RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11450
(350 letters)
>g2dg5.1 d.153.1.6 (A:37-387,B:391-580)
Gamma-glutamyltranspeptidase, GGT {Escherichia coli
[TaxId: 562]}
Length = 541
Score = 192 bits (488), Expect = 4e-57
Identities = 92/333 (27%), Positives = 157/333 (47%), Gaps = 11/333 (3%)
Query: 14 FINEKNLTKVENDTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIITEADM 73
++ + DT V LAK+ +IAE G D + G++ + +++Q+ GG+IT+ D+
Sbjct: 172 IFWKEGEPLKKGDTLVQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLITKEDL 231
Query: 74 NNYNVEIEEPIVAKLKGNHTLWTSPLPGSGILLSFMLEILQYLIPAPSELLWHQRIWVTG 133
Y PI +G P GI + +L IL+ + +
Sbjct: 232 AAYKAVERTPISGDYRGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADAMQIMA 291
Query: 134 DTHPEA------HNSYSSSINQVVQQLQSQDFIQEIRSQISDNRTWQDIEHYNAKFVPSE 187
+ A + + Q L ++ + + I QI N+ E K P
Sbjct: 292 EAEKYAYADRSEYLGDPDFVKVPWQALTNKAYAKSIADQIDINKAKPSSEIRPGKLAP-- 349
Query: 188 DHGTANIVVYSEAGDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFSS-PNITNYFHIP 246
+ T + V + G+AV T T+N FG+ V+ +GIL+N+QMDDFS+ P + N + +
Sbjct: 350 -YETTHYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLV 408
Query: 247 PSPANFIQPGKRPLSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWSNNTLK 306
AN + P KRPLSSM P+I+ +DG L G+ GG++I T++ Q+++ ++ +
Sbjct: 409 GGDANAVGPNKRPLSSMSPTIV-VKDGKTWLVTGSPGGSRIITTVLQMVVNSIDYGLNVA 467
Query: 307 ESVDAARIHHQLFPMKYGYEYGVLRSIIEGMER 339
E+ +A R HHQ P + E G ++ +E
Sbjct: 468 EATNAPRFHHQWLPDELRVEKGFSPDTLKLLEA 500
>g2nqo.1 d.153.1.6 (A:29-375,B:380-565)
Gamma-glutamyltranspeptidase, GGT {Helicobacter pylori
[TaxId: 210]}
Length = 533
Score = 178 bits (453), Expect = 3e-52
Identities = 89/324 (27%), Positives = 153/324 (47%), Gaps = 13/324 (4%)
Query: 24 ENDTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIITEADMNNYNVEIEEP 83
E D +V LAKT + I G + G + + KD+++ GGIIT+ D+ +YNV+ +P
Sbjct: 179 EGDLFVQKDLAKTLNQIKTLGAKGFYQGQVAELIEKDMKKNGGIITKEDLASYNVKWRKP 238
Query: 84 IVAKLKGNHTLWTSPLPGSGILLSFMLEILQYLIPAPSELLWHQRIWVTGDTHPEAHNSY 143
+V +G + SP G L +L +++ + + I + + +A+
Sbjct: 239 VVGSYRGYKIISMSPPSSGGTHLIQILNVMENADLSALGYGASKNIHIAAEAMRQAYADR 298
Query: 144 SSSINQV------VQQLQSQDFIQEIRSQISDNRTWQDIEHYNAKFVPSEDHGTANIVVY 197
S + V +L ++ + ++I I + + T + V
Sbjct: 299 SVYMGDADFVSVPVDKLINKAYAKKIFDTIQPDTVTPSSQIKPGMG----QLHTTHYSVA 354
Query: 198 SEAGDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFS-SPNITNYFHIPPSPANFIQPG 256
G+AV T T+N +GS G L+N++MDDFS P N + + AN I+
Sbjct: 355 DRWGNAVSVTYTINASYGSAASIDGAGFLLNNEMDDFSIKPGNPNLYGLVGGDANAIEAN 414
Query: 257 KRPLSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWSNNTLKESVDAARIHH 316
KRPLSSM P+I+ ++ V L VG+ GG++I T++ QVI + N + E+V A R H
Sbjct: 415 KRPLSSMSPTIVL-KNNKVFLVVGSPGGSRIITTVLQVISNVIDYNMNISEAVSAPRFHM 473
Query: 317 QLFPMKYGYE-YGVLRSIIEGMER 339
Q P + E +G+ + + + +
