Query psy11447
Match_columns 360
No_of_seqs 115 out of 133
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 18:43:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11447.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11447hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q0p_A Complement factor B; VO 98.0 5.2E-05 1.8E-09 65.2 12.4 152 199-357 43-219 (223)
2 2b2x_A Integrin alpha-1; compu 97.6 0.00016 5.6E-09 63.4 8.7 146 199-356 48-210 (223)
3 1mf7_A Integrin alpha M; cell 97.5 0.00018 6.1E-09 61.4 7.1 144 199-355 33-187 (194)
4 3ibs_A Conserved hypothetical 97.5 0.00074 2.5E-08 58.1 10.8 94 253-353 88-209 (218)
5 1rrk_A Complement factor B; BB 97.5 0.00064 2.2E-08 66.0 11.2 155 199-357 29-205 (497)
6 1ijb_A VON willebrand factor; 97.5 0.0027 9.2E-08 55.0 13.9 147 199-356 41-194 (202)
7 1v7p_C Integrin alpha-2; snake 97.3 0.0017 5.7E-08 55.8 11.1 146 199-356 32-194 (200)
8 3n2n_F Anthrax toxin receptor 97.3 0.00079 2.7E-08 56.3 8.8 144 199-356 34-183 (185)
9 1pt6_A Integrin alpha-1; cell 97.3 0.0005 1.7E-08 59.7 7.2 142 199-353 33-192 (213)
10 2odp_A Complement C2; C3/C5 co 97.2 0.0019 6.4E-08 63.1 11.0 150 199-357 37-213 (509)
11 4hqf_A Thrombospondin-related 97.1 0.008 2.7E-07 54.7 13.4 150 199-356 50-208 (281)
12 4fx5_A VON willebrand factor t 97.0 0.012 4E-07 58.9 15.2 140 210-357 115-257 (464)
13 1shu_X Anthrax toxin receptor 97.0 0.0077 2.6E-07 50.1 11.7 143 199-356 33-180 (182)
14 1n3y_A Integrin alpha-X; alpha 96.5 0.01 3.6E-07 50.1 8.7 102 252-356 81-192 (198)
15 3hrz_D Complement factor B; se 96.0 0.038 1.3E-06 56.3 11.0 151 199-356 271-446 (741)
16 3zqk_A VON willebrand factor; 95.9 0.064 2.2E-06 46.2 10.6 139 199-357 49-193 (199)
17 4hqo_A Sporozoite surface prot 95.7 0.075 2.6E-06 48.2 10.8 148 199-355 47-204 (266)
18 1mjn_A Integrin alpha-L; rossm 95.6 0.016 5.6E-07 49.1 5.5 137 199-354 30-176 (179)
19 1atz_A VON willebrand factor; 95.5 0.21 7.3E-06 42.1 12.3 138 199-350 33-177 (189)
20 2x5n_A SPRPN10, 26S proteasome 94.8 0.2 7E-06 44.1 10.5 131 211-357 47-184 (192)
21 2xgg_A Microneme protein 2; A/ 93.9 0.25 8.7E-06 41.5 8.6 115 199-323 45-164 (178)
22 4b4t_W RPN10, 26S proteasome r 90.1 0.37 1.3E-05 45.5 5.6 174 109-357 8-188 (268)
23 3rag_A Uncharacterized protein 87.0 2.6 8.8E-05 39.5 9.0 73 277-354 8-87 (242)
24 3k6s_A Integrin alpha-X; cell 81.7 0.94 3.2E-05 50.0 4.0 144 199-355 158-312 (1095)
25 2x31_A Magnesium-chelatase 60 78.0 7.4 0.00025 32.3 7.6 64 254-320 77-151 (189)
26 3grc_A Sensor protein, kinase; 76.8 23 0.00077 27.0 10.1 108 236-354 15-125 (140)
27 1jey_B KU80; double-strand DNA 64.5 69 0.0023 32.4 12.4 77 241-321 89-170 (565)
28 1ugj_A Riken cDNA 2310057J16 p 64.2 12 0.00042 32.5 5.9 45 241-290 21-65 (141)
29 3t6k_A Response regulator rece 63.9 27 0.00092 26.9 7.4 107 236-354 13-122 (136)
30 3eod_A Protein HNR; response r 63.0 29 0.00099 26.0 7.3 110 236-359 16-129 (130)
31 2rjn_A Response regulator rece 59.8 19 0.00066 28.1 6.0 105 236-354 16-124 (154)
32 3lte_A Response regulator; str 59.4 52 0.0018 24.5 8.2 93 236-341 15-108 (132)
33 2rdm_A Response regulator rece 58.4 26 0.00089 26.2 6.3 107 236-355 14-122 (132)
34 1jey_A KU70; double-strand DNA 57.2 49 0.0017 33.9 10.0 84 236-322 112-209 (609)
35 3hv2_A Response regulator/HD d 56.0 16 0.00055 28.6 4.9 105 236-354 23-131 (153)
36 2r25_B Osmosensing histidine p 55.6 66 0.0023 24.5 8.6 68 281-353 53-124 (133)
37 3crn_A Response regulator rece 55.4 54 0.0018 24.8 7.8 105 236-354 12-119 (132)
38 2otd_A Glycerophosphodiester p 54.3 7.8 0.00027 34.5 3.1 36 257-293 21-61 (247)
39 3kht_A Response regulator; PSI 53.1 46 0.0016 25.5 7.0 109 236-354 14-126 (144)
40 2ww8_A RRGA, cell WALL surface 51.4 40 0.0014 36.7 8.5 56 233-288 324-388 (893)
41 3gl9_A Response regulator; bet 50.9 75 0.0026 23.8 8.0 95 236-342 11-106 (122)
42 3nhm_A Response regulator; pro 50.7 64 0.0022 24.0 7.4 106 236-355 13-121 (133)
43 3gt7_A Sensor protein; structu 49.3 40 0.0014 26.5 6.3 108 236-355 16-126 (154)
44 3c3m_A Response regulator rece 49.0 43 0.0015 25.6 6.3 107 236-354 12-121 (138)
45 1yvr_A RO autoantigen, 60-kDa 48.9 41 0.0014 33.6 7.7 102 238-353 429-533 (538)
46 2pl1_A Transcriptional regulat 48.1 68 0.0023 23.4 7.1 105 236-354 9-116 (121)
47 3h1g_A Chemotaxis protein CHEY 46.6 68 0.0023 24.1 7.0 107 236-354 14-125 (129)
48 2a9o_A Response regulator; ess 46.4 81 0.0028 22.8 7.6 104 236-354 10-116 (120)
49 3hdv_A Response regulator; PSI 45.0 96 0.0033 23.2 8.6 106 236-353 16-124 (136)
50 1dz3_A Stage 0 sporulation pro 45.0 94 0.0032 23.2 7.9 108 236-355 11-122 (130)
51 1dbw_A Transcriptional regulat 44.6 89 0.003 23.2 7.3 105 236-354 12-119 (126)
52 3heb_A Response regulator rece 44.6 1.1E+02 0.0036 23.6 8.5 115 235-353 12-132 (152)
53 3cfy_A Putative LUXO repressor 44.5 78 0.0027 24.2 7.2 104 237-354 14-120 (137)
54 3r0j_A Possible two component 43.7 83 0.0028 27.0 7.9 106 236-355 32-140 (250)
55 3mm4_A Histidine kinase homolo 43.1 60 0.0021 27.3 6.8 120 235-356 69-196 (206)
56 1p6q_A CHEY2; chemotaxis, sign 42.7 1E+02 0.0034 22.8 8.2 107 236-354 15-125 (129)
57 4e7p_A Response regulator; DNA 42.5 79 0.0027 24.4 7.0 104 236-354 29-138 (150)
58 3f6p_A Transcriptional regulat 42.1 76 0.0026 23.6 6.6 92 236-342 11-103 (120)
59 1p3d_A UDP-N-acetylmuramate--a 41.0 94 0.0032 30.3 8.7 144 193-346 307-462 (475)
60 2jk1_A HUPR, hydrogenase trans 40.7 95 0.0033 23.5 7.1 103 236-353 10-116 (139)
61 3lua_A Response regulator rece 40.4 41 0.0014 25.6 4.9 109 235-355 12-126 (140)
62 3kcn_A Adenylate cyclase homol 38.5 53 0.0018 25.5 5.4 105 236-354 13-121 (151)
63 3jte_A Response regulator rece 38.5 97 0.0033 23.4 6.8 107 236-354 12-121 (143)
64 1wxp_A THO complex subunit 1; 38.5 44 0.0015 26.8 4.9 52 11-82 37-88 (110)
65 4ew6_A D-galactose-1-dehydroge 38.2 26 0.00089 32.6 4.0 61 279-341 50-111 (330)
66 2nvo_A RO sixty-related protei 37.7 50 0.0017 33.3 6.3 104 238-353 425-529 (535)
67 3cz5_A Two-component response 37.4 1.2E+02 0.0042 23.3 7.4 106 236-354 14-123 (153)
68 1zgz_A Torcad operon transcrip 37.4 1.2E+02 0.0041 22.1 8.0 66 283-354 49-117 (122)
69 3eul_A Possible nitrate/nitrit 37.1 1.2E+02 0.0041 23.3 7.2 79 265-354 52-133 (152)
70 3i42_A Response regulator rece 37.1 30 0.001 25.8 3.6 79 236-325 12-90 (127)
71 1tmy_A CHEY protein, TMY; chem 36.8 1.2E+02 0.0041 22.0 7.4 91 236-341 11-104 (120)
72 3ch0_A Glycerophosphodiester p 36.7 25 0.00086 31.5 3.6 35 257-292 23-62 (272)
73 3f6c_A Positive transcription 36.3 56 0.0019 24.4 5.0 70 281-355 47-119 (134)
74 3kto_A Response regulator rece 35.9 53 0.0018 25.0 4.9 108 236-355 15-125 (136)
75 2qr3_A Two-component system re 35.6 1.1E+02 0.0039 22.8 6.7 106 236-353 12-123 (140)
76 3gbv_A Putative LACI-family tr 35.1 1.9E+02 0.0065 24.7 8.8 9 224-232 95-103 (304)
77 4dnd_A Syntaxin-10, SYN10; str 34.7 4.4 0.00015 34.5 -1.7 55 258-332 74-128 (130)
78 2qv0_A Protein MRKE; structura 33.1 1.2E+02 0.0041 22.9 6.5 103 236-355 18-126 (143)
79 1u9d_A Hypothetical protein VC 33.1 1E+02 0.0034 25.9 6.4 86 188-296 18-118 (122)
80 1jbe_A Chemotaxis protein CHEY 32.4 1.4E+02 0.0047 22.0 6.6 106 236-354 13-123 (128)
81 3l12_A Putative glycerophospho 32.0 25 0.00084 32.6 2.8 36 257-293 32-72 (313)
82 2gj2_A WSV230, VP9; ferredoxin 32.0 2.2 7.7E-05 34.3 -3.7 37 250-288 11-53 (85)
83 1srr_A SPO0F, sporulation resp 32.0 84 0.0029 23.2 5.3 92 236-341 12-104 (124)
84 3to5_A CHEY homolog; alpha(5)b 31.9 1.1E+02 0.0038 24.9 6.5 105 236-353 21-130 (134)
85 3dv9_A Beta-phosphoglucomutase 31.8 29 0.00098 28.7 2.9 75 261-356 169-243 (247)
86 3fcs_B Integrin beta-3; beta p 31.1 3.1E+02 0.011 28.9 11.2 91 259-356 222-350 (690)
87 1k66_A Phytochrome response re 31.0 1.7E+02 0.0057 21.9 7.2 73 280-355 62-137 (149)
88 1bm4_A Protein (moloney murine 30.8 17 0.00057 24.6 1.0 12 196-207 19-30 (32)
89 3a10_A Response regulator; pho 30.7 1.1E+02 0.0039 22.0 5.8 90 236-341 10-100 (116)
90 1o1z_A GDPD, glycerophosphodie 30.5 21 0.00073 31.7 2.0 36 257-293 27-67 (234)
91 3b2n_A Uncharacterized protein 30.1 1.7E+02 0.006 21.9 8.3 66 283-353 52-120 (133)
92 3hdg_A Uncharacterized protein 30.0 1.7E+02 0.0059 21.8 8.3 105 236-354 16-123 (137)
93 4hv4_A UDP-N-acetylmuramate--L 29.4 3.4E+02 0.012 26.7 10.6 152 193-354 311-479 (494)
94 2jba_A Phosphate regulon trans 29.3 81 0.0028 23.2 4.8 71 281-354 47-120 (127)
95 1xhf_A DYE resistance, aerobic 28.8 1.7E+02 0.0058 21.3 7.5 104 236-354 12-118 (123)
96 3cg4_A Response regulator rece 28.8 91 0.0031 23.5 5.1 106 236-353 16-124 (142)
97 1qkk_A DCTD, C4-dicarboxylate 27.1 99 0.0034 23.9 5.2 104 236-353 12-118 (155)
98 2zay_A Response regulator rece 27.0 83 0.0028 23.9 4.7 70 282-354 54-126 (147)
99 3ilh_A Two component response 26.8 2E+02 0.0068 21.5 8.4 110 236-353 18-136 (146)
100 1m65_A Hypothetical protein YC 26.1 62 0.0021 27.9 4.1 43 246-296 6-48 (245)
101 3eq2_A Probable two-component 26.0 1.2E+02 0.0041 28.1 6.4 105 236-354 14-122 (394)
102 3snk_A Response regulator CHEY 25.8 9.1 0.00031 29.3 -1.2 56 281-341 60-116 (135)
103 2qvg_A Two component response 25.4 2.1E+02 0.0073 21.4 10.0 99 236-341 16-118 (143)
104 2qzj_A Two-component response 25.4 1E+02 0.0035 23.5 4.9 104 236-354 13-119 (136)
105 1k68_A Phytochrome response re 24.9 2.1E+02 0.0071 21.0 8.1 114 236-355 11-130 (140)
106 3qxg_A Inorganic pyrophosphata 24.5 48 0.0016 27.7 3.0 71 262-353 171-241 (243)
107 2cyj_A Hypothetical protein PH 23.9 25 0.00086 29.1 1.1 45 295-345 48-96 (118)
108 1zh2_A KDP operon transcriptio 23.9 1.9E+02 0.0065 20.8 6.0 103 236-353 10-115 (121)
109 1zcc_A Glycerophosphodiester p 23.8 41 0.0014 30.0 2.6 36 257-293 16-56 (248)
110 2gkg_A Response regulator homo 23.0 2.1E+02 0.0073 20.5 6.9 107 236-354 14-123 (127)
111 1mb3_A Cell division response 22.0 1.5E+02 0.0052 21.5 5.1 95 236-342 10-105 (124)
112 3qvq_A Phosphodiesterase OLEI0 21.2 53 0.0018 29.3 2.8 35 257-292 24-63 (252)
113 3cu5_A Two component transcrip 21.2 1.6E+02 0.0054 22.5 5.3 67 283-354 52-121 (141)
114 3k4h_A Putative transcriptiona 21.1 1.9E+02 0.0066 24.7 6.3 43 299-345 182-231 (292)
115 1a04_A Nitrate/nitrite respons 21.1 2.9E+02 0.01 22.6 7.2 68 283-355 54-124 (215)
116 2bo9_A Carboxypeptidase A4; me 21.0 55 0.0019 30.2 3.0 39 196-234 16-55 (308)
117 3qze_A DHDPS, dihydrodipicolin 20.6 4.5E+02 0.015 24.5 9.2 114 212-341 61-208 (314)
118 1ydy_A Glycerophosphoryl diest 20.6 49 0.0017 31.2 2.5 36 257-293 45-85 (356)
119 3d4u_A Tafia, carboxypeptidase 20.6 56 0.0019 30.1 2.9 69 196-272 15-86 (309)
120 2b4a_A BH3024; flavodoxin-like 20.3 71 0.0024 24.1 3.0 106 216-342 8-115 (138)
121 1dcf_A ETR1 protein; beta-alph 20.1 2.8E+02 0.0094 20.7 6.5 106 236-354 16-127 (136)
No 1
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.05 E-value=5.2e-05 Score=65.23 Aligned_cols=152 Identities=13% Similarity=0.207 Sum_probs=86.3
Q ss_pred HHHHhhccccceeEeeeeccCCCCccccccCCCCCCCchHHHHHHHHHHHhhcc----ccCCcchHHHHHHHHHHHHhhc
Q psy11447 199 SLEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQF----CASGDYTLESIRASIQDLTTEC 274 (360)
Q Consensus 199 vMEaf~g~e~k~~ydivGHSGd~~~i~lV~~~~~Pk~~keRl~vl~~M~aH~Qf----c~sGD~Tlea~~~ai~~~a~~~ 274 (360)
+++.|..+...-+.-||.-|++... .+....|...+++. ++.....-++ +--|=+|-.|++.|.+.+....
T Consensus 43 ~i~~l~~~~~~~~v~lv~f~~~~~~--~~~~~~~~~~~~~~---~~~~i~~l~~~~~~~~g~T~~~~aL~~a~~~l~~~~ 117 (223)
T 1q0p_A 43 LIEKVASYGVKPRYGLVTYATYPKI--WVKVSEADSSNADW---VTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPD 117 (223)
T ss_dssp HHHHHHTTTCCCEEEEEEESSSEEE--EECTTSGGGGCHHH---HHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTT
T ss_pred HHHHHhcCCCCceEEEEEecCccce--eeccccCCCCCHHH---HHHHHHhcccccccCCCCccHHHHHHHHHHHhhccc
Confidence 6666766666667778887776533 23344444444332 2222233333 3467788999999999986431
Q ss_pred c------cCCCeEEEEEecCCccccCCChhHHHHHHhc-----------CcccccEEEEEecCch--HHHHHHHhhCCCC
Q psy11447 275 A------QHDDSILIVLSDANLDRYGIAPREMGEALNA-----------EAASVRAYAIFIGSLG--DQAKRLTQELPAG 335 (360)
Q Consensus 275 ~------daDe~fVivlSDANL~RYgI~p~~l~~~l~~-----------~~p~V~a~~IfIgslg--dqA~~l~~~Lp~G 335 (360)
. ..-..+||++||..-. .|..|....+.+.. ....|..|+|-||+-- ++-+.|+ ..|.|
T Consensus 118 ~~~~~~~~~~~~~iillTDG~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~~~~~~~L~~iA-~~~~G 195 (223)
T 1q0p_A 118 DVPPEGWNRTRHVIILMTDGLHN-MGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALA-SKKDN 195 (223)
T ss_dssp SSCCTTGGGCEEEEEEEECSCCC-SSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSCCCHHHHHHHS-CCCTT
T ss_pred cccccccccCCeEEEEECCCCCC-CCCChHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEecCcCCHHHHHHHh-cCCCC
Confidence 0 1245789999998654 34478777766632 2267999999999732 2344444 45668
Q ss_pred --ceEEecCCCchHHHHHHHHHhc
Q psy11447 336 --RGFVCMDLTEIPQILQQIFSAS 357 (360)
Q Consensus 336 --r~fv~~dt~~lP~il~qIf~s~ 357 (360)
+.|.+.|..+|+.++++|+..|
T Consensus 196 ~~~~~~~~~~~~L~~~~~~i~~~s 219 (223)
T 1q0p_A 196 EQHVFKVKDMENLEDVFYQMIDES 219 (223)
T ss_dssp CCCEEETTC---------------
T ss_pred CceEEEcCCHHHHHHHHHHHhccc
Confidence 9999999999999999998654
No 2
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=97.64 E-value=0.00016 Score=63.38 Aligned_cols=146 Identities=12% Similarity=0.127 Sum_probs=88.5
Q ss_pred HHHHhhccccceeEeeeeccCCCCc-cccccCCCCCCCchHHHHHHHHHHHhhccccCC--cchHHHHHHHHHHHHhh--
Q psy11447 199 SLEAFQDFDQRISLDIIGHSGETHS-IPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASG--DYTLESIRASIQDLTTE-- 273 (360)
Q Consensus 199 vMEaf~g~e~k~~ydivGHSGd~~~-i~lV~~~~~Pk~~keRl~vl~~M~aH~Qfc~sG--D~Tlea~~~ai~~~a~~-- 273 (360)
+++.|.-.....+.-+|.-|++... +|| ....+..+-++.+..| ++ ..| =+|-.|++.|.+.+-..
T Consensus 48 ~~~~l~~~~~~~rv~lv~F~~~~~~~~~l----~~~~~~~~~~~~i~~l----~~-~gG~~T~~~~aL~~a~~~l~~~~~ 118 (223)
T 2b2x_A 48 LLKRMDIGPKQTQVGIVQYGENVTHEFNL----NKYSSTEEVLVAANKI----VQ-RGGRQTMTALGIDTARKEAFTEAR 118 (223)
T ss_dssp HHTTSCCSTTSCCEEEEEESSSEEEEECT----TTCCSHHHHHHHHTTC----CC-CCCSSCCHHHHHHHHHHTTSSGGG
T ss_pred HHHhcccCCCCeEEEEEEeCCCccEEEec----CCCCCHHHHHHHHHhh----hc-cCCCCccHHHHHHHHHHHhcCccc
Confidence 4455542245667777777765432 233 1122323333333322 22 245 37789999999874321
Q ss_pred -cccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCchH-----------HHHHHHhhCCCCceEEec
Q psy11447 274 -CAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGD-----------QAKRLTQELPAGRGFVCM 341 (360)
Q Consensus 274 -~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgd-----------qA~~l~~~Lp~Gr~fv~~ 341 (360)
..+.-..+||+|||..=. .+..+...++.+.. ..|..|+|-||+-.+ +-+.|+..-..|+.|.+.
T Consensus 119 ~~~~~~~~~iillTDG~~~-~~~~~~~~~~~~~~--~gi~v~~igvG~~~~~~~~~~~~~~~~L~~iA~~p~~g~~~~~~ 195 (223)
T 2b2x_A 119 GARRGVKKVMVIVTDGESH-DNYRLKQVIQDCED--ENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVS 195 (223)
T ss_dssp TCCTTSEEEEEEEESSCCT-TGGGHHHHHHHHHT--TTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEES
T ss_pred CCCCCCCeEEEEEcCCCCC-CCccHHHHHHHHHH--CCCEEEEEEecCccccccccchhHHHHHHHHhCCCchhcEEEeC
Confidence 002345899999997643 45567777777764 689999999987432 222333221248999999
Q ss_pred CCCchHHHHHHHHHh
Q psy11447 342 DLTEIPQILQQIFSA 356 (360)
Q Consensus 342 dt~~lP~il~qIf~s 356 (360)
|..+|+.++++|-..
T Consensus 196 ~~~~L~~i~~~i~~~ 210 (223)
T 2b2x_A 196 DELALVTIVKALGER 210 (223)
T ss_dssp STTGGGGGHHHHHTT
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988543
No 3
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=97.52 E-value=0.00018 Score=61.37 Aligned_cols=144 Identities=14% Similarity=0.172 Sum_probs=89.4
Q ss_pred HHHHhhccccceeEeeeeccCCCCc-cccccCCCCCCCchHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcc--
Q psy11447 199 SLEAFQDFDQRISLDIIGHSGETHS-IPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECA-- 275 (360)
Q Consensus 199 vMEaf~g~e~k~~ydivGHSGd~~~-i~lV~~~~~Pk~~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~-- 275 (360)
+++.|. ....++-++.-|++... +||-.. ..+-++ +.....-++.-.|=+|-.|++.|.+.+.....
T Consensus 33 ~~~~l~--~~~~~v~vv~f~~~~~~~~~l~~~-------~~~~~~-~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~~~ 102 (194)
T 1mf7_A 33 VMEQLK--KSKTLFSLMQYSEEFRIHFTFKEF-------QNNPNP-RSLVKPITQLLGRTHTATGIRKVVRELFNITNGA 102 (194)
T ss_dssp HHHHHC--CTTEEEEEEEESSSEEEEECHHHH-------HHSCCH-HHHHTTCCCCCSCBCHHHHHHHHHHTTTSGGGTC
T ss_pred HHHhcC--CCCeEEEEEEecCCceEEEecCCc-------CCHHHH-HHHHHhCcCCCCCchHHHHHHHHHHHhcCcccCC
Confidence 566665 56777888888766432 222211 111111 12222233444567778999999987742100
Q ss_pred -cCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCch------HHHHHHHhhCC-CCceEEecCCCchH
Q psy11447 276 -QHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLG------DQAKRLTQELP-AGRGFVCMDLTEIP 347 (360)
Q Consensus 276 -daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslg------dqA~~l~~~Lp-~Gr~fv~~dt~~lP 347 (360)
+.-..+||+|||..-.--..++.+.++.+.. ..|..|+|-||+-- ++-..|+.. | .|+.|...|..+|+
T Consensus 103 r~~~~~~iillTDG~~~~d~~~~~~~~~~~~~--~gi~v~~igvG~~~~~~~~~~~L~~iA~~-~~~~~~~~~~~~~~l~ 179 (194)
T 1mf7_A 103 RKNAFKILVVITDGEKFGDPLGYEDVIPEADR--EGVIRYVIGVGDAFRSEKSRQELNTIASK-PPRDHVFQVNNFEALK 179 (194)
T ss_dssp CTTSEEEEEEEESSCCBSCSSCGGGTHHHHHH--TTEEEEEEEESGGGCSHHHHHHHHHHSCS-SHHHHEEEESSGGGGG
T ss_pred CCCCCeEEEEEcCCCCCCCchhhHHHHHHHHH--CCCEEEEEEecccccccccHHHHHHHhCC-CCcccEEEeCCHHHHH
Confidence 1124799999998765223445666666654 68999999999854 334445443 4 37889999999999
Q ss_pred HHHHHHHH
Q psy11447 348 QILQQIFS 355 (360)
Q Consensus 348 ~il~qIf~ 355 (360)
.++++|-.
T Consensus 180 ~~~~~i~~ 187 (194)
T 1mf7_A 180 TIQNQLRE 187 (194)
T ss_dssp GGHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 4
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=97.50 E-value=0.00074 Score=58.10 Aligned_cols=94 Identities=16% Similarity=0.187 Sum_probs=68.2
Q ss_pred ccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCc-----------
Q psy11447 253 CASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSL----------- 321 (360)
Q Consensus 253 c~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgsl----------- 321 (360)
...|=++-.|++.|.+.+... ..-...||+|||..-. .+ .+....+.+.. ..|..|+|-||+-
T Consensus 88 ~~g~T~l~~al~~a~~~l~~~--~~~~~~ivllTDG~~~-~~-~~~~~~~~~~~--~~i~v~~igig~~~~~~~~~~g~~ 161 (218)
T 3ibs_A 88 SKQGTAIGEAINLATRSFTPQ--EGVGRAIIVITDGENH-EG-GAVEAAKAAAE--KGIQVSVLGVGMPEGAPIPVEGTN 161 (218)
T ss_dssp CSCSCCHHHHHHHHHTTSCSC--SSCCEEEEEEECCTTC-CS-CHHHHHHHHHT--TTEEEEEEEESCTTCEECBCTTSS
T ss_pred CCCCCcHHHHHHHHHHHHhhC--CCCCcEEEEEcCCCCC-CC-cHHHHHHHHHh--cCCEEEEEEecCCCCCcccccCCC
Confidence 456677899999999887654 4566899999998543 33 68888888866 6899999999972
Q ss_pred ----------------hHHHHHHHhhCCCCceEEecC-CCchHHHHHHH
Q psy11447 322 ----------------GDQAKRLTQELPAGRGFVCMD-LTEIPQILQQI 353 (360)
Q Consensus 322 ----------------gdqA~~l~~~Lp~Gr~fv~~d-t~~lP~il~qI 353 (360)
-+.-+.|++.- .|+.|.+.+ ...++++++.|
T Consensus 162 ~~~~~~~g~~~~~~~~~~~L~~iA~~~-gG~~~~~~~~~~~~~~~~~~i 209 (218)
T 3ibs_A 162 DYRRDREGNVIVTRLNEGMCQEIAKDG-KGIYVRVDNSNSAQKAISQEI 209 (218)
T ss_dssp CBCBCTTSCBCEECCCHHHHHHHHHHT-EEEEEEECSSSHHHHHHHHHH
T ss_pred ceeEcCCCCEeEecCCHHHHHHHHHhc-CCEEEECCCChHHHHHHHHHH
Confidence 23456676665 588888888 45556665554
No 5
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=97.47 E-value=0.00064 Score=65.97 Aligned_cols=155 Identities=12% Similarity=0.164 Sum_probs=97.2
Q ss_pred HHHHhhccccceeEeeeeccCCCCccccccCCCCCCCchHHH-HHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcc--
Q psy11447 199 SLEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRL-EVIKIMHAHAQFCASGDYTLESIRASIQDLTTECA-- 275 (360)
Q Consensus 199 vMEaf~g~e~k~~ydivGHSGd~~~i~lV~~~~~Pk~~keRl-~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~-- 275 (360)
+++.|.......+.-||.-|++... .+....|+..+++.+ +.|..+.......-.|=+|-.|++.|.+.+.....
T Consensus 29 ~~~~l~~~~~~~~v~lv~f~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~g~T~~~~al~~a~~~l~~~~~~~ 106 (497)
T 1rrk_A 29 LIEKVASYGVKPRYGLVTYATYPKI--WVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVP 106 (497)
T ss_dssp HHHHHHHTTCCCEEEEEEESSSEEE--EECTTSGGGGCHHHHHHHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC----
T ss_pred HHHHhhccCCCceEEEEEecCCceE--eeccccccccCHHHHHHHHHhCcCccccccCccCHHHHHHHHHHHhhhhhccc
Confidence 6666666666777788877765432 223344544444332 22333322111133466779999999998842200
Q ss_pred ----cCCCeEEEEEecCCccccCCChhHHHHHHhcC-----------cccccEEEEEecCch--HHHHHHHhhCCCC--c
Q psy11447 276 ----QHDDSILIVLSDANLDRYGIAPREMGEALNAE-----------AASVRAYAIFIGSLG--DQAKRLTQELPAG--R 336 (360)
Q Consensus 276 ----daDe~fVivlSDANL~RYgI~p~~l~~~l~~~-----------~p~V~a~~IfIgslg--dqA~~l~~~Lp~G--r 336 (360)
..-...||+|||..= ..|..|...++.+... ...|..|+|=||+-- .+-+.|+. .|.| +
T Consensus 107 ~~~~~~~~~~iillTDG~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~igvG~~~~~~~L~~iA~-~~~g~~~ 184 (497)
T 1rrk_A 107 PEGWNRTRHVIILMTDGLH-NMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS-KKDNEQH 184 (497)
T ss_dssp --CGGGCEEEEEEEECSCC-CSSSCTHHHHHHHHHHTTCSSCC-CCCGGGEEEEEEECSSSCCHHHHHHHSC-CCTTCCC
T ss_pred cccccccceEEEEEeCCCc-ccCCChhHHHHHHHHHhhhhcccccchhcCeeEEEecCCCccCHHHHHHHhc-CCCCcce
Confidence 113479999999843 2455788777766432 137899999999733 33345554 4568 9
Q ss_pred eEEecCCCchHHHHHHHHHhc
Q psy11447 337 GFVCMDLTEIPQILQQIFSAS 357 (360)
Q Consensus 337 ~fv~~dt~~lP~il~qIf~s~ 357 (360)
.|...|..+|++++++++..+
T Consensus 185 ~~~~~~~~~l~~~~~~~i~~~ 205 (497)
T 1rrk_A 185 VCKVKDMECLEDVFYQMIDES 205 (497)
T ss_dssp EEETTCHHHHHHHHHHHSCGG
T ss_pred EEEeCCHHHHhhhhhhcccCC
Confidence 999999999999999887654
No 6
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=97.46 E-value=0.0027 Score=55.01 Aligned_cols=147 Identities=14% Similarity=0.218 Sum_probs=91.1
Q ss_pred HHHHhhccccceeEeeeeccCCCCc-cccccCCCCCCCchHHHHHHHHHHHhhccccCC--cchHHHHHHHHHHHHhh-c
Q psy11447 199 SLEAFQDFDQRISLDIIGHSGETHS-IPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASG--DYTLESIRASIQDLTTE-C 274 (360)
Q Consensus 199 vMEaf~g~e~k~~ydivGHSGd~~~-i~lV~~~~~Pk~~keRl~vl~~M~aH~Qfc~sG--D~Tlea~~~ai~~~a~~-~ 274 (360)
+++.|.-.....+.-||.-|++... +||-. . ++++ .+ +....--+|. .| =+|-.|.+.|.+++-.. .
