RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11450
(350 letters)
>2e0w_A Gamma-glutamyltranspeptidase; NTN hydrolase, precursor, gamma-GTP,
post-translational PROC maturation, transferase; 2.55A
{Escherichia coli K12} SCOP: d.153.1.6
Length = 556
Score = 298 bits (765), Expect = 2e-97
Identities = 103/358 (28%), Positives = 170/358 (47%), Gaps = 31/358 (8%)
Query: 10 SRALFINEKNLTKVENDTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIIT 69
S+A+F E K + DT V LAK+ +IAE G D + G++ + +++Q+ GG+IT
Sbjct: 181 SKAIFWKEGEPLK-KGDTLVQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLIT 239
Query: 70 EADMNNYNVEIEEPIVAKLKGNHTLWTSPLPGSG-ILLSFMLEILQYL----IPAPSELL 124
+ D+ Y PI +G + +++ P P SG I + +L IL+ S
Sbjct: 240 KEDLAAYKAVERTPISGDYRG-YQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADA 298
Query: 125 WH-----------QRIWVTGDTHPEAHNSYSSSINQVVQQLQSQDFIQEIRSQISDNRTW 173
R GD P+ Q L ++ + + I QI N+
Sbjct: 299 MQIMAEAEKYAYADRSEYLGD--PDFVKVP-------WQALTNKAYAKSIADQIDINKAK 349
Query: 174 QDIEHYNAKFVPSEDHGTANIVVYSEAGDAVVATSTVNLVFGSRFVSPSTGILVNDQMDD 233
E K P E + + V + G+AV T T+N FG+ V+ +GIL+N+QMDD
Sbjct: 350 PSSEIRPGKLAPYESNQATHYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDD 409
Query: 234 FSS-PNITNYFHIPPSPANFIQPGKRPLSSMCPSIITDQDGNVKLAVGAAGGTKITTSIA 292
FS+ P + N + + AN + P KRPLSSM P+I+ DG L G+ GG++I T++
Sbjct: 410 FSAKPGVPNVYGLVGGDANAVGPNKRPLSSMSPTIVVK-DGKTWLVTGSPGGSRIITTVL 468
Query: 293 QVIMMNLWSNNTLKESVDAARIHHQLFPMKYGYEYGVLRSIIEGMER--HEWFVRHQY 348
Q+++ ++ + E+ +A R HHQ P + E G ++ +E + ++
Sbjct: 469 QMVVNSIDYGLNVAEATNAPRFHHQWLPDELRVEKGFSPDTLKLLEAKGQKVALKEAM 526
>2dg5_B Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT,
gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli
K12} SCOP: d.153.1.6 PDB: 2dbu_B 2dbw_B* 2dbx_B* 2e0x_B
2e0y_B 2z8i_B* 2z8j_B* 2z8k_B*
Length = 190
Score = 209 bits (535), Expect = 1e-67
Identities = 54/150 (36%), Positives = 87/150 (58%), Gaps = 2/150 (1%)
Query: 191 TANIVVYSEAGDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFSS-PNITNYFHIPPSP 249
T + V + G+AV T T+N FG+ V+ +GIL+N+QMDDFS+ P + N + +
Sbjct: 1 TTHYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGD 60
Query: 250 ANFIQPGKRPLSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWSNNTLKESV 309
AN + P KRPLSSM P+I+ DG L G+ GG++I T++ Q+++ ++ + E+
Sbjct: 61 ANAVGPNKRPLSSMSPTIVVK-DGKTWLVTGSPGGSRIITTVLQMVVNSIDYGLNVAEAT 119
Query: 310 DAARIHHQLFPMKYGYEYGVLRSIIEGMER 339
+A R HHQ P + E G ++ +E
Sbjct: 120 NAPRFHHQWLPDELRVEKGFSPDTLKLLEA 149
>2qmc_B GGT, gamma-glutamyltranspeptidase; NTN-hydrolase, transferase; HET:
GTB; 1.55A {Helicobacter pylori} PDB: 2qm6_B* 2nqo_B*
3fnm_B*
