RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11439
         (91 letters)



>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate
           dehydrogenase (PP module) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 361

 Score = 68.4 bits (166), Expect = 8e-16
 Identities = 57/88 (64%), Positives = 67/88 (76%)

Query: 1   MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQ 60
           +    VDGMDIL VREA RFA  +CRS KGPIL+E  TYRY GH MSDPG SYRTR+EIQ
Sbjct: 220 IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQ 279

Query: 61  EVRQTRDPISSLKDKILNASLVTPEELK 88
           EVR   DPI  LKD+++N++L + EELK
Sbjct: 280 EVRSKSDPIMLLKDRMVNSNLASVEELK 307


>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP
           module {Pseudomonas putida [TaxId: 303]}
          Length = 407

 Score = 63.7 bits (154), Expect = 3e-14
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 1   MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQ 60
           + +  VDG D +AV  A+R+A    R   GP L+E  TYR   HS SD  + YR  D+  
Sbjct: 268 IASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWS 327

Query: 61  EVRQTRDPISSLKDKILNASLVTPEELK 88
                 DPI+ LK  ++     + EE +
Sbjct: 328 HFPL-GDPIARLKQHLIKIGHWSEEEHQ 354


>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid
           dehydrogenase, PP module {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 395

 Score = 61.4 bits (148), Expect = 2e-13
 Identities = 27/88 (30%), Positives = 44/88 (50%)

Query: 1   MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQ 60
           + +  VDG D+ AV  A + A     ++  P L+E  TYR    S SD  +++R+ DE+ 
Sbjct: 243 IMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVN 302

Query: 61  EVRQTRDPISSLKDKILNASLVTPEELK 88
              +   PIS L+  +L+      E+ K
Sbjct: 303 YWDKQDHPISRLRHYLLSQGWWDEEQEK 330


>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 365

 Score = 57.2 bits (137), Expect = 7e-12
 Identities = 26/88 (29%), Positives = 42/88 (47%)

Query: 1   MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQ 60
           +   +VDGMD LAV  A + A     + +GP L+ET  +RY  H+MS    +     E++
Sbjct: 225 IPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELE 284

Query: 61  EVRQTRDPISSLKDKILNASLVTPEELK 88
                +DP+   +  +    L + EE  
Sbjct: 285 NEWAKKDPLVRFRKFLEAKGLWSEEEEN 312


>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid
           dehydrogenase, PP module {Thermus thermophilus [TaxId:
           274]}
          Length = 362

 Score = 54.9 bits (131), Expect = 4e-11
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 1   MENKEVDGMDILAVREAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQ 60
           +    VDGMD+LA     + AV   R  +GP L+E   YRY  HS +D  + YR ++E+ 
Sbjct: 225 IPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVA 284

Query: 61  EVRQTRDPISSLKDKILNASLVTPEELK 88
             R+ +DPI   +  +    L   E  +
Sbjct: 285 FWRK-KDPIPRFRRFLEARGLWNEEWEE 311


>d1xp3a1 c.1.15.1 (A:2-298) Endonuclease IV {Bacillus anthracis
           [TaxId: 1392]}
          Length = 297

 Score = 27.0 bits (59), Expect = 0.29
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 16  EAARFAVNHCRSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQEVR-QTRDPISSLKD 74
           +A    V+H +    P +LET    Y G    D    Y  + EI+ ++  T D    L +
Sbjct: 240 KALHHIVHHPQLTHVPKILETP---YVGEDKKDKKPPY--KLEIEMLKNGTFDE--GLLE 292

Query: 75  KILN 78
           KI  
Sbjct: 293 KIKA 296


>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA,
          HIVp17, p17, MA) {Human immunodeficiency virus type 1
          [TaxId: 11676]}
          Length = 101

 Score = 24.9 bits (55), Expect = 1.1
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 7/25 (28%)

Query: 13 AVREAARFAVNHCRSDKGPILLETA 37
          A RE  RFAVN       P LLET+
Sbjct: 31 ASRELERFAVN-------PGLLETS 48


>d1v10a2 b.6.1.3 (A:137-304) Laccase {Rigidoporus lignosus [TaxId:
           219653]}
          Length = 168

 Score = 23.1 bits (49), Expect = 5.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 36  TATYRYSGHSMSDPGTS 52
           +A +RY G ++++P TS
Sbjct: 145 SAIFRYQGAAVAEPTTS 161


>d1tmoa1 b.52.2.2 (A:632-798) Trimethylamine N-oxide reductase
          {Shewanella massilia [TaxId: 76854]}
          Length = 167

 Score = 22.8 bits (48), Expect = 7.9
 Identities = 10/35 (28%), Positives = 13/35 (37%)

Query: 26 RSDKGPILLETATYRYSGHSMSDPGTSYRTRDEIQ 60
           SDK PI L++       HS       YR    + 
Sbjct: 8  GSDKHPIWLQSCHPDKRLHSQMCESREYRETYAVN 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.130    0.357 

Gapped
Lambda     K      H
   0.267   0.0463    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 326,020
Number of extensions: 12134
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 11
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.5 bits)