RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11442
(1362 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.7 bits (180), Expect = 3e-13
Identities = 92/633 (14%), Positives = 189/633 (29%), Gaps = 189/633 (29%)
Query: 705 FTTLLCKIEAIL-RF-DERLAYADDVVLTG--ARCQSLPAVRDSFIEVLDK-WNS----C 755
F TLL K E ++ +F +E L +++ + + +IE D+ +N
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 756 KMQIDSTHTPDYSDLDKVL----------VY----CGHAQAKLEK-ALAAEVVPVRTERS 800
K + + Y L + L + G K +A +V + +
Sbjct: 128 KYNV--SRLQPYLKLRQALLELRPAKNVLIDGVLGSG-------KTWVALDVC--LSYKV 176
Query: 801 KVRLPALELPSFSGEFSEFNVFYESFKSLIHDNKELDNTQKVQYLVSKLSGKALTVCAGV 860
+ ++ F +F+ + K+ L+ QK+ Y + +
Sbjct: 177 QCKMD-------------FKIFWLNLKNCNSPETVLEMLQKLLYQIDP------NWTSR- 216
Query: 861 PATADNYSIIFNNLVEK---YQCKRSQAKAYLSNILNFKQIKGQNVNEVPELKK---SVK 914
+ N + +++ + + L +L NV S K
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLL-------NVQNAKAWNAFNLSCK 267
Query: 915 TLV------VTDSATAE-----SSNDLHDSFQKYSKLSKVQHVFAYVLRFIHNIHN---R 960
L+ VTD +A S + + S + +++ R
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS----LLL---KYLDCRPQDLPR 320
Query: 961 HAKLQGPLQIDGLNSSL-DLLTNLEQAFHFKQVLTSLKNDSPLK---DASLRKLTPFI-- 1014
P ++ + S+ D L + +K V N L ++SL L P
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDN---WKHV-----NCDKLTTIIESSLNVLEPAEYR 372
Query: 1015 ---DDAGLIRVGGRLHNADLPYHRKHPLLLPKIHIISSWLKLLNIIVFMFRFIHFLPRRD 1071
D + +A +P LL I W ++ V + ++ L +
Sbjct: 373 KMFDRLSVFPP-----SAHIPTI-----LLSLI-----WFDVIKSDVMV--VVNKLHKY- 414
Query: 1072 FISVSDRNFAEIAL-IKALQRQFFAKDIEALENNKEVSPSLRHLNPFLQNGLLRVGGRLS 1130
S+ ++ E + I ++ + K ++ + F + L+ L
Sbjct: 415 --SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP--YLD 470
Query: 1131 N---SSLGYEHKHPVILPKKHPNLNAEKSKVRLPALELPSFSGEFSEFNVFYESFKSLIH 1187
S +G+ H L +E + F + + F+ L
Sbjct: 471 QYFYSHIGH-H---------------------LKNIEH---PERMTLFRMVFLDFRFL-- 503
Query: 1188 DNKELDNTQKVQYLVSKLSGKALTVCAGVPAT---VDNYSIIFNNLVEKYQCKRSQA-KA 1243
QK+++ A + T + Y + Y C +
Sbjct: 504 -------EQKIRH-----DSTAWNASGSILNTLQQLKFY--------KPYICDNDPKYER 543
Query: 1244 YLSNILNFKQIKGESPDQLNSLIDELCASVLAL 1276
++ IL+F + + + S +AL
Sbjct: 544 LVNAILDF--LPKIEENLICS--KYTDLLRIAL 572
Score = 71.8 bits (175), Expect = 1e-12
Identities = 119/731 (16%), Positives = 213/731 (29%), Gaps = 245/731 (33%)
Query: 103 HEHCEVPLRQNEESTFKILSVFIGN--QQLTLSLIM-LLRSILS-APSDQFFISPSKVAP 158
H H + +++ ILSVF + + +SILS D +S V+
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 159 TKQLLSIPRLELCAALLLSRLYNSLHNYLTKLNVKNVTTFFSDSNIVLAWLRTAPHLLQT 218
T +L LLS+ + V F +
Sbjct: 64 TLRLFWT---------LLSK------------QEEMVQKFVEEV---------------- 86
Query: 219 YVANRVVEINNDITFLLRKILVIVLRVIYFPSNLFLIRYGGMVLSFSPLLIGQSYPSGF- 277
+ + FL+ I P ++ + Y
Sbjct: 87 --------LRINYKFLMSPI---------------------KTEQRQPSMMTRMYIEQRD 117
Query: 278 KFCNRGLIKAKSKVAPTKQLLSIPRLELCAALLLSRLYNSLHNYLTKLNVKNVTFFSDSN 337
+ N + AK ++ RL+ Y L L +L N
Sbjct: 118 RLYNDNQVFAK---------YNVSRLQ---------PYLKLRQALLELR-------PAKN 152