Length = 188
Score = 190 bits (485), Expect = 4e-60
Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 5/152 (3%)
Query: 201 GDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFSS-PNITNYFHIPPSPANFIQPGKRP 259
G+AV T T+N +GS G L+N++MDDFS P N + + AN I+ KRP
Sbjct: 11 GNAVSVTYTINASYGSAASIDGAGFLLNNEMDDFSIKPGNPNLYGLVGGDANAIEANKRP 70
Query: 260 LSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWSNNTLKESVDAARIHHQLF 319
LSSM P+I+ + V L VG+ GG++I T++ QVI + N + E+V A R H Q
Sbjct: 71 LSSMSPTIVLK-NNKVFLVVGSPGGSRIITTVLQVISNVIDYNMNISEAVSAPRFHMQWL 129
Query: 320 PMKYGYE-YGVLRSIIEGMER--HEWFVRHQY 348
P + E +G+ + + + + ++ +
Sbjct: 130 PDELRIEKFGMPADVKDNLTKMGYQIVTKPVM 161
>2nlz_A Cephalosporin acylase; structural genomics, protein structure
initiative, PSI, nysgxrc; 2.70A {Bacillus halodurans}
SCOP: d.153.1.6
Length = 547
Score = 163 bits (414), Expect = 7e-46
Identities = 70/337 (20%), Positives = 125/337 (37%), Gaps = 55/337 (16%)
Query: 26 DTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIITEADMNNYNVEIEEPIV 85
+ + A T IAE G++ + G L + GG +T+ D+ Y E EPI
Sbjct: 197 EVWRSQGHADTLRSIAESNGESFYRGELADQIHAFFDKHGGYLTKEDLACYRPEWVEPIS 256
Query: 86 AKLKGNHTLWTSPLPGSGILLSFMLEILQ-YLIPAP-SELLWHQ-----------RIWVT 132
+G + +W P G G++ L I++ + + +H+ +
Sbjct: 257 IDYRG-YRVWEIPPNGQGLVALEALNIVKGFEFYHKDTVDTYHKQIEAMKLAFVDGMKYV 315
Query: 133 GDTHPEAHNSYSSSINQVVQQLQSQDFIQEIRSQISDNRTWQDIEHYNAKFVPSEDHGTA 192
+ + S S V+QL S ++ E R +I + + GT
Sbjct: 316 TEP---SDMSVS------VEQLLSDEYATERRKEIGEQAL-------TPEPGTPPRGGTV 359
Query: 193 NIVVYSEAGDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFSSPNITNYFHIPPSPANF 252
+ G+ V + + FGS V P TGI + ++ +FS + P+ N
Sbjct: 360 YLATADGDGNMVSFIQSNYMGFGSGVVVPGTGIAMQNRGHNFS---------LDPNHDNA 410
Query: 253 IQPGKRPLSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIM------MNLWSNNTLK 306
++PGKR ++ P +T ++ G GG QV+M +N +
Sbjct: 411 LKPGKRTYHTIIPGFLT-KNDQPIGPFGVMGGFMQPQGHMQVMMNTIDFGLN------PQ 463
Query: 307 ESVDAARIHHQLFPMKYGYEYGVLRSIIEGMER--HE 341
++DA R + E I + + R H+
Sbjct: 464 AALDAPRWQW-TNGKQVQVEPTFPVDIAQALVRRGHK 499
>2v36_B Gamma-glutamyltranspeptidase small chain; transferase, glutathione
biosynthesis, gamma-glutamyl transferase,
acyltransferase, zymogen; 1.85A {Bacillus subtilis} PDB:
3a75_B*
Length = 193
Score = 145 bits (369), Expect = 1e-42
Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 191 TANIVVYSEAGDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFSSPNITNYFHIPPSPA 250
T + V G+ V T+T+ +FG+ + P G+++N+++ DF P A
Sbjct: 1 TTHFTVADRWGNVVSYTTTIEQLFGTGIMVPDYGVILNNELTDFD---------AIPGGA 51
Query: 251 NFIQPGKRPLSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWSNNTLKESVD 310
