RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1145
(138 letters)
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 51.6 bits (124), Expect = 7e-09
Identities = 41/158 (25%), Positives = 55/158 (34%), Gaps = 39/158 (24%)
Query: 2 ATNFELLTIGEF-------PGLSYRNCALSQLWQFESIIT------GSFRYGDKTEGRSV 48
A NF L GE L ++ C F II G F + T G S+
Sbjct: 45 AENFRALCTGEKGIGPTTGKPLHFKGC------PFHRIIKKFMIQGGDFSNQNGTGGESI 98
Query: 49 FVQEYFRPDE----SHLGARRGAVGMRRIKKTSENKG--LVGSQFRIILNHQKQFTG--- 99
+ E F DE H G + M N G GSQF I G
Sbjct: 99 Y-GEKF-EDENFHYKHDKE--GLLSM-------ANAGSNTNGSQFFITTVPTPHLDGKHV 147
Query: 100 IFGQVIYGLEYIDAISTYSNAQGQPTERFYISNCGKWE 137
+FGQVI G+ + +P + I+ CG+ +
Sbjct: 148 VFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELK 185
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic,
inhibito isomerase-isomerase inhibitor complex; HET:
EA4; 2.14A {Homo sapiens}
Length = 184
Score = 41.8 bits (99), Expect = 1e-05
Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 33/148 (22%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIIT------GSFRYGDKTEGRSVFVQEYFR 55
A NF L+ GE G Y+ F II G F + T G+S++ E F
Sbjct: 52 AENFRALSTGE-KGFGYKGSC------FHRIIPGFMCQGGDFTRHNGTGGKSIY-GEKF- 102
Query: 56 PDES----HLGARRGAVGMRRIKKTSENKGLV--GSQFRIILNHQKQFTG---IFGQVIY 106
DE+ H G G + M N G GSQF I + G +FG+V
Sbjct: 103 EDENFILKHTGP--GILSM-------ANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKE 153
Query: 107 GLEYIDAISTYSNAQGQPTERFYISNCG 134
G+ ++A+ + + G+ +++ I++CG
Sbjct: 154 GMNIVEAMERFGSRNGKTSKKITIADCG 181
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin D; HET: BMT MLE
CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A*
3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A*
3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A*
2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Length = 165
Score = 40.2 bits (95), Expect = 4e-05
Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 33/148 (22%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIIT------GSFRYGDKTEGRSVFVQEYFR 55
A NF L GE G Y+ F +I G F + T G+S++ F
Sbjct: 33 AENFRALCTGE-KGFGYKGST------FHRVIPSFMCQAGDFTNHNGTGGKSIY-GSRF- 83
Query: 56 PDES----HLGARRGAVGMRRIKKTSENKGLV--GSQFRIILNHQKQFTG---IFGQVIY 106
PDE+ H+G G + M N G GSQF I G +FG VI
Sbjct: 84 PDENFTLKHVGP--GVLSM-------ANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIE 134
Query: 107 GLEYIDAISTYSNAQGQPTERFYISNCG 134
G++ + I ++ + G+ +++ I++CG
Sbjct: 135 GMDVVKKIESFGSKSGRTSKKIVITDCG 162
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase,
isomerase-immunosuppressant compl; HET: BMT; 1.47A
{Moniliophthora perniciosa} PDB: 3o7t_A
Length = 164
Score = 40.2 bits (95), Expect = 4e-05
Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 33/148 (22%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIIT------GSFRYGDKTEGRSVFVQEYFR 55
A NF L G+ G Y++ F +I G F + T G+S++ E F
Sbjct: 32 AKNFRELATGQ-HGFGYKDSI------FHRVIPQFMLQGGDFTRHNGTGGKSIY-GEKF- 82
Query: 56 PDES----HLGARRGAVGMRRIKKTSENKGLV--GSQFRIILNHQKQFTG---IFGQVIY 106
DE+ H G + M N G GSQF I G +FG+VI
