RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11446
(150 letters)
>gnl|CDD|216247 pfam01019, G_glu_transpept, Gamma-glutamyltranspeptidase.
Length = 495
Score = 159 bits (404), Expect = 2e-47
Identities = 66/141 (46%), Positives = 83/141 (58%), Gaps = 3/141 (2%)
Query: 11 RNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAA 70
ILRKGGNAVDAA+ A LC G+ P S G+GGG M +Y+ GK I+ARE APAAA
Sbjct: 1 AEILRKGGNAVDAAVAAALCLGVVEPHSSGIGGGGFMLIYDAGGGKVLVIDARETAPAAA 60
Query: 71 TLGMFHGNY--KAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNI 128
T MF GN + +TG LA +P EV G + R+ G +PW DL E I LA G +
Sbjct: 61 TKDMFDGNGDPELPKTGGLAVGVPGEVAGLEEAHKRY-GRLPWADLLEPAIKLAREGFPV 119
Query: 129 NHHLAKNIRLYEDHIRRSPQL 149
+ +LA + L E +R P L
Sbjct: 120 SPYLAAALALAEPRLRADPGL 140
>gnl|CDD|223482 COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and
metabolism].
Length = 539
Score = 126 bits (318), Expect = 8e-35
Identities = 54/140 (38%), Positives = 75/140 (53%), Gaps = 6/140 (4%)
Query: 13 ILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAATL 72
IL+KGGNAVDAA+ + PQS G+GGG M + +KT GK A++ RE APAAAT
Sbjct: 33 ILKKGGNAVDAAVAVAAALAVVEPQSSGIGGGGFMLIRDKTGGKVTALDGRETAPAAATK 92
Query: 73 GMF-----HGNYKAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVN 127
M+ + + G LA +P V G + R+ G +PW DL E I LA +G
Sbjct: 93 EMYLDKDGQVDPELPVRGGLAVGVPGTVAGLEEAHKRY-GTLPWADLLEPAIKLARDGFP 151
Query: 128 INHHLAKNIRLYEDHIRRSP 147
++ LA I + + + P
Sbjct: 152 VSPRLAALIASAAERLAKDP 171
>gnl|CDD|129176 TIGR00066, g_glut_trans, gamma-glutamyltranspeptidase. Also called
gamma-glutamyltranspeptidase (ggt). Some members of this
family have antibiotic synthesis or resistance
activities. In the case of a cephalosporin acylase from
Pseudomonas sp., the enzyme was shown to retain some
gamma-glutamyltranspeptidase activity. Other, more
distantly related proteins have ggt-related activities
and score below the trusted cutoff [Biosynthesis of
cofactors, prosthetic groups, and carriers, Glutathione
and analogs].
Length = 516
Score = 100 bits (251), Expect = 1e-25
Identities = 54/141 (38%), Positives = 71/141 (50%), Gaps = 6/141 (4%)
Query: 13 ILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAATL 72
IL++GGNA DAA+ L + P GLGGG M + K T AI+ RE+APA AT
Sbjct: 17 ILKEGGNAFDAAVAVGLALAVVEPFMTGLGGGGFMLISGKKTKDTTAIDFRERAPAKATR 76
Query: 73 GMFHGNY-----KAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVN 127
MF + TG LA +P V G + G +P +DL E I LA NG
Sbjct: 77 DMFLDKSGNPLPGKSLTGGLAIGVPGTVAG-LEAALKKYGTLPLKDLIEPAIKLARNGFP 135
Query: 128 INHHLAKNIRLYEDHIRRSPQ 148
IN LA + LYE+ + + +
Sbjct: 136 INEALADTLELYEEVLLTTKE 156
>gnl|CDD|177836 PLN02180, PLN02180, gamma-glutamyl transpeptidase 4.
