCHHHHHHHHC-CHHHHHHHHHH
Confidence 455556788999999999999998776 333344442 223222 4899999998874 55556665554
No 141
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=29.03 E-value=55 Score=24.82 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHcc-CCCEEEEEe
Q psy11439 14 VREAARFAVNHCRSD-KGPILLETA 37 (91)
Q Consensus 14 v~~a~~~a~~~~R~~-~gP~lie~~ 37 (91)
+...+.+|+..+..+ .||++|++=
T Consensus 172 ~~~~i~~A~~~A~~~~~GPV~l~iP 196 (604)
T 2x7j_A 172 IRTLASRAAGEAQKRPMGPVHVNVP 196 (604)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHHHHHHHHHhhCCCCCcEEEEcc
Confidence 778889999999985 599999884
No 142
>3cgi_A Propanediol utilization protein PDUU; circular permutation, beta barrel, bacterial microcompartmen propanediol, signaling protein; 1.80A {Salmonella typhimurium}
Probab=28.22 E-value=51 Score=20.44 Aligned_cols=38 Identities=18% Similarity=0.110 Sum_probs=25.8
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEE-eeecCCCC
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLET-ATYRYSGH 44 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~-~tyR~~gH 44 (91)
+.+-| |+.+|..|+..+++.+.+.-| |.-| .|-|+-.|
T Consensus 82 v~i~G-dvsaV~aAvea~~~~~~~~~g--f~~~~~~~~~~~~ 120 (124)
T 3cgi_A 82 VVLTG-DVSAVEYALKQVTRTLGEMMQ--FTTCSITRTLEHH 120 (124)
T ss_dssp EEEEE-CHHHHHHHHHHHHHHHHHHHC--CEECCCEEECC--
T ss_pred EEEEE-CHHHHHHHHHHHHHHHHhccC--cEecchhhhhhhc
Confidence 45667 999999999999998877655 4444 34444443
No 143
>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein, endotoxin, lipid binding protein; NMR {Penaeus monodon}
Probab=28.08 E-value=51 Score=19.94 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=18.8
Q ss_pred ChHHHHHHHHHHcCCCCHHHHhh
Q psy11439 67 DPISSLKDKILNASLVTPEELKR 89 (91)
Q Consensus 67 DPi~~~~~~L~~~g~~~~~e~~~ 89 (91)
..+..|-+.-++.|++|+++.+.
T Consensus 76 ~a~rDFV~KA~~~gLiT~edA~~ 98 (102)
T 2job_A 76 KTAKDFVRKAFQKGLISQQEANQ 98 (102)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHH
T ss_pred hHHHHHHHHHHHcCCccHHHHHH
Confidence 45667888889999999998764
No 144
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=28.01 E-value=24 Score=24.02 Aligned_cols=20 Identities=15% Similarity=0.024 Sum_probs=17.5
Q ss_pred HHHHHHHHcCCCCHHHHhhh
Q psy11439 71 SLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 71 ~~~~~L~~~g~~~~~e~~~~ 90 (91)
.++..|+++|+++.++++..
T Consensus 25 Al~~ll~ekG~i~~~~~~~~ 44 (207)
T 3a8g_A 25 ALFRALDGKGLVPDGYVEGW 44 (207)
T ss_dssp HHHHHHHTTTCSCTTHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHH
Confidence 58889999999999988764
No 145
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=27.58 E-value=53 Score=27.72 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q psy11439 9 MDILAVREAARFAVNHCRSDKGPILLETAT 38 (91)
Q Consensus 9 ~D~~~v~~a~~~a~~~~R~~~gP~lie~~t 38 (91)
.++.++..++++|+++ +||+||++.+
T Consensus 1043 ~~~~~l~~al~eAl~~----~GP~lI~v~~ 1068 (1231)
T 2c42_A 1043 YSKQQFLKVLKEAESF----PGPSLVIAYA 1068 (1231)
T ss_dssp TCHHHHHHHHHHHHHS----SSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHhc----CCCEEEEEee
No 146
>1m5s_A Formylmethanofuran--tetrahydromethanopterin formyltransferase; alpha/beta sandwich; 1.85A {Methanosarcina barkeri} SCOP: d.58.33.1 d.58.33.1
Probab=26.94 E-value=85 Score=22.46 Aligned_cols=28 Identities=14% Similarity=0.317 Sum_probs=23.5
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHccCC
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSDKG 30 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~~g 30 (91)
=+.+||.|..+|-+|++..++-+-+-.|
T Consensus 246 EIVIdGl~~~aV~~AmraGi~Aa~~~~G 273 (297)
T 1m5s_A 246 EIVINGLDEESIKAAMKAGIKAAVTVPG 273 (297)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHTTSTT
T ss_pred EEEEcCCCHHHHHHHHHHHHHHHhccCC
Confidence 3789999999999999999988865444
