Query psy11446
Match_columns 150
No_of_seqs 138 out of 1039
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 18:41:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11446.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11446hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0405 Ggt Gamma-glutamyltran 100.0 4.7E-48 1E-52 341.5 15.0 146 2-149 22-173 (539)
2 PLN02180 gamma-glutamyl transp 100.0 5E-48 1.1E-52 347.7 15.0 147 2-149 88-234 (639)
3 PLN02198 glutathione gamma-glu 100.0 8.9E-48 1.9E-52 343.4 15.6 146 2-149 39-184 (573)
4 TIGR00066 g_glut_trans gamma-g 100.0 9E-48 1.9E-52 339.8 14.7 145 2-147 6-155 (516)
5 PRK09615 ggt gamma-glutamyltra 100.0 2.3E-46 4.9E-51 334.7 15.2 146 2-149 55-206 (581)
6 KOG2410|consensus 100.0 8.2E-46 1.8E-50 327.2 11.8 147 2-149 56-202 (579)
7 PF01019 G_glu_transpept: Gamm 100.0 2.6E-45 5.6E-50 323.5 10.8 138 11-149 1-140 (510)
8 PLN02689 Bifunctional isoaspar 91.4 0.38 8.3E-06 41.0 5.0 40 4-43 32-71 (318)
9 cd04702 ASRGL1_like ASRGL1_lik 90.0 0.62 1.4E-05 38.7 4.9 40 4-43 26-65 (261)
10 PRK10226 isoaspartyl peptidase 90.0 0.58 1.3E-05 39.8 4.8 39 4-43 33-72 (313)
11 cd04701 Asparaginase_2 L-Aspar 88.0 1 2.3E-05 37.4 4.9 40 4-43 29-68 (260)
12 PF01112 Asparaginase_2: Aspar 87.6 1.2 2.6E-05 37.9 5.1 41 4-44 31-71 (319)
13 cd04514 Taspase1_like Taspase1 86.3 1.5 3.2E-05 37.2 4.9 41 4-44 25-65 (303)
14 cd04513 Glycosylasparaginase G 86.0 1.2 2.5E-05 37.1 4.1 39 4-43 9-49 (263)
15 PLN02937 Putative isoaspartyl 85.5 1.6 3.5E-05 38.5 5.0 41 4-44 36-77 (414)
16 cd04512 Ntn_Asparaginase_2_lik 83.1 2.6 5.6E-05 34.8 4.9 40 4-43 23-62 (248)
17 COG1446 Asparaginase [Amino ac 68.5 6.7 0.00014 33.4 3.6 39 3-42 27-66 (307)
18 COG0376 KatG Catalase (peroxid 59.0 21 0.00044 33.1 5.1 67 43-117 95-163 (730)
19 cd08180 PDD 1,3-propanediol de 58.4 26 0.00056 29.3 5.5 84 17-105 87-182 (332)
20 cd04703 Asparaginase_2_like A 51.7 31 0.00067 28.5 4.7 38 4-43 21-58 (246)
21 PF00465 Fe-ADH: Iron-containi 47.3 51 0.0011 27.8 5.6 84 17-105 87-194 (366)
22 cd08176 LPO Lactadehyde:propan 42.7 71 0.0015 27.3 5.8 84 17-105 94-200 (377)
23 cd08182 HEPD Hydroxyethylphosp 40.3 69 0.0015 27.1 5.3 84 17-105 86-196 (367)
24 cd08551 Fe-ADH iron-containing 39.1 76 0.0017 26.8 5.4 84 17-105 89-195 (370)
25 cd08192 Fe-ADH7 Iron-containin 38.8 83 0.0018 26.7 5.6 84 17-105 90-200 (370)
26 cd08188 Fe-ADH4 Iron-containin 38.4 86 0.0019 26.8 5.6 84 17-105 94-200 (377)
27 cd08189 Fe-ADH5 Iron-containin 37.7 97 0.0021 26.4 5.8 84 17-105 92-199 (374)
28 PF11848 DUF3368: Domain of un 36.4 98 0.0021 18.6 4.6 40 93-137 4-44 (48)
29 PF15116 CD52: CAMPATH-1 antig 34.3 27 0.00059 21.3 1.3 15 35-49 18-32 (44)
30 cd08181 PPD-like 1,3-propanedi 33.7 1E+02 0.0022 26.1 5.3 84 17-105 92-197 (357)
31 PF15505 DUF4648: Domain of un 33.2 34 0.00074 26.5 2.1 25 81-105 132-156 (170)
32 cd08183 Fe-ADH2 Iron-containin 32.3 1.3E+02 0.0029 25.6 5.8 84 17-105 84-194 (374)
33 smart00685 DM14 Repeats in fly 31.8 38 0.00082 21.9 1.8 19 112-130 34-52 (59)
34 PF09691 PulS_OutS: Bacterial 31.5 1.9E+02 0.004 20.9 5.6 47 93-139 28-77 (109)
35 KOG1592|consensus 31.5 80 0.0017 27.2 4.2 39 5-43 29-67 (326)
36 TIGR02638 lactal_redase lactal 29.8 1.5E+02 0.0033 25.3 5.8 84 17-105 95-203 (379)
37 PRK10624 L-1,2-propanediol oxi 28.3 1.4E+02 0.0031 25.5 5.3 84 17-105 96-204 (382)
38 COG2605 Predicted kinase relat 25.6 86 0.0019 27.0 3.4 37 20-56 267-303 (333)
39 cd08179 NADPH_BDH NADPH-depend 24.9 1.8E+02 0.004 24.7 5.4 84 17-105 90-199 (375)
40 PRK14045 1-aminocyclopropane-1 24.2 1.6E+02 0.0034 24.7 4.8 41 103-145 258-300 (329)
41 cd08191 HHD 6-hydroxyhexanoate 23.8 2E+02 0.0043 24.6 5.4 90 17-111 88-200 (386)
42 cd03206 GST_C_7 GST_C family, 23.8 1.6E+02 0.0035 19.4 4.0 43 106-149 57-100 (100)
43 PRK15454 ethanol dehydrogenase 21.9 2.3E+02 0.0049 24.5 5.4 84 17-105 115-221 (395)
44 PF13852 DUF4197: Protein of u 21.9 1.7E+02 0.0037 23.3 4.3 55 89-150 133-192 (202)
45 cd08193 HVD 5-hydroxyvalerate 21.2 2E+02 0.0044 24.4 5.0 83 17-105 92-197 (376)
46 cd08170 GlyDH Glycerol dehydro 21.0 1.7E+02 0.0038 24.5 4.4 83 17-105 86-173 (351)
47 TIGR03175 AllD ureidoglycolate 20.6 2.2E+02 0.0047 24.6 5.0 47 83-147 296-342 (349)
No 1
>COG0405 Ggt Gamma-glutamyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-48 Score=341.52 Aligned_cols=146 Identities=36% Similarity=0.565 Sum_probs=137.1
Q ss_pred CchHHHHHHHHHHHcCCCHHHHHHHHHHHhHhhcCCCCCCccCeeeEEEECCCC-cEEEEeeeccccccCCcchhcCC-c
Q psy11446 2 KLNVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTG-KAYAINAREKAPAAATLGMFHGN-Y 79 (150)
Q Consensus 2 ~~~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGGg~~~l~~~~~~~-~~~~id~~~~aP~~~~~~~~~~~-~ 79 (150)
.|++||++|.+||++||||||||||+++||+|||||+||||||+|||||+ +++ +++.|||||+||++++.++|.+. .
T Consensus 22 ~~~lAs~aG~~iL~~GGNA~DAAVA~~~~L~VveP~ssGiGGggF~l~~~-~~~~~~~~ld~re~AP~~at~~~~~~~~g 100 (539)
T COG0405 22 SHPLASQAGLDILKKGGNAVDAAVAVAAALAVVEPQSSGIGGGGFMLIRD-KTGGKVTALDGRETAPAAATKEMYLDKDG 100 (539)
T ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccccCCCCCCeEEEEEe-CCCCceEEEeccccCcccCChhheeccCC
Confidence 48999999999999999999999999999999999999999999999999 555 89999999999999999965443 3
Q ss_pred ----cccccCCcccccchHHHHHHHHHHHcCCCCChHHhhHHHHHHhhCCCccCHHHHHHHHHhHHHhhcCCCC
Q psy11446 80 ----KAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNINHHLAKNIRLYEDHIRRSPQL 149 (150)
Q Consensus 80 ----~~~~~g~~sv~VPG~~~g~~~~~~~~gG~l~w~~ll~PaI~lA~~Gf~v~~~l~~~l~~~~~~l~~~p~~ 149 (150)
..+..|+++|+|||+++||+++|+|| |+|||++||+|||+|||+||+|++.++..++...+.|.++|..
T Consensus 101 ~~~~~~~~~G~~av~VPG~v~gl~~~~~~y-G~l~~~~ll~PAi~lA~~Gf~v~~~~~~~~~~~~~~l~~~~~~ 173 (539)
T COG0405 101 QVDPELPVRGGLAVGVPGTVAGLEEAHKRY-GTLPWADLLEPAIKLARDGFPVSPRLAALIASAAERLAKDPET 173 (539)
T ss_pred cccccccccCCcccccCchHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCccCHHHHHHHhhhhHHHhhChhh
Confidence 57889999999999999999999999 9999999999999999999999999999999999999998864
No 2
>PLN02180 gamma-glutamyl transpeptidase 4
Probab=100.00 E-value=5e-48 Score=347.75 Aligned_cols=147 Identities=35% Similarity=0.615 Sum_probs=139.9
Q ss_pred CchHHHHHHHHHHHcCCCHHHHHHHHHHHhHhhcCCCCCCccCeeeEEEECCCCcEEEEeeeccccccCCcchhcCCccc
Q psy11446 2 KLNVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAATLGMFHGNYKA 81 (150)
Q Consensus 2 ~~~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGGg~~~l~~~~~~~~~~~id~~~~aP~~~~~~~~~~~~~~ 81 (150)
+|++||++|.+||++||||||||||+++||+|||||+||||||+|||||+++++++++|||+|+||..++.++|.+....