Sbjct: 83 ADENFQVKHTKP--GLLSM-------ANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIE 133
Query: 107 GLEYIDAISTYSNAQGQPTERFYISNCG 134
GL+ + + +A G+ I++CG
Sbjct: 134 GLDIVRKVEGKGSASGKTNATIKITDCG 161
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization,
structural genomics consortium, SGC, alternative
splicing, mRNA processing; 1.61A {Homo sapiens} SCOP:
b.62.1.1 PDB: 3uch_A 1zmf_A
Length = 173
Score = 39.8 bits (94), Expect = 5e-05
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 33/148 (22%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIIT------GSFRYGDKTEGRSVFVQEYFR 55
A NF L E G ++ + F II G F + T G+S++ + F
Sbjct: 41 AENFRCLCTHE-KGFGFKGSS------FHRIIPQFMCQGGDFTNHNGTGGKSIY-GKKF- 91
Query: 56 PDES----HLGARRGAVGMRRIKKTSENKGLV--GSQFRIILNHQKQFTG---IFGQVIY 106
DE+ H G G + M N G GSQF + + G +FG+V
Sbjct: 92 DDENFILKHTGP--GLLSM-------ANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTE 142
Query: 107 GLEYIDAISTYSNAQGQPTERFYISNCG 134
GL+ + I + G+P ++ I++CG
Sbjct: 143 GLDVLRQIEAQGSKDGKPKQKVIIADCG 170
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase,
RNA-binding, cyclosporin, cyclophilin, beta-barrel;
1.50A {Schistosoma mansoni} PDB: 2ck1_A
Length = 172
Score = 39.8 bits (94), Expect = 6e-05
Identities = 44/148 (29%), Positives = 58/148 (39%), Gaps = 33/148 (22%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIIT------GSFRYGDKTEGRSVFVQEYFR 55
A NF L GE G Y NC F +I G F GD T G+S++ F
Sbjct: 40 AENFRALCTGE-RGFGYHNCC------FHRVIPQFMCQGGDFVKGDGTGGKSIY-GRKF- 90
Query: 56 PDES----HLGARRGAVGMRRIKKTSENKGLV--GSQFRIILNHQKQFTG---IFGQVIY 106
DE+ H G G + M N G GSQF I G +FG+V+
Sbjct: 91 DDENFQLRHEGF--GVLSM-------ANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVD 141
Query: 107 GLEYIDAISTYSNAQGQPTERFYISNCG 134
G + + + + G+ E IS CG
Sbjct: 142 GQNVVKKMESVGSKSGKVKEPVIISRCG 169
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin,
peptidyl-prolyl-CIS/trans isomerase, spliceosome,
U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
SCOP: b.62.1.1 PDB: 1qoi_A
Length = 177
Score = 39.8 bits (94), Expect = 7e-05
Identities = 39/153 (25%), Positives = 55/153 (35%), Gaps = 37/153 (24%)
Query: 2 ATNFELLTIGEFP----GLSYRNCALSQLWQFESIIT------GSFRYGDKTEGRSVFVQ 51
A NF GEF + Y+ F +I G F GD T S++ +
Sbjct: 40 AENFRQFCTGEFRKDGVPIGYKGST------FHRVIKDFMIQGGDFVNGDGTGVASIY-R 92
Query: 52 EYFRPDES----HLGARRGAVGMRRIKKTSENKG--LVGSQFRIILNHQKQFTG---IFG 102
F DE+ H G + M N G G QF I + G +FG
Sbjct: 93 GPF-ADENFKLRHSAP--GLLSM-------ANSGPSTNGCQFFITCSKCDWLDGKHVVFG 142
Query: 103 QVIYGLEYIDAI-STYSNAQGQPTERFYISNCG 134
++I GL + I + + +P IS CG
Sbjct: 143 KIIDGLLVMRKIENVPTGPNNKPKLPVVISQCG 175
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 39.6 bits (93), Expect = 8e-05
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 22/107 (20%)
Query: 40 GDKTEGRSVFVQEY---FRPDESHLGARRGAVGMRRIKKTSENKGLV------GSQFRII 90
G G S++ + + P+ + RRG + M +KG GSQF I
Sbjct: 74 GTGKGGESIYGRYFDDEIYPELKY--DRRGILSM-------ASKGASKKPNTNGSQFFIT 124
Query: 91 LNHQKQFTG---IFGQVIYGLEYIDAI-STYSNAQGQPTERFYISNC 133
+ Q G IFG++I G E ++ + + S+ +P + I +
Sbjct: 125 YSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDI 171
