BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1145
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 18/142 (12%)
Query: 4 NFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDES---- 59
NF L GE G Y+N ++ + I G F GD T G+S++ + + PDE+
Sbjct: 37 NFVALATGE-KGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERF--PDENFKLK 93
Query: 60 HLGARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAI-S 115
H G G V M K + GSQF I G +FG+V+ G+E + + S
Sbjct: 94 HYGP--GWVSMANAGKDTN-----GSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVES 146
Query: 116 TYSNAQGQPTERFYISNCGKWE 137
T ++++ +P + I++CGK E
Sbjct: 147 TKTDSRDKPLKDVIIADCGKIE 168
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 18/142 (12%)
Query: 4 NFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDES---- 59
NF L GE G Y+N ++ + I G F GD T G+S++ + + PDE+
Sbjct: 47 NFVALATGE-KGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERF--PDENFKLK 103
Query: 60 HLGARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAI-S 115
H G G V M K + GSQF I G +FG+V+ G+E + + S
Sbjct: 104 HYGP--GWVSMANAGKDTN-----GSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVES 156
Query: 116 TYSNAQGQPTERFYISNCGKWE 137
T ++++ +P + I++CGK E
Sbjct: 157 TKTDSRDKPLKDVIIADCGKIE 178
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
Query: 4 NFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDES---- 59
NF L GE G Y++ ++ + I G F GD T G+S++ + + PDE+
Sbjct: 44 NFVALATGE-KGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERF--PDENFKLK 100
Query: 60 HLGARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAI-S 115
H G G V M K + GSQF I G +FG+V+ G+E + + +
Sbjct: 101 HYGP--GWVSMANAGKDTN-----GSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVET 153
Query: 116 TYSNAQGQPTERFYISNCGKWE 137
T ++ + +P + I++CGK E
Sbjct: 154 TKTDGRDKPLKDVTIADCGKIE 175
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
Query: 4 NFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDES---- 59
NF L GE G Y++ ++ + I G F GD T G+S++ + + PDE+
Sbjct: 44 NFVALATGE-KGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERF--PDENFKLK 100
Query: 60 HLGARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAI-S 115
H G G V M K + GSQF I G +FG+V+ G+E + + +
Sbjct: 101 HYGP--GWVSMANAGKDTN-----GSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVET 153
Query: 116 TYSNAQGQPTERFYISNCGKWE 137
T ++ + +P + I++CGK E
Sbjct: 154 TKTDGRDKPLKDVTIADCGKIE 175
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 9/137 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L GE G Y NC ++ G F GD T G+S++ +++ D+ +
Sbjct: 40 AENFRALCTGE-RGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKF---DDENF 95
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
R G+ + + N GSQF I G +FG+V+ G + + +
Sbjct: 96 QLRHEGFGVLSMANSGPNTN--GSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVG 153
Query: 119 NAQGQPTERFYISNCGK 135
+ G+ E IS CG+
Sbjct: 154 SKSGKVKEPVIISRCGE 170
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L+ GE G Y+ ++ G+F + + T G+S++ +++ DE+ +
Sbjct: 33 AENFRALSTGE-KGFGYKGSCFHRIIPGFMCQGGNFTHCNGTGGKSIYGEKF--EDENFI 89
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
G G+ + N GSQF I + G +FG+V G+ ++A+ +
Sbjct: 90 LKHTGP-GILSMANAGPNTN--GSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG 146
Query: 119 NAQGQPTERFYISNCGKWE 137
+ G+ +++ I++CG+ E
Sbjct: 147 SRNGKTSKKITIADCGQLE 165
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDES-- 59
A NF L GE G Y+ ++ G F + T G+S++ + PDE+
Sbjct: 32 AENFRALCTGE-KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRF--PDENFT 88