No 147
>1m5h_A Formylmethanofuran--tetrahydromethanopterin formyltransferase; alpha/beta sandwich; 2.00A {Archaeoglobus fulgidus} SCOP: d.58.33.1 d.58.33.1
Probab=26.83 E-value=85 Score=22.45 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=23.5
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHccCC
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSDKG 30 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~~g 30 (91)
=+.+||.|..+|-+|++..++-+-+-.|
T Consensus 246 EIVIdGl~~~aV~~AmraGi~Aa~~~~G 273 (297)
T 1m5h_A 246 EIVINGLNADAIKEATRVGILAATKIPG 273 (297)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHTTSTT
T ss_pred EEEEcCCCHHHHHHHHHHHHHHHhccCC
Confidence 3789999999999999999988865444
No 148
>1ftr_A FTR, formylmethanofuran\:tetrahydromethanopterin formyltransferase; methanogenesis, archae, acyltransferase, hyperthermophilic, halophilic; 1.70A {Methanopyrus kandleri} SCOP: d.58.33.1 d.58.33.1 PDB: 2fhj_A* 2fhk_A*
Probab=26.55 E-value=85 Score=22.43 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=23.5
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHccCC
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRSDKG 30 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~~~g 30 (91)
=+.+||.|..+|-+|++..++-+-+-.|
T Consensus 245 EIVIdGl~~~aV~~AMraGi~Aa~~~~G 272 (296)
T 1ftr_A 245 EIVINGLNEEAVKEAMRVGIEAACQQPG 272 (296)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHTTSTT
T ss_pred EEEEcCCCHHHHHHHHHHHHHHHhccCC
Confidence 3789999999999999999988865444
No 149
>1wv8_A TT1413, hypothetical protein TTHA1013; structural genomics, unknown function, novel F riken structural genomics/proteomics initiative, RSGI; 2.20A {Thermus thermophilus} SCOP: d.304.1.1
Probab=26.48 E-value=88 Score=17.67 Aligned_cols=41 Identities=10% Similarity=0.075 Sum_probs=32.2
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHcc-----CCCEEEEEeeecC
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSD-----KGPILLETATYRY 41 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~-----~gP~lie~~tyR~ 41 (91)
+||.+..|.-+.++.+-++.++.-+.+- ++|+=+|+.+.|.
T Consensus 24 i~Glvtea~Tleel~~~i~~~i~~lLe~n~~~~~~~i~~~~~~~~~ 69 (73)
T 1wv8_A 24 VPGLATEAATLEELLAKLAVMVPELLEENGVALELPVELRLEATRP 69 (73)
T ss_dssp STTCCCEESSHHHHHHHHHHHHHHHHHHSCCCCCSSCEEEEECCCC
T ss_pred CCceeeecCCHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEEEEE
Confidence 5778888999999999999999888773 3567777766553
No 150
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=25.90 E-value=31 Score=23.52 Aligned_cols=21 Identities=19% Similarity=0.061 Sum_probs=17.1
Q ss_pred HHHHHHHHHcCCCCHHHHhhh
Q psy11439 70 SSLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 70 ~~~~~~L~~~g~~~~~e~~~~ 90 (91)
..++.-|+++|+++++.+++.
T Consensus 14 ~ALe~lL~eKGli~~~~id~~ 34 (209)
T 4fm4_A 14 DALFVLTKELGLVTDQTVPDY 34 (209)
T ss_dssp HHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHH
Confidence 457888999999999888754
No 151
>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}
Probab=25.88 E-value=55 Score=20.10 Aligned_cols=16 Identities=13% Similarity=0.034 Sum_probs=11.1
Q ss_pred HHHHHccCCCEEEEEe
Q psy11439 22 VNHCRSDKGPILLETA 37 (91)
Q Consensus 22 ~~~~R~~~gP~lie~~ 37 (91)
.+.+...++|++++|.
T Consensus 95 ~~~l~~~~~pVlvHC~ 110 (156)
T 2f46_A 95 RQLIGQAEYPVLAYCR 110 (156)
T ss_dssp HHHHHTSCSSEEEECS
T ss_pred HHHHHhCCCCEEEECC
Confidence 3334445889999994
No 152
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=25.71 E-value=1.1e+02 Score=21.36 Aligned_cols=30 Identities=10% Similarity=0.007 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q psy11439 11 ILAVREAARFAVNHCRSDKGPILLETATYR 40 (91)
Q Consensus 11 ~~~v~~a~~~a~~~~R~~~gP~lie~~tyR 40 (91)
-.+.++.+..+++.|++.+-|+|+|+..+.