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin,
endoplasmic reticulum, glycoprot isomerase, rotamase;
1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A*
2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Length = 188
Score = 39.1 bits (92), Expect = 1e-04
Identities = 46/149 (30%), Positives = 66/149 (44%), Gaps = 34/149 (22%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIIT------GSFRYGDKTEGRSVFVQEYFR 55
NF L GE G Y+N F +I G F GD T G+S++ E F
Sbjct: 45 VDNFVALATGE-KGFGYKNSK------FHRVIKDFMIQGGDFTRGDGTGGKSIY-GERF- 95
Query: 56 PDES----HLGARRGAVGMRRIKKTSENKGLV--GSQFRIILNHQKQFTG---IFGQVIY 106
PDE+ H G G V M N G GSQF I G +FG+V+
Sbjct: 96 PDENFKLKHYGP--GWVSM-------ANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLE 146
Query: 107 GLEYIDAI-STYSNAQGQPTERFYISNCG 134
G+E + + ST ++++ +P + I++CG
Sbjct: 147 GMEVVRKVESTKTDSRDKPLKDVIIADCG 175
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, cyclophilin-cyclosporin complex,
immunosuppressant, cyclophilin; HET: BMT; 2.1A
{Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Length = 170
Score = 37.5 bits (88), Expect = 4e-04
Identities = 38/153 (24%), Positives = 52/153 (33%), Gaps = 37/153 (24%)
Query: 2 ATNFELLTIGE-----FPGLSYRNCALSQLWQFESIIT------GSFRYGDKTEGRSVFV 50
NF L GE L Y+N F II G G+ + G S++
Sbjct: 33 CENFRALCTGEKIGSRGKNLHYKNSI------FHRIIPQFMCQGGDITNGNGSGGESIY- 85
Query: 51 QEYFRPDES----HLGARRGAVGMRRIKKTSENKGLV--GSQFRIILNHQKQFTG---IF 101
F DE+ H G + M N G SQF I L G +F
Sbjct: 86 GRSF-TDENFNMKHDQP--GLLSM-------ANAGPNTNSSQFFITLVPCPWLDGKHVVF 135
Query: 102 GQVIYGLEYIDAISTYSNAQGQPTERFYISNCG 134
G+VI G+ + + G I++CG
Sbjct: 136 GKVIEGMNVVREMEKEGAKSGYVKRSVVITDCG 168
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA
splicing, alternative splicing, nucleus, rotamase,
cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A*
2gw2_A
Length = 179
Score = 36.7 bits (86), Expect = 6e-04
Identities = 41/156 (26%), Positives = 58/156 (37%), Gaps = 40/156 (25%)
Query: 2 ATNFELLTIGEF-------PGLSYRNCALSQLWQFESIIT------GSFRYGDKTEGRSV 48
NF L GE L Y++C F ++ G F G+ G S+
Sbjct: 39 CENFRCLCTGEKGTGKSTQKPLHYKSCL------FHRVVKDFMVQGGDFSEGNGRGGESI 92
Query: 49 FVQEYFRPDES----HLGARRGAVGMRRIKKTSENKG--LVGSQFRIILNHQKQFTG--- 99
+ +F DES H + M N+G GSQF I G
Sbjct: 93 Y-GGFF-EDESFAVKHNKE--FLLSM-------ANRGKDTNGSQFFITTKPTPHLDGHHV 141
Query: 100 IFGQVIYGLEYIDAI-STYSNAQGQPTERFYISNCG 134
+FGQVI G E + I + ++A +P I +CG
Sbjct: 142 VFGQVISGQEVVREIENQKTDAASKPFAEVRILSCG 177
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP:
b.62.1.1 PDB: 1a33_A 1c5f_A*
Length = 177
Score = 36.7 bits (86), Expect = 7e-04
Identities = 41/156 (26%), Positives = 54/156 (34%), Gaps = 40/156 (25%)
Query: 2 ATNFELLTIGEF-------PGLSYRNCALSQLWQFESIIT------GSFRYGDKTEGRSV 48
NF +L G L Y+ F +I G F GD T G S+
Sbjct: 36 CNNFLMLCTGMAGTGKISGKPLHYKGST------FHRVIKNFMIQGGDFTKGDGTGGESI 89
Query: 49 FVQEYFRPDES----HLGARRGAVGMRRIKKTSENKG--LVGSQFRIILNHQKQFTG--- 99
+ F DE H V M NKG GSQF I
Sbjct: 90 Y-GGMF-DDEEFVMKHDEP--FVVSM-------ANKGPNTNGSQFFITTTPAPHLNNIHV 138
Query: 100 IFGQVIYGLEYIDAI-STYSNAQGQPTERFYISNCG 134