T Consensus 41 ~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~~----~-~~~~--~~-~~~i~~l~~~-gg~~T~~~~aL~~a~~~~~~~~~ 111 (202)
T 1ijb_A 41 MMERLRVSQKWVRVAVVEYHDGSHAYIGLKD----R-KRPS--EL-RRIASQVKYA-GSQVASTSEVLKYTLFQIFSKID 111 (202)
T ss_dssp HHHTBCBSTTSEEEEEEEESSSEEEEECTTC----C-CCHH--HH-HHHHHTCCCC-CBSCCCHHHHHHHHHHHTSSSCS
T ss_pred HHHhcccCCCceEEEEEEECCCceEEEecCC----C-CCHH--HH-HHHHHhCcCC-CCCcCcHHHHHHHHHHHHhccCC
Confidence 5555543345667778887766432 22221 1 2332 22 2222233442 33 36789999999886321 0
Q ss_pred ccCCCeEEEEEecCCcccc-CCChhHHHHHHhcCcccccEEEEEecCch--HHHHHHHhhCCCCceEEecCCCchHHHHH
Q psy11447 275 AQHDDSILIVLSDANLDRY-GIAPREMGEALNAEAASVRAYAIFIGSLG--DQAKRLTQELPAGRGFVCMDLTEIPQILQ 351 (360)
Q Consensus 275 ~daDe~fVivlSDANL~RY-gI~p~~l~~~l~~~~p~V~a~~IfIgslg--dqA~~l~~~Lp~Gr~fv~~dt~~lP~il~ 351 (360)
-..-..+||+|||-.=..- .-.+.+.++.|.. ..|..|+|=||+-- ++-++|+..-..|+.|...|.++|+.+++
T Consensus 112 r~~~~~~iillTDG~~~~~~~~~~~~~a~~l~~--~gi~i~~igvG~~~~~~~L~~iA~~~~~~~~~~~~~~~~L~~~~~ 189 (202)
T 1ijb_A 112 RPEASRIALLLMASQEPQRMSRNFVRYVQGLKK--KKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRD 189 (202)
T ss_dssp CTTSEEEEEEEECCCCCGGGCTTHHHHHHHHHH--TTEEEEEEEESTTSCHHHHHHHHHHCTTCCCEEESSGGGHHHHHH
T ss_pred CCCCCeEEEEEccCCCCccchHHHHHHHHHHHH--CCCEEEEEecCCcCCHHHHHHHhCCCCcccEEEeCCHHHHHHHHH
Confidence 0223579999999764321 1245556666654 68999999999732 45566776544689999999999999999
Q ss_pred HHHHh
Q psy11447 352 QIFSA 356 (360)
Q Consensus 352 qIf~s 356 (360)
+|...
T Consensus 190 ~i~~~ 194 (202)
T 1ijb_A 190 EIVSY 194 (202)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 7
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=97.35 E-value=0.0017 Score=55.83 Aligned_cols=146 Identities=10% Similarity=0.136 Sum_probs=88.5
Q ss_pred HHHHhhccccceeEeeeeccCCCCccccccCCCCCCCchHHHHHHHHHHHhhccccCC--cchHHHHHHHHHHHHhhc--
Q psy11447 199 SLEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASG--DYTLESIRASIQDLTTEC-- 274 (360)
Q Consensus 199 vMEaf~g~e~k~~ydivGHSGd~~~i~lV~~~~~Pk~~keRl~vl~~M~aH~Qfc~sG--D~Tlea~~~ai~~~a~~~-- 274 (360)
+++.|.-.....+.-+|.-|++... .++.. ...+.++-++.+..| ++ ..| =+|-.|++.|.+.+-...
T Consensus 32 ~~~~l~~~~~~~rvglv~f~~~~~~--~~~l~-~~~~~~~~~~~i~~l----~~-~~G~~T~~~~al~~a~~~~~~~~~g 103 (200)
T 1v7p_C 32 FVQGLDIGPTKTQVGLIQYANNPRV--VFNLN-TYKTKEEMIVATSQT----SQ-YGGDLTNTFGAIQYARKYAYSAASG 103 (200)
T ss_dssp HHHTSCBSTTSEEEEEEEESSSEEE--EECTT-TCSSHHHHHHHHHHC----CC-CCCSCCCHHHHHHHHHHHTTSGGGT
T ss_pred HHHhcCCCCCceEEEEEEECCCceE--EEeCC-CcCCHHHHHHHHHhh----hc-cCCCCCcHHHHHHHHHHhhcccccC
Confidence 5555553356778888888876432 12222 122222333333333 22 234 577899999998753210
Q ss_pred -ccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCc--h---------HHHHHHHhhCCCCc-eEEec
Q psy11447 275 -AQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSL--G---------DQAKRLTQELPAGR-GFVCM 341 (360)
Q Consensus 275 -~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgsl--g---------dqA~~l~~~Lp~Gr-~fv~~ 341 (360)
-+.-..+||+|||..=. .+..+.+.++.+.. ..|..|+|-||.- | ++-+.|+. -|.|+ .|...
T Consensus 104 ~r~~~~~~ivllTDG~~~-~~~~~~~~~~~~~~--~gi~i~~igvg~~~~~~~~~~~~~~~~L~~iA~-~~~g~~~~~~~ 179 (200)
T 1v7p_C 104 GRRSATKVMVVVTDGESH-DGSMLKAVIDQCNH--DNILRFGIAVLGYLNRNALDTKNLIKEIKAIAS-IPTERYFFNVS 179 (200)
T ss_dssp CCTTSEEEEEEEESSCCS-CGGGHHHHHHHHHH--TTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSC-SSHHHHEEEES
T ss_pred CCCCCCeEEEEEccCCCC-CcccHHHHHHHHHH--CCCEEEEEEecccccccccchhhHHHHHHHHhC-CccHhcEEEcC
Confidence 02235789999998654 55667777777765 6899999999542 1 22223332 34444 58899
Q ss_pred CCCchHHHHHHHHHh
Q psy11447 342 DLTEIPQILQQIFSA 356 (360)
Q Consensus 342 dt~~lP~il~qIf~s 356 (360)
|..+|+.++++|-..
T Consensus 180 ~~~~l~~i~~~i~~~ 194 (200)
T 1v7p_C 180 DEAALLEKAGTLGEQ 194 (200)
T ss_dssp SSGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999988643
No 8
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=97.34 E-value=0.00079 Score=56.30 Aligned_cols=144 Identities=13% Similarity=0.241 Sum_probs=86.2
Q ss_pred HHHHhhccccceeEeeeeccCCCCccccccCCCCCCCchHHH-HHHHHHHHhhccccCCcchHHHHHHHHHHHHhhc--c
Q psy11447 199 SLEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRL-EVIKIMHAHAQFCASGDYTLESIRASIQDLTTEC--A 275 (360)
Q Consensus 199 vMEaf~g~e~k~~ydivGHSGd~~~i~lV~~~~~Pk~~keRl-~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~--~ 275 (360)
+++.| .....+.-||.=|++...+ + |++++++.+ +.+..+.. .+.--|=+|-.|++.|.+.+.... .
T Consensus 34 ~~~~~--~~~~~~v~lv~f~~~~~~~--~----~l~~~~~~~~~~i~~l~~--~~~~g~T~~~~al~~a~~~l~~~~~~~ 103 (185)
T 3n2n_F 34 LAHKF--ISPQLRMSFIVFSTRGTTL--M----KLTEDREQIRQGLEELQK--VLPGGDTYMHEGFERASEQIYYENRQG 103 (185)
T ss_dssp HHHHC--CCTTEEEEEEEESSSEEEE--E----EEECCHHHHHHHHHHHHT--CCCCSCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHh--CCCCcEEEEEEEecCceEE--e----ccCCCHHHHHHHHHHHhh--hcCCCCccHHHHHHHHHHHHhhccccC
Confidence 45555 2235666666666544321 1 223343332 33444331 144556677999999999884320 0
Q ss_pred cCCCeEEEEEecCCccccCC-ChhHHHHHHhcCcccccEEEEEecCchH-HHHHHHhhCCCCceEEecC-CCchHHHHHH
Q psy11447 276 QHDDSILIVLSDANLDRYGI-APREMGEALNAEAASVRAYAIFIGSLGD-QAKRLTQELPAGRGFVCMD-LTEIPQILQQ 352 (360)
Q Consensus 276 daDe~fVivlSDANL~RYgI-~p~~l~~~l~~~~p~V~a~~IfIgslgd-qA~~l~~~Lp~Gr~fv~~d-t~~lP~il~q 352 (360)
..-..+||+|||..-..... .|...++.+.. ..|..|+|-||.... +-..|+. -| |+.|...| .++||.++++
T Consensus 104 ~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~--~gi~i~~igvg~~~~~~L~~iA~-~~-~~~~~~~~~~~~L~~~~~~ 179 (185)
T 3n2n_F 104 YRTASVIIALTDGELHEDLFFYSEREANRSRD--LGAIVYAVGVKDFNETQLARIAD-SK-DHVFPVNDGFQALQGIIHS 179 (185)
T ss_dssp BCEEEEEEEEECCCCCHHHHHHHHHHHHHHHH--TTEEEEEEECSSCCHHHHTTTSS-SG-GGEEEHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCCCcccchHHHHHHHHH--CCCEEEEEEeccCCHHHHHHHhC-CC-CCeEEeccHHHHHHHHHHH
Confidence 12357999999976532111 23556666655 679999999985322 2223332 24 99999998 9999999999
Q ss_pred HHHh
Q psy11447 353 IFSA 356 (360)
Q Consensus 353 If~s 356 (360)
|...
T Consensus 180 i~~~ 183 (185)
T 3n2n_F 180 ILKK 183 (185)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9764
No 9
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=97.29 E-value=0.0005 Score=59.74 Aligned_cols=142 Identities=13% Similarity=0.159 Sum_probs=86.5
Q ss_pred HHHHhhccccceeEeeeeccCCCCc-cccccCCCCCCCchHHHHHHHHHHHhhccccCCc--chHHHHHHHHHHHHhhc-
Q psy11447 199 SLEAFQDFDQRISLDIIGHSGETHS-IPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGD--YTLESIRASIQDLTTEC- 274 (360)
Q Consensus 199 vMEaf~g~e~k~~ydivGHSGd~~~-i~lV~~~~~Pk~~keRl~vl~~M~aH~Qfc~sGD--~Tlea~~~ai~~~a~~~- 274 (360)
+++.|.-.....+.-+|.-|++... +|| ....+.+ ++++.+.. -++ ..|. +|-.|++.|.+.+-...
T Consensus 33 ~~~~l~~~~~~~~v~lv~F~~~~~~~~~l----~~~~~~~---~~~~~i~~-l~~-~~G~~T~~~~aL~~a~~~l~~~~~ 103 (213)
T 1pt6_A 33 LLKRMDIGPKQTQVGIVQYGENVTHEFNL----NKYSSTE---EVLVAAKK-IVQ-RGGRQTMTALGTDTARKEAFTEAR 103 (213)
T ss_dssp HHTTSCBSTTSBEEEEEEESSSEEEEECT----TTCSSHH---HHHHHHHT-CCC-CCCSSCCHHHHHHHHHHTTTSGGG
T ss_pred HHHhcCCCCCCeEEEEEEeCCCccEEEec----cccCCHH---HHHHHHHh-ccC-CCCCcccHHHHHHHHHHHhcCccc
Confidence 4455543356777788888776432 233 1122222 33333321 122 2343 77899999998752210
Q ss_pred --ccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCchH-----------HHHHHHhhCC-CCceEEe
Q psy11447 275 --AQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGD-----------QAKRLTQELP-AGRGFVC 340 (360)
Q Consensus 275 --~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgd-----------qA~~l~~~Lp-~Gr~fv~ 340 (360)
.+.-..+||+|||..=. .+..|...++.+.. ..|..|+|-||+-.+ +-..|+.. | .|+.|..
T Consensus 104 ~~r~~~~~~iillTDG~~~-~~~~~~~~~~~~~~--~gi~i~~igig~~~~~~~~~~~~~~~~L~~iA~~-~~~g~~~~~ 179 (213)
T 1pt6_A 104 GARRGVKKVMVIVTDGESH-DNHRLKKVIQDCED--ENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASE-PTEKHFFNV 179 (213)
T ss_dssp TCCTTCEEEEEEEESSCCS-CSHHHHHHHHHHHH--TTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCS-SHHHHEEEE
T ss_pred CCCCCCCeEEEEEcCCCCC-CCccHHHHHHHHHH--CCCEEEEEEeccccccccccchhhHHHHHHHhCC-CchhcEEEe
Confidence 02346899999998533 44456777777765 579999999987322 22334333 3 3788999
Q ss_pred cCCCchHHHHHHH
Q psy11447 341 MDLTEIPQILQQI 353 (360)
Q Consensus 341 ~dt~~lP~il~qI 353 (360)
.|..+|+.++++|
T Consensus 180 ~~~~~l~~i~~~l 192 (213)
T 1pt6_A 180 SDELALVTIVKTL 192 (213)
T ss_dssp SSGGGGGGGHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999885
No 10
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=97.20 E-value=0.0019 Score=63.14 Aligned_cols=150 Identities=17% Similarity=0.299 Sum_probs=98.2
Q ss_pred HHHHhhccccceeEeeeeccCCCCc-cccccCCCCCCCchHHHHHHHHHHHhhcccc----CCcchHHHHHHHHHHHHhh
Q psy11447 199 SLEAFQDFDQRISLDIIGHSGETHS-IPFVTSNNLPRDNKQRLEVIKIMHAHAQFCA----SGDYTLESIRASIQDLTTE 273 (360)
Q Consensus 199 vMEaf~g~e~k~~ydivGHSGd~~~-i~lV~~~~~Pk~~keRl~vl~~M~aH~Qfc~----sGD~Tlea~~~ai~~~a~~ 273 (360)
+++.|..+....+.-||.-|++... +|| ..+...++ -. ++.....-++-. .|-+|-+|++.|.+.+...
T Consensus 37 l~~~l~~~~~~~rv~lv~f~~~~~~~~~l---~~~~~~~~--~~-~~~~l~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~ 110 (509)
T 2odp_A 37 MVDRIFSFEINVSVAIITFASEPKVLMSV---LNDNSRDM--TE-VISSLENANYKDHENGTGTNTYAALNSVYLMMNNQ 110 (509)
T ss_dssp HHHHHHTTCCCEEEEEEEESSSEEEEECT---TSGGGGCH--HH-HHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCCceEEEEEccCCCceeEec---cCCCCCCH--HH-HHHHHHhcccccCCCCCCccHHHHHHHHHHHHhhc
Confidence 6677766667788888888776543 223 22222222 22 233334455553 7889999999999988532
Q ss_pred ccc---------CCCeEEEEEecCCccccCCChhHHHHHHhc--------CcccccEEEEEecCc--h-HHHHHHHhhCC
Q psy11447 274 CAQ---------HDDSILIVLSDANLDRYGIAPREMGEALNA--------EAASVRAYAIFIGSL--G-DQAKRLTQELP 333 (360)
Q Consensus 274 ~~d---------aDe~fVivlSDANL~RYgI~p~~l~~~l~~--------~~p~V~a~~IfIgsl--g-dqA~~l~~~Lp 333 (360)
... .-...||+|||-.-. .|-.|...++.+.. + ..|.-|+|=||+- . ++-+.|+. .+
T Consensus 111 ~~~~~~~~~~~~~~~~~iillTDG~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~~iGvG~~~~~~~~L~~iA~-~~ 187 (509)
T 2odp_A 111 MRLLGMETMAWQEIRHAIILLTDGKSN-MGGSPKTAVDHIREILNINQKRN-DYLDIYAIGVGKLDVDWRELNELGS-KK 187 (509)
T ss_dssp HHHHCTTSHHHHTEEEEEEEESCSCCC-SSSCTHHHHHHHHHHTTCCSTTG-GGEEEEEEEESSSCCCHHHHHHHSC-CC
T ss_pred ccccccccccccccceEEEEECCCCcc-CCCChhHHHHHHHHHhhcccccc-CceEEEEEEcCCCcccHHHHHhhcc-CC
Confidence 100 123789999998532 35678777777763 4 7899999999983 2 23344444 45
Q ss_pred CCc--eEEecCCCchHHHHHHHHHhc
Q psy11447 334 AGR--GFVCMDLTEIPQILQQIFSAS 357 (360)
Q Consensus 334 ~Gr--~fv~~dt~~lP~il~qIf~s~ 357 (360)
.|+ .|...|..+|++++++|+.++
T Consensus 188 ~G~~~~~~~~~~~~l~~~~~~i~~~~ 213 (509)
T 2odp_A 188 DGERHAFILQDTKALHQVFEHMLDVS 213 (509)
T ss_dssp TTCCCEEEESSHHHHHHHHHHHEECT
T ss_pred CCceeeEEecCHHHHHHHHHhhhccc
Confidence 676 999999999999999997654
No 11
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=97.09 E-value=0.008 Score=54.74 Aligned_cols=150 Identities=14% Similarity=0.149 Sum_probs=94.5
Q ss_pred HHHHhhccccceeEeeeeccCCCCccccccCCCCCCCchHH-HHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccC
Q psy11447 199 SLEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQR-LEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQH 277 (360)
Q Consensus 199 vMEaf~g~e~k~~ydivGHSGd~~~i~lV~~~~~Pk~~keR-l~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~da 277 (360)
+++.|.-.......-||.-|++... .+........+++. ++.|..|.+ ..|-.-|=+|-.|++.|.+.+... ..
T Consensus 50 ~v~~l~~~~~~~rvglv~Fs~~~~~--~~~l~~~~~~~~~~l~~~i~~l~~-~~~~~G~T~~~~aL~~a~~~l~~~--~~ 124 (281)
T 4hqf_A 50 LIQQLNLNDNAIHLYASVFSNNARE--IIRLHSDASKNKEKALIIIKSLLS-TNLPYGKTSLTDALLQVRKHLNDR--IN 124 (281)
T ss_dssp HHTTCCCCTTSEEEEEEEEETTEEE--EEEECSSCSSCHHHHHHHHHHHHH-TTGGGCSCCHHHHHHHHHHHHHTS--CC
T ss_pred HHHHhccCCCCcEEEEEEcCCCceE--EEEccccCccCHHHHHHHHHHHhh-ccCCCCCccHHHHHHHHHHHHHhc--cC
Confidence 4555554455677778887776532 22223322233433 345566654 234445667899999998888643 22
Q ss_pred ---CCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCchHHH--HHHHhhCCC---CceEEecCCCchHHH
Q psy11447 278 ---DDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQA--KRLTQELPA---GRGFVCMDLTEIPQI 349 (360)
Q Consensus 278 ---De~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgdqA--~~l~~~Lp~---Gr~fv~~dt~~lP~i 349 (360)
-..+||+|||..-.. +-.+.+.++.|.. ..|..|+|-||+--++. ..|+..=|. .+.|...|.++|+.+
T Consensus 125 r~~~~~~iillTDG~~~d-~~~~~~~~~~l~~--~gv~i~~igiG~~~~~~~L~~iA~~~~~~g~~~~~~~~~~~~L~~~ 201 (281)
T 4hqf_A 125 RENANQLVVILTDGIPDS-IQDSLKESRKLSD--RGVKIAVFGIGQGINVAFNRFLVGCHPSDGKCNLYADSAWENVKNV 201 (281)
T ss_dssp CTTCEEEEEEEESSCCSC-HHHHHHHHHHHHH--TTCEEEEEEESSSCCHHHHHHHTTSCSSSSCCTTEEEECGGGHHHH
T ss_pred CCCCCEEEEEEecCCCCC-cHHHHHHHHHHHH--CCCEEEEEeCCCccCHHHHHhhhCCCCCCCCCceEEecchhhhhcc
Confidence 368999999986542 1234444555553 68999999999843333 455554333 288999999999999
Q ss_pred HHHHHHh
Q psy11447 350 LQQIFSA 356 (360)
Q Consensus 350 l~qIf~s 356 (360)
++.|...
T Consensus 202 ~~~l~~~ 208 (281)
T 4hqf_A 202 IGPFMKA 208 (281)
T ss_dssp HHHHHHH
T ss_pred cCCcccc
Confidence 9887653
No 12
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=97.05 E-value=0.012 Score=58.91 Aligned_cols=140 Identities=13% Similarity=0.152 Sum_probs=92.8
Q ss_pred eeEeeeeccCCCCcc-ccccCCCCCCCchHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecC
Q psy11447 210 ISLDIIGHSGETHSI-PFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDA 288 (360)
Q Consensus 210 ~~ydivGHSGd~~~i-~lV~~~~~Pk~~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDA 288 (360)
-.+-||.=|++...+ |+ ..+-.|-+...+-.+.+.+-. -+ +.-|=++-.|++.|++.+... ......||+|||-
T Consensus 115 drv~lV~Fs~~a~~~~p~-t~~l~~~~~~~~~~l~~~I~~-L~-~~GgT~l~~aL~~A~~~l~~~--~~~~~~IILLTDG 189 (464)
T 4fx5_A 115 AFFAVVAGTEGARVVYPT-GGQLLRADYQSRAAAKEAVGR-LH-ANGGTAMGRWLAQAGRIFDTA--PSAIKHAILLTDG 189 (464)
T ss_dssp CEEEEEEESSSEEEEESS-SSSCEECSHHHHHHHHHHHHT-CC-CCSCCCHHHHHHHHHHHHTTC--TTSEEEEEEEESS
T ss_pred CEEEEEEEcCceEEEecC-CcccccCCHHHHHHHHHHHHc-CC-CCCCCcHHHHHHHHHHHHhcC--CCCCCEEEEEcCC
Confidence 345566666554332 21 000112234455555544432 12 455667789999999998754 5556899999998
Q ss_pred CccccCCChhHHHHHHhcCcccccEEEEEecCch--HHHHHHHhhCCCCceEEecCCCchHHHHHHHHHhc
Q psy11447 289 NLDRYGIAPREMGEALNAEAASVRAYAIFIGSLG--DQAKRLTQELPAGRGFVCMDLTEIPQILQQIFSAS 357 (360)
Q Consensus 289 NL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslg--dqA~~l~~~Lp~Gr~fv~~dt~~lP~il~qIf~s~ 357 (360)
.-. .-.|..+..++.....+|..|+|-||+-- +.-+.|...- .|+.|..-|..+|+.++++|+...
T Consensus 190 ~~~--~~~~~~l~~~~~a~~~~i~i~tiGiG~~~d~~~L~~IA~~t-gG~~~~v~d~~~L~~~f~~i~~~~ 257 (464)
T 4fx5_A 190 KDE--SETPADLARAIQSSIGNFTADCRGIGEDWEPKELRKIADAL-LGTVGIIRDPATLAEDFREMTAKS 257 (464)
T ss_dssp CCT--TSCHHHHHHHHHHHTTTCEEEEEEESSSSCHHHHHHHHHHT-TCCEEEESSGGGHHHHHHHHHHHH
T ss_pred CCC--CCChHHHHHHHHHhcCCCeEEEEEeCCccCHHHHHHHHHhC-CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 633 13567788888755578999999999743 3345666665 599999999999999999998764
No 13
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=97.03 E-value=0.0077 Score=50.10 Aligned_cols=143 Identities=14% Similarity=0.238 Sum_probs=83.5
Q ss_pred HHHHhhccccceeEeeeeccCCCCccccccCCCCCCCchHHH-HHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccC
Q psy11447 199 SLEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRL-EVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQH 277 (360)
Q Consensus 199 vMEaf~g~e~k~~ydivGHSGd~~~i~lV~~~~~Pk~~keRl-~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~da 277 (360)
++..|-+ ..-+.-++.-|++.... + |++.+++.+ +.+..+.. ...-.|=++-.|.+.|.+.+.......
T Consensus 33 ~~~~~~~--~~~~v~lv~f~~~~~~~--~----~~~~~~~~~~~~l~~l~~--~~~~g~T~~~~al~~a~~~l~~~~~~~ 102 (182)
T 1shu_X 33 LAERFVS--PEMRLSFIVFSSQATII--L----PLTGDRGKISKGLEDLKR--VSPVGETYIHEGLKLANEQIQKAGGLK 102 (182)
T ss_dssp HHHHCCC--TTEEEEEEEESSSEEEE--E----EEECCHHHHHHHHHHHHT--CCCCSCCCHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHhcC--CCceEEEEEeCCCceEE--E----CCCCCHHHHHHHHHhccc--CCCCCCchHHHHHHHHHHHHHhccCCC
Confidence 4555522 34555666665543321 1 222333332 33443331 123345567899999999986431134
Q ss_pred CCeEEEEEecCCccccCCCh--hHHHHHHhcCcccccEEEEEecCchHH-HHHHHhhCCCCceEEec-CCCchHHHHHHH
Q psy11447 278 DDSILIVLSDANLDRYGIAP--REMGEALNAEAASVRAYAIFIGSLGDQ-AKRLTQELPAGRGFVCM-DLTEIPQILQQI 353 (360)
Q Consensus 278 De~fVivlSDANL~RYgI~p--~~l~~~l~~~~p~V~a~~IfIgslgdq-A~~l~~~Lp~Gr~fv~~-dt~~lP~il~qI 353 (360)
-..+||+|||..-.. +.++ ...++.+.. ..|..|+|-||....+ -..|+ ..| |..|... |..+|+.++++|
T Consensus 103 ~~~~iiliTDG~~~~-~~~~~~~~~~~~~~~--~~i~i~~igvg~~~~~~L~~ia-~~~-~~~~~~~~~~~~L~~~~~~i 177 (182)
T 1shu_X 103 TSSIIIALTDGKLDG-LVPSYAEKEAKISRS--LGASVYCVGVLDFEQAQLERIA-DSK-EQVFPVKGGFQALKGIINSI 177 (182)
T ss_dssp SCEEEEEEECCCCCT-THHHHHHHHHHHHHH--TTCEEEEEECSSCCHHHHHHHS-SSG-GGEEESSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCcCC-CCchhHHHHHHHHHh--CCCEEEEEeCCcCCHHHHHHHh-CCC-CceEEccCCHHHHHHHHHHH
Confidence 568999999986432 2111 334444443 6899999999965433 33443 345 6677666 889999999998
Q ss_pred HHh
Q psy11447 354 FSA 356 (360)
Q Consensus 354 f~s 356 (360)
...
T Consensus 178 ~~~ 180 (182)
T 1shu_X 178 LAQ 180 (182)
T ss_dssp HHT
T ss_pred Hhc
Confidence 764
No 14
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=96.50 E-value=0.01 Score=50.10 Aligned_cols=102 Identities=20% Similarity=0.273 Sum_probs=73.1
Q ss_pred cccCCcchHHHHHHHHHHHHhhc---ccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCch------
Q psy11447 252 FCASGDYTLESIRASIQDLTTEC---AQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLG------ 322 (360)
Q Consensus 252 fc~sGD~Tlea~~~ai~~~a~~~---~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslg------ 322 (360)
+.-.|=++-.|++.|.+.+-... -..-..+||+|||..-..-..+|.+.++.+.. ..|..|+|-||+--
T Consensus 81 ~~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~~~--~gi~i~~igvG~~~~~~~~~ 158 (198)
T 1n3y_A 81 QLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADA--AGIIRYAIGVGLAFQNRNSW 158 (198)
T ss_dssp CCCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHHHHHH--TTCEEEEEEESGGGGSSTTH
T ss_pred CCCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHH--CCCEEEEEEccccccccccH
Confidence 33345667889999987763210 02235799999998766556778888887754 68999999999854
Q ss_pred HHHHHHHhhCCCCce-EEecCCCchHHHHHHHHHh
Q psy11447 323 DQAKRLTQELPAGRG-FVCMDLTEIPQILQQIFSA 356 (360)
Q Consensus 323 dqA~~l~~~Lp~Gr~-fv~~dt~~lP~il~qIf~s 356 (360)
++-..|... |.|+. |...|..+|+.++++|...
T Consensus 159 ~~L~~iA~~-~~g~~~~~~~~~~~l~~~~~~i~~~ 192 (198)
T 1n3y_A 159 KELNDIASK-PSQEHIFKVEDFDALKDIQNQLKEK 192 (198)
T ss_dssp HHHHHHSCS-SSGGGEEEESSGGGGGGGHHHHHHH
T ss_pred HHHHHHHcC-CCcccEEEeCCHHHHHHHHHHHHhh
Confidence 344455544 66765 8899999999999988654
No 15
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=95.96 E-value=0.038 Score=56.32 Aligned_cols=151 Identities=13% Similarity=0.198 Sum_probs=92.7
Q ss_pred HHHHhhccccceeEeeeeccCCCCccccccCCCCCCCchHHHHHHHHHHHhhcc----ccCCcchHHHHHHHHHHHHhhc
Q psy11447 199 SLEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQF----CASGDYTLESIRASIQDLTTEC 274 (360)
Q Consensus 199 vMEaf~g~e~k~~ydivGHSGd~~~i~lV~~~~~Pk~~keRl~vl~~M~aH~Qf----c~sGD~Tlea~~~ai~~~a~~~ 274 (360)
+++.|.....+.++-||-=|++...+ +..... +.+++-.+++.+ ..-+| .-.|=+|-+|++.|.+.+....
T Consensus 271 ~i~~l~~~~~~~rv~lv~f~~~~~~~--~~l~~~--~~~~~~~~~~~i-~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~ 345 (741)
T 3hrz_D 271 LIEKVASYGVKPRYGLVTYATYPKIW--VKVSEA--DSSNADWVTKQL-NEINYEDHKLKSGTNTKKALQAVYSMMSWPD 345 (741)
T ss_dssp HHHHHHHTTCCCEEEEEEESSSEEEE--ECTTSG--GGGCHHHHHHHH-TTCCGGGGSSSCCCCHHHHHHHHHHHHCCC-
T ss_pred HHHhhhccCCCceEEEEEeccCCcee--Eeeccc--CCcCHHHHHHHH-HhcccccccCCCChHHHHHHHHHHHHHhhhh
Confidence 66677666666777777776654321 111111 112333333333 33444 5567778999999999982100
Q ss_pred ------ccCCCeEEEEEecCCccccCCChhHHHHHHhc-----------CcccccEEEEEecCc--hHHHHHHHhhCCCC
Q psy11447 275 ------AQHDDSILIVLSDANLDRYGIAPREMGEALNA-----------EAASVRAYAIFIGSL--GDQAKRLTQELPAG 335 (360)
Q Consensus 275 ------~daDe~fVivlSDANL~RYgI~p~~l~~~l~~-----------~~p~V~a~~IfIgsl--gdqA~~l~~~Lp~G 335 (360)
...-..+||+|||-.-. .|-.|...++.+.. ....|..|+|-||+- .++-+.|+. .+.|
T Consensus 346 ~~~~~~~~~~~~~iillTDG~~n-~g~~p~~~~~~i~~~~~~~~~a~~~~~~gi~i~~igvG~~~~~~~L~~ia~-~~~g 423 (741)
T 3hrz_D 346 DVPPEGWNRTRHVIILMTDGLHN-MGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS-KKDN 423 (741)
T ss_dssp -CCCTTGGGEEEEEEEEECSCCC-SSSCTHHHHHHHHHHTTCSSCTTCCCGGGEEEEEEECSSSCCHHHHHHHSC-CCTT
T ss_pred hccccchhccCeEEEEECCCccc-cCCCchHHHHHHHHHhhcccccccccccCeeEEEEeCCCcCCHHHHHHHhc-CCCC
Confidence 01123689999998432 33477776664432 226788899999962 334445544 4556
Q ss_pred --ceEEecCCCchHHHHHHHHHh
Q psy11447 336 --RGFVCMDLTEIPQILQQIFSA 356 (360)
Q Consensus 336 --r~fv~~dt~~lP~il~qIf~s 356 (360)
+.|..-|.++|..++++|...
