RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11450
(350 letters)
>gnl|CDD|216247 pfam01019, G_glu_transpept, Gamma-glutamyltranspeptidase.
Length = 495
Score = 299 bits (767), Expect = 4e-98
Identities = 126/343 (36%), Positives = 173/343 (50%), Gaps = 37/343 (10%)
Query: 10 SRALFINEKNLTKVENDTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIIT 69
+F+ D PALAKT +IAEEG +A + G L +A V D+Q AGGIIT
Sbjct: 140 LAKIFLPT-GKPPKAGDLLKQPALAKTLELIAEEGPEAFYRGELAEALVADLQAAGGIIT 198
Query: 70 EADMNNYNVEIEEPIVAKLKGNHTLWTSPLPGSGILLSFMLEILQ--YLIPAPSELLWH- 126
D+ NY VE+ EP+ G +T++ P G +L +L IL+ L S H
Sbjct: 199 LEDLANYKVEVREPLSGDY-GGYTVYEPPPSSGGAVLLQILNILEGFDLSGPNSAEYVHL 257
Query: 127 ----------QRIWVTGDTHPEAHNSYSSSINQVVQQLQSQDFIQEIRSQISDNRTWQDI 176
R GD + V+ L S+++ +E R+ I+ N
Sbjct: 258 LVEAMKLAYADRSRYLGDPD---------FVPVPVENLLSKEYAKERRALINPNAA---- 304
Query: 177 EHYNAKFVPSEDHGTANIVVYSEAGDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFSS 236
ED GT + V G+AV ATS++NL FGS V P TGIL+N++MDDFS+
Sbjct: 305 ---FPSSPGPEDGGTTHFSVVDRDGNAVSATSSINLGFGSGVVVPGTGILLNNEMDDFST 361
Query: 237 PNITNYFHIPPSPANFIQPGKRPLSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIM 296
P F + PS AN I+PGKRPLSSM P+I+ DG L +GA GG++I ++ QVI+
Sbjct: 362 PG----FGLDPSHANAIEPGKRPLSSMSPTIVLK-DGKPVLVLGAPGGSRIIQAVLQVIV 416
Query: 297 MNLWSNNTLKESVDAARIHHQLFPMKYGYEYGVLRSIIEGMER 339
L L+E+VDA R HHQL P E G ++ +E
Sbjct: 417 NVLDYGMNLQEAVDAPRFHHQL-PDVVEVEPGFPEEVLAELEA 458
>gnl|CDD|223482 COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and
metabolism].
Length = 539
Score = 226 bits (578), Expect = 2e-69
Identities = 105/327 (32%), Positives = 165/327 (50%), Gaps = 18/327 (5%)
Query: 10 SRALFINEKNLTKVENDTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIIT 69
+ A+F+ D P LAKT IAE+G DA + G + A VK +Q+AGG++T
Sbjct: 173 TAAIFLP-PGKPLKAGDLLKQPDLAKTLEEIAEKGPDAFYKGEIADAIVKAVQKAGGLLT 231
Query: 70 EADMNNYNVEIEEPIVAKLKGNHTLWTSPLP-GSGILLSFMLEILQYLIPAPSELLWHQR 128
D+ Y VEI EP+ +G + ++ P P GI + +L IL+ + +R
Sbjct: 232 LEDLAGYRVEIREPLSGDYRG-YDVYEMPPPSSGGIAVLQILNILENFDLSSLGPGSAER 290
Query: 129 IWVTGDTHPEAH---NSYSSSINQV---VQQLQSQDFIQEIRSQISDNRTWQDIEHYNAK 182
+ + + A+ + Y + V V+ L S+++ +E + I + + K
Sbjct: 291 VHLLIEAMKLAYADRDRYLGDPDFVPVPVEGLLSKEYAKERAALIGPEKALPPKKVKPGK 350
Query: 183 FVPSEDHGTANIVVYSEAGDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFSSPNITNY 242
E GT + V + G+AV T ++NL FGS V P TGIL+N++MDDFS
Sbjct: 351 L---ESGGTTHFSVVDKEGNAVSFTQSINLGFGSGVVVPGTGILLNNRMDDFSLKPG--- 404
Query: 243 FHIPPSPANFIQPGKRPLSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWSN 302
H AN ++PGKRPLSSM P+I+ DG + +G+ GG++I ++ Q I+ +
Sbjct: 405 -HPNFGDANAVEPGKRPLSSMAPTIVLK-DGKPVMVLGSPGGSRIPQTVLQTIVNVIDYG 462
Query: 303 NTLKESVDAARIHHQLFPMKYGYEYGV 329
+E++DA R HHQL P E +
Sbjct: 463 MNPQEAIDAPRFHHQLLP-GDELEPEL 488
>gnl|CDD|177849 PLN02198, PLN02198, glutathione gamma-glutamylcysteinyltransferase.