T Consensus 88 ~~plAs~aG~~IL~~GGNAVDAAVAaa~aL~VveP~~sGiGGggf~lv~~~~~~~~~~id~re~AP~~a~~d~~~~~~~~ 167 (639)
T PLN02180 88 DDARCSEIGASVLRRGGHAVDAAVAITLCIGVVNPMSSGIGGGSFLIVSSQKDSKAEAFDMRETAPLAASKDMYKNDASA 167 (639)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEEECCCCcEEEEeCcccccccCCHHHHhcCCCC
Confidence 68999999999999999999999999999999999999999999999999988999999999999999999999655556
Q ss_pred cccCCcccccchHHHHHHHHHHHcCCCCChHHhhHHHHHHhhCCCccCHHHHHHHHHhHHHhhcCCCC
Q psy11446 82 AQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNINHHLAKNIRLYEDHIRRSPQL 149 (150)
Q Consensus 82 ~~~g~~sv~VPG~~~g~~~~~~~~gG~l~w~~ll~PaI~lA~~Gf~v~~~l~~~l~~~~~~l~~~p~~ 149 (150)
+..|+.+|+|||+++||+++|+|| |+|||++||+|||+|||+||+|++.+++.|+..++.|.++|++
T Consensus 168 ~~~G~~svaVPG~v~Gl~~ah~ry-GkLpwa~Ll~PAI~lAr~GfpVs~~la~~l~~~~~~l~~~p~~ 234 (639)
T PLN02180 168 KSLGALSMGVPGEIAGLYEAWKRY-GRLPWKPLFEPAIELARDGFVVHPYLGKAISSHAAMILKDPGL 234 (639)
T ss_pred CCCCcccccccchHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCcccCHHHHHHHHHHHHHHhcChhH
Confidence 778999999999999999999999 9999999999999999999999999999999998888888764
No 3
>PLN02198 glutathione gamma-glutamylcysteinyltransferase
Probab=100.00 E-value=8.9e-48 Score=343.37 Aligned_cols=146 Identities=34% Similarity=0.566 Sum_probs=138.4
Q ss_pred CchHHHHHHHHHHHcCCCHHHHHHHHHHHhHhhcCCCCCCccCeeeEEEECCCCcEEEEeeeccccccCCcchhcCCccc
Q psy11446 2 KLNVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAATLGMFHGNYKA 81 (150)
Q Consensus 2 ~~~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGGg~~~l~~~~~~~~~~~id~~~~aP~~~~~~~~~~~~~~ 81 (150)
+|++||++|++||++||||||||||+++||+||+||+||||||+|||||++ ++++++||++|+||..++.++|.+....
T Consensus 39 ~~p~as~aG~~iL~~GGNAvDAAVAa~~~l~VveP~~sGiGGggf~lv~~~-~~~~~~id~~~~AP~~a~~d~~~~~~~~ 117 (573)
T PLN02198 39 DDGRCSVIGMNVLREGGNAIDASVAAALCLGVVSPASSGIGGGAFTLIKLA-NGEEIAYDSRETAPLSATENMYGGNVEL 117 (573)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccccCCCCCceEEEEEEC-CCcEEEEeCcccccccCCHhHhcCCCcC
Confidence 689999999999999999999999999999999999999999999999996 5788999999999999999999765556
Q ss_pred cccCCcccccchHHHHHHHHHHHcCCCCChHHhhHHHHHHhhCCCccCHHHHHHHHHhHHHhhcCCCC
Q psy11446 82 AQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNINHHLAKNIRLYEDHIRRSPQL 149 (150)
Q Consensus 82 ~~~g~~sv~VPG~~~g~~~~~~~~gG~l~w~~ll~PaI~lA~~Gf~v~~~l~~~l~~~~~~l~~~p~~ 149 (150)
+..|+.+|+|||+++||+++|+|| |||||++||+|||+|||+||+|++.+++.|+..++.|+++|++
T Consensus 118 ~~~G~~sv~VPG~v~Gl~~~~~~~-G~L~w~~ll~PAI~lAr~Gf~v~~~la~~l~~~~~~l~~~p~~ 184 (573)
T PLN02198 118 KKKGALSVGVPGEVAGLFTAWKQH-GKLPWKRLVRPAEKLAAEGFKISKYLYMQMNATRSDILADKGL 184 (573)
T ss_pred CCCCccccccchHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHhcChhH
Confidence 788999999999999999999999 9999999999999999999999999999999999999888765
No 4
>TIGR00066 g_glut_trans gamma-glutamyltranspeptidase. Also called gamma-glutamyltranspeptidase (ggt). Some members of this family have antibiotic synthesis or resistance activities. In the case of a cephalosporin acylase from Pseudomonas sp., the enzyme was shown to retain some gamma-glutamyltranspeptidase activity. Other, more distantly related proteins have ggt-related activities and score below the trusted cutoff.
Probab=100.00 E-value=9e-48 Score=339.83 Aligned_cols=145 Identities=37% Similarity=0.540 Sum_probs=135.2
Q ss_pred CchHHHHHHHHHHHcCCCHHHHHHHHHHHhHhhcCCCCCCccCeeeEEEECCCCcEEEEeeeccccccCCcchhcCC--c
Q psy11446 2 KLNVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAATLGMFHGN--Y 79 (150)
Q Consensus 2 ~~~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGGg~~~l~~~~~~~~~~~id~~~~aP~~~~~~~~~~~--~ 79 (150)
+|++|+++|++||++||||||||||+++|++|||||+||||||+|||||+++++++++|||+++||..++.++|.+. .
T Consensus 6 ~~p~as~aG~~vL~~GGNAvDAAIAa~~~l~VveP~~sGiGGgg~~lv~~~~~~~~~~id~~~~aP~~a~~d~~~~~~~~ 85 (516)
T TIGR00066 6 LHALASEIGEDILKEGGNAFDAAVAVGLALAVVEPFMTGLGGGGFMLISGKKTKDTTAIDFRERAPAKATRDMFLDKSGN 85 (516)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccccCCCCCceEEEEEECCCCeEEEEeCcccchhhCCHHHHhhcCCC
Confidence 68999999999999999999999999999999999999999999999999988999999999999999999999632 1
Q ss_pred ccc---ccCCcccccchHHHHHHHHHHHcCCCCChHHhhHHHHHHhhCCCccCHHHHHHHHHhHHHhhcCC
Q psy11446 80 KAA---QTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNINHHLAKNIRLYEDHIRRSP 147 (150)
Q Consensus 80 ~~~---~~g~~sv~VPG~~~g~~~~~~~~gG~l~w~~ll~PaI~lA~~Gf~v~~~l~~~l~~~~~~l~~~p 147 (150)
..+ ..|+.+|+|||+++||+++|||| |||||++||+|||+|||+||+|++.+++.|+..++.|.++|
T Consensus 86 ~~~~~~~~G~~sv~VPG~v~g~~~~~~~~-G~L~w~~ll~PAI~lA~~Gf~v~~~l~~~~~~~~~~l~~~~ 155 (516)
T TIGR00066 86 PLPGKSLTGGLAIGVPGTVAGLEAALKKY-GTLPLKDLIEPAIKLARNGFPINEALADTLELYEEVLLTTK 155 (516)
T ss_pred cCCccccCCcccccccchHHHHHHHHHHH-ccCCHHHHHHHHHHHHHcCccCCHHHHHHHHHHHHHHhhCc
Confidence 222 34899999999999999999999 99999999999999999999999999999999888888776
No 5
>PRK09615 ggt gamma-glutamyltranspeptidase; Reviewed
Probab=100.00 E-value=2.3e-46 Score=334.73 Aligned_cols=146 Identities=32% Similarity=0.476 Sum_probs=133.5
Q ss_pred CchHHHHHHHHHHHcCCCHHHHHHHHHHHhHhhcCCCCCCccCeeeEEEECCCCcEEEEeeeccccccCCcchhcCCc--
Q psy11446 2 KLNVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAATLGMFHGNY-- 79 (150)
Q Consensus 2 ~~~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGGg~~~l~~~~~~~~~~~id~~~~aP~~~~~~~~~~~~-- 79 (150)
+|++||++|++||++||||||||||+++||+|||||+||||||+|||||++ ++++++|||+|+||..++.++|....
T Consensus 55 ~~plAs~aG~~VL~~GGNAvDAAVAaa~~l~VveP~~sGiGGggf~lv~~~-~~~~~~id~~~~AP~~a~~d~~~~~~g~ 133 (581)
T PRK09615 55 VDATATQVGVDILKQGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLLRTK-NGNTTAIDFREMAPAKATRDMFLDDQGN 133 (581)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCcccCEEEEEEEC-CCcEEEEEccccCcccCCHhhhhcccCC
Confidence 689999999999999999999999999999999999999999999999996 57889999999999999999995321
Q ss_pred c---ccccCCcccccchHHHHHHHHHHHcCCCCChHHhhHHHHHHhhCCCccCHHHHHHHHHh-HHHhhcCCCC
Q psy11446 80 K---AAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNINHHLAKNIRLY-EDHIRRSPQL 149 (150)
Q Consensus 80 ~---~~~~g~~sv~VPG~~~g~~~~~~~~gG~l~w~~ll~PaI~lA~~Gf~v~~~l~~~l~~~-~~~l~~~p~~ 149 (150)
. .+..|+++|+|||+++||+++|||| |+|||++||+|||+|||+||+|++.+++.|+.. .+.|.++|++
T Consensus 134 ~~p~~~~~G~~svaVPG~v~Gl~~~~~r~-G~L~w~~ll~PAI~lA~~Gf~v~~~la~~l~~~~~~~l~~~~~~ 206 (581)
T PRK09615 134 PDSKKSLTSHLASGTPGTVAGFSLALDKY-GTMPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENS 206 (581)
T ss_pred cCCcccccCCceeecCchHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCccCCHHHHHHHHHhHHHHhhcChhH
Confidence 1 2345999999999999999999999 999999999999999999999999999999987 6678777754
No 6
>KOG2410|consensus
Probab=100.00 E-value=8.2e-46 Score=327.25 Aligned_cols=147 Identities=47% Similarity=0.733 Sum_probs=141.9
Q ss_pred CchHHHHHHHHHHHcCCCHHHHHHHHHHHhHhhcCCCCCCccCeeeEEEECCCCcEEEEeeeccccccCCcchhcCCccc
Q psy11446 2 KLNVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAATLGMFHGNYKA 81 (150)
Q Consensus 2 ~~~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGGg~~~l~~~~~~~~~~~id~~~~aP~~~~~~~~~~~~~~ 81 (150)
|++.||++|++||++||||||||||++||++|++||++|||||+||+||++++++.++||+||+||.+++++||.++.+.