Query: 60 --HLGARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAI 114
H+G G + M + GSQF I G +FG VI G++ + I
Sbjct: 89 LKHVGP--GVLSMANAGPNTN-----GSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKI 141
Query: 115 STYSNAQGQPTERFYISNCGK 135
++ + G+ +++ I++CG+
Sbjct: 142 ESFGSKSGRTSKKIVITDCGQ 162
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDES-- 59
A NF L GE G Y+ ++ G F + T G+S++ + PDE+
Sbjct: 33 AENFRALCTGE-KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRF--PDENFT 89
Query: 60 --HLGARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAI 114
H+G G + M + GSQF I G +FG VI G++ + I
Sbjct: 90 LKHVGP--GVLSMANAGPNTN-----GSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKI 142
Query: 115 STYSNAQGQPTERFYISNCGK 135
++ + G+ +++ I++CG+
Sbjct: 143 ESFGSKSGRTSKKIVITDCGQ 163
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L+ GE G Y+ ++ G+F + + T G+S++ +++ DE+ +
Sbjct: 33 AENFRALSTGE-KGFGYKGSCFHRIIPGFMCQGGNFTHHNGTGGKSIYGEKF--EDENFI 89
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
G G+ + N GSQF I + G +FG+V G+ ++A+ +
Sbjct: 90 LKHTGP-GILSMANAGPNTN--GSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG 146
Query: 119 NAQGQPTERFYISNCGKWE 137
+ G+ +++ I++CG+ E
Sbjct: 147 SRNGKTSKKITIADCGQLE 165
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDES-- 59
A NF L GE G Y+ ++ G F + T G+S++ + PDE+
Sbjct: 33 AENFRALCTGE-KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRF--PDENFT 89
Query: 60 --HLGARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAI 114
H+G G + M + GSQF I G +FG VI G++ + I
Sbjct: 90 LKHVGP--GVLSMANAGPNTN-----GSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKI 142
Query: 115 STYSNAQGQPTERFYISNCGK 135
++ + G+ +++ I++CG+
Sbjct: 143 ESFGSKSGRTSKKIVITDCGQ 163
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDES-- 59
A NF L GE G Y+ ++ G F + T G+S++ + PDE+
Sbjct: 34 AENFRALCTGE-KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRF--PDENFT 90
Query: 60 --HLGARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAI 114
H+G G + M + GSQF I G +FG VI G++ + I
Sbjct: 91 LKHVGP--GVLSMANAGPNTN-----GSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKI 143
Query: 115 STYSNAQGQPTERFYISNCGK 135
++ + G+ +++ I++CG+
Sbjct: 144 ESFGSKSGRTSKKIVITDCGQ 164
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L+ GE G Y+ ++ G F + T G+S++ +++ DE+ +
Sbjct: 33 AENFRALSTGE-KGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF--EDENFI 89
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
G G+ + N GSQF I K G +FG+V G+ ++A+ +
Sbjct: 90 LKHTGP-GILSMANAGPNTN--GSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAMERFG 146
Query: 119 NAQGQPTERFYISNCGKWE 137
+ G+ +++ I++CG+ E
Sbjct: 147 SRNGKTSKKITIADCGQLE 165
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 9/136 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L GE G Y ++ + G F G+ T G+S++ ++ + +
Sbjct: 31 AANFRALCTGE-KGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKF---ADENF 86
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
+ G+ + N GSQF I G +FG+VI G+ + AI
Sbjct: 87 QLKHNKPGLLSMANAGPNTN--GSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEG 144
Query: 119 NAQGQPTERFYISNCG 134
+ G+P R I+ CG
Sbjct: 145 SGSGKPRSRIEIAKCG 160
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L+ GE G Y+ ++ G F + T G+S++ +++ DE+ +
Sbjct: 37 AENFRALSTGE-KGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF--EDENFI 93
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
G G+ + N GSQF I K G +FG+V G+ ++A+ +
Sbjct: 94 LKHTGP-GILSMANAGPNTN--GSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAMERFG 150
