Query psy11453
Match_columns 162
No_of_seqs 146 out of 1053
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 18:51:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0405 Ggt Gamma-glutamyltran 100.0 5.4E-48 1.2E-52 347.1 16.0 156 2-159 22-187 (539)
2 PLN02180 gamma-glutamyl transp 100.0 5.9E-48 1.3E-52 353.4 15.8 156 2-158 88-247 (639)
3 TIGR00066 g_glut_trans gamma-g 100.0 8.3E-48 1.8E-52 346.0 16.3 156 2-158 6-171 (516)
4 PLN02198 glutathione gamma-glu 100.0 1.1E-47 2.4E-52 348.8 16.8 155 2-158 39-197 (573)
5 PRK09615 ggt gamma-glutamyltra 100.0 1.7E-46 3.6E-51 341.5 16.3 155 2-158 55-219 (581)
6 PF01019 G_glu_transpept: Gamm 100.0 3E-45 6.5E-50 328.8 11.4 147 11-158 1-153 (510)
7 KOG2410|consensus 100.0 4.7E-45 1E-49 328.1 12.4 156 2-158 56-215 (579)
8 PLN02689 Bifunctional isoaspar 89.8 0.68 1.5E-05 40.2 5.2 40 4-43 32-71 (318)
9 cd04702 ASRGL1_like ASRGL1_lik 88.0 1.1 2.4E-05 37.9 5.1 40 4-43 26-65 (261)
10 PRK10226 isoaspartyl peptidase 87.9 1 2.3E-05 38.9 5.1 40 4-44 33-73 (313)
11 cd04701 Asparaginase_2 L-Aspar 84.9 2 4.4E-05 36.3 5.1 40 4-43 29-68 (260)
12 PF01112 Asparaginase_2: Aspar 84.8 1.9 4E-05 37.4 5.0 40 5-44 32-71 (319)
13 cd04513 Glycosylasparaginase G 84.4 1.4 3E-05 37.4 3.9 39 5-44 10-50 (263)
14 PLN02937 Putative isoaspartyl 83.4 2.3 5E-05 38.2 5.1 41 4-44 36-77 (414)
15 cd04514 Taspase1_like Taspase1 82.9 2.6 5.7E-05 36.3 5.1 41 4-44 25-65 (303)
16 cd04512 Ntn_Asparaginase_2_lik 79.2 4.1 8.9E-05 34.2 4.9 40 4-43 23-62 (248)
17 COG1446 Asparaginase [Amino ac 60.6 12 0.00027 32.4 3.8 29 4-32 28-56 (307)
18 COG0376 KatG Catalase (peroxid 56.1 24 0.00053 33.2 5.2 68 43-118 95-164 (730)
19 KOG2749|consensus 48.8 18 0.00039 32.4 3.0 61 84-160 141-221 (415)
20 cd04703 Asparaginase_2_like A 44.7 47 0.001 27.9 4.8 38 4-43 21-58 (246)
21 PF11848 DUF3368: Domain of un 44.5 74 0.0016 19.5 4.7 40 93-137 4-44 (48)
22 cd08180 PDD 1,3-propanediol de 42.9 61 0.0013 27.6 5.4 84 17-105 87-182 (332)
23 PF09691 PulS_OutS: Bacterial 32.8 1.7E+02 0.0036 21.6 5.6 47 94-140 29-78 (109)
24 PF15116 CD52: CAMPATH-1 antig 30.8 34 0.00073 21.3 1.4 15 35-49 18-32 (44)
25 PF00465 Fe-ADH: Iron-containi 28.5 1.3E+02 0.0027 25.9 5.1 84 17-105 87-194 (366)
26 PF15505 DUF4648: Domain of un 28.5 42 0.00091 26.4 1.9 26 80-105 131-156 (170)
27 cd08551 Fe-ADH iron-containing 27.8 1.5E+02 0.0031 25.5 5.4 84 17-105 89-195 (370)
28 COG2605 Predicted kinase relat 26.6 77 0.0017 27.7 3.3 37 20-56 267-303 (333)
29 cd08182 HEPD Hydroxyethylphosp 26.4 1.6E+02 0.0035 25.3 5.4 84 17-105 86-196 (367)
30 cd08192 Fe-ADH7 Iron-containin 26.2 1.8E+02 0.0038 25.1 5.6 84 17-105 90-200 (370)
31 PF10752 DUF2533: Protein of u 25.4 1.9E+02 0.0041 20.4 4.5 35 112-146 29-63 (84)
32 cd03206 GST_C_7 GST_C family, 24.8 1.4E+02 0.0031 20.0 4.0 43 106-149 57-100 (100)
33 cd08188 Fe-ADH4 Iron-containin 24.8 1.9E+02 0.004 25.1 5.5 84 17-105 94-200 (377)
34 cd08176 LPO Lactadehyde:propan 24.7 1.9E+02 0.0041 25.1 5.6 84 17-105 94-200 (377)
35 cd08189 Fe-ADH5 Iron-containin 23.9 2.1E+02 0.0046 24.7 5.7 84 17-105 92-199 (374)
36 KOG1592|consensus 22.8 1.4E+02 0.0031 26.1 4.2 39 5-43 29-67 (326)
37 smart00685 DM14 Repeats in fly 22.1 72 0.0016 21.0 1.8 19 112-130 34-52 (59)
38 cd08181 PPD-like 1,3-propanedi 20.1 2.5E+02 0.0055 24.1 5.4 84 17-105 92-197 (357)
No 1
>COG0405 Ggt Gamma-glutamyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-48 Score=347.07 Aligned_cols=156 Identities=35% Similarity=0.535 Sum_probs=144.3
Q ss_pred CchHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCCCCcCeeeEEEEcCCC-ceEEEcccccccccCCcchhcC-Cc
Q psy11453 2 KLNVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTG-KAYAINAREKAPAAATLGMFHG-NY 79 (162)
Q Consensus 2 ~~~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGGg~f~l~~~~~~~-~~~~id~~~~aP~~~~~~~~~~-~~ 79 (162)
.|++||++|.+||++||||||||||+++||+|||||+||||||+|||||+ +++ +++.|||||+||..++.+||.+ +.