Length = 573
Score = 214 bits (546), Expect = 1e-64
Identities = 125/331 (37%), Positives = 187/331 (56%), Gaps = 25/331 (7%)
Query: 11 RALFINEKNLTKVENDTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIITE 70
LF++ L K + P LA T +I E G A +NG++ V+DIQ++GGIIT
Sbjct: 185 SDLFVSNGELKKPGTICHN-PKLALTLRLIGEYGPKAFYNGTVGVNLVRDIQKSGGIITL 243
Query: 71 ADMNNYNVEIEEPIVAKLKGNHTLWTSPLPGSGILLSFMLEIL-QYLIPA--PSELLWHQ 127
D+ +Y V+++EP+ A + G L P G + +L IL QY IP+ L H+
Sbjct: 244 KDLQSYRVKVKEPLSADILGYRVLGMPPPSSGGAAMMLILNILAQYGIPSGVSGPLGVHR 303
Query: 128 RIWVT----------GDTHPEAHNSYSSSINQVVQQLQSQDFIQEIRSQISDNRTWQDIE 177
I GD P+ + + +VV + S F Q+++S+I+DN+T+ D +
Sbjct: 304 LIEALKHAFAVRMNLGD--PDFVD-----VTKVVSDMLSPKFAQDLKSKINDNKTF-DPK 355
Query: 178 HYNAKFVPSEDHGTANIVVYSEAGDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFSSP 237
HY ++ +DHGT+++ + +AV TST+N FG+ +SPSTGI++N++MDDFS P
Sbjct: 356 HYGGRWNQIDDHGTSHLSIIDSERNAVSMTSTINGYFGALMLSPSTGIVLNNEMDDFSIP 415
Query: 238 -NITNYFHI-PPSPANFIQPGKRPLSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVI 295
+ PP+PANFI+PGKRPLSSM P+I+ +DG VK AVGA+GG I +V
Sbjct: 416 MKSGGNLDVPPPAPANFIRPGKRPLSSMTPTIVL-KDGKVKAAVGASGGANIIAGTTEVY 474
Query: 296 MMNLWSNNTLKESVDAARIHHQLFPMKYGYE 326
+ + + SV A RI+HQL P + YE
Sbjct: 475 LNHFFLKMDPLSSVLAPRIYHQLIPNRASYE 505
>gnl|CDD|129176 TIGR00066, g_glut_trans, gamma-glutamyltranspeptidase. Also called
gamma-glutamyltranspeptidase (ggt). Some members of this
family have antibiotic synthesis or resistance
activities. In the case of a cephalosporin acylase from
Pseudomonas sp., the enzyme was shown to retain some
gamma-glutamyltranspeptidase activity. Other, more
distantly related proteins have ggt-related activities
and score below the trusted cutoff [Biosynthesis of
cofactors, prosthetic groups, and carriers, Glutathione
and analogs].