Query: 119 NAQGQPTERFYISNCGKWE 137
+ G+ +++ I++CG+ E
Sbjct: 151 SRNGKTSKKITIADCGQLE 169
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 2 ATNFELLTIGEF------PGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFR 55
A NF L GE L ++ ++ I G F G+ T G S++ +++
Sbjct: 33 AGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKF-- 90
Query: 56 PDESHLGARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYID 112
PDE+ G G+ + N GSQF + + G +FG+V+ GL+ +
Sbjct: 91 PDENFKEKHTGP-GVLSMANAGPNTN--GSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVK 147
Query: 113 AISTYSNAQGQPTERFYISNCGKWE 137
A+ + + G+P + I++CG+ +
Sbjct: 148 AVESNGSQSGKPVKDCMIADCGQLK 172
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 11/143 (7%)
Query: 2 ATNFELLTIGEF------PGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFR 55
A NF L GE L Y++ ++ I G F G+ T G S++ FR
Sbjct: 37 AENFRALCTGEKGKGRSGKPLHYKSSVFHRVIPNFMIQGGDFTRGNGTGGESIY-GTTFR 95
Query: 56 PDESHLGARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYID 112
DES G G+ + + GSQF I G +FG+VI GL+ +
Sbjct: 96 -DESFSGKAGRHTGLGCLSMANAGPNTNGSQFFICTAATPWLDGKHVVFGRVIDGLDVVK 154
Query: 113 AISTYSNAQGQPTERFYISNCGK 135
+ ++ G+ R +S+CG+
Sbjct: 155 KVERLGSSSGKTRSRIVVSDCGE 177
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L+ GE G Y+ ++ G F + T G+S++ +++ DE+ +
Sbjct: 32 AENFRALSTGE-KGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF--EDENFI 88
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
G G+ + N GSQF I K G +FG V G+ ++A+ +
Sbjct: 89 LKHTGP-GILSMANAGPNTN--GSQFFICTAKTKWLDGKHVVFGAVKEGMNIVEAMERFG 145
Query: 119 NAQGQPTERFYISNCGKWE 137
+ G+ +++ I++CG+ E
Sbjct: 146 SRNGKTSKKITIADCGQLE 164
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L+ GE G Y+ ++ G F + T G+S++ +++ DE+ +
Sbjct: 33 AENFRALSTGE-KGFGYKGSCFHKIIPGFMCQGGDFTRHNGTGGKSIYGEKF--EDENFI 89
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
G G+ + N GSQF I + G +FG+V G+ ++A+ +
Sbjct: 90 LKHTGP-GILSMANAGPNTN--GSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG 146
Query: 119 NAQGQPTERFYISNCGKWE 137
+ G+ +++ I++CG+ E
Sbjct: 147 SRNGKTSKKITIADCGQLE 165
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L+ GE G Y+ ++ G F + T G+S++ +++ DE+ +
Sbjct: 33 AENFRALSTGE-KGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF--EDENFI 89
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
G G+ + N GSQF I + G +FG+V G+ ++A+ +
Sbjct: 90 LKHTGP-GILTMANAGPNTN--GSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG 146
Query: 119 NAQGQPTERFYISNCGKWE 137
+ G+ +++ I++CG+ E
Sbjct: 147 SRNGKTSKKITIADCGQLE 165
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L+ GE G Y+ ++ G F + T G+S++ +++ DE+ +
Sbjct: 33 AENFRALSTGE-KGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF--EDENFI 89
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
G G+ + N GSQF I + G +FG+V G+ ++A+ +
Sbjct: 90 LKHTGP-GILSMANAGPNTN--GSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG 146
Query: 119 NAQGQPTERFYISNCGKWE 137
+ G+ +++ I++CG+ E
Sbjct: 147 SRNGKTSKKITIADCGQLE 165
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L+ GE G Y+ ++ G F + T G+S++ +++ DE+ +
Sbjct: 33 AENFRALSTGE-KGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF--EDENFI 89
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
G G+ + N GSQF I + G +FG+V G+ ++A+ +
Sbjct: 90 LKHTGP-GILSMANAGPNTN--GSQFFICTAKTEWLDGXHVVFGKVKEGMNIVEAMERFG 146
Query: 119 NAQGQPTERFYISNCGKWE 137
+ G+ +++ I++CG+ E
Sbjct: 147 SRNGKTSKKITIADCGQLE 165
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L+ GE G Y+ ++ G F + + T G+S++ +++ DE+ +