T Consensus 424 ~~~~~~~~~~~~L~~~~~~l~~~ 446 (741)
T 3hrz_D 424 EQHVFKVKDMENLEDVFYQMIDE 446 (741)
T ss_dssp CCCEECBSSHHHHHHHHHHHHHH
T ss_pred cceEEEeCCHHHHHHHHHHhhcc
Confidence 699999999999999998754
No 16
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=95.87 E-value=0.064 Score=46.17 Aligned_cols=139 Identities=9% Similarity=0.121 Sum_probs=82.6
Q ss_pred HHHHhhccccceeEeeeeccCCCCccccccCCCCCCCchHHHHHHHHHHHhhccccC-CcchHHHHHHHHHHHHhhccc-
Q psy11447 199 SLEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQFCAS-GDYTLESIRASIQDLTTECAQ- 276 (360)
Q Consensus 199 vMEaf~g~e~k~~ydivGHSGd~~~i~lV~~~~~Pk~~keRl~vl~~M~aH~Qfc~s-GD~Tlea~~~ai~~~a~~~~d- 276 (360)
+++.|.-.....+.-||.-|++... .+.... .. +++ ++++.+-. -+|--. |=+|-+|++.|.+.+-.....
T Consensus 49 ~~~~l~~~~~~~rv~vv~fs~~~~~--~~~l~~-~~-~~~--~~~~~i~~-l~~~gg~~T~~~~aL~~a~~~l~~~~~g~ 121 (199)
T 3zqk_A 49 VIQRMDVGQDSIHVTVLQYSYMVTV--EYPFSE-AQ-SKG--DILQRLRE-IRYQGGNRTNTGLALRYLSDHSFLVSQGD 121 (199)
T ss_dssp HHHHSCBSTTSBEEEEEEESSSEEE--EECTTS-CC-CHH--HHHHHHHH-CCCCCCSCCCHHHHHHHCCCCCTCGGGTC
T ss_pred HHHhcCCCCCceEEEEEEECCcccE--EEecCC-cC-CHH--HHHHHHHh-CcCCCCCcChHHHHHHHHHHHhhCcccCC
Confidence 5666653456677778877765432 112221 12 232 33333322 233222 357889999888865321001
Q ss_pred --CCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCc--hHHHHHHHhhCCCCceEEecCCCchHHHHHH
Q psy11447 277 --HDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSL--GDQAKRLTQELPAGRGFVCMDLTEIPQILQQ 352 (360)
Q Consensus 277 --aDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgsl--gdqA~~l~~~Lp~Gr~fv~~dt~~lP~il~q 352 (360)
.-..+||+|||-.-.. .+. ... ..|..|+|=||+- -++-+.|+. | |+.|..-|.++|+.++++
T Consensus 122 r~~~~~~iillTDG~~~d-~v~--------~~~-~~v~v~~iGiG~~~~~~~L~~iA~--~-~~~~~~~~~~~L~~~~~~ 188 (199)
T 3zqk_A 122 REQAPNLVYMVTGNPASD-EIK--------RLP-GDIQVVPIGVGPNANVQELERIGW--P-NAPILIQDFETLPREAPD 188 (199)
T ss_dssp CTTSCEEEEEEECSCCSS-CCC--------CCC-TTEEEEEEEESTTCCHHHHHHHHT--T-SCCEEESCTTTHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCch-HHH--------HHh-CCCEEEEEEcCCCCCHHHHHHHhC--C-CceEEeCCHHHHHHHHHH
Confidence 1136999999975221 111 112 6789999999853 345566665 5 778999999999999999
Q ss_pred HHHhc
Q psy11447 353 IFSAS 357 (360)
Q Consensus 353 If~s~ 357 (360)
|+...
T Consensus 189 l~~~~ 193 (199)
T 3zqk_A 189 LVLQR 193 (199)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88653
No 17
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=95.70 E-value=0.075 Score=48.22 Aligned_cols=148 Identities=11% Similarity=0.111 Sum_probs=86.5
Q ss_pred HHHHhhccccceeEeeeeccCCCCccccccCCCCCCCch--HHHHHHHHHHHhh--ccccCCcchHHHHHHHHHHHHhh-
Q psy11447 199 SLEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNK--QRLEVIKIMHAHA--QFCASGDYTLESIRASIQDLTTE- 273 (360)
Q Consensus 199 vMEaf~g~e~k~~ydivGHSGd~~~i~lV~~~~~Pk~~k--eRl~vl~~M~aH~--Qfc~sGD~Tlea~~~ai~~~a~~- 273 (360)
+++.|.--......-||.-|++... .+. +.+.. ++-.++..+..-. .+.--|=+|-+|++.|.+.+...
T Consensus 47 lv~~l~~~~~~~rvglv~Fs~~~~~--~~~----l~~~~~~~~~~~~~~i~~l~~~~~~~G~T~~~~AL~~a~~~l~~~~ 120 (266)
T 4hqo_A 47 LINSLSLSRDTINLYMNLFGSYTTE--LIR----LGSGQSIDKRQALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDRV 120 (266)
T ss_dssp HHHTCCBCTTSEEEEEEEESSSEEE--EEC----TTSHHHHCHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcccCCCCcEEEEEEecCCcce--EEe----cCCCCccCHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHhhcc
Confidence 4555542235566677777776322 111 22221 2333333333221 13444567788999997666431
Q ss_pred cccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCchHHH--HHHHhhCCC---CceEEecCCCchHH
Q psy11447 274 CAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQA--KRLTQELPA---GRGFVCMDLTEIPQ 348 (360)
Q Consensus 274 ~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgdqA--~~l~~~Lp~---Gr~fv~~dt~~lP~ 348 (360)
.-..-..+||+|||..-.. +-.+...++.+.. ..|..|+|-||.--++. ..|+..-|. ++.|...|.++|+.
T Consensus 121 ~r~~~~~~iIllTDG~~~d-~~~~~~~a~~l~~--~gi~i~~iGiG~~~~~~~L~~iA~~~~~~g~~~~~~~~d~~~L~~ 197 (266)
T 4hqo_A 121 NREKAIQLVILMTDGVPNS-KYRALEVANKLKQ--RNVRLAVIGIGQGINHQFNRLIAGCRPREPNCKFYSYADWNEAVA 197 (266)
T ss_dssp SCTTSEEEEEEEECSCCSC-HHHHHHHHHHHHH--TTCEEEEEECSSSCCHHHHHHHHTCCTTCSSCTTEECSCHHHHHH
T ss_pred ccCCCCeEEEEEccCCCCC-chHHHHHHHHHHH--CCCEEEEEecCcccCHHHHHHhhCCCCCCCCCCeEEecCHHHHHH
Confidence 0012347999999987651 1123344444543 67999999999844433 455544322 48999999999999
Q ss_pred HHHHHHH
Q psy11447 349 ILQQIFS 355 (360)
Q Consensus 349 il~qIf~ 355 (360)
++++|..
T Consensus 198 i~~~l~~ 204 (266)
T 4hqo_A 198 LIKPFIA 204 (266)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9998864
No 18
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=95.57 E-value=0.016 Score=49.11 Aligned_cols=137 Identities=13% Similarity=0.149 Sum_probs=79.5
Q ss_pred HHHHhhccccceeEeeeeccCCCCc-cccccCCCCCCCchHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhc-c-
Q psy11447 199 SLEAFQDFDQRISLDIIGHSGETHS-IPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTEC-A- 275 (360)
Q Consensus 199 vMEaf~g~e~k~~ydivGHSGd~~~-i~lV~~~~~Pk~~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~-~- 275 (360)
+++.|. ....+.-+|.-|++... +||-... +..+..+.+ ..-++.-.|=+|-.|++.|.+++-... +
T Consensus 30 ~~~~l~--~~~~rv~vv~fs~~~~~~~~l~~~~----~~~~~~~~~----~~i~~~~g~T~~~~aL~~a~~~~~~~~~g~ 99 (179)
T 1mjn_A 30 VMKKCS--NTSYQFAAVQFSTSYKTEFDFSDYV----KRKDPDALL----KHVKHMLLLTNTFGAINYVATEVFREELGA 99 (179)
T ss_dssp HHHHTT--TSSEEEEEEEESSSEEEEECHHHHH----HHCCHHHHH----TTCCCCCBCCCHHHHHHHHHHHTSSGGGTC
T ss_pred HHHHhC--CCCeEEEEEEECCceeEEEcCcccC----CHHHHHHHH----HhcccCCCCChHHHHHHHHHHHhcccccCC
Confidence 556652 56677888888776432 2222110 001122222 233343346677889999887763210 0
Q ss_pred -cCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCchHH--H-HHHHh--hCCCC-ceEEecCCCchHH
Q psy11447 276 -QHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQ--A-KRLTQ--ELPAG-RGFVCMDLTEIPQ 348 (360)
Q Consensus 276 -daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgdq--A-~~l~~--~Lp~G-r~fv~~dt~~lP~ 348 (360)
+.-..++|+|||-.-. .+.++. +. ..|..|+|=||+-.+. . +.|.. .-|.| +.|...|..+||.
T Consensus 100 r~~~~~~iillTDG~~~-~~~~~~-------~~-~~i~i~~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~L~~ 170 (179)
T 1mjn_A 100 RPDATKVLIIITDGEAT-DSGNID-------AA-KDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKD 170 (179)
T ss_dssp CTTSEEEEEEEESSCCS-SCSCCG-------GG-TTSEEEEEEESGGGCSHHHHHTTGGGSCSCHHHHEEEESSGGGSCC
T ss_pred CCCCCeEEEEEcCCCCC-CCcchH-------HH-CCCEEEEEEccccccccccHHHHHHHhCCccHhcEEEeCCHHHHHH
Confidence 1124699999997633 344321 33 7899999999985431 1 12221 23544 5789999999999
Q ss_pred HHHHHH
Q psy11447 349 ILQQIF 354 (360)
Q Consensus 349 il~qIf 354 (360)
++++|-
T Consensus 171 i~~~i~ 176 (179)
T 1mjn_A 171 LCTELQ 176 (179)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999884
No 19
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=95.51 E-value=0.21 Score=42.09 Aligned_cols=138 Identities=14% Similarity=0.122 Sum_probs=83.2
Q ss_pred HHHHhhccccceeEeeeeccCCCCc-cccccCCCCCCCchHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhc---
Q psy11447 199 SLEAFQDFDQRISLDIIGHSGETHS-IPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTEC--- 274 (360)
Q Consensus 199 vMEaf~g~e~k~~ydivGHSGd~~~-i~lV~~~~~Pk~~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~--- 274 (360)
+++.|.--.++.+.-+|.-|++... +|| + +..+++.+ +.....-+|.-.|=+|-.|++.|.+.+....
T Consensus 33 ~~~~l~~~~~~~rv~lv~f~~~~~~~~~l---~--~~~~~~~~---~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~g~ 104 (189)
T 1atz_A 33 FISKANIGPRLTQVSVLQYGSITTIDVPW---N--VVPEKAHL---LSLVDVMQREGGPSQIGDALGFAVRYLTSEMHGA 104 (189)
T ss_dssp HHHHSCBSTTSEEEEEEEESSSEEEEECT---T--CCCCHHHH---HHHHHTCCCCCCCCCHHHHHHHHHHHHHSCCTTC
T ss_pred HHHhcCcCCCCeEEEEEEECCcceEEEec---C--CCCCHHHH---HHHHHhCcCCCCcchHHHHHHHHHHHHhccccCC
Confidence 5556543245677788888765432 222 1 12333322 2223334453345677899999999886420
Q ss_pred ccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCchH--HHHHHHhhCCCC-ceEEecCCCchHHHH
Q psy11447 275 AQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGD--QAKRLTQELPAG-RGFVCMDLTEIPQIL 350 (360)
Q Consensus 275 ~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgd--qA~~l~~~Lp~G-r~fv~~dt~~lP~il 350 (360)
.+.-...||||||..=. =.|...++.+.. ..|..|+|-||+--+ +-+.|+.. |.| +.|...+.+++|.+.
T Consensus 105 r~~~~~~vivltdg~~~---~~~~~~~~~~~~--~gi~v~~igvG~~~~~~~L~~iA~~-~~~~~~~~~~~~~~~~~l~ 177 (189)
T 1atz_A 105 RPGASKAVVILVTDVSV---DSVDAAADAARS--NRVTVFPIGIGDRYDAAQLRILAGP-AGDSNVVKLQRIEDLPTMV 177 (189)
T ss_dssp CTTSEEEEEEEECSCCS---SCCHHHHHHHHH--TTEEEEEEEESSSSCHHHHHHHTGG-GGGGGCEEESSTTHHHHHH
T ss_pred CCCCCcEEEEEeCCCCC---chHHHHHHHHHH--CCCEEEEEEcCCcCCHHHHHHHHCC-CcccCEEEecChhhHHHHH
Confidence 01123667888876432 246777777765 689999999998433 34455544 433 678888889999885
No 20
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=94.82 E-value=0.2 Score=44.14 Aligned_cols=131 Identities=11% Similarity=0.155 Sum_probs=70.5
Q ss_pred eEeeeeccCCCCccccccCCCCCCCchHHHHHHHHHHHhhccccCCcch--HHHHHHHHHHHHhhc-ccCCCeEEEEEec
Q psy11447 211 SLDIIGHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYT--LESIRASIQDLTTEC-AQHDDSILIVLSD 287 (360)
Q Consensus 211 ~ydivGHSGd~~~i~lV~~~~~Pk~~keRl~vl~~M~aH~Qfc~sGD~T--lea~~~ai~~~a~~~-~daDe~fVivlSD 287 (360)
+.-+|.=+|+++.+- -||+++.+ .++..++. ...|..| -.|+..|.+.+.... ...-+++||+++|
T Consensus 47 ~vGLV~fa~~~a~~~-----~plT~d~~--~i~~~L~~----l~~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~ 115 (192)
T 2x5n_A 47 MCGLMTIGDNSPQVL-----STLTRDYG--KFLSAMHD----LPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGS 115 (192)
T ss_dssp EEEEEECCTTSCCEE-----EEEESCHH--HHHHHHTT----CCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECS
T ss_pred eEEEEEEcCCCcEEe-----cCCCCCHH--HHHHHHHc----CCCCCCchHHHHHHHHHHHHHhccccCCCceEEEEEEC
Confidence 445566566533211 26666643 34444443 3334444 788999998886531 0134567777766
Q ss_pred CCccccCCChhHHHHHHhcCcccccEEEEEecCchHH--HHHHHhhCC-CCc-eEEecCCCchHHHHHHHHHhc
Q psy11447 288 ANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQ--AKRLTQELP-AGR-GFVCMDLTEIPQILQQIFSAS 357 (360)
Q Consensus 288 ANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgdq--A~~l~~~Lp-~Gr-~fv~~dt~~lP~il~qIf~s~ 357 (360)
.. .--.-.+.++++.+.. .+|+-++|-+|+-... -+.|.+..- .|. .|+..-.. |..|+..+.||
T Consensus 116 ~~-~~~~~~~~~~a~~lk~--~gi~v~~Ig~G~~~~~~~l~~la~~~n~~~~s~~~~~~~~--~~~l~d~~~~s 184 (192)
T 2x5n_A 116 PI-VEDEKNLIRLAKRMKK--NNVAIDIIHIGELQNESALQHFIDAANSSDSCHLVSIPPS--PQLLSDLVNQS 184 (192)
T ss_dssp CC-SSCHHHHHHHHHHHHH--TTEEEEEEEESCC---CHHHHHHHHHCSTTCCEEEEECCC--SSCHHHHHHTS
T ss_pred CC-CCCchhHHHHHHHHHH--CCCEEEEEEeCCCCccHHHHHHHHhccCCCceEEEEecCc--chhHHHHHhcC
Confidence 54 1111223445555655 6899999999985422 445555543 133 44433222 56677777666
No 21
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=93.88 E-value=0.25 Score=41.54 Aligned_cols=115 Identities=14% Similarity=0.117 Sum_probs=66.7
Q ss_pred HHHHhhccccceeEeeeeccCCCCc-cccccCCCCCCCchH-HHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhc--
Q psy11447 199 SLEAFQDFDQRISLDIIGHSGETHS-IPFVTSNNLPRDNKQ-RLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTEC-- 274 (360)
Q Consensus 199 vMEaf~g~e~k~~ydivGHSGd~~~-i~lV~~~~~Pk~~ke-Rl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~-- 274 (360)
+++.|.--.+..++-||.-|++... +||- .....+++ -.+.+..+ +|.-.|=+|-.|++.|.+.+....
T Consensus 45 ~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~---~~~~~~~~~~~~~i~~l----~~~~g~T~~~~aL~~a~~~l~~~~~g 117 (178)
T 2xgg_A 45 FLMVLPIGPEEVNNAVVTYSTDVHLQWDLQ---SPNAVDKQLAAHAVLDM----PYKKGSTNTSDGLKACKQILFTGSRP 117 (178)
T ss_dssp HHHHSCBSTTSEEEEEEEESSSEEEEECTT---SGGGSCHHHHHHHHHHC----CCCCCCCCHHHHHHHHHHHHHHCCCT
T ss_pred HHHhcCCCCCCeEEEEEEeCCceEEEEeCC---CCCccCHHHHHHHHHhC----CCCCCCccHHHHHHHHHHHhcCcccC
Confidence 5556543345677888887776432 2222 11111222 22233333 454456788999999999874210
Q ss_pred -ccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCchH
Q psy11447 275 -AQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGD 323 (360)
Q Consensus 275 -~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgd 323 (360)
.+.-..+||+|||.+-. .+..+.+.++.+.. ..|..|+|-||+--|
T Consensus 118 ~r~~~~~~iillTDG~~~-~~~~~~~~~~~l~~--~gi~v~~igvG~~~~ 164 (178)
T 2xgg_A 118 GREHVPKLVIGMTDGESD-SDFRTVRAAKEIRE--LGGIVTVLAVGHYVA 164 (178)
T ss_dssp TCTTSCEEEEEEESSCCC-HHHHHSHHHHHHHH--TTCEEEEEECC----
T ss_pred CCCCCCEEEEEEcCCCCC-CCccHHHHHHHHHH--CCCEEEEEEcCCcCC
Confidence 02345899999997643 23346777777765 588999998887433
No 22
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.12 E-value=0.37 Score=45.49 Aligned_cols=174 Identities=10% Similarity=0.123 Sum_probs=97.9
Q ss_pred hHHHhhhhhccccCCchhhHHHHHHHHHHHHHhhhhhccceeeeeccCCCCccccccccccCCChhhHHHHHHHhhcccc
Q psy11447 109 GVLGQHENTRKFNGYDGRLDRELEAVIMVLEAFQDFDQRIRLDIIGHSGETHSIPFVTSIKNLPRDNKQRLEVIKVHHNN 188 (360)
Q Consensus 109 ~v~dv~~nv~rFd~yD~rl~R~lE~v~~Vme~~~~~e~kl~~di~~HSG~~~siP~v~kvk~~are~k~RL~ei~m~~~~ 188 (360)
+|.|+|+||..=|-.-.|++...+++..
T Consensus 8 iviD~S~SM~~~D~~PsRl~a~k~Av~~---------------------------------------------------- 35 (268)
T 4b4t_W 8 LVIDNSEYSRNGDFPRTRFEAQIDSVEF---------------------------------------------------- 35 (268)
T ss_dssp EEECCSSTTSSTTSSSCHHHHHHHHHHH----------------------------------------------------
T ss_pred EEEECCHHHhCCCCCCcHHHHHHHHHHH----------------------------------------------------
Confidence 4679999998877444587777777766
Q ss_pred ccccCCchhhHHHHhhccccceeEeeeeccCCCCccccccCCCCCCCchHHHHHHHHHHHhhccccCCcchHHHHHHHHH
Q psy11447 189 LRNTGSDLGTSLEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYTLESIRASIQ 268 (360)
Q Consensus 189 lrfn~~DL~rvMEaf~g~e~k~~ydivGHSGd~~~i~lV~~~~~Pk~~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~ 268 (360)
+.+++......-..-||.-+|+.+.+. .||++++. +++..++.- .|--|=+--.|++.|+.
T Consensus 36 ----------li~~~~~~nPed~VGLVtfag~~~~vl-----~plT~D~~--~il~aL~~l--~~~G~T~l~~gL~~A~~ 96 (268)
T 4b4t_W 36 ----------IFQAKRNSNPENTVGLISGAGANPRVL-----STFTAEFG--KILAGLHDT--QIEGKLHMATALQIAQL 96 (268)
T ss_dssp ----------HHHHHHHHCTTCEEEEEECCTTSCEEE-----EEEESCHH--HHHHHHTTC--CCCSCCCHHHHHHHHHH
T ss_pred ----------HHHHHhhCCCcceEEEEEecCCcceec-----cCCcchHH--HHHHHhhhc--CcCCCCChHHHHHHHHH
Confidence 445443322223556777777765432 24566654 466666532 24333344789999999
Q ss_pred HHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCchH---HHHHHHhhCC----CCceEEec
Q psy11447 269 DLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGD---QAKRLTQELP----AGRGFVCM 341 (360)
Q Consensus 269 ~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgd---qA~~l~~~Lp----~Gr~fv~~ 341 (360)
.+.......-..-+|+++|-...-=.-.+..+++.+++ .+|.-++|-+|+-.. .-+.+.+..- .+--||..
T Consensus 97 aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk--~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~v~v 174 (268)
T 4b4t_W 97 TLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKK--NNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTV 174 (268)
T ss_dssp HHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHH--HTEEEEEEEESSCCSSCCHHHHHHHHHCSSTTTSCEEEEE
T ss_pred HHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHH--cCCEEEEEEeCCCccchHHHHHHHHHhcCCCCCceeEEEe
Confidence 88642112333456667666555322223445555655 689999999997222 2344444442 12234544
Q ss_pred CCCchHHHHHHHHHhc
Q psy11447 342 DLTEIPQILQQIFSAS 357 (360)
Q Consensus 342 dt~~lP~il~qIf~s~ 357 (360)
-.. |.+|...+.||
T Consensus 175 ~~g--~~~lsd~l~~s 188 (268)
T 4b4t_W 175 TPG--PRLLYENIASS 188 (268)
T ss_dssp CCC--SSCHHHHHHTS
T ss_pred CCC--CccHHHHHhcC
Confidence 333 55564444443
No 23
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=87.02 E-value=2.6 Score=39.51 Aligned_cols=73 Identities=16% Similarity=0.188 Sum_probs=55.2
Q ss_pred CCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCch-------HHHHHHHhhCCCCceEEecCCCchHHH
Q psy11447 277 HDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLG-------DQAKRLTQELPAGRGFVCMDLTEIPQI 349 (360)
Q Consensus 277 aDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslg-------dqA~~l~~~Lp~Gr~fv~~dt~~lP~i 349 (360)
+--+.+|+|||-+ +-.|-.|.+.++.+.. ..|+-|+|=||.-+ ++-+.|++.= .|+.|.+ ++.+|.+.
T Consensus 8 ~~~k~iillTDG~-~~~g~~p~~aa~~a~~--~gi~v~tIGig~~~~~~~~~~~~L~~IA~~t-GG~yf~a-~~~~l~~~ 82 (242)
T 3rag_A 8 ATIRQILVITDGC-SNIGPDPVEAARRAHR--HGIVVNVIGIVGRGDAGEQGYQEAHSIADAG-GGMCRIV-QPADISAT 82 (242)
T ss_dssp CCEEEEEEEESSC-CCSSSCHHHHHHHHHH--TTCEEEEEEECCSSSCTTCCCHHHHHHHHHT-TSCEEEE-CGGGHHHH
T ss_pred CCccEEEEEccCC-CCCCCCHHHHHHHHHH--CCCEEEEEEecCCccccchhHHHHHHHHHhc-CCeEEEe-eHHHHHHH
Confidence 3458999999985 2344589999997765 68999999997533 5666777665 4999997 88999987
Q ss_pred HHHHH
Q psy11447 350 LQQIF 354 (360)
Q Consensus 350 l~qIf 354 (360)
+|.+-
T Consensus 83 ~~~~t 87 (242)
T 3rag_A 83 AQMMT 87 (242)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 24
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=81.66 E-value=0.94 Score=49.97 Aligned_cols=144 Identities=17% Similarity=0.250 Sum_probs=85.6
Q ss_pred HHHHhhccccceeEeeeeccCCCCcc-ccccCCCCCCCchHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcc--
Q psy11447 199 SLEAFQDFDQRISLDIIGHSGETHSI-PFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECA-- 275 (360)
Q Consensus 199 vMEaf~g~e~k~~ydivGHSGd~~~i-~lV~~~~~Pk~~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~-- 275 (360)
+++.|. ..+.+.-||.-|++...+ ||-... +..+..+.++.| ++---|=+|-.|++.|.+++-....
T Consensus 158 lv~~~~--~~~~rVglV~Fs~~~~~~~~lt~~~----~~~~l~~ai~~i----~~~gG~T~~g~AL~~a~~~lf~~~~g~ 227 (1095)
T 3k6s_A 158 VISQFQ--RPSTQFSLMQFSNKFQTHFTFEEFR----RSSNPLSLLASV----HQLQGFTYTATAIQNVVHRLFHASYGA 227 (1095)
T ss_dssp HHHSSC--SSSEEEEEEEESSSEEEEECSHHHH----SCSCGGGGTTTC----CCCCSCBCHHHHHHHHHTTTTSTTTTC
T ss_pred HHHhcc--ccccEEEEEEECCeEEEEecCcccC----CHHHHHHHHhhh----hcccCCChHHHHHHHHHHhhccccccC
Confidence 555555 344666777766653321 222111 111222223222 2223466788999999887742200
Q ss_pred -cCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCch------HHHHHHHhhCCCC-ceEEecCCCchH
Q psy11447 276 -QHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLG------DQAKRLTQELPAG-RGFVCMDLTEIP 347 (360)
Q Consensus 276 -daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslg------dqA~~l~~~Lp~G-r~fv~~dt~~lP 347 (360)
+.-..++|||||-.-..-...+...++.+.+ ..|..|+|=||+-. ++-..|+. -|.| +.|...|..+|+
T Consensus 228 R~~~~kviIllTDG~~~~d~~~~~~~a~~~r~--~GI~i~aIGVG~~~~~~~d~~eL~~IAs-~p~g~~vf~v~d~~~L~ 304 (1095)
T 3k6s_A 228 RRDAAKILIVITDGKKEGDSLDYKDVIPMADA--AGIIRYAIGVGLAFQNRNSWKELNDIAS-KPSQEHIFKVEDFDALK 304 (1095)
T ss_dssp CSSSEEEEEEEESSCCBSCSSCHHHHHHHHHH--HCEEECCEEBSSGGGSTTSSHHHHTTSC-SSTTTSCCCBSCSGGGG
T ss_pred CCCCCeEEEEEeCCCcCCCchhHHHHHHHHHH--CCCEEEEEecccccccccCHHHHHHHHc-CCCCceEEEcCCHHHHH
Confidence 1123699999998775444567777777765 68999999999841 33333433 3444 899999999998
Q ss_pred HHHHHHHH
Q psy11447 348 QILQQIFS 355 (360)
Q Consensus 348 ~il~qIf~ 355 (360)
.|+++|..
T Consensus 305 ~i~~~L~~ 312 (1095)
T 3k6s_A 305 DIQNQLKE 312 (1095)
T ss_dssp SSTTTHHH
T ss_pred HHHHHhhh
Confidence 87766543
No 25
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=77.99 E-value=7.4 Score=32.32 Aligned_cols=64 Identities=11% Similarity=0.142 Sum_probs=37.9
Q ss_pred cCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCCh-----------hHHHHHHhcCcccccEEEEEecC
Q psy11447 254 ASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAP-----------REMGEALNAEAASVRAYAIFIGS 320 (360)
Q Consensus 254 ~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p-----------~~l~~~l~~~~p~V~a~~IfIgs 320 (360)
.-|=++-+|++.|.+.+.+.....-...||+|||..-. .|..+ .++++.+.. ..|+.|+|-||.
T Consensus 77 ~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~gi~v~~ig~g~ 151 (189)
T 2x31_A 77 GGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGN-IALDGTANRELAGEQATKVARAIRA--SGMPAVIIDTAM 151 (189)
T ss_dssp CBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCS-SCCTHHHHHGGGTCCCEEEEECTGG--GGSCCTHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCC-CCCCccccccchhHHHHHHHHHHHH--cCCeEEEEecCC
Confidence 34556689999999988753111236799999998543 23322 223333333 447766666654
No 26
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=76.77 E-value=23 Score=27.02 Aligned_cols=108 Identities=10% Similarity=0.115 Sum_probs=65.7
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|.. .+......|++.+.+. . +=+||.|.++. +.+.-++.+.|......-+.-+
T Consensus 15 ~~~~~~~l~~~l~~~g~~v---~~~~~~~~a~~~l~~~--~----~dlvi~d~~l~--~~~g~~~~~~l~~~~~~~~~~i 83 (140)
T 3grc_A 15 DPDIARLLNLMLEKGGFDS---DMVHSAAQALEQVARR--P----YAAMTVDLNLP--DQDGVSLIRALRRDSRTRDLAI 83 (140)
T ss_dssp CHHHHHHHHHHHHHTTCEE---EEECSHHHHHHHHHHS--C----CSEEEECSCCS--SSCHHHHHHHHHTSGGGTTCEE
T ss_pred CHHHHHHHHHHHHHCCCeE---EEECCHHHHHHHHHhC--C----CCEEEEeCCCC--CCCHHHHHHHHHhCcccCCCCE
Confidence 5566677777766544432 1223344566666544 3 33777898886 5777788888887423446678
Q ss_pred EEecCchHHHHHHHhhCCCCc-eEEec--CCCchHHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAGR-GFVCM--DLTEIPQILQQIF 354 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~Gr-~fv~~--dt~~lP~il~qIf 354 (360)
|++.+-.+......+.+.+|- .|+.. +..+|-..++.++
T Consensus 84 i~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l 125 (140)
T 3grc_A 84 VVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAI 125 (140)
T ss_dssp EEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHH
T ss_pred EEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 888887776665547777774 46655 3344444555444
No 27
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=64.51 E-value=69 Score=32.38 Aligned_cols=77 Identities=6% Similarity=0.082 Sum_probs=50.6
Q ss_pred HHHHHHHHhhccccCCcch--HHHHHHHHHHHHhhcc--cCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEE-E
Q psy11447 241 EVIKIMHAHAQFCASGDYT--LESIRASIQDLTTECA--QHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAY-A 315 (360)
Q Consensus 241 ~vl~~M~aH~Qfc~sGD~T--lea~~~ai~~~a~~~~--daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~-~ 315 (360)
++++.++.. ..-+++.| .+|+..|++.+.+.+. .+...-+|++||.+---=...+..+++.|.. -+|+-+ +
T Consensus 89 ~~l~~l~~~--l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~~~~~~~a~~l~~--~gI~i~~v 164 (565)
T 1jey_B 89 DLLEDIESK--IQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKK--CDISLQFF 164 (565)
T ss_dssp HHHHHHHTT--CCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCTTHHHHHHHHHH--TTEEEEEE
T ss_pred HHHHHHHhh--ccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEE
Confidence 445555442 21222677 8999999998865321 1245899999987544225678888888886 578877 6
Q ss_pred EEecCc
Q psy11447 316 IFIGSL 321 (360)
Q Consensus 316 IfIgsl 321 (360)
|-+|.-
T Consensus 165 ig~g~~ 170 (565)
T 1jey_B 165 LPFSLG 170 (565)
T ss_dssp ESSCCC
T ss_pred eccCCC
Confidence 656663
No 28
>1ugj_A Riken cDNA 2310057J16 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.41.1.3
Probab=64.21 E-value=12 Score=32.50 Aligned_cols=45 Identities=16% Similarity=0.342 Sum_probs=37.6
Q ss_pred HHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCc
Q psy11447 241 EVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANL 290 (360)
Q Consensus 241 ~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL 290 (360)
.||+.-..| -|.+|-.--++=..+++++.+. ++ ++|||++-|++.