Length = 516
Score = 204 bits (520), Expect = 2e-61
Identities = 105/321 (32%), Positives = 159/321 (49%), Gaps = 34/321 (10%)
Query: 24 ENDTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIITEADMNNYNVEIEEP 83
E DT V LAK+ +IAE G DA + G + ++ + +Q+ GGI+T+ D+ Y+VEI +P
Sbjct: 171 EGDTLVQKDLAKSLELIAENGPDAFYKGDIAESIIDTLQKNGGIMTKKDLAAYDVEIRKP 230
Query: 84 IVAKLKGNHTLWTSPLPGSGILLSFMLEIL--------------QYLIPAPSELLWHQ-R 128
+ +G T P GI L L IL Y + A + L + R
Sbjct: 231 LSGDYRGYQVYTTPPPSSGGIHLLQALNILENFDLSQYGDGSAETYQLLAEAMKLSYADR 290
Query: 129 IWVTGDTHPEAHNSYSSSINQVVQQLQSQDFIQEIRSQISDNRTWQDIEHYNAKFVPSED 188
GD ++ +++L + + +E+ I N+ Y + P+E
Sbjct: 291 SRYLGDPE---------FVDVPLEELLDKRYAKELAQSIKINKVDPKSTIYPGAYQPNEG 341
Query: 189 HGTANIVVYSEAGDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFSSPNITNYFHIPPS 248
T + V G+AV T+T+NL FGS +P TGIL+N++MDDFS + P
Sbjct: 342 SQTTHFSVVDRDGNAVSLTTTINLEFGSGVHAPDTGILLNNEMDDFS---------LKPG 392
Query: 249 PANFIQPGKRPLSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWSNNTLKES 308
AN ++P KRPLSSM P+I+ DG L VG+ GG++I T++ Q I+ ++ L E+
Sbjct: 393 GANAVEPNKRPLSSMAPTIVLK-DGKPDLVVGSPGGSRIITTVLQTIVRHIDYGMPLAEA 451
Query: 309 VDAARIHHQLFPMKYGYEYGV 329
V RIHHQ P + E G
Sbjct: 452 VSEPRIHHQWLPDELRLEKGF 472
>gnl|CDD|177836 PLN02180, PLN02180, gamma-glutamyl transpeptidase 4.
Length = 639
Score = 179 bits (455), Expect = 4e-51
Identities = 113/311 (36%), Positives = 173/311 (55%), Gaps = 25/311 (8%)
Query: 31 PALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIITEADMNNYNVEIEEPIVAKLKG 90
P LA++ I+E+G A +NG++ + VKD+++AGGIIT D+ +Y V + + + + G
Sbjct: 254 PELAQSLETISEQGPGAFYNGTIGEKLVKDVKKAGGIITMDDLRSYEVLVTDAMSVDVMG 313
Query: 91 NHTLWTSPLPGSGIL-LSFMLEIL----QYLIPAPSELLWHQRIWVT----------GDT 135
+T+ P P G L S +++IL + EL H+ I GD
Sbjct: 314 -YTIHGMPPPSGGTLGFSMVIDILDSYSNLYTASGRELGLHRLIEAMKHMFAARMDLGD- 371
Query: 136 HPEAHNSYSSSINQVVQQLQSQDFIQEIRSQISDNRTWQDIEHYNAKFVPSEDHGTANIV 195
PE N I + Q+ S+ +EI+ +I DN T+ E+Y ++ D GT++
Sbjct: 372 -PEFVN-----ITNAMNQMLSKAHAEEIQKRIFDNTTFPP-EYYLNRWSQLRDQGTSHFC 424
Query: 196 VYSEAGDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFSSPNITNYFHIPPSPANFIQP 255
+ ++V TSTVN FG+ +SPSTGI++N++MDDFS+P +PP+P NFI+P
Sbjct: 425 IVDADRNSVSMTSTVNYGFGAGVLSPSTGIVLNNEMDDFSTPAEITPDMLPPAPTNFIEP 484
Query: 256 GKRPLSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWSNNTLKESVDAARIH 315
KRPLSSM P +IT +DG A+G AGG I ++ QV + N KE+V++ARI+
Sbjct: 485 NKRPLSSMTPLVIT-KDGEFVAALGGAGGMHIIPAVLQVFLNCFVLNMKPKEAVESARIY 543
Query: 316 HQLFPMKYGYE 326
H+L P YE
Sbjct: 544 HRLIPNVVSYE 554
>gnl|CDD|181992 PRK09615, ggt, gamma-glutamyltranspeptidase; Reviewed.
