BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11447
         (360 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
          Length = 320

 Score = 28.9 bits (63), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 3/26 (11%)

Query: 24  SEYSLPVQNQQNDQH---RDLFSVHV 46
           SEYS+PV +   D+H   RDLFSV++
Sbjct: 129 SEYSVPVFDNMMDRHLVARDLFSVYM 154


>pdb|3NJR|A Chain A, Crystal Structure Of C-Terminal Domain Of Precorrin-6y
           C5,15- Methyltransferase From Rhodobacter Capsulatus
 pdb|3NJR|B Chain B, Crystal Structure Of C-Terminal Domain Of Precorrin-6y
           C5,15- Methyltransferase From Rhodobacter Capsulatus
          Length = 204

 Score = 28.1 bits (61), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 289 NLDRYGIAPRE---MGEALNAEAASVRAYAIFIGSLGDQA--KRLTQELPAGRGFVCMDL 343
           N+D YG++PR     G A  A A      A+FIG  G QA   RL + L  G   V   +
Sbjct: 96  NIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIVANAV 155

Query: 344 T 344
           T
Sbjct: 156 T 156


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,128,345
Number of Sequences: 62578
Number of extensions: 405641
Number of successful extensions: 1378
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1372
Number of HSP's gapped (non-prelim): 13
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)