Query psy1145
Match_columns 138
No_of_seqs 105 out of 1108
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 18:46:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546|consensus 100.0 7.3E-50 1.6E-54 314.2 10.0 129 1-137 37-179 (372)
2 KOG0880|consensus 100.0 1.7E-49 3.6E-54 290.1 11.1 129 1-137 68-203 (217)
3 KOG0111|consensus 100.0 2.4E-46 5.3E-51 278.3 7.8 128 2-137 166-298 (298)
4 KOG0879|consensus 100.0 2.8E-44 6.1E-49 249.5 7.3 129 1-136 39-177 (177)
5 cd01926 cyclophilin_ABH_like c 100.0 5.1E-40 1.1E-44 238.7 14.1 125 2-134 30-164 (164)
6 PLN03149 peptidyl-prolyl isome 100.0 8.3E-40 1.8E-44 241.9 13.8 128 2-136 48-186 (186)
7 PTZ00060 cyclophilin; Provisio 100.0 1.5E-39 3.3E-44 240.0 14.8 129 2-137 45-183 (183)
8 KOG0881|consensus 100.0 1.4E-40 3E-45 228.6 6.4 122 1-134 33-161 (164)
9 PTZ00221 cyclophilin; Provisio 100.0 1.2E-38 2.6E-43 243.8 14.6 126 1-138 81-221 (249)
10 cd01923 cyclophilin_RING cyclo 100.0 2.6E-37 5.5E-42 223.6 14.7 124 2-137 24-154 (159)
11 cd01927 cyclophilin_WD40 cyclo 100.0 2.5E-37 5.5E-42 221.3 13.8 119 2-132 22-147 (148)
12 cd01928 Cyclophilin_PPIL3_like 100.0 4.1E-37 8.9E-42 221.3 13.9 120 2-133 25-151 (153)
13 cd01921 cyclophilin_RRM cyclop 100.0 6.3E-37 1.4E-41 222.9 14.6 127 1-137 21-160 (166)
14 COG0652 PpiB Peptidyl-prolyl c 100.0 6.8E-37 1.5E-41 220.0 13.3 122 2-136 24-157 (158)
15 cd01922 cyclophilin_SpCYP2_lik 100.0 7.9E-37 1.7E-41 218.3 13.2 118 2-131 22-145 (146)
16 KOG0865|consensus 100.0 7.1E-38 1.5E-42 226.7 6.5 128 1-136 32-167 (167)
17 KOG0883|consensus 100.0 3.3E-37 7.1E-42 244.3 8.9 123 2-136 302-431 (518)
18 PRK10791 peptidyl-prolyl cis-t 100.0 2.9E-34 6.3E-39 208.6 14.6 122 2-136 24-163 (164)
19 cd01925 cyclophilin_CeCYP16-li 100.0 3.6E-34 7.9E-39 209.3 14.2 124 2-137 30-161 (171)
20 PRK10903 peptidyl-prolyl cis-t 100.0 4.6E-34 1E-38 211.8 14.3 123 2-137 53-190 (190)
21 KOG0882|consensus 100.0 1.9E-34 4.1E-39 232.0 8.4 122 1-134 428-556 (558)
22 cd01920 cyclophilin_EcCYP_like 100.0 6.7E-33 1.5E-37 199.7 13.3 118 2-132 22-154 (155)
23 KOG0884|consensus 100.0 1.6E-33 3.5E-38 192.8 7.3 122 1-134 24-153 (161)
24 PF00160 Pro_isomerase: Cyclop 100.0 2.7E-32 5.8E-37 195.6 12.9 125 1-135 24-155 (155)
25 cd00317 cyclophilin cyclophili 100.0 1.2E-31 2.6E-36 190.6 13.7 118 2-132 22-146 (146)
26 cd01924 cyclophilin_TLP40_like 100.0 1.4E-30 3E-35 191.2 13.5 108 2-116 22-164 (176)
27 KOG0415|consensus 100.0 2.5E-30 5.5E-35 203.3 10.0 126 2-137 25-163 (479)
28 KOG0885|consensus 99.9 5.4E-28 1.2E-32 190.9 9.3 123 2-136 37-167 (439)
29 KOG0882|consensus 96.7 0.0022 4.9E-08 53.2 4.2 121 3-133 128-259 (558)
30 PRK00969 hypothetical protein; 94.0 0.064 1.4E-06 45.2 3.7 60 47-115 244-305 (508)
31 TIGR03268 methan_mark_3 putati 93.8 0.081 1.7E-06 44.6 3.8 60 47-115 241-302 (503)
32 COG4070 Predicted peptidyl-pro 91.0 0.13 2.8E-06 42.4 1.6 60 47-115 243-304 (512)
33 TIGR03268 methan_mark_3 putati 60.1 21 0.00045 30.5 5.0 47 65-116 112-164 (503)
34 PRK00969 hypothetical protein; 57.0 22 0.00048 30.4 4.7 46 65-116 116-167 (508)
35 PF08415 NRPS: Nonribosomal pe 39.3 30 0.00065 20.3 2.1 27 105-132 4-30 (58)
36 cd01271 Fe65_C Fe65 C-terminal 36.2 24 0.00051 24.6 1.5 29 106-134 18-50 (124)
37 PF12903 DUF3830: Protein of u 27.3 69 0.0015 22.9 2.7 18 99-116 113-130 (147)
No 1
>KOG0546|consensus
Probab=100.00 E-value=7.3e-50 Score=314.15 Aligned_cols=129 Identities=29% Similarity=0.407 Sum_probs=121.8
Q ss_pred ChhhhHHHhcCCCCC--------eeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccccCCCCCCCCCC--cceeee
Q psy1145 1 MATNFELLTIGEFPG--------LSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGAR--RGAVGM 70 (138)
Q Consensus 1 ~~~NF~~L~~g~~~g--------~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~~~~~h--~G~lsm 70 (138)
+||||++||+|+ +| ++|+|+.||||+++|||||||++.++|+||.||||+.| +||+|.++| +++|||
T Consensus 37 TaENFraLCtGE-~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGGeSIYG~~F--dDEnF~lKHdrpflLSM 113 (372)
T KOG0546|consen 37 TAENFRALCTGE-KGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGGESIYGEKF--DDENFELKHDRPFLLSM 113 (372)
T ss_pred hHHHHHHHhccc-cCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCccccccccc--ccccceeccCcchhhhh
Confidence 489999999999 65 58999999999999999999999999999999999988 999999998 799999
Q ss_pred eccccCCCCCCcceeeEEEEecC---CCCCCeEEEEEEcCHHHHHHHhcCCC-CCCCcccceEEeeeeEec
Q psy1145 71 RRIKKTSENKGLVGSQFRIILNH---QKQFTGIFGQVIYGLEYIDAISTYSN-AQGQPTERFYISNCGKWE 137 (138)
Q Consensus 71 ~~~~~~~~~~~~~~SqF~Itl~~---ld~~~~vfG~Vv~G~~vl~~i~~~~~-~~~~P~~~v~I~~cg~l~ 137 (138)
||.|| |+||||||||+.+ |||+|||||+||+|++||+.|+.+.+ .+.+|+.+|+|.+||+|.