T Consensus 22 ~~~lAs~aG~~iL~~GGNA~DAAVA~~~~L~VveP~ssGiGGggF~l~~~-~~~~~~~~ld~re~AP~~at~~~~~~~~g 100 (539)
T COG0405 22 SHPLASQAGLDILKKGGNAVDAAVAVAAALAVVEPQSSGIGGGGFMLIRD-KTGGKVTALDGRETAPAAATKEMYLDKDG 100 (539)
T ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccccCCCCCCeEEEEEe-CCCCceEEEeccccCcccCChhheeccCC
Confidence 58999999999999999999999999999999999999999999999999 566 8999999999999999995544 33
Q ss_pred ----cccccCCcccccccHHHHHHHHHHHcCCCCChHHhhHHHHHHhhCCCccCHHHHHHHHHHHHHhhcCCCC----CC
Q psy11453 80 ----KAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNINHHLAKNIRLYEDHIRRSPQL----TI 151 (162)
Q Consensus 80 ----~~~~~G~~sv~VPG~~~g~~~~~~r~gG~L~w~~ll~PAI~lA~~Gf~vs~~l~~~l~~~~~~l~~~p~~----~~ 151 (162)
..+.+|+++|+|||+++||+++|+|| |||||++||+|||+|||+||+|++.++..+....+.|.++|++ .+
T Consensus 101 ~~~~~~~~~G~~av~VPG~v~gl~~~~~~y-G~l~~~~ll~PAi~lA~~Gf~v~~~~~~~~~~~~~~l~~~~~~~~~fl~ 179 (539)
T COG0405 101 QVDPELPVRGGLAVGVPGTVAGLEEAHKRY-GTLPWADLLEPAIKLARDGFPVSPRLAALIASAAERLAKDPETAAIFLP 179 (539)
T ss_pred cccccccccCCcccccCchHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCccCHHHHHHHhhhhHHHhhChhhhhhhcC
Confidence 57889999999999999999999999 9999999999999999999999999999999999999999974 46
Q ss_pred CCCccccc
Q psy11453 152 GGMGVKEC 159 (162)
Q Consensus 152 ~G~~~~~~ 159 (162)
+|+++.+-
T Consensus 180 ~G~~~~~G 187 (539)
T COG0405 180 PGKPLKAG 187 (539)
T ss_pred CCCCCCCC
Confidence 78877653
No 2
>PLN02180 gamma-glutamyl transpeptidase 4
Probab=100.00 E-value=5.9e-48 Score=353.44 Aligned_cols=156 Identities=34% Similarity=0.588 Sum_probs=147.1
Q ss_pred CchHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCCCCcCeeeEEEEcCCCceEEEcccccccccCCcchhcCCccc
Q psy11453 2 KLNVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAATLGMFHGNYKA 81 (162)
Q Consensus 2 ~~~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGGg~f~l~~~~~~~~~~~id~~~~aP~~~~~~~~~~~~~~ 81 (162)
++++||++|++||++||||||||||+++|++||+||+||||||+|||||+++++++++|||+++||..++.+||......
T Consensus 88 ~~plAs~aG~~IL~~GGNAVDAAVAaa~aL~VveP~~sGiGGggf~lv~~~~~~~~~~id~re~AP~~a~~d~~~~~~~~ 167 (639)
T PLN02180 88 DDARCSEIGASVLRRGGHAVDAAVAITLCIGVVNPMSSGIGGGSFLIVSSQKDSKAEAFDMRETAPLAASKDMYKNDASA 167 (639)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccCCCCCCeEEEEEECCCCcEEEEeCcccccccCCHHHHhcCCCC
Confidence 68999999999999999999999999999999999999999999999999888999999999999999999999765556
Q ss_pred cccCCcccccccHHHHHHHHHHHcCCCCChHHhhHHHHHHhhCCCccCHHHHHHHHHHHHHhhcCCC----CCCCCCccc
Q psy11453 82 AQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNINHHLAKNIRLYEDHIRRSPQ----LTIGGMGVK 157 (162)
Q Consensus 82 ~~~G~~sv~VPG~~~g~~~~~~r~gG~L~w~~ll~PAI~lA~~Gf~vs~~l~~~l~~~~~~l~~~p~----~~~~G~~~~ 157 (162)
+..|+.||+|||+++||+++|+|| |||||++||+|||+|||+||+|++.++..|+...+.|.++|+ |.++|+++.