T Consensus 21 ~iI~NAL~~--~~LaG~vN~~~r~~~le~i~~s--~~-~hFlILfrd~~~ 65 (141)
T 1ugj_A 21 FIIHNALSH--CCLAGKVNEPQKNRILEEIEKS--KA-NHFLILFRDSSC 65 (141)
T ss_dssp HHHHHHHHH--TTTCSSTTHHHHHHHHHHHHHS--CC-SCEEEEESSSSC
T ss_pred HHHHHHHHH--hcCCCccCHHHHHHHHHHHhcc--cC-CeEEEEEecCCC
Confidence 355555555 7999999999999999999986 77 699999999984
No 29
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=63.92 E-value=27 Score=26.88 Aligned_cols=107 Identities=14% Similarity=0.256 Sum_probs=60.7
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+..-.+.++.+.....|-.. +....+.|++.+.+. ..| +||.|-++. |.+--++.+.|....+.-+.-+
T Consensus 13 ~~~~~~~l~~~L~~~g~~v~---~~~~~~~al~~~~~~--~~d----lvl~D~~lp--~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 13 DDTVAEMLELVLRGAGYEVR---RAASGEEALQQIYKN--LPD----ALICDVLLP--GIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CHHHHHHHHHHHHHTTCEEE---EESSHHHHHHHHHHS--CCS----EEEEESCCS--SSCHHHHHHHHHHSGGGTTCCE
T ss_pred CHHHHHHHHHHHHHCCCEEE---EeCCHHHHHHHHHhC--CCC----EEEEeCCCC--CCCHHHHHHHHHcCCCcCCccE
Confidence 45566677776654443221 222334555555544 333 788899986 5677788888877522345567
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEec--CCCchHHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCM--DLTEIPQILQQIF 354 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~--dt~~lP~il~qIf 354 (360)
|++.+-++..... +.+-+| ..|+.. +..+|-..++.++
T Consensus 82 i~~t~~~~~~~~~-~~~~~ga~~~l~KP~~~~~L~~~i~~~l 122 (136)
T 3t6k_A 82 LMLTAQGDISAKI-AGFEAGANDYLAKPFEPQELVYRVKNIL 122 (136)
T ss_dssp EEEECTTCHHHHH-HHHHHTCSEEEETTCCHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHH-HHHhcCcceEEeCCCCHHHHHHHHHHHH
Confidence 8888766654432 233333 457766 3345555555554
No 30
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=62.97 E-value=29 Score=26.03 Aligned_cols=110 Identities=7% Similarity=0.048 Sum_probs=55.4
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|-.. +......|++.+.+. .. =+|+.|.++. +.+.-++.+.+.+..|. .-+
T Consensus 16 ~~~~~~~l~~~L~~~g~~v~---~~~~~~~a~~~l~~~--~~----dlvi~d~~l~--~~~g~~~~~~l~~~~~~--~~i 82 (130)
T 3eod_A 16 EQVFRSLLDSWFSSLGATTV---LAADGVDALELLGGF--TP----DLMICDIAMP--RMNGLKLLEHIRNRGDQ--TPV 82 (130)
T ss_dssp CHHHHHHHHHHHHHTTCEEE---EESCHHHHHHHHTTC--CC----SEEEECCC-------CHHHHHHHHHTTCC--CCE
T ss_pred CHHHHHHHHHHHHhCCceEE---EeCCHHHHHHHHhcC--CC----CEEEEecCCC--CCCHHHHHHHHHhcCCC--CCE
Confidence 44555566665544322111 112234555556544 33 3778898886 45566777777665464 456
Q ss_pred EEecCchHHHHHHHhhCCC-CceEEecC---CCchHHHHHHHHHhccC
Q psy11447 316 IFIGSLGDQAKRLTQELPA-GRGFVCMD---LTEIPQILQQIFSASLL 359 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~-Gr~fv~~d---t~~lP~il~qIf~s~~l 359 (360)
|++.+-.+..... +.+-+ -..|+... ..+|-+.++.++..+..
T Consensus 83 i~~t~~~~~~~~~-~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~~~ 129 (130)
T 3eod_A 83 LVISATENMADIA-KALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 (130)
T ss_dssp EEEECCCCHHHHH-HHHHHCCSEEEESCC---CHHHHHHHHHHC----
T ss_pred EEEEcCCCHHHHH-HHHHcCCCEEEeCCCCcHHHHHHHHHHHhchhhc
Confidence 7777755544322 22222 34577664 47788888887766543
No 31
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=59.78 E-value=19 Score=28.07 Aligned_cols=105 Identities=13% Similarity=0.190 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|-.. +......|++.+.+. . +-+||.|.++. +.+.-++.+.+....| +.-+
T Consensus 16 ~~~~~~~l~~~L~~~g~~v~---~~~~~~~a~~~l~~~--~----~dlvi~d~~l~--~~~g~~~~~~l~~~~~--~~~i 82 (154)
T 2rjn_A 16 EQPILNSLKRLIKRLGCNII---TFTSPLDALEALKGT--S----VQLVISDMRMP--EMGGEVFLEQVAKSYP--DIER 82 (154)
T ss_dssp CHHHHHHHHHHHHTTTCEEE---EESCHHHHHHHHTTS--C----CSEEEEESSCS--SSCHHHHHHHHHHHCT--TSEE
T ss_pred CHHHHHHHHHHHHHcCCeEE---EeCCHHHHHHHHhcC--C----CCEEEEecCCC--CCCHHHHHHHHHHhCC--CCcE
Confidence 45566666666654333221 122234555555443 3 44777788886 4566677777766435 4567
Q ss_pred EEecCchHHHHHHHhhCCCC--ceEEec--CCCchHHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAG--RGFVCM--DLTEIPQILQQIF 354 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G--r~fv~~--dt~~lP~il~qIf 354 (360)
|++++..+ ...+.+.+..| ..|+.. +..+|-..++.++
T Consensus 83 i~ls~~~~-~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~ 124 (154)
T 2rjn_A 83 VVISGYAD-AQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGL 124 (154)
T ss_dssp EEEECGGG-HHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEEecCCC-HHHHHHHHhccchheeeeCCCCHHHHHHHHHHHH
Confidence 88877555 34455555555 567765 3345555555554
No 32
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=59.35 E-value=52 Score=24.55 Aligned_cols=93 Identities=11% Similarity=0.140 Sum_probs=52.9
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|-.. +......|++.+.+. ..| +||.|.++. +.+.-++.+.+....+.-...+
T Consensus 15 ~~~~~~~l~~~L~~~g~~v~---~~~~~~~a~~~l~~~--~~d----lii~d~~l~--~~~g~~~~~~l~~~~~~~~~~i 83 (132)
T 3lte_A 15 DQAMAAAIERVLKRDHWQVE---IAHNGFDAGIKLSTF--EPA----IMTLDLSMP--KLDGLDVIRSLRQNKVANQPKI 83 (132)
T ss_dssp CHHHHHHHHHHHHHTTCEEE---EESSHHHHHHHHHHT--CCS----EEEEESCBT--TBCHHHHHHHHHTTTCSSCCEE
T ss_pred CHHHHHHHHHHHHHCCcEEE---EeCCHHHHHHHHHhc--CCC----EEEEecCCC--CCCHHHHHHHHHhcCccCCCeE
Confidence 45566666666654333211 222334555555544 444 778899987 4667788888877633345677
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEec
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCM 341 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~ 341 (360)
|++++..++ .+.+.+-+| ..|+..
T Consensus 84 i~~~~~~~~--~~~~~~~~g~~~~l~k 108 (132)
T 3lte_A 84 LVVSGLDKA--KLQQAVTEGADDYLEK 108 (132)
T ss_dssp EEECCSCSH--HHHHHHHHTCCEEECS
T ss_pred EEEeCCChH--HHHHHHHhChHHHhhC
Confidence 777775555 333444444 345554
No 33
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=58.39 E-value=26 Score=26.17 Aligned_cols=107 Identities=11% Similarity=0.069 Sum_probs=57.8
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|....=. ....|++.+.+. ..+=+||.|.++.. +.+.-++.+.+....| +.-+
T Consensus 14 ~~~~~~~l~~~L~~~g~~v~~~~---~~~~a~~~l~~~-----~~~dlvi~d~~l~~-~~~g~~~~~~l~~~~~--~~~i 82 (132)
T 2rdm_A 14 EAILLLDFESTLTDAGFLVTAVS---SGAKAIEMLKSG-----AAIDGVVTDIRFCQ-PPDGWQVARVAREIDP--NMPI 82 (132)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEES---SHHHHHHHHHTT-----CCCCEEEEESCCSS-SSCHHHHHHHHHHHCT--TCCE
T ss_pred cHHHHHHHHHHHHHcCCEEEEEC---CHHHHHHHHHcC-----CCCCEEEEeeeCCC-CCCHHHHHHHHHhcCC--CCCE
Confidence 44555566665554444322212 223444444331 12346777888852 1555566666666535 4567
Q ss_pred EEecCchHHHHHHHhhCCCCceEEecC--CCchHHHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAGRGFVCMD--LTEIPQILQQIFS 355 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~Gr~fv~~d--t~~lP~il~qIf~ 355 (360)
|++++.++. +...+.+.+| .|+..- ..+|-..+++++.
T Consensus 83 i~~s~~~~~-~~~~~~~~~~-~~l~kP~~~~~l~~~i~~~~~ 122 (132)
T 2rdm_A 83 VYISGHAAL-EWASNGVPDS-IILEKPFTSAQLITAVSQLLN 122 (132)
T ss_dssp EEEESSCCT-THHHHSCTTC-EEEESSCCHHHHHHHHHHHHH
T ss_pred EEEeCCccH-HHHHhhcCCc-ceEeCCCCHHHHHHHHHHHHh
Confidence 778775543 4456677777 788763 3455555555543
No 34
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=57.24 E-value=49 Score=33.92 Aligned_cols=84 Identities=7% Similarity=0.074 Sum_probs=55.9
Q ss_pred chHHHHHHHHHHHh-------hccccCCcch--HHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCC-----ChhHHH
Q psy11447 236 NKQRLEVIKIMHAH-------AQFCASGDYT--LESIRASIQDLTTECAQHDDSILIVLSDANLDRYGI-----APREMG 301 (360)
Q Consensus 236 ~keRl~vl~~M~aH-------~Qfc~sGD~T--lea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI-----~p~~l~ 301 (360)
+.+.++.|+.+... .++-+ |+.| .+|+..|++.+.+.......+-+|+|||.+=--=+. .|...+
T Consensus 112 ~~~~ik~l~~l~~~~~~~~~~~~~g~-~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~~~~~~~~~~~~a 190 (609)
T 1jey_A 112 GAKRILELDQFKGQQGQKRFQDMMGH-GSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKA 190 (609)
T ss_dssp CHHHHHHHHTTSHHHHHHHHHHHHCC-SCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhcccchhhhhhcCC-CCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCCchHHHHHHHHHH
Confidence 55677777776541 12222 4544 899999999996431122478999999954322122 567777
Q ss_pred HHHhcCcccccEEEEEecCch
Q psy11447 302 EALNAEAASVRAYAIFIGSLG 322 (360)
Q Consensus 302 ~~l~~~~p~V~a~~IfIgslg 322 (360)
..|.. -.|+-++|.||+-|
T Consensus 191 ~~l~~--~gI~i~~igig~~~ 209 (609)
T 1jey_A 191 GDLRD--TGIFLDLMHLKKPG 209 (609)
T ss_dssp HHHHH--HTEEEEEEEBCCTT
T ss_pred HHHHh--cCcEEEEEecCCCC
Confidence 77766 68999999999854
No 35
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=55.99 E-value=16 Score=28.62 Aligned_cols=105 Identities=14% Similarity=0.193 Sum_probs=60.9
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|-.. +......|++.+.+. . +=+||.|.++. +...-++.+.|....|. .-+
T Consensus 23 ~~~~~~~l~~~L~~~g~~v~---~~~~~~~a~~~l~~~--~----~dlvi~D~~l~--~~~g~~~~~~l~~~~~~--~~i 89 (153)
T 3hv2_A 23 QEVILQRLQQLLSPLPYTLH---FARDATQALQLLASR--E----VDLVISAAHLP--QMDGPTLLARIHQQYPS--TTR 89 (153)
T ss_dssp CHHHHHHHHHHHTTSSCEEE---EESSHHHHHHHHHHS--C----CSEEEEESCCS--SSCHHHHHHHHHHHCTT--SEE
T ss_pred CHHHHHHHHHHhcccCcEEE---EECCHHHHHHHHHcC--C----CCEEEEeCCCC--cCcHHHHHHHHHhHCCC--CeE
Confidence 45566667766654433111 222334555555544 3 44788899987 56777777777665454 457
Q ss_pred EEecCchHHHHHHHhhCCCC--ceEEecC--CCchHHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAG--RGFVCMD--LTEIPQILQQIF 354 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G--r~fv~~d--t~~lP~il~qIf 354 (360)
|++.+-.+. +.+.+.+.+| ..|+... ..+|-..++.++
T Consensus 90 i~~s~~~~~-~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l 131 (153)
T 3hv2_A 90 ILLTGDPDL-KLIAKAINEGEIYRYLSKPWDDQELLLALRQAL 131 (153)
T ss_dssp EEECCCCCH-HHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHH
T ss_pred EEEECCCCH-HHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHH
Confidence 888775554 3445556666 5677763 344555555544
No 36
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=55.59 E-value=66 Score=24.49 Aligned_cols=68 Identities=12% Similarity=0.283 Sum_probs=40.9
Q ss_pred EEEEEecCCccccCCChhHHHHHHhcC-cccccEEEEEecCchHHHHHHHhhCCCC-ceEEecC--CCchHHHHHHH
Q psy11447 281 ILIVLSDANLDRYGIAPREMGEALNAE-AASVRAYAIFIGSLGDQAKRLTQELPAG-RGFVCMD--LTEIPQILQQI 353 (360)
Q Consensus 281 fVivlSDANL~RYgI~p~~l~~~l~~~-~p~V~a~~IfIgslgdqA~~l~~~Lp~G-r~fv~~d--t~~lP~il~qI 353 (360)
+=+||.|-++. |++--++.+.|... .+. .-+|++.+.++... ..+.+-+| ..|+..- ..+|-+.++++
T Consensus 53 ~dlvllD~~mp--~~~G~~~~~~lr~~~~~~--~~ii~lt~~~~~~~-~~~~~~~ga~~~l~KP~~~~~L~~~l~~~ 124 (133)
T 2r25_B 53 YNMIFMDVQMP--KVDGLLSTKMIRRDLGYT--SPIVALTAFADDSN-IKECLESGMNGFLSKPIKRPKLKTILTEF 124 (133)
T ss_dssp CSEEEECSCCS--SSCHHHHHHHHHHHSCCC--SCEEEEESCCSHHH-HHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred CCEEEEeCCCC--CCChHHHHHHHHhhcCCC--CCEEEEECCCCHHH-HHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 44888899996 45556777777652 233 46888887666543 33333344 5677764 34555555544
No 37
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=55.35 E-value=54 Score=24.79 Aligned_cols=105 Identities=10% Similarity=0.157 Sum_probs=55.5
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|... +......|++.+... ..| +||.|.++. +++--++.+.+....| +.-+
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~---~~~~~~~al~~~~~~--~~d----lvl~D~~l~--~~~g~~~~~~l~~~~~--~~~i 78 (132)
T 3crn_A 12 DTAILDSTKQILEFEGYEVE---IAATAGEGLAKIENE--FFN----LALFXIKLP--DMEGTELLEKAHKLRP--GMKK 78 (132)
T ss_dssp CHHHHHHHHHHHHHTTCEEE---EESSHHHHHHHHHHS--CCS----EEEECSBCS--SSBHHHHHHHHHHHCT--TSEE
T ss_pred CHHHHHHHHHHHHHCCceEE---EeCCHHHHHHHHhcC--CCC----EEEEecCCC--CCchHHHHHHHHhhCC--CCcE
Confidence 44555666666654333221 111223445555443 333 777898886 4555666666765435 4567
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEecC--CCchHHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCMD--LTEIPQILQQIF 354 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~d--t~~lP~il~qIf 354 (360)
|++++.++.. ...+.+.+| ..|+... ..+|-..++.++
T Consensus 79 i~~s~~~~~~-~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 119 (132)
T 3crn_A 79 IMVTGYASLE-NSVFSLNAGADAYIMKPVNPRDLLEKIKEKL 119 (132)
T ss_dssp EEEESCCCHH-HHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEEeccccHH-HHHHHHhccchhhccCCCCHHHHHHHHHHHH
Confidence 8887765433 333333344 5677663 344555554443
No 38
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=54.28 E-value=7.8 Score=34.53 Aligned_cols=36 Identities=28% Similarity=0.376 Sum_probs=25.6
Q ss_pred cchHHHHHHHHHHHHhhcccCC-----CeEEEEEecCCcccc
Q psy11447 257 DYTLESIRASIQDLTTECAQHD-----DSILIVLSDANLDRY 293 (360)
Q Consensus 257 D~Tlea~~~ai~~~a~~~~daD-----e~fVivlSDANL~RY 293 (360)
.||++|.+.|++.=+. ..|.| |..+||+-|.+|+|-
T Consensus 21 ENTl~Af~~A~~~Gad-~iE~DV~lTkDg~lVv~HD~~l~R~ 61 (247)
T 2otd_A 21 ENTLAAIDVGAKYGHK-MIEFDAKLSKDGEIFLLHDDNLERT 61 (247)
T ss_dssp SSSHHHHHHHHHTTCS-EEEEEEEECTTCCEEECSSSBSSTT
T ss_pred chhHHHHHHHHHcCCC-EEEEEeeEccCCcEEEECCCCcccc
Confidence 6899999999975321 11222 467889999999873
No 39
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=53.10 E-value=46 Score=25.46 Aligned_cols=109 Identities=14% Similarity=0.126 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|.+.= .+......|++.+.+. . +=+||.|.++. +...-++.+.|.+....-+.-+
T Consensus 14 ~~~~~~~l~~~L~~~~~~~~v-~~~~~~~~a~~~l~~~--~----~dlii~D~~l~--~~~g~~~~~~lr~~~~~~~~pi 84 (144)
T 3kht_A 14 NPDDIALIRRVLDRKDIHCQL-EFVDNGAKALYQVQQA--K----YDLIILDIGLP--IANGFEVMSAVRKPGANQHTPI 84 (144)
T ss_dssp CHHHHHHHHHHHHHTTCCEEE-EEESSHHHHHHHHTTC--C----CSEEEECTTCG--GGCHHHHHHHHHSSSTTTTCCE
T ss_pred CHHHHHHHHHHHHhcCCCeeE-EEECCHHHHHHHhhcC--C----CCEEEEeCCCC--CCCHHHHHHHHHhcccccCCCE
Confidence 455666677766554332000 1122234555555443 3 34777899987 4567788888877422334557
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEecCC---CchHHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCMDL---TEIPQILQQIF 354 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~dt---~~lP~il~qIf 354 (360)
|++.+-.+.. .+.+.+-+| ..|+.... .+|-+.++.++
T Consensus 85 i~~s~~~~~~-~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l 126 (144)
T 3kht_A 85 VILTDNVSDD-RAKQCMAAGASSVVDKSSNNVTDFYGRIYAIF 126 (144)
T ss_dssp EEEETTCCHH-HHHHHHHTTCSEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEeCCCCHH-HHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH
Confidence 7777744443 333344444 56776643 44444444443
No 40
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=51.41 E-value=40 Score=36.68 Aligned_cols=56 Identities=13% Similarity=0.220 Sum_probs=36.5
Q ss_pred CCCchHHHHHHHHHHHhh---------ccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecC
Q psy11447 233 PRDNKQRLEVIKIMHAHA---------QFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDA 288 (360)
Q Consensus 233 Pk~~keRl~vl~~M~aH~---------Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDA 288 (360)
.+++++.+..|+...... .+..-|=++-.|++.|++.+.+.....-...+|+|||-
T Consensus 324 LT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~~~~~~kvIILLTDG 388 (893)
T 2ww8_A 324 LTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQNSQKVIFHITDG 388 (893)
T ss_dssp EECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHSCSSSEEEEEEEESS
T ss_pred ccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhcccCCCeEEEEEcCC
Confidence 356777777676665432 12334567789999999988642102345799999994
No 41
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=50.90 E-value=75 Score=23.76 Aligned_cols=95 Identities=11% Similarity=0.105 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+..-.+.++.+.....|-.. +......|++.+.+. ..| +||.|-++. |.+--++.+.|.+..+.-+.-+
T Consensus 11 ~~~~~~~l~~~l~~~g~~v~---~~~~~~~al~~l~~~--~~d----lvllD~~~p--~~~g~~~~~~l~~~~~~~~~pi 79 (122)
T 3gl9_A 11 SAVLRKIVSFNLKKEGYEVI---EAENGQIALEKLSEF--TPD----LIVLXIMMP--VMDGFTVLKKLQEKEEWKRIPV 79 (122)
T ss_dssp CHHHHHHHHHHHHHTTCEEE---EESSHHHHHHHHTTB--CCS----EEEECSCCS--SSCHHHHHHHHHTSTTTTTSCE
T ss_pred CHHHHHHHHHHHHHCCcEEE---EeCCHHHHHHHHHhc--CCC----EEEEeccCC--CCcHHHHHHHHHhcccccCCCE
Confidence 34444555555543332110 122234556666544 333 778899886 5667778787866522334567
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEecC
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCMD 342 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~d 342 (360)
|++.+.++..... +.+-+| ..|+...
T Consensus 80 i~~s~~~~~~~~~-~~~~~Ga~~~l~KP 106 (122)
T 3gl9_A 80 IVLTAKGGEEDES-LALSLGARKVMRKP 106 (122)
T ss_dssp EEEESCCSHHHHH-HHHHTTCSEEEESS
T ss_pred EEEecCCchHHHH-HHHhcChhhhccCC
Confidence 8888766554433 223333 5677663
No 42
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=50.74 E-value=64 Score=24.05 Aligned_cols=106 Identities=12% Similarity=0.203 Sum_probs=57.5
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.. ..|-.. +......|++.+.+. . +=+||.|.++. +.+.-++.+.+....+.-+.-+
T Consensus 13 ~~~~~~~l~~~l~-~~~~v~---~~~~~~~a~~~l~~~--~----~dlvi~d~~l~--~~~g~~~~~~l~~~~~~~~~pi 80 (133)
T 3nhm_A 13 SWTMRETLRLLLS-GEFDCT---TAADGASGLQQALAH--P----PDVLISDVNMD--GMDGYALCGHFRSEPTLKHIPV 80 (133)
T ss_dssp CHHHHHHHHHHHT-TTSEEE---EESSHHHHHHHHHHS--C----CSEEEECSSCS--SSCHHHHHHHHHHSTTTTTCCE
T ss_pred CHHHHHHHHHHHh-CCcEEE---EECCHHHHHHHHhcC--C----CCEEEEeCCCC--CCCHHHHHHHHHhCCccCCCCE
Confidence 4455556666655 222111 222234555555544 3 33788899986 4777888888887633345668
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEec--CCCchHHHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCM--DLTEIPQILQQIFS 355 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~--dt~~lP~il~qIf~ 355 (360)
|++.+..++.. .+.+-+| ..|+.. +..+|-..++.++.
T Consensus 81 i~~s~~~~~~~--~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 121 (133)
T 3nhm_A 81 IFVSGYAPRTE--GPADQPVPDAYLVKPVKPPVLIAQLHALLA 121 (133)
T ss_dssp EEEESCCC-------TTSCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEeCCCcHhH--HHHhhcCCceEEeccCCHHHHHHHHHHHHh
Confidence 88888666555 4555555 446665 33345555555443
No 43
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=49.30 E-value=40 Score=26.47 Aligned_cols=108 Identities=13% Similarity=0.188 Sum_probs=61.0
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|-. .+......|++.+.+. . +=+||.|.++. +...-++.+.|......-+.-+
T Consensus 16 ~~~~~~~l~~~L~~~g~~v---~~~~~~~~al~~l~~~--~----~dlii~D~~l~--~~~g~~~~~~lr~~~~~~~~pi 84 (154)
T 3gt7_A 16 SPTQAEHLKHILEETGYQT---EHVRNGREAVRFLSLT--R----PDLIISDVLMP--EMDGYALCRWLKGQPDLRTIPV 84 (154)
T ss_dssp CHHHHHHHHHHHHTTTCEE---EEESSHHHHHHHHTTC--C----CSEEEEESCCS--SSCHHHHHHHHHHSTTTTTSCE
T ss_pred CHHHHHHHHHHHHHCCCEE---EEeCCHHHHHHHHHhC--C----CCEEEEeCCCC--CCCHHHHHHHHHhCCCcCCCCE
Confidence 5566667777766543321 1222345566666544 3 34788898886 4667788888877622245567
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEec--CCCchHHHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCM--DLTEIPQILQQIFS 355 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~--dt~~lP~il~qIf~ 355 (360)
|++.+..+.... .+.+-+| ..|+.. +..+|-..++.++.
T Consensus 85 i~~s~~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 85 ILLTILSDPRDV-VRSLECGADDFITKPCKDVVLASHVKRLLS 126 (154)
T ss_dssp EEEECCCSHHHH-HHHHHHCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEECCCChHHH-HHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 777765554332 2333333 456665 34455566665554
No 44
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=49.02 E-value=43 Score=25.56 Aligned_cols=107 Identities=11% Similarity=0.134 Sum_probs=58.0
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+..-.+.++.+.....|... +......|++.+... . +=+||.|-++. |.+--++.+.|....+.-+.-+
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~---~~~~~~~al~~l~~~--~----~dlvi~D~~l~--~~~g~~~~~~l~~~~~~~~~~i 80 (138)
T 3c3m_A 12 SPMIVDVFVTMLERGGYRPI---TAFSGEECLEALNAT--P----PDLVLLDIMME--PMDGWETLERIKTDPATRDIPV 80 (138)
T ss_dssp CHHHHHHHHHHHHHTTCEEE---EESSHHHHHHHHHHS--C----CSEEEEESCCS--SSCHHHHHHHHHHSTTTTTSCE
T ss_pred CHHHHHHHHHHHHHcCceEE---EeCCHHHHHHHHhcc--C----CCEEEEeCCCC--CCCHHHHHHHHHcCcccCCCCE
Confidence 34455566665554333211 111233445555443 3 33778899886 4566677777876523345667
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEecC--CCchHHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCMD--LTEIPQILQQIF 354 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~d--t~~lP~il~qIf 354 (360)
|++.+.++.+.. ...+.+| ..|+..- ..+|-..++.++
T Consensus 81 i~ls~~~~~~~~-~~~~~~~~~~~l~KP~~~~~L~~~i~~~~ 121 (138)
T 3c3m_A 81 LMLTAKPLTPEE-ANEYGSYIEDYILKPTTHHQLYEAIEHVL 121 (138)
T ss_dssp EEEESSCCCHHH-HHHTTTTCSEEEECCCHHHHHHHHHHHHH
T ss_pred EEEECCCChHHH-HHHhhcCHhheEeCCCCHHHHHHHHHHHH
Confidence 888765544433 3445555 6788763 334555555443
No 45
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=48.87 E-value=41 Score=33.65 Aligned_cols=102 Identities=13% Similarity=0.098 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhhccccCCcch--HHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcC-cccccEE
Q psy11447 238 QRLEVIKIMHAHAQFCASGDYT--LESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAE-AASVRAY 314 (360)
Q Consensus 238 eRl~vl~~M~aH~Qfc~sGD~T--lea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~-~p~V~a~ 314 (360)
.-.+.++.+.. + .|..| -+|+..|++. ..--..||+|||-.-.--.++|.+..+.+... .+.|+.|
T Consensus 429 ~l~~~l~~l~~--~---~~GgT~i~~aL~~a~~~------~~~~~~iIliTDg~~~~g~~~~~~~l~~~~~~~~~~v~l~ 497 (538)
T 1yvr_A 429 LLHEVVEKMSD--I---TMGSTDCALPMLWAQKT------NTAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLI 497 (538)
T ss_dssp CHHHHHHHHTT--C---CCSCCCTTHHHHHHHHT------TCCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEE
T ss_pred cHHHHHHHHhc--C---CCCCCcHHHHHHHHHhc------cCCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCcEEE
Confidence 35555666542 2 23344 4666666654 22237899999964333235676655554432 2677779
Q ss_pred EEEecCchHHHHHHHhhCCCCceEEecCCCchHHHHHHH
Q psy11447 315 AIFIGSLGDQAKRLTQELPAGRGFVCMDLTEIPQILQQI 353 (360)
Q Consensus 315 ~IfIgslgdqA~~l~~~Lp~Gr~fv~~dt~~lP~il~qI 353 (360)
+|-||+-+.. +...-..|...++-=...+++.+..+
T Consensus 498 ~igig~~~~~---~~~~~~~~~~~i~g~~e~~l~~Ia~~ 533 (538)
T 1yvr_A 498 VCAMTSNGFS---IADPDDRGMLDICGFDSGALDVIRNF 533 (538)
T ss_dssp EEECSSSSEE---SSCTTCTTEEEEETTCTTHHHHHHHH
T ss_pred EEEecCCCCc---ccCCCCCCceeeccCCHHHHHHHHHH
Confidence 9999985431 11112246677776666777666553
No 46
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=48.08 E-value=68 Score=23.40 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=54.5
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|-.. +......|++.+.+. ..| +++.|.++. +.+--++.+.|....|. .-+
T Consensus 9 ~~~~~~~l~~~l~~~g~~v~---~~~~~~~a~~~~~~~--~~d----lil~D~~l~--~~~g~~~~~~l~~~~~~--~~i 75 (121)
T 2pl1_A 9 NALLRHHLKVQIQDAGHQVD---DAEDAKEADYYLNEH--IPD----IAIVDLGLP--DEDGLSLIRRWRSNDVS--LPI 75 (121)
T ss_dssp CHHHHHHHHHHHHHTTCEEE---EESSHHHHHHHHHHS--CCS----EEEECSCCS--SSCHHHHHHHHHHTTCC--SCE
T ss_pred cHHHHHHHHHHHhhcCCEEE---EeCCHHHHHHHHhcc--CCC----EEEEecCCC--CCCHHHHHHHHHhcCCC--CCE
Confidence 34445555555543333211 122233445555443 333 667799886 45666777777665354 457
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEecC--CCchHHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCMD--LTEIPQILQQIF 354 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~d--t~~lP~il~qIf 354 (360)
|++++.++.... .+.+.+| ..|+..- ..+|-..++.+.
T Consensus 76 i~~s~~~~~~~~-~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 116 (121)
T 2pl1_A 76 LVLTARESWQDK-VEVLSAGADDYVTKPFHIEEVMARMQALM 116 (121)
T ss_dssp EEEESCCCHHHH-HHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEEecCCCHHHH-HHHHHcCccceEECCCCHHHHHHHHHHHH
Confidence 788775554433 3444444 4676653 334444554443
No 47
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=46.56 E-value=68 Score=24.11 Aligned_cols=107 Identities=12% Similarity=0.207 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHHhhccc--cCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccE
Q psy11447 236 NKQRLEVIKIMHAHAQFC--ASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRA 313 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc--~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a 313 (360)
+..-.+.++.+....-|. ..-.+.. .|+..+... ..+-+||.|.++. +.+--++.+.|.+..+.-+.
