BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11450
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E0W|A Chain A, T391a Precursor Mutant Protein Of
Gamma-Glutamyltranspeptidase From Escherichia Coli
pdb|2E0W|B Chain B, T391a Precursor Mutant Protein Of
Gamma-Glutamyltranspeptidase From Escherichia Coli
Length = 556
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 165/327 (50%), Gaps = 11/327 (3%)
Query: 10 SRALFINEKNLTKVENDTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIIT 69
S+A+F E K + DT V LAK+ +IAE G D + G++ + +++Q+ GG+IT
Sbjct: 181 SKAIFWKEGEPLK-KGDTLVQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLIT 239
Query: 70 EADMNNYNVEIEEPIVAKLKGNHTLWTSPLPGSG-ILLSFMLEILQYLIPAPSELLWHQR 128
+ D+ Y PI +G + +++ P P SG I + +L IL+
Sbjct: 240 KEDLAAYKAVERTPISGDYRG-YQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADA 298
Query: 129 IWVTGDTHPEAHNSYSSSINQVV------QQLQSQDFIQEIRSQISDNRTWQDIEHYNAK 182
+ + + A+ S + Q L ++ + + I QI N+ E K
Sbjct: 299 MQIMAEAEKYAYADRSEYLGDPDFVKVPWQALTNKAYAKSIADQIDINKAKPSSEIRPGK 358
Query: 183 FVPSEDHGTANIVVYSEAGDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFSS-PNITN 241
P E + + V + G+AV T T+N FG+ V+ +GIL+N+QMDDFS+ P + N
Sbjct: 359 LAPYESNQATHYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPN 418
Query: 242 YFHIPPSPANFIQPGKRPLSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWS 301
+ + AN + P KRPLSSM P+I+ +DG L G+ GG++I T++ Q+++ ++
Sbjct: 419 VYGLVGGDANAVGPNKRPLSSMSPTIVV-KDGKTWLVTGSPGGSRIITTVLQMVVNSIDY 477
Query: 302 NNTLKESVDAARIHHQLFPMKYGYEYG 328
+ E+ +A R HHQ P + E G
Sbjct: 478 GLNVAEATNAPRFHHQWLPDELRVEKG 504
>pdb|2Z8I|B Chain B, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8I|D Chain D, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8J|D Chain D, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8K|B Chain B, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
pdb|2Z8K|D Chain D, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
Length = 190
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 84/139 (60%), Gaps = 2/139 (1%)
Query: 191 TANIVVYSEAGDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFSS-PNITNYFHIPPSP 249
T + V + G+AV T T+N FG+ V+ +GIL+N+QMDDFS+ P + N + +
Sbjct: 1 TTHYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGD 60
Query: 250 ANFIQPGKRPLSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWSNNTLKESV 309
AN + P KRPLSSM P+I+ +DG L G+ GG++I T++ Q+++ ++ + E+
Sbjct: 61 ANAVGPNKRPLSSMSPTIVV-KDGKTWLVTGSPGGSRIITTVLQMVVNSIDYGLNVAEAT 119
Query: 310 DAARIHHQLFPMKYGYEYG 328
+A R HHQ P + E G
Sbjct: 120 NAPRFHHQWLPDELRVEKG 138
>pdb|2Z8J|B Chain B, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
Length = 190
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 82/134 (61%), Gaps = 2/134 (1%)
Query: 196 VYSEAGDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFSS-PNITNYFHIPPSPANFIQ 254
V + G+AV T T+N FG+ V+ +GIL+N+QMDDFS+ P + N + + AN +
Sbjct: 6 VVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGDANAVG 65
Query: 255 PGKRPLSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWSNNTLKESVDAARI 314
P KRPLSSM P+I+ +DG L G+ GG++I T++ Q+++ ++ + E+ +A R
Sbjct: 66 PNKRPLSSMSPTIVV-KDGKTWLVTGSPGGSRIITTVLQMVVNSIDYGLNVAEATNAPRF 124
Query: 315 HHQLFPMKYGYEYG 328
HHQ P + E G
Sbjct: 125 HHQWLPDELRVEKG 138