N +QP KRPLSSM P+I+ D L VG+ GG I +S+ Q I+ ++ LK +V+
Sbjct: 52 NEVQPNKRPLSSMTPTILFK-DDKPVLTVGSPGGATIISSVLQTILYHIEYGMELKAAVE 110
Query: 311 AARIHHQLFPMKYGYEYGVLRSIIEGMER--HEWFVR 345
RI+ Y YE GV + ++ + H++
Sbjct: 111 EPRIYTNSMS-SYRYEDGVPKDVLSKLNGMGHKFGTS 146
>3g9k_S Capsule biosynthesis protein CAPD; CAPD protein, the great lakes
regional C excellence, GLRCE, capsule
biogenesis/degradation; HET: GLU; 1.79A {Bacillus
anthracis} PDB: 3ga9_S*
Length = 177
Score = 138 bits (350), Expect = 4e-40
Identities = 29/149 (19%), Positives = 62/149 (41%), Gaps = 17/149 (11%)
Query: 191 TANIVVYSEAGDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFSSPNITNYFHIPPSPA 250
T + V+ G V +T+T++ FG+ + G +N+Q+ +F
Sbjct: 1 TTHFVIIDRDGTVVSSTNTLSNFFGTGKYT--AGFFLNNQLQNFG-----------SEGF 47
Query: 251 NFIQPGKRPLSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWSNNTLKESVD 310
N +PGKR + M P+++ DG + +G+ GG +I + ++ +L++ ++
Sbjct: 48 NSYEPGKRSRTFMAPTVLKK-DGET-IGIGSPGGNRIPQILTPILDKYTHGKGSLQDIIN 105
Query: 311 AARIHHQLFPMKYGYEYGVLRSIIEGMER 339
R + E + + + R
Sbjct: 106 EYRFTFE--KNTAYTEIQLSSEVKNELSR 132
>2v36_A Gamma-glutamyltranspeptidase large chain; transferase, glutathione
biosynthesis, gamma-glutamyl transferase,
acyltransferase, zymogen; 1.85A {Bacillus subtilis} PDB:
3a75_A*
Length = 376
Score = 93.4 bits (233), Expect = 2e-21
Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 33/199 (16%)
Query: 24 ENDTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIITEADMNNYNVEIEEP 83
E DT + LAKTF +I +G DA + G K +Q+ GG +TE D+ NY++ I+EP
Sbjct: 190 EGDTLIQKDLAKTFKLIRSKGTDAFYKGKFAKTLSDTVQDFGGSMTEKDLENYDITIDEP 249
Query: 84 IVAKLKGNHTLWTSPLPGS-GILLSFMLEILQYL----IPAPSELLWH-----QRI---- 129
I +G + + T+P P S GI L M +IL + S + +
Sbjct: 250 IWGDYQG-YQIATTPPPSSGGIFLLQMPKILDHFNLSQYDVRSWEKYQLLAETMHLSYAD 308
Query: 130 ---WVTGDTHPEAHNSYSSSINQV-VQQLQSQDFIQEIRSQISDNRTWQDIEHYNAKFVP 185
+ GD V ++ L D+I+E + I+ ++ + + +
Sbjct: 309 RASYA-GDP----------EFVNVPLKGLLHPDYIKERQQLINLDQVNKKPKAGDP---W 354
Query: 186 SEDHGTANIVVYSEAGDAV 204
G+AN + D V
Sbjct: 355 KYQEGSANYKQVEQPKDKV 373
>2i3o_A Gamma-glutamyltransferase related protein; structural genomics,
PSI, protein structure initiative; 2.03A {Thermoplasma
acidophilum} SCOP: d.153.1.6
Length = 516
Score = 91.8 bits (229), Expect = 1e-20
Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 22/123 (17%)
Query: 201 GDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFSSPNITNYFHIPPSPANFIQPGKRPL 260
G +V + + FGS V TG ++ ++ F+ + N + PGKR
Sbjct: 341 GRSVSIIQSNYMGFGSGIVPKGTGFVLQNRGSYFT---------LQRDHPNALMPGKRTF 391
Query: 261 SSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIM------MNLWSNNTLKESVDAARI 314