T Consensus 168 ~~~G~~svaVPG~v~Gl~~ah~ry-GkLpwa~Ll~PAI~lAr~GfpVs~~la~~l~~~~~~l~~~p~~~~~f~~~G~~~~ 246 (639)
T PLN02180 168 KSLGALSMGVPGEIAGLYEAWKRY-GRLPWKPLFEPAIELARDGFVVHPYLGKAISSHAAMILKDPGLRSVFSRNGQVLK 246 (639)
T ss_pred CCCCcccccccchHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCcccCHHHHHHHHHHHHHHhcChhHHHHhCcCCccCC
Confidence 788999999999999999999999 999999999999999999999999999999999999998887 558888876
Q ss_pred c
Q psy11453 158 E 158 (162)
Q Consensus 158 ~ 158 (162)
+
T Consensus 247 ~ 247 (639)
T PLN02180 247 P 247 (639)
T ss_pred C
Confidence 4
No 3
>TIGR00066 g_glut_trans gamma-glutamyltranspeptidase. Also called gamma-glutamyltranspeptidase (ggt). Some members of this family have antibiotic synthesis or resistance activities. In the case of a cephalosporin acylase from Pseudomonas sp., the enzyme was shown to retain some gamma-glutamyltranspeptidase activity. Other, more distantly related proteins have ggt-related activities and score below the trusted cutoff.
Probab=100.00 E-value=8.3e-48 Score=346.03 Aligned_cols=156 Identities=37% Similarity=0.528 Sum_probs=143.4
Q ss_pred CchHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCCCCcCeeeEEEEcCCCceEEEcccccccccCCcchhcCC--c
Q psy11453 2 KLNVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAATLGMFHGN--Y 79 (162)
Q Consensus 2 ~~~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGGg~f~l~~~~~~~~~~~id~~~~aP~~~~~~~~~~~--~ 79 (162)
++++|+++|++||++||||||||||++||++||+||+||||||+|||||+++++++++|||+++||..++.++|.+. .
T Consensus 6 ~~p~as~aG~~vL~~GGNAvDAAIAa~~~l~VveP~~sGiGGgg~~lv~~~~~~~~~~id~~~~aP~~a~~d~~~~~~~~ 85 (516)
T TIGR00066 6 LHALASEIGEDILKEGGNAFDAAVAVGLALAVVEPFMTGLGGGGFMLISGKKTKDTTAIDFRERAPAKATRDMFLDKSGN 85 (516)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccccCCCCCceEEEEEECCCCeEEEEeCcccchhhCCHHHHhhcCCC
Confidence 68999999999999999999999999999999999999999999999999888999999999999999999999632 1
Q ss_pred ccc---ccCCcccccccHHHHHHHHHHHcCCCCChHHhhHHHHHHhhCCCccCHHHHHHHHHHHHHhhcCC-C----CCC
Q psy11453 80 KAA---QTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNINHHLAKNIRLYEDHIRRSP-Q----LTI 151 (162)
Q Consensus 80 ~~~---~~G~~sv~VPG~~~g~~~~~~r~gG~L~w~~ll~PAI~lA~~Gf~vs~~l~~~l~~~~~~l~~~p-~----~~~ 151 (162)
..+ ..|+.||+|||+++||+++|+|| |||||++||+|||+|||+||+|++.+++.|+...+.|.++| + |.+
T Consensus 86 ~~~~~~~~G~~sv~VPG~v~g~~~~~~~~-G~L~w~~ll~PAI~lA~~Gf~v~~~l~~~~~~~~~~l~~~~~~~~~~f~~ 164 (516)
T TIGR00066 86 PLPGKSLTGGLAIGVPGTVAGLEAALKKY-GTLPLKDLIEPAIKLARNGFPINEALADTLELYEEVLLTTKEDSKDIFNP 164 (516)
T ss_pred cCCccccCCcccccccchHHHHHHHHHHH-ccCCHHHHHHHHHHHHHcCccCCHHHHHHHHHHHHHHhhCcHHHHHHhcc
Confidence 222 35899999999999999999999 99999999999999999999999999999999999898887 3 558
Q ss_pred CCCcccc
Q psy11453 152 GGMGVKE 158 (162)
Q Consensus 152 ~G~~~~~ 158 (162)
+|+++.+
T Consensus 165 ~g~~~~~ 171 (516)
T TIGR00066 165 TGKPLKE 171 (516)
T ss_pred CCCcCCC
Confidence 8888764
No 4
>PLN02198 glutathione gamma-glutamylcysteinyltransferase
Probab=100.00 E-value=1.1e-47 Score=348.76 Aligned_cols=155 Identities=32% Similarity=0.529 Sum_probs=145.2
Q ss_pred CchHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCCCCcCeeeEEEEcCCCceEEEcccccccccCCcchhcCCccc
Q psy11453 2 KLNVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAATLGMFHGNYKA 81 (162)
Q Consensus 2 ~~~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGGg~f~l~~~~~~~~~~~id~~~~aP~~~~~~~~~~~~~~ 81 (162)
++++||++|++||++||||||||||++||++||+||+||||||+|||||++ ++++++||++++||..++.++|.+....