T Consensus 114 AN~Gp-----NTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~ 179 (372)
T KOG0546|consen 114 ANRGP-----NTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPLADVVISDCGELV 179 (372)
T ss_pred hcCCC-----CCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCccceEeccccccc
Confidence 99997 8999999999985 99999999999999999999999997 445899999999999985
No 2
>KOG0880|consensus
Probab=100.00 E-value=1.7e-49 Score=290.05 Aligned_cols=129 Identities=29% Similarity=0.478 Sum_probs=122.9
Q ss_pred ChhhhHHHhc-CCCCCeeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccccCCCCCCCCCC--cceeeeeccccCC
Q psy1145 1 MATNFELLTI-GEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGAR--RGAVGMRRIKKTS 77 (138)
Q Consensus 1 ~~~NF~~L~~-g~~~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~~~~~h--~G~lsm~~~~~~~ 77 (138)
.|+||.+||+ +. ++++|.+++||||+|||||||||++.+++.|+.||||++| +|||+.++| +|.|||||.+|
T Consensus 68 TV~NF~~l~~~~~-~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~SIyG~~F--~DENf~LkH~rpG~lSMAn~Gp-- 142 (217)
T KOG0880|consen 68 TVENFRALATSGE-KGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKSIYGEKF--PDENFKLKHDRPGRLSMANAGP-- 142 (217)
T ss_pred HHHHHHHHHccCC-CCcccCCceeeeeecCceeecCccccCCCCCCeEeecCCC--CCccceeecCCCceEeeeccCC--
Confidence 4899999999 77 8999999999999999999999999999999999999998 999999998 79999999998
Q ss_pred CCCCcceeeEEEEec---CCCCCCeEEEEEEcCHHHHHHHhcCCC-CCCCcccceEEeeeeEec
Q psy1145 78 ENKGLVGSQFRIILN---HQKQFTGIFGQVIYGLEYIDAISTYSN-AQGQPTERFYISNCGKWE 137 (138)
Q Consensus 78 ~~~~~~~SqF~Itl~---~ld~~~~vfG~Vv~G~~vl~~i~~~~~-~~~~P~~~v~I~~cg~l~ 137 (138)
++||||||||+. ||||+|+|||||++|||+|.+|+.+.| .+++|.++++|.+||+|+
T Consensus 143 ---DtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~g~l~ 203 (217)
T KOG0880|consen 143 ---DTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIANCGELP 203 (217)
T ss_pred ---CCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEeecCccc
Confidence 899999999997 599999999999999999999999997 778999999999999875
No 3
>KOG0111|consensus
Probab=100.00 E-value=2.4e-46 Score=278.28 Aligned_cols=128 Identities=26% Similarity=0.470 Sum_probs=124.0
Q ss_pred hhhhHHHhcCCCCCeeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccccCCCCCCCCCC--cceeeeeccccCCCC
Q psy1145 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGAR--RGAVGMRRIKKTSEN 79 (138)
Q Consensus 2 ~~NF~~L~~g~~~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~~~~~h--~G~lsm~~~~~~~~~ 79 (138)
++||++||+|+ +|++|+|+.||||+|.||+||||+++++|+||.||||..| .||++.++| +|+|||||.++
T Consensus 166 aenfr~Lctge-~gfgykgssfhriip~fmcqggdftn~ngtggksiygkkf--ddenf~lkht~pgtlsmansga---- 238 (298)
T KOG0111|consen 166 AENFRCLCTGE-AGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKF--DDENFTLKHTMPGTLSMANSGA---- 238 (298)
T ss_pred hhhhhhhcccc-CccCccccchhhhhhhhhccCCccccCCCCCCcccccccc--cccceeeecCCCceeeccccCC----
Confidence 78999999999 9999999999999999999999999999999999999988 999999998 89999999998
Q ss_pred CCcceeeEEEEec---CCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCcccceEEeeeeEec
Q psy1145 80 KGLVGSQFRIILN---HQKQFTGIFGQVIYGLEYIDAISTYSNAQGQPTERFYISNCGKWE 137 (138)
Q Consensus 80 ~~~~~SqF~Itl~---~ld~~~~vfG~Vv~G~~vl~~i~~~~~~~~~P~~~v~I~~cg~l~ 137 (138)
|+||||||||+. |||++|+|||.|++||+||++++++++..++|.+.|+|.+||+++
T Consensus 239 -ntngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgkp~qkv~i~~cge~~ 298 (298)
T KOG0111|consen 239 -NTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGKPQQKVKIVECGEIE 298 (298)
T ss_pred -CCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCCcceEEEEEeccccC
Confidence 899999999997 599999999999999999999999999999999999999999974
No 4
>KOG0879|consensus
Probab=100.00 E-value=2.8e-44 Score=249.45 Aligned_cols=129 Identities=26% Similarity=0.408 Sum_probs=121.5
Q ss_pred ChhhhHHHhcCCC----CCeeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccccCCCCCCCCCC--cceeeeeccc
Q psy1145 1 MATNFELLTIGEF----PGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGAR--RGAVGMRRIK 74 (138)
Q Consensus 1 ~~~NF~~L~~g~~----~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~~~~~h--~G~lsm~~~~ 74 (138)
.+|||+++|+|+. ...+|+++.||||+++||||+||+-+++++|-.|||+.+| +||++.++| +|+|||||++
T Consensus 39 TAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy~~~F--~DENFtlkH~~PGlLSMANsG 116 (177)
T KOG0879|consen 39 TAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIYGSTF--PDENFTLKHDGPGLLSMANSG 116 (177)
T ss_pred hHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEEEEcCCCC--CCcceeeecCCCceeeccccC
Confidence 4799999999986 2368999999999999999999999999999999999987 999999998 8999999999
Q ss_pred cCCCCCCcceeeEEEEecC---CCCCCeEEEEEEcCHHHHHHHhcCCC-CCCCcccceEEeeeeEe
Q psy1145 75 KTSENKGLVGSQFRIILNH---QKQFTGIFGQVIYGLEYIDAISTYSN-AQGQPTERFYISNCGKW 136 (138)
Q Consensus 75 ~~~~~~~~~~SqF~Itl~~---ld~~~~vfG~Vv~G~~vl~~i~~~~~-~~~~P~~~v~I~~cg~l 136 (138)
+ ++||+|||||..+ ||++|+|||||++||.++++|+.+++ ++++|..+|+|+.||++
T Consensus 117 ~-----~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v~i~qCGem 177 (177)
T KOG0879|consen 117 K-----DTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPVVIVQCGEM 177 (177)
T ss_pred C-----CCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcEEEeecccC
Confidence 8 7999999999985 99999999999999999999999998 89999999999999985
No 5
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=5.1e-40 Score=238.71 Aligned_cols=125 Identities=28% Similarity=0.519 Sum_probs=113.4
Q ss_pred hhhhHHHhcCCCCC-----eeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccccCCCCCCCCCC--cceeeeeccc
Q psy1145 2 ATNFELLTIGEFPG-----LSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGAR--RGAVGMRRIK 74 (138)
Q Consensus 2 ~~NF~~L~~g~~~g-----~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~~~~~h--~G~lsm~~~~ 74 (138)
|+||++||++. ++ +.|+++.||||+|+++||+||+..+++.++.++|+..+ ++|.+.+.| +|+||||+.+
T Consensus 30 ~~nF~~L~~~~-~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g~~~--~~e~~~~~h~~~G~lsma~~~ 106 (164)
T cd01926 30 AENFRALCTGE-KGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYGEKF--PDENFKLKHTGPGLLSMANAG 106 (164)
T ss_pred HHHHHHHhccc-CCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcccCCcc--CCCCccccCCCccEEEeeECC
Confidence 79999999876 55 35999999999999999999988788888899999877 788776666 7999999876
Q ss_pred cCCCCCCcceeeEEEEecC---CCCCCeEEEEEEcCHHHHHHHhcCCCCCCCcccceEEeeee
Q psy1145 75 KTSENKGLVGSQFRIILNH---QKQFTGIFGQVIYGLEYIDAISTYSNAQGQPTERFYISNCG 134 (138)
Q Consensus 75 ~~~~~~~~~~SqF~Itl~~---ld~~~~vfG~Vv~G~~vl~~i~~~~~~~~~P~~~v~I~~cg 134 (138)
+ ++++|||||++++ ||++|+|||||++|||||++|+++++++++|.++|+|.+||
T Consensus 107 ~-----~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~i~I~~cG 164 (164)
T cd01926 107 P-----NTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKVVIADCG 164 (164)
T ss_pred C-----CCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCCeEEEECC
Confidence 5 7899999999985 89999999999999999999999998888999999999998
No 6
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=8.3e-40 Score=241.90 Aligned_cols=128 Identities=27% Similarity=0.460 Sum_probs=113.7
Q ss_pred hhhhHHHhcCCC--CC--eeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccccCCCCCCCCCC--cceeeeecccc
Q psy1145 2 ATNFELLTIGEF--PG--LSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGAR--RGAVGMRRIKK 75 (138)
Q Consensus 2 ~~NF~~L~~g~~--~g--~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~~~~~h--~G~lsm~~~~~ 75 (138)
|+||++||+|+. .+ .+|++|.||||+|+++||+||+..+++.++.++|+..+ ++|.+.+.| +|+|||++.++
T Consensus 48 ~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g~~f--~~e~~~~~h~~~G~lsma~~g~ 125 (186)
T PLN03149 48 AENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSKF--EDENFIAKHTGPGLLSMANSGP 125 (186)
T ss_pred HHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccCCcc--CCcccccccCCCCEEEEeeCCC
Confidence 799999998752 12 35999999999999999999988788889999999877 788766655 79999998775
Q ss_pred CCCCCCcceeeEEEEecC---CCCCCeEEEEEE-cCHHHHHHHhcCCC-CCCCcccceEEeeeeEe
Q psy1145 76 TSENKGLVGSQFRIILNH---QKQFTGIFGQVI-YGLEYIDAISTYSN-AQGQPTERFYISNCGKW 136 (138)
Q Consensus 76 ~~~~~~~~~SqF~Itl~~---ld~~~~vfG~Vv-~G~~vl~~i~~~~~-~~~~P~~~v~I~~cg~l 136 (138)
++++||||||+++ ||++|+|||||+ +|||||++|+++++ .+++|.++|+|.+||++
T Consensus 126 -----~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~cG~~ 186 (186)
T PLN03149 126 -----NTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186 (186)
T ss_pred -----CCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEeCEeC
Confidence 7999999999975 899999999999 79999999999998 78899999999999985
No 7
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=1.5e-39 Score=240.02 Aligned_cols=129 Identities=25% Similarity=0.401 Sum_probs=114.3
Q ss_pred hhhhHHHhcCCC-----CCeeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccccCCCCCCCCCC--cceeeeeccc
Q psy1145 2 ATNFELLTIGEF-----PGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGAR--RGAVGMRRIK 74 (138)
Q Consensus 2 ~~NF~~L~~g~~-----~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~~~~~h--~G~lsm~~~~ 74 (138)
|+||++||+|.. +...|++|.||||+|+++||+||+...++.++.++|+..+ ++|...+.| +|+|||++.+
T Consensus 45 ~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~g~~~--~~e~~~~~h~~~G~lsma~~g 122 (183)
T PTZ00060 45 AENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGESIYGRKF--TDENFKLKHDQPGLLSMANAG 122 (183)
T ss_pred HHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCCCCCccccccc--CCccccccCCCCCEEEeccCC
Confidence 799999998641 1234999999999999999999988778889999999876 778776666 6999999876
Q ss_pred cCCCCCCcceeeEEEEecC---CCCCCeEEEEEEcCHHHHHHHhcCCCCCCCcccceEEeeeeEec
Q psy1145 75 KTSENKGLVGSQFRIILNH---QKQFTGIFGQVIYGLEYIDAISTYSNAQGQPTERFYISNCGKWE 137 (138)
Q Consensus 75 ~~~~~~~~~~SqF~Itl~~---ld~~~~vfG~Vv~G~~vl~~i~~~~~~~~~P~~~v~I~~cg~l~ 137 (138)
+ ++++||||||+.+ ||++|+|||||++|||||++|+++++.+++|.++|+|.+||+|.