T Consensus 137 ~~~~~~~i~~v~~~~~~~G~p~lv~~~~~g 166 (304)
T 1to3_A 137 AQQRLNMVKEFNELCHSNGLLSIIEPVVRP 166 (304)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEECCC
Confidence 688899999999999999999999976544
No 153
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=25.68 E-value=49 Score=19.96 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=28.2
Q ss_pred EeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee-ecCC
Q psy11439 5 EVDGMDILAVREAARFAVNHCRSDKGPILLETAT-YRYS 42 (91)
Q Consensus 5 ~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~t-yR~~ 42 (91)
.+.| |..+|.++++++.+.+-.|..-+..-++. +|..
T Consensus 57 ~IEG-e~devm~vvk~~~e~~~~g~~RV~t~iKId~R~d 94 (106)
T 1vk8_A 57 TVEG-EFEEIMDRVKELARYLEQFAKRFVLQLDIDYKAG 94 (106)
T ss_dssp EEEE-CHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEETT
T ss_pred EEEc-CHHHHHHHHHHHHHHHHcCCCEEEEEEEEEecCC
Confidence 4567 59999999999999998666666677765 6644
No 154
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Probab=25.63 E-value=1.1e+02 Score=18.15 Aligned_cols=26 Identities=12% Similarity=-0.018 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHH-ccCCCEEEEEe
Q psy11439 12 LAVREAARFAVNHCR-SDKGPILLETA 37 (91)
Q Consensus 12 ~~v~~a~~~a~~~~R-~~~gP~lie~~ 37 (91)
..+........+... ..++|++|+|.
T Consensus 78 ~~~~~~~~~i~~~~~~~~~~~vlVHC~ 104 (159)
T 1rxd_A 78 QIVDDWLSLVKIKFREEPGCCIAVHCV 104 (159)
T ss_dssp HHHHHHHHHHHHHHHHSTTCEEEEECS
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 333333333333332 34689999993
No 155
>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual specificity phosphatase, DUSP13, testis and skeletal muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A
Probab=24.95 E-value=46 Score=21.53 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=11.3
Q ss_pred HHHHHc-cCCCEEEEEe
Q psy11439 22 VNHCRS-DKGPILLETA 37 (91)
Q Consensus 22 ~~~~R~-~~gP~lie~~ 37 (91)
++.+.+ .+||+||+|.
T Consensus 123 I~~~l~~~~~~VLVHC~ 139 (205)
T 2pq5_A 123 IRAALSVPQGRVLVHCA 139 (205)
T ss_dssp HHHHHTSTTCCEEEECS
T ss_pred HHHHHhcCCCeEEEECC
Confidence 444444 6889999994
No 156
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=24.85 E-value=1.5e+02 Score=19.46 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=36.3
Q ss_pred ceEEeeCCCHHHHH--------HHHHHHHHHHHccC-CCEEEEEeeecCCCCCCCCCCCCCCCHHHHHHHHh
Q psy11439 2 ENKEVDGMDILAVR--------EAARFAVNHCRSDK-GPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQ 64 (91)
Q Consensus 2 ~~~~vDG~D~~~v~--------~a~~~a~~~~R~~~-gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~ 64 (91)
+.+.|||.||.-.+ ..+..|+++.++-+ .++.+=+-.+|..+ ...|. .+.+.+.+++|.+
T Consensus 25 R~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yf~~rGh~~v~VfvP~~r~~~-~~~~~--~~~d~~~L~~L~~ 93 (185)
T 3v32_B 25 RPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGHTDITVFVPSWRKEQ-PRPDV--PITDQHILRELEK 93 (185)
T ss_dssp CCEEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHHTTCCCEEEEEEGGGGSC-CCTTS--CEECTHHHHHHHH
T ss_pred CeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHHcCCCceEEEechHhhhc-ccccC--CCCCHHHHHHHHH
Confidence 34678998886655 46788888877644 45655445566432 22232 2556677777653
No 157
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=24.62 E-value=52 Score=21.12 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=20.0
Q ss_pred HHHHHHHHccCCCEEEEEeeecCCCCC
Q psy11439 19 RFAVNHCRSDKGPILLETATYRYSGHS 45 (91)
Q Consensus 19 ~~a~~~~R~~~gP~lie~~tyR~~gHs 45 (91)
.++++.+++.++|+||.+- +-+||+.