Length = 581
Score = 155 bits (393), Expect = 1e-42
Identities = 100/327 (30%), Positives = 166/327 (50%), Gaps = 11/327 (3%)
Query: 10 SRALFINEKNLTKVENDTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIIT 69
S+A+F E K + D V LAK+ +IAE G DA + G++ +++Q+ GG+IT
Sbjct: 206 SKAIFWKEGEPLK-KGDKLVQANLAKSLEMIAENGPDAFYKGTIADQIAQEMQKNGGLIT 264
Query: 70 EADMNNYNVEIEEPIVAKLKGNHTLWTSPLPGSG-ILLSFMLEILQYLIPAPSELLWHQR 128
+ D+ Y PI +G + +++ P P SG I + +L IL+
Sbjct: 265 KEDLAAYKAVERTPISGDYRG-YQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADA 323
Query: 129 IWVTGDTHPEAHNSYSSS------INQVVQQLQSQDFIQEIRSQISDNRTWQDIEHYNAK 182
+ + + A+ S + Q L ++ + + I QI N+ E K
Sbjct: 324 MQIMAEAEKYAYADRSEYLGDPDFVKVPWQALTNKAYAKSIADQIDINKAKPSSEIRPGK 383
Query: 183 FVPSEDHGTANIVVYSEAGDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFSS-PNITN 241
P E + T + V + G+AV T T+N FG+ V+ ++GIL+N+QMDDFS+ P + N
Sbjct: 384 LAPYESNQTTHFSVVDKDGNAVAVTYTLNTTFGTGIVAGNSGILLNNQMDDFSAKPGVPN 443
Query: 242 YFHIPPSPANFIQPGKRPLSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWS 301
+ + AN + P KRPLSSM P+I+ +DG L G+ GG++I T++ Q+++ ++
Sbjct: 444 VYGLVGGDANAVGPNKRPLSSMSPTIVV-KDGKTWLVTGSPGGSRIITTVLQMVVNSIDY 502
Query: 302 NNTLKESVDAARIHHQLFPMKYGYEYG 328
+ E+ +A R HHQ P + E G
Sbjct: 503 GMNVAEATNAPRFHHQWLPDELRVEKG 529
>gnl|CDD|222443 pfam13900, GVQW, Putative binding domain. This short domain is
often found nested inside other longer domains. The
function is not known, but the domain carries a highly
conserved GVQW motif. The members are rich in proline
and cysteine. This may be a binding domain.
Length = 51
Score = 26.9 bits (60), Expect = 2.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 235 SSPNITNYFHIPPSPANFI 253
S P+ +Y H PP PANF
Sbjct: 31 SLPSSWDYRHHPPRPANFC 49
>gnl|CDD|130567 TIGR01503, MthylAspMut_E, methylaspartate mutase, E subunit. This
model represents the E (epsilon) subunit of
methylaspartate mutase (glutamate mutase), a
cobalamin-dependent enzyme that catalyzes the first step
in a pathway of glutamate fermentation [Energy
metabolism, Amino acids and amines, Energy metabolism,
Fermentation].