T Consensus 123 ~-----~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~~~v~I~~cg~~~ 183 (183)
T PTZ00060 123 P-----NTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKPVVVTDCGELQ 183 (183)
T ss_pred C-----CCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCcCCeEEEEeEEcC
Confidence 5 7899999999986 89999999999999999999999999889999999999999973
No 8
>KOG0881|consensus
Probab=100.00 E-value=1.4e-40 Score=228.61 Aligned_cols=122 Identities=25% Similarity=0.326 Sum_probs=111.7
Q ss_pred ChhhhHHHhcCCCCCeeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccccCCCCCC-CCCC--cceeeeeccccCC
Q psy1145 1 MATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESH-LGAR--RGAVGMRRIKKTS 77 (138)
Q Consensus 1 ~~~NF~~L~~g~~~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~~-~~~h--~G~lsm~~~~~~~ 77 (138)
.|+||..|++ +++ |++..||||+++|+|||||++ +.+.||.||||..| +||-. .++| .|+|||||.+|
T Consensus 33 TC~NF~eLar---rgY-Yn~v~FHRii~DFmiQGGDPT-GTGRGGaSIYG~kF--~DEi~~dLkhTGAGILsMANaGP-- 103 (164)
T KOG0881|consen 33 TCQNFAELAR---RGY-YNGVIFHRIIKDFMIQGGDPT-GTGRGGASIYGDKF--EDEIHSDLKHTGAGILSMANAGP-- 103 (164)
T ss_pred HHHHHHHHHh---ccc-ccceeeeehhhhheeecCCCC-CCCCCccccccchh--hhhhhhhhcccchhhhhhhccCC--
Confidence 4899999998 888 999999999999999999955 89999999999988 88855 5677 79999999998
Q ss_pred CCCCcceeeEEEEecC---CCCCCeEEEEEEcCHHHHHHHhcCCC-CCCCcccceEEeeee
Q psy1145 78 ENKGLVGSQFRIILNH---QKQFTGIFGQVIYGLEYIDAISTYSN-AQGQPTERFYISNCG 134 (138)
Q Consensus 78 ~~~~~~~SqF~Itl~~---ld~~~~vfG~Vv~G~~vl~~i~~~~~-~~~~P~~~v~I~~cg 134 (138)
|+|||||||||.| ||++|++||||..||+|+++|..+.+ .+++|..+++|..+-
T Consensus 104 ---nTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~ 161 (164)
T KOG0881|consen 104 ---NTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAY 161 (164)
T ss_pred ---CCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEeee
Confidence 8999999999986 99999999999999999999999987 668999999998764
No 9
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=1.2e-38 Score=243.76 Aligned_cols=126 Identities=23% Similarity=0.291 Sum_probs=110.0
Q ss_pred ChhhhHHHhcCCCCC--------eeecCCEEEEEeCC-cEEEeCCCCCCCCCCccccccccccCCCCCCCCCC--cceee
Q psy1145 1 MATNFELLTIGEFPG--------LSYRNCALSQLWQF-ESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGAR--RGAVG 69 (138)
Q Consensus 1 ~~~NF~~L~~g~~~g--------~~Y~gt~f~ri~~~-~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~~~~~h--~G~ls 69 (138)
.|+||++||+|+ ++ ..|+++.||||+|+ ++||+||+.. .+.+++|.+| ++|++.+.| +|+||
T Consensus 81 T~eNF~~Lc~g~-~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~----~g~s~~G~~f--~dE~~~~~h~~~G~Ls 153 (249)
T PTZ00221 81 TVENFRALITGS-CGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS----FNVSSTGTPI--ADEGYRHRHTERGLLT 153 (249)
T ss_pred HHHHHHHHhhcc-cccccccCcccccCCCEEEEEeCCCCEEEeCCCCC----CCccCCCCcc--cCccccccCCCCCEEE
Confidence 389999999986 43 24999999999986 8999999753 3457788877 899887666 79999
Q ss_pred eeccccCCCCCCcceeeEEEEecC---CCCCCeEEEEEEcCHHHHHHHhcCCC-CCCCcccceEEeeeeEecC
Q psy1145 70 MRRIKKTSENKGLVGSQFRIILNH---QKQFTGIFGQVIYGLEYIDAISTYSN-AQGQPTERFYISNCGKWEG 138 (138)
Q Consensus 70 m~~~~~~~~~~~~~~SqF~Itl~~---ld~~~~vfG~Vv~G~~vl~~i~~~~~-~~~~P~~~v~I~~cg~l~~ 138 (138)
|++.++ ++++|||||||.+ ||++|+|||||++|||||++|+++++ .+++|.++|+|.+||+|++
T Consensus 154 Man~Gp-----ntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP~~~V~I~~Cgvl~~ 221 (249)
T PTZ00221 154 MISEGP-----HTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGALTG 221 (249)
T ss_pred eCcCCC-----CCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCCCCCeEEEECeEecC
Confidence 998876 8999999999985 99999999999999999999999986 6789999999999999874
No 10
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=2.6e-37 Score=223.59 Aligned_cols=124 Identities=24% Similarity=0.344 Sum_probs=109.4
Q ss_pred hhhhHHHhcCCCCCeeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccccCCCCCC-CCCC--cceeeeeccccCCC
Q psy1145 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESH-LGAR--RGAVGMRRIKKTSE 78 (138)
Q Consensus 2 ~~NF~~L~~g~~~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~~-~~~h--~G~lsm~~~~~~~~ 78 (138)
|+||++||+ .++ |+++.||||+|+++||+||+. +++.++.++|+.++ ++|.. .+.| +|+|||++.++
T Consensus 24 ~~nF~~L~~---~g~-Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~--~~E~~~~~~h~~~G~v~ma~~~~--- 93 (159)
T cd01923 24 CENFIKLCK---KGY-YDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPF--KDEFKPNLSHDGRGVLSMANSGP--- 93 (159)
T ss_pred HHHHHHHHh---cCc-cCCcEEEEEeCCcEEEecccC-CCCCCCccccCCcc--CcccccCcCcCCCcEEEEeeCCC---
Confidence 799999998 556 999999999999999999965 66788889998876 77743 3444 89999998765
Q ss_pred CCCcceeeEEEEecC---CCCCCeEEEEEEcCHHHHHHHhcCCC-CCCCcccceEEeeeeEec
Q psy1145 79 NKGLVGSQFRIILNH---QKQFTGIFGQVIYGLEYIDAISTYSN-AQGQPTERFYISNCGKWE 137 (138)
Q Consensus 79 ~~~~~~SqF~Itl~~---ld~~~~vfG~Vv~G~~vl~~i~~~~~-~~~~P~~~v~I~~cg~l~ 137 (138)
++++|||||++++ ||++|+|||||++|||+|++|+++++ .+++|.++|+|.+|.++.