>pdb|2DBU|B Chain B, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBU|D Chain D, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBX|B Chain B, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DBX|D Chain D, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DG5|B Chain B, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2DG5|D Chain D, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2E0X|B Chain B, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0X|D Chain D, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0Y|B Chain B, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
pdb|2E0Y|D Chain D, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
pdb|2DBW|B Chain B, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBW|D Chain D, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
Length = 190
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 81/139 (58%), Gaps = 2/139 (1%)
Query: 191 TANIVVYSEAGDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFSS-PNITNYFHIPPSP 249
T + V + G+AV T T+N FG+ V+ +GIL+N+Q DDFS+ P + N + +
Sbjct: 1 TTHYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQXDDFSAKPGVPNVYGLVGGD 60
Query: 250 ANFIQPGKRPLSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWSNNTLKESV 309
AN + P KRPLSS P+I+ +DG L G+ GG++I T++ Q ++ ++ + E+
Sbjct: 61 ANAVGPNKRPLSSXSPTIVV-KDGKTWLVTGSPGGSRIITTVLQXVVNSIDYGLNVAEAT 119
Query: 310 DAARIHHQLFPMKYGYEYG 328
+A R HHQ P + E G
Sbjct: 120 NAPRFHHQWLPDELRVEKG 138
>pdb|2QMC|B Chain B, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|2QMC|D Chain D, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
Length = 188
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
Query: 201 GDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFS-SPNITNYFHIPPSPANFIQPGKRP 259
G+AV T T+N +GS G L+N++MDDFS P N + + AN I+ KRP
Sbjct: 11 GNAVSVTYTINASYGSAASIDGAGFLLNNEMDDFSIKPGNPNLYGLVGGDANAIEANKRP 70
Query: 260 LSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWSNNTLKESVDAARIHHQLF 319
LSSM P+I+ ++ V L VG+ GG++I T++ QVI + N + E+V A R H Q
Sbjct: 71 LSSMSPTIVL-KNNKVFLVVGSPGGSRIITTVLQVISNVIDYNMNISEAVSAPRFHMQWL 129
Query: 320 P 320
P
Sbjct: 130 P 130
>pdb|2NQO|B Chain B, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2NQO|D Chain D, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2QM6|B Chain B, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QM6|D Chain D, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|3FNM|B Chain B, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
pdb|3FNM|D Chain D, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
Length = 188
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
Query: 201 GDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFS-SPNITNYFHIPPSPANFIQPGKRP 259
G+AV T T+N +GS G L+N++MDDFS P N + + AN I+ KRP
Sbjct: 11 GNAVSVTYTINASYGSAASIDGAGFLLNNEMDDFSIKPGNPNLYGLVGGDANAIEANKRP 70
Query: 260 LSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWSNNTLKESVDAARIHHQLF 319
LSSM P+I+ ++ V L VG+ GG++I T++ QVI + N + E+V A R H Q
Sbjct: 71 LSSMSPTIVL-KNNKVFLVVGSPGGSRIITTVLQVISNVIDYNMNISEAVSAPRFHMQWL 129
Query: 320 P 320
P
Sbjct: 130 P 130
>pdb|2V36|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
pdb|2V36|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
Length = 193
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 11/144 (7%)
Query: 191 TANIVVYSEAGDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFSSPNITNYFHIPPSPA 250
T + V G+ V T+T+ +FG+ + P G+++N+++ DF + P A
