RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11447
         (360 letters)



>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 202

 Score = 31.0 bits (69), Expect = 0.13
 Identities = 18/156 (11%), Positives = 61/156 (39%), Gaps = 8/156 (5%)

Query: 200 LEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYT 259
           +E  +   + + + ++ +   +H+   +     P + ++    +K   +          T
Sbjct: 42  MERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVA------ST 95

Query: 260 LESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIG 319
            E ++ ++  + ++  + + S + +L  A+ +   ++   +      +   V    + IG
Sbjct: 96  SEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIG 155

Query: 320 SLGDQA--KRLTQELPAGRGFVCMDLTEIPQILQQI 353
              +    + + ++ P  + FV   + E+ Q   +I
Sbjct: 156 PHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEI 191


>d2c1ca1 c.56.5.1 (A:7-309) Carboxypeptidase B {Corn earworm
           (Helicoverpa zea) [TaxId: 7113]}
          Length = 312

 Score = 27.1 bits (59), Expect = 3.5
 Identities = 14/83 (16%), Positives = 20/83 (24%)

Query: 26  YSLPVQNQQNDQHRDLFSVHVIDNPSPESELALLSSYGPDVPRDTLIRLVRAFGEFRELS 85
             LPV N    ++            S  +        G D  R+               S
Sbjct: 99  ILLPVVNPDGYKYTFTNERFWRKTRSTNNNPLSQICRGADGNRNFDFVWNSIGTSNSPCS 158

Query: 86  DKSLLPYPYSTREAVHIVKHLQE 108
           D       +S  E   +   L E
Sbjct: 159 DIYAGTSAFSEVETRVVRDILHE 181


>d1i5pa2 b.77.2.1 (A:264-472) delta-Endotoxin (insectocide), middle
           domain {Bacillus thuringiensis subsp. kurstaki, CRY2AA
           [TaxId: 29339]}
          Length = 209

 Score = 26.8 bits (59), Expect = 3.7
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 139 EAFQDFDQRIRLDIIGHSGETHSIP--FVTSIKNLPRDNKQRLEVIKVHHNNLRNTGSDL 196
           E+FQ     +R       G ++  P  F+ +I  +P   +       +H+N +RN  S  
Sbjct: 133 ESFQTTLS-LRCGAFSARGNSNYFPDYFIRNISGVPLVIRNEDLTRPLHYNQIRNIESPS 191

Query: 197 GTSLEA 202
           GT   A
Sbjct: 192 GTPGGA 197


>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid
           phosphoribosyltransferase (Nicotinate-nucleotide
           pyrophosphorylase, NadC), C-terminal domain {Thermotoga
           maritima [TaxId: 2336]}
          Length = 170

 Score = 25.8 bits (56), Expect = 6.7
 Identities = 9/40 (22%), Positives = 16/40 (40%)

Query: 226 FVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYTLESIRA 265
            +  N  P + K     IK ++ +     SG  T E++  
Sbjct: 102 VMLDNLSPEEVKDISRRIKDINPNVIVEVSGGITEENVSL 141


>d2a1ba1 d.58.56.1 (A:2-102) Carboxysome shell protein CcmK2
          {Synechocystis sp. PCC 6803 [TaxId: 1148]}
          Length = 101

 Score = 25.1 bits (55), Expect = 7.1
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 40 DLFSVHVIDNPSPESELALLSSYGPDV 66
          ++ S H+I  P    E  L   Y  +V
Sbjct: 70 EVLSTHIIARPHENLEYVLPIRYTEEV 96


>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 181

 Score = 25.7 bits (55), Expect = 8.6
 Identities = 20/158 (12%), Positives = 42/158 (26%), Gaps = 10/158 (6%)

Query: 200 LEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYT 259
            E F   + R+S  +                 + +          +            Y 
Sbjct: 33  AERFVSPEMRLSFIVFSSQATIILPLTGDRGKISK---------GLEDLKRVSPVGETYI 83

Query: 260 LESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIG 319
            E ++ + + +         SI+I L+D  LD   +      EA  + +     Y + + 
Sbjct: 84  HEGLKLANEQIQKAGGLKTSSIIIALTDGKLDG-LVPSYAEKEAKISRSLGASVYCVGVL 142

Query: 320 SLGDQAKRLTQELPAGRGFVCMDLTEIPQILQQIFSAS 357
                      +       V      +  I+  I + S
Sbjct: 143 DFEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQS 180


>d2a10a1 d.58.56.1 (A:4-107) Carboxysome shell protein CcmK4
          {Synechocystis sp. PCC 6803 [TaxId: 1148]}
          Length = 104

 Score = 24.7 bits (54), Expect = 9.4
 Identities = 5/26 (19%), Positives = 10/26 (38%)

Query: 41 LFSVHVIDNPSPESELALLSSYGPDV 66
          + +  +I  P       L   + P+V
Sbjct: 71 VKTWVIIPRPHENVVAVLPIDFSPEV 96


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.383 

Gapped
Lambda     K      H
   0.267   0.0670    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,276,835
Number of extensions: 58623
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 12
Length of query: 360
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 274
Effective length of database: 1,226,816
Effective search space: 336147584
Effective search space used: 336147584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)