Length = 639
Score = 99.8 bits (248), Expect = 3e-25
Identities = 52/138 (37%), Positives = 81/138 (58%), Gaps = 1/138 (0%)
Query: 12 NILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAAT 71
++LR+GG+AVDAA+ LC G+ P S G+GGG + + ++ KA A + RE AP AA+
Sbjct: 98 SVLRRGGHAVDAAVAITLCIGVVNPMSSGIGGGSFLIVSSQKDSKAEAFDMRETAPLAAS 157
Query: 72 LGMFHGNYKAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNINHH 131
M+ + A GAL+ +P E+ G + + R+ G +PW+ LFE I LA +G ++ +
Sbjct: 158 KDMYKNDASAKSLGALSMGVPGEIAGLYEAWKRY-GRLPWKPLFEPAIELARDGFVVHPY 216
Query: 132 LAKNIRLYEDHIRRSPQL 149
L K I + I + P L
Sbjct: 217 LGKAISSHAAMILKDPGL 234
>gnl|CDD|177849 PLN02198, PLN02198, glutathione gamma-glutamylcysteinyltransferase.
Length = 573
Score = 85.1 bits (210), Expect = 4e-20
Identities = 48/121 (39%), Positives = 71/121 (58%), Gaps = 2/121 (1%)
Query: 12 NILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAAT 71
N+LR+GGNA+DA++ A LC G+ P S G+GGG L G+ A ++RE AP +AT
Sbjct: 49 NVLREGGNAIDASVAAALCLGVVSPASSGIGGGAFT-LIKLANGEEIAYDSRETAPLSAT 107
Query: 72 LGMFHGNYKAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNINHH 131
M+ GN + + GAL+ +P EV G +T + + G +PW+ L LA G I+ +
Sbjct: 108 ENMYGGNVELKKKGALSVGVPGEVAGLFTAWKQH-GKLPWKRLVRPAEKLAAEGFKISKY 166
Query: 132 L 132
L
Sbjct: 167 L 167
>gnl|CDD|181992 PRK09615, ggt, gamma-glutamyltranspeptidase; Reviewed.
Length = 581
Score = 77.6 bits (191), Expect = 2e-17
Identities = 49/133 (36%), Positives = 70/133 (52%), Gaps = 7/133 (5%)
Query: 12 NILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAAT 71
+IL++GGNAVDAA+ ++ PQ+ LGGG M L K G AI+ RE APA AT
Sbjct: 65 DILKQGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLLRTK-NGNTTAIDFREMAPAKAT 123
Query: 72 LGMF---HGN--YKAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGV 126
MF GN K + T LA+ P V G+ ++ G +P + + LA +G
Sbjct: 124 RDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKY-GTMPLNKVVQPAFKLARDGF 182
Query: 127 NINHHLAKNIRLY 139
+N LA +++ Y
Sbjct: 183 IVNDALADDLKTY 195
>gnl|CDD|227604 COG5279, CYK3, Uncharacterized protein involved in cytokinesis,
contains TGc (transglutaminase/protease-like) domain
[Cell division and chromosome partitioning].
Length = 521
Score = 33.4 bits (76), Expect = 0.034
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 36 PQSMGLGGGFLMTLYNKTTGKAYAINAR--EKAPAAATLGMFHGNYKAAQTGALAAAIPA 93
PQ L G + YA + A T F G+ +TG A I A
Sbjct: 454 PQCGTLHFG----VQYPFNVSVYACDESNQRLAIQTPTGIFFSGSLTINETGVYRALILA 509
Query: 94 EVLGYWTVY 102
E +G W+VY
Sbjct: 510 ESIGRWSVY 518
>gnl|CDD|227930 COG5643, COG5643, Protein containing a metal-binding domain shared
with formylmethanofuran dehydrogenase subunit E [General
function prediction only].
Length = 685
Score = 28.6 bits (64), Expect = 1.4
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 13/60 (21%)
Query: 50 YNKTTGKAYAINAREKAPAAATLGMFHGNYKAAQTGALAAAIPAEVLGYWTVYHRFGGGV 109
YN +G +A ++ + + G A P ++LG + ++ F GV
Sbjct: 483 YNPVSGPLFASSSSD-------------IPRINDIGPYAIDPPYDLLGCFLFHNHFCPGV 529
>gnl|CDD|129580 TIGR00489, aEF-1_beta, translation elongation factor aEF-1 beta.