Sbjct: 474 QWLPDELRIEKFGMPADVKDNLTK 497
>d2nlza1 d.153.1.6 (A:3-539) Cephalosporin acylase {Bacillus
halodurans [TaxId: 86665]}
Length = 537
Score = 133 bits (335), Expect = 1e-35
Identities = 63/337 (18%), Positives = 114/337 (33%), Gaps = 16/337 (4%)
Query: 3 TNSLFTFSRALFINEKNLTKVENDTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQ 62
T+ ++ F + +V + + A T IAE G++ + G L
Sbjct: 173 TDDVYQPWFDTFAPKGRAPRV-GEVWRSQGHADTLRSIAESNGESFYRGELADQIHAFFD 231
Query: 63 EAGGIITEADMNNYNVEIEEPIVAKLKGNHTLWTSPLPGSGILLSFMLEILQYLIPAPSE 122
+ GG +T+ D+ Y E EPI +G + +W P G G++ L I++ +
Sbjct: 232 KHGGYLTKEDLACYRPEWVEPISIDYRG-YRVWEIPPNGQGLVALEALNIVKGFEFYHKD 290
Query: 123 LLWHQRIWVTGDTHPEAHNSYSSSINQVVQQLQSQDFIQEIRSQISDNRTWQDIEHYNAK 182
+ + + + Q E ++ Q +
Sbjct: 291 TVDTYHKQIEAMKLAFVDGMKYVTEPSDMSVSVEQLLSDEYATERRKEIGEQALTPEPG- 349
Query: 183 FVPSEDHGTANIVVYSEAGDAVVATSTVNLVFGSRFVSPSTGILVNDQMDDFSSPNITNY 242
GT + G+ V + + FGS V P TGI + ++ +FS +
Sbjct: 350 --TPPRGGTVYLATADGDGNMVSFIQSNYMGFGSGVVVPGTGIAMQNRGHNFSLDPNHDN 407
Query: 243 FHIPPSPANFIQPGKRPLSSMCPSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWSN 302
+PGKR ++ P +T D + G GG QV+M +
Sbjct: 408 AL---------KPGKRTYHTIIPGFLTKNDQPI-GPFGVMGGFMQPQGHMQVMMNTIDFG 457
Query: 303 NTLKESVDAARIHHQLFPMKYGYEYGVLRSIIEGMER 339
+ ++DA R + E I + + R
Sbjct: 458 LNPQAALDAPRWQWT-NGKQVQVEPTFPVDIAQALVR 493
>d2i3oa1 d.153.1.6 (A:1-516) Hypothetical protein Ta0994
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 516
Score = 95.8 bits (237), Expect = 2e-22
Identities = 55/327 (16%), Positives = 125/327 (38%), Gaps = 30/327 (9%)
Query: 24 ENDTYVWPALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIITEADMNNYNVEIEEP 83
+ P LA++F +++EEG + ++GSL + ++ G +++ D+ Y I +P
Sbjct: 179 AGEILKQPDLAESFRLMSEEGFRSFYDGSLADIIIAGLEGTGSPLSDRDLRVYRPLIGKP 238
Query: 84 IVAKLKGNHTLWTSPLPGSGILLSFMLEILQYLIPAPSELLWHQRIWVTGDTHPEAHNSY 143
+ L TSP ++ ++ + + + + +W +I +T EA++
Sbjct: 239 VFTDLDEFRIYETSPNSQGITVIEWIRGMESHGYDSRT--MWEAKIEDIFETMEEAYDKR 296
Query: 144 SSSINQVVQQLQSQDFIQEIRSQISDNRTWQDIEHYNAKFVPSEDHGTANIVVYSEAGDA 203
+ I+ + + + K ++ T + G +
Sbjct: 297 -------------RKITDPSYMNIAQHDSANGKKDGLPKRDHNDIGDTTYFSISDSEGRS 343
Query: 204 VVATSTVNLVFGSRFVSPSTGILVNDQMDDFSSPNITNYFHIPPSPANFIQPGKRPLSSM 263
V + + FGS V TG ++ ++ +YF + N + PGKR
Sbjct: 344 VSIIQSNYMGFGSGIVPKGTGFVLQNRG---------SYFTLQRDHPNALMPGKRT-FHT 393
Query: 264 CPSIITDQDGNVKLAVGAAGGTKITTSIAQVIMMNLWSNNTLKESVDAARIHHQLF---- 319
+ + +++ ++ ++G+ GG Q++M L N + +D R
Sbjct: 394 LAACMVEKEHDLYASLGSMGGDIQPQVQMQILMEILKDNTDPQAILDKPRWTEPYTIYEA 453
Query: 320 PMKYGYEY-GVLRSIIEGMERHEWFVR 345
P E + R++ + + + +R
Sbjct: 454 PGAVYVESEELYRNVSKQISGRKVVLR 480
>d1em8b_ c.126.1.1 (B:) DNA polymerase III psi subunit {Escherichia
coli [TaxId: 562]}
Length = 110
Score = 28.9 bits (65), Expect = 0.32
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 16/88 (18%)