T Consensus 94 --~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~ 154 (159)
T cd01923 94 --NTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFV 154 (159)
T ss_pred --CCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEe
Confidence 7899999999986 89999999999999999999999986 678999999999999875
No 11
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=2.5e-37 Score=221.25 Aligned_cols=119 Identities=26% Similarity=0.337 Sum_probs=104.8
Q ss_pred hhhhHHHhcCCCCCeeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccccCCCCCC-CCCC--cceeeeeccccCCC
Q psy1145 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESH-LGAR--RGAVGMRRIKKTSE 78 (138)
Q Consensus 2 ~~NF~~L~~g~~~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~~-~~~h--~G~lsm~~~~~~~~ 78 (138)
|+||++||+ .++ |+++.||||+|+++||+||+. +++.++.++|+..+ ++|.. .+.| +|+||||+.++
T Consensus 22 ~~nF~~L~~---~g~-Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~--~~e~~~~~~h~~~G~l~ma~~~~--- 91 (148)
T cd01927 22 VENFTTHAR---NGY-YNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEF--EDEFSPSLKHDRPYTLSMANAGP--- 91 (148)
T ss_pred HHHHHHHhh---cCC-cCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCcc--ccccccccCcCCCeEEEEeeCCC---
Confidence 799999998 456 999999999999999999964 67788889998776 77754 4544 69999998765
Q ss_pred CCCcceeeEEEEecC---CCCCCeEEEEEEcCHHHHHHHhcCCC-CCCCcccceEEee
Q psy1145 79 NKGLVGSQFRIILNH---QKQFTGIFGQVIYGLEYIDAISTYSN-AQGQPTERFYISN 132 (138)
Q Consensus 79 ~~~~~~SqF~Itl~~---ld~~~~vfG~Vv~G~~vl~~i~~~~~-~~~~P~~~v~I~~ 132 (138)
++++|||||++.+ ||++|+|||||++|||||++|+++++ .+++|.++|+|.+
T Consensus 92 --~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 92 --NTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred --CCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 7999999999985 89999999999999999999999997 6789999999975
No 12
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=4.1e-37 Score=221.27 Aligned_cols=120 Identities=27% Similarity=0.381 Sum_probs=106.1
Q ss_pred hhhhHHHhcCCCCCeeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccccCCCCCC-CCCC--cceeeeeccccCCC
Q psy1145 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESH-LGAR--RGAVGMRRIKKTSE 78 (138)
Q Consensus 2 ~~NF~~L~~g~~~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~~-~~~h--~G~lsm~~~~~~~~ 78 (138)
|+||++||+ .++ |+++.||||+|++++|+||+. +++.++.++|+.++ ++|.. .+.| +|+|+|++.++
T Consensus 25 ~~nF~~L~~---~g~-Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~--~~e~~~~~~~~~~G~v~ma~~~~--- 94 (153)
T cd01928 25 CENFLALCA---SGY-YNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKF--EDEFRETLKHDSRGVVSMANNGP--- 94 (153)
T ss_pred HHHHHHHHh---cCc-cCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCcc--ccccccCCCcCCCcEEEEeeCCC---
Confidence 799999998 446 999999999999999999964 56778888998876 77764 3444 89999998765
Q ss_pred CCCcceeeEEEEecC---CCCCCeEEEEEEcCHHHHHHHhcCCC-CCCCcccceEEeee
Q psy1145 79 NKGLVGSQFRIILNH---QKQFTGIFGQVIYGLEYIDAISTYSN-AQGQPTERFYISNC 133 (138)
Q Consensus 79 ~~~~~~SqF~Itl~~---ld~~~~vfG~Vv~G~~vl~~i~~~~~-~~~~P~~~v~I~~c 133 (138)
++++|||||++.+ ||++|+|||||++|||||++|+++++ .+++|.++|+|.+|
T Consensus 95 --~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~ 151 (153)
T cd01928 95 --NTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDV 151 (153)
T ss_pred --CCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEe
Confidence 7889999999985 89999999999999999999999987 67899999999998
No 13
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=6.3e-37 Score=222.90 Aligned_cols=127 Identities=26% Similarity=0.329 Sum_probs=105.9
Q ss_pred ChhhhHHHhcCCCCCeeecCCEEEEEeCCcEEEeCCCCCCCCCCcccccccc-----ccCCCCCC-CCCC--cceeeeec
Q psy1145 1 MATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQE-----YFRPDESH-LGAR--RGAVGMRR 72 (138)
Q Consensus 1 ~~~NF~~L~~g~~~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~-----~~~~~e~~-~~~h--~G~lsm~~ 72 (138)
.|+||++||+ .++ |+++.||||+|+++||+||+. .++.++.++|+.. ..+++|.. .++| +|+||||+
T Consensus 21 t~~nF~~L~~---~~~-Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~h~~~G~l~ma~ 95 (166)
T cd01921 21 ACLNFLKLCK---LKY-YNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVN 95 (166)
T ss_pred HHHHHHHHHh---cCC-cCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccCcccCcccCCccccCCceEEEEeE
Confidence 3799999998 456 999999999999999999965 5667777776521 11255543 4444 79999999
Q ss_pred cccCCCCCCcceeeEEEEecC----CCCCCeEEEEEEcCHHHHHHHhcCCC-CCCCcccceEEeeeeEec
Q psy1145 73 IKKTSENKGLVGSQFRIILNH----QKQFTGIFGQVIYGLEYIDAISTYSN-AQGQPTERFYISNCGKWE 137 (138)
Q Consensus 73 ~~~~~~~~~~~~SqF~Itl~~----ld~~~~vfG~Vv~G~~vl~~i~~~~~-~~~~P~~~v~I~~cg~l~ 137 (138)
.++ ++++||||||+.+ ||++|+|||||++|||||++|+++++ .+++|.++|+|.+|+++.
T Consensus 96 ~~~-----~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~~ 160 (166)
T cd01921 96 AGD-----NLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHILD 160 (166)
T ss_pred CCC-----CCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEEC
Confidence 876 6799999999953 89999999999999999999999887 678999999999999885
No 14
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-37 Score=220.03 Aligned_cols=122 Identities=25% Similarity=0.323 Sum_probs=101.6
Q ss_pred hhhhHHHhcCCCCCeeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccccCCCCCCCC---CC-cceeeeeccccCC
Q psy1145 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLG---AR-RGAVGMRRIKKTS 77 (138)
Q Consensus 2 ~~NF~~L~~g~~~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~~~~---~h-~G~lsm~~~~~~~ 77 (138)
|+||++||+ +++ |+|+.||||+|+|||||||++..++.++.+ .++ ++|.+.. .| +|+|||||.+
T Consensus 24 v~NF~~l~~---~g~-Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~---~~f--~~E~~~~~~~~~~~G~lsMA~~g--- 91 (158)
T COG0652 24 VANFLQLVK---EGF-YDGTIFHRVIPGFMIQGGDPTGGDGTGGPG---PPF--KDENFALNGDRHKRGTLSMARAG--- 91 (158)
T ss_pred HHHHHHHHH---cCC-CCCceEEEeecCceeecCCCCCCCCCCCCC---CCC--cccccccccccCCcceEeEcccC---
Confidence 799999998 667 999999999999999999998776777665 444 8886543 23 7999999988
Q ss_pred CCCCcceeeEEEEecC---CCCCCeEEEEEEcCHHHHHHHhcCCCCC-----CCcccceEEeeeeEe
Q psy1145 78 ENKGLVGSQFRIILNH---QKQFTGIFGQVIYGLEYIDAISTYSNAQ-----GQPTERFYISNCGKW 136 (138)
Q Consensus 78 ~~~~~~~SqF~Itl~~---ld~~~~vfG~Vv~G~~vl~~i~~~~~~~-----~~P~~~v~I~~cg~l 136 (138)
+|++++|||||++.+ ||++|+|||+|++|||+|++|++..+.. ..|..+++|....++
T Consensus 92 -~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~~ 157 (158)
T COG0652 92 -DPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKIV 157 (158)
T ss_pred -CcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeeee
Confidence 248999999999985 9999999999999999999999876532 356677888776654
No 15
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=7.9e-37 Score=218.29 Aligned_cols=118 Identities=25% Similarity=0.321 Sum_probs=103.9
Q ss_pred hhhhHHHhcCCCCCeeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccccCCCCC-CCCCC--cceeeeeccccCCC
Q psy1145 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDES-HLGAR--RGAVGMRRIKKTSE 78 (138)
Q Consensus 2 ~~NF~~L~~g~~~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~-~~~~h--~G~lsm~~~~~~~~ 78 (138)
|+||++||+ .++ |+++.||||+|+++||+||+. +++.++.++|+.++ ++|. ..+.| +|+|||++.++
T Consensus 22 ~~nF~~L~~---~g~-Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~--~~e~~~~~~h~~~G~l~ma~~~~--- 91 (146)
T cd01922 22 CKNFYELAK---RGY-YNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKF--EDEIHPELKHTGAGILSMANAGP--- 91 (146)
T ss_pred HHHHHHHHh---cCC-cCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCc--ccccccCcCCCCCeEEEEeeCCC---
Confidence 799999998 556 999999999999999999964 56677888998876 7773 34444 79999998765
Q ss_pred CCCcceeeEEEEecC---CCCCCeEEEEEEcCHHHHHHHhcCCCCCCCcccceEEe
Q psy1145 79 NKGLVGSQFRIILNH---QKQFTGIFGQVIYGLEYIDAISTYSNAQGQPTERFYIS 131 (138)
Q Consensus 79 ~~~~~~SqF~Itl~~---ld~~~~vfG~Vv~G~~vl~~i~~~~~~~~~P~~~v~I~ 131 (138)
++++|||||++++ ||++|+|||||++|||||++|+++++++++|.++|+|.