+FG+V+ G E + I +N++ +P I NCG
Sbjct: 139 VFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCG 174
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans
isomerization, peptidylprolyl isomerase, protein-
folding, structural genomics consortium; 1.65A {Homo
sapiens} SCOP: b.62.1.1
Length = 197
Score = 36.6 bits (85), Expect = 9e-04
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 17/83 (20%)
Query: 40 GDKTEGRSVFVQEY---FRPDESHLGARRGAVGMRRIKKTSENKG--LVGSQFRIILNHQ 94
G T G S + + + FRP+ SH RG + M N G SQF I
Sbjct: 77 GTGTGGESYWGKPFKDEFRPNLSH--TGRGILSM-------ANSGPNSNRSQFFITFRSC 127
Query: 95 KQFTG---IFGQVIYGLEYIDAI 114
IFG+V+ G + + A+
Sbjct: 128 AYLDKKHTIFGRVVGGFDVLTAM 150
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 36.5 bits (85), Expect = 0.001
Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 25/118 (21%)
Query: 34 TGSFRYGDKTE----GRSVFVQEYFRP-----DESHLG---ARRGAVGMRRIKKTSENKG 81
G ++ +S F DE G + M N G
Sbjct: 59 GGRAELRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSM-------ANDG 111
Query: 82 --LVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAI-STYSNAQGQPTERFYISNC 133
S+F I + IFG+V+ GL+ + ++ + +P + +
Sbjct: 112 KHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEI 169
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa,
KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A*
3bt8_A
Length = 172
Score = 36.4 bits (85), Expect = 0.001
Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 29/146 (19%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIIT------GSFRYGDKTEGRSVFVQEYFR 55
NF L GE G Y++ F +I G F D T G+S++ E F
Sbjct: 41 TENFRQLCTGE-HGFGYKDSI------FHRVIQNFMIQGGDFTNFDGTGGKSIY-GEKF- 91
Query: 56 PDES-HLGARRGAVGMRRIKKTSENKGLV--GSQFRIILNHQKQFTG---IFGQVIYGLE 109
DE+ ++ GA+ M N G GSQF I G +FG+V+ G++
Sbjct: 92 ADENLNVKHFVGALSM-------ANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMD 144
Query: 110 YIDAI-STYSNAQGQPTERFYISNCG 134
+ I T +N+ +P + I G
Sbjct: 145 VVLRIEKTKTNSHDRPVKPVKIVASG 170
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix,
disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1
PDB: 1xyh_A 2oju_A*
Length = 161
Score = 36.0 bits (84), Expect = 0.001
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 17/84 (20%)
Query: 40 GDKTEGRSVFVQEY---FRPDESHLGARRGAVGMRRIKKTSENKG--LVGSQFRIILNHQ 94
G G S++ +++ + H RG V M N G GSQF I Q
Sbjct: 58 GTGRGGNSIWGKKFEDEYSEYLKH--NVRGVVSM-------ANNGPNTNGSQFFITYGKQ 108
Query: 95 KQFTG---IFGQVIYGLEYIDAIS 115
+FG+VI GLE +D +
Sbjct: 109 PHLDMKYTVFGKVIDGLETLDELE 132
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A
{Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A
1e8k_A 1dyw_A 2igw_A 2hqj_A
Length = 173
Score = 35.9 bits (84), Expect = 0.001
Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 38/158 (24%)
Query: 2 ATNFELLTIGE------FPGLSYRNCALSQLWQFESIIT------GSFRYGDKTEGRSVF 49
A NF L GE L ++ F II G F G+ T G S++
Sbjct: 33 AGNFRALCTGENGIGKSGKPLHFKGSK------FHRIIPNFMIQGGDFTRGNGTGGESIY 86
Query: 50 VQEYFRPDES----HLGARRGAVGMRRIKKTSENKGLV--GSQFRIILNHQKQFTG---I 100
E F PDE+ H G G + M N G GSQF + + G +