Length = 480
Score = 29.4 bits (66), Expect = 3.1
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 34 AKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIITEADMNN 75
+K F +I+ A +G+ TK VK EA GI T
Sbjct: 300 SKAFGVISTATTIAALSGA-TKVIVKSPHEAIGIPTAEANAA 340
>gnl|CDD|222456 pfam13925, Katanin_con80, con80 domain of Katanin. The con80
domain of katanin is the C-terminal region of the
protein that binds to the N-terminal domain of
katanin-p60, the catalytic ATPase. The complex
associates with a specific subregion of the mitotic
spindle leading to increased microtubule disassembly and
targeting of p60 to the spindle poles. The assembly and
function of the mitotic spindle requires the activity of
a number of microtubule-binding proteins. Katanin, a
heterodimeric microtubule-severing ATPase, is found
localized at mitotic spindle poles. A proposed model is
that katanin is targeted to spindle poles through a
combination of direct microtubule binding by the p60
subunit and through interactions between the WD40 domain
and an unknown protein.
Length = 164
Score = 28.8 bits (65), Expect = 3.2
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 295 IMMNLWSNNTLKESVDAAR 313
++ LW N +K ++ AAR
Sbjct: 20 VVRTLWRQNDIKGAIAAAR 38
>gnl|CDD|227202 COG4865, COG4865, Glutamate mutase epsilon subunit [Amino acid
transport and metabolism].
Length = 485
Score = 29.1 bits (65), Expect = 3.7
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 34 AKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIITEADMNN 75
+K F+II+ A +G+ TK K EA GI T A
Sbjct: 302 SKAFAIISWGAAVAGMSGA-TKVITKSPHEAWGIPTAAANIQ 342
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 29.1 bits (66), Expect = 3.8
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 214 FGSRFVSPSTGILVNDQMDDFSSPNITNYFHI 245
+G + +++ ++SS N T HI
Sbjct: 108 YGRSKLGKGKKVVI-----EYSSANPTGPLHI 134
>gnl|CDD|215138 PLN02248, PLN02248, cellulose synthase-like protein.
Length = 1135
Score = 29.2 bits (66), Expect = 3.8
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 215 GSRFVSPSTGILVNDQMDDFSSPNITNY-FHIPPSPANFIQPGKRPLSSMCPSIIT 269
R+VS S L D + SS + NY HIPP+P N GK + SI T
Sbjct: 41 SGRYVSLSRDDL--DLSGELSSSDYLNYTVHIPPTPDNQPMAGKAEEQYVSNSIFT 94
>gnl|CDD|187635 cd08930, SDR_c8, classical (c) SDR, subgroup 8. This subgroup
has a fairly well conserved active site tetrad and
domain size of the classical SDRs, but has an atypical
NAD-binding motif ([ST]G[GA]XGXXG). SDRs are a
functionally diverse family of oxidoreductases that
have a single domain with a structurally conserved
Rossmann fold (alpha/beta folding pattern with a
central beta-sheet), an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Classical SDRs
are typically about 250 residues long, while extended
SDRs are approximately 350 residues. Sequence identity
between different SDR enzymes are typically in the
15-30% range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes catalyze a
wide range of activities including the metabolism of
steroids, cofactors, carbohydrates, lipids, aromatic
compounds, and amino acids, and act in redox sensing.
Classical SDRs have an TGXXX[AG]XG cofactor binding
motif and a YXXXK active site motif, with the Tyr
residue of the active site motif serving as a critical
catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 250
Score = 28.5 bits (64), Expect = 4.3
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 50 NGSLTKAFVKDIQEAGGIITEADMNNYNVEIEEPIVAKLKGNHTLW 95
G + KAF K + AG + AD+N +E + + L N +
Sbjct: 11 AGLIGKAFCKALLSAGARLILADINAPALEQLKEELTNLYKNRVIA 56
>gnl|CDD|214491 smart00052, EAL, Putative diguanylate phosphodiesterase. Putative
diguanylate phosphodiesterase, present in a variety of
bacteria.