++ ++ ++ ++ ++G+ GG Q++M + + +D R
Sbjct: 392 HTLAACMVE-KEHDLYASLGSMGGDIQPQVQMQILMEILKDNTD------PQAILDKPRW 444
Query: 315 HHQ 317
Sbjct: 445 TEP 447
Score = 84.1 bits (209), Expect = 4e-18
Identities = 18/89 (20%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 26 DTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIITEADMNNYNVEIEEPIV 85
+ P LA++F +++EEG + ++GSL + ++ G +++ D+ Y I +P+
Sbjct: 181 EILKQPDLAESFRLMSEEGFRSFYDGSLADIIIAGLEGTGSPLSDRDLRVYRPLIGKPVF 240
Query: 86 AKLKGNHTLWTSPLPGSGILLSFMLEILQ 114
L ++ + GI + + ++
Sbjct: 241 TDLDE-FRIYETSPNSQGITVIEWIRGME 268
>2qmc_A GGT, gamma-glutamyltranspeptidase; NTN-hydrolase, transferase; HET:
GTB; 1.55A {Helicobacter pylori} PDB: 2qm6_A* 3fnm_A*
2nqo_A
Length = 377
Score = 90.4 bits (225), Expect = 2e-20
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 10 SRALFINEKNLTKVENDTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIIT 69
S+ F + +L E D +V LAKT + I G + G + + KD+++ GGIIT
Sbjct: 191 SKKYFFKKGHLDYQEGDLFVQKDLAKTLNQIKTLGAKGFYQGQVAELIEKDMKKNGGIIT 250
Query: 70 EADMNNYNVEIEEPIVAKLKGNHTLWTSPLPGS-GILLSFMLEILQ 114
+ D+ +YNV+ +P+V +G + + + P S G L +L +++
Sbjct: 251 KEDLASYNVKWRKPVVGSYRG-YKIISMSPPSSGGTHLIQILNVME 295
>2dg5_A Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT,
gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli
K12} SCOP: d.153.1.6 PDB: 2dbu_A 2dbw_A* 2dbx_A* 2e0x_A
2e0y_A 2z8i_A* 2z8j_A* 2z8k_A*
Length = 366
Score = 86.4 bits (215), Expect = 3e-19
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 31/183 (16%)
Query: 7 FTFSRALFINEKNLTKVENDTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGG 66
S+A+F E K DT V LAK+ +IAE G D + G++ + +++Q+ GG
Sbjct: 178 HENSKAIFWKEGEPLKK-GDTLVQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGG 236
Query: 67 IITEADMNNYNVEIEEPIVAKLKGNHTLWTSPLPGS-GILLSFMLEILQYL----IPAPS 121
+IT+ D+ Y PI +G + +++ P P S GI + +L IL+ S
Sbjct: 237 LITKEDLAAYKAVERTPISGDYRG-YQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGS 295
Query: 122 ELLWH-----QRI-------WVTGDTHPEAHNSYSSSINQV-VQQLQSQDFIQEIRSQIS 168
++ ++ GD +V Q L ++ + + I QI
Sbjct: 296 ADAMQIMAEAEKYAYADRSEYL-GDP----------DFVKVPWQALTNKAYAKSIADQID 344
Query: 169 DNR 171
N+
Sbjct: 345 INK 347
>3g9k_L Capsule biosynthesis protein CAPD; CAPD protein, the great lakes
regional C excellence, GLRCE, capsule
biogenesis/degradation; HET: GLU; 1.79A {Bacillus
anthracis} PDB: 3ga9_L*
Length = 323
Score = 80.3 bits (199), Expect = 3e-17
Identities = 33/184 (17%), Positives = 70/184 (38%), Gaps = 35/184 (19%)
Query: 6 LFTFSRALFINEKNLTKVENDTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAG 65