Sbjct: 32 AENFRALSTGE-KGFGYKGSCFHRIIPGFMCQGGDFTHHNGTGGKSIYGEKF--EDENFI 88
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
G G+ + N GSQF I + G +FG+V G+ ++A+ +
Sbjct: 89 LKHTGP-GILSMANAGPNTN--GSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMKRFG 145
Query: 119 NAQGQPTERFYISNCGK 135
+ G+ +++ I++CG+
Sbjct: 146 SRNGKTSKKITIADCGQ 162
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L+ GE G Y+ ++ G F + T G+S++ +++ DE+ +
Sbjct: 33 AENFRALSTGE-KGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF--EDENFI 89
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
G G+ + N GSQF I + G +FG+V G+ ++A+ +
Sbjct: 90 LKHTGP-GILSMANAGPNTN--GSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG 146
Query: 119 NAQGQPTERFYISNCGKWE 137
+ G+ +++ I++CG+ E
Sbjct: 147 SRNGKTSKKITIADCGQLE 165
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L+ GE G Y+ ++ G F + T G+S++ +++ DE+ +
Sbjct: 32 AENFRALSTGE-KGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF--EDENFI 88
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
G G+ + N GSQF I + G +FG+V G+ ++A+ +
Sbjct: 89 LKHTGP-GILSMANAGPNTN--GSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG 145
Query: 119 NAQGQPTERFYISNCGKWE 137
+ G+ +++ I++CG+ E
Sbjct: 146 SRNGKTSKKITIADCGQLE 164
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L+ GE G Y+ ++ G F + T G+S++ +++ DE+ +
Sbjct: 52 AENFRALSTGE-KGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF--EDENFI 108
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
G G+ + N GSQF I + G +FG+V G+ ++A+ +
Sbjct: 109 LKHTGP-GILSMANAGPNTN--GSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG 165
Query: 119 NAQGQPTERFYISNCGKWE 137
+ G+ +++ I++CG+ E
Sbjct: 166 SRNGKTSKKITIADCGQLE 184
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L+ GE G Y+ ++ G F + T G+S++ +++ DE+ +
Sbjct: 41 AENFRALSTGE-KGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF--EDENFI 97
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
G G+ + N GSQF I + G +FG+V G+ ++A+ +
Sbjct: 98 LKHTGP-GILSMANAGPNTN--GSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG 154
Query: 119 NAQGQPTERFYISNCGKWE 137
+ G+ +++ I++CG+ E
Sbjct: 155 SRNGKTSKKITIADCGQLE 173
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 62/138 (44%), Gaps = 9/138 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L E G ++ + ++ G F + T G+S++ +++ D+ +
Sbjct: 33 AENFRCLCTHE-KGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKF---DDENF 88
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
+ G+ + + N GSQF + + G +FG+V GL+ + I
Sbjct: 89 ILKHTGPGLLSMANSGPNTN--GSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQG 146
Query: 119 NAQGQPTERFYISNCGKW 136
+ G+P ++ I++CG++
Sbjct: 147 SKDGKPKQKVIIADCGEY 164
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 62/138 (44%), Gaps = 9/138 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L E G ++ + ++ G F + T G+S++ +++ D+ +
Sbjct: 41 AENFRCLCTHE-KGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKF---DDENF 96
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
+ G+ + + N GSQF + + G +FG+V GL+ + I
Sbjct: 97 ILKHTGPGLLSMANSGPNTN--GSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQG 154
Query: 119 NAQGQPTERFYISNCGKW 136
+ G+P ++ I++CG++
Sbjct: 155 SKDGKPKQKVIIADCGEY 172
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 9/138 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L E G ++ + ++ G F + T G+S++ +++ D+ +
Sbjct: 42 AENFRCLCTHE-KGFGFKGSSFHRIIPQFXCQGGDFTNHNGTGGKSIYGKKF---DDENF 97
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