This model describes the archaeal translation elongation
factor aEF-1 beta. The member from Sulfolobus
solfataricus was demonstrated experimentally. It is a
dimer that catalyzes the exchange of GDP for GTP on
aEF-1 alpha [Protein synthesis, Translation factors].
Length = 88
Score = 27.2 bits (60), Expect = 1.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 108 GVPWRDLFEEPIALALNGVNI 128
GV R + EEPIA L +N+
Sbjct: 33 GVEIRKIDEEPIAFGLVAINV 53
>gnl|CDD|217852 pfam04030, ALO, D-arabinono-1,4-lactone oxidase. This domain is
specific to D-arabinono-1,4-lactone oxidase EC:1.1.3.-,
which is involved in the final step of the
D-erythroascorbic acid biosynthesis pathway.
Length = 258
Score = 28.0 bits (63), Expect = 1.9
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 100 TVYHRFGGGVPWRDLFE--EPIALALNGVNINHHLAKN 135
+Y +G VP+ F E I G H AKN
Sbjct: 185 HMYRPYGRNVPYLRYFRAFEDIMKKYGGRP---HWAKN 219
>gnl|CDD|225003 COG2092, EFB1, Translation elongation factor EF-1beta [Translation,
ribosomal structure and biogenesis].
Length = 88
Score = 26.9 bits (60), Expect = 2.2
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 108 GVPWRDLFEEPIALALNGVNIN 129
G + EEPIA L + +
Sbjct: 33 GYELIKIEEEPIAFGLKALKLY 54
>gnl|CDD|239950 cd04513, Glycosylasparaginase, Glycosylasparaginase catalyzes the
hydrolysis of the glycosylamide bond of
asparagine-linked glycoproteins. This enzyme is an
amidase located inside lysosomes. Mutation of this gene
in humans causes a genetic disorder known as
aspartylglycosaminuria (AGU). The glycosylasparaginase
precursor undergoes autoproteolysis through an N-O or
N-S acyl rearrangement of the peptide bond, which leads
to the cleavage of a peptide bond between an Asp and a
Thr. This proteolysis step generates an exposed
N-terminal catalytic threonine and activates the
enzyme.
Length = 263
Score = 27.2 bits (61), Expect = 3.0
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 12 NILRKGGNAVDAAITAL-LCDGLSCPQSMGLGG 43
+L+ GG+A+DA LC+ C +S+G GG
Sbjct: 17 EVLKAGGSALDAVEEGCSLCEDDPCDKSVGYGG 49
>gnl|CDD|240299 PTZ00164, PTZ00164, bifunctional dihydrofolate
reductase-thymidylate synthase; Provisional.
Length = 514
Score = 27.3 bits (61), Expect = 4.0
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 109 VPWRDLFEEPIALALNGVNINHHLAKNIRLYEDHIRRS 146
V R + EE + N N L K +R++E + R
Sbjct: 280 VFLRGIIEELLWFIRGETNGNLLLDKGVRIWEGNGSRE 317
>gnl|CDD|182710 PRK10765, PRK10765, nitroreductase A; Provisional.
Length = 240
Score = 26.5 bits (59), Expect = 5.0
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 20 AVDAAITALLCDGLSCPQSMGLGGGFLMTLYN 51
AVD AI A L +S+GLGG ++ L N
Sbjct: 105 AVDTAIMAQNA--LLAAESLGLGGVYIGGLRN 134
>gnl|CDD|218986 pfam06317, Arena_RNA_pol, Arenavirus RNA polymerase. This family
consists of several Arenavirus RNA polymerase proteins
(EC:2.7.7.48).
