RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11442
         (1362 letters)



>d1zh5a1 a.4.5.46 (A:5-103) Lupus La autoantigen N-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 99

 Score = 27.4 bits (61), Expect = 3.9
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 879 QCKRSQAKAYLSNILNFKQIK--GQNVNEVPE-LKKSVKTLVVTD 920
           Q K  +    L  ++ F ++     + N + E L KS   L+   
Sbjct: 35  QIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEIS 79



 Score = 26.3 bits (58), Expect = 8.9
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 1235 QCKRSQAKAYLSNILNFKQIKGESPDQLNSLIDELCASVLALKKVDLD 1282
            Q K  +    L  ++ F ++   + D  N +++ L  S   L ++  D
Sbjct: 35   QIKLDEGWVPLEIMIKFNRLNRLTTD-FNVIVEALSKSKAELMEISED 81


>d2idga1 a.184.1.1 (A:1-160) Hypothetical protein AF0160
            {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 160

 Score = 27.2 bits (60), Expect = 8.3
 Identities = 9/40 (22%), Positives = 14/40 (35%)

Query: 1057 IVFMFRFIHFLPRRDFISVSDRNFAEIALIKALQRQFFAK 1096
            I     F+  L  R+          E+  I+A Q +F   
Sbjct: 91   IAVELAFMSKLVEREISLAQQMKEEELYKIRAAQHRFIKA 130


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,791,093
Number of extensions: 224955
Number of successful extensions: 444
Number of sequences better than 10.0: 1
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 5
Length of query: 1362
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1266
Effective length of database: 1,089,516
Effective search space: 1379327256
Effective search space used: 1379327256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.8 bits)