T Consensus 29 ~ea~~~A~~~~KpVlvdF~-A~WC~~C 54 (173)
T 3ira_A 29 EEAFEKARKENKPVFLSIG-YSTCHWC 54 (173)
T ss_dssp HHHHHHHHHHTCCEEEEEE-CTTCHHH
T ss_pred HHHHHHHHHhCCCEEEecc-cchhHhh
Confidence 4677788888999999984 5677654
No 158
>3s3e_A Tyrosine-protein phosphatase 10D; differentiation, neurogenesis, signal transduction, developm protein, hydrolase; 2.40A {Drosophila melanogaster} PDB: 3s3f_A 3s3h_A* 3s3k_A*
Probab=23.95 E-value=68 Score=22.41 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEE
Q psy11439 10 DILAVREAARFAVNHCRSDKGPILLET 36 (91)
Q Consensus 10 D~~~v~~a~~~a~~~~R~~~gP~lie~ 36 (91)
++..+..-++...+......||++|+|
T Consensus 216 ~~~~ll~fi~~v~~~~~~~~~PIvVHC 242 (307)
T 3s3e_A 216 PPQTLVRFVRAFRDRIGAEQRPIVVHC 242 (307)
T ss_dssp STHHHHHHHHHHHHHHCSCCSCEEEEC
T ss_pred ChHHHHHHHHHHHHHhcCCCCCEEEEc
Confidence 344555555555555566789999998
No 159
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=23.95 E-value=26 Score=19.28 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=13.6
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLET 36 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~ 36 (91)
+.|||.++... ...+++..++..+.++-|.+
T Consensus 56 ~~ing~~v~~~--~~~~~~~~~~~~~~~v~l~v 86 (90)
T 1qav_A 56 LSVNGEDLSSA--THDEAVQALKKTGKEVVLEV 86 (90)
T ss_dssp EEETTEECTTC--CHHHHHHHHHTCCSEEEEEE
T ss_pred EEECCEECCCC--CHHHHHHHHHhCCCeEEEEE
Confidence 45666655432 12234444444444444433
No 160
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A*
Probab=23.61 E-value=82 Score=20.22 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=12.1
Q ss_pred HHHHHHHccCCCEEEEEe
Q psy11439 20 FAVNHCRSDKGPILLETA 37 (91)
Q Consensus 20 ~a~~~~R~~~gP~lie~~ 37 (91)
..++.+...++|++|+|.
T Consensus 124 ~~i~~~~~~~~~VlVHC~ 141 (212)
T 1fpz_A 124 EELTTCLKNYRKTLIHSY 141 (212)
T ss_dssp HHHHHHHHTTCCEEEECS
T ss_pred HHHHHHHhCCCCEEEECC
Confidence 334444446889999994
No 161
>3mtk_A Diguanylate cyclase/phosphodiesterase; structural genomics, PSI-2, protein structure initiative; 2.24A {Caldicellulosiruptor saccharolyticus}
Probab=23.51 E-value=77 Score=19.29 Aligned_cols=25 Identities=4% Similarity=0.004 Sum_probs=19.1
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCCC
Q psy11439 7 DGMDILAVREAARFAVNHCRSDKGP 31 (91)
Q Consensus 7 DG~D~~~v~~a~~~a~~~~R~~~gP 31 (91)
+|.++.+++..+..|+..++..++-
T Consensus 133 ~~~~~~~ll~~A~~Al~~ak~~g~~ 157 (178)
T 3mtk_A 133 SNEAAANLMRRCDLALIKAKEEGLN 157 (178)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 6789999999999999999885443
No 162
>2yzt_A Putative uncharacterized protein TTHA1756; uncharacterized conserved protein, structural genomics, UNKN function, NPPSFA; 1.80A {Thermus thermophilus}
Probab=23.15 E-value=82 Score=16.81 Aligned_cols=27 Identities=4% Similarity=0.030 Sum_probs=23.5
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHcc
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRSD 28 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~~ 28 (91)
+|+ ...|.++.+...-+++|++-.-..