+ G+ + N GSQF + + G +FG+V GL+ + I
Sbjct: 98 ILKHTGPGLLSXANSGPNTN--GSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQG 155
Query: 119 NAQGQPTERFYISNCGKW 136
+ G+P ++ I++CG++
Sbjct: 156 SKDGKPKQKVIIADCGEY 173
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L+ GE G Y+ ++ G F + T G+S++ +++ DE+ +
Sbjct: 33 AENFRALSTGE-KGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF--EDENFI 89
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
G G+ + N GSQF I + G +FG+V G+ ++A+ +
Sbjct: 90 LKHTGP-GILSMANAGPNTN--GSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG 146
Query: 119 NAQGQPTERFYISNCGK 135
+ G+ +++ I++CG+
Sbjct: 147 SRNGKTSKKITIADCGQ 163
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L+ GE G Y+ ++ G F + T G+S++ +++ DE+ +
Sbjct: 32 AENFRALSTGE-KGFGYKGSCFHRIIPGFXCQGGDFTRHNGTGGKSIYGEKF--EDENFI 88
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
G G+ N GSQF I + G +FG+V G ++A +
Sbjct: 89 LKHTGP-GILSXANAGPNTN--GSQFFICTAKTEWLDGKHVVFGKVKEGXNIVEAXERFG 145
Query: 119 NAQGQPTERFYISNCGKWE 137
+ G+ +++ I++CG+ E
Sbjct: 146 SRNGKTSKKITIADCGQLE 164
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 9/137 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L GE G ++N ++ G D T G+S++ ++ ++ +
Sbjct: 36 AENFRALCTGE-KGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKF---EDENF 91
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFT---GIFGQVIYGLEYIDAISTYS 118
+ G+ + +N SQF I L + +FG V G++ + I ++
Sbjct: 92 DVKHTGPGLLSMANQGQNTN--NSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFG 149
Query: 119 NAQGQPTERFYISNCGK 135
+ +G R I+ CG+
Sbjct: 150 SPKGSVCRRITITECGQ 166
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 9/136 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L G+ G Y++ ++ + G F + T G+S++ +++ DE+
Sbjct: 33 AKNFRELATGQH-GFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKF--ADEN-F 88
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
+ G+ + N GSQF I G +FG+VI GL+ + +
Sbjct: 89 QVKHTKPGLLSMANAGANTN--GSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKG 146
Query: 119 NAQGQPTERFYISNCG 134
+A G+ I++CG
Sbjct: 147 SASGKTNATIKITDCG 162
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 9/136 (6%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L G+ G Y++ ++ + G F + T G+S++ +++ DE+
Sbjct: 32 AKNFRELATGQH-GFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKF--ADEN-F 87
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYS 118
+ G+ + N GSQF I G +FG+VI GL+ + +
Sbjct: 88 QVKHTKPGLLSMANAGANTN--GSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKG 145
Query: 119 NAQGQPTERFYISNCG 134
+A G+ I++CG
Sbjct: 146 SASGKTNATIKITDCG 161
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 4 NFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGA 63
NF L GE G Y++ ++ Q I G F D T G+S++ E F + ++
Sbjct: 43 NFRQLCTGEH-GFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIY-GEKFADENLNVKH 100
Query: 64 RRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAI-STYSN 119
GA+ M + GSQF I G +FG+V+ G++ + I T +N
Sbjct: 101 FVGALSMANAGPNTN-----GSQFFITTAPTPWLDGAHVVFGKVLDGMDVVLRIEKTKTN 155
Query: 120 AQGQPTERFYISNCGK 135
+ +P + I G+
Sbjct: 156 SHDRPVKPVKIVASGE 171
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 4 NFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGA 63
NF L GE G Y++ ++ Q I G F D T G+S++ E F + ++
Sbjct: 43 NFRQLCTGEH-GFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIY-GEKFADENLNVKH 100
Query: 64 RRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAI-STYSN 119
GA+ M + GSQF I G +FG+V+ G++ + I T +N
