BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11446
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E0W|A Chain A, T391a Precursor Mutant Protein Of
Gamma-Glutamyltranspeptidase From Escherichia Coli
pdb|2E0W|B Chain B, T391a Precursor Mutant Protein Of
Gamma-Glutamyltranspeptidase From Escherichia Coli
Length = 556
Score = 70.5 bits (171), Expect = 3e-13, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 7/137 (5%)
Query: 12 NILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAAT 71
+IL++GGNAVDAA+ ++ PQ+ LGGG M + +K G AI+ RE APA AT
Sbjct: 40 DILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRSK-NGNTTAIDFREMAPAKAT 98
Query: 72 LGMF---HGN--YKAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGV 126
MF GN K + T LA+ P V G+ ++ G +P + + LA +G
Sbjct: 99 RDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKY-GTMPLNKVVQPAFKLARDGF 157
Query: 127 NINHHLAKNIRLYEDHI 143
+N LA +++ Y +
Sbjct: 158 IVNDALADDLKTYGSEV 174
>pdb|2Z8I|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8I|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8J|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8J|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8K|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
pdb|2Z8K|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
Length = 366
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 12 NILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAAT 71
+IL++GGNAVDAA+ ++ PQ+ LGGG M + +K G AI+ RE APA AT
Sbjct: 40 DILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRSK-NGNTTAIDFREMAPAKAT 98
Query: 72 LGMF---HGN--YKAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGV 126
MF GN K + T LA+ P V G+ ++ G +P + + LA +G
Sbjct: 99 RDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKY-GTMPLNKVVQPAFKLARDGF 157
Query: 127 NINHHLAKNIRLY 139
+N LA +++ Y
Sbjct: 158 IVNDALADDLKTY 170
>pdb|2V36|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
pdb|2V36|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
Length = 376
Score = 68.9 bits (167), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 7/141 (4%)
Query: 12 NILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAAT 71
++L+KGGNA+DAA+ ++ P G+GGG M +Y+ T I++RE+APA AT
Sbjct: 36 DVLKKGGNAIDAAVAIQFALNVTEPMMSGIGGGGFMMVYDGKTKDTTIIDSRERAPAGAT 95
Query: 72 LGMFHGN------YKAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNG 125
MF + T A +P + G ++G + L I LA G
Sbjct: 96 PDMFLDENGKAIPFSERVTKGTAVGVPGTLKGLEEALDKWGTRS-MKQLITPSIKLAEKG 154
Query: 126 VNINHHLAKNIRLYEDHIRRS 146
I+ LA+ I Y++ + R+
Sbjct: 155 FPIDSVLAEAISDYQEKLSRT 175
>pdb|3A75|A Chain A, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
pdb|3A75|C Chain C, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
Length = 384
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 7/141 (4%)
Query: 12 NILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAAT 71
++L+KGGNA+DAA+ ++ P G+GGG M +Y+ T I++RE+APA AT
Sbjct: 44 DVLKKGGNAIDAAVAIQFALNVTEPMMSGIGGGGFMMVYDGKTKDTTIIDSRERAPAGAT 103
Query: 72 LGMFHGN------YKAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNG 125
MF + T A +P + G ++ G + L I LA G
Sbjct: 104 PDMFLDENGKAIPFSERVTKGTAVGVPGTLKGLEEALDKW-GTRSMKQLITPSIKLAEKG 162
Query: 126 VNINHHLAKNIRLYEDHIRRS 146
I+ LA+ I Y++ + R+
Sbjct: 163 FPIDSVLAEAISDYQEKLSRT 183
>pdb|2NQO|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2NQO|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
Length = 376
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 11 RNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAA 70
+ +L +GGNA+DAA+ + P + +GGG ++ G+ A++ REKAP A
Sbjct: 49 QKVLEEGGNAIDAAVAIGFALAVVHPAAGNIGGGGFAVIH-LANGENVALDFREKAPLKA 107
Query: 71 TLGMF---HGNY--KAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNG 125
T MF GN K ++ G LAA +P V G + ++G L + I LA NG
Sbjct: 108 TKNMFLDKQGNVVPKLSEDGYLAAGVPGTVAGMEAMLKKYGTK-KLSQLIDPAIKLAENG 166
Query: 126 VNINHHLAKNIR 137
I+ A+ ++
Sbjct: 167 YAISQRQAETLK 178
>pdb|2QM6|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QM6|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QMC|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|2QMC|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|3FNM|A Chain A, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
pdb|3FNM|C Chain C, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
Length = 377
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 11 RNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAA 70
+ +L +GGNA+DAA+ + P + +GGG ++ G+ A++ REKAP A
Sbjct: 50 QKVLEEGGNAIDAAVAIGFALAVVHPAAGNIGGGGFAVIH-LANGENVALDFREKAPLKA 108