T Consensus 92 --~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I~ 145 (146)
T cd01922 92 --NTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKIL 145 (146)
T ss_pred --CCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEEe
Confidence 7899999999985 89999999999999999999999998788999999996
No 16
>KOG0865|consensus
Probab=100.00 E-value=7.1e-38 Score=226.73 Aligned_cols=128 Identities=24% Similarity=0.462 Sum_probs=121.0
Q ss_pred ChhhhHHHhcCCCCCeeecCCEEEE---EeCCcEEEeCCCCCCCCCCccccccccccCCCCCCCCCC--cceeeeecccc
Q psy1145 1 MATNFELLTIGEFPGLSYRNCALSQ---LWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGAR--RGAVGMRRIKK 75 (138)
Q Consensus 1 ~~~NF~~L~~g~~~g~~Y~gt~f~r---i~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~~~~~h--~G~lsm~~~~~ 75 (138)
.+|||.+||+|+ +++.|++++||| .++++++|+||++.++++++.|||++.| +||++.++| +|+|||||.+|
T Consensus 32 taenf~al~tge-kg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~ekF--~DenFilkhtgpGiLSmaNagp 108 (167)
T KOG0865|consen 32 TAENFRALCTGE-KGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGEKF--DDENFILKHTGPGILSMANAGP 108 (167)
T ss_pred hHhhhhhcccCC-CccccccchhhhccccccceeeccCcccccCCccceEeccccc--CCcCcEEecCCCCeeehhhcCC
Confidence 379999999999 999999999999 3457999999999999999999999998 999999998 79999999987
Q ss_pred CCCCCCcceeeEEEEec---CCCCCCeEEEEEEcCHHHHHHHhcCCCCCCCcccceEEeeeeEe
Q psy1145 76 TSENKGLVGSQFRIILN---HQKQFTGIFGQVIYGLEYIDAISTYSNAQGQPTERFYISNCGKW 136 (138)
Q Consensus 76 ~~~~~~~~~SqF~Itl~---~ld~~~~vfG~Vv~G~~vl~~i~~~~~~~~~P~~~v~I~~cg~l 136 (138)
++|+||||||+. |||++|+|||+|.+||+++++|+...+.+++|..+|.|.+||+|
T Consensus 109 -----ntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~gk~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 109 -----NTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNGKTSKKITIADCGQL 167 (167)
T ss_pred -----CccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCCcccccEEEecCCcC
Confidence 899999999998 69999999999999999999999999999999999999999975
No 17
>KOG0883|consensus
Probab=100.00 E-value=3.3e-37 Score=244.29 Aligned_cols=123 Identities=25% Similarity=0.354 Sum_probs=112.8
Q ss_pred hhhhHHHhcCCCCCeeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccccCCCC-CCCCCC--cceeeeeccccCCC
Q psy1145 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDE-SHLGAR--RGAVGMRRIKKTSE 78 (138)
Q Consensus 2 ~~NF~~L~~g~~~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e-~~~~~h--~G~lsm~~~~~~~~ 78 (138)
|+||+.||. +|| |+++.|||.+.+|||||||++ +.|.||.||||.+| .|| ...++| +|+|||||.++
T Consensus 302 ceNFI~lc~---~gY-Ynnt~FHRsIrnFmiQGGDPT-GTG~GGeSiWgKpF--kDEf~~~l~H~gRGvlSMANsGp--- 371 (518)
T KOG0883|consen 302 CENFITLCK---NGY-YNNTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPF--KDEFCSNLSHDGRGVLSMANSGP--- 371 (518)
T ss_pred HHHHHHHHh---ccc-ccchHHHHHHHHHeeeCCCCC-CCCCCCccccCCcc--ccccCCCCCcCCcceEeeccCCC---
Confidence 899999998 888 999999999999999999954 89999999999998 787 335666 89999999998
Q ss_pred CCCcceeeEEEEecC---CCCCCeEEEEEEcCHHHHHHHhcCCC-CCCCcccceEEeeeeEe
Q psy1145 79 NKGLVGSQFRIILNH---QKQFTGIFGQVIYGLEYIDAISTYSN-AQGQPTERFYISNCGKW 136 (138)
Q Consensus 79 ~~~~~~SqF~Itl~~---ld~~~~vfG~Vv~G~~vl~~i~~~~~-~~~~P~~~v~I~~cg~l 136 (138)
|+|||||||+..+ ||++|++|||||.|+|+|.+|+.+++ +.++|..+|+|.+.-+.
T Consensus 372 --nTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VF 431 (518)
T KOG0883|consen 372 --NTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVF 431 (518)
T ss_pred --CCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEe
Confidence 8999999999986 99999999999999999999999997 66899999999987654
No 18
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=2.9e-34 Score=208.57 Aligned_cols=122 Identities=22% Similarity=0.256 Sum_probs=97.6
Q ss_pred hhhhHHHhcCCCCCeeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccccCCCCC-CCCCC-cceeeeeccccCCCC
Q psy1145 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDES-HLGAR-RGAVGMRRIKKTSEN 79 (138)
Q Consensus 2 ~~NF~~L~~g~~~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~-~~~~h-~G~lsm~~~~~~~~~ 79 (138)
|+||++||+ .++ |+++.||||+|+|+||+||+..+.+. ..++.++ ++|. ..++| +|+||||+.+ +
T Consensus 24 ~~nF~~L~~---~g~-Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~--~~e~~~~~~~~~G~lsma~~~----~ 90 (164)
T PRK10791 24 VKNFLDYCR---EGF-YNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPI--KNEANNGLKNTRGTLAMARTQ----A 90 (164)
T ss_pred HHHHHHHHh---cCC-cCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCc--CCcccccccCCCcEEEECCCC----C
Confidence 799999998 557 99999999999999999997544322 1234444 5553 34444 8999999864 2
Q ss_pred CCcceeeEEEEecC---CC-------C-CCeEEEEEEcCHHHHHHHhcCCCC-----CCCcccceEEeeeeEe
Q psy1145 80 KGLVGSQFRIILNH---QK-------Q-FTGIFGQVIYGLEYIDAISTYSNA-----QGQPTERFYISNCGKW 136 (138)
Q Consensus 80 ~~~~~SqF~Itl~~---ld-------~-~~~vfG~Vv~G~~vl~~i~~~~~~-----~~~P~~~v~I~~cg~l 136 (138)
|++++|||||++.+ || + +|+|||||++|||||++|+++++. +++|..+|+|.+|.+.
T Consensus 91 p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~i~ 163 (164)
T PRK10791 91 PHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVS 163 (164)
T ss_pred cCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEEEEEEe
Confidence 48999999999985 44 3 799999999999999999999874 3699999999999764
No 19
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=3.6e-34 Score=209.33 Aligned_cols=124 Identities=25% Similarity=0.300 Sum_probs=107.9
Q ss_pred hhhhHHHhcCCCCCeeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccccCCCCCC-CCCC--cceeeeeccccCCC
Q psy1145 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESH-LGAR--RGAVGMRRIKKTSE 78 (138)
Q Consensus 2 ~~NF~~L~~g~~~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~~-~~~h--~G~lsm~~~~~~~~ 78 (138)
|+||++||+ +++ |+++.||||+|+++||+||+. +++.++.++|+..+ ++|.. .+.| +|+|+||+.++
T Consensus 30 ~~nF~~L~~---~~~-Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~s~~g~~~--~~E~~~~~~~~~~G~l~ma~~g~--- 99 (171)
T cd01925 30 CRNFIQLCL---EGY-YDNTIFHRVVPGFIIQGGDPT-GTGTGGESIYGEPF--KDEFHSRLRFNRRGLVGMANAGD--- 99 (171)
T ss_pred HHHHHHHHh---cCC-CCCCEEEEEcCCcEEEccccC-CCCccCcccCCCcc--CcccccCcCCCCCcEEEECcCCC---
Confidence 789999998 556 999999999999999999965 67788889999876 77754 3333 89999998876
Q ss_pred CCCcceeeEEEEecC---CCCCCeEEEEEEc-CHHHHHHHhcCCC-CCCCcccceEEeeeeEec
Q psy1145 79 NKGLVGSQFRIILNH---QKQFTGIFGQVIY-GLEYIDAISTYSN-AQGQPTERFYISNCGKWE 137 (138)
Q Consensus 79 ~~~~~~SqF~Itl~~---ld~~~~vfG~Vv~-G~~vl~~i~~~~~-~~~~P~~~v~I~~cg~l~ 137 (138)
++++|||||++.+ ||++|+|||||++ ++++|++|+++++ .+++|..+|+|.+|++++
T Consensus 100 --~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~ 161 (171)
T cd01925 100 --DSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLE 161 (171)
T ss_pred --CCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEc
Confidence 6899999999975 8999999999994 6889999999887 678999999999999875
No 20
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=4.6e-34 Score=211.83 Aligned_cols=123 Identities=23% Similarity=0.248 Sum_probs=99.3
Q ss_pred hhhhHHHhcCCCCCeeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccccCCCCCC-CCCC-cceeeeeccccCCCC
Q psy1145 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESH-LGAR-RGAVGMRRIKKTSEN 79 (138)
Q Consensus 2 ~~NF~~L~~g~~~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~~-~~~h-~G~lsm~~~~~~~~~ 79 (138)
|+||++||+ .++ |+++.||||+|+|+||+||+....+. ..++.++ ++|.. .++| +|+||||+.+.