+++ ++F + +T + LA+T I +EG + G + +A
Sbjct: 152 IYSDKLSIFYPNGEPIET-GETLIQTDLARTLKKIQKEGAKGFYEGGVARAIS-----KT 205
Query: 66 GIITEADMNNYNVEIEEPIVAKLKGNHTLWTSPLPGSGILLSFMLEILQYL----IPAPS 121
I+ D+ Y VE+ +P+ G + ++T+P P SG+ L ML++ + +
Sbjct: 206 AKISLEDIKGYKVEVRKPVKGNYMG-YDVYTAPPPFSGVTLLQMLKLAEKKEVYKDVDHT 264
Query: 122 ELLWH-----QRI-------WVTGDTHPEAHNSYSSSINQV-VQQLQSQDFIQEIRSQIS 168
RI + GD P + ++ S +I ++++
Sbjct: 265 ATYMSKMEEISRIAYQDRKKNL-GD--PNY--------VNMDPNKMVSDKYISTMKNENG 313
Query: 169 DNRT 172
D +
Sbjct: 314 DALS 317
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 4e-05
Identities = 37/313 (11%), Positives = 91/313 (29%), Gaps = 110/313 (35%)
Query: 45 GDALHNGSLTKAFVKD-----IQEA-GGIITEADMNNYNVEIEEPIVAKLKGNHT---LW 95
D L AFV + +Q+ I+++ EI+ I++K + T W
Sbjct: 19 KDILSV--FEDAFVDNFDCKDVQDMPKSILSKE-------EIDHIIMSKDAVSGTLRLFW 69
Query: 96 TSPLPGSGILLSFMLEILQ-------------YLIPAPSELLW---HQRIWVTGD----- 134
T ++ F+ E+L+ P+ ++ R++
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 135 --THPEAHNSYSSSINQVVQQLQSQDFI--------------------QEIRSQISDNRT 172
+ + + + Q + +L+ + +++ ++
Sbjct: 130 NVSRLQPYLK----LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 173 WQDIEHYN-----------------AKFVPSEDHGTANIVVYSEAGDAVVATSTVNLVFG 215
W ++++ N + DH + + + L+
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-----RLLKS 240
Query: 216 SRFVSPSTGILVNDQMDDFSSPNITNYFHIPPSPANFIQPGKRPLSSMCPSIITDQDGNV 275
+ +LV + + + N F++ C ++T + V
Sbjct: 241 KPYE---NCLLV---LLNVQNAKAWNAFNL-----------------SCKILLTTRFKQV 277
Query: 276 KLAVGAAGGTKIT 288
+ AA T I+
Sbjct: 278 TDFLSAATTTHIS 290
Score = 29.8 bits (66), Expect = 1.9
Identities = 37/215 (17%), Positives = 68/215 (31%), Gaps = 77/215 (35%)
Query: 140 HNSYSSSINQVVQQLQSQDFIQEIRSQISDNRTWQDIEHYNAKFVPSE--DHGTANIVVY 197
H+ + Q Q +D + DN +D++ + E DH I+
Sbjct: 4 HHHMDFETGE--HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH----II-- 55
Query: 198 SEAGDAVVATSTVNLVFGSRFVSPSTGI--LVNDQMDDFSSPNITNYFHIPPSPANFIQP 255
+ DAV T +F + + V + + NY F+
Sbjct: 56 -MSKDAVSGT---LRLFWTLLSKQEEMVQKFVEEVLRI-------NY--------KFL-- 94
Query: 256 GKRPLSSMC--PSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWSNNTL--KESVDA 311
P+ + PS++T I Q L+++N + K +V
Sbjct: 95 -MSPIKTEQRQPSMMTR------------------MYIEQR--DRLYNDNQVFAKYNV-- 131
Query: 312 ARIHH---------QLFPMKYGYEYGVLRSIIEGM 337
+R+ +L P K V +I+G+
Sbjct: 132 SRLQPYLKLRQALLELRPAKN-----V---LIDGV 158
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 3e-04
Identities = 72/416 (17%), Positives = 126/416 (30%), Gaps = 146/416 (35%)
Query: 2 LTNSLFTFSRALFINEKNL------TKVENDTYVWPALAKTFSII---------AEEGGD 46
L L F ++ ++ ENDT L KT +I A+ D