T Consensus 56 d~~~CS~IG~~iL~~GGnAVDAAIAa~lC~Gvvnp~SsGIGGG~~m~i~~~~~~~~~~idaREtAP~aa~~~mf~~~~~~ 135 (579)
T KOG2410|consen 56 DSARCSEIGRSILRKGGNAVDAAIAALLCLGVVNPHSSGIGGGGFMTIYNKNTGKAEVIDARETAPAAATEDMFVNNPEL 135 (579)
T ss_pred CchHHHHHHHHHHHhcccHHHHHHHHHHhcccccccccccccceEEEEecCCCCceeEeeHHhhhhhhhcHHHhcCCccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cccCCcccccchHHHHHHHHHHHcCCCCChHHhhHHHHHHhhCCCccCHHHHHHHHHhHHHhhcCCCC
Q psy11446 82 AQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNINHHLAKNIRLYEDHIRRSPQL 149 (150)
Q Consensus 82 ~~~g~~sv~VPG~~~g~~~~~~~~gG~l~w~~ll~PaI~lA~~Gf~v~~~l~~~l~~~~~~l~~~p~~ 149 (150)
...|++|++|||++.|++++||+| |+|||++||+|+|+|||+||+|++.|++.++..++.+..+|..
T Consensus 136 ~~~G~lsigVPGEi~Gl~~A~k~~-G~lpW~~L~~P~i~La~~Gf~vs~~L~~~l~~~~~~~~~~~~~ 202 (579)
T KOG2410|consen 136 SKVGALSIGVPGELAGLYEAHQKY-GRLPWKQLFQPTIKLAREGFPVSKYLARALRRKEPYILLDPGL 202 (579)
T ss_pred ceeccccccChHHHHHHHHHHHHh-CCCCHHHhhhhHHHHhhcCccccHHHHHHHhccccchhhcccc
Confidence 889999999999999999999999 9999999999999999999999999999999988888777654
No 7
>PF01019 G_glu_transpept: Gamma-glutamyltranspeptidase; InterPro: IPR000101 Gamma-glutamyltranspeptidase (2.3.2.2 from EC) (GGT) [] catalyzes the transfer of the gamma-glutamyl moiety of glutathione to an acceptor that may be an amino acid, a peptide or water (forming glutamate). GGT plays a key role in the gamma-glutamyl cycle, a pathway for the synthesis and degradation of glutathione and drug and xenobiotic detoxification []. In prokaryotes and eukaryotes, it is an enzyme that consists of two polypeptide chains, a heavy and a light subunit, processed from a single chain precursor by an autocatalytic cleavage. The active site of GGT is known to be located in the light subunit. The sequences of mammalian and bacterial GGT show a number of regions of high similarity []. Pseudomonas cephalosporin acylases (3.5.1 from EC) that convert 7-beta-(4-carboxybutanamido)-cephalosporanic acid (GL-7ACA) into 7-aminocephalosporanic acid (7ACA) and glutaric acid are evolutionary related to GGT and also show some GGT activity []. Like GGT, these GL-7ACA acylases, are also composed of two subunits. As an autocatalytic peptidase GGT belongs to MEROPS peptidase family T3 (gamma-glutamyltransferase family, clan PB(T)). The active site residue for members of this family and family T1 is C-terminal to the autolytic cleavage site. The type example is gamma-glutamyltransferase 1 from Escherichia coli. ; GO: 0003840 gamma-glutamyltransferase activity; PDB: 2DBX_A 2Z8K_D 2Z8I_B 2DBU_D 2E0X_B 2DBW_B 2E0W_B 2DG5_A 2E0Y_C 2Z8J_C ....
Probab=100.00 E-value=2.6e-45 Score=323.53 Aligned_cols=138 Identities=44% Similarity=0.723 Sum_probs=115.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHhHhhcCCCCCCccCeeeEEEECCCCcEEEEeeeccccccCCcchh--cCCccccccCCcc
Q psy11446 11 RNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAATLGMF--HGNYKAAQTGALA 88 (150)
Q Consensus 11 ~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGGg~~~l~~~~~~~~~~~id~~~~aP~~~~~~~~--~~~~~~~~~g~~s 88 (150)
++||++||||||||||+++|++||+||+||||||+|||||+++++++++|||++++|+.++.++| ......+..|+.+
T Consensus 1 m~vL~~GGNAvDAAvAaa~~l~Vv~P~~~giGG~~~~lv~~~~~~~~~~id~~~~aP~~~~~~~~~~~~~~~~~~~g~~s 80 (510)
T PF01019_consen 1 MDVLRKGGNAVDAAVAAALALGVVEPHSSGIGGGGFMLVYDAKTGKVHAIDGRGRAPAAATPEMFDFKGNPKIPERGGLS 80 (510)
T ss_dssp HHHHHTT--HHHHHHHHHHHHHHHSTTT-STTSEEEEEEEETTSEEEEEEEE--BB-TT--TTTTTSCBBSCHHTSSGGG
T ss_pred ChHHHhCCCHHHHHHHHHHHHhhcCcccCCcccCcEEEEEecCCcceeEecCcchhhhhCChhhhhccCCchhcccCccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999 3445678899999
Q ss_pred cccchHHHHHHHHHHHcCCCCChHHhhHHHHHHhhCCCccCHHHHHHHHHhHHHhhcCCCC
Q psy11446 89 AAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNINHHLAKNIRLYEDHIRRSPQL 149 (150)
Q Consensus 89 v~VPG~~~g~~~~~~~~gG~l~w~~ll~PaI~lA~~Gf~v~~~l~~~l~~~~~~l~~~p~~ 149 (150)
|+|||+++||+++|+|| |+|||++||+|||+|||+||+|++.+++.|+...+.|+++|++
T Consensus 81 v~vPG~~~g~~~~h~~~-G~lpw~~l~~PAI~lA~~Gf~v~~~la~~l~~~~~~l~~~~~~ 140 (510)
T PF01019_consen 81 VAVPGAVAGLEEAHERY-GTLPWADLLAPAIRLARDGFPVSPSLARALARNADKLRRDPGS 140 (510)
T ss_dssp -BB--HHHHHHHHHHHH--SS-HHHHHHHHHHHHHH-EE--HHHHHHHHHHHHHHTTSHHH
T ss_pred cCCCcHHHHHHHHHHHh-cchhHHHHHHHHHHHhcCCeEechhHHhHHHhHHHHHhhhhhH
Confidence 99999999999999999 9999999999999999999999999999999999999888754
No 8
>PLN02689 Bifunctional isoaspartyl peptidase/L-asparaginase
Probab=91.38 E-value=0.38 Score=40.98 Aligned_cols=40 Identities=18% Similarity=-0.031 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHhHhhcCCCCCCcc
Q psy11446 4 NVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGG 43 (150)
Q Consensus 4 ~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGG 43 (150)
..|.++|.++|++||+|.||.+++.-.|=--.-+..|.|+
T Consensus 32 ~~al~~g~~~L~~g~saldAV~~av~~lEd~p~fnAG~Gs 71 (318)
T PLN02689 32 RRCLDLGIAALRSSLPALDVVELVVRELENDPLFNAGRGS 71 (318)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCccCc
Confidence 5688999999999999999999986655543324444443
No 9
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=90.02 E-value=0.62 Score=38.71 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHhHhhcCCCCCCcc
Q psy11446 4 NVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGG 43 (150)
Q Consensus 4 ~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGG 43 (150)
..|.+.|.++|++||+|.||.+++.-.+=--.-++.|.|+
T Consensus 26 ~~a~~~~~~~L~~g~saldAv~~av~~lEd~p~fnaG~Gs 65 (261)
T cd04702 26 KAAAEAGYKVLEQGGSALDAVEAAVRVMEDDPIFNAGYGS 65 (261)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCccCc
Confidence 4678899999999999999999985555433334555554
No 10
>PRK10226 isoaspartyl peptidase; Provisional
Probab=90.01 E-value=0.58 Score=39.82 Aligned_cols=39 Identities=26% Similarity=0.420 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHhHhhcC-CCCCCcc
Q psy11446 4 NVGLSTCRNILRKGGNAVDAAITALLCDGLSCP-QSMGLGG 43 (150)
Q Consensus 4 ~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P-~~~giGG 43 (150)
..|.++|.++|++||+|.||.+++.-.|=- .| +++|.|+
T Consensus 33 ~~al~~g~~~L~~g~saldAV~~av~~lEd-~p~fNaG~Gs 72 (313)
T PRK10226 33 SAIVETGQKMLEAGESALDVVTEAVRLLEE-CPLFNAGIGA 72 (313)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCcccCC
Confidence 568899999999999999999998766654 45 5556554
No 11
>cd04701 Asparaginase_2 L-Asparaginase type 2. L-Asparaginase hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzyme undergoes an autoproteolytic cleavage into alpha and beta subunits to expose a threonine residue which becomes the N-terminal residue of the beta subunit. The threonine residue plays a central role in hydrolase activity. Some asparaginases can also hydrolyze L-glutamine and are termed glutaminase-asparaginase. This is a member of the Ntn-hydrolase superfamily.
