RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1145
(138 letters)
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 3 [TaxId: 6239]}
Length = 172
Score = 59.4 bits (143), Expect = 1e-12
Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Query: 16 LSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGARRGAVGMRRIKK 75
L ++ ++ I G F G+ T G S++ +++ + G + M
Sbjct: 53 LHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGP 112
Query: 76 TSENKGLVGSQFRIILNHQKQFTGIFGQVIYGLEYIDAISTYSNAQGQPTERFYISNCGK 135
+ G + +FG+V+ GL+ + A+ + + G+P + I++CG+
Sbjct: 113 NT--NGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQ 170
Query: 136 WE 137
+
Sbjct: 171 LK 172
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6
{Malassezia sympodialis [TaxId: 76777]}
Length = 162
Score = 58.2 bits (140), Expect = 3e-12
Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 3/133 (2%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L G Y ++ + G F G+ T G+S++ ++ +
Sbjct: 31 AANFRALCT-GEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLK 89
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTGIFGQVIYGLEYIDAISTYSNAQ 121
+ G + M + G ++ + +FG+VI G+ + AI +
Sbjct: 90 HNKPGLLSMANAGPNTN--GSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGS 147
Query: 122 GQPTERFYISNCG 134
G+P R I+ CG
Sbjct: 148 GKPRSRIEIAKCG 160
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia
malayi) [TaxId: 6279]}
Length = 174
Score = 55.2 bits (132), Expect = 6e-11
Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 3/121 (2%)
Query: 16 LSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGARRGAVGMRRIKK 75
L Y+ ++ + I G F GD T G S++ + + V M
Sbjct: 54 LHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGP 113
Query: 76 TSENKGLVGSQFRIILNHQKQFTGIFGQVIYGLEYIDAI-STYSNAQGQPTERFYISNCG 134
+ + H +FG+V+ G E + I +N++ +P I NCG
Sbjct: 114 NTNGSQFFITTTPA--PHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCG 171
Query: 135 K 135
+
Sbjct: 172 E 172
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium
falciparum [TaxId: 5833]}
Length = 170
Score = 54.1 bits (129), Expect = 1e-10
Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 13/141 (9%)
Query: 2 ATNFELLTIGEFP-----GLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRP 56
NF L GE L Y+N ++ G G+ + G S++ + +
Sbjct: 33 CENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDE 92
Query: 57 DESHLGARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDA 113
+ + + G + M + SQF I L G +FG+VI G+ +
Sbjct: 93 NFNMKHDQPGLLSMANAGPNTN-----SSQFFITLVPCPWLDGKHVVFGKVIEGMNVVRE 147
Query: 114 ISTYSNAQGQPTERFYISNCG 134
+ G I++CG
Sbjct: 148 MEKEGAKSGYVKRSVVITDCG 168
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow
(Bos taurus) [TaxId: 9913]}
Length = 195
Score = 53.7 bits (128), Expect = 2e-10
Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 8/125 (6%)
Query: 16 LSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGARRGAVGMRRIKK 75
L ++ C ++ + I G F + T G S++ +++ + + + G + M
Sbjct: 65 LHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGS 124
Query: 76 TSENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYSNAQGQPTERFYISN 132
+ GSQF I G +FGQVI G+ + +P + I+
Sbjct: 125 NTN-----GSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAE 179
Query: 133 CGKWE 137
CG+ +
Sbjct: 180 CGELK 184
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans
isomerase, cyclophilin F {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 53.3 bits (127), Expect = 2e-10
Identities = 19/120 (15%), Positives = 46/120 (38%), Gaps = 2/120 (1%)
Query: 15 GLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGARRGAVGMRRIK 74
G Y+ ++ G F + T G+S++ + + + G + M
Sbjct: 44 GFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAG 103
Query: 75 KTSENKGLVGSQFRIILNHQKQFTGIFGQVIYGLEYIDAISTYSNAQGQPTERFYISNCG 134