Sbjct: 84 LNLCLTEFENC-YLEGNDIHALAAKLLQENDT----TLVKTKELIKNYITARIMAKRPFD 138
Query: 47 ALHNGSLTKAFVKDIQEA------GGIITEADMNNYNVEIEEPIVAKLKGNHTLWTSPLP 100
N +L +A V + A GG + + ++Y EE L+ L+ +
Sbjct: 139 KKSNSALFRA-VGE-GNAQLVAIFGG---QGNTDDY---FEE-----LR---DLYQTYHV 182
Query: 101 GSGILLSFMLEILQYLIPAPSEL--LWHQRI----WVTG-DTHPE----AHNSYSSSINQ 149
G L+ F E L LI + ++ Q + W+ P+ S +
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 150 VVQQLQSQDFIQEIRSQISDNRTWQDIEHYNAKFVPSEDHGTANIVVYSEAGDAVVATST 209
V+Q + HY V ++ G E + +
Sbjct: 243 VIQ-----------------------LAHY---VVTAKLLG----FTPGELRSYLKGATG 272
Query: 210 VNL-VFGSRFVSPSTGILVNDQMDDF---SSPNITNYFHIPPSPANFIQPGKR-----PL 260
+ + + ++ + D + F IT F I G R P
Sbjct: 273 HSQGLVTAVAIAET------DSWESFFVSVRKAITVLFFI----------GVRCYEAYPN 316
Query: 261 SSMCPSIITDQDGNVK------LAVGAAGGTKITTSIAQVIMMNLWSNNTLKESVDAARI 314
+S+ PSI+ D N + L++ ++ + + N+ L ++
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT-------NSHLPAG---KQV 366
Query: 315 HHQLF--PMKY---GYE---YGV---LRSI----------IEGMERHEWFVRHQYL 349
L G YG+ LR I ER F +++L
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS-NRFL 421
Score = 30.0 bits (67), Expect = 1.4
Identities = 24/119 (20%), Positives = 37/119 (31%), Gaps = 50/119 (42%)
Query: 6 LFTFSRALF--INEKNLTKVENDTYV-------WPAL---AKTFSI-------------I 40
L +A F + K L + D + AL A SI +
Sbjct: 1736 LTLMEKAAFEDLKSKGL--IPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTM 1793
Query: 41 AE-----EGGD------ALHNGSLTKAF--------VKDIQEAGGIITE-ADMNNYNVE 79
E G A++ G + +F V+ + + G + E NYNVE
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV---NYNVE 1849
Score = 27.7 bits (61), Expect = 7.3
Identities = 40/235 (17%), Positives = 66/235 (28%), Gaps = 89/235 (37%)
Query: 127 QRIWVTGDTHPEAHNSYSSSINQVVQQLQSQDFI-------QEIR--------SQISDNR 171
Q +W D H + ++Y SI +V I + IR I D +
Sbjct: 1643 QDVWNRADNHFK--DTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 172 TW-----QDIEHYNAKFVPSEDHG----TAN----IVVYSEA------------GDAVVA 206
++I ++ + + G T + + +A DA A
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFA 1760
Query: 207 -------------------TSTVNLVFGSRFVSPSTGILVNDQMDDFSSPNITNYFHIPP 247
S V +VF R G+ + + +NY I
Sbjct: 1761 GHSLGEYAALASLADVMSIESLVEVVF-YR------GMTMQVAVPR-DELGRSNYGMI-- 1810
Query: 248 SPANFIQPGKRPLSSMCPSIITDQDGNVKLAVGAAGGTKITTSIA-------QVI 295
A I PG+ + S + V VG G + I Q +
Sbjct: 1811 --A--INPGR-----VAASFSQEALQYVVERVGKRTGWLV--EIVNYNVENQQYV 1854
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.19
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 17 EKN-LTKVENDTYVW-----PALAKTFSI 39
EK L K++ ++ PALA ++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
