RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11446
(150 letters)
>2e0w_A Gamma-glutamyltranspeptidase; NTN hydrolase, precursor, gamma-GTP,
post-translational PROC maturation, transferase; 2.55A
{Escherichia coli K12} SCOP: d.153.1.6
Length = 556
Score = 133 bits (337), Expect = 1e-37
Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 8/143 (5%)
Query: 11 RNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAA 70
+IL++GGNAVDAA+ ++ PQ+ LGGG M + +K G AI+ RE APA A
Sbjct: 39 VDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRSK-NGNTTAIDFREMAPAKA 97
Query: 71 TLGMFHG-----NYKAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNG 125
T MF + K + T LA+ P V G+ ++ G +P + + LA +G
Sbjct: 98 TRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKY-GTMPLNKVVQPAFKLARDG 156
Query: 126 VNINHHLAKNIRLY-EDHIRRSP 147
+N LA +++ Y + +
Sbjct: 157 FIVNDALADDLKTYGSEVLPNHE 179
>2v36_A Gamma-glutamyltranspeptidase large chain; transferase, glutathione
biosynthesis, gamma-glutamyl transferase,
acyltransferase, zymogen; 1.85A {Bacillus subtilis} PDB:
3a75_A*
Length = 376
Score = 127 bits (321), Expect = 3e-36
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 13 ILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAATL 72
+L+KGGNA+DAA+ ++ P G+GGG M +Y+ T I++RE+APA AT
Sbjct: 37 VLKKGGNAIDAAVAIQFALNVTEPMMSGIGGGGFMMVYDGKTKDTTIIDSRERAPAGATP 96
Query: 73 GMF---HGN---YKAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGV 126
MF +G + T A +P + G ++ G + L I LA G
Sbjct: 97 DMFLDENGKAIPFSERVTKGTAVGVPGTLKGLEEALDKW-GTRSMKQLITPSIKLAEKGF 155
Query: 127 NINHHLAKNIRLYEDHIRRSP 147
I+ LA+ I Y++ + R+
Sbjct: 156 PIDSVLAEAISDYQEKLSRTA 176
>2dg5_A Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT,
gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli
K12} SCOP: d.153.1.6 PDB: 2dbu_A 2dbw_A* 2dbx_A* 2e0x_A
2e0y_A 2z8i_A* 2z8j_A* 2z8k_A*
Length = 366
Score = 119 bits (301), Expect = 2e-33
Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 7/140 (5%)
Query: 13 ILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAATL 72
IL++GGNAVDAA+ ++ PQ+ LGGG M + +K G AI+ RE APA AT
Sbjct: 41 ILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRSK-NGNTTAIDFREMAPAKATR 99
Query: 73 GMF---HGNY--KAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVN 127
MF GN K + T LA+ P V G+ ++ G +P + + LA +G
Sbjct: 100 DMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKY-GTMPLNKVVQPAFKLARDGFI 158
Query: 128 INHHLAKNIRLYEDHIRRSP 147
+N LA +++ Y + +
Sbjct: 159 VNDALADDLKTYGSEVLPNH 178
>2qmc_A GGT, gamma-glutamyltranspeptidase; NTN-hydrolase, transferase; HET:
GTB; 1.55A {Helicobacter pylori} PDB: 2qm6_A* 3fnm_A*
2nqo_A
Length = 377
Score = 114 bits (288), Expect = 2e-31
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 12 NILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAAT 71
+L +GGNA+DAA+ + P + +GGG ++ G+ A++ REKAP AT
Sbjct: 51 KVLEEGGNAIDAAVAIGFALAVVHPAAGNIGGGGFAVIHLA-NGENVALDFREKAPLKAT 109
Query: 72 LGMF---HGNY--KAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGV 126
MF GN K ++ G LAA +P V G + ++ G L + I LA NG
Sbjct: 110 KNMFLDKQGNVVPKLSEDGYLAAGVPGTVAGMEAMLKKY-GTKKLSQLIDPAIKLAENGY 168
Query: 127 NINHHLAKNIRLYEDHIRRSP 147
I+ A+ ++ + +
Sbjct: 169 AISQRQAETLKEARERFLKYS 189
>3g9k_L Capsule biosynthesis protein CAPD; CAPD protein, the great lakes
regional C excellence, GLRCE, capsule
biogenesis/degradation; HET: GLU; 1.79A {Bacillus
anthracis} PDB: 3ga9_L*
Length = 323