Query: 338 IVL--------AWLRTAPHLLQTYVANRVVEINKLADGCKWYHVPTSENPCDCASRGLLP 389
+++ W+ A + +Y +V K+ W ++ C+ L
Sbjct: 153 VLIDGVLGSGKTWV--ALDVCLSY---KVQC--KMDFKIFWLNL----KNCNSPETVLEM 201
Query: 390 QQLVSHPLWWHGPQFLSSPDHQWPSGQGQNVNEVPELKK--------------------- 428
Q + + + P + S DH S ++ + +
Sbjct: 202 LQKLLYQI---DPNWTSRSDH--SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 429 --------SVKTLV------VTDSATAE-----SSNDLHDSFQKYSQLSKVQRVFAYILR 469
S K L+ VTD +A S + + +V+ + L
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP----DEVKSLLLKYL- 311
Query: 470 FIHNVRN----RHAKLQGPLQIDGLNSSL-DLLTNLEQAFHFKQVLTSLKNDSPLK---D 521
+ R R P ++ + S+ D L + +K V N L +
Sbjct: 312 ---DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN---WKHV-----NCDKLTTIIE 360
Query: 522 ASLRKLTPFI-----DDAGLIRVGGRLHNADLPYHRKHPLLLPKLYA--------RIFAE 568
+SL L P D + +A +P LL ++ + +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPP-----SAHIPTI-----LLSLIWFDVIKSDVMVVVNK 410
Query: 569 CTGRFLCDRKTENINTNS--GVEMAMRVSTSMNLLPSHQSTVSRDVSGRYSIAMPFQHN- 625
L +++ + +T S + + ++V N H+S V Y+I F +
Sbjct: 411 LHKYSLVEKQPKE-STISIPSIYLELKV-KLENEYALHRSIVD-----HYNIPKTFDSDD 463
Query: 626 --PSNLGN---SYLGAERRFYSLERKLHANPSLLFSGV----AWSKFK----CKACRVLI 672
P L S++G + L+ H LF V + + K A
Sbjct: 464 LIPPYLDQYFYSHIG-----HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 673 SIIHALHGL----AYIKSAKHHLRRVIGAQLLTF---EEFTTLLCKIEAILRFDERLAYA 725
SI++ L L YI R++ A +L F E + K +LR L
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNA-ILDFLPKIEENLICSKYTDLLRI--ALMAE 575
Query: 726 DDVVLTGARCQ 736
D+ + A Q
Sbjct: 576 DEAIFEEAHKQ 586
Score = 66.4 bits (161), Expect = 6e-11
Identities = 75/507 (14%), Positives = 157/507 (30%), Gaps = 141/507 (27%)
Query: 86 ELRKWASNSQQLLNTVPH------------EHCEVPLRQNEESTFKILSVFIGNQQLTLS 133
+LR+ + N + + C + + FKI + + N +
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL-SYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 134 LIMLLRSILSAPSDQFFISPSKVAPTKQLLSIPRLELCAALLLSRLY-NSLHNYLTKLNV 192
++ +L+ +L + + K + + EL LL S+ Y N L L +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL-RRLLKSKPYENCL------LVL 250
Query: 193 KNVTTFFSDSNIVLAWLRTAPHLLQTYVANRVVEINNDITFLLRKILVIVLRVIYF-PSN 251
NV ++ A+ + LL T R ++ + ++ + + + P
Sbjct: 251 LNV----QNAKAWNAFNLSCKILLTT----RFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 252 L--FLIRYGGM--------VLSFSPLLIGQSYPSGFKFCNRGLIKAKSKVAP-------- 293
+ L++Y VL+ +P + +I +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRL-------------SIIAESIRDGLATWDNWKH 349
Query: 294 --TKQLLSIPRLELCAALL----LSRLYNSLHNYLTKLNVKNVTFFSDSNI---VLA--W 342
+L +I +E +L ++++ L F ++I +L+ W
Sbjct: 350 VNCDKLTTI--IESSLNVLEPAEYRKMFDRL-----------SVFPPSAHIPTILLSLIW 396
Query: 343 LRTAPHLLQTYVANRVVEINKLADGC---KW-----YHVPT--SENPCDCASRGLLPQQL 392
+ VV NKL K +P+ E + L + +
Sbjct: 397 FD-----VIKSDVMVVV--NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 393 VSH---PLWWHGPQFLSSPD----------HQWPSGQGQNVNEVPE-------LKKSVKT 432
V H P + + H + + L++ ++
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 433 LVVTDSATAESSNDLHDSFQKYSQL-----SKVQRVFAYILRFIHN-----VRNRHAKLQ 482