Query: 104 ILLSFMLEILQYLIPAPSELLW-----HQRIWVTGDTHPEAHNSYSSSINQVVQQLQSQD 158
+L + + Q L P ++ H W G P + Q+ S
Sbjct: 31 VLRALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEG---------AQVASPA 81
Query: 159 FIQEIRSQISDNRT-WQDIEHYNAKFVP 185
++R+ + WQ I Y F P
Sbjct: 82 L-TDLRANPTARAALWQQICTYEHDFFP 108
>d1zara1 a.4.5.56 (A:2-90) Rio2 serine protein kinase N-terminal
domain {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 89
Score = 27.3 bits (61), Expect = 0.79
Identities = 2/18 (11%), Positives = 11/18 (61%)
Query: 325 YEYGVLRSIIEGMERHEW 342
+ + ++ +I + + +E+
Sbjct: 12 HSWRIMDAIFKNLWDYEY 29
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4
[TaxId: 9606]}
Length = 144
Score = 26.3 bits (58), Expect = 4.1
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 144 SSSINQVVQQLQSQDFIQEIRSQISDNRT 172
+ QV ++L S QE+R+ + +
Sbjct: 20 QTLSEQVQEELLSSQVTQELRALMDETMK 48
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 26.0 bits (56), Expect = 7.3
Identities = 3/13 (23%), Positives = 6/13 (46%)
Query: 233 DFSSPNITNYFHI 245
+ +S N H+
Sbjct: 12 EHTSVNPNKELHV 24
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 348
Score = 26.0 bits (56), Expect = 8.4
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 233 DFSSPNITNYFHI 245
+FSSPNI FH
Sbjct: 13 EFSSPNIAKPFHA 25
>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli
[TaxId: 562]}
Length = 195
Score = 25.5 bits (55), Expect = 8.9
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 70 EADMNNYNVEIEEPIVAKLKGNHTLWTSPLPGSGILLSFMLEILQYL 116
+ + + + L TS PG+ I F L+I+ L
Sbjct: 130 KDKIPAEQWLDKRVVW---DARVKLLTSQGPGTAI--DFGLKIIDLL 171
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 24.7 bits (54), Expect = 9.6
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 31 PALAKTFSIIAEEGGDALHNGSLTKAFVKDIQEAGGIITEADMNN 75
LAK + A N L K + + GG + ++ +
Sbjct: 87 KELAKELGYSGDMNDSASMNIWLHKQVMSKLVANGGKLP-PEIKH 130
>d1lbva_ e.7.1.1 (A:) Archaeal inositol
monophosphatase/fructose-1,6-bisphosphatase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 252
Score = 25.4 bits (54), Expect = 9.8
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Query: 61 IQEAGGIITEADMNNYNVEIEEPIVAKLKGNHTLWTSPLPGSGILLSFMLEILQ 114
++AGG +TE D + + K + + + + L +LE+++
Sbjct: 208 AEKAGGKVTELDGESLGNK---------KFDMQERLNIVAANEKLHPKLLELIK 252
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.395
Gapped
Lambda K H
0.267 0.0458 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,301,071
Number of extensions: 59137
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 16
Length of query: 350
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 264
Effective length of database: 1,226,816
Effective search space: 323879424
Effective search space used: 323879424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.9 bits)