Probab=88.05 E-value=1 Score=37.36 Aligned_cols=40 Identities=28% Similarity=0.310 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHhHhhcCCCCCCcc
Q psy11446 4 NVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGG 43 (150)
Q Consensus 4 ~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGG 43 (150)
..|.+.|.++|++|++|.||.+++.-+|=--.-+.+|.|+
T Consensus 29 ~~al~~~~~~L~~g~saldAv~~av~~lEd~p~fNaG~Gs 68 (260)
T cd04701 29 RAALEAGHAVLAAGGSALDAVVAAVRLLEDSPLFNAGKGA 68 (260)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCccCc
Confidence 4577889999999999999999976555433335556554
No 12
>PF01112 Asparaginase_2: Asparaginase; InterPro: IPR000246 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Threonine peptidases are characterised by a threonine nucleophile at the N terminus of the mature enzyme. The threonine peptidases belong to clan PB or are unassigned, clan T-. The type example for this clan is the archaean proteasome beta component of Thermoplasma acidophilum. This group of sequences have a signature that places them in MEROPS peptidase family T2 (clan PB(T)). The glycosylasparaginases (3.5.1.26 from EC) are threonine peptidases. Also in this family is L-asparaginase (3.5.1.1 from EC), which catalyses the following reaction: L-asparagine + H2O = L-aspartate + NH3 Glycosylasparaginase catalyses: N4-(beta-N-acetyl-D-glucosaminyl)-L-asparagine + H(2)O = N-acetyl-beta-glucosaminylamine + L-aspartate cleaving the GlcNAc-Asn bond that links oligosaccharides to asparagine in N-linked glycoproteins. The enzyme is composed of two non-identical alpha/beta subunits joined by strong non-covalent forces and has one glycosylation site located in the alpha subunit [] and plays a major role in the degradation of glycoproteins.; GO: 0016787 hydrolase activity; PDB: 1APY_D 1APZ_C 2GEZ_E 2GL9_B 2GAC_D 2GAW_C 1AYY_A 1P4V_C 9GAF_A 1P4K_A ....
Probab=87.57 E-value=1.2 Score=37.95 Aligned_cols=41 Identities=27% Similarity=0.265 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHhHhhcCCCCCCccC
Q psy11446 4 NVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGGG 44 (150)
Q Consensus 4 ~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGGg 44 (150)
..|.+.|.++|++|++|.||.+++.-.|==-.-+++|.|+-
T Consensus 31 ~~a~~~~~~~L~~g~~aldAV~~Av~~LEd~p~fNaG~Gs~ 71 (319)
T PF01112_consen 31 RDALEAGYEVLKKGGSALDAVEAAVRVLEDDPLFNAGYGSV 71 (319)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTTSSSSTTSS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCccCCCC
Confidence 46889999999999999999997766555444466676654
No 13
>cd04514 Taspase1_like Taspase1_like domains; Taspase1 catalyzes the cleavage of the mix lineage leukemia (MLL) nuclear protein and transcription factor TFIIA. Taspase1 is a threonine aspartase, a member of the Ntn hydrolase superfamily and the type 2 asparaginase family. A threonine residue acts as the active site nucleophile in both endopeptidease and protease activities to cleave polypeptide substrates after an aspartate residue. The Taspase1 proenzyme undergoes autoproteolysis into alpha and beta subunits. The N-terminal residue of the beta subunit is a threonine which is the active catalytic residue. The active enzyme is a heterotetramer.
Probab=86.27 E-value=1.5 Score=37.24 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHhHhhcCCCCCCccC
Q psy11446 4 NVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGGG 44 (150)
Q Consensus 4 ~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGGg 44 (150)
..|.+.|.++|++|++|.||.+++.-+|=--.-.++|.|+-
T Consensus 25 ~~al~~~~~~L~~g~saldAv~~av~~lEd~p~fNaG~Gs~ 65 (303)
T cd04514 25 KRACQKAIELLRAGGSALDAVVAAIQVLEDSPLTNAGYGSN 65 (303)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCccCcC
Confidence 46788999999999999999998876665444466666653
No 14
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=86.00 E-value=1.2 Score=37.15 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHhHhhcCC--CCCCcc
Q psy11446 4 NVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQ--SMGLGG 43 (150)
Q Consensus 4 ~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~--~~giGG 43 (150)
..|.++|.++|++||+|.||.+++.-.|=- .|. +.|.|+
T Consensus 9 ~~a~~~g~~~L~~G~salDAv~~av~~lEd-~p~f~naG~Gs 49 (263)
T cd04513 9 RNATDAAWEVLKAGGSALDAVEEGCSLCED-DPCDKSVGYGG 49 (263)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CcCcCCcccCc
Confidence 357889999999999999999998665553 464 246664
No 15
>PLN02937 Putative isoaspartyl peptidase/L-asparaginase
Probab=85.54 E-value=1.6 Score=38.53 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHcC-CCHHHHHHHHHHHhHhhcCCCCCCccC
Q psy11446 4 NVGLSTCRNILRKG-GNAVDAAITALLCDGLSCPQSMGLGGG 44 (150)
Q Consensus 4 ~~as~aG~~iL~~G-GNAvDAAvA~~~~l~Vv~P~~~giGGg 44 (150)
..|.++|.++|++| |+|+||.+++.-.|=--.=++.|.|+-
T Consensus 36 ~~A~~aa~~~L~~g~gsalDAV~aAv~~LEd~p~fNAG~Gs~ 77 (414)
T PLN02937 36 RRACLAAAAILRQGSGGCIDAVSAAIQVLEDDPSTNAGRGSN 77 (414)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCCccCcC
Confidence 46788999999999 999999998755444322245566653
No 16
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=83.08 E-value=2.6 Score=34.82 Aligned_cols=40 Identities=28% Similarity=0.250 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHhHhhcCCCCCCcc
Q psy11446 4 NVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGG 43 (150)
Q Consensus 4 ~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGG 43 (150)
..|.+.+.++|++|++|.||.+++.-.|=--.-+.+|-|+
T Consensus 23 ~~a~~~~~~~l~~g~saldAv~~av~~lEd~p~~NaG~Gs 62 (248)
T cd04512 23 RRAAQEGWKVLQKGGSALDAVEAAVRLLEDSPLFNAGYGS 62 (248)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCccCc
Confidence 4577899999999999999999987655543335556554
No 17
>COG1446 Asparaginase [Amino acid transport and metabolism]
Probab=68.54 E-value=6.7 Score=33.39 Aligned_cols=39 Identities=28% Similarity=0.468 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHHcCCCHHHHHHHHHHHhHhhcC-CCCCCc
Q psy11446 3 LNVGLSTCRNILRKGGNAVDAAITALLCDGLSCP-QSMGLG 42 (150)
Q Consensus 3 ~~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P-~~~giG 42 (150)
+..+.++|..+|..||+|.||++.+.-.|= -+| ++.|.|
T Consensus 27 l~~a~~ag~~~l~~g~sALDAVv~Av~~mE-d~p~fNAG~G 66 (307)
T COG1446 27 LSAAVEAGYQLLSAGGSALDAVVEAVRVLE-DSPLFNAGTG 66 (307)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-hCCCccCccc
Confidence 345677888999999999999999866555 344 444554
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=58.97 E-value=21 Score=33.11 Aligned_cols=67 Identities=16% Similarity=0.282 Sum_probs=41.0
Q ss_pred cCee-eEEEECCCCcEEEEeeeccccccCCcchhcCCccccccCC-cccccchHHHHHHHHHHHcCCCCChHHhhHH
Q psy11446 43 GGFL-MTLYNKTTGKAYAINAREKAPAAATLGMFHGNYKAAQTGA-LAAAIPAEVLGYWTVYHRFGGGVPWRDLFEE 117 (150)
Q Consensus 43 Gg~~-~l~~~~~~~~~~~id~~~~aP~~~~~~~~~~~~~~~~~g~-~sv~VPG~~~g~~~~~~~~gG~l~w~~ll~P 117 (150)
|+.| =+-|+. .|.-...|+||-|-..-.+ |. |..+- .-+..==.-+-||-++|+||-+++|.||+-=
T Consensus 95 GplfIRmAWHs-AGTYRi~DGRGGa~~G~qR--Fa-----PlnSWPDN~nLDKarRLLWPIKkKYG~kiSWaDL~iL 163 (730)
T COG0376 95 GPLFIRMAWHS-AGTYRIGDGRGGAGGGQQR--FA-----PLNSWPDNANLDKARRLLWPIKKKYGRKISWADLIIL 163 (730)
T ss_pred ccceeeeeecc-cCceecccCCCCCCCCcee--cc-----cccCCCcccchHHHHHHhhhHhHhhcccccHhHhhhh
Confidence 4444 345666 4778888999977654211 11 11111 1233334567899999999339999999753
No 19
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=58.41 E-value=26 Score=29.35 Aligned_cols=84 Identities=21% Similarity=0.294 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHhH----------hhcCCCCCCccCe--eeEEEECCCCcEEEEeeeccccccCCcchhcCCcccccc
Q psy11446 17 GGNAVDAAITALLCDG----------LSCPQSMGLGGGF--LMTLYNKTTGKAYAINAREKAPAAATLGMFHGNYKAAQT 84 (150)
Q Consensus 17 GGNAvDAAvA~~~~l~----------Vv~P~~~giGGg~--~~l~~~~~~~~~~~id~~~~aP~~~~~~~~~~~~~~~~~ 84 (150)
||.++|+|=++++... +.-|..+|-|.-. +.++|+.+++.-..+.....-|..+-.| +.....
T Consensus 87 GGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTtagtgse~t~~avi~~~~~~~k~~~~~~~~~p~~~i~D-----p~l~~~ 161 (332)
T cd08180 87 GGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTTSGTGSEVTSFAVITDPETGVKYPLVDDELLPDIAILD-----PELVKT 161 (332)
T ss_pred CchHHHHHHHHHHHHhCCCCCCCCCEEEeCCCCcchHhhCCeEEEEecCCCeeEEeeCCCccCCEEEEC-----chhhcc
Confidence 8899999976665443 5567777777644 7788988766555665444555443222 111122
Q ss_pred CCcccccchHHHHHHHHHHHc
Q psy11446 85 GALAAAIPAEVLGYWTVYHRF 105 (150)
Q Consensus 85 g~~sv~VPG~~~g~~~~~~~~ 105 (150)
-+..+..-+.++++....|.|
T Consensus 162 ~P~~~~~~~~~Dal~h~~E~~ 182 (332)
T cd08180 162 VPPAVTADTGMDVLTHALEAY 182 (332)
T ss_pred CCHHHHHHhHHHHHHHHHHHH
Confidence 344566667778888777766
No 20
>cd04703 Asparaginase_2_like A subfamily of the L-Asparaginase type 2-like enzymes. The wider family, a member of the Ntn-hydrolase superfamily, includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=51.68 E-value=31 Score=28.46 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHhHhhcCCCCCCcc
Q psy11446 4 NVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGG 43 (150)
Q Consensus 4 ~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGG 43 (150)
..|.+.|.++|++ +|.||.+++.-++=--.-+.+|.|+
T Consensus 21 ~~a~~~a~~~L~~--saldAv~~av~~lEd~~~~NaG~Gs 58 (246)
T cd04703 21 QGAAEAATAALSN--DALDAVTAAVRALESDPAFNAGTGA 58 (246)
T ss_pred HHHHHHHHHHHhh--cHHHHHHHHHHHHhcCCCCCCccCc
Confidence 4578889999999 9999999986655543334445443
No 21
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=47.31 E-value=51 Score=27.82 Aligned_cols=84 Identities=20% Similarity=0.282 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHhH----------------------hhcCCCCCCccC--eeeEEEECCCCcEEEEeeeccccccCCc
Q psy11446 17 GGNAVDAAITALLCDG----------------------LSCPQSMGLGGG--FLMTLYNKTTGKAYAINAREKAPAAATL 72 (150)
Q Consensus 17 GGNAvDAAvA~~~~l~----------------------Vv~P~~~giGGg--~~~l~~~~~~~~~~~id~~~~aP~~~~~ 72 (150)
||.++|+|=++++++. +.-|..+|-|-- .+.++||..+++...+.....-|..+-.