T Consensus 24 lpg-~t~G~T~eEa~~~~~eAi~~~le~ 50 (67)
T 2yzt_A 24 LHA-HTQAQSFEELLRRLQEAIAVSLEE 50 (67)
T ss_dssp GTE-EEEESSHHHHHHHHHHHHHHHTTC
T ss_pred CCC-ceeeCCHHHHHHHHHHHHHHHHhc
Confidence 477 889999999999999999887665
No 163
>3kg0_A Snoab; polyketide, anthracycline, oxygenase, cofactor-independent, oxidoreductase; 1.70A {Streptomyces nogalater} PDB: 3kg1_A 3kng_A
Probab=23.10 E-value=1.3e+02 Score=18.08 Aligned_cols=65 Identities=8% Similarity=0.091 Sum_probs=44.9
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCC-----CCCCHHHHHHHHhCCChHHHHHHHH
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGT-----SYRTRDEIQEVRQTRDPISSLKDKI 76 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~-----~Yr~~~e~~~~~~~~DPi~~~~~~L 76 (91)
+.|.-. ..++.+++..+...+++..| +|....+|-. .++.. .|+|.+.++.|.+ -+-...+.+.|
T Consensus 30 ~~V~pg-~~~f~~~~~~~~~~~~~~pG--fi~~~L~r~~----~~p~~yv~~~~W~s~ea~~a~~~-S~~f~a~~~~l 99 (128)
T 3kg0_A 30 FTVHGA-PAEFESVFARTAAFFARQPG--FVRHTLLRER----DKDNSYVNIAVWTDHDAFRRALA-QPGFLPHATAL 99 (128)
T ss_dssp EEECSC-HHHHHHHHHHHHHHHHTSTT--EEEEEEEECT----TCSSEEEEEEEESSHHHHHHHHH-CGGGHHHHHHH
T ss_pred EEeCCC-HHHHHHHHHHHHHHHhcCCC--ccEEEEEEcC----CCCCEEEEEEEECCHHHHHHHHc-CHHHHHHHHhh
Confidence 455555 78888889999988886555 8888888844 22222 3789999999984 45444454444
No 164
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=22.98 E-value=85 Score=17.20 Aligned_cols=21 Identities=19% Similarity=0.523 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCCCHHHHhh
Q psy11439 69 ISSLKDKILNASLVTPEELKR 89 (91)
Q Consensus 69 i~~~~~~L~~~g~~~~~e~~~ 89 (91)
+..|+..|.++|..+.++|++
T Consensus 25 ~me~rD~LEeqG~~~~~eI~~ 45 (61)
T 2e62_A 25 LIEYRETLEEQGMKNPEEIER 45 (61)
T ss_dssp HHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHH
Confidence 445899999999888777764
No 165
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=22.96 E-value=99 Score=19.48 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=21.6
Q ss_pred ceEEeeCC------CHHHHHHHHHHHHHHHHccC
Q psy11439 2 ENKEVDGM------DILAVREAARFAVNHCRSDK 29 (91)
Q Consensus 2 ~~~~vDG~------D~~~v~~a~~~a~~~~R~~~ 29 (91)
|++.|||. ++....+++..+++.+|+.+
T Consensus 156 Pt~vvng~~~~~~~~~e~l~~~i~~ll~k~r~~~ 189 (193)
T 3hz8_A 156 PTVIVGGKYKVEFADWESGMNTIDLLADKVREEQ 189 (193)
T ss_dssp SEEEETTTEEECCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCEEEecCCCHHHHHHHHHHHHHHHHHhh
Confidence 67777754 77888888899998888753
No 166
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=22.91 E-value=2.1e+02 Score=20.34 Aligned_cols=60 Identities=12% Similarity=0.071 Sum_probs=43.4
Q ss_pred ceEEeeC--CCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCC----CCCCCCCCHHHHHHHH
Q psy11439 2 ENKEVDG--MDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS----DPGTSYRTRDEIQEVR 63 (91)
Q Consensus 2 ~~~~vDG--~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~----D~~~~Yr~~~e~~~~~ 63 (91)
.++=+|| .++++=.+.+++.+++|+.-+ +-||+..=++.|.... ++...|.+|+|...+-
T Consensus 99 tSVMiDgS~~p~eeNi~~Tk~vv~~ah~~g--vsVEaELG~igG~Ed~~~~~~~~~~yT~Peea~~Fv 164 (307)
T 3n9r_A 99 TSVMIDASHHAFEENLELTSKVVKMAHNAG--VSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFV 164 (307)
T ss_dssp SEEEECCTTSCHHHHHHHHHHHHHHHHHTT--CEEEEEESCCCCC----------CCSCCHHHHHHHH
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHHHHHcC--CeEEEEeeeeccccCCcccccccccCCCHHHHHHHH
Confidence 4566787 578899999999999999854 6889888888775321 1123599999987653
No 167
>1iuj_A Hypothetical protein TT1380; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.60A {Thermus thermophilus} SCOP: d.58.4.5
Probab=22.59 E-value=98 Score=17.12 Aligned_cols=61 Identities=10% Similarity=0.038 Sum_probs=38.2
Q ss_pred eeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCCCCCC-----CCCCHHHHHHHHhCCChHHHHH
Q psy11439 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGT-----SYRTRDEIQEVRQTRDPISSLK 73 (91)
Q Consensus 6 vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~D~~~-----~Yr~~~e~~~~~~~~DPi~~~~ 73 (91)
|.-....++.+++...+..+|+. |-+|....+|-.. |+.. .|.|.+.++.|.. .+....+.