T Consensus 14 ~~~~~~~l~~~L~~~g~~~v~~~~~~~----~a~~~~~~~-----~~~dlvi~D~~~p--~~~g~~~~~~lr~~~~~~~~ 82 (129)
T 3h1g_A 14 SSTMRRIIKNTLSRLGYEDVLEAEHGV----EAWEKLDAN-----ADTKVLITDWNMP--EMNGLDLVKKVRSDSRFKEI 82 (129)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEESSHH----HHHHHHHHC-----TTCCEEEECSCCS--SSCHHHHHHHHHTSTTCTTC
T ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCHH----HHHHHHHhC-----CCCCEEEEeCCCC--CCCHHHHHHHHHhcCCCCCC
Confidence 456667777776554442 2222333 344444322 1233778899986 56677888888765223355
Q ss_pred EEEEecCchHHHHHHHhhCCCC-ceEEecC--CCchHHHHHHHH
Q psy11447 314 YAIFIGSLGDQAKRLTQELPAG-RGFVCMD--LTEIPQILQQIF 354 (360)
Q Consensus 314 ~~IfIgslgdqA~~l~~~Lp~G-r~fv~~d--t~~lP~il~qIf 354 (360)
-+|++.+.++.... .+.+.+| ..|+..- ..+|-..++.++
T Consensus 83 pii~~s~~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~l~~~l 125 (129)
T 3h1g_A 83 PIIMITAEGGKAEV-ITALKAGVNNYIVKPFTPQVLKEKLEVVL 125 (129)
T ss_dssp CEEEEESCCSHHHH-HHHHHHTCCEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEEeCCCChHHH-HHHHHcCccEEEeCCCCHHHHHHHHHHHh
Confidence 68888886665433 2333334 4577653 334444555444
No 48
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=46.35 E-value=81 Score=22.83 Aligned_cols=104 Identities=18% Similarity=0.253 Sum_probs=53.2
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|... +......|++.+.+. ..| +++.|.++. +.+--++.+.+... |.+ -+
T Consensus 10 ~~~~~~~l~~~l~~~~~~v~---~~~~~~~a~~~~~~~--~~d----lvl~D~~l~--~~~g~~~~~~l~~~-~~~--~i 75 (120)
T 2a9o_A 10 EKPISDIIKFNMTKEGYEVV---TAFNGREALEQFEAE--QPD----IIILDLMLP--EIDGLEVAKTIRKT-SSV--PI 75 (120)
T ss_dssp CHHHHHHHHHHHHHTTCEEE---EESSHHHHHHHHHHH--CCS----EEEECSSCS--SSCHHHHHHHHHHH-CCC--CE
T ss_pred CHHHHHHHHHHHHhcCcEEE---EecCHHHHHHHHHhC--CCC----EEEEeccCC--CCCHHHHHHHHHhC-CCC--CE
Confidence 34445555555544333221 122234455555444 333 667799886 45556777777664 543 46
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEecC--CCchHHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCMD--LTEIPQILQQIF 354 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~d--t~~lP~il~qIf 354 (360)
|++.+..+... ..+.+.+| ..|+... ..+|-..++.++
T Consensus 76 i~~s~~~~~~~-~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 116 (120)
T 2a9o_A 76 LMLSAKDSEFD-KVIGLELGADDYVTKPFSNRELQARVKALL 116 (120)
T ss_dssp EEEESCCSHHH-HHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEEecCCchHH-HHHHHhCCHhheEeCCCCHHHHHHHHHHHH
Confidence 77766454332 22333333 5677663 335555555544
No 49
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=44.99 E-value=96 Score=23.25 Aligned_cols=106 Identities=13% Similarity=0.142 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+..-.+.++.+.....|...+=.+ ...|...+.+. ..+-+||.|.++. +.+.-++.+.|.+. +.-+.-+
T Consensus 16 ~~~~~~~l~~~L~~~g~~v~~~~~---~~~a~~~~~~~-----~~~dlvi~D~~l~--~~~g~~~~~~l~~~-~~~~~~i 84 (136)
T 3hdv_A 16 NAVNREALILYLKSRGIDAVGADG---AEEARLYLHYQ-----KRIGLMITDLRMQ--PESGLDLIRTIRAS-ERAALSI 84 (136)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESS---HHHHHHHHHHC-----TTEEEEEECSCCS--SSCHHHHHHHHHTS-TTTTCEE
T ss_pred CHHHHHHHHHHHHHcCceEEEeCC---HHHHHHHHHhC-----CCCcEEEEeccCC--CCCHHHHHHHHHhc-CCCCCCE
Confidence 455666777776655454433222 23344444433 1366888999987 56777888888775 3345567
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEec--CCCchHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCM--DLTEIPQILQQI 353 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~--dt~~lP~il~qI 353 (360)
|++++-.+.. ...+.+-+| ..|+.. +..+|-..+++.
T Consensus 85 i~~s~~~~~~-~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 124 (136)
T 3hdv_A 85 IVVSGDTDVE-EAVDVMHLGVVDFLLKPVDLGKLLELVNKE 124 (136)
T ss_dssp EEEESSCCHH-HHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred EEEeCCCChH-HHHHHHhCCcceEEeCCCCHHHHHHHHHHH
Confidence 8887755543 333333344 455554 333444444443
No 50
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=44.96 E-value=94 Score=23.16 Aligned_cols=108 Identities=16% Similarity=0.263 Sum_probs=58.5
Q ss_pred chHHHHHHHHHHHhh-ccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEE
Q psy11447 236 NKQRLEVIKIMHAHA-QFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAY 314 (360)
Q Consensus 236 ~keRl~vl~~M~aH~-Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~ 314 (360)
+....+.++.+.... .|...+ +......|++.+... ..| +++.|-++. +.+--++.+.|... ..-..-
T Consensus 11 ~~~~~~~l~~~l~~~~~~~~~~--~~~~~~~a~~~~~~~--~~d----lvllD~~l~--~~~g~~~~~~l~~~-~~~~~~ 79 (130)
T 1dz3_A 11 NRELVSLLDEYISSQPDMEVIG--TAYNGQDCLQMLEEK--RPD----ILLLDIIMP--HLDGLAVLERIRAG-FEHQPN 79 (130)
T ss_dssp CHHHHHHHHHHHHTSTTEEEEE--EESSHHHHHHHHHHH--CCS----EEEEESCCS--SSCHHHHHHHHHHH-CSSCCE
T ss_pred CHHHHHHHHHHHHhCCCceEEE--EeCCHHHHHHHHhcC--CCC----EEEEecCCC--CCCHHHHHHHHHhc-CCCCCc
Confidence 445566666665432 232111 111233445555444 333 777898886 45556666666653 122446
Q ss_pred EEEecCchHHHHHHHhhCCCC-ceEEec--CCCchHHHHHHHHH
Q psy11447 315 AIFIGSLGDQAKRLTQELPAG-RGFVCM--DLTEIPQILQQIFS 355 (360)
Q Consensus 315 ~IfIgslgdqA~~l~~~Lp~G-r~fv~~--dt~~lP~il~qIf~ 355 (360)
+|++++.++.. ...+.+.+| ..|+.. +..+|-..+++++.
T Consensus 80 ii~ls~~~~~~-~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 122 (130)
T 1dz3_A 80 VIMLTAFGQED-VTKKAVELGASYFILKPFDMENLAHHIRQVYG 122 (130)
T ss_dssp EEEEEETTCHH-HHHHHHHTTCEEEEECSSCCTTHHHHHHHHHH
T ss_pred EEEEecCCCHH-HHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 77777755543 333444444 456665 56778888877764
No 51
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=44.60 E-value=89 Score=23.17 Aligned_cols=105 Identities=15% Similarity=0.133 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|... +......+++.+... .+=+++.|.++. +.+--++.+.|....|. .-+
T Consensus 12 ~~~~~~~l~~~l~~~~~~v~---~~~~~~~~~~~~~~~------~~dlvi~D~~l~--~~~g~~~~~~l~~~~~~--~~i 78 (126)
T 1dbw_A 12 EEPVRKSLAFMLTMNGFAVK---MHQSAEAFLAFAPDV------RNGVLVTDLRMP--DMSGVELLRNLGDLKIN--IPS 78 (126)
T ss_dssp SHHHHHHHHHHHHHTTCEEE---EESCHHHHHHHGGGC------CSEEEEEECCST--TSCHHHHHHHHHHTTCC--CCE
T ss_pred CHHHHHHHHHHHHhCCcEEE---EeCCHHHHHHHHhcC------CCCEEEEECCCC--CCCHHHHHHHHHhcCCC--CCE
Confidence 34445555555543333211 111223444444433 234788899886 45666777777665354 457
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEecC--CCchHHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCMD--LTEIPQILQQIF 354 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~d--t~~lP~il~qIf 354 (360)
|++++.++. ....+.+.+| ..|+... ..+|-..++.++
T Consensus 79 i~~s~~~~~-~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~ 119 (126)
T 1dbw_A 79 IVITGHGDV-PMAVEAMKAGAVDFIEKPFEDTVIIEAIERAS 119 (126)
T ss_dssp EEEECTTCH-HHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEEECCCCH-HHHHHHHHhCHHHheeCCCCHHHHHHHHHHHH
Confidence 888775553 3334444444 4677763 334555555443
No 52
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=44.58 E-value=1.1e+02 Score=23.64 Aligned_cols=115 Identities=12% Similarity=0.156 Sum_probs=61.0
Q ss_pred CchHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhc---ccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccc
Q psy11447 235 DNKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTEC---AQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASV 311 (360)
Q Consensus 235 ~~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~---~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V 311 (360)
++....+.++.+.....|...=. +......|++.+.... ......+=+||.|.++. +.+.-++.+.|......-
T Consensus 12 dd~~~~~~l~~~L~~~g~~~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~--~~~g~~~~~~lr~~~~~~ 88 (152)
T 3heb_A 12 DDLGHARLIEKNIRRAGVNNEII-AFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLP--DMTGIDILKLVKENPHTR 88 (152)
T ss_dssp CCHHHHHHHHHHHHHTTCCCCEE-EESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCS--SSBHHHHHHHHHHSTTTT
T ss_pred CCHHHHHHHHHHHHhCCCcceEE-EeCCHHHHHHHHhccccccccccCCCCEEEEeCCCC--CCcHHHHHHHHHhccccc
Confidence 35666777777776555411000 1122334455443110 01245677999999997 577778888887741122
Q ss_pred cEEEEEecCchHHHHHHHhhCCCC-ceEEec--CCCchHHHHHHH
Q psy11447 312 RAYAIFIGSLGDQAKRLTQELPAG-RGFVCM--DLTEIPQILQQI 353 (360)
Q Consensus 312 ~a~~IfIgslgdqA~~l~~~Lp~G-r~fv~~--dt~~lP~il~qI 353 (360)
+.-+|++.+..++.. +.+.+.+| ..|+.. +..+|-..++++
T Consensus 89 ~~pii~~t~~~~~~~-~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 132 (152)
T 3heb_A 89 RSPVVILTTTDDQRE-IQRCYDLGANVYITKPVNYENFANAIRQL 132 (152)
T ss_dssp TSCEEEEESCCCHHH-HHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred CCCEEEEecCCCHHH-HHHHHHCCCcEEEeCCCCHHHHHHHHHHH
Confidence 445677776555433 23333334 456655 334455555444
No 53
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=44.55 E-value=78 Score=24.20 Aligned_cols=104 Identities=12% Similarity=0.139 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEEE
Q psy11447 237 KQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAI 316 (360)
Q Consensus 237 keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~I 316 (360)
....+.++.+.....|... +......|++.+... ..| ++|.|.++. +.+--++.+.|....|. .-+|
T Consensus 14 ~~~~~~l~~~L~~~g~~v~---~~~~~~~a~~~l~~~--~~d----lvllD~~l~--~~~g~~l~~~l~~~~~~--~~ii 80 (137)
T 3cfy_A 14 TSLAILYKQYVKDEPYDIF---HVETGRDAIQFIERS--KPQ----LIILDLKLP--DMSGEDVLDWINQNDIP--TSVI 80 (137)
T ss_dssp TTHHHHHHHHTTTSSSEEE---EESSHHHHHHHHHHH--CCS----EEEECSBCS--SSBHHHHHHHHHHTTCC--CEEE
T ss_pred HHHHHHHHHHHHhcCceEE---EeCCHHHHHHHHHhc--CCC----EEEEecCCC--CCCHHHHHHHHHhcCCC--CCEE
Confidence 3445566665543333211 122234455555444 333 788899886 34555666777664354 4578
Q ss_pred EecCchHHHHHHHhhCCCC-ceEEecC--CCchHHHHHHHH
Q psy11447 317 FIGSLGDQAKRLTQELPAG-RGFVCMD--LTEIPQILQQIF 354 (360)
Q Consensus 317 fIgslgdqA~~l~~~Lp~G-r~fv~~d--t~~lP~il~qIf 354 (360)
++++.++. +...+.+.+| ..|+... ..+|-..++.++
T Consensus 81 ~ls~~~~~-~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 120 (137)
T 3cfy_A 81 IATAHGSV-DLAVNLIQKGAEDFLEKPINADRLKTSVALHL 120 (137)
T ss_dssp EEESSCCH-HHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEEecCcH-HHHHHHHHCCccEEEeCCCCHHHHHHHHHHHH
Confidence 88775543 3334444445 4677763 345555555544
No 54
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=43.72 E-value=83 Score=26.96 Aligned_cols=106 Identities=18% Similarity=0.243 Sum_probs=62.1
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+..-.+.++.+.....|-.. +......|++.+... ..| +||.|.+|. +.+--++.+.|.+..| ++-+
T Consensus 32 ~~~~~~~l~~~L~~~g~~v~---~~~~~~~al~~~~~~--~~d----lvllD~~lp--~~~g~~~~~~lr~~~~--~~~i 98 (250)
T 3r0j_A 32 EANIVELLSVSLKFQGFEVY---TATNGAQALDRARET--RPD----AVILDVXMP--GMDGFGVLRRLRADGI--DAPA 98 (250)
T ss_dssp CHHHHHHHHHHHHHTTCEEE---EESSHHHHHHHHHHH--CCS----EEEEESCCS--SSCHHHHHHHHHHTTC--CCCE
T ss_pred CHHHHHHHHHHHHHCCCEEE---EECCHHHHHHHHHhC--CCC----EEEEeCCCC--CCCHHHHHHHHHhcCC--CCCE
Confidence 44555666666654433221 222334555555544 333 788899987 5677788888877645 4567
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEecC--CCchHHHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCMD--LTEIPQILQQIFS 355 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~d--t~~lP~il~qIf~ 355 (360)
|++.+.++.... .+.+-+| ..|+... ..+|-..++.++.
T Consensus 99 i~lt~~~~~~~~-~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 99 LFLTARDSLQDK-IAGLTLGGDDYVTKPFSLEEVVARLRVILR 140 (250)
T ss_dssp EEEECSTTHHHH-HHHHTSTTCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHH-HHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 888886665544 3444444 5677763 3455555655543
No 55
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=43.11 E-value=60 Score=27.30 Aligned_cols=120 Identities=16% Similarity=0.178 Sum_probs=64.4
Q ss_pred CchHHHHHHHHHHHhhcc--ccCCcchHHHHHHHHHHHHhh--ccc-CCCeEEEEEecCCccccCCChhHHHHHHhcCcc
Q psy11447 235 DNKQRLEVIKIMHAHAQF--CASGDYTLESIRASIQDLTTE--CAQ-HDDSILIVLSDANLDRYGIAPREMGEALNAEAA 309 (360)
Q Consensus 235 ~~keRl~vl~~M~aH~Qf--c~sGD~Tlea~~~ai~~~a~~--~~d-aDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p 309 (360)
++..-.++++.+.....| +..=.+.-+|.+..-+..... .+- ....+=+||.|-+|. +.+--++.+.|....+
T Consensus 69 Dd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp--~~~G~el~~~lr~~~~ 146 (206)
T 3mm4_A 69 DNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMP--EMDGYEATREIRKVEK 146 (206)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCS--SSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCC--CCCHHHHHHHHHhhhh
Confidence 355667777777765544 222222223332222211100 000 012456889999995 4677788888876311
Q ss_pred --cccEEEEEecCchHHHHHHHhhCCCC-ceEEecCCCchHHHHHHHHHh
Q psy11447 310 --SVRAYAIFIGSLGDQAKRLTQELPAG-RGFVCMDLTEIPQILQQIFSA 356 (360)
Q Consensus 310 --~V~a~~IfIgslgdqA~~l~~~Lp~G-r~fv~~dt~~lP~il~qIf~s 356 (360)
.-+.-+|++.+..+..+.+.+.+-+| ..|+..-.++|-..++.++..
T Consensus 147 ~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~~L~~~i~~~l~~ 196 (206)
T 3mm4_A 147 SYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLNQLANVIREIESK 196 (206)
T ss_dssp TTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCTTHHHHHHHHC--
T ss_pred hcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHHHHHHHHHHHHhh
Confidence 13455777777552233333333344 579998888888888877643
No 56
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=42.70 E-value=1e+02 Score=22.82 Aligned_cols=107 Identities=15% Similarity=0.236 Sum_probs=56.1
Q ss_pred chHHHHHHHHHHHhhcc-ccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEE
Q psy11447 236 NKQRLEVIKIMHAHAQF-CASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAY 314 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qf-c~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~ 314 (360)
+....+.++.+.....| ... +......|++.+.+. ..| +++.|.++. +.+--++.+.+....+.-+.-
T Consensus 15 ~~~~~~~l~~~L~~~g~~~v~---~~~~~~~a~~~~~~~--~~d----lvl~D~~l~--~~~g~~~~~~l~~~~~~~~~~ 83 (129)
T 1p6q_A 15 QVTSRLLLGDALQQLGFKQIT---AAGDGEQGMKIMAQN--PHH----LVISDFNMP--KMDGLGLLQAVRANPATKKAA 83 (129)
T ss_dssp SHHHHHHHHHHHHTTTCSCEE---CCSSHHHHHHHHHTS--CCS----EEEECSSSC--SSCHHHHHHHHTTCTTSTTCE
T ss_pred CHHHHHHHHHHHHHCCCcEEE---ecCCHHHHHHHHHcC--CCC----EEEEeCCCC--CCCHHHHHHHHhcCccccCCC
Confidence 44556666666654444 111 111123444444433 333 677899986 566677888887651234667
Q ss_pred EEEecCchHHHHHHHhhCCCC-ceEEecC--CCchHHHHHHHH
Q psy11447 315 AIFIGSLGDQAKRLTQELPAG-RGFVCMD--LTEIPQILQQIF 354 (360)
Q Consensus 315 ~IfIgslgdqA~~l~~~Lp~G-r~fv~~d--t~~lP~il~qIf 354 (360)
+|++.+.++... ..+.+-+| ..|+..- ..+|-..++.++
T Consensus 84 ii~~s~~~~~~~-~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (129)
T 1p6q_A 84 FIILTAQGDRAL-VQKAAALGANNVLAKPFTIEKMKAAIEAVF 125 (129)
T ss_dssp EEECCSCCCHHH-HHHHHHHTCSCEECCCSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHH-HHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 888887665433 22222223 4566653 334444444443
No 57
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=42.46 E-value=79 Score=24.41 Aligned_cols=104 Identities=13% Similarity=0.175 Sum_probs=57.0
Q ss_pred chHHHHHHHHHHHhhc--c-ccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCccccc
Q psy11447 236 NKQRLEVIKIMHAHAQ--F-CASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVR 312 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Q--f-c~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~ 312 (360)
+..-.+.++.+..-.. | |..- .....|++.+.+. . +=+||.|.++. +.+.-++.+.+....|.+
T Consensus 29 ~~~~~~~l~~~L~~~~~~~~v~~~----~~~~~al~~l~~~--~----~dlii~D~~l~--~~~g~~~~~~l~~~~~~~- 95 (150)
T 4e7p_A 29 QSMLRDAMCQLLTLQPDVESVLQA----KNGQEAIQLLEKE--S----VDIAILDVEMP--VKTGLEVLEWIRSEKLET- 95 (150)
T ss_dssp CHHHHHHHHHHHHTSTTEEEEEEE----SSHHHHHHHHTTS--C----CSEEEECSSCS--SSCHHHHHHHHHHTTCSC-
T ss_pred CHHHHHHHHHHHHhCCCcEEEEEE----CCHHHHHHHhhcc--C----CCEEEEeCCCC--CCcHHHHHHHHHHhCCCC-
Confidence 4555666666665322 1 1111 2223455555444 3 44888899986 467778888887764654
Q ss_pred EEEEEecCchHHHHHHHhhCCCC-ceEEec--CCCchHHHHHHHH
Q psy11447 313 AYAIFIGSLGDQAKRLTQELPAG-RGFVCM--DLTEIPQILQQIF 354 (360)
Q Consensus 313 a~~IfIgslgdqA~~l~~~Lp~G-r~fv~~--dt~~lP~il~qIf 354 (360)
-+|++.+-.+... +.+.+-+| ..|+.. +..+|-..++.++
T Consensus 96 -~ii~ls~~~~~~~-~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 138 (150)
T 4e7p_A 96 -KVVVVTTFKRAGY-FERAVKAGVDAYVLKERSIADLMQTLHTVL 138 (150)
T ss_dssp -EEEEEESCCCHHH-HHHHHHTTCSEEEETTSCHHHHHHHHHHHH
T ss_pred -eEEEEeCCCCHHH-HHHHHHCCCcEEEecCCCHHHHHHHHHHHH
Confidence 4677777555332 33333334 456665 3345555555544
No 58
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=42.10 E-value=76 Score=23.58 Aligned_cols=92 Identities=12% Similarity=0.160 Sum_probs=50.3
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+..-.+.++.+.....|-.. +......|++.+.+. ..| +++.|.++. |.+--++.+.+.+. +. .-+
T Consensus 11 ~~~~~~~l~~~L~~~g~~v~---~~~~~~~al~~~~~~--~~d----lii~D~~~p--~~~g~~~~~~lr~~-~~--~~i 76 (120)
T 3f6p_A 11 EKPIADILEFNLRKEGYEVH---CAHDGNEAVEMVEEL--QPD----LILLDIMLP--NKDGVEVCREVRKK-YD--MPI 76 (120)
T ss_dssp CHHHHHHHHHHHHHTTCEEE---EESSHHHHHHHHHTT--CCS----EEEEETTST--TTHHHHHHHHHHTT-CC--SCE
T ss_pred CHHHHHHHHHHHHhCCEEEE---EeCCHHHHHHHHhhC--CCC----EEEEeCCCC--CCCHHHHHHHHHhc-CC--CCE
Confidence 44555666666654444221 112233455555544 333 788899986 45566777777765 54 346
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEecC
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCMD 342 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~d 342 (360)
|++.+.++..... +.+.+| ..|+...
T Consensus 77 i~~t~~~~~~~~~-~~~~~ga~~~l~KP 103 (120)
T 3f6p_A 77 IMLTAKDSEIDKV-IGLEIGADDYVTKP 103 (120)
T ss_dssp EEEEESSCHHHHH-HHHHTTCCEEEEES
T ss_pred EEEECCCChHHHH-HHHhCCcceeEcCC
Confidence 7777655554333 223333 4677653
No 59
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=41.04 E-value=94 Score=30.28 Aligned_cols=144 Identities=15% Similarity=0.183 Sum_probs=82.1
Q ss_pred CCchhhHHHHhhcc---ccceeEeeeeccC---CCCcccc-ccCCCCCCCchHHHHHHHHHHH-hhccccCCcchHHHHH
Q psy11447 193 GSDLGTSLEAFQDF---DQRISLDIIGHSG---ETHSIPF-VTSNNLPRDNKQRLEVIKIMHA-HAQFCASGDYTLESIR 264 (360)
Q Consensus 193 ~~DL~rvMEaf~g~---e~k~~ydivGHSG---d~~~i~l-V~~~~~Pk~~keRl~vl~~M~a-H~Qfc~sGD~Tlea~~ 264 (360)
|+|++.+.+++..| ..|+.+ ++..+ .+ +.+ +....-|.+-+.=++.++.+.. ..=.|..|.|.-...+
T Consensus 307 gi~~~~i~~~L~~f~~~~gR~e~--v~~~~~~~~~--~~vi~DyaHnp~~~~a~l~al~~~~~~~~i~~v~g~~~~~r~~ 382 (475)
T 1p3d_A 307 GIANEAILEALADFQGAGRRFDQ--LGEFIRPNGK--VRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTR 382 (475)
T ss_dssp TCCHHHHHHHHHTCCCBTTSSEE--EEEEEETTEE--EEEEEECCCSHHHHHHHHHHHHHHHCSSCEEEEECCBCHHHHH
T ss_pred CCCHHHHHHHHHhCCCCCCCCEE--EecccccCCC--cEEEEeCCCCHHHHHHHHHHHHhhcCCCeEEEEECCCCCccHH
Confidence 67766665655554 577764 44321 22 333 3444457777777777776532 2236777876543333
Q ss_pred HHHHHHHhhcccCCCeEEEEEecCCccc----cCCChhHHHHHHhcCcccccEEEEEecCchHHHHHHHhhCCCCceEEe
Q psy11447 265 ASIQDLTTECAQHDDSILIVLSDANLDR----YGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAGRGFVC 340 (360)
Q Consensus 265 ~ai~~~a~~~~daDe~fVivlSDANL~R----YgI~p~~l~~~l~~~~p~V~a~~IfIgslgdqA~~l~~~Lp~Gr~fv~ 340 (360)
.-..++++....+| .||+ ++-|..| .|++++.|.+.+... ...+ +.++.++.+-.+.+.+.+.+|-..++
T Consensus 383 ~~~~~~~~~~~~~d--~vi~-t~~~~~~e~~~~g~~~~~l~~~~~~~-~~~~--~~~~~~~~~ai~~a~~~a~~gd~VLv 456 (475)
T 1p3d_A 383 DLFDDFVQVLSQVD--ALIM-LDVYAAGEAPIVGADSKSLCRSIRNL-GKVD--PILVSDTSQLGDVLDQIIQDGDLILA 456 (475)
T ss_dssp HTHHHHHHHHTTSS--EEEE-ECCBCTTCCCCTTCSHHHHHHHHHHH-TSCC--CEEESCGGGHHHHHHHHCCTTCEEEE
T ss_pred HHHHHHHHHHHhCC--EEEE-cCCcCCCCCCCCCCCHHHHHHHHHhh-CCCc--eEEECCHHHHHHHHHHhCCCCCEEEE
Confidence 32344443211455 3443 4556665 799999999988652 1112 34567877777777777777876666
Q ss_pred cCCCch
Q psy11447 341 MDLTEI 346 (360)
Q Consensus 341 ~dt~~l 346 (360)
+=...|
T Consensus 457 ~G~Gs~ 462 (475)
T 1p3d_A 457 QGAGSV 462 (475)
T ss_dssp ECSSTH
T ss_pred ECCCCH
Confidence 533443
No 60
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=40.70 E-value=95 Score=23.52 Aligned_cols=103 Identities=16% Similarity=0.218 Sum_probs=53.4
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.... |... +......|++.+... .+=+++.|-++. |++--++.+.|....|. .-+
T Consensus 10 ~~~~~~~l~~~l~~~-~~v~---~~~~~~~a~~~~~~~------~~dlvl~D~~lp--~~~g~~~~~~l~~~~~~--~~i 75 (139)
T 2jk1_A 10 EPHSLAAMKLALEDD-FDVL---TAQGAEAAIAILEEE------WVQVIICDQRMP--GRTGVDFLTEVRERWPE--TVR 75 (139)
T ss_dssp SHHHHHHHHHHHTTT-SCEE---EESSHHHHHHHHHHS------CEEEEEEESCCS--SSCHHHHHHHHHHHCTT--SEE
T ss_pred CHHHHHHHHHHhhcC-ceEE---EcCCHHHHHHHHhcC------CCCEEEEeCCCC--CCcHHHHHHHHHHhCCC--CcE
Confidence 344555556555432 3221 122233455555433 456888899986 55656666666654354 457
Q ss_pred EEecCchHHHHHHHhhCCC-C-ceEEecCC--CchHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPA-G-RGFVCMDL--TEIPQILQQI 353 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~-G-r~fv~~dt--~~lP~il~qI 353 (360)
|++.+..+.... .+.+-. | ..|+.... .+|-..++.+
T Consensus 76 i~~s~~~~~~~~-~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 116 (139)
T 2jk1_A 76 IIITGYTDSASM-MAAINDAGIHQFLTKPWHPEQLLSSARNA 116 (139)
T ss_dssp EEEESCTTCHHH-HHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred EEEeCCCChHHH-HHHHHhhchhhhccCCCCHHHHHHHHHHH
Confidence 777775553322 233322 3 56877643 3444444443
No 61
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=40.42 E-value=41 Score=25.58 Aligned_cols=109 Identities=10% Similarity=0.136 Sum_probs=60.1
Q ss_pred CchHHHHHHHHHHHh-hccccCCcchHHHHHHHHHHHHh-hcccCCCeEEEEEecCCcc-ccCCChhHHHHHHhcCcccc
Q psy11447 235 DNKQRLEVIKIMHAH-AQFCASGDYTLESIRASIQDLTT-ECAQHDDSILIVLSDANLD-RYGIAPREMGEALNAEAASV 311 (360)
Q Consensus 235 ~~keRl~vl~~M~aH-~Qfc~sGD~Tlea~~~ai~~~a~-~~~daDe~fVivlSDANL~-RYgI~p~~l~~~l~~~~p~V 311 (360)
++..-.+.++.+... ..|... +......|++.+.+ . .+=+||.|.++. . .+.-++.+.|..+...-
T Consensus 12 d~~~~~~~l~~~L~~~~~~~v~---~~~~~~~a~~~l~~~~------~~dlvi~D~~l~~~--~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 12 YFEYEREKTKIIFDNIGEYDFI---EVENLKKFYSIFKDLD------SITLIIMDIAFPVE--KEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp SCHHHHHHHHHHHHHHCCCEEE---EECSHHHHHTTTTTCC------CCSEEEECSCSSSH--HHHHHHHHHHHHSGGGT
T ss_pred CCHHHHHHHHHHHHhccCccEE---EECCHHHHHHHHhcCC------CCcEEEEeCCCCCC--CcHHHHHHHHHhCcccC
Confidence 345566667776665 444222 22234455655544 3 445888898885 3 33456666666621122
Q ss_pred cEEEEEecCchHHHHHHHhhCCCC-ceEEec--CCCchHHHHHHHHH
Q psy11447 312 RAYAIFIGSLGDQAKRLTQELPAG-RGFVCM--DLTEIPQILQQIFS 355 (360)
Q Consensus 312 ~a~~IfIgslgdqA~~l~~~Lp~G-r~fv~~--dt~~lP~il~qIf~ 355 (360)
+.-+|++.+..+... +.+.+.+| ..|+.. +..+|-..++.++.
T Consensus 81 ~~~ii~ls~~~~~~~-~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (140)
T 3lua_A 81 NTPVIIATKSDNPGY-RHAALKFKVSDYILKPYPTKRLENSVRSVLK 126 (140)
T ss_dssp TCCEEEEESCCCHHH-HHHHHHSCCSEEEESSCCTTHHHHHHHHHHC
T ss_pred CCCEEEEeCCCCHHH-HHHHHHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 445777777555433 33333344 567775 56667776666553
No 62
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=38.55 E-value=53 Score=25.45 Aligned_cols=105 Identities=11% Similarity=0.159 Sum_probs=57.4
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+... .|-.. +......|++.+.+. . .|-+||.|.++.. .+.-++.+.+....|. .-+
T Consensus 13 ~~~~~~~l~~~L~~-~~~v~---~~~~~~~a~~~l~~~--~---~~dlvi~D~~l~~--~~g~~~~~~l~~~~~~--~~i 79 (151)
T 3kcn_A 13 DYSLLNTLKRNLSF-DFEVT---TCESGPEALACIKKS--D---PFSVIMVDMRMPG--MEGTEVIQKARLISPN--SVY 79 (151)
T ss_dssp CHHHHHHHHHHHTT-TSEEE---EESSHHHHHHHHHHS--C---CCSEEEEESCCSS--SCHHHHHHHHHHHCSS--CEE
T ss_pred CHHHHHHHHHHhcc-CceEE---EeCCHHHHHHHHHcC--C---CCCEEEEeCCCCC--CcHHHHHHHHHhcCCC--cEE
Confidence 44555666666642 22111 222334555555543 2 2347888988864 6666777777765465 457
Q ss_pred EEecCchHHHHHHHhhCCCC--ceEEecC--CCchHHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAG--RGFVCMD--LTEIPQILQQIF 354 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G--r~fv~~d--t~~lP~il~qIf 354 (360)
|++.+-.+. +.+.+.+-+| ..|+... ..+|-..++.++
T Consensus 80 i~~s~~~~~-~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l 121 (151)
T 3kcn_A 80 LMLTGNQDL-TTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGI 121 (151)
T ss_dssp EEEECGGGH-HHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEEECCCCH-HHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHH
Confidence 888774544 4445555566 4677663 334444444443
No 63
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=38.51 E-value=97 Score=23.44 Aligned_cols=107 Identities=13% Similarity=0.163 Sum_probs=57.6
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|... +......|++.+... ...+-+||.|.++. +.+.-++.+.|....|. .-+
T Consensus 12 ~~~~~~~l~~~l~~~g~~v~---~~~~~~~a~~~~~~~----~~~~dlvi~d~~l~--~~~g~~~~~~l~~~~~~--~~i 80 (143)
T 3jte_A 12 ESTILQNIKFLLEIDGNEVL---TASSSTEGLRIFTEN----CNSIDVVITDMKMP--KLSGMDILREIKKITPH--MAV 80 (143)
T ss_dssp CHHHHHHHHHHHHHTTCEEE---EESSHHHHHHHHHHT----TTTCCEEEEESCCS--SSCHHHHHHHHHHHCTT--CEE
T ss_pred CHHHHHHHHHHHHhCCceEE---EeCCHHHHHHHHHhC----CCCCCEEEEeCCCC--CCcHHHHHHHHHHhCCC--CeE
Confidence 45556666666654433221 122233445555421 12344778898886 56777777777765454 457
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEecC--CCchHHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCMD--LTEIPQILQQIF 354 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~d--t~~lP~il~qIf 354 (360)
|++.+-.+. +.+.+.+-+| ..|+... ..+|-..++.++
T Consensus 81 i~ls~~~~~-~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 121 (143)
T 3jte_A 81 IILTGHGDL-DNAILAMKEGAFEYLRKPVTAQDLSIAINNAI 121 (143)
T ss_dssp EEEECTTCH-HHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEEECCCCH-HHHHHHHHhCcceeEeCCCCHHHHHHHHHHHH
Confidence 777775544 2333344445 4566653 344555555544
No 64
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=38.46 E-value=44 Score=26.82 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=37.5
Q ss_pred HHcCCCHHhHHHHHHhhHhhhhHHHHHhhhhhcccccCCCCchhHHHHHHhcCCCCChhHHHHHHHhhhhhh
Q psy11447 11 KEIQMSEYDAKVYSEYSLPVQNQQNDQHRDLFSVHVIDNPSPESELALLSSYGPDVPRDTLIRLVRAFGEFR 82 (360)
Q Consensus 11 kEi~Ms~~da~~Y~~~~~~vgndf~~~lgd~fs~h~v~np~~esE~~~L~~ygp~v~~~~l~~Lv~afgeLr 82 (360)
+++|+++-|-+.++.....+..+.++.| ..|.++.|.. .++..|++|.-+..