Sbjct: 1 TTHFTVADRWGNVVSYTTTIEQLFGTGIMVPDYGVILNNELTDFDAI---------PGGA 51
Query: 251 NFIQPGKRPLSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWSNNTLKESVD 310
N +QP KRPLSSM P+I+ D V L VG+ GG I +S+ Q I+ ++ LK +V+
Sbjct: 52 NEVQPNKRPLSSMTPTILFKDDKPV-LTVGSPGGATIISSVLQTILYHIEYGMELKAAVE 110
Query: 311 AARIHHQLFPMKYGYEYGVLRSII 334
RI+ Y YE GV + ++
Sbjct: 111 EPRIYTNSMS-SYRYEDGVPKDVL 133
>pdb|3A75|B Chain B, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
pdb|3A75|D Chain D, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
Length = 185
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 11/144 (7%)
Query: 191 TANIVVYSEAGDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFSSPNITNYFHIPPSPA 250
T + V G+ V T+T+ +FG+ + P G+++N+++ DF + P A
Sbjct: 1 TTHFTVADRWGNVVSYTTTIEQLFGTGIMVPDYGVILNNELTDFDAI---------PGGA 51
Query: 251 NFIQPGKRPLSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWSNNTLKESVD 310
N +QP KRPLSSM P+I+ D V L VG+ GG I +S+ Q I+ ++ LK +V+
Sbjct: 52 NEVQPNKRPLSSMTPTILFKDDKPV-LTVGSPGGATIISSVLQTILYHIEYGMELKAAVE 110
Query: 311 AARIHHQLFPMKYGYEYGVLRSII 334
RI+ Y YE GV + ++
Sbjct: 111 EPRIYTNSMS-SYRYEDGVPKDVL 133
>pdb|3A75|A Chain A, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
pdb|3A75|C Chain C, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
Length = 384
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%)
Query: 24 ENDTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIITEADMNNYNVEIEEP 83
E DT + LAKTF +I +G DA + G K +Q+ GG +TE D+ NY++ I+EP
Sbjct: 198 EGDTLIQKDLAKTFKLIRSKGTDAFYKGKFAKTLSDTVQDFGGSMTEKDLENYDITIDEP 257
Query: 84 IVAKLKGNHTLWTSPLPGSGILLSFMLEILQYL 116
I +G T P GI L ML+IL +
Sbjct: 258 IWGDYQGYQIATTPPPSSGGIFLLQMLKILDHF 290
>pdb|2V36|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
pdb|2V36|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
Length = 376
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 49/93 (52%)
Query: 24 ENDTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIITEADMNNYNVEIEEP 83
E DT + LAKTF +I +G DA + G K +Q+ GG +TE D+ NY++ I+EP
Sbjct: 190 EGDTLIQKDLAKTFKLIRSKGTDAFYKGKFAKTLSDTVQDFGGSMTEKDLENYDITIDEP 249
Query: 84 IVAKLKGNHTLWTSPLPGSGILLSFMLEILQYL 116
I +G T P GI L M +IL +
Sbjct: 250 IWGDYQGYQIATTPPPSSGGIFLLQMPKILDHF 282
>pdb|2NQO|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2NQO|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
Length = 376
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 57/108 (52%)
Query: 7 FTFSRALFINEKNLTKVENDTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGG 66
++ S+ F + +L E D +V LAKT + I G + G + + KD+++ GG
Sbjct: 187 YSSSKKYFFKKGHLDYQEGDLFVQKDLAKTLNQIKTLGAKGFYQGQVAELIEKDMKKNGG 246
Query: 67 IITEADMNNYNVEIEEPIVAKLKGNHTLWTSPLPGSGILLSFMLEILQ 114
IIT+ D+ +YNV+ +P+V +G + SP G L +L +++
Sbjct: 247 IITKEDLASYNVKWRKPVVGSYRGYKIISMSPPSSGGTHLIQILNVME 294
>pdb|2NLZ|A Chain A, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|B Chain B, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|C Chain C, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|D Chain D, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
Length = 547
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 116/290 (40%), Gaps = 34/290 (11%)
Query: 34 AKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIITEADMNNYNVEIEEPIVAKLKGNHT 93
A T IAE G++ + G L + GG +T+ D+ Y E EPI +G +