Sbjct: 87 -GEKF-PDENFKEKHTGP--GVLSM-------ANAGPNTNGSQFFLCTVKTEWLDGKHVV 135
Query: 101 FGQVIYGLEYIDAISTYSNAQGQPTERFYISNCGKWEG 138
FG+V+ GL+ + A+ + + G+P + I++CG+ +
Sbjct: 136 FGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQLKA 173
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A
{Mimivirus}
Length = 234
Score = 35.9 bits (83), Expect = 0.002
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Query: 84 GSQFRIILNHQKQFTG---------IFGQVIYGLEYIDAI-STYSNAQGQPTERFYISNC 133
S F I L+ + + GQV GL+ +D I S G+ F I C
Sbjct: 144 DSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKC 203
Query: 134 G 134
G
Sbjct: 204 G 204
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane,
repeat, rotamase, peptidylprolyl isomerase, structural
genomics; 2.00A {Homo sapiens}
Length = 192
Score = 35.7 bits (83), Expect = 0.002
Identities = 40/156 (25%), Positives = 57/156 (36%), Gaps = 40/156 (25%)
Query: 2 ATNFELLTIGEF-------PGLSYRNCALSQLWQFESIIT------GSFRYGDKTEGRSV 48
NF L GE L Y+ F ++ G F G+ G S+
Sbjct: 49 CKNFLCLCSGEKGLGKTTGKKLCYKGST------FHRVVKNFMIQGGDFSEGNGKGGESI 102
Query: 49 FVQEYFRPDES----HLGARRGAVGMRRIKKTSENKG--LVGSQFRIILNHQKQFTG--- 99
+ YF DE+ H A + M N+G GSQF I G
Sbjct: 103 Y-GGYF-KDENFILKHDRA--FLLSM-------ANRGKHTNGSQFFITTKPAPHLDGVHV 151
Query: 100 IFGQVIYGLEYIDAI-STYSNAQGQPTERFYISNCG 134
+FG VI G E I+ I + ++A +P + +CG
Sbjct: 152 VFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCG 187
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW,
decode, cytoplasm, rotamase, structural genomics; HET:
PG5; 1.95A {Encephalitozoon cuniculi}
Length = 193
Score = 35.3 bits (82), Expect = 0.002
Identities = 42/150 (28%), Positives = 59/150 (39%), Gaps = 35/150 (23%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIIT------GSFRYGDKTEGRSVFVQEYFR 55
A NF L G Y+ F II G + + T GRS++ E F
Sbjct: 57 AKNFRTLCERP-KGEGYKGST------FHRIIPGFMVQGGDYTAHNGTGGRSIY-GEKF- 107
Query: 56 PDES----HLGARRGAVGMRRIKKTSENKGLV--GSQFRIILNHQKQFTG---IFGQVIY 106
PDE+ H G + M N G GSQF I L + +FG+V+
Sbjct: 108 PDENFELKHTKE--GILSM-------ANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVE 158
Query: 107 GLEYIDAISTYSNAQGQ--PTERFYISNCG 134
G++ + I+ Y + GQ R I +CG
Sbjct: 159 GMDVVHKIAKYGSESGQVKKGYRIEIRDCG 188
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics
consortium, SGC, isomerase; 2.50A {Plasmodium yoelii}
SCOP: b.62.1.1
Length = 196
Score = 35.0 bits (81), Expect = 0.003
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 18/103 (17%)
Query: 40 GDKTEGRSVFVQEY---FRPDESHLGARRGAVGMRRIKKTSENKG--LVGSQFRIILNHQ 94
G G+S++ + + + H G + M N G SQF I L
Sbjct: 96 GTGKGGKSIYGEYFEDEINKELKH--TGAGILSM-------SNNGPNTNSSQFFITLAPL 146
Query: 95 KQFTG---IFGQVIYGLEYIDAIS-TYSNAQGQPTERFYISNC 133
G IF +V + I+ I+ + A +P I
Sbjct: 147 PHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRT 189
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 35.0 bits (80), Expect = 0.004
Identities = 9/63 (14%), Positives = 19/63 (30%), Gaps = 15/63 (23%)
Query: 65 RGAVGMRRIKKTSENKGLVGSQFRIILNHQK-----------QFTGIFGQVIYGLEYIDA 113
G + M R SQ +L + ++ +FG V +++
Sbjct: 286 FGTMAMAR---EEFENDSGSSQVFWLLKESELTPSNSNILDGRYA-VFGYVTDNEDFLAD 341