T Consensus 37 r~Lg~~~~~I~~ie~~~~~~~eq~~~mL-----------------~~W~~r~G~~---AT~~~L~~AL~~~~ 88 (110)
T 1wxp_A 37 PYLEMKDSEIRQIECDSEDMKMRAKQLL-----------------VAWQDQEGVH---ATPENLINALNKSG 88 (110)
T ss_dssp TTTTCCHHHHHHHHHHCSSHHHHHHHHH-----------------HHHHHHHGGG---CCHHHHHHHHHHTT
T ss_pred HHhCCCHHHHHHHHHcCCCHHHHHHHHH-----------------HHHHHhhCcC---cHHHHHHHHHHHcC
Confidence 4578999999998877777777888866 3677777654 56677777665443
No 65
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=38.18 E-value=26 Score=32.56 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=49.2
Q ss_pred CeEEEEEecCCccccCCCh-hHHHHHHhcCcccccEEEEEecCchHHHHHHHhhCCCCceEEec
Q psy11447 279 DSILIVLSDANLDRYGIAP-REMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAGRGFVCM 341 (360)
Q Consensus 279 e~fVivlSDANL~RYgI~p-~~l~~~l~~~~p~V~a~~IfIgslgdqA~~l~~~Lp~Gr~fv~~ 341 (360)
+.=|+.+.|.|-++|||+. ..+.++|... |+|.+.+|+-.. ..-++...+.|.+|+..+|-
T Consensus 50 ~~~lvav~d~~~~~~g~~~~~~~~~ll~~~-~~vD~V~i~tp~-~~H~~~~~~al~aGkhVl~E 111 (330)
T 4ew6_A 50 NFKLVATASRHGTVEGVNSYTTIEAMLDAE-PSIDAVSLCMPP-QYRYEAAYKALVAGKHVFLE 111 (330)
T ss_dssp TEEEEEEECSSCCCTTSEEESSHHHHHHHC-TTCCEEEECSCH-HHHHHHHHHHHHTTCEEEEC
T ss_pred CeEEEEEEeCChhhcCCCccCCHHHHHhCC-CCCCEEEEeCCc-HHHHHHHHHHHHcCCcEEEe
Confidence 3557788999999999974 4688888875 888887777665 77888899999999988874
No 66
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=37.70 E-value=50 Score=33.29 Aligned_cols=104 Identities=9% Similarity=0.009 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcC-cccccEEEE
Q psy11447 238 QRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAE-AASVRAYAI 316 (360)
Q Consensus 238 eRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~-~p~V~a~~I 316 (360)
.-+++++.+.. +. .-|-+.-.+++.+.+. ..--..|||+||--..--.++|.+..+..... .|.++.++|
T Consensus 425 ~l~~~l~~l~~--~~-~ggTdi~~~l~~a~~~------~~~~~~vIliTD~~~~~g~~~~~~al~~~r~~~~~~~klv~i 495 (535)
T 2nvo_A 425 TLESAMQKAQS--VS-FGGTDCAQPILWAAQE------RLDVDTFVVYTDNETWAGQVHPTVALDQYAQKMGRAPKLIVV 495 (535)
T ss_dssp CHHHHHHHTCC--SS-BCCCCTTHHHHHHHHT------TCCCSEEEEEESSCCCCCSSCHHHHHHHHHHHHSCCCEEEEE
T ss_pred hHHHHHHHHhh--CC-CCCccHHHHHHHHHHh------cCCCCEEEEEeCCCccCCCCCHHHHHHHHHHhhCCCCeEEEE
Confidence 34467777643 22 2232324444444332 23346899999975544457887766666642 377888888
Q ss_pred EecCchHHHHHHHhhCCCCceEEecCCCchHHHHHHH
Q psy11447 317 FIGSLGDQAKRLTQELPAGRGFVCMDLTEIPQILQQI 353 (360)
Q Consensus 317 fIgslgdqA~~l~~~Lp~Gr~fv~~dt~~lP~il~qI 353 (360)
-+|+-|.. +...-..|-..||-=.+.+|+.+.++
T Consensus 496 ~l~~~~~~---~~~~~~~~~~~i~g~se~~l~~Ia~~ 529 (535)
T 2nvo_A 496 GLTATEFS---IADPQRRDMLDVVGFDAAAPNVMTAF 529 (535)
T ss_dssp ETTCSCCC---CSCTTCSSEEEEEECCTTHHHHHHHH
T ss_pred eccCCCcc---cCCCCCCCceeeeCCCHHHHHHHHHH
Confidence 88885421 11111234466766667777777664
No 67
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=37.44 E-value=1.2e+02 Score=23.28 Aligned_cols=106 Identities=14% Similarity=0.132 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHHh-hccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEE
Q psy11447 236 NKQRLEVIKIMHAH-AQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAY 314 (360)
Q Consensus 236 ~keRl~vl~~M~aH-~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~ 314 (360)
+....+.++.+..- ..|...+ +......|++.+.+. . +=+||.|.++. +.+.-++.+.+....|.+ -
T Consensus 14 ~~~~~~~l~~~L~~~~~~~v~~--~~~~~~~a~~~l~~~--~----~dlii~D~~l~--~~~g~~~~~~l~~~~~~~--~ 81 (153)
T 3cz5_A 14 HPIVREGYRRLIERRPGYAVVA--EAADAGEAYRLYRET--T----PDIVVMDLTLP--GPGGIEATRHIRQWDGAA--R 81 (153)
T ss_dssp CHHHHHHHHHHHTTSTTEEEEE--EESSHHHHHHHHHTT--C----CSEEEECSCCS--SSCHHHHHHHHHHHCTTC--C
T ss_pred cHHHHHHHHHHHhhCCCcEEEE--EeCCHHHHHHHHhcC--C----CCEEEEecCCC--CCCHHHHHHHHHHhCCCC--e
Confidence 44555666666543 3332211 112233455555444 3 34777798886 566667777776654654 4
Q ss_pred EEEecCchHHHHHHHhhCCCC-ceEEec--CCCchHHHHHHHH
Q psy11447 315 AIFIGSLGDQAKRLTQELPAG-RGFVCM--DLTEIPQILQQIF 354 (360)
Q Consensus 315 ~IfIgslgdqA~~l~~~Lp~G-r~fv~~--dt~~lP~il~qIf 354 (360)
+|++++..+. +...+.+-+| ..|+.. +..+|-..++.++
T Consensus 82 ii~ls~~~~~-~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~ 123 (153)
T 3cz5_A 82 ILIFTMHQGS-AFALKAFEAGASGYVTKSSDPAELVQAIEAIL 123 (153)
T ss_dssp EEEEESCCSH-HHHHHHHHTTCSEEEETTSCTTHHHHHHHHHT
T ss_pred EEEEECCCCH-HHHHHHHHCCCcEEEecCCCHHHHHHHHHHHH
Confidence 6777765543 2333344444 346654 4556666666554
No 68
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=37.42 E-value=1.2e+02 Score=22.15 Aligned_cols=66 Identities=21% Similarity=0.321 Sum_probs=38.9
Q ss_pred EEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCchHHHHHHHhhCCCC-ceEEec--CCCchHHHHHHHH
Q psy11447 283 IVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAG-RGFVCM--DLTEIPQILQQIF 354 (360)
Q Consensus 283 ivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgdqA~~l~~~Lp~G-r~fv~~--dt~~lP~il~qIf 354 (360)
+++.|.++. +.+.-++.+.+... |. .-+|++.+.++.... .+.+.+| ..|+.. +..+|-+.++.+.
T Consensus 49 lvi~d~~l~--~~~g~~~~~~l~~~-~~--~~ii~~s~~~~~~~~-~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~ 117 (122)
T 1zgz_A 49 LILLDINLP--DENGLMLTRALRER-ST--VGIILVTGRSDRIDR-IVGLEMGADDYVTKPLELRELVVRVKNLL 117 (122)
T ss_dssp EEEEESCCS--SSCHHHHHHHHHTT-CC--CEEEEEESSCCHHHH-HHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEEEeCCCC--CCChHHHHHHHHhc-CC--CCEEEEECCCChhhH-HHHHHhCHHHHccCCCCHHHHHHHHHHHH
Confidence 667798886 45666777778764 65 457777775554332 3333333 567766 3345555555443
No 69
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=37.12 E-value=1.2e+02 Score=23.35 Aligned_cols=79 Identities=20% Similarity=0.285 Sum_probs=46.5
Q ss_pred HHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCchHHHHHHHhhCCCC-ceEEecC-
Q psy11447 265 ASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAG-RGFVCMD- 342 (360)
Q Consensus 265 ~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgdqA~~l~~~Lp~G-r~fv~~d- 342 (360)
.|++.+.+. .. =+||.|.++. +.+.-++.+.|....|.+ -+|++++-.+... +.+.+-+| ..|+...
T Consensus 52 ~a~~~l~~~--~~----dlii~d~~l~--~~~g~~~~~~l~~~~~~~--~ii~~s~~~~~~~-~~~~~~~g~~~~l~Kp~ 120 (152)
T 3eul_A 52 AALELIKAH--LP----DVALLDYRMP--GMDGAQVAAAVRSYELPT--RVLLISAHDEPAI-VYQALQQGAAGFLLKDS 120 (152)
T ss_dssp HHHHHHHHH--CC----SEEEEETTCS--SSCHHHHHHHHHHTTCSC--EEEEEESCCCHHH-HHHHHHTTCSEEEETTC
T ss_pred HHHHHHHhc--CC----CEEEEeCCCC--CCCHHHHHHHHHhcCCCC--eEEEEEccCCHHH-HHHHHHcCCCEEEecCC
Confidence 444445444 33 3788898885 567777777777765655 4777777555433 33333444 5677663
Q ss_pred -CCchHHHHHHHH
Q psy11447 343 -LTEIPQILQQIF 354 (360)
Q Consensus 343 -t~~lP~il~qIf 354 (360)
..+|-..++.++
T Consensus 121 ~~~~l~~~i~~~~ 133 (152)
T 3eul_A 121 TRTEIVKAVLDCA 133 (152)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 345555555544
No 70
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=37.05 E-value=30 Score=25.81 Aligned_cols=79 Identities=15% Similarity=0.115 Sum_probs=47.0
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|... +......|++.+.+. . +=+||.|.++. +.+.-++.+.+....+.-+.-+
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~---~~~~~~~a~~~l~~~--~----~dlii~D~~l~--~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 12 YQAAAETFKELLEMLGFQAD---YVMSGTDALHAMSTR--G----YDAVFIDLNLP--DTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CHHHHHHHHHHHHHTTEEEE---EESSHHHHHHHHHHS--C----CSEEEEESBCS--SSBHHHHHHHHHHSCCSSCCEE
T ss_pred CHHHHHHHHHHHHHcCCCEE---EECCHHHHHHHHHhc--C----CCEEEEeCCCC--CCCHHHHHHHHHhhhccCCCCE
Confidence 45566666666655433211 112234555555544 3 44888899987 5677788888877623456678
Q ss_pred EEecCchHHH
Q psy11447 316 IFIGSLGDQA 325 (360)
Q Consensus 316 IfIgslgdqA 325 (360)
|++.+-.+..
T Consensus 81 i~~s~~~~~~ 90 (127)
T 3i42_A 81 VAVSGFAKND 90 (127)
T ss_dssp EEEECC-CTT
T ss_pred EEEECCcchh
Confidence 8887766554
No 71
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=36.81 E-value=1.2e+02 Score=22.04 Aligned_cols=91 Identities=16% Similarity=0.212 Sum_probs=48.7
Q ss_pred chHHHHHHHHHHHhhccc--cCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccE
Q psy11447 236 NKQRLEVIKIMHAHAQFC--ASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRA 313 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc--~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a 313 (360)
+....+.++.+.....|. ..-.+ ...|++.+.+. ..| +++.|.++. +++--++.+.|.+..|. .
T Consensus 11 ~~~~~~~l~~~l~~~g~~vv~~~~~----~~~a~~~~~~~--~~d----lil~D~~l~--~~~g~~~~~~l~~~~~~--~ 76 (120)
T 1tmy_A 11 AAFMRMMLKDIITKAGYEVAGEATN----GREAVEKYKEL--KPD----IVTMDITMP--EMNGIDAIKEIMKIDPN--A 76 (120)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEESS----HHHHHHHHHHH--CCS----EEEEECSCG--GGCHHHHHHHHHHHCTT--C
T ss_pred cHHHHHHHHHHHhhcCcEEEEEECC----HHHHHHHHHhc--CCC----EEEEeCCCC--CCcHHHHHHHHHhhCCC--C
Confidence 445556666666544442 11222 23444444443 333 778899886 34555666666654364 4
Q ss_pred EEEEecCchHHHHHHHhhCCCC-ceEEec
Q psy11447 314 YAIFIGSLGDQAKRLTQELPAG-RGFVCM 341 (360)
Q Consensus 314 ~~IfIgslgdqA~~l~~~Lp~G-r~fv~~ 341 (360)
-+|++++.++.. ...+.+.+| ..|+..
T Consensus 77 ~ii~~s~~~~~~-~~~~~~~~g~~~~l~K 104 (120)
T 1tmy_A 77 KIIVCSAMGQQA-MVIEAIKAGAKDFIVK 104 (120)
T ss_dssp CEEEEECTTCHH-HHHHHHHTTCCEEEES
T ss_pred eEEEEeCCCCHH-HHHHHHHhCcceeEeC
Confidence 578888766543 333444445 456665
No 72
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=36.68 E-value=25 Score=31.50 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=25.7
Q ss_pred cchHHHHHHHHHHHHhhcccCC-----CeEEEEEecCCccc
Q psy11447 257 DYTLESIRASIQDLTTECAQHD-----DSILIVLSDANLDR 292 (360)
Q Consensus 257 D~Tlea~~~ai~~~a~~~~daD-----e~fVivlSDANL~R 292 (360)
-||++|.+.|++.=+. -.|.| |..+||.-|.+|+|
T Consensus 23 ENTl~Af~~A~~~Gad-~iE~DV~lTkDg~lVv~HD~~l~r 62 (272)
T 3ch0_A 23 ENTIAAFTKALLLGVT-TLEFDLVISKDNRVVVSHDTFFHH 62 (272)
T ss_dssp TTSHHHHHHHHHHTCS-EEEEEEEECTTCCEEECSSSBCCT
T ss_pred cccHHHHHHHHHcCCC-EEEEeeeEcCCCcEEEeCCCcccc
Confidence 5899999999986332 01222 46788999999998
No 73
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=36.33 E-value=56 Score=24.43 Aligned_cols=70 Identities=21% Similarity=0.245 Sum_probs=41.3
Q ss_pred EEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCchHHHHHHHhhCCCC-ceEEec--CCCchHHHHHHHHH
Q psy11447 281 ILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAG-RGFVCM--DLTEIPQILQQIFS 355 (360)
Q Consensus 281 fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgdqA~~l~~~Lp~G-r~fv~~--dt~~lP~il~qIf~ 355 (360)
+-+|+.|.++. +.+.-++.+.+....|.+ -+|++++-.+.. ...+.+-+| ..|+.. +..+|-+.++.++.
T Consensus 47 ~dlii~d~~l~--~~~g~~~~~~l~~~~~~~--~ii~~s~~~~~~-~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 119 (134)
T 3f6c_A 47 PDIVIIDVDIP--GVNGIQVLETLRKRQYSG--IIIIVSAKNDHF-YGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 119 (134)
T ss_dssp CSEEEEETTCS--SSCHHHHHHHHHHTTCCS--EEEEEECC---C-THHHHHHTTCSEEEEGGGCTHHHHHHHHHHHT
T ss_pred CCEEEEecCCC--CCChHHHHHHHHhcCCCC--eEEEEeCCCChH-HHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 34788898885 466777777777765654 478887755532 223333334 567766 44566666666553
No 74
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=35.86 E-value=53 Score=24.99 Aligned_cols=108 Identities=14% Similarity=0.138 Sum_probs=58.2
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+..-.+.++.+.....|-.. +......|++.+.+. .+=+||.|.++..-..+.-++.+.|....|.+ -+
T Consensus 15 ~~~~~~~l~~~L~~~g~~v~---~~~~~~~a~~~l~~~------~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~--~i 83 (136)
T 3kto_A 15 QKDARAALSKLLSPLDVTIQ---CFASAESFMRQQISD------DAIGMIIEAHLEDKKDSGIELLETLVKRGFHL--PT 83 (136)
T ss_dssp CHHHHHHHHHHHTTSSSEEE---EESSHHHHTTSCCCT------TEEEEEEETTGGGBTTHHHHHHHHHHHTTCCC--CE
T ss_pred CHHHHHHHHHHHHHCCcEEE---EeCCHHHHHHHHhcc------CCCEEEEeCcCCCCCccHHHHHHHHHhCCCCC--CE
Confidence 45556666666654433211 122233444444332 46788899998642155567777777764554 47
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEec--CCCchHHHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCM--DLTEIPQILQQIFS 355 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~--dt~~lP~il~qIf~ 355 (360)
|++.+..+.... .+.+-+| ..|+.. +..+|-..++.++.
T Consensus 84 i~~s~~~~~~~~-~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 125 (136)
T 3kto_A 84 IVMASSSDIPTA-VRAMRASAADFIEKPFIEHVLVHDVQQIIN 125 (136)
T ss_dssp EEEESSCCHHHH-HHHHHTTCSEEEESSBCHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHH-HHHHHcChHHheeCCCCHHHHHHHHHHHHh
Confidence 777775654333 3333334 456665 33455555555443
No 75
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=35.63 E-value=1.1e+02 Score=22.76 Aligned_cols=106 Identities=18% Similarity=0.140 Sum_probs=54.5
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCcccc---CCChhHHHHHHhcCccccc
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRY---GIAPREMGEALNAEAASVR 312 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RY---gI~p~~l~~~l~~~~p~V~ 312 (360)
+....+.++.+..-..|... +......|++.+.+. .+=+||.|.++... +.+.-++.+.|....|.
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~---~~~~~~~a~~~l~~~------~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~-- 80 (140)
T 2qr3_A 12 NKGVLTAVQLLLKNHFSKVI---TLSSPVSLSTVLREE------NPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRD-- 80 (140)
T ss_dssp CHHHHHHHHHHHTTTSSEEE---EECCHHHHHHHHHHS------CEEEEEEETTTTC-----CCHHHHHHHHHHHCTT--
T ss_pred CHHHHHHHHHHHHhCCcEEE---EeCCHHHHHHHHHcC------CCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcC--
Confidence 44555666666543333221 122234455555443 35678889888622 55666666666654354
Q ss_pred EEEEEecCchHHHHHHHhhCCCC-ceEEec--CCCchHHHHHHH
Q psy11447 313 AYAIFIGSLGDQAKRLTQELPAG-RGFVCM--DLTEIPQILQQI 353 (360)
Q Consensus 313 a~~IfIgslgdqA~~l~~~Lp~G-r~fv~~--dt~~lP~il~qI 353 (360)
.-+|++++..+ .+.+.+.+.+| ..|+.. +..+|-..++.+
T Consensus 81 ~~ii~ls~~~~-~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~ 123 (140)
T 2qr3_A 81 LPVVLFTAYAD-IDLAVRGIKEGASDFVVKPWDNQKLLETLLNA 123 (140)
T ss_dssp CCEEEEEEGGG-HHHHHHHHHTTCCEEEEESCCHHHHHHHHHHH
T ss_pred CCEEEEECCCC-HHHHHHHHHcCchheeeCCCCHHHHHHHHHHH
Confidence 45777776554 33444444455 355554 233444444444
No 76
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=35.06 E-value=1.9e+02 Score=24.73 Aligned_cols=9 Identities=22% Similarity=0.652 Sum_probs=4.7
Q ss_pred cccccCCCC
Q psy11447 224 IPFVTSNNL 232 (360)
Q Consensus 224 i~lV~~~~~ 232 (360)
||+|..+.+
T Consensus 95 iPvV~~~~~ 103 (304)
T 3gbv_A 95 IPYIYIDSQ 103 (304)
T ss_dssp CCEEEESSC
T ss_pred CeEEEEeCC
Confidence 555555544
No 77
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=34.71 E-value=4.4 Score=34.48 Aligned_cols=55 Identities=20% Similarity=0.396 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCchHHHHHHHhhC
Q psy11447 258 YTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQEL 332 (360)
Q Consensus 258 ~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgdqA~~l~~~L 332 (360)
++++.++.-+++|.+. +-| +=+|-.||||++.++.+ .+. ||.+++.|-..+++.|
T Consensus 74 ~~l~sie~dLeDLe~s-------I~i--vE~np~kF~l~~~Ei~~--Rr~---------fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 74 NGLRSIEWDLEDLEET-------IGI--VEANPGKFKLPAGDLQE--RKV---------FVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHH-------HHH--HHHCHHHHCCCHHHHHH--HHH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHH--HHhCHHhcCCCHHHHHH--HHH---------HHHHHHHHHHHHHHHh
Confidence 3566777777777542 222 34788999999999876 333 6777788888877765
No 78
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=33.11 E-value=1.2e+02 Score=22.89 Aligned_cols=103 Identities=13% Similarity=0.142 Sum_probs=54.3
Q ss_pred chHHHHHHHHHHHhh-cccc--CCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCccccc
Q psy11447 236 NKQRLEVIKIMHAHA-QFCA--SGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVR 312 (360)
Q Consensus 236 ~keRl~vl~~M~aH~-Qfc~--sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~ 312 (360)
+....+.++.+.... .|.. +..+ ...|++.+.+. . +=+||.|.++. +.+--++.+.+....| .
T Consensus 18 ~~~~~~~l~~~L~~~~~~~~v~~~~~----~~~al~~l~~~--~----~dlvi~d~~l~--~~~g~~~~~~l~~~~~--~ 83 (143)
T 2qv0_A 18 EFLAQQELSWLINTHSQMEIVGSFDD----GLDVLKFLQHN--K----VDAIFLDINIP--SLDGVLLAQNISQFAH--K 83 (143)
T ss_dssp CHHHHHHHHHHHHHHSCCEEEEEESC----HHHHHHHHHHC--C----CSEEEECSSCS--SSCHHHHHHHHTTSTT--C
T ss_pred CHHHHHHHHHHHHhCCCceEEEEeCC----HHHHHHHHHhC--C----CCEEEEecCCC--CCCHHHHHHHHHccCC--C
Confidence 344555555555432 4432 2222 23344444443 3 34788899886 4666778888877523 3
Q ss_pred EEEEEecCchHHHHHHHhhCCCC-ceEEecC--CCchHHHHHHHHH
Q psy11447 313 AYAIFIGSLGDQAKRLTQELPAG-RGFVCMD--LTEIPQILQQIFS 355 (360)
Q Consensus 313 a~~IfIgslgdqA~~l~~~Lp~G-r~fv~~d--t~~lP~il~qIf~ 355 (360)
..+|++++..+.+.+. +.+| ..|+... ..+|-+.++.++.
T Consensus 84 ~~ii~~s~~~~~~~~~---~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 84 PFIVFITAWKEHAVEA---FELEAFDYILKPYQESRIINMLQKLTT 126 (143)
T ss_dssp CEEEEEESCCTTHHHH---HHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHH---HhCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 4467776655443333 2233 5677663 3355555555543
No 79
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=33.11 E-value=1e+02 Score=25.94 Aligned_cols=86 Identities=14% Similarity=0.269 Sum_probs=57.3
Q ss_pred cccccCCc---hhh--------HHHHhhccccceeEeeee----ccCCCCccccccCCCCCCCchHHHHHHHHHHHhhcc
Q psy11447 188 NLRNTGSD---LGT--------SLEAFQDFDQRISLDIIG----HSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQF 252 (360)
Q Consensus 188 ~lrfn~~D---L~r--------vMEaf~g~e~k~~ydivG----HSGd~~~i~lV~~~~~Pk~~keRl~vl~~M~aH~Qf 252 (360)
+|||.|.+ +.. +.+.++.-.+-|..+.+= |.| ..-|+|+..-.+++..++-++++.+
T Consensus 18 hlr~rgi~~e~v~~lS~~Lid~La~i~~~~~e~fTle~i~s~~i~~G--~~MP~VeV~~fgRt~EqK~~la~~I------ 89 (122)
T 1u9d_A 18 HLRFRAVEAHIVESLVPTLLNELSSLLSTARNAFTFELINTQYFAEG--GVYPMVEVLWFGREQQTQDQIAQVI------ 89 (122)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCCCCCCTT--CCCCEEEEEESCCCHHHHHHHHHHH------
T ss_pred eEEECCCCHHHHHHHhHHHHHHHHHHHCCCcccEEEEEeeeEEEecC--CCCCEEEEEEcCCCHHHHHHHHHHH------
Confidence 57888888 322 555555556666665442 455 5578888766677777776766544
Q ss_pred ccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCC
Q psy11447 253 CASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIA 296 (360)
Q Consensus 253 c~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~ 296 (360)
..|+.++.. -.+++.|++.|-+-+.|++.
T Consensus 90 -----------T~av~~~~~----~~e~V~Vif~el~~~~y~~g 118 (122)
T 1u9d_A 90 -----------TDQIRQLLG----ADSHLAVVFIPLQRTAYYLD 118 (122)
T ss_dssp -----------HHHHHHHHC----TTCCCEEEEEECCGGGCEET
T ss_pred -----------HHHHHHhCC----CCceEEEEEEecCHHHeeeC
Confidence 366666531 23799999999999999864
No 80
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=32.38 E-value=1.4e+02 Score=22.00 Aligned_cols=106 Identities=15% Similarity=0.225 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHHhhcc--ccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccE
Q psy11447 236 NKQRLEVIKIMHAHAQF--CASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRA 313 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qf--c~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a 313 (360)
+....+.++.+.....| +..-.+ ...|++.+... . +=+++.|.++. +.+--++.+.|....+.-+.
T Consensus 13 ~~~~~~~l~~~l~~~~~~~v~~~~~----~~~a~~~~~~~--~----~dlvi~D~~l~--~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 13 FSTMRRIVRNLLKELGFNNVEEAED----GVDALNKLQAG--G----YGFVISDWNMP--NMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEESS----HHHHHHHHTTC--C----CCEEEEESCCS--SSCHHHHHHHHHC--CCTTC
T ss_pred CHHHHHHHHHHHHHcCCcEEEeeCC----HHHHHHHHHhc--C----CCEEEEeCCCC--CCCHHHHHHHHHhhcccCCC
Confidence 44555666666655444 222222 23444555433 3 33667799886 45667788888764122345
Q ss_pred EEEEecCchHHHHHHHhhCCCC-ceEEecC--CCchHHHHHHHH
Q psy11447 314 YAIFIGSLGDQAKRLTQELPAG-RGFVCMD--LTEIPQILQQIF 354 (360)
Q Consensus 314 ~~IfIgslgdqA~~l~~~Lp~G-r~fv~~d--t~~lP~il~qIf 354 (360)
-+|++++..+. +.+.+.+.+| ..|+... ..+|-+.++.++
T Consensus 81 ~ii~~s~~~~~-~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~ 123 (128)
T 1jbe_A 81 PVLMVTAEAKK-ENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 123 (128)
T ss_dssp CEEEEESSCCH-HHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cEEEEecCccH-HHHHHHHHhCcCceeecCCCHHHHHHHHHHHH
Confidence 67888775543 3334444445 4566653 334555555544
No 81
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=32.02 E-value=25 Score=32.61 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=25.7
Q ss_pred cchHHHHHHHHHHHHhhcccCC-----CeEEEEEecCCcccc
Q psy11447 257 DYTLESIRASIQDLTTECAQHD-----DSILIVLSDANLDRY 293 (360)
Q Consensus 257 D~Tlea~~~ai~~~a~~~~daD-----e~fVivlSDANL~RY 293 (360)
-||++|.+.|++.=+. ..|.| |..+||+-|.+|+|-
T Consensus 32 ENTl~Af~~A~~~G~d-~iE~DV~lTkDg~~Vv~HD~~l~rt 72 (313)
T 3l12_A 32 ENTLEGFAFTLAAGVR-ALEFDVVMTADGVPVVTHNHHLANA 72 (313)
T ss_dssp TTCHHHHHHHHHTTCC-EEEEEEEECTTSCEEECSSSBCCTT
T ss_pred ccHHHHHHHHHHcCCC-EEEEEEEECCCCCEEEECCchhccc
Confidence 5899999999974221 11222 366889999999994
No 82
>2gj2_A WSV230, VP9; ferredoxin fold, metal binding protein; 2.35A {Shrimp white spot syndrome virus} PDB: 2gji_A 2zug_A
Probab=32.01 E-value=2.2 Score=34.34 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=22.1
Q ss_pred hccccCCcch-----HHHHHHHHHHHHhhcccCCC-eEEEEEecC
Q psy11447 250 AQFCASGDYT-----LESIRASIQDLTTECAQHDD-SILIVLSDA 288 (360)
Q Consensus 250 ~Qfc~sGD~T-----lea~~~ai~~~a~~~~daDe-~fVivlSDA 288 (360)
+-||+|||+| +=.+=.||+.+.+. |-+| .|++-|-|-
T Consensus 11 ~~F~l~Gek~~kYE~Vm~tF~~vesvRkS--El~d~~~iV~LK~~ 53 (85)
T 2gj2_A 11 ADFLLVGDDTSRYEEVMKTFDTVEAVRKS--DLDDRVYMVCLKQG 53 (85)
T ss_dssp SCEEEECSCCSSHHHHHTTSTTEEEEEEC--SSCTTEEEEEECTT
T ss_pred cceEEEcCCchHHHHHHHHHHHHHHHHHh--hcccceEEEEEccC
Confidence 5699999998 22333455566665 5544 455555543
No 83
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=31.97 E-value=84 Score=23.16 Aligned_cols=92 Identities=12% Similarity=0.151 Sum_probs=49.9
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|-.. +......|++.+.+. ..| ++|.|-++. |.+--++.+.|....|. .-+
T Consensus 12 ~~~~~~~l~~~l~~~~~~v~---~~~~~~~a~~~~~~~--~~d----lvl~D~~l~--~~~g~~~~~~l~~~~~~--~~i 78 (124)
T 1srr_A 12 QSGIRILLNEVFNKEGYQTF---QAANGLQALDIVTKE--RPD----LVLLDMKIP--GMDGIEILKRMKVIDEN--IRV 78 (124)
T ss_dssp CHHHHHHHHHHHHTTTCEEE---EESSHHHHHHHHHHH--CCS----EEEEESCCT--TCCHHHHHHHHHHHCTT--CEE
T ss_pred CHHHHHHHHHHHHHCCcEEE---EeCCHHHHHHHHhcc--CCC----EEEEecCCC--CCCHHHHHHHHHHhCCC--CCE
Confidence 45566667766654333211 122234455555444 333 788899886 45566777777654354 467
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEec
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCM 341 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~ 341 (360)
|++++.++.. ...+.+.+| ..|+..