Sbjct: 205 ADTLRSIAESNGESFYRGELADQIHAFFDKHGGYLTKEDLACYRPEWVEPISIDYRG-YR 263
Query: 94 LWTSPLPGSGILLSFMLEILQYLIPAPSELLWHQRIWVTGDTHPEA----------HNSY 143
+W P G G++ L I++ +H+ T EA + +
Sbjct: 264 VWEIPPNGQGLVALEALNIVKGF------EFYHKDTVDTYHKQIEAMKLAFVDGMKYVTE 317
Query: 144 SSSINQVVQQLQSQDFIQEIRSQISDNRTWQDIEHYNAKFVPSEDHGTANIVVYSEAGDA 203
S ++ V+QL S ++ E R +I + + + GT + G+
Sbjct: 318 PSDMSVSVEQLLSDEYATERRKEIGE-------QALTPEPGTPPRGGTVYLATADGDGNM 370
Query: 204 VVATSTVNLVFGSRFVSPSTGILVNDQMDDFSSPNITNYFHIPPSPANFIQPGKRPLSSM 263
V + + FGS V P TGI + ++ +FS + P+ N ++PGKR ++
Sbjct: 371 VSFIQSNYMGFGSGVVVPGTGIAMQNRGHNFS---------LDPNHDNALKPGKRTYHTI 421
Query: 264 CPSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWSNNTLKESVDAAR 313
P +T D + G GG QV+M + + ++DA R
Sbjct: 422 IPGFLTKNDQPIG-PFGVMGGFMQPQGHMQVMMNTIDFGLNPQAALDAPR 470
>pdb|2QM6|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QM6|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QMC|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|2QMC|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|3FNM|A Chain A, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
pdb|3FNM|C Chain C, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
Length = 377
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 57/108 (52%)
Query: 7 FTFSRALFINEKNLTKVENDTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGG 66
++ S+ F + +L E D +V LAKT + I G + G + + KD+++ GG
Sbjct: 188 YSSSKKYFFKKGHLDYQEGDLFVQKDLAKTLNQIKTLGAKGFYQGQVAELIEKDMKKNGG 247
Query: 67 IITEADMNNYNVEIEEPIVAKLKGNHTLWTSPLPGSGILLSFMLEILQ 114
IIT+ D+ +YNV+ +P+V +G + SP G L +L +++
Sbjct: 248 IITKEDLASYNVKWRKPVVGSYRGYKIISMSPPSSGGTHLIQILNVME 295
>pdb|2Z8I|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8I|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8J|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8J|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8K|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
pdb|2Z8K|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
Length = 366
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 10 SRALFINEKNLTKVENDTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIIT 69
S+A+F E K + DT V LAK+ +IAE G D + G++ + +++Q+ GG+IT
Sbjct: 181 SKAIFWKEGEPLK-KGDTLVQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLIT 239
Query: 70 EADMNNYNVEIEEPIVAKLKGNHTLWTSPLPGS-GILLSFMLEILQ 114
+ D+ Y PI +G + +++ P P S GI + +L IL+
Sbjct: 240 KEDLAAYKAVERTPISGDYRG-YQVYSMPPPSSGGIHIVQILNILE 284
>pdb|2DBU|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBU|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBW|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBW|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBX|A Chain A, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DBX|C Chain C, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DG5|A Chain A, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2DG5|C Chain C, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2E0X|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0X|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0Y|A Chain A, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
pdb|2E0Y|C Chain C, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
Length = 366
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 10 SRALFINEKNLTKVENDTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIIT 69