T Consensus 39 ~~p~as~aG~~iL~~GGNAvDAAVAa~~~l~VveP~~sGiGGggf~lv~~~-~~~~~~id~~~~AP~~a~~d~~~~~~~~ 117 (573)
T PLN02198 39 DDGRCSVIGMNVLREGGNAIDASVAAALCLGVVSPASSGIGGGAFTLIKLA-NGEEIAYDSRETAPLSATENMYGGNVEL 117 (573)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccccCCCCCceEEEEEEC-CCcEEEEeCcccccccCCHhHhcCCCcC
Confidence 689999999999999999999999999999999999999999999999985 5788999999999999999999765556
Q ss_pred cccCCcccccccHHHHHHHHHHHcCCCCChHHhhHHHHHHhhCCCccCHHHHHHHHHHHHHhhcCCC----CCCCCCccc
Q psy11453 82 AQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNINHHLAKNIRLYEDHIRRSPQ----LTIGGMGVK 157 (162)
Q Consensus 82 ~~~G~~sv~VPG~~~g~~~~~~r~gG~L~w~~ll~PAI~lA~~Gf~vs~~l~~~l~~~~~~l~~~p~----~~~~G~~~~ 157 (162)
+..|+.+|+|||+++||+++|+|| |||||++||+|||+|||+||+|++.+++.|+..++.|.++|+ |.+||+++.
T Consensus 118 ~~~G~~sv~VPG~v~Gl~~~~~~~-G~L~w~~ll~PAI~lAr~Gf~v~~~la~~l~~~~~~l~~~p~~~~~f~~~G~~~~ 196 (573)
T PLN02198 118 KKKGALSVGVPGEVAGLFTAWKQH-GKLPWKRLVRPAEKLAAEGFKISKYLYMQMNATRSDILADKGLSDLFVSNGELKK 196 (573)
T ss_pred CCCCccccccchHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHhcChhHHHHcCcCCCcCC
Confidence 788999999999999999999999 999999999999999999999999999999999999998886 457888776
Q ss_pred c
Q psy11453 158 E 158 (162)
Q Consensus 158 ~ 158 (162)
+
T Consensus 197 ~ 197 (573)
T PLN02198 197 P 197 (573)
T ss_pred C
Confidence 5
No 5
>PRK09615 ggt gamma-glutamyltranspeptidase; Reviewed
Probab=100.00 E-value=1.7e-46 Score=341.52 Aligned_cols=155 Identities=31% Similarity=0.464 Sum_probs=141.0
Q ss_pred CchHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCCCCcCeeeEEEEcCCCceEEEcccccccccCCcchhcCC--c
Q psy11453 2 KLNVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAATLGMFHGN--Y 79 (162)
Q Consensus 2 ~~~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGGg~f~l~~~~~~~~~~~id~~~~aP~~~~~~~~~~~--~ 79 (162)
++++||++|++||++||||||||||+++||+||+||+||||||+|||||++ ++++++|||+++||..++.++|... .
T Consensus 55 ~~plAs~aG~~VL~~GGNAvDAAVAaa~~l~VveP~~sGiGGggf~lv~~~-~~~~~~id~~~~AP~~a~~d~~~~~~g~ 133 (581)
T PRK09615 55 VDATATQVGVDILKQGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLLRTK-NGNTTAIDFREMAPAKATRDMFLDDQGN 133 (581)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCcccCEEEEEEEC-CCcEEEEEccccCcccCCHhhhhcccCC
Confidence 689999999999999999999999999999999999999999999999996 5788999999999999999999532 1
Q ss_pred c---ccccCCcccccccHHHHHHHHHHHcCCCCChHHhhHHHHHHhhCCCccCHHHHHHHHHH-HHHhhcCCC----CCC
Q psy11453 80 K---AAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNINHHLAKNIRLY-EDHIRRSPQ----LTI 151 (162)
Q Consensus 80 ~---~~~~G~~sv~VPG~~~g~~~~~~r~gG~L~w~~ll~PAI~lA~~Gf~vs~~l~~~l~~~-~~~l~~~p~----~~~ 151 (162)
. .+..|++||+|||+++||+++|+|| |||||++||+|||+|||+||+|++.+++.|+.. .+.|.++|+ |.+
T Consensus 134 ~~p~~~~~G~~svaVPG~v~Gl~~~~~r~-G~L~w~~ll~PAI~lA~~Gf~v~~~la~~l~~~~~~~l~~~~~~~~~f~~ 212 (581)
T PRK09615 134 PDSKKSLTSHLASGTPGTVAGFSLALDKY-GTMPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWK 212 (581)
T ss_pred cCCcccccCCceeecCchHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCccCCHHHHHHHHHhHHHHhhcChhHHHHhcc
Confidence 1 2345999999999999999999999 999999999999999999999999999999987 667888876 558
Q ss_pred CCCcccc
Q psy11453 152 GGMGVKE 158 (162)
Q Consensus 152 ~G~~~~~ 158 (162)
||+++.+
T Consensus 213 ~G~~~~~ 219 (581)
T PRK09615 213 EGEPLKK 219 (581)
T ss_pred CCCcCCC
Confidence 8988765
No 6
>PF01019 G_glu_transpept: Gamma-glutamyltranspeptidase; InterPro: IPR000101 Gamma-glutamyltranspeptidase (2.3.2.2 from EC) (GGT) [] catalyzes the transfer of the gamma-glutamyl moiety of glutathione to an acceptor that may be an amino acid, a peptide or water (forming glutamate). GGT plays a key role in the gamma-glutamyl cycle, a pathway for the synthesis and degradation of glutathione and drug and xenobiotic detoxification []. In prokaryotes and eukaryotes, it is an enzyme that consists of two polypeptide chains, a heavy and a light subunit, processed from a single chain precursor by an autocatalytic cleavage. The active site of GGT is known to be located in the light subunit. The sequences of mammalian and bacterial GGT show a number of regions of high similarity []. Pseudomonas cephalosporin acylases (3.5.1 from EC) that convert 7-beta-(4-carboxybutanamido)-cephalosporanic acid (GL-7ACA) into 7-aminocephalosporanic acid (7ACA) and glutaric acid are evolutionary related to GGT and also show some GGT activity []. Like GGT, these GL-7ACA acylases, are also composed of two subunits. As an autocatalytic peptidase GGT belongs to MEROPS peptidase family T3 (gamma-glutamyltransferase family, clan PB(T)). The active site residue for members of this family and family T1 is C-terminal to the autolytic cleavage site. The type example is gamma-glutamyltransferase 1 from Escherichia coli. ; GO: 0003840 gamma-glutamyltransferase activity; PDB: 2DBX_A 2Z8K_D 2Z8I_B 2DBU_D 2E0X_B 2DBW_B 2E0W_B 2DG5_A 2E0Y_C 2Z8J_C ....