T Consensus 10 v~~g~~~~f~~~~~~~~~~~~~~--pG~l~~~l~~~~~----~~~~~~~~~~W~s~~a~~a~~~-s~~~~~~~ 75 (106)
T 1iuj_A 10 VRPEYAEQFEEAFRQRARLVDRM--PGFIRNLVLRPKN----PGDPYVVMTLWESEEAFRAWTE-SPAFKEGH 75 (106)
T ss_dssp BCGGGHHHHHHHHHHHGGGGTTS--TTEEEEEEEEESS----TTSCEEEEEEESCHHHHHHHHT-SHHHHHHT
T ss_pred eCcchHHHHHHHHHHHHHHhccC--CCceEEEEEecCC----CCCeEEEEEEECCHHHHHHHhc-CHHHHHHH
Confidence 33334566777777777777665 5588888777542 2222 3889999999973 33334443
No 168
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*
Probab=22.15 E-value=73 Score=19.65 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=22.4
Q ss_pred eCCCHHHHHHHHHHHHHHHHccCCCEE
Q psy11439 7 DGMDILAVREAARFAVNHCRSDKGPIL 33 (91)
Q Consensus 7 DG~D~~~v~~a~~~a~~~~R~~~gP~l 33 (91)
+|.++..++..+..|+..++..++..+
T Consensus 167 ~~~~~~~ll~~A~~Al~~ak~~g~~~~ 193 (206)
T 3i5c_A 167 GGQTFRVLIEMADQALYQAKNNGRNQV 193 (206)
T ss_dssp TTCCTHHHHHHHHHHHHHHHHTTSSSE
T ss_pred CCcCHHHHHHHHHHHHHHHHHcCCCeE
Confidence 468889999999999999998665544
No 169
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=22.09 E-value=1.9e+02 Score=19.62 Aligned_cols=30 Identities=13% Similarity=-0.066 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 8 GMDILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 8 G~D~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
+.++.+..+.+.++++++++.+.++-.++.
T Consensus 112 ~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~ 141 (295)
T 1ydn_A 112 NCTIAESIERLSPVIGAAINDGLAIRGYVS 141 (295)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 568899999999999999998777654443
No 170
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=22.03 E-value=1.6e+02 Score=18.89 Aligned_cols=31 Identities=23% Similarity=0.181 Sum_probs=23.4
Q ss_pred EEeeC--CCHHHHHHHHHHHHHHHHccCCCEEE
Q psy11439 4 KEVDG--MDILAVREAARFAVNHCRSDKGPILL 34 (91)
Q Consensus 4 ~~vDG--~D~~~v~~a~~~a~~~~R~~~gP~li 34 (91)
+-+|| .|-..+...+.+|++.+++.+.+++|
T Consensus 11 ~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~l 43 (266)
T 3pdw_A 11 IDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLF 43 (266)
T ss_dssp EECSSSTTCHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred EeCcCceEeCCEeCccHHHHHHHHHHCCCeEEE
Confidence 34566 34466777889999999998888776
No 171
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=21.87 E-value=1.2e+02 Score=20.07 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=22.2
Q ss_pred HHHHHHhCCChHH---HHHHHHHHcCCCCHHHHhhh
Q psy11439 58 EIQEVRQTRDPIS---SLKDKILNASLVTPEELKRE 90 (91)
Q Consensus 58 e~~~~~~~~DPi~---~~~~~L~~~g~~~~~e~~~~ 90 (91)
+++... ..||-. .++..|.+.| +|+.++...
T Consensus 19 ~ie~~~-~e~p~~l~~~Ik~~l~~~g-itQ~~lA~~ 52 (194)
T 1ic8_A 19 VVETLL-QEDPWRVAKMVKSYLQQHN-IPQREVVDT 52 (194)
T ss_dssp HHHHHT-TSCHHHHHHHHHHHHHHTT-CCHHHHHHH
T ss_pred HHHHHH-ccCHHHHHHHHHHHHHHcC-CCHHHHHHH
Confidence 566665 468876 5888888887 688877653
No 172
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=21.67 E-value=85 Score=23.72 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=21.2
Q ss_pred EEeeCCCHHHHHHHHHHHHHHHHccCCCEEEEEe
Q psy11439 4 KEVDGMDILAVREAARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~R~~~gP~lie~~ 37 (91)
..|+-++++ .++.+++.+.+.+.|+||++.