Score = 99.2 bits (248), Expect = 5e-26
Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 15/135 (11%)
Query: 13 ILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAATL 72
+L+ GG+AVDAAI G+ + G+GGG M + +K K I+ RE P
Sbjct: 37 VLKNGGSAVDAAIVVSYVLGVVELHASGIGGGGGMLIISK--DKETFIDYRETTPYFTG- 93
Query: 73 GMFHGNYKAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNINHHL 132
+P V G ++ + G +P +L + I A G ++ L
Sbjct: 94 -----------NQKPHIGVPGFVAGMEYIHDNY-GSLPMGELLQPAINYAEKGFKVDDSL 141
Query: 133 AKNIRLYEDHIRRSP 147
+ L + I
Sbjct: 142 TMRLDLAKPRIYSDK 156
>2nlz_A Cephalosporin acylase; structural genomics, protein structure
initiative, PSI, nysgxrc; 2.70A {Bacillus halodurans}
SCOP: d.153.1.6
Length = 547
Score = 100 bits (252), Expect = 8e-26
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 6/138 (4%)
Query: 13 ILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAATL 72
IL+ GGNA+DAAI + P S G+G ++ T GK + +N +AP + T+
Sbjct: 40 ILKAGGNAIDAAIATATALTVLEPTSNGIGSDAFALVW--TKGKLHGLNGSGRAPMSLTM 97
Query: 73 GMFHGNYKAAQ---TGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNIN 129
+ G + +P + + + G +P I A G +
Sbjct: 98 EAVKAKGYEQELPPYGVIPVTVPGAPGAWAELAKMY-GNLPLAASLAPAIRYAEEGYPVT 156
Query: 130 HHLAKNIRLYEDHIRRSP 147
LAK + D ++
Sbjct: 157 PTLAKYWKAAYDRVKTEW 174
>2i3o_A Gamma-glutamyltransferase related protein; structural genomics,
PSI, protein structure initiative; 2.03A {Thermoplasma
acidophilum} SCOP: d.153.1.6
Length = 516
Score = 100 bits (251), Expect = 1e-25
Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 5/138 (3%)
Query: 13 ILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAATL 72
IL++GGN DAA+ ++ GLGG + ++ G+ +N +A A ++
Sbjct: 29 ILKRGGNIFDAALAVSAMLCVTQNNLCGLGGDLFALIRDE-NGQIMDLNGSGQASRAVSI 87
Query: 73 GMF--HGNYKAAQTGALAAA-IPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNIN 129
+ G K + G AA +P + ++ +F + D+ E I A G I
Sbjct: 88 DYYESMGLTKIPERGPYAAITVPGIAGSWDEIFRKF-ATMDIADILEPAIRTASAGFPIT 146
Query: 130 HHLAKNIRLYEDHIRRSP 147
+ + +I I +
Sbjct: 147 QNYSDSIARSAPVIGQYR 164
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.001
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 11/78 (14%)
Query: 73 GMFHGNYKAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDL--FEEPIALALNGVNINH 130
G+ G+ K +A +V + V + + W +L P + + +
Sbjct: 157 GVL-GSGKTW----VAL----DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 131 HLAKNIRLYEDHIRRSPQ 148
+ N DH
Sbjct: 208 QIDPNWTSRSDHSSNIKL 225
Score = 32.5 bits (73), Expect = 0.040
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 30/108 (27%)
Query: 63 REKAPAAATLGMFH----GNYKAAQTGALAAAIPAEVLGYW---TVYH--------RFGG 107
+ K L H +Y +T IP + Y+ +H R
Sbjct: 436 KVKLENEYAL---HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 108 GVPWRDLF------EEPI---ALALNGVNINHHLAKNIRLYEDHIRRS 146
+R +F E+ I + A N + + ++ Y+ +I +
Sbjct: 493 ---FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.36
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 47 MTLYNKTTGKAYAINA 62
+ LY + A AI A
Sbjct: 29 LKLYADDSAPALAIKA 44
Score = 28.0 bits (61), Expect = 0.85
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 6/20 (30%)
Query: 56 KAYAINAREKAPA-A--ATL 72
K YA + APA A AT+
Sbjct: 30 KLYA---DDSAPALAIKATM 46
Score = 25.7 bits (55), Expect = 6.2
Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
Query: 132 LAKNIRLYEDHIRRSPQL 149
L +++LY D +P L
Sbjct: 25 LQASLKLYADD--SAPAL 40
>1apy_A Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET:
NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB:
1apz_A*
Length = 162
Score = 27.7 bits (62), Expect = 1.3
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 12 NILRKGGNAVDAAITAL-LCDGLSCPQSMGLGG 43
L GG+A+DA + +C+ C S+G GG
Sbjct: 22 RALASGGSALDAVESGCAMCEREQCDGSVGFGG 54
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE
membrane protein, transport protein; HET: BNG; 2.78A
{Escherichia coli}
Length = 429
Score = 26.4 bits (59), Expect = 4.8
Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 13/77 (16%)
Query: 27 ALLCDGLSCPQSMGLGGGFLMTLYNKTTG-----KAYAINA-REKAPAAATLGMFHGNYK 80
++ +GLS S G G T Y + G + Y+ A A L
Sbjct: 266 SMFANGLSTVIS-GFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCV----- 319
Query: 81 AAQTGALAAAIPAEVLG 97
+ A IP V+G
Sbjct: 320 -GKLAAAIQMIPLPVMG 335
>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ,
hydrolase/transferase complex; 1.50A {Pseudomonas
aeruginosa} PDB: 2faq_A* 2far_A*
Length = 309
Score = 26.3 bits (58), Expect = 4.8
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 13/75 (17%)
Query: 50 YNKTTGKAYAINAREKAPAAATLGMFHGNYKAAQTGALAAAIPAEVLGYWTVYHRF---G 106
+T AY++ ARE P + + L + A ++ R
Sbjct: 234 RGASTVAAYSVRAREGLPVSVPVFR----------EELDSLQGANQWNLRSLPQRLDELA 283
Query: 107 GGVPWRDLFEEPIAL 121
G PW D +
Sbjct: 284 GDDPWADYAGTRQRI 298
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown
function; 2.10A {Bifidobacterium adolescentis atcc
1570ORGANISM_TAXID}
Length = 440
Score = 26.0 bits (57), Expect = 6.5
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 104 RFGGGVPWR-DLFEEPIALALNGVNINHH 131
G W+ L E ++ A+ G + +HH
Sbjct: 412 SEQGARDWQVSLVAESVSRAIEGHHHHHH 440
>2qpn_A Beta-lactamase GES-1; APO-enzyme, plasmid, hydrolase; 1.10A
{Klebsiella pneumoniae} PDB: 3nia_A* 3ni9_A*
Length = 287
Score = 25.7 bits (56), Expect = 6.7
Identities = 5/88 (5%), Positives = 17/88 (19%), Gaps = 23/88 (26%)
Query: 49 LYNKTTGKAYAINAREKAPAAATLGMFHGNYKAAQTGALAAAIPAEVLGYW--------- 99
+ + ++ +T +K + I +
Sbjct: 43 IVDPQGEIVAGHRMAQRFAMCST-------FKFPLAALVFERIDSGTERGDRKLSYGPDM 95
Query: 100 -------TVYHRFGGGVPWRDLFEEPIA 120
T G + + + +
Sbjct: 96 IVEWSPATERFLASGHMTVLEAAQAAVQ 123
>2wk0_A Beta-lactamase; hydrolase, iodopenicillanate, antibiotic
resistance; HET: BIY CIT; 1.65A {Bacillus licheniformis}
PDB: 2x71_A* 3b3x_A* 1i2s_A* 1i2w_A* 2y91_A* 2blm_A
4blm_A 3sh9_A* 3sh7_A* 3sh8_A* 3ly3_A 3kgo_A* 3ly4_A*
3kgm_A* 3kgn_A* 3m2j_A* 3m2k_A* 3soi_A* 1mbl_A
Length = 265
Score = 25.2 bits (55), Expect = 8.8
Identities = 10/84 (11%), Positives = 22/84 (26%), Gaps = 18/84 (21%)
Query: 49 LYNKTTGKAYAINARE--------KAPAAATLGMFHGNYKAAQTGALAAAI---PAEVLG 97
+ T + E KA L + L I +++
Sbjct: 23 ALDTGTNRTVTYRPDERFAFASTIKALTVGVL------LQQKSIEDLNQRITYTRDDLVN 76
Query: 98 YWTV-YHRFGGGVPWRDLFEEPIA 120
Y + G+ ++L + +
Sbjct: 77 YNPITEKHVDTGMTLKELADASLR 100
>4gdv_A L-asparaginase; NTN enzyme, homodimer, hydrolase, L-asparagine;
1.75A {Homo sapiens} PDB: 4gdu_A 4gdt_A 4gdw_A
Length = 310
Score = 25.3 bits (56), Expect = 9.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 2 KLNVGLSTCRNILRKGGNAVDAAITA 27
+ + ILR+GG+AVDA A
Sbjct: 28 GMVRAATVGYGILREGGSAVDAVEGA 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.422
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,436,151
Number of extensions: 146756
Number of successful extensions: 365
Number of sequences better than 10.0: 1
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 42
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)