BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11442
         (1362 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q87TQ7|DNAA_VIBPA Chromosomal replication initiator protein DnaA OS=Vibrio
           parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
           GN=dnaA PE=3 SV=1
          Length = 468

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 13/101 (12%)

Query: 323 TKLNVKNVTFFSDSNIVLAWLR-----TAPHLLQTYVANRVVEINKLADGCKWYHVPT-- 375
            +LN   +T F+ +  VL W+R     +   LLQ Y  N +  + +   G +    P   
Sbjct: 31  AELNDNTLTLFAPNRFVLDWVRDKYLNSITRLLQEYCGNDIPNL-RFEVGSRPVSAPKPA 89

Query: 376 -SENPCDCASRGLLPQQLVS----HPLWWHGPQFLSSPDHQ 411
            +  P D A+    P QL +    H  W   PQ +++ +H+
Sbjct: 90  PTRTPADVAAESSAPAQLQARKPVHKTWDDDPQAIAAINHR 130


>sp|B5YHH6|GSA_THEYD Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermodesulfovibrio
           yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
           GN=hemL PE=3 SV=1
          Length = 427

 Score = 35.0 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 7/62 (11%)

Query: 257 YGGMVLSFSPLLIGQSYPSGFKFCNRGLIKAKSKVAPTKQLLSIPRLELCAALLLSRLYN 316
           Y   VLS+ PL++G +YPS  K   + + K  S  APT+       LE+  A L+ + + 
Sbjct: 54  YIDYVLSWGPLILGHAYPSVVKALKKAIEKGTSYGAPTE-------LEIKLATLVKKAFP 106

Query: 317 SL 318
           S+
Sbjct: 107 SI 108


>sp|Q9UT34|YIQ9_SCHPO Uncharacterized protein C824.09c OS=Schizosaccharomyces pombe (strain
            972 / ATCC 24843) GN=SPAC824.09c PE=4 SV=1
          Length = 320

 Score = 34.7 bits (78), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 1273 VLALKKVDLDSLSDFMLAHITLSKIDSETARLF-EMSLKSGEIPTFSKVHNFLKDQ 1327
            V  +K VDLDS +D    ++T  +  +E A L+ E  L  G +P+ SK+  F+K +
Sbjct: 63   VSRVKSVDLDSWTDEQTENMT--RWGNERANLYWEAKLAGGHVPSDSKIATFIKTK 116


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.135    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,525,639
Number of Sequences: 539616
Number of extensions: 19883949
Number of successful extensions: 48896
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 48893
Number of HSP's gapped (non-prelim): 13
length of query: 1362
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1232
effective length of database: 121,419,379
effective search space: 149588674928
effective search space used: 149588674928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)