T Consensus 87 GGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtGsE~t~~avi~d~~~~~k~~~~~~~~~P~~~i~ 166 (366)
T PF00465_consen 87 GGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTGSEVTPYAVIYDEEGGRKLSIRSPKLYPDAAIL 166 (366)
T ss_dssp SHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSSGCCSSEEEEEETTTTEEEEEEEGGGS-SEEEE
T ss_pred CCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCccccccccccccccccccceeccccCcccCcceeEe
Confidence 8999999999999887 223444444432 4678898877777677777767765433
Q ss_pred chhcCCccccccCCcccccchHHHHHHHHHHHc
Q psy11446 73 GMFHGNYKAAQTGALAAAIPAEVLGYWTVYHRF 105 (150)
Q Consensus 73 ~~~~~~~~~~~~g~~sv~VPG~~~g~~~~~~~~ 105 (150)
|. .....=+..+.+-+.++++..+.+.|
T Consensus 167 Dp-----~l~~~lP~~~~~~~~~dal~haiE~~ 194 (366)
T PF00465_consen 167 DP-----ELTATLPPRLTASGGLDALAHAIEAY 194 (366)
T ss_dssp EG-----GGGTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred cH-----HhhcCCCHHHHhhhHHHHHHHHHHHH
Confidence 21 11223345788889999999999987
No 22
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=42.72 E-value=71 Score=27.26 Aligned_cols=84 Identities=10% Similarity=0.054 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHhH---------------------hhcCCCCCCccCe--eeEEEECCCCcEEEEeeeccccccCCcc
Q psy11446 17 GGNAVDAAITALLCDG---------------------LSCPQSMGLGGGF--LMTLYNKTTGKAYAINAREKAPAAATLG 73 (150)
Q Consensus 17 GGNAvDAAvA~~~~l~---------------------Vv~P~~~giGGg~--~~l~~~~~~~~~~~id~~~~aP~~~~~~ 73 (150)
||.++|+|=++++.+. ++-|..+|-|.-. +.++|+..++....+......|..+-.|
T Consensus 94 GGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~t~~avi~~~~~~~K~~~~~~~~~P~~~ivD 173 (377)
T cd08176 94 GGSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEVTINYVITDEERKVKMVIVDPNDIPIVAVND 173 (377)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhccCCcEEEEEcCCCceeEEeCccccCCEEEEC
Confidence 8999999977765421 3445556666554 5777887655444554455556553222
Q ss_pred hhcCCccccccCCcccccchHHHHHHHHHHHc
Q psy11446 74 MFHGNYKAAQTGALAAAIPAEVLGYWTVYHRF 105 (150)
Q Consensus 74 ~~~~~~~~~~~g~~sv~VPG~~~g~~~~~~~~ 105 (150)
+.....-|..++.-|.++++..+.|.|
T Consensus 174 -----p~l~~~~P~~~~a~~~~Dal~h~~E~~ 200 (377)
T cd08176 174 -----PELMVGMPPGLTAATGMDALTHAIEAY 200 (377)
T ss_pred -----hHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 112223455677888888888888866
No 23
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=40.28 E-value=69 Score=27.14 Aligned_cols=84 Identities=14% Similarity=0.195 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHh-------------------------HhhcCCCCCCccC--eeeEEEECCCCcEEEEeeecccccc
Q psy11446 17 GGNAVDAAITALLCD-------------------------GLSCPQSMGLGGG--FLMTLYNKTTGKAYAINAREKAPAA 69 (150)
Q Consensus 17 GGNAvDAAvA~~~~l-------------------------~Vv~P~~~giGGg--~~~l~~~~~~~~~~~id~~~~aP~~ 69 (150)
||.++|+|=++++.+ -++-|..+|-|+- .+.+++|.+++.-..+......|..
T Consensus 86 GGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~t~~avi~~~~~~~K~~~~~~~~~P~~ 165 (367)
T cd08182 86 GGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAGTGSEVTPFATVWDGKKGIKYSLAGPALYPDT 165 (367)
T ss_pred CcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCCchhhhCCEEEEEECCCCeeeeecCCcccCCE
Confidence 899999996666543 2344566666653 3567788876666667655556654
Q ss_pred CCcchhcCCccccccCCcccccchHHHHHHHHHHHc
Q psy11446 70 ATLGMFHGNYKAAQTGALAAAIPAEVLGYWTVYHRF 105 (150)
Q Consensus 70 ~~~~~~~~~~~~~~~g~~sv~VPG~~~g~~~~~~~~ 105 (150)
+-.| +.....-|..+..-|.++.+..+.+.|
T Consensus 166 ~i~D-----p~l~~t~P~~~~a~~~~Dal~h~~E~~ 196 (367)
T cd08182 166 AIVD-----PELTLSLPPYQTASTGLDALAHAIESY 196 (367)
T ss_pred EEEC-----hHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3222 112223445677778888888887766
No 24
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=39.11 E-value=76 Score=26.81 Aligned_cols=84 Identities=21% Similarity=0.291 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHhH---------------------hhcCCCCCCccC--eeeEEEECCCCcEEEEeeeccccccCCcc
Q psy11446 17 GGNAVDAAITALLCDG---------------------LSCPQSMGLGGG--FLMTLYNKTTGKAYAINAREKAPAAATLG 73 (150)
Q Consensus 17 GGNAvDAAvA~~~~l~---------------------Vv~P~~~giGGg--~~~l~~~~~~~~~~~id~~~~aP~~~~~~ 73 (150)
||.++|.|=++++.+. ++-|...|-|.- .+.++||.+.+.-..++.....|..+-.|
T Consensus 89 GGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtgse~t~~avi~d~~~~~K~~~~~~~~~P~~~i~D 168 (370)
T cd08551 89 GGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTGSEVTPFAVITDEETGEKYGIASPELLPDVAILD 168 (370)
T ss_pred CchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcchhhcCCeEEEEECCCCeeEEEeCCCccCCEEEEC
Confidence 8899999976666551 333444444432 34667888666666777666666554322
Q ss_pred hhcCCccccccCCcccccchHHHHHHHHHHHc
Q psy11446 74 MFHGNYKAAQTGALAAAIPAEVLGYWTVYHRF 105 (150)
Q Consensus 74 ~~~~~~~~~~~g~~sv~VPG~~~g~~~~~~~~ 105 (150)
+.....-+..+..-|.++++..+.|.|
T Consensus 169 -----p~l~~~~P~~~~~a~~~Dal~h~~E~~ 195 (370)
T cd08551 169 -----PELTYTLPPALTAATGMDALTHAIEAY 195 (370)
T ss_pred -----hHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 112233456788888899988888866
No 25
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=38.77 E-value=83 Score=26.68 Aligned_cols=84 Identities=20% Similarity=0.265 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHhH-------------------------hhcCCCCCCcc--CeeeEEEECCCCcEEEEeeecccccc
Q psy11446 17 GGNAVDAAITALLCDG-------------------------LSCPQSMGLGG--GFLMTLYNKTTGKAYAINAREKAPAA 69 (150)
Q Consensus 17 GGNAvDAAvA~~~~l~-------------------------Vv~P~~~giGG--g~~~l~~~~~~~~~~~id~~~~aP~~ 69 (150)
||.++|+|=++++.+. ++-|..+|-|. ..+.++|+.+++.-..+.....-|..
T Consensus 90 GGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~t~~avi~~~~~~~K~~~~~~~~~P~~ 169 (370)
T cd08192 90 GGSALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAGTGSEVGRAAVITDEDTGRKLIIFSPHLLPKA 169 (370)
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCchhhhhCCceEEEeCCCCeeEEeeCCcccCCE
Confidence 8899999977766543 44555555543 23456788766655666655555654
Q ss_pred CCcchhcCCccccccCCcccccchHHHHHHHHHHHc
Q psy11446 70 ATLGMFHGNYKAAQTGALAAAIPAEVLGYWTVYHRF 105 (150)
Q Consensus 70 ~~~~~~~~~~~~~~~g~~sv~VPG~~~g~~~~~~~~ 105 (150)
+-.| +.....-|..+..-|.++++..+.|.|
T Consensus 170 ~i~D-----p~l~~~~P~~~~a~~~~Dal~h~~E~~ 200 (370)
T cd08192 170 AICD-----PELTLGLPAGLTAATGMDALTHCIEAY 200 (370)
T ss_pred EEEC-----hhhhhCCCHHHHHHHHHHHHHHHHHHH
Confidence 3222 111223345567777778887777766
No 26
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=38.40 E-value=86 Score=26.76 Aligned_cols=84 Identities=14% Similarity=0.190 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHhH---------------------hhcCCCCCCcc--CeeeEEEECCCCcEEEEeeeccccccCCcc
Q psy11446 17 GGNAVDAAITALLCDG---------------------LSCPQSMGLGG--GFLMTLYNKTTGKAYAINAREKAPAAATLG 73 (150)
Q Consensus 17 GGNAvDAAvA~~~~l~---------------------Vv~P~~~giGG--g~~~l~~~~~~~~~~~id~~~~aP~~~~~~ 73 (150)
||.++|+|=++++++. +.-|..+|-|. ..+.+++|..++.-..++....-|..+-.|
T Consensus 94 GGsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~gTgSE~t~~avi~d~~~~~K~~i~~~~~~P~~vi~D 173 (377)
T cd08188 94 GGSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTAGSGADVSQFAIITDTERKVKMAIISKSLVPDIALID 173 (377)
T ss_pred CchHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCccccccCCeEEEEeCCCCeeEEEeCccccCCEEEEC
Confidence 8999999966666442 44455555553 456678887666555666554455543222
Q ss_pred hhcCCccccccCCcccccchHHHHHHHHHHHc
Q psy11446 74 MFHGNYKAAQTGALAAAIPAEVLGYWTVYHRF 105 (150)
Q Consensus 74 ~~~~~~~~~~~g~~sv~VPG~~~g~~~~~~~~ 105 (150)
+.....-|..+..=|.++++..+.|-|
T Consensus 174 -----p~l~~~lP~~~~~~~~~Dal~haiE~~ 200 (377)
T cd08188 174 -----PETLTTMPPELTAATGLDALTHAIEAY 200 (377)
T ss_pred -----HHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 111222344566677777877777766
No 27
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=37.66 E-value=97 Score=26.38 Aligned_cols=84 Identities=18% Similarity=0.230 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHhH----------------------hhcCCCCCCccC--eeeEEEECCCCcEEEEeeeccccccCCc
Q psy11446 17 GGNAVDAAITALLCDG----------------------LSCPQSMGLGGG--FLMTLYNKTTGKAYAINAREKAPAAATL 72 (150)
Q Consensus 17 GGNAvDAAvA~~~~l~----------------------Vv~P~~~giGGg--~~~l~~~~~~~~~~~id~~~~aP~~~~~ 72 (150)
||.++|+|=++++.+. ++-|..+|=|.- .+.++||.+.+.-..++....-|..+-.