Length = 2206
Score = 26.9 bits (60), Expect = 5.9
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 37 QSMGLGGGFLMTLYNKT--TGKAYAINAREK 65
Q L G + LY KT + Y+IN +K
Sbjct: 534 QRFLLEGLEGLLLYQKTGERSRCYSINLSDK 564
>gnl|CDD|222785 PHA00368, PHA00368, internal virion protein D.
Length = 1315
Score = 26.7 bits (59), Expect = 6.6
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 8/32 (25%)
Query: 16 KGGNAVDAAITALLCDGLSCPQSMGLGGGFLM 47
K A+D A+T ++ SMGL GG+ +
Sbjct: 1127 KNNRAIDMALTHVI--------SMGLAGGYYV 1150
>gnl|CDD|151033 pfam10460, Peptidase_M30, Peptidase M30. This family contains the
metallopeptidase hyicolysin. Hyicolysin has a zinc ion
which is liganded by two histidine and one glutamate
residue.
Length = 366
Score = 26.4 bits (58), Expect = 7.2
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Query: 30 CDGLSCPQSMG------LGGGF---LMTLYNKTTGKAYAINAREKAPAAATLGMFHGNYK 80
C+ S S+G LG F L+T + T A A A A++LG +
Sbjct: 223 CESYSVSGSLGGFLNRQLGLDFYKNLLTNTSATDSVAVLDAAIRAAQPASSLGEALRRFG 282
Query: 81 AAQTGALAAA 90
A L A
Sbjct: 283 VASGALLPAP 292
>gnl|CDD|204985 pfam12624, Chorein_N, N-terminal region of Chorein, a TM
vesicle-mediated sorter. Although mutations in the
full-length vacuolar protein sorting 13A (VPS13A)
protein in vertebrates lead to the disease of
chorea-acanthocytosis, the exact function of any of the
regions within the protein is not yet known. This region
is the proposed leucine zipper at the N-terminus. The
full-length protein is a transmembrane protein with a
presumed role in vesicle-mediated sorting and
intracellular protein transport.
Length = 117
Score = 25.6 bits (57), Expect = 7.7
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 109 VPWRDLFEEPIALALNGVNI 128
+PW+ L EP+ + ++ V I
Sbjct: 67 IPWKSLGSEPVVITIDDVYI 86
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 26.4 bits (58), Expect = 7.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 17 GGNAVDAAITALLCDGLSCPQS 38
GGN +D IT LC+ P S
Sbjct: 229 GGNDIDVVITQYLCNKFDLPNS 250
>gnl|CDD|224370 COG1453, COG1453, Predicted oxidoreductases of the aldo/keto
reductase family [General function prediction only].
Length = 391
Score = 25.8 bits (57), Expect = 9.8
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 85 GALAAAIPAEVLGYWTVYHRFGGGVPWRDLF---EEPIALALNGVNINHHLAKNIRLYE 140
G L +P ++ W + + L+G+N L +N+++
Sbjct: 208 GGLLYNVPEKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIAS 266
>gnl|CDD|224833 COG1922, WecG, Teichoic acid biosynthesis proteins [Cell envelope
biogenesis, outer membrane].
Length = 253
Score = 25.7 bits (57), Expect = 9.9
Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 12/76 (15%)
Query: 59 AINAREKAPAAATLGMFHGNYKAAQTGALAAAIPAEVLGYWTVYHRFGGGVP-------- 110
A R K P +G G + + A+ I A V G GVP
Sbjct: 125 AAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILLV----GMGVPRQEIWIAR 180
Query: 111 WRDLFEEPIALALNGV 126
R +A+ + G
Sbjct: 181 NRQQLPVAVAIGVGGS 196
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.422
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,837,510
Number of extensions: 723520
Number of successful extensions: 742
Number of sequences better than 10.0: 1
Number of HSP's gapped: 732
Number of HSP's successfully gapped: 36
Length of query: 150
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 62
Effective length of database: 7,034,450
Effective search space: 436135900
Effective search space used: 436135900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.4 bits)