T Consensus 53 ~~NF~~L~~---~g~-Ydg~~FhRvi~~f~iQgG~~~~~~~~---~~~~~~~--~~e~~~~l~~~~G~lama~~~~---- 119 (190)
T PRK10903 53 VKNFVDYVN---SGF-YNNTTFHRVIPGFMIQGGGFTEQMQQ---KKPNPPI--KNEADNGLRNTRGTIAMARTAD---- 119 (190)
T ss_pred HHHHHHHHh---cCC-cCCcEEEEEeCCceEEeCCcCCCCCC---CCCCCcc--cCcccccCcCCCcEEEeCCCCC----
Confidence 799999998 567 99999999999999999997643221 2234444 55532 3334 89999998652
Q ss_pred CCcceeeEEEEecC---CC-----CCCeEEEEEEcCHHHHHHHhcCCCC-----CCCcccceEEeeeeEec
Q psy1145 80 KGLVGSQFRIILNH---QK-----QFTGIFGQVIYGLEYIDAISTYSNA-----QGQPTERFYISNCGKWE 137 (138)
Q Consensus 80 ~~~~~SqF~Itl~~---ld-----~~~~vfG~Vv~G~~vl~~i~~~~~~-----~~~P~~~v~I~~cg~l~ 137 (138)
|++++|||||++++ || ++|+|||||++|||||++|++++++ +++|.++|+|.+|++++
T Consensus 120 ~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~v~~ 190 (190)
T PRK10903 120 KDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 190 (190)
T ss_pred CCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEEEEEeC
Confidence 47999999999985 66 4899999999999999999999874 36999999999998864
No 21
>KOG0882|consensus
Probab=100.00 E-value=1.9e-34 Score=232.00 Aligned_cols=122 Identities=26% Similarity=0.318 Sum_probs=110.6
Q ss_pred ChhhhHHHhcCCCCCeeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccccCCCCCC-CCCC--cceeeeeccccCC
Q psy1145 1 MATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESH-LGAR--RGAVGMRRIKKTS 77 (138)
Q Consensus 1 ~~~NF~~L~~g~~~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~~-~~~h--~G~lsm~~~~~~~ 77 (138)
.||||.-.|+ .|| |+|+.||||+++||||+||+ .++|+||.||||+.| +||-+ .|+| +-.|||||+|+
T Consensus 428 tvenf~th~r---ngy-y~~~~fhriik~fmiqtgdp-~g~gtggesiwg~df--edefh~~lrhdrpft~smanag~-- 498 (558)
T KOG0882|consen 428 TVENFTTHSR---NGY-YDNHTFHRIIKGFMIQTGDP-LGDGTGGESIWGKDF--EDEFHPNLRHDRPFTVSMANAGP-- 498 (558)
T ss_pred hhhhhhcccc---Ccc-ccCcchHHhhhhheeecCCC-CCCCCCCcccccccc--hhhcCcccccCCCceEEecccCC--
Confidence 3799999887 778 99999999999999999995 589999999999988 88854 4666 79999999997
Q ss_pred CCCCcceeeEEEEec---CCCCCCeEEEEEEcCHHHHHHHhcCCC-CCCCcccceEEeeee
Q psy1145 78 ENKGLVGSQFRIILN---HQKQFTGIFGQVIYGLEYIDAISTYSN-AQGQPTERFYISNCG 134 (138)
Q Consensus 78 ~~~~~~~SqF~Itl~---~ld~~~~vfG~Vv~G~~vl~~i~~~~~-~~~~P~~~v~I~~cg 134 (138)
|+||||||||+. |||++|+|||||+.||||+++|+++.+ ..+||+++|.|.|.-
T Consensus 499 ---ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinis 556 (558)
T KOG0882|consen 499 ---NTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINIS 556 (558)
T ss_pred ---CCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEe
Confidence 899999999997 499999999999999999999999997 778999999998864
No 22
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=6.7e-33 Score=199.74 Aligned_cols=118 Identities=22% Similarity=0.266 Sum_probs=94.2
Q ss_pred hhhhHHHhcCCCCCeeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccccCCCCCC-CCCC-cceeeeeccccCCCC
Q psy1145 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESH-LGAR-RGAVGMRRIKKTSEN 79 (138)
Q Consensus 2 ~~NF~~L~~g~~~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~~-~~~h-~G~lsm~~~~~~~~~ 79 (138)
|+||++||+ +++ |+++.||||+|+++||+||+....+. ..++.++ ++|.. .++| +|+||||+.+.
T Consensus 22 ~~nF~~L~~---~g~-Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~--~~e~~~~~~~~~G~v~ma~~~~---- 88 (155)
T cd01920 22 VENFLAYVR---KGF-YDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPI--KNEAGNGLSNTRGTIAMARTNA---- 88 (155)
T ss_pred HHHHHHHHh---cCC-CCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcc--cCcccccccCCceEEEECCCCC----
Confidence 799999998 567 99999999999999999997643322 2234444 55543 2334 89999998642
Q ss_pred CCcceeeEEEEecC---CCC-----CCeEEEEEEcCHHHHHHHhcCCCCC-----CCcccceEEee
Q psy1145 80 KGLVGSQFRIILNH---QKQ-----FTGIFGQVIYGLEYIDAISTYSNAQ-----GQPTERFYISN 132 (138)
Q Consensus 80 ~~~~~SqF~Itl~~---ld~-----~~~vfG~Vv~G~~vl~~i~~~~~~~-----~~P~~~v~I~~ 132 (138)
|++++|||||++.+ ||. +|+|||||++|||||++|+++++++ ++|..+|+|..
T Consensus 89 ~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~ 154 (155)
T cd01920 89 PDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIES 154 (155)
T ss_pred CCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEE
Confidence 47999999999986 674 7999999999999999999998743 58999999975
No 23
>KOG0884|consensus
Probab=100.00 E-value=1.6e-33 Score=192.78 Aligned_cols=122 Identities=25% Similarity=0.327 Sum_probs=109.1
Q ss_pred ChhhhHHHhcCCCCCeeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccccCCCCCC-CCCC--cceeeeeccccCC
Q psy1145 1 MATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESH-LGAR--RGAVGMRRIKKTS 77 (138)
Q Consensus 1 ~~~NF~~L~~g~~~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~~-~~~h--~G~lsm~~~~~~~ 77 (138)
.||||+.||..+ + |+++.|||-+|+|++|+||++ +.|.||.||||.+| +||.. .++| +|+||||+.+|
T Consensus 24 tce~~l~~~~~~---~-~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~f--ede~~~~lkh~~rg~vsmanngp-- 94 (161)
T KOG0884|consen 24 TCENFLALCASD---Y-YNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKF--EDEYSEYLKHNVRGVVSMANNGP-- 94 (161)
T ss_pred HHHHHHHHhhhh---h-ccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcc--hHHHHHHHhhccceeEEcccCCC--
Confidence 389999999754 5 999999999999999999955 78999999999998 88865 3566 89999999987
Q ss_pred CCCCcceeeEEEEecC---CCCCCeEEEEEEcCHHHHHHHhcCCC--CCCCcccceEEeeee
Q psy1145 78 ENKGLVGSQFRIILNH---QKQFTGIFGQVIYGLEYIDAISTYSN--AQGQPTERFYISNCG 134 (138)
Q Consensus 78 ~~~~~~~SqF~Itl~~---ld~~~~vfG~Vv~G~~vl~~i~~~~~--~~~~P~~~v~I~~cg 134 (138)
++|+||||||... ||-+|++||+||+|+|.|+.|++++. ...+|+.++.|.+.-
T Consensus 95 ---~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~it 153 (161)
T KOG0884|consen 95 ---NTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDIT 153 (161)
T ss_pred ---CCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeE
Confidence 8999999999985 99999999999999999999999997 447899999998754
No 24
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=2.7e-32 Score=195.62 Aligned_cols=125 Identities=29% Similarity=0.365 Sum_probs=102.1
Q ss_pred ChhhhHHHhcCCCCCeeecCCEEEEEeCCcEEEeCCCCCCCCCCc-cccccccccCCCCCC--CCCC-cceeeeeccccC
Q psy1145 1 MATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEG-RSVFVQEYFRPDESH--LGAR-RGAVGMRRIKKT 76 (138)
Q Consensus 1 ~~~NF~~L~~g~~~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~-~si~g~~~~~~~e~~--~~~h-~G~lsm~~~~~~ 76 (138)
+|+||++||+ .++ |+++.|||++|+++||+|++......+. ....+.++ ++|.. .+.| +|+|+|++.++
T Consensus 24 ~~~nF~~l~~---~~~-y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~--~~E~~~~~~~~~~G~v~~~~~~~- 96 (155)
T PF00160_consen 24 TVENFLRLCT---SGF-YDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPI--PDEFNPSLLKHRRGLVSMARSGK- 96 (155)
T ss_dssp HHHHHHHHHH---TTS-STTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCB--SSSGBTTSSSSSTTEEEEEBSSS-
T ss_pred HHHhhehhhc---ccc-cCCceeecccccceeeeeeccCCCCcccccccCcccc--ccccccccccccceeeeeccccc-
Confidence 3899999998 445 9999999999999999999765443111 12233344 77763 4555 89999998763
Q ss_pred CCCCCcceeeEEEEecC---CCCCCeEEEEEEcCHHHHHHHhcCCCCCCCcccceEEeeeeE
Q psy1145 77 SENKGLVGSQFRIILNH---QKQFTGIFGQVIYGLEYIDAISTYSNAQGQPTERFYISNCGK 135 (138)
Q Consensus 77 ~~~~~~~~SqF~Itl~~---ld~~~~vfG~Vv~G~~vl~~i~~~~~~~~~P~~~v~I~~cg~ 135 (138)
++++++|||||+|++ +|++|+|||+|++||+||++|+++++++ +|.++|+|.+||+
T Consensus 97 --~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~~~v~I~~cgv 155 (155)
T PF00160_consen 97 --DPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPKQDVTISSCGV 155 (155)
T ss_dssp --STTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBSSTEEEEEEEE
T ss_pred --CCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccCCCeEEEEeEC
Confidence 357889999999985 8999999999999999999999998877 9999999999996
No 25
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.98 E-value=1.2e-31 Score=190.63 Aligned_cols=118 Identities=25% Similarity=0.310 Sum_probs=98.8
Q ss_pred hhhhHHHhcCCCCCeeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccccCCCCCCCCC---CcceeeeeccccCCC
Q psy1145 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGA---RRGAVGMRRIKKTSE 78 (138)
Q Consensus 2 ~~NF~~L~~g~~~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~~~~~---h~G~lsm~~~~~~~~ 78 (138)
|+||++||+++ + |+++.|||++|+++||+||+......+ +.++..+ ++|..... .+|+|+|++.++
T Consensus 22 ~~nF~~l~~~~---~-Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~--~~E~~~~~~~~~~G~v~~~~~~~--- 90 (146)
T cd00317 22 VENFLSLARGG---F-YDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKF--PDENFPLKYHHRRGTLSMANAGP--- 90 (146)
T ss_pred HHHHHHHHhcC---C-cCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCcc--CCccccCcCcCCCcEEEEeeCCC---
Confidence 79999999844 5 999999999999999999976554332 3455555 77766432 389999998765
Q ss_pred CCCcceeeEEEEecC---CCCCCeEEEEEEcCHHHHHHHhcCCC-CCCCcccceEEee
Q psy1145 79 NKGLVGSQFRIILNH---QKQFTGIFGQVIYGLEYIDAISTYSN-AQGQPTERFYISN 132 (138)
Q Consensus 79 ~~~~~~SqF~Itl~~---ld~~~~vfG~Vv~G~~vl~~i~~~~~-~~~~P~~~v~I~~ 132 (138)
++++|||||++.+ ||++|+|||||++||++|++|++.++ ++++|.++|+|.+
T Consensus 91 --~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 91 --NTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred --CCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 5889999999974 89999999999999999999999998 5899999999974
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.97 E-value=1.4e-30 Score=191.17 Aligned_cols=108 Identities=24% Similarity=0.278 Sum_probs=83.1
Q ss_pred hhhhHHHhcCCCCCeeecCCEEEEEeCCcEEEeCCCCCCC-C-------------------CCcccccccccc---CCCC
Q psy1145 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGD-K-------------------TEGRSVFVQEYF---RPDE 58 (138)
Q Consensus 2 ~~NF~~L~~g~~~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~-~-------------------~g~~si~g~~~~---~~~e 58 (138)
|+||++||+ +++ |+++.||||+|+|+||+||+.... + ..+.++|+..+. ..++
T Consensus 22 ~~NF~~L~~---~g~-Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~~~~~~~~~~~~~~~~ 97 (176)
T cd01924 22 AGNFVDLVE---RGF-YDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQPVYGKTLEEAGRYDE 97 (176)
T ss_pred HHHHHHHHH---hCC-cCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCCCccCccccccccccc
Confidence 789999998 667 999999999999999999976431 0 123345554431 0133
Q ss_pred CC-CCCC-cceeeeeccccCCCCCCcceeeEEEEec-------C---CCCCCeEEEEEEcCHHHHHHHhc
Q psy1145 59 SH-LGAR-RGAVGMRRIKKTSENKGLVGSQFRIILN-------H---QKQFTGIFGQVIYGLEYIDAIST 116 (138)
Q Consensus 59 ~~-~~~h-~G~lsm~~~~~~~~~~~~~~SqF~Itl~-------~---ld~~~~vfG~Vv~G~~vl~~i~~ 116 (138)
.. .+.| +|+||||+.+. .|++++|||||++. + ||++|+|||||++|||||++|+.