+A+ N L + Y K +R+ IL F+ + +++ L
Sbjct: 510 DSTAWNASGSILNTLQQ-LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL- 567
Query: 483 GPLQIDGLNSSLDLLTNLEQAFHFKQV 509
L+I L + + + E+A KQV
Sbjct: 568 --LRI-ALMAEDEAI--FEEA--HKQV 587
Score = 47.5 bits (112), Expect = 3e-05
Identities = 62/455 (13%), Positives = 140/455 (30%), Gaps = 125/455 (27%)
Query: 977 LDLLTNLEQAFHFKQVLT----SLKNDSPLKDASLRKLTPFIDDAGLIRVGGRLHNADLP 1032
+D T E + +K +L+ + ++ KD + D + L ++
Sbjct: 7 MDFETG-EHQYQYKDILSVFEDAFVDNFDCKD---------VQDM-PKSI---LSKEEI- 51
Query: 1033 YHRKHPLLLPKIHIISSWLKLLNIIV-----FMFRFIHFLPRRDFISVSDRNFAEIALIK 1087
H ++ +S L+L ++ + +F+ + R ++ +
Sbjct: 52 ---DHIIMSK--DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-IKTEQRQP 105
Query: 1088 ALQRQFFAKDIEALENNKEVSPSLRHLN---PF--LQNGLLRVGGRLSNSSLGYEHKHPV 1142
++ + + + + L N+ +V +++ P+ L+ LL L + V
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLE----LRPAKN-------V 153
Query: 1143 ILPKKHPNLNAEKSKVRLPALELPSFSGEFSEFNVFYESFKSLIHDNKELDNTQKVQYLV 1202
++ L + K+ V L + +F +F+ + K+ L+ QK+ Y +
Sbjct: 154 LI---DGVLGSGKTWVALDVCLSYKVQCKM-DFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 1203 SKLSGKALTVCAGVPATVDNYSIIFNNLV--EKY---------------------QCK-- 1237
+ + + + L+ + Y CK
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 1238 ---RSQAKAYLSNILNFKQI------KGESPDQLNSLIDELCASVLALKKVDL------- 1281
R + + I +PD++ L L + DL
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV----KSLLLKYLDCRPQDLPREVLTT 325
Query: 1282 ---------DSLSDFM-----LAHITLSKIDSETARLFEMSLKSGEIPTFSKVHN----F 1323
+S+ D + H+ K+ + E SL E + K+ + F
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLT----TIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 1324 LKDQVKI----LTRL--EAPTSGPSKVVASTSQKT 1352
I L+ + + S VV + +
Sbjct: 382 PPS-AHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Score = 45.2 bits (106), Expect = 2e-04
Identities = 65/499 (13%), Positives = 140/499 (28%), Gaps = 117/499 (23%)
Query: 920 DSATAE---SSND-LHDSFQKYSKLSKVQHVFAYVLRFIHNIHNRHAKLQGPLQIDGLNS 975
D T E D L + + V + H + + G
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-IMSKDAVSGTLR 66
Query: 976 SLDLL----TNLEQAFHFKQVLTSLKNDSPLKDASLRKLT--PFIDDAGLIRVGGRLHNA 1029
L + Q F V L+ + + ++ P + I RL+N
Sbjct: 67 LFWTLLSKQEEMVQKF----VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 1030 DLPYHRKHPLLLPKIHIISSWLKLL----NIIVF-MF------------RFIHFLPRRDF 1072
+ + + + L + L L N+++ + + DF
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 1073 ----ISVSDRNFAEIALIKALQRQFFAKDIEALENNKEVSPSLRHLNPFLQNGLLRVGGR 1128
+++ + N E +++ LQ+ + D + + S +++ +Q L R
Sbjct: 183 KIFWLNLKNCNSPE-TVLEMLQKLLYQIDPN-WTSRSDHSSNIKLRIHSIQAELRR---- 236
Query: 1129 LSNSSLGYEHKHP---VIL----PKKHPNLNA--EKSKVRLPALELPSFSGEFSEFNVFY 1179
L + ++L K NA K+ L F +
Sbjct: 237 -----LLKSKPYENCLLVLLNVQNAKA--WNAFNLSCKI----LLTTRFKQVTDFLSAAT 285
Query: 1180 ESFKSLIHDNKELDNTQKVQYL-------VSKLSGKALT----VCAGVPATVDNYSIIFN 1228
+ SL H + L + L L + LT + + ++ + ++