T Consensus 24 ~av~~~n~e----~i~Ail~aAee~~sPVIIe~t 53 (450)
T 3txv_A 24 PSICSAHPL----VIEAAMLRAHREKAPVLIEAT 53 (450)
T ss_dssp EEECCCCHH----HHHHHHHHHHHSCSCEEEEEE
T ss_pred EEeCcCCHH----HHHHHHHHHHHhCCCEEEEcC
Confidence 456666665 445566666778899999985
No 173
>4i16_A Caspase recruitment domain-containing protein 11; CBM complex, helix bundle, scaffold protein, BCL10 and MALT1 phosphorylation, signaling protein; 1.75A {Mus musculus}
Probab=21.43 E-value=85 Score=18.51 Aligned_cols=19 Identities=5% Similarity=0.146 Sum_probs=16.1
Q ss_pred HHHHHHHcCCCCHHHHhhh
Q psy11439 72 LKDKILNASLVTPEELKRE 90 (91)
Q Consensus 72 ~~~~L~~~g~~~~~e~~~~ 90 (91)
+-.+|.+.|++|+++.+++
T Consensus 25 l~~yL~q~~VLt~~deEeI 43 (93)
T 4i16_A 25 LTPYLRQCKVIDEQDEDEV 43 (93)
T ss_dssp HHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHH
Confidence 6788999999999887764
No 174
>2d28_C XPSE, type II secretion ATPase XPSE; alpha-beta sandwich, protein transport; 2.00A {Xanthomonas campestris} SCOP: d.52.10.1 PDB: 2d27_A
Probab=20.96 E-value=53 Score=19.78 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=15.2
Q ss_pred HHHHHHHcCCCCHHHHhhh
Q psy11439 72 LKDKILNASLVTPEELKRE 90 (91)
Q Consensus 72 ~~~~L~~~g~~~~~e~~~~ 90 (91)
+.+.|++.|++|++++.+.
T Consensus 39 l~~~L~~~g~i~e~~l~~~ 57 (149)
T 2d28_C 39 LLALLGRLGLVSERDHAET 57 (149)
T ss_dssp HHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHH
Confidence 5677899999999887653
No 175
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=20.80 E-value=91 Score=19.15 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11439 11 ILAVREAARFAVNHCR 26 (91)
Q Consensus 11 ~~~v~~a~~~a~~~~R 26 (91)
+.++.+++..+++..|
T Consensus 172 ~~~l~~~i~~~~~~~~ 187 (193)
T 2rem_A 172 FEDTLRITDYLVSRER 187 (193)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 176
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=20.79 E-value=1.5e+02 Score=17.83 Aligned_cols=37 Identities=8% Similarity=0.212 Sum_probs=30.8
Q ss_pred eEEeeCCCHHHHHHHHHHHHHHHHc--cCCCEEEEEeee
Q psy11439 3 NKEVDGMDILAVREAARFAVNHCRS--DKGPILLETATY 39 (91)
Q Consensus 3 ~~~vDG~D~~~v~~a~~~a~~~~R~--~~gP~lie~~ty 39 (91)
.+++...|+.++.+...+-++.+-. .+.|++|.+...