T Consensus 92 GGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGsE~t~~avi~d~~~~~K~~~~~~~~~P~~~i~ 171 (374)
T cd08189 92 GGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTGSEVTIAAVISDPETHEKYAISDPRLLPKAAAL 171 (374)
T ss_pred CccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCccccccCCeEEEEecCCCeeEEEeCCCccCCEEEE
Confidence 8899999977776653 445555555543 3567788766655566655555654322
Q ss_pred chhcCCccccccCCcccccchHHHHHHHHHHHc
Q psy11446 73 GMFHGNYKAAQTGALAAAIPAEVLGYWTVYHRF 105 (150)
Q Consensus 73 ~~~~~~~~~~~~g~~sv~VPG~~~g~~~~~~~~ 105 (150)
| +.....-+..+..=+.++++..+.|.|
T Consensus 172 D-----p~l~~t~P~~~~~a~g~Dal~h~iE~~ 199 (374)
T cd08189 172 D-----PRLTLGLPPHITAATGMDALTHAVEAY 199 (374)
T ss_pred C-----hHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 2 112223345566667777777777766
No 28
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.44 E-value=98 Score=18.63 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHcCCCCChHHhhHHHH-HHhhCCCccCHHHHHHHH
Q psy11446 93 AEVLGYWTVYHRFGGGVPWRDLFEEPI-ALALNGVNINHHLAKNIR 137 (150)
Q Consensus 93 G~~~g~~~~~~~~gG~l~w~~ll~PaI-~lA~~Gf~v~~~l~~~l~ 137 (150)
|++-=+..+.++ |-++ -+.|++ ++-+.||.+++.+.+.+-
T Consensus 4 GTlGiL~~Ak~~--GlI~---~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 4 GTLGILLLAKRR--GLIS---EVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred ehHHHHHHHHHc--CChh---hHHHHHHHHHHcCcccCHHHHHHHH
Confidence 555555566665 8888 334444 567889999999877653
No 29
>PF15116 CD52: CAMPATH-1 antigen
Probab=34.31 E-value=27 Score=21.34 Aligned_cols=15 Identities=33% Similarity=0.676 Sum_probs=12.1
Q ss_pred cCCCCCCccCeeeEE
Q psy11446 35 CPQSMGLGGGFLMTL 49 (150)
Q Consensus 35 ~P~~~giGGg~~~l~ 49 (150)
-|-.+.+|||.|+++
T Consensus 18 apA~s~lggg~~LfF 32 (44)
T PF15116_consen 18 APALSSLGGGSFLFF 32 (44)
T ss_pred CccccccCCceEEee
Confidence 467788999999775
No 30
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=33.69 E-value=1e+02 Score=26.09 Aligned_cols=84 Identities=19% Similarity=0.175 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHhH--------------------hhcCCCCCCcc--CeeeEEEECCCCcEEEEeeeccccccCCcch
Q psy11446 17 GGNAVDAAITALLCDG--------------------LSCPQSMGLGG--GFLMTLYNKTTGKAYAINAREKAPAAATLGM 74 (150)
Q Consensus 17 GGNAvDAAvA~~~~l~--------------------Vv~P~~~giGG--g~~~l~~~~~~~~~~~id~~~~aP~~~~~~~ 74 (150)
||.++|+|=++++++. ++-|..+|-|. -.+.++||.+++.-..|......|..+-.|
T Consensus 92 GGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagTGsE~t~~avi~d~~~~~K~~i~~~~~~P~~~i~D- 170 (357)
T cd08181 92 GGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTAGTGSEVTQYSVLTDHEEGTKKGFGHDLIFPKLAFLD- 170 (357)
T ss_pred CchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCCcchhhhCCeEEEEECCCCeeeeccCCccccCEEEEC-
Confidence 9999999966665431 44455555553 334667887666555665555555443222
Q ss_pred hcCCccccccCCcccccchHHHHHHHHHHHc
Q psy11446 75 FHGNYKAAQTGALAAAIPAEVLGYWTVYHRF 105 (150)
Q Consensus 75 ~~~~~~~~~~g~~sv~VPG~~~g~~~~~~~~ 105 (150)
+.....-|..++.-|.++++..+.+.|
T Consensus 171 ----p~l~~~~P~~~~a~~g~Dal~ha~E~~ 197 (357)
T cd08181 171 ----PKYTLTLPKEVTINTALDALSHAVEGY 197 (357)
T ss_pred ----hHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 122233456778888889999888876
No 31
>PF15505 DUF4648: Domain of unknown function (DUF4648)
Probab=33.16 E-value=34 Score=26.48 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=22.3
Q ss_pred ccccCCcccccchHHHHHHHHHHHc
Q psy11446 81 AAQTGALAAAIPAEVLGYWTVYHRF 105 (150)
Q Consensus 81 ~~~~g~~sv~VPG~~~g~~~~~~~~ 105 (150)
.|.+|..+.+||+.++-||.-|++-
T Consensus 132 lPLTG~~scG~P~iLRKMW~rHKKK 156 (170)
T PF15505_consen 132 LPLTGSASCGVPSILRKMWMRHKKK 156 (170)
T ss_pred ccccCCcccCccHHHHHHHHhhhhh
Confidence 5678999999999999999999864
No 32
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=32.29 E-value=1.3e+02 Score=25.56 Aligned_cols=84 Identities=12% Similarity=0.145 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHhH-------------------------hhcCCCCCCccC--eeeEEEECCCCcEEEEeeecccccc
Q psy11446 17 GGNAVDAAITALLCDG-------------------------LSCPQSMGLGGG--FLMTLYNKTTGKAYAINAREKAPAA 69 (150)
Q Consensus 17 GGNAvDAAvA~~~~l~-------------------------Vv~P~~~giGGg--~~~l~~~~~~~~~~~id~~~~aP~~ 69 (150)
||.++|+|=++++++. ++-|..+|-|.- .+.++++.+.+.-..+......|..
T Consensus 84 GGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGSE~t~~avi~~~~~~~K~~~~~~~~~P~~ 163 (374)
T cd08183 84 GGSVIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTTAGTGSEVTKNAVISVPGAGFKVSLRHPRMLPDV 163 (374)
T ss_pred CchHHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCCCchhHHhCCeEEEEecCCCeeEEeecccccCCE
Confidence 9999999966655431 233455555442 3457788766655666655555654
Q ss_pred CCcchhcCCccccccCCcccccchHHHHHHHHHHHc
Q psy11446 70 ATLGMFHGNYKAAQTGALAAAIPAEVLGYWTVYHRF 105 (150)
Q Consensus 70 ~~~~~~~~~~~~~~~g~~sv~VPG~~~g~~~~~~~~ 105 (150)
+-.| +.....-|..++.=+.++++..+.+.|
T Consensus 164 ai~D-----p~l~~~lP~~~~aatg~Dal~ha~E~~ 194 (374)
T cd08183 164 AIVD-----PELTLSCPRSVTAASGLDALTQLLEPY 194 (374)
T ss_pred EEEC-----hHHhcCCChhhHHHHHHHHHHHHHHHH
Confidence 3222 111122345566777778888888766
No 33
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=31.78 E-value=38 Score=21.91 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=16.0
Q ss_pred HHhhHHHHHHhhCCCccCH
Q psy11446 112 RDLFEEPIALALNGVNINH 130 (150)
Q Consensus 112 ~~ll~PaI~lA~~Gf~v~~ 130 (150)
..-++++|+.++.|-||+-
T Consensus 34 ~K~~~~~I~~~~aG~pVd~ 52 (59)
T smart00685 34 AKQFDDAIKAARAGRPVDL 52 (59)
T ss_pred HhhHHHHHHHHHCCCCCCh
Confidence 4457899999999999974
No 34
>PF09691 PulS_OutS: Bacterial chaperone lipoprotein (PulS_OutS); InterPro: IPR019114 This family comprises lipoproteins from gamma proteobacterial species: pullulanase secretion protein PulS protein of Klebsiella pneumoniae (P20440 from SWISSPROT), the lipoprotein OutS protein of Erwinia chrysanthemi (Q01567 from SWISSPROT) and the functionally uncharacterised type II secretion protein EtpO (Q7BSV3 from SWISSPROT) from Escherichia coli O157:H7. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family. In addition to the PulS/OutS proteins this entry also includes other functionally uncharacterised proteins, such as YacC from Escherischia coli (P0AA95 from SWISSPROT).; PDB: 3SOL_A 3UYM_A 3UTK_A 4A56_A.