T Consensus 79 i~~s~~~~~~-~~~~~~~~g~~~~l~K 104 (124)
T 1srr_A 79 IIMTAYGELD-MIQESKELGALTHFAK 104 (124)
T ss_dssp EEEESSCCHH-HHHHHHHHTCCCEEES
T ss_pred EEEEccCchH-HHHHHHhcChHhhccC
Confidence 7887755533 233333334 566665
No 84
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=31.89 E-value=1.1e+02 Score=24.95 Aligned_cols=105 Identities=14% Similarity=0.232 Sum_probs=63.7
Q ss_pred chHHHHHHHHHHHhhccc--cCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccE
Q psy11447 236 NKQRLEVIKIMHAHAQFC--ASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRA 313 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc--~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a 313 (360)
+..=.++++.+....-|. ..-++- ..|++.+.+. . |=+||+|-|+- |++=-++.+.+.++...-+.
T Consensus 21 ~~~~r~~l~~~L~~~G~~~v~~a~~g----~~al~~~~~~--~----~DlillD~~MP--~mdG~el~~~ir~~~~~~~i 88 (134)
T 3to5_A 21 FSTMRRIVKNLLRDLGFNNTQEADDG----LTALPMLKKG--D----FDFVVTDWNMP--GMQGIDLLKNIRADEELKHL 88 (134)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEESSH----HHHHHHHHHH--C----CSEEEEESCCS--SSCHHHHHHHHHHSTTTTTC
T ss_pred CHHHHHHHHHHHHHcCCcEEEEECCH----HHHHHHHHhC--C----CCEEEEcCCCC--CCCHHHHHHHHHhCCCCCCC
Confidence 455567888887766553 222333 3445555544 3 44899999996 67888999999876223345
Q ss_pred EEEEecCchHHHHHHHhhCCCC-ceEEec--CCCchHHHHHHH
Q psy11447 314 YAIFIGSLGDQAKRLTQELPAG-RGFVCM--DLTEIPQILQQI 353 (360)
Q Consensus 314 ~~IfIgslgdqA~~l~~~Lp~G-r~fv~~--dt~~lP~il~qI 353 (360)
-+|++.+.++..... +.+-+| ..|+.. +.++|=..++++
T Consensus 89 pvI~lTa~~~~~~~~-~~~~~Ga~~yl~KP~~~~~L~~~i~~~ 130 (134)
T 3to5_A 89 PVLMITAEAKREQII-EAAQAGVNGYIVKPFTAATLKEKLDKI 130 (134)
T ss_dssp CEEEEESSCCHHHHH-HHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred eEEEEECCCCHHHHH-HHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 689998877665543 333344 467776 333344444433
No 85
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}
Probab=31.79 E-value=29 Score=28.72 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCchHHHHHHHhhCCCCceEEe
Q psy11447 261 ESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAGRGFVC 340 (360)
Q Consensus 261 ea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgdqA~~l~~~Lp~Gr~fv~ 340 (360)
++.+.+++.+.- +.++ ++++-|. +..+..+-.. ...+|.++.-......+.+. +-.+|+
T Consensus 169 ~~~~~~~~~lg~---~~~~--~i~vGD~--------~~Di~~a~~a-----G~~~i~v~~~~~~~~~l~~~---~ad~v~ 227 (247)
T 3dv9_A 169 EPYLMALKKGGF---KPNE--ALVIENA--------PLGVQAGVAA-----GIFTIAVNTGPLHDNVLLNE---GANLLF 227 (247)
T ss_dssp HHHHHHHHHHTC---CGGG--EEEEECS--------HHHHHHHHHT-----TSEEEEECCSSSCHHHHHTT---TCSEEE
T ss_pred HHHHHHHHHcCC---Chhh--eEEEeCC--------HHHHHHHHHC-----CCeEEEEcCCCCCHHHHHhc---CCCEEE
Confidence 345566666531 2223 5666774 3344444333 33456666644444555543 447999
Q ss_pred cCCCchHHHHHHHHHh
Q psy11447 341 MDLTEIPQILQQIFSA 356 (360)
Q Consensus 341 ~dt~~lP~il~qIf~s 356 (360)
-+..+|+.+|++++.+
T Consensus 228 ~~~~el~~~l~~~~~~ 243 (247)
T 3dv9_A 228 HSMPDFNKNWETLQSA 243 (247)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999999764
No 86
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=31.08 E-value=3.1e+02 Score=28.93 Aligned_cols=91 Identities=16% Similarity=0.271 Sum_probs=61.6
Q ss_pred hHHHHHHHH---HHHH-hhcccCCCeEEEEEecCCccc------cCC-------------------------ChhHHHHH
Q psy11447 259 TLESIRASI---QDLT-TECAQHDDSILIVLSDANLDR------YGI-------------------------APREMGEA 303 (360)
Q Consensus 259 Tlea~~~ai---~~~a-~~~~daDe~fVivlSDANL~R------YgI-------------------------~p~~l~~~ 303 (360)
.++|+-+|+ +++. +. +| -+++|+++||.+-= -|| +..+|.+.
T Consensus 222 g~dAl~qa~~c~~~igWr~--~a-~rllv~~TDa~~H~agDg~l~gi~~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~ 298 (690)
T 3fcs_B 222 GFDAIMQATVCDEKIGWRN--DA-SHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEK 298 (690)
T ss_dssp HHHHHHHHHHCHHHHTCCS--SS-EEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHH
T ss_pred HHHHHHHHhhcccccCCCC--Cc-eEEEEEECCCccccCCCccccceecCCCcceeecCCCccccccccCCCCHHHHHHH
Confidence 588888887 6664 22 22 48999999999751 122 36788999
Q ss_pred HhcCcccccEEEEEecCchHHH--HHHHhhCCCCce-EEecCCCchHHHHHHHHHh
Q psy11447 304 LNAEAASVRAYAIFIGSLGDQA--KRLTQELPAGRG-FVCMDLTEIPQILQQIFSA 356 (360)
Q Consensus 304 l~~~~p~V~a~~IfIgslgdqA--~~l~~~Lp~Gr~-fv~~dt~~lP~il~qIf~s 356 (360)
|..+ |.-+||...-+... +.|.+.+|.+-. -.-.|.++|-+.++.-+.+
T Consensus 299 l~~~----~i~~ifavt~~~~~~y~~l~~~i~~s~v~~l~~dSsni~~li~~~y~~ 350 (690)
T 3fcs_B 299 LSQK----NINLIFAVTENVVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVDAYGK 350 (690)
T ss_dssp HHHT----TCEEEEEEEGGGHHHHHHHHHHSTTCEEEEECTTCTTHHHHHHHHHHH
T ss_pred HHHc----CCeEEEEEeCCchhhHHHHHhhcCCceeeeeccccHHHHHHHHHHHHh
Confidence 9887 77888887644333 578899984321 2236778888888776643
No 87
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=30.95 E-value=1.7e+02 Score=21.92 Aligned_cols=73 Identities=12% Similarity=0.264 Sum_probs=43.7
Q ss_pred eEEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCchHHHHHHHhhCCCC-ceEEec--CCCchHHHHHHHHH
Q psy11447 280 SILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAG-RGFVCM--DLTEIPQILQQIFS 355 (360)
Q Consensus 280 ~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgdqA~~l~~~Lp~G-r~fv~~--dt~~lP~il~qIf~ 355 (360)
.+=+|+.|.++. +.+.-++.+.|......-+.-+|++.+..+. +.+.+.+-+| ..|+.. +..+|-..++.++.
T Consensus 62 ~~dlvi~D~~l~--~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~-~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 62 RPAVILLDLNLP--GTDGREVLQEIKQDEVLKKIPVVIMTTSSNP-KDIEICYSYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp CCSEEEECSCCS--SSCHHHHHHHHTTSTTGGGSCEEEEESCCCH-HHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCC--CCCHHHHHHHHHhCcccCCCeEEEEeCCCCH-HHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 456888899886 4677788888877631134556777665543 3333333344 567665 44456666665543
No 88
>1bm4_A Protein (moloney murine leukemia virus capsid); moloney murine leukemia virus capsid protein, momlv, MU-MLV, MHR, major homology region; NMR {Synthetic} SCOP: j.47.1.1
Probab=30.85 E-value=17 Score=24.58 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=9.6
Q ss_pred hhhHHHHhhccc
Q psy11447 196 LGTSLEAFQDFD 207 (360)
Q Consensus 196 L~rvMEaf~g~e 207 (360)
|+|+||||..|.
T Consensus 19 lerL~eayR~yT 30 (32)
T 1bm4_A 19 LERLKEAYRRYT 30 (32)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHhcC
Confidence 778899998764
No 89
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=30.72 E-value=1.1e+02 Score=22.05 Aligned_cols=90 Identities=13% Similarity=0.168 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|-.. +......|++.+... . +=+++.|.++. +.+--++.+.+....|. .-+
T Consensus 10 ~~~~~~~l~~~l~~~~~~v~---~~~~~~~a~~~~~~~--~----~dlvl~D~~l~--~~~g~~~~~~l~~~~~~--~~i 76 (116)
T 3a10_A 10 EPNIRELLKEELQEEGYEID---TAENGEEALKKFFSG--N----YDLVILDIEMP--GISGLEVAGEIRKKKKD--AKI 76 (116)
T ss_dssp CHHHHHHHHHHHHHTTCEEE---EESSHHHHHHHHHHS--C----CSEEEECSCCS--SSCHHHHHHHHHHHCTT--CCE
T ss_pred CHHHHHHHHHHHHHCCCEEE---EeCCHHHHHHHHhcC--C----CCEEEEECCCC--CCCHHHHHHHHHccCCC--CeE
Confidence 44445555555544333211 122234455555443 3 33788899986 35556677777654354 457
Q ss_pred EEecCchHHHHHHHhhCCC-CceEEec
Q psy11447 316 IFIGSLGDQAKRLTQELPA-GRGFVCM 341 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~-Gr~fv~~ 341 (360)
|++++.++.. .+.+.. ...|+..
T Consensus 77 i~~s~~~~~~---~~~~~~g~~~~l~K 100 (116)
T 3a10_A 77 ILLTAYSHYR---SDMSSWAADEYVVK 100 (116)
T ss_dssp EEEESCGGGG---GCGGGGGSSEEEEC
T ss_pred EEEECCcchH---HHHHhccccceEEC
Confidence 7777766544 222222 3467765
No 90
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3
Probab=30.48 E-value=21 Score=31.73 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=25.0
Q ss_pred cchHHHHHHHHHHHHhhcccCC-----CeEEEEEecCCcccc
Q psy11447 257 DYTLESIRASIQDLTTECAQHD-----DSILIVLSDANLDRY 293 (360)
Q Consensus 257 D~Tlea~~~ai~~~a~~~~daD-----e~fVivlSDANL~RY 293 (360)
-||++|.+.|++.=+. -.|.| |..+||+-|.+|+|-
T Consensus 27 ENTl~Af~~A~~~Gad-~iE~DV~lTkDG~lVv~HD~~l~Rt 67 (234)
T 1o1z_A 27 ENTLEAFMKAIEAGAN-GVELDVRLSKDGKVVVSHDEDLKRL 67 (234)
T ss_dssp TTSHHHHHHHHHTTCS-EEEEEEEECTTSCEEECSSSEEHHH
T ss_pred CchHHHHHHHHHcCCC-EEEEEeeEecCCCEEEEcCCcHHhc
Confidence 4799999999985331 11222 356888999999873
No 91
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=30.09 E-value=1.7e+02 Score=21.87 Aligned_cols=66 Identities=11% Similarity=0.283 Sum_probs=38.6
Q ss_pred EEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCchHHHHHHHhhCCCC-ceEEecC--CCchHHHHHHH
Q psy11447 283 IVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAG-RGFVCMD--LTEIPQILQQI 353 (360)
Q Consensus 283 ivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgdqA~~l~~~Lp~G-r~fv~~d--t~~lP~il~qI 353 (360)
+||.|.++. +++--++.+.|....| +.-+|++++..+... +.+.+.+| ..|+... ..+|-..++.+
T Consensus 52 lvilD~~lp--~~~g~~~~~~l~~~~~--~~~ii~ls~~~~~~~-~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~ 120 (133)
T 3b2n_A 52 VVILDIEMP--GMTGLEVLAEIRKKHL--NIKVIIVTTFKRPGY-FEKAVVNDVDAYVLKERSIEELVETINKV 120 (133)
T ss_dssp EEEECSSCS--SSCHHHHHHHHHHTTC--SCEEEEEESCCCHHH-HHHHHHTTCSEEEETTSCHHHHHHHHHHH
T ss_pred EEEEecCCC--CCCHHHHHHHHHHHCC--CCcEEEEecCCCHHH-HHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 777899986 4555677777765435 456888887665433 33333334 5677663 33444444443
No 92
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=30.04 E-value=1.7e+02 Score=21.79 Aligned_cols=105 Identities=12% Similarity=0.169 Sum_probs=58.3
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+....-|... +......|++.+.+. ..| +||.|.++. +.+.-++.+.|.+..|. .-+
T Consensus 16 ~~~~~~~l~~~L~~~~~~v~---~~~~~~~a~~~l~~~--~~d----lvi~d~~l~--~~~g~~~~~~l~~~~~~--~~i 82 (137)
T 3hdg_A 16 DTDAREWLSTIISNHFPEVW---SAGDGEEGERLFGLH--APD----VIITDIRMP--KLGGLEMLDRIKAGGAK--PYV 82 (137)
T ss_dssp CHHHHHHHHHHHHTTCSCEE---EESSHHHHHHHHHHH--CCS----EEEECSSCS--SSCHHHHHHHHHHTTCC--CEE
T ss_pred CHHHHHHHHHHHHhcCcEEE---EECCHHHHHHHHhcc--CCC----EEEEeCCCC--CCCHHHHHHHHHhcCCC--CcE
Confidence 55666667776665322111 122234455555544 333 788899886 46777888888776454 458
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEec--CCCchHHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCM--DLTEIPQILQQIF 354 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~--dt~~lP~il~qIf 354 (360)
|++++-.+... ..+.+-+| ..|+.. +..+|-..++++.
T Consensus 83 i~~s~~~~~~~-~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 123 (137)
T 3hdg_A 83 IVISAFSEMKY-FIKAIELGVHLFLPKPIEPGRLMETLEDFR 123 (137)
T ss_dssp EECCCCCCHHH-HHHHHHHCCSEECCSSCCHHHHHHHHHHHH
T ss_pred EEEecCcChHH-HHHHHhCCcceeEcCCCCHHHHHHHHHHHH
Confidence 88887665433 22333333 345554 4445555555544
No 93
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=29.37 E-value=3.4e+02 Score=26.67 Aligned_cols=152 Identities=15% Similarity=0.194 Sum_probs=89.8
Q ss_pred CCchhhHHHH---hhccccceeEeeeecc--C------CCCccccc-cCCCCCCCchHHHHHHHHHHHh-hccccCCcch
Q psy11447 193 GSDLGTSLEA---FQDFDQRISLDIIGHS--G------ETHSIPFV-TSNNLPRDNKQRLEVIKIMHAH-AQFCASGDYT 259 (360)
Q Consensus 193 ~~DL~rvMEa---f~g~e~k~~ydivGHS--G------d~~~i~lV-~~~~~Pk~~keRl~vl~~M~aH-~Qfc~sGD~T 259 (360)
|.+.+.+-++ |.+...|+.+ ++.. + ++ +.++ ....-|.+-+.=++.++.+... .=.|..|.|+
T Consensus 311 gi~~~~i~~~L~~f~g~~~R~e~--v~~~~~~~~~~~~~g--~~vi~DyaHnp~~i~a~l~al~~~~~~~rii~V~g~~~ 386 (494)
T 4hv4_A 311 GIEDEDILRALVGFQGTGRRFDF--LGNFPLAPVNGKEGS--AMLVDDYGHHPTEVDATIKAARAGWPDKRIVMLFQPHR 386 (494)
T ss_dssp TCCHHHHHHHHHHCCCBTTSSEE--EEEEESHHHHSCSSE--EEEEEECCCSHHHHHHHHHHHHHHCTTSEEEEEECCBC
T ss_pred CCCHHHHHHHHHhCCCCCCccEE--eeeccccccccCCCC--eEEEEeCCCCHHHHHHHHHHHHhhcCCCeEEEEEcCCC
Confidence 5665554444 4555677764 5542 1 12 3333 3444566666666777655322 2357778776
Q ss_pred HHHHHHHHHHHHhhcccCCCeEEEEEecCCccc----cCCChhHHHHHHhcCcccccEEEEEecCchHHHHHHHhhCCCC
Q psy11447 260 LESIRASIQDLTTECAQHDDSILIVLSDANLDR----YGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAG 335 (360)
Q Consensus 260 lea~~~ai~~~a~~~~daDe~fVivlSDANL~R----YgI~p~~l~~~l~~~~p~V~a~~IfIgslgdqA~~l~~~Lp~G 335 (360)
-...+.-..++++.-..+| .||+.++ |-.+ .|+++++|++.+... ...+ +.++.++.+-.+.+.+...+|
T Consensus 387 ~~r~k~~~~~~~~~~~~aD--~vilt~~-~~~~e~p~~g~~~~~l~~~~~~~-g~~~--~~~~~~~~eAv~~a~~~a~~g 460 (494)
T 4hv4_A 387 YTRTRDLYDDFANVLSQVD--VLLMLDV-YAAGEPPIPGADSRALCRTIRNR-GKLD--PILVPDSESAPEMLAQILNGE 460 (494)
T ss_dssp HHHHHHTHHHHHHHHTTSS--EEEEECC-BCTTCCCCTTCSHHHHHHHHHTT-TSCC--CEEECCTTTHHHHHHHHCCTT
T ss_pred CCchHHHHHHHHHHHhcCC--EEEEeCC-cCCccCCcCCccHHHHHHHHHhh-CCCC--eEEeCCHHHHHHHHHHhCCCC
Confidence 5555554555554211555 3444333 3222 689999999999763 2222 456788777777777888889
Q ss_pred ceEEecCCCchHHHHHHHH
Q psy11447 336 RGFVCMDLTEIPQILQQIF 354 (360)
Q Consensus 336 r~fv~~dt~~lP~il~qIf 354 (360)
-..+++=..++-.+-+.|.
T Consensus 461 DvVL~~GaG~~~~~~~~l~ 479 (494)
T 4hv4_A 461 DLILVQGAGNIGKIARKLA 479 (494)
T ss_dssp EEEEEECSSTHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHH
Confidence 8888886666666655554
No 94
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=29.27 E-value=81 Score=23.19 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=42.1
Q ss_pred EEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCchHHHHHHHhhCCCCc-eEEec--CCCchHHHHHHHH
Q psy11447 281 ILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAGR-GFVCM--DLTEIPQILQQIF 354 (360)
Q Consensus 281 fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgdqA~~l~~~Lp~Gr-~fv~~--dt~~lP~il~qIf 354 (360)
+=+++.|.++. +.+.-++.+.|......-+.-+|++++-++ .+...+.+.+|- .|+.. +..+|-..++.++
T Consensus 47 ~dlvi~D~~l~--~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~-~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~ 120 (127)
T 2jba_A 47 PDLILLAWMLP--GGSGIQFIKHLRRESMTRDIPVVMLTARGE-EEDRVRGLETGADDCITKPFSPKELVARIKAVM 120 (127)
T ss_dssp CSEEEEESEET--TEEHHHHHHHHHTSTTTTTSCEEEEEETTH-HHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHH
T ss_pred CCEEEEecCCC--CCCHHHHHHHHHhCcccCCCCEEEEeCCCC-HHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Confidence 34677798886 345556777777652123456788877554 455667777774 56665 3334444444443
No 95
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=28.79 E-value=1.7e+02 Score=21.30 Aligned_cols=104 Identities=13% Similarity=0.168 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|-.. +......|++.+... ..| +++.|.++. |.+--++.+.|... | +.-+
T Consensus 12 ~~~~~~~l~~~l~~~~~~v~---~~~~~~~a~~~~~~~--~~d----lvi~D~~l~--~~~g~~~~~~l~~~-~--~~~i 77 (123)
T 1xhf_A 12 ELVTRNTLKSIFEAEGYDVF---EATDGAEMHQILSEY--DIN----LVIMDINLP--GKNGLLLARELREQ-A--NVAL 77 (123)
T ss_dssp CHHHHHHHHHHHHTTTCEEE---EESSHHHHHHHHHHS--CCS----EEEECSSCS--SSCHHHHHHHHHHH-C--CCEE
T ss_pred CHHHHHHHHHHHhhCCcEEE---EeCCHHHHHHHHhcC--CCC----EEEEcCCCC--CCCHHHHHHHHHhC-C--CCcE
Confidence 34455556655543222110 112223445555443 333 677899886 45666777777765 5 4567
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEecC--CCchHHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCMD--LTEIPQILQQIF 354 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~d--t~~lP~il~qIf 354 (360)
|++.+.++.... .+.+.+| ..|+... ..+|-..++.++
T Consensus 78 i~~s~~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 118 (123)
T 1xhf_A 78 MFLTGRDNEVDK-ILGLEIGADDYITKPFNPRELTIRARNLL 118 (123)
T ss_dssp EEEESCCSHHHH-HHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEEECCCChHHH-HHHHhcCcceEEeCCCCHHHHHHHHHHHH
Confidence 777765554332 2233333 4676653 334444444443
No 96
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=28.77 E-value=91 Score=23.48 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=56.1
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|-.. +......|++.+.+. .+=+||.|.++. +.+.-++.+.+..+...-+.-+
T Consensus 16 ~~~~~~~l~~~L~~~g~~v~---~~~~~~~a~~~l~~~------~~dlii~d~~l~--~~~g~~~~~~l~~~~~~~~~pi 84 (142)
T 3cg4_A 16 DAHVRIAVKTILSDAGFHII---SADSGGQCIDLLKKG------FSGVVLLDIMMP--GMDGWDTIRAILDNSLEQGIAI 84 (142)
T ss_dssp CHHHHHHHHHHHHHTTCEEE---EESSHHHHHHHHHTC------CCEEEEEESCCS--SSCHHHHHHHHHHTTCCTTEEE
T ss_pred CHHHHHHHHHHHHHCCeEEE---EeCCHHHHHHHHHhc------CCCEEEEeCCCC--CCCHHHHHHHHHhhcccCCCCE
Confidence 45556666666554333211 222234555555443 355788898886 4666777777876312235678
Q ss_pred EEecCchHHHHHHHhhCCCCc-eEEec--CCCchHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAGR-GFVCM--DLTEIPQILQQI 353 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~Gr-~fv~~--dt~~lP~il~qI 353 (360)
|++++..+ .+...+.+.+|- .|+.. +..+|-..++.+
T Consensus 85 i~~s~~~~-~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 124 (142)
T 3cg4_A 85 VMLTAKNA-PDAKMIGLQEYVVDYITKPFDNEDLIEKTTFF 124 (142)
T ss_dssp EEEECTTC-CCCSSTTGGGGEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEECCCC-HHHHHHHHhcCccEEEeCCCCHHHHHHHHHHH
Confidence 88877544 233344444453 44444 233444444443
No 97
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=27.10 E-value=99 Score=23.91 Aligned_cols=104 Identities=17% Similarity=0.225 Sum_probs=53.8
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|-.. +......|++.+... . +=+|+.|.++. +.+.-++.+.|....|. .-+
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~---~~~~~~~a~~~l~~~--~----~dliild~~l~--~~~g~~~~~~l~~~~~~--~pi 78 (155)
T 1qkk_A 12 DRDLRKAMQQTLELAGFTVS---SFASATEALAGLSAD--F----AGIVISDIRMP--GMDGLALFRKILALDPD--LPM 78 (155)
T ss_dssp CHHHHHHHHHHHHHTTCEEE---EESCHHHHHHTCCTT--C----CSEEEEESCCS--SSCHHHHHHHHHHHCTT--SCE
T ss_pred CHHHHHHHHHHHHHcCcEEE---EECCHHHHHHHHHhC--C----CCEEEEeCCCC--CCCHHHHHHHHHhhCCC--CCE
Confidence 34555566666554333221 112234455544433 2 34777788886 46666777777664354 457
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEec--CCCchHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCM--DLTEIPQILQQI 353 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~--dt~~lP~il~qI 353 (360)
|++++..+. +...+.+.+| ..|+.. +..+|-+.++.+
T Consensus 79 i~ls~~~~~-~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~ 118 (155)
T 1qkk_A 79 ILVTGHGDI-PMAVQAIQDGAYDFIAKPFAADRLVQSARRA 118 (155)
T ss_dssp EEEECGGGH-HHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred EEEECCCCh-HHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Confidence 777775553 3334444445 456554 333444444444
No 98
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=26.97 E-value=83 Score=23.94 Aligned_cols=70 Identities=13% Similarity=0.263 Sum_probs=38.4
Q ss_pred EEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCchHHHHHHHhhCCCC-ceEEec--CCCchHHHHHHHH
Q psy11447 282 LIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAG-RGFVCM--DLTEIPQILQQIF 354 (360)
Q Consensus 282 VivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgdqA~~l~~~Lp~G-r~fv~~--dt~~lP~il~qIf 354 (360)
-+||.|.++. +.+.-++.+.|......-+.-+|++++.++.. .+.+.+.+| ..|+.. +..+|-..++.++
T Consensus 54 dlii~d~~l~--~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~-~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~ 126 (147)
T 2zay_A 54 HLIITEANMP--KISGMDLFNSLKKNPQTASIPVIALSGRATAK-EEAQLLDMGFIDFIAKPVNAIRLSARIKRVL 126 (147)
T ss_dssp SEEEEESCCS--SSCHHHHHHHHHTSTTTTTSCEEEEESSCCHH-HHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEcCCCC--CCCHHHHHHHHHcCcccCCCCEEEEeCCCCHH-HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 3677788886 56677788888763112345577777755533 233333334 355554 2334444444443
No 99
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=26.85 E-value=2e+02 Score=21.47 Aligned_cols=110 Identities=12% Similarity=0.074 Sum_probs=57.8
Q ss_pred chHHHHHHHHHHHhhcc---ccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCc--cc
Q psy11447 236 NKQRLEVIKIMHAHAQF---CASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEA--AS 310 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qf---c~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~--p~ 310 (360)
+....+.++.+.....| |..-.+. ..|++.+.+.. .....+=+||.|.++. +.+--++.+.|.+.. ..
T Consensus 18 ~~~~~~~l~~~l~~~~~~~~v~~~~~~----~~a~~~l~~~~-~~~~~~dlvi~D~~l~--~~~g~~~~~~l~~~~~~~~ 90 (146)
T 3ilh_A 18 DDIVNFLNTTIIRMTHRVEEIQSVTSG----NAAINKLNELY-AAGRWPSIICIDINMP--GINGWELIDLFKQHFQPMK 90 (146)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEEESSH----HHHHHHHHHHH-TSSCCCSEEEEESSCS--SSCHHHHHHHHHHHCGGGT
T ss_pred CHHHHHHHHHHHHhcCCCeeeeecCCH----HHHHHHHHHhh-ccCCCCCEEEEcCCCC--CCCHHHHHHHHHHhhhhcc
Confidence 44556677777665544 2222222 23333343310 1112455788899997 577788888887731 12
Q ss_pred ccEEEEEecCchHHHHHHHhhCCCC--ceEEecC--CCchHHHHHHH
Q psy11447 311 VRAYAIFIGSLGDQAKRLTQELPAG--RGFVCMD--LTEIPQILQQI 353 (360)
Q Consensus 311 V~a~~IfIgslgdqA~~l~~~Lp~G--r~fv~~d--t~~lP~il~qI 353 (360)
-+.-+|++.+-.+... +.+.+-+| ..|+..- ..+|-..+++.
T Consensus 91 ~~~~ii~~t~~~~~~~-~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~ 136 (146)
T 3ilh_A 91 NKSIVCLLSSSLDPRD-QAKAEASDWVDYYVSKPLTANALNNLYNKV 136 (146)
T ss_dssp TTCEEEEECSSCCHHH-HHHHHHCSSCCEEECSSCCHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCChHH-HHHHHhcCCcceeeeCCCCHHHHHHHHHHH
Confidence 3556777777554433 33444445 4566653 33444444433
No 100
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A
Probab=26.08 E-value=62 Score=27.95 Aligned_cols=43 Identities=19% Similarity=0.174 Sum_probs=25.4
Q ss_pred HHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCC
Q psy11447 246 MHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIA 296 (360)
Q Consensus 246 M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~ 296 (360)
+|.||.||.=|..|++.+-. ...+. ..=+|++||-|-.-+|..
T Consensus 6 lH~Ht~~Sd~g~~~~~e~v~---~A~~~-----Gl~~iaiTDH~~~~~~~~ 48 (245)
T 1m65_A 6 LHMHTVASTHAYSTLSDYIA---QAKQK-----GIKLFAITDHGPDMEDAP 48 (245)
T ss_dssp CCBCCTTSTTCCCCHHHHHH---HHHHH-----TCCEEEEEEECTTSTTCC
T ss_pred eCcCCCCCCCCCCcHHHHHH---HHHHC-----CCCEEEECCCCCCCCCCc
Confidence 58999998656667764322 22221 234788899875334443
No 101
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=25.98 E-value=1.2e+02 Score=28.10 Aligned_cols=105 Identities=14% Similarity=0.168 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+..-.+.++.+.....|-.. |......|++.+.+. . +=+||+|-++. |++--++.+.+.+..|. .-+
T Consensus 14 ~~~~~~~l~~~L~~~g~~v~---~a~~~~~al~~~~~~--~----~dlvllD~~mp--~~~G~~~~~~lr~~~~~--~pi 80 (394)
T 3eq2_A 14 DEVVRESLAAYLEDSNFKVL---QALNGLQGLQIFESE--Q----PDLVICDLRMP--QIDGLELIRRIRQTASE--TPI 80 (394)
T ss_dssp CHHHHHHHHHHHHHTTEEEE---ECSSHHHHHHHHHHS--C----CSEEEECCCSS--SSCTHHHHHHHHHTTCC--CCE
T ss_pred CHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHhhC--C----CCEEEEcCCCC--CCCHHHHHHHHHhhCCC--CcE
Confidence 34455666666654433221 233344566666544 3 34889999997 67777888888776454 568
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEecCC---CchHHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCMDL---TEIPQILQQIF 354 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~dt---~~lP~il~qIf 354 (360)
|++.+.++.... .+.+-.| ..|+..-. ..|-..++.++
T Consensus 81 i~lt~~~~~~~~-~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~ 122 (394)
T 3eq2_A 81 IVLSGAGVMSDA-VEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 (394)
T ss_dssp EEC---CHHHHH-HHHHHHTCSEECCSSCSCTHHHHHHHHHHH
T ss_pred EEEEcCCCHHHH-HHHHhcChhhEEECCCChHHHHHHHHHHHH
Confidence 898887665433 3333334 56777743 34444454444
No 102
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=25.81 E-value=9.1 Score=29.31 Aligned_cols=56 Identities=11% Similarity=-0.089 Sum_probs=34.8
Q ss_pred EEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCchHHHHHHHhhCCCC-ceEEec
Q psy11447 281 ILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAG-RGFVCM 341 (360)
Q Consensus 281 fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgdqA~~l~~~Lp~G-r~fv~~ 341 (360)
+=+||.|.++.. .+.-++.+.+....| +.-+|++.+.++.... .+.+-+| ..|+..