+ + + +FG VI G++ + I ++ + G+ +++ I++CG
Sbjct: 104 PNTNGSQFFICTIKT--DWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCG 161
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 5 [TaxId: 6239]}
Length = 182
Score = 52.5 bits (125), Expect = 6e-10
Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 3/123 (2%)
Query: 13 FPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGARRGAVGMRR 72
G Y ++ I G F GD T GRS++ +++ + G + M
Sbjct: 46 PKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMAN 105
Query: 73 IKKTSENKGLVGSQFRIILNHQKQFTGIFGQVIYGLEYIDAISTY-SNAQGQPTERFYIS 131
+ + + + +FG+++ G++ + I +P + I+
Sbjct: 106 AGADTNGSQFFITTVKTPWLDGRH--VVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIA 163
Query: 132 NCG 134
G
Sbjct: 164 ASG 166
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus
musculus), variant C [TaxId: 10090]}
Length = 182
Score = 51.8 bits (123), Expect = 1e-09
Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 9/128 (7%)
Query: 14 PGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGARRGAVGMRRI 73
G Y+ ++ + I G F D T G S++ + + + G V M
Sbjct: 48 KGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMAN- 106
Query: 74 KKTSENKGLVGSQFRIILN---HQKQFTGIFGQVIYGLEYIDAIS-TYSNAQGQPTERFY 129
GSQF I L +FG+V+ G+ + +I ++ +P
Sbjct: 107 ----AGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCT 162
Query: 130 ISNCGKWE 137
I N GK +
Sbjct: 163 IVNSGKID 170
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo
sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20
[TaxId: 9606]}
Length = 173
Score = 48.7 bits (115), Expect = 1e-08
Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 9/125 (7%)
Query: 14 PGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGARRGAVGMRRI 73
+ Y+ ++ + I G F GD T S++ + + + G + M
Sbjct: 52 VPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANS 111
Query: 74 KKTSENKGLVGSQFRIILNHQKQF---TGIFGQVIYGLEYIDAISTY-SNAQGQPTERFY 129
++ G QF I + +FG++I GL + I + +P
Sbjct: 112 GPSTN-----GCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVV 166
Query: 130 ISNCG 134
IS CG
Sbjct: 167 ISQCG 171
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi
[TaxId: 5693]}
Length = 166
Score = 47.5 bits (112), Expect = 4e-08
Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 10/122 (8%)
Query: 17 SYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGARRGAVGMRRIKKT 76
Y+ ++ + I G F D T G+S++ + + G +
Sbjct: 49 GYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHFV----GAVSMANA 104
Query: 77 SENKGLVGSQFRIILNHQKQ---FTGIFGQVIYGLEYIDAI-STYSNAQGQPTERFYISN 132
N GSQF + +FG+V+ G++ + + +T + +P + I++
Sbjct: 105 GPNSN--GSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKIND 162
Query: 133 CG 134
CG
Sbjct: 163 CG 164
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus
fumigatus [TaxId: 5085]}
Length = 171
Score = 47.2 bits (111), Expect = 5e-08
Identities = 34/140 (24%), Positives = 51/140 (36%), Gaps = 13/140 (9%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
A NF L G YR ++ I G F G+ T GRS++ ++ + S
Sbjct: 36 AKNFRELCK-RPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRK 94
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTG---IFGQVI--YGLEYIDAIST 116
++G + M + GSQF I G +FG+V + I
Sbjct: 95 HDKKGILSMANAGPNTN-----GSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEA 149
Query: 117 Y--SNAQGQPTERFYISNCG 134
S+ + R I NCG
Sbjct: 150 LGSSSGSVRSNTRPKIVNCG 169
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl
cis-trans isomerase, cyclophilin F {Human (Homo sapiens)
[TaxId: 9606]}
Length = 161
Score = 44.1 bits (103), Expect = 5e-07
Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 8/120 (6%)
Query: 18 YRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGARRGAVGMRRIKKTS 77
++ + ++ G F + T G+S++ +++ + G + M +
Sbjct: 46 FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNT 105
Query: 78 ENKGLVGSQFRIILNHQKQFTG---IFGQVIYGLEYIDAISTYSNAQGQPTERFYISNCG 134
GSQF + + G +FG+V GL+ + I + G+P ++ I++CG
Sbjct: 106 N-----GSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCG 160
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium
yoelii [TaxId: 5861]}
Length = 186
Score = 42.6 bits (99), Expect = 2e-06
Identities = 18/125 (14%), Positives = 41/125 (32%), Gaps = 6/125 (4%)
Query: 14 PGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHLGARRGAVGMRRI 73
+ Y+N ++ + I G F + + S++ +++ + + G + M
Sbjct: 62 LPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANS 121
Query: 74 KKTSENKGLVGSQFRIILNHQKQFTGIFGQVI--YGLEYIDAISTYS--NAQGQPTERFY 129
N + + +FG++I L + I S +P
Sbjct: 122 GPN-TNGCQFFITTKKCEWLDGKNV-VFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPIN 179
Query: 130 ISNCG 134
+ CG
Sbjct: 180 VVECG 184
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w
{Plasmodium falciparum [TaxId: 5833]}
Length = 155
Score = 38.0 bits (87), Expect = 8e-05
Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 7/133 (5%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
NF + +I Y N + ++ GD T G S++ E+ HL
Sbjct: 26 VQNFSVHSING-----YYNNCIFHRVIKHFMVQTGDPSGDGTGGESIWGNEFEDEFFDHL 80
Query: 62 GARRGAVGMRRIKKTSENKGLVGSQFRIILNHQKQFTGIFGQVIYGLEYIDAIS-TYSNA 120
+ + + N G + +FG+V G + + I ++
Sbjct: 81 NHSKPFMVSMANCGPNTN-GSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDK 139
Query: 121 QGQPTERFYISNC 133
+ +P E I N
Sbjct: 140 RDKPLEDIKILNI 152
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693
{Plasmodium yoelii [TaxId: 5861]}
Length = 169
Score = 37.9 bits (87), Expect = 1e-04
Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 10/122 (8%)
Query: 18 YRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL-GARRGAVGMRRIKKT 76
+ + + +I G G G+S++ + + L G + M
Sbjct: 52 FYDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPN 111
Query: 77 SENKGLVGSQFRIIL---NHQKQFTGIFGQVIYGLEYIDAI-STYSNAQGQPTERFYISN 132
+ + SQF I L H IF +V + I+ I S + A +P I
Sbjct: 112 TNS-----SQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILR 166
Query: 133 CG 134
Sbjct: 167 TS 168
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like
1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 166
Score = 35.9 bits (82), Expect = 5e-04
Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 15/134 (11%)
Query: 2 ATNFELLTIGEFPGLSYRNCALSQLWQFESIITGSFRYGDKTEGRSVFVQEYFRPDESHL 61
NF L + Y ++ + I G G G S++ +++ L
Sbjct: 36 CKNFAELARRGY----YNGTKFHRIIKDFMIQGGDP-TGTGRGGASIYGKQFEDELHPDL 90
Query: 62 G-ARRGAVGMRRIKKTSENKGLVGSQFRIIL---NHQKQFTGIFGQVIYGLEYIDAIS-T 116
G + M + GSQF + L IFG+V G+ ++ +
Sbjct: 91 KFTGAGILAMANAGPDTN-----GSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMV 145
Query: 117 YSNAQGQPTERFYI 130
+N+Q +P + I
Sbjct: 146 ETNSQDRPVDDVKI 159
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 166
Score = 28.0 bits (61), Expect = 0.30
Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 20/135 (14%)
Query: 16 LSYRNCALSQLWQFESIITGSFRYGD-KTEGRSVFVQEYFRPDESH--LGARRGAVGMRR 72
+ Y N F +I G G TE +E+ L RG + M R
Sbjct: 33 VDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMAR 92
Query: 73 IKKTSENKGLVGSQFRI------ILNHQKQFTG--IFGQVIYGLEYIDAIST-----YSN 119
+K SQF I L+H ++ G +FG+V+ G++ D IS
Sbjct: 93 TA----DKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGP 148
Query: 120 AQGQPTERFYISNCG 134
Q P++ I +
Sbjct: 149 YQNVPSKPVVILSAT 163
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.419
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 517,547
Number of extensions: 22015
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 17
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.9 bits)