Probab=100.00 E-value=3e-45 Score=328.80 Aligned_cols=147 Identities=43% Similarity=0.697 Sum_probs=121.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhccCCCCCCCcCeeeEEEEcCCCceEEEcccccccccCCcchh--cCCccccccCCcc
Q psy11453 11 RNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAATLGMF--HGNYKAAQTGALA 88 (162)
Q Consensus 11 ~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGGg~f~l~~~~~~~~~~~id~~~~aP~~~~~~~~--~~~~~~~~~G~~s 88 (162)
++||++||||||||||+++|++||+||+||||||+|||||+++++++++|||++++|..++.++| ......+..|+.+
T Consensus 1 m~vL~~GGNAvDAAvAaa~~l~Vv~P~~~giGG~~~~lv~~~~~~~~~~id~~~~aP~~~~~~~~~~~~~~~~~~~g~~s 80 (510)
T PF01019_consen 1 MDVLRKGGNAVDAAVAAALALGVVEPHSSGIGGGGFMLVYDAKTGKVHAIDGRGRAPAAATPEMFDFKGNPKIPERGGLS 80 (510)
T ss_dssp HHHHHTT--HHHHHHHHHHHHHHHSTTT-STTSEEEEEEEETTSEEEEEEEE--BB-TT--TTTTTSCBBSCHHTSSGGG
T ss_pred ChHHHhCCCHHHHHHHHHHHHhhcCcccCCcccCcEEEEEecCCcceeEecCcchhhhhCChhhhhccCCchhcccCccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999 3445678899999
Q ss_pred cccccHHHHHHHHHHHcCCCCChHHhhHHHHHHhhCCCccCHHHHHHHHHHHHHhhcCCC----CCCCCCcccc
Q psy11453 89 AAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNINHHLAKNIRLYEDHIRRSPQ----LTIGGMGVKE 158 (162)
Q Consensus 89 v~VPG~~~g~~~~~~r~gG~L~w~~ll~PAI~lA~~Gf~vs~~l~~~l~~~~~~l~~~p~----~~~~G~~~~~ 158 (162)
|+|||+++||+++|+|| |+|||++||+|||+|||+||+|++.+++.|+...+.|.++|+ |.+||+++.+
T Consensus 81 v~vPG~~~g~~~~h~~~-G~lpw~~l~~PAI~lA~~Gf~v~~~la~~l~~~~~~l~~~~~~~~~f~~~G~~~~~ 153 (510)
T PF01019_consen 81 VAVPGAVAGLEEAHERY-GTLPWADLLAPAIRLARDGFPVSPSLARALARNADKLRRDPGSRALFLPDGRPPRE 153 (510)
T ss_dssp -BB--HHHHHHHHHHHH--SS-HHHHHHHHHHHHHH-EE--HHHHHHHHHHHHHHTTSHHHHHHHSTTSSE--T
T ss_pred cCCCcHHHHHHHHHHHh-cchhHHHHHHHHHHHhcCCeEechhHHhHHHhHHHHHhhhhhHHHHhccCCCcCCC
Confidence 99999999999999999 999999999999999999999999999999999999999986 4578888765
No 7
>KOG2410|consensus
Probab=100.00 E-value=4.7e-45 Score=328.06 Aligned_cols=156 Identities=46% Similarity=0.707 Sum_probs=147.2
Q ss_pred CchHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCCCCcCeeeEEEEcCCCceEEEcccccccccCCcchhcCCccc
Q psy11453 2 KLNVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAATLGMFHGNYKA 81 (162)
Q Consensus 2 ~~~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGGg~f~l~~~~~~~~~~~id~~~~aP~~~~~~~~~~~~~~ 81 (162)
|+..||++|++||++||||||||||++||++|++||++|||||+||+||++++++.++||+||+||..++.+||.++...