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 1229 NLVEKYQCKRSQAKAYLS-NILNFKQIK------------------------GESPDQLN 1263
N + C + S N+L + + +
Sbjct: 346 NW-KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 1264 SLI-DELCASVLALKKVDLDSLSDFMLAHITLSKIDSETARLFEMSLKSGEIPTFSKVHN 1322
++ ++L L K+ ++S + K+++E A +H
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA-----------------LHR 447
Query: 1323 FLKDQVKILTRLEAPTSGP 1341
+ D I ++ P
Sbjct: 448 SIVDHYNIPKTFDSDDLIP 466
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 70.1 bits (171), Expect = 5e-12
Identities = 89/488 (18%), Positives = 144/488 (29%), Gaps = 151/488 (30%)
Query: 392 LVSHPLWWHGPQ----FLSS-PDHQWPSGQGQNVNE---VPELKKSVKTLVVTDSATAES 443
LV ++ Q F P+ P+ +E EL K L S S
Sbjct: 21 LVPTASFFIASQLQEQFNKILPE---PTEGFAADDEPTTPAEL--VGKFLGYVSSLVEPS 75
Query: 444 SNDLHDSFQKYSQLSKVQRVFAYILRF--IHNVRNRHAKLQGPLQIDGLNSSLDLLTNLE 501
D L++ + + L IH + AKL L + +L+ N
Sbjct: 76 KVGQFDQVLNLC-LTEFENCY---LEGNDIHALA---AKLLQENDTT-LVKTKELIKNYI 127
Query: 502 QAFHFKQVLTSLKNDSPLKDASLRKLTPFIDDAGLIRV-GGRLHNADLPYHRKHPLLLPK 560
A + K++S L A +A L+ + GG+ + D Y + L
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEG------NAQLVAIFGGQGNTDD--YFEE----LRD 175
Query: 561 LYARIFAECTGRFLCDRKTENINTNSGVEMAMRVSTSMNLLPSHQSTVSRDVSGRYSIAM 620
LY + + G + S L S + D ++ +
Sbjct: 176 LY-QTYHVLVGDL--------------------IKFSAETL-SELIRTTLDAEKVFTQGL 213
Query: 621 PFQ---HNPSNL-GNSYLGAERRFYSLERKLHANPSLLFSGV-AWSKFKCKACRVLISII 675
NPSN YL L S GV + + ++L
Sbjct: 214 NILEWLENPSNTPDKDYL------------LSIPISCPLIGVIQLAHY-VVTAKLL---- 256
Query: 676 HALHGL------AYIKSAKHHLRRVIGAQLL----TFEEFTTLLCKIEAILRFDERLAYA 725
G +Y+K A H + ++ A + ++E F + K +L F
Sbjct: 257 ----GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL-F------- 304
Query: 726 DDVVLTGARCQ------SLP-------------------AVRDSFIEVLDKWNSCKMQID 760
G RC SLP ++ + E + ++
Sbjct: 305 ----FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD------YVN 354
Query: 761 ST--HTPDYSDL-------DKVLVYCGHAQA--KLEKALAAEVVPVRTERSKVRLPALE- 808
T H P + K LV G Q+ L L P ++S++ P E
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI--PFSER 412
Query: 809 LPSFSGEF 816
FS F
Sbjct: 413 KLKFSNRF 420
Score = 61.6 bits (149), Expect = 2e-09
Identities = 85/572 (14%), Positives = 162/572 (28%), Gaps = 191/572 (33%)
Query: 115 ESTFKI-LSVFIGNQQLTLSLIMLLRSILSAPSDQFFISPSKVAPTKQLLSIPRLELCAA 173
E + + F QL IL P++ F A + + EL
Sbjct: 17 EHVLLVPTASFFIASQLQEQFN----KILPEPTEGF-------AADDEPTTP--AELVGK 63
Query: 174 LLLSRLYNSLHNYLTKLNVKNVTTFFSDSNIVLAWLRTAPHLLQTYVANRVVEINNDITF 233
L Y++ L + F ++ L Y+ NDI
Sbjct: 64 FL---------GYVSSLVEPSKVGQFDQ--VLNLCLT---EFENCYLEG------NDIHA 103
Query: 234 LLRKILVIVLRVIYFPSNLFLIR--YGGMVLSFSPLLIGQSYPSG-FKFCNRGLIKAKSK 290
L K+L + LI+ +++ P + S F+ G ++
Sbjct: 104 LAAKLLQENDTTL--VKTKELIKNYITARIMAKRP--FDKKSNSALFRAVGEG----NAQ 155
Query: 291 VAPT-----------KQLLSI---------PRLELCAALLLSRLYNSLHNYLTKLNVKNV 330
+ ++L + ++ A L L + +
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE---------LIRTTLDAE 206
Query: 331 TFFSDSNIVLAWLR---TAP---HLLQTYVANRVVEINKLADGCKWYHVPTSENPCDCAS 384