>3sxu_B DNA polymerase III subunit PSI; DNA replication, CHI binds to SSB
and PSI, transferase; HET: DNA; 1.85A {Escherichia coli}
PDB: 1em8_B* 3gli_O*
Length = 138
Score = 30.8 bits (69), Expect = 0.28
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 16/91 (17%)
Query: 104 ILLSFMLEILQYLIPAPSELLW-----HQRIWVTGDTHPEAHNSYSSSINQVVQQLQSQD 158
+L + + Q L P ++ H W G P + Q+ S
Sbjct: 58 VLRALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLE---------GAQVASPA 108
Query: 159 FIQEIRSQISDNRT-WQDIEHYNAKFVPSED 188
++R+ + WQ I Y F P D
Sbjct: 109 L-TDLRANPTARAALWQQICTYEHDFFPRND 138
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn
complex, rRNA processing, transferase; HET: ADP; 1.75A
{Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB:
1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Length = 282
Score = 28.4 bits (63), Expect = 3.2
Identities = 2/18 (11%), Positives = 11/18 (61%)
Query: 325 YEYGVLRSIIEGMERHEW 342
+ + ++ +I + + +E+
Sbjct: 13 HSWRIMDAIFKNLWDYEY 30
>1lbv_A Fbpase/impase, fructose 1,6-bisphosphatase/inositol
monophosphatase; dual activity, archaeal phosphatase,
APO- form, hydrolase; 1.80A {Archaeoglobus fulgidus}
SCOP: e.7.1.1 PDB: 1lbw_A 1lbx_A* 1lby_A* 1lbz_A*
Length = 252
Score = 28.1 bits (63), Expect = 4.4
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 19/59 (32%)
Query: 61 IQEAGGIITEADMNNYNVEIEEP-----IVAKLKGNHTLWTSPLPGSGILLSFMLEILQ 114
++AGG +TE D + + + IVA + L +LE+++
Sbjct: 208 AEKAGGKVTELDGESLGNKKFDMQERLNIVA--------------ANEKLHPKLLELIK 252
>3t0j_A Impase II, inositol monophosphatase family protein; FIG
superfamily, hydrolase; HET: PG4; 2.59A {Staphylococcus
aureus}
Length = 283
Score = 28.0 bits (63), Expect = 4.7
Identities = 3/26 (11%), Positives = 7/26 (26%)
Query: 61 IQEAGGIITEADMNNYNVEIEEPIVA 86
+ E G + + I+
Sbjct: 224 LYEVNGQASNLLGEPLTISGPNSILV 249
>3ryd_A Inositol monophosphatase family protein; impase fold, FIG
superfamily protein, hydrolase; HET: SRT; 2.37A
{Staphylococcus aureus} PDB: 3qmf_A
Length = 273
Score = 28.0 bits (63), Expect = 4.8
Identities = 6/54 (11%), Positives = 13/54 (24%), Gaps = 14/54 (25%)
Query: 61 IQEAGGIITEADMNNYNVEIEEPIVAKLKGNHTLWTSPLPGSGILLSFMLEILQ 114
+ +T D + P + + +L+IL
Sbjct: 225 AELLNLKMTTLDGKAIDHLKGAPFII--------------SNKACHETVLKILN 264
>3o72_A EFEB, redox component of A tripartite ferrous iron TRAN; EFEB in
complex with heme, heme deferrochelatase, heme bindi
binding protein; HET: HEM; 1.95A {Escherichia coli} PDB:
2y4f_A* 2wx6_A* 2wx7_A* 2y4d_A* 2y4e_A*
Length = 396
Score = 27.8 bits (61), Expect = 5.0
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 216 SRFVSPSTGILVNDQMDDFSSPNITNYFHIPPS 248