Length = 242
Score = 28.3 bits (64), Expect = 4.6
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 146 SINQVVQQLQSQDFIQEIRSQI 167
SIN +QL S D + + +
Sbjct: 89 SINLSARQLISPDLVPRVLELL 110
>gnl|CDD|115050 pfam06368, Met_asp_mut_E, Methylaspartate mutase E chain (MutE).
This family consists of several methylaspartate mutase E
chain proteins (EC:5.4.99.1). Glutamate mutase catalyzes
the first step in the fermentation of glutamate by
Clostridium tetanomorphum. This is an unusual
isomerisation in which L-glutamate is converted to
threo-beta-methyl L-aspartate.
Length = 441
Score = 28.6 bits (64), Expect = 6.2
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 34 AKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIITEADMNN 75
+K + +I+E A +G+ TK VK EA GI T
Sbjct: 261 SKAYGLISESTTIAALSGT-TKVIVKTPHEASGIPTAEANAA 301
>gnl|CDD|115702 pfam07066, DUF3882, Lactococcus phage M3 protein. This family
consists of several Lactococcus phage middle-3 (M3)
proteins of around 160 residues in length. The function
of this family is unknown.
Length = 162
Score = 27.6 bits (61), Expect = 7.1
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 54 TKAFVKDIQEAGGIITEADMNNYNVEIEEPIVA-KLKGNHTL 94
I++ II E D+ +Y + IEEPI+ K KGN +L
Sbjct: 49 AFDIADAIKD---IIDEFDLFDYFIAIEEPIIGFKRKGNISL 87
>gnl|CDD|176507 cd08564, GDPD_GsGDE_like, Glycerophosphodiester phosphodiesterase
domain of putative Galdieria sulphuraria
glycerophosphodiester phosphodiesterase and similar
proteins. This subfamily corresponds to the
glycerophosphodiester phosphodiesterase domain (GDPD)
present in putative Galdieria sulphuraria
glycerophosphodiester phosphodiesterase (GsGDE, EC
3.1.4.46) and its uncharacterized eukaryotic homologs.
Members in this family show high sequence similarity to
Escherichia coli GP-GDE, which catalyzes the
degradation of glycerophosphodiesters to produce
sn-glycerol-3-phosphate (G3P) and the corresponding
alcohols.
Length = 265
Score = 27.8 bits (62), Expect = 7.1
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 1 MLTNSLFTFSRALFINEKNLTKVENDTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKD 60
N+L +F RAL E + VE D V+ L K I+ G + N +
Sbjct: 18 YPENTLPSFRRAL---EIGVDGVELD--VF--LTKDNEIVVFHGTEDDTNPDTSIQLDDS 70
>gnl|CDD|112483 pfam03668, ATP_bind_2, P-loop ATPase protein family. This family
contains an ATP-binding site and could be an ATPase
(personal obs:C Yeats).
Length = 284
Score = 27.5 bits (61), Expect = 9.6
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 237 PNITNYFHIPPSPANFIQPGKRPLSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIM 296
+ +Y A FI+ +R LS P + + +A+G GG + IA+ +
Sbjct: 205 KPVADYVLHHTEVAEFIESTRRLLSLWLPMYEREGKSYLTIAIGCTGGKHRSVYIAEQLA 264
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 27.8 bits (62), Expect = 9.8
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 51 GSLTKAFVKDIQEAGGIITEADMNNYNVEIEEPIVAKLKG 90
G+L A + +E GG I E+ + +V KG
Sbjct: 224 GALVDALAELAREHGGEIR------TGAEVSQILVEGGKG 257
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.395
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,004,837
Number of extensions: 1723243
Number of successful extensions: 1642
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1620
Number of HSP's successfully gapped: 33
Length of query: 350
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 252
Effective length of database: 6,590,910
Effective search space: 1660909320
Effective search space used: 1660909320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)