Query: 71 TLGMF---HGNY--KAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNG 125
T MF GN K ++ G LAA +P V G + ++G L + I LA NG
Sbjct: 109 TKNMFLDKQGNVVPKLSEDGYLAAGVPGTVAGMEAMLKKYGTK-KLSQLIDPAIKLAENG 167
Query: 126 VNINHHLAKNIR 137
I+ A+ ++
Sbjct: 168 YAISQRQAETLK 179
>pdb|2DBU|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBU|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBW|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBW|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBX|A Chain A, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DBX|C Chain C, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DG5|A Chain A, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2DG5|C Chain C, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2E0X|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0X|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0Y|A Chain A, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
pdb|2E0Y|C Chain C, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
Length = 366
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 68/133 (51%), Gaps = 7/133 (5%)
Query: 12 NILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAAT 71
+IL++GGNAVDAA+ ++ PQ+ LGGG + +K G AI+ RE APA AT
Sbjct: 40 DILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFXLIRSK-NGNTTAIDFREXAPAKAT 98
Query: 72 LGMF---HGN--YKAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGV 126
F GN K + T LA+ P V G+ ++ G P + + LA +G
Sbjct: 99 RDXFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKY-GTXPLNKVVQPAFKLARDGF 157
Query: 127 NINHHLAKNIRLY 139
+N LA +++ Y
Sbjct: 158 IVNDALADDLKTY 170
>pdb|2I3O|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
Length = 516
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 58/140 (41%), Gaps = 14/140 (10%)
Query: 11 RNILRKGGNAVDA--AITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPA 68
R+IL++GGN DA A++A LC ++ GLGG L L G+ +N +A
Sbjct: 27 RDILKRGGNIFDAALAVSAXLC--VTQNNLCGLGGD-LFALIRDENGQIXDLNGSGQASR 83
Query: 69 AATLGMFH--GNYKAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGV 126
A ++ + G K + G AA + G W R D+ E I A G
Sbjct: 84 AVSIDYYESXGLTKIPERGPYAAITVPGIAGSWDEIFRKFATXDIADILEPAIRTASAGF 143
Query: 127 NINHHLAKNIRLYEDHIRRS 146
I + Y D I RS
Sbjct: 144 PITQN-------YSDSIARS 156
>pdb|2NLZ|A Chain A, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|B Chain B, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|C Chain C, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|D Chain D, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
Length = 547
Score = 28.1 bits (61), Expect = 1.9, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 6/136 (4%)
Query: 12 NILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAAT 71
+IL+ GGNA+DAAI + P S G+G ++ K GK + +N +AP + T
Sbjct: 39 DILKAGGNAIDAAIATATALTVLEPTSNGIGSDAFALVWTK--GKLHGLNGSGRAPMSLT 96
Query: 72 LGMFHGN---YKAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNI 128
+ + G + +P G W + G +P I A G +
Sbjct: 97 MEAVKAKGYEQELPPYGVIPVTVPG-APGAWAELAKMYGNLPLAASLAPAIRYAEEGYPV 155
Query: 129 NHHLAKNIRLYEDHIR 144
LAK + D ++
Sbjct: 156 TPTLAKYWKAAYDRVK 171
>pdb|3G9K|L Chain L, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3G9K|D Chain D, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3GA9|L Chain L, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd, Crystal Form Ii
Length = 323
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 13 ILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAATL 72
+L+ GG+AVDAAI G+ + G+GGG + +K K I+ RE P
Sbjct: 37 VLKNGGSAVDAAIVVSYVLGVVELHASGIGGGGGXLIISKD--KETFIDYRETTP----- 89
Query: 73 GMFHGNYKAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNINHHL 132
F GN K +P V G ++ + G +P +L + I A G ++ L
Sbjct: 90 -YFTGNQKP------HIGVPGFVAGXEYIHDNY-GSLPXGELLQPAINYAEKGFKVDDSL 141
Query: 133 AKNI-----RLYEDHI 143
+ R+Y D +
Sbjct: 142 TXRLDLAKPRIYSDKL 157
>pdb|1YZY|A Chain A, Crystal Structure Of Haemophilus Influenzae Protein
Hi1011, Pfam Duf1537
pdb|1YZY|B Chain B, Crystal Structure Of Haemophilus Influenzae Protein
Hi1011, Pfam Duf1537
Length = 413
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 85 GALAAAIPAEVLGYWTVYH---RFGGGVPWRDLFEEPIALALNGVNI 128
G ++I + LG+ T +H + GVPW EE I LAL N
Sbjct: 354 GGETSSIVVQELGF-TGFHIGKQIAPGVPWLKAVEEDIFLALKSGNF 399
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,562,466
Number of Sequences: 62578
Number of extensions: 179428
Number of successful extensions: 356
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 13
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)