Query: 114 IST 116
+
Sbjct: 342 LKV 344
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin, isomerase, S
genomics, structural genomics consortium; HET: BMT;
1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Length = 186
Score = 34.5 bits (80), Expect = 0.005
Identities = 42/154 (27%), Positives = 56/154 (36%), Gaps = 38/154 (24%)
Query: 2 ATNFELLTIGE------FPGLSYRNCALSQLWQFESIIT------GSFRYGDKTEGRSVF 49
A NF L GE L Y F II G F GD T G S++
Sbjct: 49 AENFRALCTGEKGMGQSGKPLCYTGSF------FHRIIPQFMIQGGDFTRGDGTGGESIY 102
Query: 50 VQEYFRPDES----HLGARRGAVGMRRIKKTSENKGLV--GSQFRIILNHQKQFTG---I 100
F DE+ H + M N G GSQF I G +
Sbjct: 103 -GSKF-RDENFVYTHDAP--FLLSM-------ANAGPNTNGSQFFITTVPCPWLDGKHVV 151
Query: 101 FGQVIYGLEYIDAISTYSNAQGQPTERFYISNCG 134
FG+V+ G+E + +I + G+PT+ I+ G
Sbjct: 152 FGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASG 185
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain,
structura genomics, structural genomics consortium, SGC,
unknown FUNC; 1.80A {Plasmodium falciparum} SCOP:
b.62.1.1
Length = 160
Score = 34.1 bits (79), Expect = 0.006
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 18/103 (17%)
Query: 40 GDKTEGRSVFVQEY---FRPDESHLGARRGAVGMRRIKKTSENKG--LVGSQFRIILNHQ 94
GD T G S++ E+ F +H ++ V M N G GSQF I
Sbjct: 63 GDGTGGESIWGNEFEDEFFDHLNH--SKPFMVSM-------ANCGPNTNGSQFFITTVPC 113
Query: 95 KQFTG---IFGQVIYGLEYIDAI-STYSNAQGQPTERFYISNC 133
+FG+V G + + I ++ + +P E I N
Sbjct: 114 PWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNI 156
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel,
disorder-order transition, HOOK-like, mRNA processing,
mRNA splicing, rotamase; NMR {Homo sapiens}
Length = 203
Score = 33.5 bits (77), Expect = 0.010
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 20/104 (19%)
Query: 40 GDKTEGRSV----FVQEYFRPDESHLGARRGAVGMRRIKKTSENKG--LVGSQFRIILNH 93
G G S+ F E PD G + M N G GSQF + L
Sbjct: 69 GTGRGGASIYGKQFEDE-LHPDLKF--TGAGILAM-------ANAGPDTNGSQFFVTLAP 118
Query: 94 QKQFTG---IFGQVIYGLEYIDAIS-TYSNAQGQPTERFYISNC 133
+ G IFG+V G+ ++ + +N+Q +P + I
Sbjct: 119 TQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1;
isomerase-immunosuppressant complex, immunosuppressant;
HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB:
1xwn_A
Length = 166
Score = 32.6 bits (75), Expect = 0.021
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 19/85 (22%)
Query: 40 GDKTEGRSV----FVQEYFRPDESHLGARRGAVGMRRIKKTSENKG--LVGSQFRIILNH 93
G G S+ F E PD G + M N G GSQF + L
Sbjct: 69 GTGRGGASIYGKQFEDE-LHPDLKF--TGAGILAM-------ANAGPDTNGSQFFVTLAP 118
Query: 94 QKQFTG---IFGQVIYGLEYIDAIS 115
+ G IFG+V G+ ++ +
Sbjct: 119 TQWLDGKHTIFGRVCQGIGMVNRVG 143
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans
isomerization, protein-folding, peptidylprolyl ISO
structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Length = 176
Score = 31.9 bits (73), Expect = 0.040
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 19/85 (22%)
Query: 40 GDKTEGRSV----FVQEYFRPDESHLGARRGAVGMRRIKKTSENKG--LVGSQFRIILNH 93
G G S+ F E F H R + M N G GSQF I +