T Consensus 98 ~~~~~~~~~G~laMa~~~~---~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I~~ 164 (176)
T cd01924 98 QPVLPFNAFGAIAMARTEF---DPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELKV 164 (176)
T ss_pred ccccccCCCCeEEEccCCC---CCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhhcC
Confidence 33 2333 89999998763 24899999999997 3 89999999999999999999975
No 27
>KOG0415|consensus
Probab=99.97 E-value=2.5e-30 Score=203.29 Aligned_cols=126 Identities=25% Similarity=0.294 Sum_probs=108.1
Q ss_pred hhhhHHHhcCCCCCeeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccc-----cCCCC-CCCCCC--cceeeeecc
Q psy1145 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEY-----FRPDE-SHLGAR--RGAVGMRRI 73 (138)
Q Consensus 2 ~~NF~~L~~g~~~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~-----~~~~e-~~~~~h--~G~lsm~~~ 73 (138)
|.||++||+- .| |+.|.||.|..+|.+|.||++ +.|.||.|||+..+ +|++| .+.++| .|+|||++.
T Consensus 25 clNFLKLCk~---KY-YN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q~rffeaE~~p~l~Hsk~G~vsmvs~ 99 (479)
T KOG0415|consen 25 CLNFLKLCKI---KY-YNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQARFFEAEFLPKLKHSKMGTVSMVSA 99 (479)
T ss_pred HHHHHHHHhH---hh-cccceeeeccccceeecCCCC-CCCCCcceeeeecccccchhhhhhhcccccccccceEEeecC
Confidence 7899999984 36 999999999999999999965 69999999986432 12444 335667 699999999
Q ss_pred ccCCCCCCcceeeEEEEecC----CCCCCeEEEEEEcCHHHHHHHh-cCCCCCCCcccceEEeeeeEec
Q psy1145 74 KKTSENKGLVGSQFRIILNH----QKQFTGIFGQVIYGLEYIDAIS-TYSNAQGQPTERFYISNCGKWE 137 (138)
Q Consensus 74 ~~~~~~~~~~~SqF~Itl~~----ld~~~~vfG~Vv~G~~vl~~i~-~~~~~~~~P~~~v~I~~cg~l~ 137 (138)
+. |.+||||||||++ ||++|+|||+|++|||+|.+|+ ++.+++++|+++|+|.+.-+|.
T Consensus 100 g~-----n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTiiLd 163 (479)
T KOG0415|consen 100 GE-----NLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTIILD 163 (479)
T ss_pred Cc-----ccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeEEec
Confidence 87 7999999999996 8999999999999999999997 5567899999999999987764
No 28
>KOG0885|consensus
Probab=99.95 E-value=5.4e-28 Score=190.92 Aligned_cols=123 Identities=28% Similarity=0.327 Sum_probs=107.2
Q ss_pred hhhhHHHhcCCCCCeeecCCEEEEEeCCcEEEeCCCCCCCCCCccccccccccCCCCCCC-C--CCcceeeeeccccCCC
Q psy1145 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL-G--ARRGAVGMRRIKKTSE 78 (138)
Q Consensus 2 ~~NF~~L~~g~~~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~~si~g~~~~~~~e~~~-~--~h~G~lsm~~~~~~~~ 78 (138)
|.||++||. .|+ |+|+.|||++|+|.+||||+ .++|+||.||||.+| ++|.+. + .++|+|+||+.+.
T Consensus 37 crnFiqKOG---egy-y~nt~fhrlvp~f~~Qggdp-~~~gtGgesiyg~~f--adE~h~Rlrf~rrGlvgmana~~--- 106 (439)
T KOG0885|consen 37 CRNFIQLCL---EGY-YDNTEFHRLVPGFLVQGGDP-TGTGTGGESIYGRPF--ADEFHPRLRFNRRGLVGMANAGN--- 106 (439)
T ss_pred HHHHHHHHH---hcc-ccCceeeeeccchhcccCCC-CCCCCCccccccccc--hhhcCcceeeeccceeeecccCC---
Confidence 899999998 677 99999999999999999995 589999999999998 888663 3 3689999999886
Q ss_pred CCCcceeeEEEEecC---CCCCCeEEEEEEc-CHHHHHHHhcCCC-CCCCcccceEEeeeeEe
Q psy1145 79 NKGLVGSQFRIILNH---QKQFTGIFGQVIY-GLEYIDAISTYSN-AQGQPTERFYISNCGKW 136 (138)
Q Consensus 79 ~~~~~~SqF~Itl~~---ld~~~~vfG~Vv~-G~~vl~~i~~~~~-~~~~P~~~v~I~~cg~l 136 (138)
+.||||||+||++ ++++|++||+|+. -.=.+-+|..+.+ .+.+|..+.+|.+|-++
T Consensus 107 --~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~ 167 (439)
T KOG0885|consen 107 --DDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVL 167 (439)
T ss_pred --CCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEee
Confidence 6889999999996 8999999999995 4555666877776 57899999999999876
No 29
>KOG0882|consensus
Probab=96.69 E-value=0.0022 Score=53.22 Aligned_cols=121 Identities=14% Similarity=0.081 Sum_probs=81.1
Q ss_pred hhhHHHhcCCCCCeeecCCEEEEEeCCcEEEeCCCCCCCCCCc----cccccccccCCC--CCCCCCC-cceeeeecccc
Q psy1145 3 TNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEG----RSVFVQEYFRPD--ESHLGAR-RGAVGMRRIKK 75 (138)
Q Consensus 3 ~NF~~L~~g~~~g~~Y~gt~f~ri~~~~~iq~Gd~~~~~~~g~----~si~g~~~~~~~--e~~~~~h-~G~lsm~~~~~ 75 (138)
+-|..+|. .++ +++..|.+|...+++|.||.......+| |+..+ +|.+++ .++.++| .-++.......
T Consensus 128 D~~~d~~q---~~~-fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt 202 (558)
T KOG0882|consen 128 DGFGDFCQ---DGY-FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKT 202 (558)
T ss_pred CCcCCcCc---cce-ecccccCceEEEEeeccccceeeccccceeEeecCCC-cccCccccccccccccchhhccccccc
Confidence 34455554 334 8999999999999999999543322222 23222 333344 3556777 46666654432
Q ss_pred CCCCCCcceeeEEEEecC---CCCCCeEEEEEEcCHHHHHHHhcCCC-CCCCcccceEEeee
Q psy1145 76 TSENKGLVGSQFRIILNH---QKQFTGIFGQVIYGLEYIDAISTYSN-AQGQPTERFYISNC 133 (138)
Q Consensus 76 ~~~~~~~~~SqF~Itl~~---ld~~~~vfG~Vv~G~~vl~~i~~~~~-~~~~P~~~v~I~~c 133 (138)
.-.+-+|++.-.. +..+..|||++..+-++++.|.+..+ .+..|..++.|.+.