F+ +L WL P +LL ++ ++ + +LA Y V
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA----HYVV-------TAKL 255
Query: 385 RGLLPQQLVSHPLWWHGPQFLSSPDHQWPSGQGQNVNEVPELKKSVKTLVVTDSATAESS 444
G P +L S+ + +G Q + V + + A +S
Sbjct: 256 LGFTPGELRSYL--------------KGATGHSQGL---------VTAVAI---AETDSW 289
Query: 445 NDLHDSFQKYSQL-----SKVQRVF---------------------AYILRFIHNVRN-R 477
S +K + + + + +L ++ N
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML----SISNLT 345
Query: 478 HAKLQGPLQIDGLNSSLDL-------LTNLEQAFHFKQVLT----SLKNDSPLKDASLRK 526
++Q ++ NS L L N + V++ SL L + +LRK
Sbjct: 346 QEQVQD--YVNKTNSHLPAGKQVEISLVNGAKNL----VVSGPPQSLYG---L-NLTLRK 395
Query: 527 L----------TPFIDDAGLIRVGGRLHNADLPYHRKHPLLLPKLYARIFAECTGR-FLC 575
PF + ++ R P+H LL+P I +
Sbjct: 396 AKAPSGLDQSRIPFSERK--LKFSNRFLPVASPFHS--HLLVPAS-DLINKDLVKNNVSF 450
Query: 576 DRKTENI---NTNSGVEMAMRVSTSMNLLPSH 604
+ K I +T G + +RV + ++
Sbjct: 451 NAKDIQIPVYDTFDGSD--LRVLSG-SISERI 479
Score = 61.6 bits (149), Expect = 2e-09
Identities = 85/509 (16%), Positives = 153/509 (30%), Gaps = 166/509 (32%)
Query: 912 SVKTLVVTDSATAESSNDLHDSFQKYS-KLSKVQHVFAYVLR--FIHNIHNRHAKLQGPL 968
S + L ++ H S + + + A L+ F + P
Sbjct: 5 STRPLTLS-----------HGSLE-HVLLVPTASFFIASQLQEQFNKIL---------PE 43
Query: 969 QIDGLNSSLDLLTNLEQAFHFKQVLTSLKNDSPLK--DASLRK-LTPFIDDAGLIRVGGR 1025
+G + + T E F ++SL S + D L LT F +
Sbjct: 44 PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY-------- 95
Query: 1026 LHNADLPYHRKHPLL--LPKIHIISSWLKLLNIIVFMFRFIHFLPRRDFISVSDRNFAEI 1083
L D+ H L L + + ++ +K +I R +
Sbjct: 96 LEGNDI-----HALAAKLLQEND-TTLVKTKELIKNYITARIMAKR------PFDKKSNS 143
Query: 1084 ALIKALQR---QFFAK-----DIEA-LENNKEVSPSLRHL----NPFLQNGLLRVGGRLS 1130
AL +A+ Q A + + E E LR L + + + + LS
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFE---E----LRDLYQTYHVLVGDLIKFSAETLS 196
Query: 1131 NSSLGYEHKHPVILPKKHPN-LNAEKSKVRLPALELPSFSGEFSEFNVFYESFKSLIHDN 1189
+ + K LN + LE PS + + S LI
Sbjct: 197 ELI-----RTTLDAEKVFTQGLNILE------WLENPSNTPDKDYLLSIPISCP-LI--- 241
Query: 1190 KELDNTQKVQYLVS-KLSG----------KALTVC------AGVPATVDNYSIIFNNLVE 1232
+ Q Y+V+ KL G K T A A D++ F ++ +
Sbjct: 242 -GV--IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298
Query: 1233 KYQC-----KRSQAKAYLSNILNFKQ-----------------IKGESPDQLNSLIDELC 1270
R +AY + L I + +Q+ +++
Sbjct: 299 AITVLFFIGVRCY-EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 1271 ASVLALKKVDLDSL----SDFMLA---------HITLSKIDSETARLFEMSLKSGEIPTF 1317
+ + A K+V++ SL + +++ ++TL K + + L IP F
Sbjct: 358 SHLPAGKQVEI-SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG------LDQSRIP-F 409
Query: 1318 SK-----VHNFLKDQVKILTRLEAPTSGP 1341
S+ + FL P + P
Sbjct: 410 SERKLKFSNRFL------------PVASP 426
Score = 60.4 bits (146), Expect = 4e-09
Identities = 79/505 (15%), Positives = 152/505 (30%), Gaps = 175/505 (34%)
Query: 669 RVLISIIHALHGLAYIKSAKHHLRRVIGAQLLTFEEFTTLL--------------CKIEA 714
++ + A +A +QL E+F +L E
Sbjct: 17 EHVLLVPTASFFIA--------------SQLQ--EQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 715 ILRFDERLAYADDVVLTGARCQSLPAVRDSFIEVLDKWNSCKMQIDSTHT-------PDY 767