Probab=31.51 E-value=1.9e+02 Score=20.94 Aligned_cols=47 Identities=11% Similarity=0.184 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHcC-CCCChH-HhhHHHHHHhh-CCCccCHHHHHHHHHh
Q psy11446 93 AEVLGYWTVYHRFG-GGVPWR-DLFEEPIALAL-NGVNINHHLAKNIRLY 139 (150)
Q Consensus 93 G~~~g~~~~~~~~g-G~l~w~-~ll~PaI~lA~-~Gf~v~~~l~~~l~~~ 139 (150)
-.++|...+.++.| -.||=. +|..-++.+|. +||.++......|.+.
T Consensus 28 sL~A~~~yLK~~C~~~dlP~~~~I~~~a~~~A~~~gWd~~~~~~~~l~~~ 77 (109)
T PF09691_consen 28 SLTAGARYLKNDCGRSDLPDEQEIIRAAVIFAQQRGWDTSNYNYQQLSQL 77 (109)
T ss_dssp HHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHTT--CGG--HHHHHHH
T ss_pred HHHHHHHHHHhcCCCccCCCHHHHHHHHHHHHHHcCCCcchhHHHHHHHH
Confidence 46788999999985 557754 69999999998 9999998777777544
No 35
>KOG1592|consensus
Probab=31.46 E-value=80 Score=27.15 Aligned_cols=39 Identities=23% Similarity=0.035 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhHhhcCCCCCCcc
Q psy11446 5 VGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGG 43 (150)
Q Consensus 5 ~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGG 43 (150)
.|-..+...|+.|+.|+||+.++.--|=--.-.++|.|-
T Consensus 29 ~a~~~a~~~l~~~~sa~DaveaAi~~LEd~p~fNAG~GS 67 (326)
T KOG1592|consen 29 RACFLAILALKSGFSALDAVEAALRELEDDPKFNAGRGS 67 (326)
T ss_pred HHHHhhhHHhhcCCccHHHHHHHHHHHhcCCccCCCccc
Confidence 456677888899999999999987666654456666663
No 36
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=29.82 E-value=1.5e+02 Score=25.29 Aligned_cols=84 Identities=10% Similarity=0.180 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHhH-----------------------hhcCCCCCCcc--CeeeEEEECCCCcEEEEeeeccccccCC
Q psy11446 17 GGNAVDAAITALLCDG-----------------------LSCPQSMGLGG--GFLMTLYNKTTGKAYAINAREKAPAAAT 71 (150)
Q Consensus 17 GGNAvDAAvA~~~~l~-----------------------Vv~P~~~giGG--g~~~l~~~~~~~~~~~id~~~~aP~~~~ 71 (150)
||.++|+|=+++++.. ++-|..+|-|+ ..+.++|+.++++-..+.....-|..+-
T Consensus 95 GGSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTGse~t~~avi~~~~~~~K~~~~~~~~~P~~ai 174 (379)
T TIGR02638 95 GGSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGTAAEVTINYVITDEENKRKFVCVDPHDIPDVAV 174 (379)
T ss_pred ChHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCchhhhhCCEEEEEECCCCeeEEEeCCCccccEEE
Confidence 8899999966665432 22345444443 3346667776554445555555555432
Q ss_pred cchhcCCccccccCCcccccchHHHHHHHHHHHc
Q psy11446 72 LGMFHGNYKAAQTGALAAAIPAEVLGYWTVYHRF 105 (150)
Q Consensus 72 ~~~~~~~~~~~~~g~~sv~VPG~~~g~~~~~~~~ 105 (150)
.| +.....-|..++.=+.++++..+.|.|
T Consensus 175 ~D-----p~l~~~lP~~~~a~t~~Dal~H~iEa~ 203 (379)
T TIGR02638 175 ID-----AEMMYSMPKSLTAATGMDALTHAIEGY 203 (379)
T ss_pred EC-----hHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 22 111223344566667788888777766
No 37
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=28.31 E-value=1.4e+02 Score=25.49 Aligned_cols=84 Identities=10% Similarity=0.149 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHhH-----------------------hhcCCCCCCccC--eeeEEEECCCCcEEEEeeeccccccCC
Q psy11446 17 GGNAVDAAITALLCDG-----------------------LSCPQSMGLGGG--FLMTLYNKTTGKAYAINAREKAPAAAT 71 (150)
Q Consensus 17 GGNAvDAAvA~~~~l~-----------------------Vv~P~~~giGGg--~~~l~~~~~~~~~~~id~~~~aP~~~~ 71 (150)
||.++|.|=++++++. ++-|..+|-|+- .+.++|+..+++-..+.....-|..+-
T Consensus 96 GGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTagTGse~t~~avi~~~~~~~k~~~~~~~~~P~~ai 175 (382)
T PRK10624 96 GGSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAGTAAEVTINYVITDEEKRRKFVCVDPHDIPQVAF 175 (382)
T ss_pred ChHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCchhhhhcceeeeecCCCCeeEEeeCccccCCEEE
Confidence 8899999966655432 223555565553 335667775554444544444554432
Q ss_pred cchhcCCccccccCCcccccchHHHHHHHHHHHc
Q psy11446 72 LGMFHGNYKAAQTGALAAAIPAEVLGYWTVYHRF 105 (150)
Q Consensus 72 ~~~~~~~~~~~~~g~~sv~VPG~~~g~~~~~~~~ 105 (150)
.| +.....-|..++.=+.++++..+.|.|
T Consensus 176 lD-----p~l~~tlP~~~~a~~g~Dal~HaiE~y 204 (382)
T PRK10624 176 VD-----ADMMDSMPPGLKAATGVDALTHAIEGY 204 (382)
T ss_pred EC-----hHhhcCCCHHHHHHHHHhHHHHHHHHH
Confidence 22 111122344566667777777777766
No 38
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=25.65 E-value=86 Score=26.99 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhHhhcCCCCCCccCeeeEEEECCCCc
Q psy11446 20 AVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGK 56 (150)
Q Consensus 20 AvDAAvA~~~~l~Vv~P~~~giGGg~~~l~~~~~~~~ 56 (150)
.+|=....++-.+..---.+|=|||||+|++-+.+++
T Consensus 267 ~IDriy~~A~~~GA~~gKl~GaG~gGFllf~~~p~k~ 303 (333)
T COG2605 267 AIDRIYELALKNGAYGGKLSGAGGGGFLLFFCDPSKR 303 (333)
T ss_pred HHHHHHHHHHhcCchhceeeccCCccEEEEEeCccch
Confidence 5777777778778777888999999999998775443
No 39
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=24.89 E-value=1.8e+02 Score=24.68 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHhH------------------------hhcCCCCCCccC--eeeEEEECCCCcEEEEeeeccccccC
Q psy11446 17 GGNAVDAAITALLCDG------------------------LSCPQSMGLGGG--FLMTLYNKTTGKAYAINAREKAPAAA 70 (150)
Q Consensus 17 GGNAvDAAvA~~~~l~------------------------Vv~P~~~giGGg--~~~l~~~~~~~~~~~id~~~~aP~~~ 70 (150)
||.++|+|=++++.+. ++-|..+|-|.- .+.+++|.+++.-..+......|..+
T Consensus 90 GGSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtagTGSE~t~~avi~~~~~~~K~~~~~~~~~P~~a 169 (375)
T cd08179 90 GGSPIDAAKAMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSGTATEVTAFSVITDYEKGIKYPLADFEITPDVA 169 (375)
T ss_pred CccHHHHHHHHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCchhHhhCCeEEEEeCCCCeEEEecCCcccCCEE
Confidence 9999999955554321 122333343432 23566666555444444444445433
Q ss_pred CcchhcCCccccccCCcccccchHHHHHHHHHHHc
Q psy11446 71 TLGMFHGNYKAAQTGALAAAIPAEVLGYWTVYHRF 105 (150)
Q Consensus 71 ~~~~~~~~~~~~~~g~~sv~VPG~~~g~~~~~~~~ 105 (150)
-.| +.....-|..++.=+.++++..+.+.|
T Consensus 170 i~D-----p~l~~~~P~~~~a~tg~Dal~ha~E~y 199 (375)
T cd08179 170 IVD-----PELTETMPPKLTAETGMDALTHAIEAY 199 (375)
T ss_pred EEC-----hhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 221 112223344566667778888888877
No 40
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=24.22 E-value=1.6e+02 Score=24.66 Aligned_cols=41 Identities=10% Similarity=0.195 Sum_probs=33.0
Q ss_pred HHcCCCCChHHhhHHHHHHhh-CCCccCH-HHHHHHHHhHHHhhc
Q psy11446 103 HRFGGGVPWRDLFEEPIALAL-NGVNINH-HLAKNIRLYEDHIRR 145 (150)
Q Consensus 103 ~~~gG~l~w~~ll~PaI~lA~-~Gf~v~~-~l~~~l~~~~~~l~~ 145 (150)
..| |+.+ .+.++-+.++++ +|+.+++ +..+.+....+.+++
T Consensus 258 ~~y-~~~~-~e~~~~~~~la~~eGi~ldpvytgk~~~a~~~~~~~ 300 (329)
T PRK14045 258 GEY-GKIT-KEVAKLIRSVGTMEGLILDPVYTGKAFYGLMDLAKK 300 (329)
T ss_pred CCC-CCCC-HHHHHHHHHHHHhhCCCCccchHHHHHHHHHHHHHc
Confidence 357 9999 899999999987 7999998 888877765555544
No 41
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=23.81 E-value=2e+02 Score=24.64 Aligned_cols=90 Identities=17% Similarity=0.144 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHhH---------------------hhcCCCCCCccC--eeeEEEECCCCcEEEEeeeccccccCCcc
Q psy11446 17 GGNAVDAAITALLCDG---------------------LSCPQSMGLGGG--FLMTLYNKTTGKAYAINAREKAPAAATLG 73 (150)
Q Consensus 17 GGNAvDAAvA~~~~l~---------------------Vv~P~~~giGGg--~~~l~~~~~~~~~~~id~~~~aP~~~~~~ 73 (150)
||.++|+|=++++.+. ++-|..+|-|.. .+.++++.+.+.-..++....-|..+-.|
