RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11439
(91 letters)
>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component. This family uses
thiamine pyrophosphate as a cofactor. This family
includes pyruvate dehydrogenase, 2-oxoglutarate
dehydrogenase and 2-oxoisovalerate dehydrogenase.
Length = 303
Score = 132 bits (335), Expect = 8e-40
Identities = 44/84 (52%), Positives = 60/84 (71%)
Query: 5 EVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQ 64
VDGMD LAV +A +FA R+ GP L+E TYRY GHSMSD ++YRTR+E++EVR+
Sbjct: 194 RVDGMDPLAVYQAVKFAAERARTGNGPTLIELVTYRYGGHSMSDDPSTYRTREEVEEVRK 253
Query: 65 TRDPISSLKDKILNASLVTPEELK 88
+DPI LK +++ +V+ EELK
Sbjct: 254 KKDPIKRLKKHLVSRGVVSEEELK 277
>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 315
Score = 129 bits (326), Expect = 2e-38
Identities = 48/88 (54%), Positives = 63/88 (71%), Gaps = 2/88 (2%)
Query: 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQ 60
+ + VDGMD+LAVREAA+ AV RS KGPILLE TYR+ GHSMSDP YR+++E++
Sbjct: 196 IPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHSMSDPA-KYRSKEEVE 254
Query: 61 EVRQTRDPISSLKDKILNASLVTPEELK 88
E R RDPI LK +++ + + EELK
Sbjct: 255 EWR-KRDPIEKLKARLIEQGIASEEELK 281
>gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit
alpha.
Length = 362
Score = 127 bits (322), Expect = 2e-37
Identities = 50/84 (59%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDGMD+LAV++A +FA H S GPI+LE TYRY GHSMSDPG++YRTRDEI VRQ
Sbjct: 227 VDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQE 285
Query: 66 RDPISSLKDKILNASLVTPEELKR 89
RDPI ++ +L L T ELK
Sbjct: 286 RDPIERVRKLLLAHELATEAELKD 309
>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family,
E1 of PDC_ADC_BCADC subfamily, TPP-binding module;
composed of proteins similar to the E1 components of the
human pyruvate dehydrogenase complex (PDC), the acetoin
dehydrogenase complex (ADC) and the branched chain
alpha-keto acid dehydrogenase/2-oxoisovalerate
dehydrogenase complex (BCADC). PDC catalyzes the
irreversible oxidative decarboxylation of pyruvate to
produce acetyl-CoA in the bridging step between
glycolysis and the citric acid cycle. ADC participates
in the breakdown of acetoin while BCADC participates in
the breakdown of branched chain amino acids. BCADC
catalyzes the oxidative decarboxylation of
4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and
3-methyl-2-oxobutanoate (branched chain 2-oxo acids
derived from the transamination of leucine, valine and
isoleucine).
Length = 293
Score = 120 bits (303), Expect = 4e-35
Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQ 60
+ VDG D+LAV EAA+ AV R+ GP L+E TYR GHS SD + YRT++E++
Sbjct: 190 IPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPSRYRTKEEVE 249
Query: 61 EVRQTRDPISSLKDKILNASLVTPEELK 88
E + RDPI L+ ++ A ++T EEL
Sbjct: 250 E-WKKRDPILRLRKYLIEAGILTEEELA 276
>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, eukaryotic type, alpha
subunit [Energy production and conversion].
Length = 358
Score = 113 bits (286), Expect = 4e-32
Identities = 39/84 (46%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Query: 5 EVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQ 64
VDG D+LAV EAA+ AV R+ +GP L+E TYRY GHS SD + YR+++E++E +
Sbjct: 227 RVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWK- 285
Query: 65 TRDPISSLKDKILNASLVTPEELK 88
RDPI L+ ++ A +++ EEL+
Sbjct: 286 KRDPIVRLRKYLIEAGILSEEELE 309
>gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit;
Reviewed.
Length = 341
Score = 88.0 bits (218), Expect = 2e-22
Identities = 40/83 (48%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 5 EVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQ 64
EVDGMD+LAVRE A+ AV R GP L+E TYR+ GHS++DP R++ E +E
Sbjct: 225 EVDGMDVLAVREVAKEAVERARQGDGPTLIEALTYRFRGHSLADP-DELRSKQE-KEAWV 282
Query: 65 TRDPISSLKDKILNASLVTPEEL 87
RDPI LK I++ L + +EL
Sbjct: 283 ARDPIKKLKSYIIDNELASQKEL 305
>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 341
Score = 82.6 bits (205), Expect = 2e-20
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQT 65
VDG D+LAV + AV RS GP L+E TYR H+ +D T YRT++E +E R+
Sbjct: 213 VDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWRK- 271
Query: 66 RDPISSLK 73
+DPI L+
Sbjct: 272 KDPILRLR 279
>gnl|CDD|215213 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring).