Sbjct: 101 FVGALSMANAGPNTN-----GSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTN 155
Query: 120 AQGQPTERFYISNCGK 135
+ +P + I G+
Sbjct: 156 SHDRPVKPVKIVASGE 171
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 21/143 (14%)
Query: 2 ATNFELLTIGEFP-GLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDES- 59
A NF T+ E P G Y+ ++ + G + + T GRS++ +++ PDE+
Sbjct: 57 AKNFR--TLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKF--PDENF 112
Query: 60 ---HLGARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDA 113
H + G + M + GSQF I L + +FG+V+ G++ +
Sbjct: 113 ELKH--TKEGILSMANCGAHTN-----GSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHK 165
Query: 114 ISTYSNAQGQPTE--RFYISNCG 134
I+ Y + GQ + R I +CG
Sbjct: 166 IAKYGSESGQVKKGYRIEIRDCG 188
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 35 GSFRYGDKTEGRSVFVQEYFRPDESHLGARRGAVGMRRIKKTSENKGLVGSQFRIILNHQ 94
G F GD T G S++ + FR DE+ + A + + N GSQF I
Sbjct: 88 GDFTRGDGTGGESIYGSK-FR-DENFV-YTHDAPFLLSMANAGPNTN--GSQFFITTVPC 142
Query: 95 KQFTG---IFGQVIYGLEYIDAISTYSNAQGQPTERFYISNCG 134
G +FG+V+ G+E + +I + G+PT+ I+ G
Sbjct: 143 PWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASG 185
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 15/144 (10%)
Query: 2 ATNFELLTIGEF-------PGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYF 54
A NF L GE L ++ C ++ + I G F + T G S++ +++
Sbjct: 45 AENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKF- 103
Query: 55 RPDESHLGARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYI 111
++ + + G+ + N GSQF I G +FGQVI G+
Sbjct: 104 --EDENFHYKHDKEGLLSMANAGSNTN--GSQFFITTVPTPHLDGKHVVFGQVIKGMGVA 159
Query: 112 DAISTYSNAQGQPTERFYISNCGK 135
+ +P + I+ CG+
Sbjct: 160 KILENVEVKGEKPAKLCVIAECGE 183
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 13/141 (9%)
Query: 4 NFELLTIGEFPG-----LSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDE 58
NF L GE G L Y+N ++ G G+ + G S++ + + +
Sbjct: 35 NFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSF---TD 91
Query: 59 SHLGARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAIS 115
+ + G+ + N SQF I L G +FG+VI G+ + +
Sbjct: 92 ENFNMKHDQPGLLSMANAGPNTN--SSQFLITLVPCPWLDGKHVVFGKVIEGMNVVREME 149
Query: 116 TYSNAQGQPTERFYISNCGKW 136
G I++CG+W
Sbjct: 150 KEGAKSGYVKRSVVITDCGEW 170
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 23 LSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGARRGAVGMRRIKKTSENKGL 82
+S L Q E ++ + +T VFVQ+ H A+ G + +RR+KK+ K
Sbjct: 266 MSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLA 325
Query: 83 VGSQFRIILN 92
+ +I+ N
Sbjct: 326 KATGAKIVTN 335
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 23 LSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGARRGAVGMRRIKKTSENKGL 82
+S L Q E ++ + +T VFVQ+ H A+ G + +RR+KK+ K
Sbjct: 266 MSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLA 325
Query: 83 VGSQFRIILN 92
+ +I+ N
Sbjct: 326 KATGAKIVTN 335
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 23 LSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGARRGAVGMRRIKKTSENKGL 82
+S L Q E ++ + +T VFVQ+ H A+ G + +RR+KK+ K
Sbjct: 266 MSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLA 325
Query: 83 VGSQFRIILN 92
+ +I+ N
Sbjct: 326 KATGAKIVTN 335
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 12/138 (8%)
Query: 2 ATNFELLTIGEFP-GLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESH 60
ATNF + + + P G Y ++ I G F GD T GRS++ +++ DE+
Sbjct: 36 ATNF--IELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKF--ADENF 91
Query: 61 LGARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTY 117