T Consensus 60 ~dlvi~D~~l~~--~~g~~~~~~l~~~~~--~~~ii~~s~~~~~~~~-~~~~~~g~~~~l~K 116 (135)
T 3snk_A 60 PGIVILDLGGGD--LLGKPGIVEARALWA--TVPLIAVSDELTSEQT-RVLVRMNASDWLHK 116 (135)
T ss_dssp CSEEEEEEETTG--GGGSTTHHHHHGGGT--TCCEEEEESCCCHHHH-HHHHHTTCSEEEES
T ss_pred CCEEEEeCCCCC--chHHHHHHHHHhhCC--CCcEEEEeCCCCHHHH-HHHHHcCcHhhccC
Confidence 447788888863 455567777777645 5668888876654433 3333344 556665
No 103
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=25.44 E-value=2.1e+02 Score=21.36 Aligned_cols=99 Identities=8% Similarity=0.026 Sum_probs=53.8
Q ss_pred chHHHHHHHHHHHhhcc---ccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCccccc
Q psy11447 236 NKQRLEVIKIMHAHAQF---CASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVR 312 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qf---c~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~ 312 (360)
+....+.++.+.....| |..-.+ ...|++.+.+.....+..+=+||.|.++. +.+.-++.+.+......-+
T Consensus 16 ~~~~~~~l~~~L~~~g~~~~v~~~~~----~~~a~~~l~~~~~~~~~~~dlii~D~~l~--~~~g~~~~~~l~~~~~~~~ 89 (143)
T 2qvg_A 16 DEVDIQSVERVFHKISSLIKIEIAKS----GNQALDMLYGRNKENKIHPKLILLDINIP--KMNGIEFLKELRDDSSFTD 89 (143)
T ss_dssp CHHHHHHHHHHHHHHCTTCCEEEESS----HHHHHHHHHTCTTCCCCCCSEEEEETTCT--TSCHHHHHHHHTTSGGGTT
T ss_pred CHHHHHHHHHHHHHhCCCceEEEECC----HHHHHHHHHhcccccCCCCCEEEEecCCC--CCCHHHHHHHHHcCccccC
Confidence 45566666666654433 111111 23444444331001123455788898886 4667788888877632245
Q ss_pred EEEEEecCchHHHHHHHhhCCCCc-eEEec
Q psy11447 313 AYAIFIGSLGDQAKRLTQELPAGR-GFVCM 341 (360)
Q Consensus 313 a~~IfIgslgdqA~~l~~~Lp~Gr-~fv~~ 341 (360)
.-+|++++-.+ .+.+.+.+.+|- .|+..
T Consensus 90 ~~ii~ls~~~~-~~~~~~~~~~g~~~~l~k 118 (143)
T 2qvg_A 90 IEVFVLTAAYT-SKDKLAFESLNIRGHLIK 118 (143)
T ss_dssp CEEEEEESCCC-HHHHHHHTTTTCCEEEES
T ss_pred CcEEEEeCCCC-HHHHHHHHhcCCCeEEEC
Confidence 66777777444 455566666674 44443
No 104
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=25.42 E-value=1e+02 Score=23.47 Aligned_cols=104 Identities=9% Similarity=0.178 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|... +......|++.+.+. ..| +||.|.++. +.+--++.+.|... + +.-+
T Consensus 13 ~~~~~~~l~~~L~~~g~~v~---~~~~~~~al~~~~~~--~~d----lvllD~~l~--~~~g~~l~~~l~~~-~--~~~i 78 (136)
T 2qzj_A 13 DKDNCQKLKGFLEEKGISID---LAYNCEEAIGKIFSN--KYD----LIFLEIILS--DGDGWTLCKKIRNV-T--TCPI 78 (136)
T ss_dssp CHHHHHHHHHHHHTTTCEEE---EESSHHHHHHHHHHC--CCS----EEEEESEET--TEEHHHHHHHHHTT-C--CCCE
T ss_pred CHHHHHHHHHHHHHCCCEEE---EECCHHHHHHHHHhc--CCC----EEEEeCCCC--CCCHHHHHHHHccC-C--CCCE
Confidence 44555666666654333211 222234555555443 333 667798885 44556777777765 5 5667
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEec--CCCchHHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCM--DLTEIPQILQQIF 354 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~--dt~~lP~il~qIf 354 (360)
|++++.++.. ...+.+-+| ..|+.. +..+|-..++.+.
T Consensus 79 i~ls~~~~~~-~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~ 119 (136)
T 2qzj_A 79 VYMTYINEDQ-SILNALNSGGDDYLIKPLNLEILYAKVKAIL 119 (136)
T ss_dssp EEEESCCCHH-HHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred EEEEcCCCHH-HHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 8887755443 233333334 466665 3334444454443
No 105
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=24.92 E-value=2.1e+02 Score=21.03 Aligned_cols=114 Identities=15% Similarity=0.164 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHHhhcc--ccCCcchHHHHHHHHHHHHhhc-ccCCCeEEEEEecCCccccCCChhHHHHHHhcCccccc
Q psy11447 236 NKQRLEVIKIMHAHAQF--CASGDYTLESIRASIQDLTTEC-AQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVR 312 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qf--c~sGD~Tlea~~~ai~~~a~~~-~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~ 312 (360)
+....+.++.+.....| ... +......|++.+.... .-.+..+=+|+.|.++. +.+.-++.+.|....+.-+
T Consensus 11 ~~~~~~~l~~~L~~~~~~~~v~---~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~--~~~g~~~~~~l~~~~~~~~ 85 (140)
T 1k68_A 11 NKADIRLIQEALANSTVPHEVV---TVRDGMEAMAYLRQEGEYANASRPDLILLXLNLP--KKDGREVLAEIKSDPTLKR 85 (140)
T ss_dssp CHHHHHHHHHHHHTCSSCCEEE---EECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCS--SSCHHHHHHHHHHSTTGGG
T ss_pred CHHHHHHHHHHHHhcCCCceEE---EECCHHHHHHHHHcccccccCCCCcEEEEecCCC--cccHHHHHHHHHcCccccc
Confidence 45556666666654332 110 1122334455554300 00013455788899886 5667788888877631134
Q ss_pred EEEEEecCchHHHHHHHhhCCCC-ceEEec--CCCchHHHHHHHHH
Q psy11447 313 AYAIFIGSLGDQAKRLTQELPAG-RGFVCM--DLTEIPQILQQIFS 355 (360)
Q Consensus 313 a~~IfIgslgdqA~~l~~~Lp~G-r~fv~~--dt~~lP~il~qIf~ 355 (360)
.-+|++++-.+.. .+.+.+-+| ..|+.. +..+|-..+++++.
T Consensus 86 ~pii~ls~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 86 IPVVVLSTSINED-DIFHSYDLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp SCEEEEESCCCHH-HHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred ccEEEEecCCcHH-HHHHHHHhchhheecCCCCHHHHHHHHHHHHH
Confidence 5567776655432 233333344 456665 34456666666544
No 106
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A
Probab=24.46 E-value=48 Score=27.71 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCchHHHHHHHhhCCCCceEEec
Q psy11447 262 SIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAGRGFVCM 341 (360)
Q Consensus 262 a~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgdqA~~l~~~Lp~Gr~fv~~ 341 (360)
+.+.+++.+.- +.++ ++++-|. +..+..+-.. ...+|.++.-....+.+.+. +--||+-
T Consensus 171 ~~~~~~~~lg~---~~~~--~i~vGD~--------~~Di~~a~~a-----G~~~i~v~~~~~~~~~l~~~---~ad~v~~ 229 (243)
T 3qxg_A 171 PYLMALKKGGL---KADE--AVVIENA--------PLGVEAGHKA-----GIFTIAVNTGPLDGQVLLDA---GADLLFP 229 (243)
T ss_dssp HHHHHHHHTTC---CGGG--EEEEECS--------HHHHHHHHHT-----TCEEEEECCSSSCHHHHHHT---TCSEEES
T ss_pred HHHHHHHHcCC---CHHH--eEEEeCC--------HHHHHHHHHC-----CCEEEEEeCCCCCHHHHHhc---CCCEEEC
Confidence 44455555431 2222 5666664 3344444433 33456666634445555553 3479999
Q ss_pred CCCchHHHHHHH
Q psy11447 342 DLTEIPQILQQI 353 (360)
Q Consensus 342 dt~~lP~il~qI 353 (360)
+..+|+.+|++|
T Consensus 230 s~~el~~~l~~l 241 (243)
T 3qxg_A 230 SMQTLCDSWDTI 241 (243)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHhh
Confidence 999999999886
No 107
>2cyj_A Hypothetical protein PH1505; conserved hypothetical protein, structural genomics, NPPSFA; HET: OCS; 1.50A {Pyrococcus horikoshii} SCOP: c.103.1.1
Probab=23.90 E-value=25 Score=29.11 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=32.9
Q ss_pred CChhHHHHHHhcCcccccEEEEEecCchHH-H---HHHHhhCCCCceEEecCCCc
Q psy11447 295 IAPREMGEALNAEAASVRAYAIFIGSLGDQ-A---KRLTQELPAGRGFVCMDLTE 345 (360)
Q Consensus 295 I~p~~l~~~l~~~~p~V~a~~IfIgslgdq-A---~~l~~~Lp~Gr~fv~~dt~~ 345 (360)
|+|+.|..+|..+ |+ +|+||+.-.+ . ..+.+.|-.. +..||||..
T Consensus 48 l~~~~~~~ll~~~-~e----vlliGTG~~~~~~~~~~~~~~l~~~-~ve~M~T~a 96 (118)
T 2cyj_A 48 LDPEELEKYLVED-FD----VLLVGTGIYGMLSLLPESKKLVEDK-EVIEKPTKE 96 (118)
T ss_dssp ECHHHHHTTTTSC-CS----EEEEEECTTCCCEECHHHHHHTTTS-EEEEECHHH
T ss_pred CCHHHHHHHHhcC-CC----EEEECCCCCccccCCHHHHHHHHHC-CcEEeCHHH
Confidence 4899999999876 55 5899994443 2 4566667655 899999864
No 108
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=23.88 E-value=1.9e+02 Score=20.79 Aligned_cols=103 Identities=14% Similarity=0.184 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|... +......|+..+.+. ..| +++.|.++. +.+.-++.+.+... |.+ -+
T Consensus 10 ~~~~~~~l~~~l~~~~~~v~---~~~~~~~~~~~~~~~--~~d----lvi~D~~l~--~~~g~~~~~~l~~~-~~~--~i 75 (121)
T 1zh2_A 10 EQAIRRFLRTALEGDGMRVF---EAETLQRGLLEAATR--KPD----LIILDLGLP--DGDGIEFIRDLRQW-SAV--PV 75 (121)
T ss_dssp CHHHHHHHHHHHHTTTCEEE---EESSHHHHHHHHHHH--CCS----EEEEESEET--TEEHHHHHHHHHTT-CCC--CE
T ss_pred CHHHHHHHHHHHhcCCCEEE---EeCCHHHHHHHHhcC--CCC----EEEEeCCCC--CCcHHHHHHHHHhC-CCC--cE
Confidence 44555666666654444221 111123344444443 333 667788885 34555677777654 654 46
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEecCC--CchHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCMDL--TEIPQILQQI 353 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~dt--~~lP~il~qI 353 (360)
|++++.++... ..+.+.+| ..|+.... .+|-..++.+
T Consensus 76 i~~s~~~~~~~-~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~ 115 (121)
T 1zh2_A 76 IVLSARSEESD-KIAALDAGADDYLSKPFGIGELQARLRVA 115 (121)
T ss_dssp EEEESCCSHHH-HHHHHHHTCSEEEESSCCHHHHHHHHHHH
T ss_pred EEEECCCCHHH-HHHHHhcCCCeEEeCCcCHHHHHHHHHHH
Confidence 77766555432 22333333 46666532 3344444433
No 109
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=23.84 E-value=41 Score=30.01 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=25.6
Q ss_pred cchHHHHHHHHHHHHhhcccCC-----CeEEEEEecCCcccc
Q psy11447 257 DYTLESIRASIQDLTTECAQHD-----DSILIVLSDANLDRY 293 (360)
Q Consensus 257 D~Tlea~~~ai~~~a~~~~daD-----e~fVivlSDANL~RY 293 (360)
.||++|.+.|++.=+. -.|.| |..+||+-|.+|+|-
T Consensus 16 ENTl~Af~~A~~~Gad-~iE~DV~lTkDg~lVv~HD~~l~Rt 56 (248)
T 1zcc_A 16 ENTFAAADLALQQGAD-YIELDVRESADGVLYVIHDETLDRT 56 (248)
T ss_dssp SSSHHHHHHHHHTTCS-EEEEEEEECTTCCEEECSSSBTTTT
T ss_pred chHHHHHHHHHHcCCC-EEEEEeeEcCCCCEEEECCCccccc
Confidence 5899999999975321 11222 467889999999983
No 110
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=23.01 E-value=2.1e+02 Score=20.53 Aligned_cols=107 Identities=12% Similarity=0.165 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|-.. +......|++.+.+. .. =+++.|.++.. +.+.-++.+.+......-+.-+
T Consensus 14 ~~~~~~~l~~~L~~~g~~v~---~~~~~~~a~~~~~~~--~~----dlvi~d~~~~~-~~~g~~~~~~l~~~~~~~~~~i 83 (127)
T 2gkg_A 14 DTALSATLRSALEGRGFTVD---ETTDGKGSVEQIRRD--RP----DLVVLAVDLSA-GQNGYLICGKLKKDDDLKNVPI 83 (127)
T ss_dssp CHHHHHHHHHHHHHHTCEEE---EECCHHHHHHHHHHH--CC----SEEEEESBCGG-GCBHHHHHHHHHHSTTTTTSCE
T ss_pred CHHHHHHHHHHHHhcCceEE---EecCHHHHHHHHHhc--CC----CEEEEeCCCCC-CCCHHHHHHHHhcCccccCCCE
Confidence 34445555555544333221 112223444545444 33 36677888751 3455677777776511224456
Q ss_pred EEecCchHHHHHHHhhCCCCc-eEEec--CCCchHHHHHHHH
Q psy11447 316 IFIGSLGDQAKRLTQELPAGR-GFVCM--DLTEIPQILQQIF 354 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~Gr-~fv~~--dt~~lP~il~qIf 354 (360)
|++++ .+ .+...+.+.+|- .|+.. +..+|-..+++++
T Consensus 84 i~~~~-~~-~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 123 (127)
T 2gkg_A 84 VIIGN-PD-GFAQHRKLKAHADEYVAKPVDADQLVERAGALI 123 (127)
T ss_dssp EEEEC-GG-GHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEEec-CC-chhHHHHHHhCcchheeCCCCHHHHHHHHHHHH
Confidence 66643 33 344455666664 55554 3334444444443
No 111
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=21.99 E-value=1.5e+02 Score=21.52 Aligned_cols=95 Identities=8% Similarity=0.105 Sum_probs=46.0
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEE
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYA 315 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~ 315 (360)
+....+.++.+.....|-.. +......|++.+... .. -+++.|-++. +++--++.+.|....+.-+.-+
T Consensus 10 ~~~~~~~l~~~L~~~~~~v~---~~~~~~~a~~~~~~~--~~----dlvi~D~~l~--~~~g~~~~~~l~~~~~~~~~~i 78 (124)
T 1mb3_A 10 NELNMKLFHDLLEAQGYETL---QTREGLSALSIAREN--KP----DLILMDIQLP--EISGLEVTKWLKEDDDLAHIPV 78 (124)
T ss_dssp CHHHHHHHHHHHHHTTCEEE---EESCHHHHHHHHHHH--CC----SEEEEESBCS--SSBHHHHHHHHHHSTTTTTSCE
T ss_pred CHHHHHHHHHHHHHcCcEEE---EeCCHHHHHHHHhcC--CC----CEEEEeCCCC--CCCHHHHHHHHHcCccccCCcE
Confidence 44556666666654333211 111123444444433 33 3777898886 4556677777776412234567
Q ss_pred EEecCchHHHHHHHhhCCCC-ceEEecC
Q psy11447 316 IFIGSLGDQAKRLTQELPAG-RGFVCMD 342 (360)
Q Consensus 316 IfIgslgdqA~~l~~~Lp~G-r~fv~~d 342 (360)
|++.+.++.. ...+.+.+| ..|+...
T Consensus 79 i~~s~~~~~~-~~~~~~~~g~~~~l~KP 105 (124)
T 1mb3_A 79 VAVTAFAMKG-DEERIREGGCEAYISKP 105 (124)
T ss_dssp EEEC-------CHHHHHHHTCSEEECSS
T ss_pred EEEECCCCHH-HHHHHHhCCCCEEEeCC
Confidence 8887654432 222222233 4677664
No 112
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=21.25 E-value=53 Score=29.33 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=24.6
Q ss_pred cchHHHHHHHHHHHHhhcccCC-----CeEEEEEecCCccc
Q psy11447 257 DYTLESIRASIQDLTTECAQHD-----DSILIVLSDANLDR 292 (360)
Q Consensus 257 D~Tlea~~~ai~~~a~~~~daD-----e~fVivlSDANL~R 292 (360)
.||++|.+.|++.=+. ..|.| |..+||+-|.+|+|
T Consensus 24 ENTl~af~~A~~~G~d-~iE~DV~lT~Dg~~Vv~HD~~l~r 63 (252)
T 3qvq_A 24 ENTLASLHLAGQQGIK-WVEIDVMLSGDGIPVIFHDDYLSR 63 (252)
T ss_dssp TTSHHHHHHHHHTTCS-EEEEEEEECTTSCEEECCCSBSTT
T ss_pred ccHHHHHHHHHHcCCC-EEEEEEEECCCCcEEEECCCcccc
Confidence 4899999999975321 11222 35588899999987
No 113
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=21.17 E-value=1.6e+02 Score=22.51 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=36.9
Q ss_pred EEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCchHHHHHHHhhCCCC-ceEEec--CCCchHHHHHHHH
Q psy11447 283 IVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAG-RGFVCM--DLTEIPQILQQIF 354 (360)
Q Consensus 283 ivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgdqA~~l~~~Lp~G-r~fv~~--dt~~lP~il~qIf 354 (360)
+||.|.++. +++--++.+.|....| +.-+|++.+..+. +.+.+.+.+| ..|+.. +..+|-..++.+.
T Consensus 52 lvllD~~lp--~~~g~~l~~~l~~~~~--~~~ii~ls~~~~~-~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 121 (141)
T 3cu5_A 52 VLLTDVRMP--RMDGIELVDNILKLYP--DCSVIFMSGYSDK-EYLKAAIKFRAIRYVEKPIDPSEIMDALKQSI 121 (141)
T ss_dssp EEEEESCCS--SSCHHHHHHHHHHHCT--TCEEEEECCSTTT-CCC------CCCEEECSSCCHHHHHHHHHHHH
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhhCC--CCcEEEEeCCCcH-HHHHHHHhCCccEEEeCCCCHHHHHHHHHHHH
Confidence 778898886 4556677777765435 4568888775543 2334444445 466665 3345555555544
No 114
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=21.14 E-value=1.9e+02 Score=24.66 Aligned_cols=43 Identities=9% Similarity=0.014 Sum_probs=20.8
Q ss_pred HHHHHHhcCcccccEEEEEecCchHHHHH-------HHhhCCCCceEEecCCCc
Q psy11447 299 EMGEALNAEAASVRAYAIFIGSLGDQAKR-------LTQELPAGRGFVCMDLTE 345 (360)
Q Consensus 299 ~l~~~l~~~~p~V~a~~IfIgslgdqA~~-------l~~~Lp~Gr~fv~~dt~~ 345 (360)
.+.++|.+. |++.|. |..+ +..|.- .-..+|.-=+.++.|...
T Consensus 182 ~~~~~l~~~-~~~~ai--~~~~-d~~a~g~~~al~~~g~~vP~di~vig~d~~~ 231 (292)
T 3k4h_A 182 AVEELMGLQ-QPPTAI--MATD-DLIGLGVLSALSKKGFVVPKDVSIVSFNNAL 231 (292)
T ss_dssp HHHHHHTSS-SCCSEE--EESS-HHHHHHHHHHHHHTTCCTTTTCEEEEESCCH
T ss_pred HHHHHHcCC-CCCcEE--EEcC-hHHHHHHHHHHHHhCCCCCCeEEEEEecCcc
Confidence 355666665 666643 2222 322221 222345455677777554
No 115
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=21.06 E-value=2.9e+02 Score=22.58 Aligned_cols=68 Identities=19% Similarity=0.324 Sum_probs=41.2
Q ss_pred EEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCchHHHHHHHhhCCCC-ceEEecC--CCchHHHHHHHHH
Q psy11447 283 IVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAG-RGFVCMD--LTEIPQILQQIFS 355 (360)
Q Consensus 283 ivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgdqA~~l~~~Lp~G-r~fv~~d--t~~lP~il~qIf~ 355 (360)
+||.|.++. |.+--++.+.+....|. .-+|++.+.++.. .+.+.+.+| ..|+... ..+|-..++.+..
T Consensus 54 lvllD~~lp--~~~g~~~~~~lr~~~~~--~~ii~ls~~~~~~-~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (215)
T 1a04_A 54 LILLDLNMP--GMNGLETLDKLREKSLS--GRIVVFSVSNHEE-DVVTALKRGADGYLLKDMEPEDLLKALHQAAA 124 (215)
T ss_dssp EEEEETTST--TSCHHHHHHHHHHSCCC--SEEEEEECCCCHH-HHHHHHHTTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCC--CCcHHHHHHHHHHhCCC--CcEEEEECCCCHH-HHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHc
Confidence 778899986 45666777777765464 4577777755543 333444444 4677763 3455555555543
No 116
>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous protein inhibitor, metalloprotease carboxypeptidase, hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: c.56.5.1 PDB: 4a94_A 2pcu_A*
Probab=21.04 E-value=55 Score=30.19 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=30.0
Q ss_pred hhhHHHHhhc-cccceeEeeeeccCCCCccccccCCCCCC
Q psy11447 196 LGTSLEAFQD-FDQRISLDIIGHSGETHSIPFVTSNNLPR 234 (360)
Q Consensus 196 L~rvMEaf~g-~e~k~~ydivGHSGd~~~i~lV~~~~~Pk 234 (360)
+...|+.+.. +.+..++..+|.|-+|..|..++.++.|.
T Consensus 16 i~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~ 55 (308)
T 2bo9_A 16 IYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKG 55 (308)
T ss_dssp HHHHHHHHHHHSTTTEEEEEEEECTTCCEEEEEEECSSTT
T ss_pred HHHHHHHHHHHCCCcEEEEeccccCCCCeEEEEEecCCCC
Confidence 4445555543 56788999999999999999999887544
No 117
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=20.64 E-value=4.5e+02 Score=24.53 Aligned_cols=114 Identities=15% Similarity=0.268 Sum_probs=66.5
Q ss_pred EeeeeccCCCCccccccCCCCCCCchHHHHHHHHHHHhhc-----cccCCc-chHHHHHHHHHHHHhhcccCCCeEEEE-
Q psy11447 212 LDIIGHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQ-----FCASGD-YTLESIRASIQDLTTECAQHDDSILIV- 284 (360)
Q Consensus 212 ydivGHSGd~~~i~lV~~~~~Pk~~keRl~vl~~M~aH~Q-----fc~sGD-~Tlea~~~ai~~~a~~~~daDe~fViv- 284 (360)
.=+.|.+|+++.+ +..||.+|++....++. ++-.|. +|-++++.+ +..++- -||--.|+.
T Consensus 61 l~v~GtTGE~~~L----------s~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la-~~A~~~--Gadavlv~~P 127 (314)
T 3qze_A 61 IVAVGTTGESATL----------DVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALT-EAAKSG--GADACLLVTP 127 (314)
T ss_dssp EEESSGGGTGGGC----------CHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHH-HHHHHT--TCSEEEEECC
T ss_pred EEECccccChhhC----------CHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHH-HHHHHc--CCCEEEEcCC
Confidence 3567999999874 68899999999988764 334454 566665544 334332 565333321
Q ss_pred ----EecC--------------------Cc---cccCCChhHHHHHHhcCcccccEEEEEecCchHHHHHHHhhCCCCce
Q psy11447 285 ----LSDA--------------------NL---DRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAGRG 337 (360)
Q Consensus 285 ----lSDA--------------------NL---~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgdqA~~l~~~Lp~Gr~ 337 (360)
.|+. |. ..+.|+|+.+.++. .. |+|-+.=---|++ ++..++.+..|.+-.
T Consensus 128 ~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La-~~-pnIvgiKdssgd~-~~~~~~~~~~~~~f~ 204 (314)
T 3qze_A 128 YYNKPTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLS-KV-PNIIGIKEATGDL-QRAKEVIERVGKDFL 204 (314)
T ss_dssp CSSCCCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCCCCHHHHHHHH-TS-TTEEEEEECSCCH-HHHHHHHHHSCTTSE
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHh-cC-CCEEEEEcCCCCH-HHHHHHHHHcCCCeE
Confidence 1221 11 23467888888876 44 8875444333443 345566666665444
Q ss_pred EEec
Q psy11447 338 FVCM 341 (360)
Q Consensus 338 fv~~ 341 (360)
..+-
T Consensus 205 v~~G 208 (314)
T 3qze_A 205 VYSG 208 (314)
T ss_dssp EEES
T ss_pred EEec
Confidence 4333
No 118
>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A
Probab=20.63 E-value=49 Score=31.23 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=26.1
Q ss_pred cchHHHHHHHHHHHHhhcccCC-----CeEEEEEecCCcccc
Q psy11447 257 DYTLESIRASIQDLTTECAQHD-----DSILIVLSDANLDRY 293 (360)
Q Consensus 257 D~Tlea~~~ai~~~a~~~~daD-----e~fVivlSDANL~RY 293 (360)
-||++|.+.|++.=+. ..|.| |..+||+-|.+|+|-
T Consensus 45 ENTl~Af~~A~~~Gad-~iE~DV~lTkDg~lVv~HD~~l~rt 85 (356)
T 1ydy_A 45 EHTLPAKAMAYAQGAD-YLEQDLVMTKDDNLVVLHDHYLDRV 85 (356)
T ss_dssp TTCHHHHHHHHHTTCS-EEEEEEEECTTSCEEECSSSBCTTT
T ss_pred cchHHHHHHHHHcCCC-EEEeeeEECCCCcEEEeCCChHHhh
Confidence 5899999999975331 11322 467889999999884
No 119
>3d4u_A Tafia, carboxypeptidase B2; protease-inhibitor complex, glycoprotein, hydrolase, metal-binding, metalloprotease, protease, secret zymogen; 1.70A {Bos taurus} PDB: 3lms_A
Probab=20.58 E-value=56 Score=30.10 Aligned_cols=69 Identities=10% Similarity=0.013 Sum_probs=41.8
Q ss_pred hhhHHHHhh-ccccceeEeeeeccCCCCccccccCCCCCCCchHHHHHHHHHHHhhccccCCcc--hHHHHHHHHHHHHh
Q psy11447 196 LGTSLEAFQ-DFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDY--TLESIRASIQDLTT 272 (360)
Q Consensus 196 L~rvMEaf~-g~e~k~~ydivGHSGd~~~i~lV~~~~~Pk~~keRl~vl~~M~aH~Qfc~sGD~--Tlea~~~ai~~~a~ 272 (360)
+...|+.+. .+.+..++..+|.|-+|..|..++.++.|...|-. ..-+-.+=||- +.+++..-++.|..
T Consensus 15 i~~~l~~l~~~~p~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~p~--------v~i~agiHg~E~~g~~~~~~l~~~L~~ 86 (309)
T 3d4u_A 15 IYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRAKNA--------MWIDCGIHAREWISPAFCLWFVGSVTY 86 (309)
T ss_dssp HHHHHHHHHHHSTTTEEEEEEEECTTCCEEEEEEECCC-----CE--------EEEECCSSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCceEEEeccccCCCCeeEEEEeCCCCCCCCce--------EEEEeccCCcchhhHHHHHHHHHHHHH
Confidence 455556554 36778999999999999999999998744322211 11222223343 34666666777764
No 120
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=20.33 E-value=71 Score=24.13 Aligned_cols=106 Identities=7% Similarity=0.044 Sum_probs=54.0
Q ss_pred eccCCCCccccccCCCCCCCchHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHh-hcccCCCeEEEEEecCCccccC
Q psy11447 216 GHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTT-ECAQHDDSILIVLSDANLDRYG 294 (360)
Q Consensus 216 GHSGd~~~i~lV~~~~~Pk~~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~-~~~daDe~fVivlSDANL~RYg 294 (360)
+|+...+....+-.+. +....+.++.+.....|.. .+......|++.+.+ . . +-++|.|.++. +
T Consensus 8 ~~~~~~~~~~ilivdd----~~~~~~~l~~~L~~~g~~v---~~~~~~~~al~~l~~~~--~----~dlvilD~~l~--~ 72 (138)
T 2b4a_A 8 HHHHHMQPFRVTLVED----EPSHATLIQYHLNQLGAEV---TVHPSGSAFFQHRSQLS--T----CDLLIVSDQLV--D 72 (138)
T ss_dssp ------CCCEEEEECS----CHHHHHHHHHHHHHTTCEE---EEESSHHHHHHTGGGGG--S----CSEEEEETTCT--T
T ss_pred hccCCCCCCeEEEECC----CHHHHHHHHHHHHHcCCEE---EEeCCHHHHHHHHHhCC--C----CCEEEEeCCCC--C
Confidence 3444444444333332 4455566666555433321 122233455555544 3 3 34677799887 4
Q ss_pred CChhHHHHHHhcCcccccEEEEEec-CchHHHHHHHhhCCCCceEEecC
Q psy11447 295 IAPREMGEALNAEAASVRAYAIFIG-SLGDQAKRLTQELPAGRGFVCMD 342 (360)
Q Consensus 295 I~p~~l~~~l~~~~p~V~a~~IfIg-slgdqA~~l~~~Lp~Gr~fv~~d 342 (360)
.+.-++.+.|....| +.-+|++. +.++... .+.+ ...|+...
T Consensus 73 ~~g~~~~~~l~~~~~--~~~ii~ls~~~~~~~~--~~~~--~~~~l~KP 115 (138)
T 2b4a_A 73 LSIFSLLDIVKEQTK--QPSVLILTTGRHELIE--SSEH--NLSYLQKP 115 (138)
T ss_dssp SCHHHHHHHHTTSSS--CCEEEEEESCC--CCC--CSSS--CEEEEESS
T ss_pred CCHHHHHHHHHhhCC--CCCEEEEECCCCCHHH--HHHH--HHheeeCC
Confidence 666677777776434 45678887 6555433 4555 56677663
No 121
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=20.06 E-value=2.8e+02 Score=20.66 Aligned_cols=106 Identities=15% Similarity=0.256 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccc--c-
Q psy11447 236 NKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASV--R- 312 (360)
Q Consensus 236 ~keRl~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V--~- 312 (360)
+....+.++.+.....|-.. +......|++.+... . | +|+.|-++. +++--++.+.|....+.. .
T Consensus 16 ~~~~~~~l~~~L~~~g~~v~---~~~~~~~a~~~~~~~--~-d----lvllD~~lp--~~~g~~~~~~l~~~~~~~~~~~ 83 (136)
T 1dcf_A 16 NGVSRMVTKGLLVHLGCEVT---TVSSNEECLRVVSHE--H-K----VVFMDVCMP--GVENYQIALRIHEKFTKQRHQR 83 (136)
T ss_dssp CHHHHHHHHHHHHHTTCEEE---EESSHHHHHHHCCTT--C-S----EEEEECCSS--TTTTTHHHHHHHHHHC-CCSCC
T ss_pred CHHHHHHHHHHHHHcCCeEE---EeCCHHHHHHHHhcc--C-C----EEEEeCCCC--CCcHHHHHHHHHHhhhhccCCC
Confidence 34455666666654333211 122234455544332 2 3 777898885 344456666665321322 1
Q ss_pred EEEEEecCchHHHHHHHhhCCCC-ceEEecC--CCchHHHHHHHH
Q psy11447 313 AYAIFIGSLGDQAKRLTQELPAG-RGFVCMD--LTEIPQILQQIF 354 (360)
Q Consensus 313 a~~IfIgslgdqA~~l~~~Lp~G-r~fv~~d--t~~lP~il~qIf 354 (360)
..+|++++.++.... .+.+-+| ..|+..- ..+|-..++.+.
T Consensus 84 ~~ii~~s~~~~~~~~-~~~~~~ga~~~l~KP~~~~~L~~~l~~~~ 127 (136)
T 1dcf_A 84 PLLVALSGNTDKSTK-EKCMSFGLDGVLLKPVSLDNIRDVLSDLL 127 (136)
T ss_dssp CEEEEEESCCSHHHH-HHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCHHHH-HHHHHcCCCeEEECCCCHHHHHHHHHHHh
Confidence 246777765554432 3333344 4677763 334444454443
Done!