RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11446
         (150 letters)



>g2dg5.1 d.153.1.6 (A:37-387,B:391-580)
           Gamma-glutamyltranspeptidase, GGT {Escherichia coli
           [TaxId: 562]}
          Length = 541

 Score =  107 bits (269), Expect = 7e-29
 Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 7/143 (4%)

Query: 11  RNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAA 70
            +IL++GGNAVDAA+       ++ PQ+  LGGG  M + +K  G   AI+ RE APA A
Sbjct: 27  VDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRSK-NGNTTAIDFREMAPAKA 85

Query: 71  TLGMFHGNY-----KAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNG 125
           T  MF  +      K + T  LA+  P  V G+     ++ G +P   + +    LA +G
Sbjct: 86  TRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKY-GTMPLNKVVQPAFKLARDG 144

Query: 126 VNINHHLAKNIRLYEDHIRRSPQ 148
             +N  LA +++ Y   +  + +
Sbjct: 145 FIVNDALADDLKTYGSEVLPNHE 167


>d2nlza1 d.153.1.6 (A:3-539) Cephalosporin acylase {Bacillus
           halodurans [TaxId: 86665]}
          Length = 537

 Score =  104 bits (261), Expect = 1e-27
 Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 6/140 (4%)

Query: 11  RNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAA 70
            +IL+ GGNA+DAAI       +  P S G+G      ++ K  GK + +N   +AP + 
Sbjct: 36  LDILKAGGNAIDAAIATATALTVLEPTSNGIGSDAFALVWTK--GKLHGLNGSGRAPMSL 93

Query: 71  TLGMFHGN---YKAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVN 127
           T+          +    G +   +P     +  +   + G +P        I  A  G  
Sbjct: 94  TMEAVKAKGYEQELPPYGVIPVTVPGAPGAWAELAKMY-GNLPLAASLAPAIRYAEEGYP 152

Query: 128 INHHLAKNIRLYEDHIRRSP 147
           +   LAK  +   D ++   
Sbjct: 153 VTPTLAKYWKAAYDRVKTEW 172


>g2nqo.1 d.153.1.6 (A:29-375,B:380-565)
           Gamma-glutamyltranspeptidase, GGT {Helicobacter pylori
           [TaxId: 210]}
          Length = 533

 Score =  103 bits (257), Expect = 3e-27
 Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 7/140 (5%)

Query: 11  RNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAA 70
           + +L +GGNA+DAA+       +  P +  +GGG    ++    G+  A++ REKAP  A
Sbjct: 24  QKVLEEGGNAIDAAVAIGFALAVVHPAAGNIGGGGFAVIHLA-NGENVALDFREKAPLKA 82

Query: 71  TLGMFHGNY-----KAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNG 125
           T  MF         K ++ G LAA +P  V G   +  ++G       L +  I LA NG
Sbjct: 83  TKNMFLDKQGNVVPKLSEDGYLAAGVPGTVAGMEAMLKKYGTK-KLSQLIDPAIKLAENG 141

Query: 126 VNINHHLAKNIRLYEDHIRR 145
             I+   A+ ++   +   +
Sbjct: 142 YAISQRQAETLKEARERFLK 161


>d2i3oa1 d.153.1.6 (A:1-516) Hypothetical protein Ta0994
           {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 516

 Score =  100 bits (248), Expect = 5e-26
 Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 3/137 (2%)

Query: 11  RNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAA 70
           R+IL++GGN  DAA+       ++     GLGG     + ++  G+   +N   +A  A 
Sbjct: 27  RDILKRGGNIFDAALAVSAMLCVTQNNLCGLGGDLFALIRDE-NGQIMDLNGSGQASRAV 85

Query: 71  TLGMF--HGNYKAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNI 128
           ++  +   G  K  + G  AA     + G W    R    +   D+ E  I  A  G  I
Sbjct: 86  SIDYYESMGLTKIPERGPYAAITVPGIAGSWDEIFRKFATMDIADILEPAIRTASAGFPI 145

Query: 129 NHHLAKNIRLYEDHIRR 145
             + + +I      I +
Sbjct: 146 TQNYSDSIARSAPVIGQ 162


>g1apy.1 d.153.1.5 (A:,B:) Glycosylasparaginase
          (aspartylglucosaminidase, AGA) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 302

 Score = 26.2 bits (57), Expect = 1.6
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 12 NILRKGGNAVDAAITAL-LCDGLSCPQSMGLGG 43
            L  GG+A+DA  +   +C+   C  S+G GG
Sbjct: 21 RALASGGSALDAVESGCAMCEREQCDGSVGFGG 53


>g2gac.1 d.153.1.5 (A:,B:) Glycosylasparaginase
          (aspartylglucosaminidase, AGA) {Flavobacterium
          meningosepticum [TaxId: 238]}
          Length = 275

 Score = 25.4 bits (55), Expect = 3.2
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 12 NILRKGGNAVDAAITAL-LCDGLSCPQSMGLGG 43
           +L KGG A+DA    + L +     +S+G GG
Sbjct: 21 KVLSKGGKALDAVEKGVRLVEDDPTERSVGYGG 53


>d1e25a_ e.3.1.1 (A:) beta-Lactamase, class A {Pseudomonas
          aeruginosa, PER-1 [TaxId: 287]}
          Length = 278

 Score = 24.1 bits (51), Expect = 9.6
 Identities = 5/23 (21%), Positives = 9/23 (39%)

Query: 49 LYNKTTGKAYAINAREKAPAAAT 71
          ++     +   IN  EK P  + 
Sbjct: 23 VWGPDDLEPLLINPFEKFPMQSV 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0458    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 566,469
Number of extensions: 24818
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 14
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.3 bits)