S+A+F E K + DT V LAK+ IAE G D + G++ + ++ Q+ GG+IT
Sbjct: 181 SKAIFWKEGEPLK-KGDTLVQANLAKSLEXIAENGPDEFYKGTIAEQIAQEXQKNGGLIT 239
Query: 70 EADMNNYNVEIEEPIVAKLKGNHTLWTSPLPGS-GILLSFMLEILQ 114
+ D+ Y PI +G + +++ P P S GI + +L IL+
Sbjct: 240 KEDLAAYKAVERTPISGDYRG-YQVYSXPPPSSGGIHIVQILNILE 284
>pdb|2I3O|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
Length = 516
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/287 (19%), Positives = 111/287 (38%), Gaps = 42/287 (14%)
Query: 31 PALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIITEADMNNYNVEIEEPIVAKLKG 90
P LA++F + +EEG + ++GSL + ++ G +++ D+ Y I +P+ L
Sbjct: 186 PDLAESFRLXSEEGFRSFYDGSLADIIIAGLEGTGSPLSDRDLRVYRPLIGKPVFTDLDE 245
Query: 91 NHTLWTSPLPGSGILLSFMLEILQYLIPAPSELLWHQRIWVTGDTHPEAHNSYSSSINQV 150
TSP ++ ++ + S W +I +T EA++
Sbjct: 246 FRIYETSPNSQGITVIEWIRGXESHGY--DSRTXWEAKIEDIFETXEEAYDK-------- 295
Query: 151 VQQLQSQDFIQEIRSQISD----NRTWQDIEHYNAKFVPSEDHGTANIVVY----SEAGD 202
R +I+D N D + +P DH Y G
Sbjct: 296 -------------RRKITDPSYXNIAQHDSANGKKDGLPKRDHNDIGDTTYFSISDSEGR 342
Query: 203 AVVATSTVNLVFGSRFVSPSTGILVNDQMDDFSSPNITNYFHIPPSPANFIQPGKRPLSS 262
+V + FGS V TG ++ N +YF + N + PGKR +
Sbjct: 343 SVSIIQSNYXGFGSGIVPKGTGFVLQ---------NRGSYFTLQRDHPNALXPGKRTFHT 393
Query: 263 MCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWSNNTLKESV 309
+ + +++ ++ ++G+ GG I + I+ + +NT +++
Sbjct: 394 LAACXV-EKEHDLYASLGSXGG-DIQPQVQXQILXEILKDNTDPQAI 438
>pdb|3G9K|L Chain L, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3G9K|D Chain D, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3GA9|L Chain L, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd, Crystal Form Ii
Length = 323
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 26 DTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIITEADMNNYNVEIEEPIV 85
+T + LA+T I +EG + G + +A K + I+ D+ Y VE+ +P+
Sbjct: 171 ETLIQTDLARTLKKIQKEGAKGFYEGGVARAISKTAK-----ISLEDIKGYKVEVRKPVK 225
Query: 86 AKLKGNHTLWTSPLPGSGILLSFMLEILQ 114
G + ++T+P P SG+ L L++ +
Sbjct: 226 GNYXG-YDVYTAPPPFSGVTLLQXLKLAE 253
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 38/140 (27%)
Query: 115 YLIPAPSELLWHQRIWVTGD------THPEAHNSYSSSINQVVQQLQSQDFIQEI----- 163
Y P PS+ + W+ +PE YS+ + + +D Q +
Sbjct: 111 YYRPTPSDCQLLREQWIRAKYERQEFIYPEKQEPYSAGYREGFLWKRGRDNGQFLSRKFV 170
Query: 164 ------------RSQISDNRTWQDIEHYNAKFVPS-------------EDHGTANIVVYS 198
R+ + + IEH NA F P+ +D+ T NI +Y
Sbjct: 171 LTEREGALKYFNRNDAKEPKAVMKIEHLNATFQPAKIGHPHGLQVTYLKDNSTRNIFIYH 230
Query: 199 EAGDAVVATSTVNLVFGSRF 218
E G +V N + +RF
Sbjct: 231 EDGKEIV--DWFNALRAARF 248
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 38/140 (27%)
Query: 115 YLIPAPSELLWHQRIWVTGD------THPEAHNSYSSSINQVVQQLQSQDFIQEI----- 163
Y P PS+ + W+ +PE YS+ + + +D Q +
Sbjct: 109 YYRPTPSDCQLLREQWIRAKYERQEFIYPEKQEPYSAGYREGFLWKRGRDNGQFLSRKFV 168
Query: 164 ------------RSQISDNRTWQDIEHYNAKFVPS-------------EDHGTANIVVYS 198
R+ + + IEH NA F P+ +D+ T NI +Y
Sbjct: 169 LTEREGALKYFNRNDAKEPKAVMKIEHLNATFQPAKIGHPHGLQVTYLKDNSTRNIFIYH 228
Query: 199 EAGDAVVATSTVNLVFGSRF 218
E G +V N + +RF
Sbjct: 229 EDGKEIV--DWFNALRAARF 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,871,994
Number of Sequences: 62578
Number of extensions: 448016
Number of successful extensions: 1046
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1012
Number of HSP's gapped (non-prelim): 26
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)