T Consensus 19 vl~l~~~d~~~l~~~L~~ki~~aP~FF~~aPVVlDl~~l 57 (120)
T 3ghf_A 19 VVHLHEAEPEVIRQALEDKIAQAPAFLKHAPVVINVSGL 57 (120)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHSHHHHTTCEEEEEEEEC
T ss_pred EEEeCCCCHHHHHHHHHHHHHhChHhhCCCcEEEEcccc
Confidence 5677889999999999999988876 466999998643
No 177
>3kkf_A Putative antibiotic biosynthesis monooxygenase; structural genomics, joint center for structural genomics, JCSG; HET: MSE P6G; 1.30A {Bacteroides thetaiotaomicron}
Probab=20.76 E-value=1.3e+02 Score=16.99 Aligned_cols=66 Identities=11% Similarity=0.083 Sum_probs=44.0
Q ss_pred EEeeCCCHHHHHHHHHHHHHHH-HccCCCEEEEEeeecCCCCCCCCCCC-----CCCCHHHHHHHHhCCChHHHHHHHH
Q psy11439 4 KEVDGMDILAVREAARFAVNHC-RSDKGPILLETATYRYSGHSMSDPGT-----SYRTRDEIQEVRQTRDPISSLKDKI 76 (91)
Q Consensus 4 ~~vDG~D~~~v~~a~~~a~~~~-R~~~gP~lie~~tyR~~gHs~~D~~~-----~Yr~~~e~~~~~~~~DPi~~~~~~L 76 (91)
++|.-....++.+++...++.. |+..| .|....+|- ..|+.. .|++.+.++.+. +.+-...|.+.+
T Consensus 12 ~~vkpg~~~~f~~~l~~~~~~s~r~EpG--cl~y~~~~~----~~~p~~~~~~E~w~d~~a~~~H~-~s~~~~~~~~~~ 83 (105)
T 3kkf_A 12 IIIDPERLEEYNAYLKEEIEVSMRLEPG--VLVLYAVAE----KERPNHVTILEIYADEAAYKSHI-ATPHFKKYKEGT 83 (105)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHHHHCTT--EEEEEEEEC----SSCTTEEEEEEEESSHHHHHHHH-TSHHHHHHHHHH
T ss_pred EEECcCcHHHHHHHHHHHHHHHHhCCCC--cEEEEEEEe----CCCCCEEEEEEEECCHHHHHHHh-cCHHHHHHHHHH
Confidence 4455556788888999888775 77666 555555553 233333 489999999887 456666666654
No 178
>3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for structural genomics of infec diseases, csgid, TIM beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni} SCOP: c.1.10.2
Probab=20.67 E-value=2.5e+02 Score=20.37 Aligned_cols=59 Identities=10% Similarity=0.069 Sum_probs=42.7
Q ss_pred ceEEeeC--CCHHHHHHHHHHHHHHHHccCCCEEEEEeeecCCCCCCC------CCCCCCCCHHHHHHH
Q psy11439 2 ENKEVDG--MDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMS------DPGTSYRTRDEIQEV 62 (91)
Q Consensus 2 ~~~~vDG--~D~~~v~~a~~~a~~~~R~~~gP~lie~~tyR~~gHs~~------D~~~~Yr~~~e~~~~ 62 (91)
.++=+|| .++++=.+.+++.+++|+.-+ +-||+..=+..|.... +....|.+|+|...+
T Consensus 137 tSVMiDgS~lp~eENI~~Tk~vv~~ah~~g--vsVEaELG~igG~Edgv~~~~~~~~~~yT~Peea~~F 203 (357)
T 3qm3_A 137 SSHMLDLSEESLEENLSTCEVYLQKLDALG--VALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVALA 203 (357)
T ss_dssp SEEECCCTTSCHHHHHHHHHHHHHHHHHHT--CEEEEECCCCCC-----CCSSTTCTTTSCCHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHHcC--CeEEEEeeeeccccCCccccccccccccCCHHHHHHH
Confidence 3566777 478899999999999999865 6788887777765211 223459999998665
No 179
>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel beta sheet with flanking helices, structural genomics, PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5 PDB: 2oz5_A*
Probab=20.28 E-value=88 Score=21.67 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=14.6
Q ss_pred HHHHHHHHHHccCCCEEEEEe
Q psy11439 17 AARFAVNHCRSDKGPILLETA 37 (91)
Q Consensus 17 a~~~a~~~~R~~~gP~lie~~ 37 (91)
++...++...+ ++|+|++|.
T Consensus 162 ~~~~~l~~l~~-~~pvl~HC~ 181 (296)
T 1ywf_A 162 ALHRVVTLLAA-GRPVLTHCF 181 (296)
T ss_dssp HHHHHHHHHHT-TCCEEEECS
T ss_pred HHHHHHHHhcc-CCCEEEECC
Confidence 45556666655 899999994
No 180
>2dsy_A Hypothetical protein TTHA0281; structural genomics, thermus thermophilus HB8, NPPSFA; HET: NHE; 1.90A {Thermus thermophilus} SCOP: d.304.1.2
Probab=20.14 E-value=86 Score=17.73 Aligned_cols=27 Identities=7% Similarity=0.021 Sum_probs=21.9
Q ss_pred CceEEeeCCCHHHHHHHHHHHHHHHHc
Q psy11439 1 MENKEVDGMDILAVREAARFAVNHCRS 27 (91)
Q Consensus 1 i~~~~vDG~D~~~v~~a~~~a~~~~R~ 27 (91)
+|+....|.++.+...-+++|++..-.
T Consensus 36 lpgc~t~G~T~eEA~~~a~eAl~~~le 62 (87)
T 2dsy_A 36 LPGVWATGKSLKECEANLQAALEDWLL 62 (87)
T ss_dssp STTCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCeeEeeCCHHHHHHHHHHHHHHHHH
Confidence 467778899999999999998876543
Done!