T Consensus 56 d~~~CS~IG~~iL~~GGnAVDAAIAa~lC~Gvvnp~SsGIGGG~~m~i~~~~~~~~~~idaREtAP~aa~~~mf~~~~~~ 135 (579)
T KOG2410|consen 56 DSARCSEIGRSILRKGGNAVDAAIAALLCLGVVNPHSSGIGGGGFMTIYNKNTGKAEVIDARETAPAAATEDMFVNNPEL 135 (579)
T ss_pred CchHHHHHHHHHHHhcccHHHHHHHHHHhcccccccccccccceEEEEecCCCCceeEeeHHhhhhhhhcHHHhcCCccc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred cccCCcccccccHHHHHHHHHHHcCCCCChHHhhHHHHHHhhCCCccCHHHHHHHHHHHHHhhcCCCC----CCCCCccc
Q psy11453 82 AQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNINHHLAKNIRLYEDHIRRSPQL----TIGGMGVK 157 (162)
Q Consensus 82 ~~~G~~sv~VPG~~~g~~~~~~r~gG~L~w~~ll~PAI~lA~~Gf~vs~~l~~~l~~~~~~l~~~p~~----~~~G~~~~ 157 (162)
...|++|++|||++.|++++|++| |+|||++|++|+|+||++||+|++.|++.++.....++.+|.. .++|+++.
T Consensus 136 ~~~G~lsigVPGEi~Gl~~A~k~~-G~lpW~~L~~P~i~La~~Gf~vs~~L~~~l~~~~~~~~~~~~~~~l~~~~g~~~~ 214 (579)
T KOG2410|consen 136 SKVGALSIGVPGELAGLYEAHQKY-GRLPWKQLFQPTIKLAREGFPVSKYLARALRRKEPYILLDPGLWEIFARTGKVLK 214 (579)
T ss_pred ceeccccccChHHHHHHHHHHHHh-CCCCHHHhhhhHHHHhhcCccccHHHHHHHhccccchhhcccchhhcccCCccCc
Confidence 789999999999999999999999 9999999999999999999999999999999988877777653 46777766
Q ss_pred c
Q psy11453 158 E 158 (162)
Q Consensus 158 ~ 158 (162)
+
T Consensus 215 ~ 215 (579)
T KOG2410|consen 215 E 215 (579)
T ss_pred c
Confidence 5
No 8
>PLN02689 Bifunctional isoaspartyl peptidase/L-asparaginase
Probab=89.77 E-value=0.68 Score=40.18 Aligned_cols=40 Identities=18% Similarity=-0.031 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCCCCc
Q psy11453 4 NVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGG 43 (162)
Q Consensus 4 ~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGG 43 (162)
..|.++|.++|++||+|.||.+++.-.|=--.-+..|-|+
T Consensus 32 ~~al~~g~~~L~~g~saldAV~~av~~lEd~p~fnAG~Gs 71 (318)
T PLN02689 32 RRCLDLGIAALRSSLPALDVVELVVRELENDPLFNAGRGS 71 (318)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCccCc
Confidence 4678899999999999999999987666543334444444
No 9
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=87.99 E-value=1.1 Score=37.89 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCCCCc
Q psy11453 4 NVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGG 43 (162)
Q Consensus 4 ~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGG 43 (162)
..|.+.|.++|++||+|.||.+++.-.+=--.-+..|.|+
T Consensus 26 ~~a~~~~~~~L~~g~saldAv~~av~~lEd~p~fnaG~Gs 65 (261)
T cd04702 26 KAAAEAGYKVLEQGGSALDAVEAAVRVMEDDPIFNAGYGS 65 (261)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCccCc
Confidence 4578899999999999999999986665543334555554
No 10
>PRK10226 isoaspartyl peptidase; Provisional
Probab=87.89 E-value=1 Score=38.94 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC-CCCCCCcC
Q psy11453 4 NVGLSTCRNILRKGGNAVDAAITALLCDGLSCP-QSMGLGGG 44 (162)
Q Consensus 4 ~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P-~~~giGGg 44 (162)
..|.++|.++|++||+|.||.+++.-.|=- .| +.+|.|+-
T Consensus 33 ~~al~~g~~~L~~g~saldAV~~av~~lEd-~p~fNaG~Gs~ 73 (313)
T PRK10226 33 SAIVETGQKMLEAGESALDVVTEAVRLLEE-CPLFNAGIGAV 73 (313)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCcccCCC
Confidence 457889999999999999999998777665 44 55555543
No 11
>cd04701 Asparaginase_2 L-Asparaginase type 2. L-Asparaginase hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzyme undergoes an autoproteolytic cleavage into alpha and beta subunits to expose a threonine residue which becomes the N-terminal residue of the beta subunit. The threonine residue plays a central role in hydrolase activity. Some asparaginases can also hydrolyze L-glutamine and are termed glutaminase-asparaginase. This is a member of the Ntn-hydrolase superfamily.