+ +F L Y +V Q + L ++ +C ++ + H +
Sbjct: 61 VGKF---LGYVSSLVEPSKVGQFDQVLN----LCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 768 SDLDK----VLVY---CGHAQAKLEK----ALAAEVVPVRTERSKVRLPALELPSFSGE- 815
+ L K + Y A+ +K AL V +L A+ F G+
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV-----GEGNAQLVAI----FGGQG 164
Query: 816 -----FSEFNVFYESFKSLIHD-----NKELDNTQKVQYLVSKLSGKALTVCAGV--PAT 863
F E Y+++ L+ D + L + K+ + L + + P+
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 864 A--DNY------SIIFNNLVEKYQCKRSQAKAYLSNILNFKQIKGQNVNEVPELKKSVKT 915
+Y S ++ Q L++ + ++ G E+ K
Sbjct: 225 TPDKDYLLSIPISCPLIGVI---Q---------LAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 916 L---VVTDSATAESSN--DLHDSFQKYSKL-----SKVQHVF------------------ 947
+VT A AE+ + S +K + + +
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 948 ---AYVLRFIHNIHNRHAKLQGPLQIDGLNSSLDL-------LTNLEQAFHFKQVLT--- 994
+ +L I N+ ++Q ++ NS L L N + V++
Sbjct: 333 GVPSPMLS-ISNL--TQEQVQD--YVNKTNSHLPAGKQVEISLVNGAKNL----VVSGPP 383
Query: 995 -SLKNDSPLKDASLRKL----------TPFIDDAGLIRVGGRLHNADLPYHRKHPLLLPK 1043
SL L + +LRK PF + ++ R P+H LL+P
Sbjct: 384 QSLYG---L-NLTLRKAKAPSGLDQSRIPFSERK--LKFSNRFLPVASPFHS--HLLVPA 435
Query: 1044 IHIISSWLKL---------LNIIVF 1059
+I+ L + I V+
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVY 460
Score = 59.3 bits (143), Expect = 1e-08
Identities = 70/444 (15%), Positives = 132/444 (29%), Gaps = 151/444 (34%)
Query: 1002 LKDASLRKLTPFIDDAGLIRVGGRLHNADLPYHRKHPLLLP-KIHIISSWLK-------- 1052
+ S R P L + L +H LL+P I+S L+
Sbjct: 1 MDAYSTR---PLT-----------LSHGSL----EHVLLVPTASFFIASQLQEQFNKILP 42
Query: 1053 -----------------LLNIIVFMFRFIHFLPRRDFISVSDRN-FAEI--ALIKALQRQ 1092
L+ +F+ ++ + S F ++ + +
Sbjct: 43 EPTEGFAADDEPTTPAELV------GKFLGYVSSL--VEPSKVGQFDQVLNLCLTEFENC 94
Query: 1093 FFA-KDIEALENNKEVSPSLRHLNPFLQNGLLRVGGRLSNSSLGYEH-----KHPVILPK 1146
+ DI AL L L++ + N Y K P K
Sbjct: 95 YLEGNDIHAL---------AAKLLQENDTTLVKTKELIKN----YITARIMAKRP--FDK 139
Query: 1147 KHPNL---NAEKSKVRLPALELPSFSGE------FSEFNVFYESFKSLIHD-----NKEL 1192
K + + +L A+ F G+ F E Y+++ L+ D + L
Sbjct: 140 KSNSALFRAVGEGNAQLVAI----FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 1193 DNTQKVQYLVSKLSGKALTVCAGV--PATV--DNY------SIIFNNLVEKYQCKRSQAK 1242
+ K+ + L + + P+ +Y S ++ Q
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI---Q------- 245
Query: 1243 AYLSNILNFKQIKGESPDQLNSLI--------DELCASVLALKKVDLDSLSDF------- 1287
L++ + ++ G +P +L S + + A +A DS F
Sbjct: 246 --LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET----DSWESFFVSVRKA 299
Query: 1288 --MLAHI------TLSKIDSETARLFEMSLKSGE-IPT--FSKVHNFLKDQV-KILTRLE 1335
+L I + E SL++ E +P+ S + N ++QV + +
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLP-PSILEDSLENNEGVPSPMLS-ISNLTQEQVQDYVNKTN 357
Query: 1336 APTSGPSKVVASTSQKTSPPNKVV 1359
+ P+ S N VV
Sbjct: 358 S--HLPAGKQVEISLVNGAKNLVV 379
Score = 47.0 bits (111), Expect = 5e-05
Identities = 63/368 (17%), Positives = 108/368 (29%), Gaps = 162/368 (44%)