T Consensus 88 GGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~avi~~~~~~~K~~~~~~~~~P~~~i~D 167 (386)
T cd08191 88 GGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTAGTGSEVTPVAVLTDPDNAMKVGVASPHLRPAIAIID 167 (386)
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCCcchhhhCCeEEEEeCCCCceEEEeCCCcccCEEEEC
Confidence 8999999977776552 445666555543 34567877666555665555555543222
Q ss_pred hhcCCccccccCCcccccchHHHHHHHHHHHcCCCCCh
Q psy11446 74 MFHGNYKAAQTGALAAAIPAEVLGYWTVYHRFGGGVPW 111 (150)
Q Consensus 74 ~~~~~~~~~~~g~~sv~VPG~~~g~~~~~~~~gG~l~w 111 (150)
+.....-+..+..=|.++++..+.|.|-.+..|
T Consensus 168 -----p~l~~~~P~~~~a~~g~Dal~h~iEa~~s~~~~ 200 (386)
T cd08191 168 -----PELTLTCPPGVTADSGADALTHAIESFTAMDRN 200 (386)
T ss_pred -----HHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 111223345677778889999888887333344
No 42
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=23.76 E-value=1.6e+02 Score=19.39 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=25.8
Q ss_pred CCCCChHHh-hHHHHHHhhCCCccCHHHHHHHHHhHHHhhcCCCC
Q psy11446 106 GGGVPWRDL-FEEPIALALNGVNINHHLAKNIRLYEDHIRRSPQL 149 (150)
Q Consensus 106 gG~l~w~~l-l~PaI~lA~~Gf~v~~~l~~~l~~~~~~l~~~p~~ 149 (150)
|.++++.|+ +-+.+..+.. ..+...-...+....+++.+.|.+
T Consensus 57 G~~~t~aDi~~~~~~~~~~~-~~~~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 57 GDRPTIADVAVYPYVALAPE-GGVDLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred CCCCCHHHHHHHHHHHHHhc-cCCChhhCcHHHHHHHHHHhCcCC
Confidence 478999999 5777765443 223223334555566667766654
No 43
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=21.93 E-value=2.3e+02 Score=24.53 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHhH---------------------hhcCCCCCCc--cCeeeEEEECCCCcEEEEeeeccccccCCcc
Q psy11446 17 GGNAVDAAITALLCDG---------------------LSCPQSMGLG--GGFLMTLYNKTTGKAYAINAREKAPAAATLG 73 (150)
Q Consensus 17 GGNAvDAAvA~~~~l~---------------------Vv~P~~~giG--Gg~~~l~~~~~~~~~~~id~~~~aP~~~~~~ 73 (150)
||.++|+|=++++++. +.-|..+|-| --.+.+++|.++++-..+.....-|..+-.|
T Consensus 115 GGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTtaGTGSE~t~~avi~~~~~~~K~~~~~~~~~P~~ailD 194 (395)
T PRK15454 115 GGSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAGTGSETTNVTVIIDAVSGRKQVLAHASLMPDVAILD 194 (395)
T ss_pred ChHHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCCCcchhhhCCeEEEEcCCCCeeEEeeCCcccCCEEEEC
Confidence 9999999966666532 1233333333 2334666776555545554444445433221
Q ss_pred hhcCCccccccCCcccccchHHHHHHHHHHHc
Q psy11446 74 MFHGNYKAAQTGALAAAIPAEVLGYWTVYHRF 105 (150)
Q Consensus 74 ~~~~~~~~~~~g~~sv~VPG~~~g~~~~~~~~ 105 (150)
+.....-|..++.-+.++++..+.|.|
T Consensus 195 -----P~l~~~~P~~~ta~tg~DAl~HaiE~y 221 (395)
T PRK15454 195 -----AALTEGVPSHVTAMTGIDALTHAIEAY 221 (395)
T ss_pred -----hhhhccCCHHHHHHHHHHHHHHHHHHH
Confidence 112223345666777788888888877
No 44
>PF13852 DUF4197: Protein of unknown function (DUF4197)
Probab=21.91 E-value=1.7e+02 Score=23.27 Aligned_cols=55 Identities=24% Similarity=0.263 Sum_probs=39.1
Q ss_pred cccchHHHHHHHHHHHcCCCCCh-----HHhhHHHHHHhhCCCccCHHHHHHHHHhHHHhhcCCCCC
Q psy11446 89 AAIPAEVLGYWTVYHRFGGGVPW-----RDLFEEPIALALNGVNINHHLAKNIRLYEDHIRRSPQLT 150 (150)
Q Consensus 89 v~VPG~~~g~~~~~~~~gG~l~w-----~~ll~PaI~lA~~Gf~v~~~l~~~l~~~~~~l~~~p~~~ 150 (150)
..-=|...-|..+..+| .++|. .+|-+.+.+-+-+| +...+...+..||++|.-|
T Consensus 133 l~~~g~~~~~~~l~~~~-~~~~~~~~~~~dL~~yvt~kaldg------lF~~ia~eE~~IR~nP~~r 192 (202)
T PF13852_consen 133 LEKVGATQYYNQLISKY-NKIPFVKKVDADLDDYVTDKALDG------LFYMIAEEEAAIRANPAAR 192 (202)
T ss_pred HHHhCHHHHHHHHHHHH-HcCCCCCCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHHcChhhh
Confidence 33446777888888888 88887 66666666666553 4566778888999998643
No 45
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=21.20 E-value=2e+02 Score=24.37 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHhH---------------------hhcCCCCCCccC--eeeEEEECCCCcEEEEeeeccccccCCcc
Q psy11446 17 GGNAVDAAITALLCDG---------------------LSCPQSMGLGGG--FLMTLYNKTTGKAYAINAREKAPAAATLG 73 (150)
Q Consensus 17 GGNAvDAAvA~~~~l~---------------------Vv~P~~~giGGg--~~~l~~~~~~~~~~~id~~~~aP~~~~~~ 73 (150)
||.++|+|=++++.+. +.-|..+|-|.. .+.++++.. +.-..++....-|..+-.|
T Consensus 92 GGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgSe~t~~avi~~~~-~~K~~~~~~~~~P~~ai~D 170 (376)
T cd08193 92 GGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTAGTGSEVTPIAIVTTPE-TLKVGVVSPHLLPDLAILD 170 (376)
T ss_pred CchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCCcchHhhCCeEEEEcCC-CceEEeeCccccCCEEEEC
Confidence 8999999977666541 333445444432 366778776 5555666555556543222
Q ss_pred hhcCCccccccCCcccccchHHHHHHHHHHHc
Q psy11446 74 MFHGNYKAAQTGALAAAIPAEVLGYWTVYHRF 105 (150)
Q Consensus 74 ~~~~~~~~~~~g~~sv~VPG~~~g~~~~~~~~ 105 (150)
+.....-+..+..-|.++++..+.|.|
T Consensus 171 -----p~l~~~lP~~~~~~~~~Dal~h~~E~y 197 (376)
T cd08193 171 -----PELTLGLPPHITAATGIDAMVHAIEAY 197 (376)
T ss_pred -----hHHHcCCCHHHHHHHhHHHHHHHHHHH
Confidence 111223455678888889999888877
No 46
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=21.00 E-value=1.7e+02 Score=24.47 Aligned_cols=83 Identities=12% Similarity=0.097 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHhH---hhcCCCCCCcc--CeeeEEEECCCCcEEEEeeeccccccCCcchhcCCccccccCCccccc
Q psy11446 17 GGNAVDAAITALLCDG---LSCPQSMGLGG--GFLMTLYNKTTGKAYAINAREKAPAAATLGMFHGNYKAAQTGALAAAI 91 (150)
Q Consensus 17 GGNAvDAAvA~~~~l~---Vv~P~~~giGG--g~~~l~~~~~~~~~~~id~~~~aP~~~~~~~~~~~~~~~~~g~~sv~V 91 (150)
||.++|+|=++++.++ ++-|..+|-|. ..+.++++...++...+... ..|..+-.| +.....-|..+..
T Consensus 86 GGS~iD~aK~ia~~~~~P~iaIPTTagTgse~t~~avi~~~~~~~k~~~~~~-~~P~~ai~D-----p~l~~t~P~~~~a 159 (351)
T cd08170 86 GGKTLDTAKAVADYLGAPVVIVPTIASTDAPTSALSVIYTDDGEFEEYLFLP-RNPDLVLVD-----TDVIAKAPVRFLV 159 (351)
T ss_pred CchhhHHHHHHHHHcCCCEEEeCCccccCcccccceEEECCCCceeeeeecc-CCCCEEEEC-----hHHHhhCCHHHHH
Confidence 9999999988877654 45566666665 45677787754433333222 345443221 1111223345556
Q ss_pred chHHHHHHHHHHHc
Q psy11446 92 PAEVLGYWTVYHRF 105 (150)
Q Consensus 92 PG~~~g~~~~~~~~ 105 (150)
=|.++.+..+.+.|
T Consensus 160 ~~~~Dal~h~~E~~ 173 (351)
T cd08170 160 AGIGDALATYFEAR 173 (351)
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777776643
No 47
>TIGR03175 AllD ureidoglycolate dehydrogenase. This enzyme converts ureidoglycolate to oxalureate in the non-urea-forming catabolism of allantoin (GenProp0687). The pathway has been characterized in E. coli and is observed in the genomes of Entercoccus faecalis and Bacillus licheniformis.
Probab=20.63 E-value=2.2e+02 Score=24.60 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=32.7
Q ss_pred ccCCcccccchHHHHHHHHHHHcCCCCChHHhhHHHHHHhhCCCccCHHHHHHHHHhHHHhhcCC
Q psy11446 83 QTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNINHHLAKNIRLYEDHIRRSP 147 (150)
Q Consensus 83 ~~g~~sv~VPG~~~g~~~~~~~~gG~l~w~~ll~PaI~lA~~Gf~v~~~l~~~l~~~~~~l~~~p 147 (150)
..|...|-+||+..--.... -.++|++|++.+...|.+..-..+.++
T Consensus 296 a~g~~~V~~PGe~e~~~~~~------------------~~~~GI~l~~~~~~~L~~la~~~~~~~ 342 (349)
T TIGR03175 296 AEGFKQVYYPGEDGDLKQKK------------------ADMEGIEIVDDIYQYLVSDAVHYKSYE 342 (349)
T ss_pred CCCCCceECCCcHHHHHHHH------------------HHccCCccCHHHHHHHHHHHHHHHhcc
Confidence 35666799999865433322 247999999999999977665555543
Done!