T Consensus 203 -----~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~V 259 (558)
T KOG0882|consen 203 -----EPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHV 259 (558)
T ss_pred -----CccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccccee
Confidence 1234578887764 56788999999999999999988776 66678888777654
No 30
>PRK00969 hypothetical protein; Provisional
Probab=93.99 E-value=0.064 Score=45.23 Aligned_cols=60 Identities=23% Similarity=0.256 Sum_probs=45.8
Q ss_pred ccccccccCCCCCCCCCCcceeeeeccccCCCCCCcceeeEEEEecC--CCCCCeEEEEEEcCHHHHHHHh
Q psy1145 47 SVFVQEYFRPDESHLGARRGAVGMRRIKKTSENKGLVGSQFRIILNH--QKQFTGIFGQVIYGLEYIDAIS 115 (138)
Q Consensus 47 si~g~~~~~~~e~~~~~h~G~lsm~~~~~~~~~~~~~~SqF~Itl~~--ld~~~~vfG~Vv~G~~vl~~i~ 115 (138)
++.|... +.|++....+|+|++.+.|. . .-.-||--.+ .--.|+|+|+|++||++++--+
T Consensus 244 ~L~g~~~--p~En~~~R~~GtVTVRt~G~------g-~G~vYIyredr~ss~sHtvVG~V~~GiELi~~a~ 305 (508)
T PRK00969 244 RLQGLKI--PEENFEPRRRGTVTVRTAGV------G-VGKVYIYREDRPSSLSHTVVGRVTHGIELIDFAK 305 (508)
T ss_pred cccCccC--CccccCccccceEEEEeecc------C-ceeEEEECCCCCCCccceeEEEEecceeeeeccc
Confidence 4455555 88888888899999998875 2 2357888776 3456999999999999998543
No 31
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=93.77 E-value=0.081 Score=44.58 Aligned_cols=60 Identities=27% Similarity=0.296 Sum_probs=45.4
Q ss_pred ccccccccCCCCCCCCCCcceeeeeccccCCCCCCcceeeEEEEecC--CCCCCeEEEEEEcCHHHHHHHh
Q psy1145 47 SVFVQEYFRPDESHLGARRGAVGMRRIKKTSENKGLVGSQFRIILNH--QKQFTGIFGQVIYGLEYIDAIS 115 (138)
Q Consensus 47 si~g~~~~~~~e~~~~~h~G~lsm~~~~~~~~~~~~~~SqF~Itl~~--ld~~~~vfG~Vv~G~~vl~~i~ 115 (138)
++.+... +.|+.....+|+|.+.+.|. . .-.-||--.+ .--.|+|+|||++||++++--+
T Consensus 241 ~L~g~~~--p~En~~~R~rGtVTVRn~G~------G-~G~VYIYredr~ss~sHtvVG~V~~GiELid~a~ 302 (503)
T TIGR03268 241 SLRGLDK--PEENIEKRRRGAVTVRNSGV------G-EGRVYIYREDRPSSLSHNVVGHVTRGIELIDIAQ 302 (503)
T ss_pred cccCccC--CccccCcccceeEEEEeecc------C-ceeEEEEcCCCCCCcccceeEEEecceeeeeccc
Confidence 3445555 88888888899999998875 2 2357887776 3457999999999999998543
No 32
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=90.95 E-value=0.13 Score=42.42 Aligned_cols=60 Identities=23% Similarity=0.333 Sum_probs=44.3
Q ss_pred ccccccccCCCCCCCCCCcceeeeeccccCCCCCCcceeeEEEEecC--CCCCCeEEEEEEcCHHHHHHHh
Q psy1145 47 SVFVQEYFRPDESHLGARRGAVGMRRIKKTSENKGLVGSQFRIILNH--QKQFTGIFGQVIYGLEYIDAIS 115 (138)
Q Consensus 47 si~g~~~~~~~e~~~~~h~G~lsm~~~~~~~~~~~~~~SqF~Itl~~--ld~~~~vfG~Vv~G~~vl~~i~ 115 (138)
++...+. ++|++.+..+|+++..|.+- ..-.-||--.+ .--.|.|+|||++||++++-.+
T Consensus 243 ~lq~~~~--~~en~d~RerG~iTvRn~Gv-------geGrvYIyRedR~ss~sHnvVGrV~eGiELid~a~ 304 (512)
T COG4070 243 TLQEEKV--PEENFDLRERGAITVRNVGV-------GEGRVYIYREDRPSSLSHNVVGRVIEGIELIDLAE 304 (512)
T ss_pred ccccccC--ChhhhhhhhcceEEEEeeec-------ccceEEEEecCCCCccccceeeeeecceEEEEecc
Confidence 3444444 78899888899999998764 12357777664 4457899999999999988543
No 33
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=60.12 E-value=21 Score=30.52 Aligned_cols=47 Identities=19% Similarity=0.114 Sum_probs=31.3
Q ss_pred cceeeeeccccCCCCCCcceeeEEEEecC------CCCCCeEEEEEEcCHHHHHHHhc
Q psy1145 65 RGAVGMRRIKKTSENKGLVGSQFRIILNH------QKQFTGIFGQVIYGLEYIDAIST 116 (138)
Q Consensus 65 ~G~lsm~~~~~~~~~~~~~~SqF~Itl~~------ld~~~~vfG~Vv~G~~vl~~i~~ 116 (138)
++-|.+.-.+- +...+.+.|+..+ ++...-+|||||.|..+|+++..
T Consensus 112 r~DV~lg~~G~-----d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~vl~~L~~ 164 (503)
T TIGR03268 112 RWDVILSLSGF-----DPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRVIDRLSD 164 (503)
T ss_pred cccEEEEccCC-----CCCCceEEEEecchhhhhCCCCCCCEEEEEccchhhHhhccC
Confidence 46666655544 2234456666654 23356899999999999999864
No 34
>PRK00969 hypothetical protein; Provisional
Probab=56.99 E-value=22 Score=30.40 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=28.9
Q ss_pred cceeeeeccccCCCCCCcceeeEEEEecC------CCCCCeEEEEEEcCHHHHHHHhc
Q psy1145 65 RGAVGMRRIKKTSENKGLVGSQFRIILNH------QKQFTGIFGQVIYGLEYIDAIST 116 (138)
Q Consensus 65 ~G~lsm~~~~~~~~~~~~~~SqF~Itl~~------ld~~~~vfG~Vv~G~~vl~~i~~ 116 (138)
++-|.+.-.+- +...+.+.|+..+ +.. --+|||||.|..+|+++..
T Consensus 116 r~DV~lg~~G~-----dp~~thLIfsk~~h~a~YG~p~-~gv~grVi~Gk~vl~~L~~ 167 (508)
T PRK00969 116 RWDVVLSLSGF-----DPSETHLIFSKRDHSADYGAPN-DGVIGRVVGGKRVLDRLTD 167 (508)
T ss_pred cccEEEEccCC-----CCCCceEEEEecchhhhhCCCC-CCceEEEccchhhHhhccC
Confidence 45566654443 1223445555544 222 2899999999999999965
No 35
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=39.30 E-value=30 Score=20.25 Aligned_cols=27 Identities=7% Similarity=0.161 Sum_probs=19.5
Q ss_pred EcCHHHHHHHhcCCCCCCCcccceEEee
Q psy1145 105 IYGLEYIDAISTYSNAQGQPTERFYISN 132 (138)
Q Consensus 105 v~G~~vl~~i~~~~~~~~~P~~~v~I~~ 132 (138)
+.|.+||+++.+. .....+..+|+.++
T Consensus 4 ~sGv~vlRel~r~-~~~~~~~~PVVFTS 30 (58)
T PF08415_consen 4 FSGVEVLRELARR-GGGRAAVMPVVFTS 30 (58)
T ss_pred ccHHHHHHHHHHh-cCCCCCcCCEEEeC
Confidence 4689999999887 44555666776654
No 36
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=36.22 E-value=24 Score=24.57 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=17.3
Q ss_pred cCHHHH-HHHhcCCC---CCCCcccceEEeeee
Q psy1145 106 YGLEYI-DAISTYSN---AQGQPTERFYISNCG 134 (138)
Q Consensus 106 ~G~~vl-~~i~~~~~---~~~~P~~~v~I~~cg 134 (138)
.||||| ++|.++.+ .+.++...+.|+..+
T Consensus 18 ~Gmdvln~AI~~l~~~~~~~~w~~V~vsvaps~ 50 (124)
T cd01271 18 TGMEILNSAIDNLMSSSNKEDWLSVNVNVAPST 50 (124)
T ss_pred ccHHHHHHHHHHHHhcCCcccCceEEEEeCCce
Confidence 399999 77777653 333455555555444
No 37
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=27.30 E-value=69 Score=22.95 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.3
Q ss_pred eEEEEEEcCHHHHHHHhc
Q psy1145 99 GIFGQVIYGLEYIDAIST 116 (138)
Q Consensus 99 ~vfG~Vv~G~~vl~~i~~ 116 (138)
.+|++|++|+|-|.++-+
T Consensus 113 N~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 113 NHFATITEGLEELAEACR 130 (147)
T ss_dssp EEEEEEEESHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHH
Confidence 689999999998877753
Done!