Probab=84.89 E-value=2 Score=36.29 Aligned_cols=40 Identities=28% Similarity=0.310 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCCCCc
Q psy11453 4 NVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGG 43 (162)
Q Consensus 4 ~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGG 43 (162)
..|.+.|.++|++|++|.||.+++.-+|=--.-+.+|-|+
T Consensus 29 ~~al~~~~~~L~~g~saldAv~~av~~lEd~p~fNaG~Gs 68 (260)
T cd04701 29 RAALEAGHAVLAAGGSALDAVVAAVRLLEDSPLFNAGKGA 68 (260)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCccCc
Confidence 3567889999999999999999976666543334556554
No 12
>PF01112 Asparaginase_2: Asparaginase; InterPro: IPR000246 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Threonine peptidases are characterised by a threonine nucleophile at the N terminus of the mature enzyme. The threonine peptidases belong to clan PB or are unassigned, clan T-. The type example for this clan is the archaean proteasome beta component of Thermoplasma acidophilum. This group of sequences have a signature that places them in MEROPS peptidase family T2 (clan PB(T)). The glycosylasparaginases (3.5.1.26 from EC) are threonine peptidases. Also in this family is L-asparaginase (3.5.1.1 from EC), which catalyses the following reaction: L-asparagine + H2O = L-aspartate + NH3 Glycosylasparaginase catalyses: N4-(beta-N-acetyl-D-glucosaminyl)-L-asparagine + H(2)O = N-acetyl-beta-glucosaminylamine + L-aspartate cleaving the GlcNAc-Asn bond that links oligosaccharides to asparagine in N-linked glycoproteins. The enzyme is composed of two non-identical alpha/beta subunits joined by strong non-covalent forces and has one glycosylation site located in the alpha subunit [] and plays a major role in the degradation of glycoproteins.; GO: 0016787 hydrolase activity; PDB: 1APY_D 1APZ_C 2GEZ_E 2GL9_B 2GAC_D 2GAW_C 1AYY_A 1P4V_C 9GAF_A 1P4K_A ....
Probab=84.81 E-value=1.9 Score=37.39 Aligned_cols=40 Identities=28% Similarity=0.269 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCCCCcC
Q psy11453 5 VGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGGG 44 (162)
Q Consensus 5 ~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGGg 44 (162)
.|.++|.++|++|++|.||.+++.-.|==-.-+.+|.|+-
T Consensus 32 ~a~~~~~~~L~~g~~aldAV~~Av~~LEd~p~fNaG~Gs~ 71 (319)
T PF01112_consen 32 DALEAGYEVLKKGGSALDAVEAAVRVLEDDPLFNAGYGSV 71 (319)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHSTTSSSSTTSS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCccCCCC
Confidence 5789999999999999999998776665444456666654
No 13
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=84.41 E-value=1.4 Score=37.35 Aligned_cols=39 Identities=28% Similarity=0.372 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC--CCCCCcC
Q psy11453 5 VGLSTCRNILRKGGNAVDAAITALLCDGLSCPQ--SMGLGGG 44 (162)
Q Consensus 5 ~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~--~~giGGg 44 (162)
.|.++|.++|++||+|.||.+++.-.|=- .|. ..|.|+-
T Consensus 10 ~a~~~g~~~L~~G~salDAv~~av~~lEd-~p~f~naG~Gs~ 50 (263)
T cd04513 10 NATDAAWEVLKAGGSALDAVEEGCSLCED-DPCDKSVGYGGS 50 (263)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhh-CcCcCCcccCcC
Confidence 57889999999999999999998776653 454 3466553
No 14
>PLN02937 Putative isoaspartyl peptidase/L-asparaginase
Probab=83.37 E-value=2.3 Score=38.23 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhccCCCCCCCcC
Q psy11453 4 NVGLSTCRNILRKG-GNAVDAAITALLCDGLSCPQSMGLGGG 44 (162)
Q Consensus 4 ~~as~aG~~iL~~G-GNAvDAAvA~~~~l~Vv~P~~~giGGg 44 (162)
..|.++|.++|++| |+|+||.+++.-.|=--.-+..|.|+-
T Consensus 36 ~~A~~aa~~~L~~g~gsalDAV~aAv~~LEd~p~fNAG~Gs~ 77 (414)
T PLN02937 36 RRACLAAAAILRQGSGGCIDAVSAAIQVLEDDPSTNAGRGSN 77 (414)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCCccCcC
Confidence 35778899999999 999999998766554322245566554
No 15
>cd04514 Taspase1_like Taspase1_like domains; Taspase1 catalyzes the cleavage of the mix lineage leukemia (MLL) nuclear protein and transcription factor TFIIA. Taspase1 is a threonine aspartase, a member of the Ntn hydrolase superfamily and the type 2 asparaginase family. A threonine residue acts as the active site nucleophile in both endopeptidease and protease activities to cleave polypeptide substrates after an aspartate residue. The Taspase1 proenzyme undergoes autoproteolysis into alpha and beta subunits. The N-terminal residue of the beta subunit is a threonine which is the active catalytic residue. The active enzyme is a heterotetramer.