Query: 598 MNLLPSHQSTVSRDVSGR----------YSIAMPFQHNPSNLGNSYLGAERRFYSLERKL 647
M+L + S ++DV R +SI +NP NL + G E+ +++
Sbjct: 1633 MDLYKT--SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL-TIHFGGEK-----GKRI 1684
Query: 648 HAN-PSLLFSGVAWSKFKCKACRVLISIIHALHGLAYIKSAKHHLRRVI--G-AQLLTFE 703
N +++F + K K + K H LL+
Sbjct: 1685 RENYSAMIFETIVDGKLKTEK---------------IFKEINEHSTSYTFRSEKGLLSAT 1729
Query: 704 EFTTLLCKIEAILRFDERLAYADDVVLTGARCQSLPA---VRDSFIEVLDKWNSCKMQID 760
+FT Q PA + + E L + D
Sbjct: 1730 QFT-----------------------------Q--PALTLMEKAAFEDLKSKGL--IPAD 1756
Query: 761 STHTPDYSDLDKVLVYCGH---------AQA---KLEKA---------LAAEVVPVRTE- 798
+ + GH + A +E VP R E
Sbjct: 1757 A-------------TFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVP-RDEL 1802
Query: 799 -RSKVRLPALELPSFSGEFSEFNVFYESFKSLI----HDNKEL-----DNTQKVQYLVSK 848
RS + A+ + FS+ E+ + ++ L N + QY
Sbjct: 1803 GRSNYGMIAINPGRVAASFSQ-----EALQYVVERVGKRTGWLVEIVNYNVENQQY---- 1853
Query: 849 LSGKALTVCAG-VPATADNYSIIFNNLVEKYQCKRSQAKAYLSNILNFKQIKGQNVNEVP 907
V AG + A ++ ++N+LNF IK Q + ++
Sbjct: 1854 -------VAAGDLRA------------LDT-----------VTNVLNF--IKLQKI-DII 1880
Query: 908 ELKKSVKT 915
EL+KS+
Sbjct: 1881 ELQKSLSL 1888
Score = 40.8 bits (95), Expect = 0.003
Identities = 39/194 (20%), Positives = 62/194 (31%), Gaps = 68/194 (35%)
Query: 1172 FSEFNVFYESFKSLI--HDNKELDNTQKVQ---YLVSK-----LSGK------------- 1208
F E N E S + L TQ Q L+ K L K
Sbjct: 1707 FKEIN---EHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS 1763
Query: 1209 -----ALTVCAGV---PATVDNYSIIF------NNLVEKYQCKRSQAKAYLSNILNFKQI 1254
AL A V + V+ ++F V + + RS Y +N ++
Sbjct: 1764 LGEYAALASLADVMSIESLVE---VVFYRGMTMQVAVPRDELGRSN---YGMIAINPGRV 1817
Query: 1255 -KGESPDQLNSLIDELCAS-----------------VLALKKVDLDSLSDFMLAHITLSK 1296
S + L +++ + V A LD++++ +L I L K
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTN-VLNFIKLQK 1876
Query: 1297 IDSETARLFE-MSL 1309
ID L + +SL
Sbjct: 1877 ID--IIELQKSLSL 1888
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.008
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 1325 KDQVKILT---RLEAPTSGPSKVVAST 1348
K +K L +L A S P+ + +T
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKAT 45
Score = 32.2 bits (72), Expect = 0.55
Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 24/48 (50%)
Query: 1232 EKYQCKRSQA--KAYLSNILNFKQIKGESPDQLNSLIDELCASVLALK 1277
EK K+ QA K Y + D A LA+K
Sbjct: 18 EKQALKKLQASLKLY-------------ADDS---------APALAIK 43
Score = 31.5 bits (70), Expect = 0.93
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 8/29 (27%)
Query: 896 KQIKGQNVNEVPELKKSVKTLVVTDSATA 924
KQ + +L+ S+K L DSA A
Sbjct: 19 KQ-------ALKKLQASLK-LYADDSAPA 39
Score = 31.1 bits (69), Expect = 1.3
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 421 NEVPELKKSVKTLVVTDSATA 441
+ +L+ S+K L DSA A
Sbjct: 20 QALKKLQASLK-LYADDSAPA 39
Score = 29.9 bits (66), Expect = 3.6
Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 39/67 (58%)
Query: 295 KQLLSIPRLELCAALLLSRLYNSLHNYLTKLNVKNVTFFSDSNIVLAWLRTAPHLLQTYV 354