Length = 433
Score = 78.1 bits (192), Expect = 1e-18
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 12/93 (12%)
Query: 1 MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQ 60
M VDGMD+L VRE A+ A+ R +GP L+E TYR+ GHS++DP DE++
Sbjct: 287 MPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP-------DELR 339
Query: 61 EVRQ-----TRDPISSLKDKILNASLVTPEELK 88
+ + RDPI++LK ++ L T ELK
Sbjct: 340 DPAEKAHYAARDPIAALKKYLIENGLATEAELK 372
>gnl|CDD|227482 COG5153, CVT17, Putative lipase essential for disintegration of
autophagic bodies inside the vacuole [Intracellular
trafficking and secretion / Lipid metabolism].
Length = 425
Score = 27.6 bits (61), Expect = 0.95
Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 16 EAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPISSLKDK 75
E ++ D P+LL+T Y G SYR + V + S
Sbjct: 63 EVTPEVISAATEDMLPLLLQTPIYGTYGELRRVQLASYR----FKSVLEIYSERLSTAQM 118
Query: 76 ILNASLVTPEELKRE 90
++V P R
Sbjct: 119 WQEYTIVFPNITDRV 133
>gnl|CDD|223641 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase
(E1) component, and related enzymes [Energy production
and conversion].
Length = 906
Score = 27.6 bits (62), Expect = 0.96
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHS-MSDPGTS----YRTRDEIQ 60
V+ D AV A A+ + K ++++ YR GH+ +P + Y Q
Sbjct: 398 VNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPSVTQPLMY------Q 451
Query: 61 EVRQTRDPISSLKDKILNASLVTPEELKR 89
++++ DK++ +++ EE
Sbjct: 452 KIKKHPTVRKLYADKLIAEGVISEEEADE 480
>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component.
The 2-oxoglutarate dehydrogenase complex consists of
this thiamine pyrophosphate-binding subunit (E1),
dihydrolipoamide succinyltransferase (E2), and lipoamide
dehydrogenase (E3). The E1 ortholog from Corynebacterium
glutamicum is unusual in having an N-terminal extension
that resembles the dihydrolipoamide succinyltransferase
(E2) component of 2-oxoglutarate dehydrogenase [Energy
metabolism, TCA cycle].
Length = 929
Score = 26.0 bits (57), Expect = 3.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 6 VDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSD 48
V+ D AV A R AV + + K + ++ YR GH+ +D
Sbjct: 416 VNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEAD 458
>gnl|CDD|185341 PRK15444, pduC, propanediol dehydratase large subunit; Provisional.
Length = 554
Score = 25.8 bits (57), Expect = 3.2
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 49 PGTSYRT----RDEIQEVRQTRDPIS 70
PGT YR +EI+ + Q DP
Sbjct: 527 PGTGYRLSGERWEEIKNIPQALDPEE 552
>gnl|CDD|201894 pfam01630, Glyco_hydro_56, Hyaluronidase.
Length = 339
Score = 25.8 bits (57), Expect = 3.6
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 14 VREAARFAVNHCRSDKGPILLETATYRYSGHSMSD 48
V+EA R + S P+ RY + +D
Sbjct: 247 VKEAIRVSKVGDASHPLPVF---VYIRYVFYDRTD 278
>gnl|CDD|237088 PRK12393, PRK12393, amidohydrolase; Provisional.
Length = 457
Score = 25.0 bits (55), Expect = 7.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 2 ENKEVDGMDILAVREAARFAV 22
EN + G+D+ +R AR AV
Sbjct: 429 ENGAIPGLDLAELRHDARAAV 449
>gnl|CDD|222959 PHA02999, PHA02999, Hypothetical protein; Provisional.
Length = 382
Score = 24.7 bits (54), Expect = 7.8
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 32 ILLETATYRYSGHSMSDPGTSYRTRDEIQEVRQTRDPIS 70
+ L ++M Y+ + +I++VR+ D I
Sbjct: 85 VNLTKKQISSEENTMKMDKKKYKLKKKIKKVREINDTIR 123
>gnl|CDD|132348 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, F1 subunit beta.
A small number of taxonomically diverse prokaryotic
species have what appears to be a second ATP synthase,
in addition to the normal F1F0 ATPase in bacteria and
A1A0 ATPase in archaea. These enzymes use ion gradients
to synthesize ATP, and in principle may run in either
direction. This model represents the F1 beta subunit of
this apparent second ATP synthase.
Length = 449
Score = 24.8 bits (54), Expect = 9.3
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 42 SGHSMSDPG-TSYRTRDEIQEVRQTRDPISSLKDKILNASLVTPEELKRE 90
S M+ PG R D +EVRQT LKD I +++ E+L RE
Sbjct: 336 STSKMATPGIVGERHYDLAREVRQTLAQYEELKDII---AMLGLEQLSRE 382
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.130 0.357
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,593,574
Number of extensions: 360085
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 21
Length of query: 91
Length of database: 10,937,602
Length adjustment: 58
Effective length of query: 33
Effective length of database: 8,365,070
Effective search space: 276047310
Effective search space used: 276047310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.2 bits)