GA + ++ GSQF I G +FG+++ G++ + I
Sbjct: 92 KLKHYGAGWLSMANAGADTN---GSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQT 148
Query: 118 SNAQG-QPTERFYISNCG 134
G +P + I+ G
Sbjct: 149 EKLPGDRPKQDVIIAASG 166
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 4 NFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSV 48
N+ ++TI + PG ++ + W F+ I T R DK + +S+
Sbjct: 42 NYHVITI-DLPGHGEDQSSMDETWNFDYITTLLDRILDKYKDKSI 85
>pdb|3IZS|O Chain O, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3U5E|AA Chain a, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|AA Chain a, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|AA Chain a, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 149
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 55 RPDESHLGARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTGIFGQVIYGLEY 110
R H+ A +G +G R K +G+ G Q +N K G FG+V G+ Y
Sbjct: 9 RKHRGHVSAGKGRIGKHR--KHPGGRGMAGGQHHHRINMDKYHPGYFGKV--GMRY 60
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 14/129 (10%)
Query: 15 GLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGARRGAVGMRRIK 74
G YR ++ I G F G+ T GRS++ ++ + S ++G + M
Sbjct: 49 GEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAG 108
Query: 75 KTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEY-----IDAISTYSNAQGQPTE 126
+ GSQF I G +FG+V Y I+A+ + S + T
Sbjct: 109 PNTN-----GSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNT- 162
Query: 127 RFYISNCGK 135
R I NCG+
Sbjct: 163 RPKIVNCGE 171
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 13/140 (9%)
Query: 4 NFELLTIGEFPG-----LSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDE 58
NF L GE G L Y+N ++ G G+ + G S++ + + +
Sbjct: 35 NFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSF---TD 91
Query: 59 SHLGARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAIS 115
+ + G+ + N SQF I L G +FG+VI G+ + +
Sbjct: 92 ENFNMKHDQPGLLSMANAGPNTN--SSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREME 149
Query: 116 TYSNAQGQPTERFYISNCGK 135
G I++CG+
Sbjct: 150 KEGAKSGYVKRSVVITDCGE 169
>pdb|3T3N|A Chain A, Molecular Basis For The Recognition And Cleavage Of Rna
(Uuccgu) By The Bifunctional 5'-3' ExoENDORIBONUCLEASE
RNASE J
pdb|3T3O|A Chain A, Molecular Basis For The Recognition And Cleavage Of Rna
(Cugg) By The Bifunctional 5'-3' ExoENDORIBONUCLEASE
RNASE J
Length = 562
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 10 IGEFPGLSYRNCALSQLWQFESIITGSFRYGDKT--EGRSVF 49
IG PG + S + + +S+I + +YG K EGRS+
Sbjct: 236 IGRAPGRVFVTTFASHIHRIQSVIWAAEKYGRKVAMEGRSML 277
>pdb|3O58|Y Chain Y, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|Y Chain Y, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit
Length = 149
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 55 RPDESHLGARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTGIFGQVIYGLEY 110
R H+ A +G +G R K +G+ G + +N K G FG+V G+ Y
Sbjct: 9 RKHRGHVSAGKGRIGKHR--KHPGGRGMAGGEHHHRINMDKYHPGYFGKV--GMRY 60
>pdb|1S1I|V Chain V, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 148
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 55 RPDESHLGARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTGIFGQVIYGLEY 110
R H+ A +G +G R K +G+ G + +N K G FG+V G+ Y
Sbjct: 8 RKHRGHVSAGKGRIGKHR--KHPGGRGMAGGEHHHRINMDKYHPGYFGKV--GMRY 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,164,884
Number of Sequences: 62578
Number of extensions: 159464
Number of successful extensions: 360
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 73
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)