KQ ++ +L+ SL KL + DS AP L
Sbjct: 19 KQ--ALKKLQ-----------ASL-----KL------YADDS---------APAL----- 40
Query: 355 A-NRVVE 360
A +E
Sbjct: 41 AIKATME 47
Score = 29.5 bits (65), Expect = 4.8
Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 40/68 (58%)
Query: 160 KQLLSIPRLELCAALLLSRLYNSLHNYLTKLNVKNVTTFFSDSNIVLAWLRTAPHLLQTY 219
KQ ++ +L+ SL KL + DS AP L
Sbjct: 19 KQ--ALKKLQ-----------ASL-----KL-------YADDS---------APAL---- 40
Query: 220 VA-NRVVE 226
A +E
Sbjct: 41 -AIKATME 47
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain, SEDL,
transport protein; HET: GTP; 2.45A {Mus musculus} SCOP:
c.37.1.8 PDB: 2go5_2
Length = 214
Score = 30.1 bits (68), Expect = 4.3
Identities = 20/142 (14%), Positives = 40/142 (28%), Gaps = 39/142 (27%)
Query: 885 AKAYLSNILNFKQIKGQNVNEVPELKKSVKTLVV---TDSATAESSNDLHDSFQKYSKLS 941
+L +L + LK S L+ D A A+S+ + +K
Sbjct: 98 VAEFLYQVLI----------DSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEK----- 142
Query: 942 KVQHVFAYVLRFIHNIHNRHAKLQGPLQIDGLNSSLDLLTNLEQAFHFKQVLT------- 994
R + P +D +++ L + F F Q+
Sbjct: 143 -------------ELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLEC 189
Query: 995 -SLKNDSPLKDASLRKLTPFID 1015
+ A ++ L ++
Sbjct: 190 SAKGGRGDTGSADIQDLEKWLA 211
Score = 29.7 bits (67), Expect = 6.0
Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 29/120 (24%)
Query: 424 PELKKSVKTLVV---TDSATAESSNDLHDSFQKYSQLSKVQRVFAYILRFIHNVRNRHAK 480
LK S L+ D A A+S+ + +K R +
Sbjct: 110 MALKNSPSLLIACNKQDIAMAKSAKLIQQQLEK------------------ELNTLRVTR 151
Query: 481 LQGPLQIDGLNSSLDLLTNLEQAFHFKQVLT--------SLKNDSPLKDASLRKLTPFID 532
P +D +++ L + F F Q+ + A ++ L ++
Sbjct: 152 SAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLA 211
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer,
retroviral protease domain, protein turnover; HET: DNA;
2.30A {Saccharomyces cerevisiae}
Length = 148
Score = 28.9 bits (64), Expect = 6.2
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 19 IRVIVDPGSQVSCITNDCVQRLGLKRYKCGISISGIGDNGVPDNKGAV 66
++ VD G+Q + ++ ++ GL R I G G +
Sbjct: 38 VKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTGKIIGRI 85
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural
genomics consortiu retropepsin-like domain, protein
turnover, hydrolase; 1.70A {Homo sapiens}
Length = 148
Score = 28.6 bits (63), Expect = 7.5
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 19 IRVIVDPGSQVSCITNDCVQRLGLKR 44
++ VD G+Q++ ++ C +R + R
Sbjct: 36 LKAFVDSGAQMTIMSQACAERCNIMR 61
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.393
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 19,776,207
Number of extensions: 1185557
Number of successful extensions: 2114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2091
Number of HSP's successfully gapped: 24
Length of query: 1362
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1257
Effective length of database: 3,770,088
Effective search space: 4739000616
Effective search space used: 4739000616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.6 bits)