Sbjct: 79 GTGMGGESIWGGEFEDE-FHSTLRH--DRPYTLSM-------ANAGSNTNGSQFFITVVP 128
Query: 94 QKQFTG---IFGQVIYGLEYIDAIS 115
+FG+V G+E + IS
Sbjct: 129 TPWLDNKHTVFGRVTKGMEVVQRIS 153
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex;
HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB:
1j2a_A* 1vai_A* 1clh_A
Length = 166
Score = 31.4 bits (72), Expect = 0.047
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Query: 84 GSQFRI------ILNHQKQFTG--IFGQVIYGLEYIDAIS 115
SQF I L+H ++ G +FG+V+ G++ D IS
Sbjct: 100 TSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKIS 139
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics
center for infectious disease; 1.65A {Burkholderia
pseudomallei} PDB: 3t1u_A*
Length = 167
Score = 29.8 bits (68), Expect = 0.21
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 19/74 (25%)
Query: 56 PDESHLGAR--RGAVGMRRIKKTSE-NKGLVGSQFRI------ILNHQKQFTG-----IF 101
+E++ G + + M R T++ + +QF I LNH +F
Sbjct: 73 ANEANNGLKNDTYTIAMAR---TNDPHSA--TAQFFINVNDNEFLNHSSPTPQGWGYAVF 127
Query: 102 GQVIYGLEYIDAIS 115
G+V+ G + +D I
Sbjct: 128 GKVVEGQDIVDKIK 141
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex;
HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB:
2nul_A 2rs4_A
Length = 164
Score = 29.0 bits (66), Expect = 0.28
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 11/43 (25%)
Query: 84 GSQFRI------ILNHQKQFTG-----IFGQVIYGLEYIDAIS 115
+QF I LN + +F +V+ G++ +D I
Sbjct: 95 TAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIK 137
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure
initiative, NEW YORK SGX research center for structural
genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6}
PDB: 3ivd_A*
Length = 509
Score = 26.5 bits (59), Expect = 3.6
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 84 GSQFRIILNHQKQFTGIFGQVIYGLEY-IDAISTYSNAQGQ 123
G Q R ++ H + QV GLE D+ S GQ
Sbjct: 387 GKQLRSLMEHGASLSNGVLQVSKGLEMKYDS----SKPVGQ 423
>2dcf_A 6-aminohexanoate-dimer hydrolase; HET: ACA MES; 1.40A
{Flavobacterium SP} SCOP: e.3.1.1 PDB: 3a65_A* 1wyc_A
2zm7_A* 2e8i_A* 2zma_A* 3a66_A* 2zm0_A* 1wyb_A 2zm8_A*
2zly_A* 2zm9_A* 2zm2_A*
Length = 392
Score = 25.2 bits (55), Expect = 8.9
Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 84 GSQFRIILNHQKQFT--GIFGQVIY 106
Q+ N + + GI GQ ++
Sbjct: 327 TRQWWCTGNERGNVSGIGIHGQNLW 351
>4gb7_A 6-aminohexanoate-dimer hydrolase; structural genomics, IDP05595,
national institute of allergy and infectious diseases;
HET: MSE; 1.60A {Bacillus anthracis}
Length = 422
Score = 25.2 bits (55), Expect = 9.9
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 84 GSQFRIILNHQKQFT--GIFGQVIY 106
+Q+ I N Q F G +GQ +Y
Sbjct: 356 HNQWWIPHNEQGAFEVLGSYGQTLY 380
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.419
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,115,055
Number of extensions: 114239
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 36
Length of query: 138
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 54
Effective length of database: 4,356,429
Effective search space: 235247166
Effective search space used: 235247166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)