+ L + ++++ P YF P
Sbjct: 341 EKGFLTVQKRLNGEALEEYVKPIGGGYFFALPG 373
>2p3n_A Inositol-1-monophosphatase; tetramer, hydrolase; 2.20A {Thermotoga
maritima} PDB: 2p3v_A*
Length = 256
Score = 27.9 bits (63), Expect = 5.2
Identities = 7/54 (12%), Positives = 22/54 (40%), Gaps = 15/54 (27%)
Query: 61 IQEAGGIITEADMNNYNVEIEEPIVAKLKGNHTLWTSPLPGSGILLSFMLEILQ 114
++EAGG++T+ N + + +G++ +++++
Sbjct: 209 VKEAGGMVTDFSGKEANAFSKN-FIF--------------SNGLIHDEVVKVVN 247
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A
{Staphylococcus aureus subsp} PDB: 3t07_A*
Length = 606
Score = 27.9 bits (63), Expect = 5.8
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 43 EGGDALHNGSLTKAFVKDIQEAGGIITE 70
+ S+ + FV +++A G+ITE
Sbjct: 526 LSDKVIVTNSIDETFVPYVEKALGLITE 553
>2qfl_A Inositol-1-monophosphatase; impase extragenic suppressor,
dimerization, hydrolase; 1.90A {Escherichia coli}
Length = 267
Score = 27.1 bits (61), Expect = 7.9
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 15/54 (27%)
Query: 61 IQEAGGIITEADMNNYNVEIEEPIVAKLKGNHTLWTSPLPGSGILLSFMLEILQ 114
++EAGGI+++ + + IVA G+ ++ ML ++
Sbjct: 220 VREAGGIVSDFTGGHNYMLTGN-IVA--------------GNPRVVKAMLANMR 258
>2a8j_A Taspase 1, threonine aspartase 1; MLL, glycosylspraginase,
asparaginase, hydrolase; 1.90A {Homo sapiens} PDB:
2a8i_A 2a8m_A 2a8l_A
Length = 420
Score = 27.2 bits (60), Expect = 8.9
Identities = 10/73 (13%), Positives = 24/73 (32%)
Query: 137 PEAHNSYSSSINQVVQQLQSQDFIQEIRSQISDNRTWQDIEHYNAKFVPSEDHGTANIVV 196
P + ++ + +++ ++ +D + + K S T VV
Sbjct: 180 PSCPPNIMTTRFSLAAFKRNKRKLELAERVDTDFMQLKKRRQSSEKENDSGTLDTVGAVV 239
Query: 197 YSEAGDAVVATST 209
G+ A S+
Sbjct: 240 VDHEGNVAAAVSS 252
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic;
2.68A {Leishmania infantum}
Length = 227
Score = 27.0 bits (60), Expect = 9.2
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 9/71 (12%)
Query: 129 IWVTGDTHPEAHNSYSSSINQ----VVQQLQSQDFIQEIRSQ----ISDNRTWQDIEHYN 180
T D HPE H S+ + VQ + +Q + Q + Y+
Sbjct: 77 QVATQDWHPENHCSFVTHGGPWPPHCVQGSAGAQLHAGLHTQRINAVIRKGVTQQADSYS 136
Query: 181 AKFVPSEDHGT 191
A FV T
Sbjct: 137 A-FVEDNGVST 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.395
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,404,083
Number of extensions: 322710
Number of successful extensions: 792
Number of sequences better than 10.0: 1
Number of HSP's gapped: 766
Number of HSP's successfully gapped: 41
Length of query: 350
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 256
Effective length of database: 4,077,219
Effective search space: 1043768064
Effective search space used: 1043768064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)