Probab=82.93 E-value=2.6 Score=36.32 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCCCCcC
Q psy11453 4 NVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGGG 44 (162)
Q Consensus 4 ~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGGg 44 (162)
..|.+.|.++|++|++|.||.+++.-+|=--.-..+|.|+-
T Consensus 25 ~~al~~~~~~L~~g~saldAv~~av~~lEd~p~fNaG~Gs~ 65 (303)
T cd04514 25 KRACQKAIELLRAGGSALDAVVAAIQVLEDSPLTNAGYGSN 65 (303)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCccCcC
Confidence 45788999999999999999998877776544456666653
No 16
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=79.16 E-value=4.1 Score=34.21 Aligned_cols=40 Identities=28% Similarity=0.250 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCCCCc
Q psy11453 4 NVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGG 43 (162)
Q Consensus 4 ~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGG 43 (162)
..|.+.+.++|++|++|.||.+++.-.+=-..-..+|-|+
T Consensus 23 ~~a~~~~~~~l~~g~saldAv~~av~~lEd~p~~NaG~Gs 62 (248)
T cd04512 23 RRAAQEGWKVLQKGGSALDAVEAAVRLLEDSPLFNAGYGS 62 (248)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCccCc
Confidence 3577889999999999999999987666543335556554
No 17
>COG1446 Asparaginase [Amino acid transport and metabolism]
Probab=60.58 E-value=12 Score=32.38 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy11453 4 NVGLSTCRNILRKGGNAVDAAITALLCDG 32 (162)
Q Consensus 4 ~~as~aG~~iL~~GGNAvDAAvA~~~~l~ 32 (162)
..+.++|..+|..||+|.||++++.-.|=
T Consensus 28 ~~a~~ag~~~l~~g~sALDAVv~Av~~mE 56 (307)
T COG1446 28 SAAVEAGYQLLSAGGSALDAVVEAVRVLE 56 (307)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 34667888999999999999999866555
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=56.07 E-value=24 Score=33.20 Aligned_cols=68 Identities=16% Similarity=0.288 Sum_probs=41.1
Q ss_pred cCee-eEEEEcCCCceEEEcccccccccCCcchhcCCccccccCCc-ccccccHHHHHHHHHHHcCCCCChHHhhHHH
Q psy11453 43 GGFL-MTLYNKTTGKAYAINAREKAPAAATLGMFHGNYKAAQTGAL-AAAIPAEVLGYWTVYHRFGGGVPWRDLFEEP 118 (162)
Q Consensus 43 Gg~f-~l~~~~~~~~~~~id~~~~aP~~~~~~~~~~~~~~~~~G~~-sv~VPG~~~g~~~~~~r~gG~L~w~~ll~PA 118 (162)
|+.| =|-|.. .|.....|+||-+-..--+ |. |..+.. -+..=-.-+-||-++++||-++||.+|+-=+
T Consensus 95 GplfIRmAWHs-AGTYRi~DGRGGa~~G~qR--Fa-----PlnSWPDN~nLDKarRLLWPIKkKYG~kiSWaDL~iLa 164 (730)
T COG0376 95 GPLFIRMAWHS-AGTYRIGDGRGGAGGGQQR--FA-----PLNSWPDNANLDKARRLLWPIKKKYGRKISWADLIILA 164 (730)
T ss_pred ccceeeeeecc-cCceecccCCCCCCCCcee--cc-----cccCCCcccchHHHHHHhhhHhHhhcccccHhHhhhhh
Confidence 4444 344665 4888899999987654211 21 111111 1223334677899999993389999998543
No 19
>KOG2749|consensus
Probab=48.85 E-value=18 Score=32.42 Aligned_cols=61 Identities=16% Similarity=0.429 Sum_probs=42.5
Q ss_pred cCCcccccccHHHHHHHHHHHcCCCCChHHhhHHHHHHhhCCCccCH---------------HHHHHHH-----HHHHHh
Q psy11453 84 TGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNINH---------------HLAKNIR-----LYEDHI 143 (162)
Q Consensus 84 ~G~~sv~VPG~~~g~~~~~~r~gG~L~w~~ll~PAI~lA~~Gf~vs~---------------~l~~~l~-----~~~~~l 143 (162)
.|..|+++||++++ .+-+.++.+ .+||+.+. .|.+.+- ....++
T Consensus 141 vgQ~sitiPGsiaA-----------~~i~~~~D~-----~eGf~l~~pLV~~FG~~sp~~N~~LY~~~~s~La~v~~~~~ 204 (415)
T KOG2749|consen 141 VGQGSITIPGSIAA-----------IPIEMPLDV-----IEGFSLTAPLVYNFGLTSPSTNLELYKALVSELAEVLKQRL 204 (415)
T ss_pred CCCCceecccchhh-----------eecccccch-----hhCcccCCceeeeccCCCCCcCHHHHHHHHHHHHHHHHHHh
Confidence 47789999998865 355566655 57888763 2333322 224567
Q ss_pred hcCCCCCCCCCcccccc
Q psy11453 144 RRSPQLTIGGMGVKECA 160 (162)
Q Consensus 144 ~~~p~~~~~G~~~~~~~ 160 (162)
..+|+.+..|..++.|-
T Consensus 205 ~~n~~ar~sG~iInT~g 221 (415)
T KOG2749|consen 205 SLNPEARVSGCIINTCG 221 (415)
T ss_pred ccCchhcccceEEeccc
Confidence 88999999999999885
No 20
>cd04703 Asparaginase_2_like A subfamily of the L-Asparaginase type 2-like enzymes. The wider family, a member of the Ntn-hydrolase superfamily, includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=44.66 E-value=47 Score=27.90 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCCCCc
Q psy11453 4 NVGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGG 43 (162)
Q Consensus 4 ~~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGG 43 (162)
..|.+.|.++|++ +|.||.+++.-++=--.-+.+|-|+
T Consensus 21 ~~a~~~a~~~L~~--saldAv~~av~~lEd~~~~NaG~Gs 58 (246)
T cd04703 21 QGAAEAATAALSN--DALDAVTAAVRALESDPAFNAGTGA 58 (246)
T ss_pred HHHHHHHHHHHhh--cHHHHHHHHHHHHhcCCCCCCccCc
Confidence 3577889999999 9999999986666543334445444
No 21
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.55 E-value=74 Score=19.54 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHcCCCCChHHhhHHHH-HHhhCCCccCHHHHHHHH
Q psy11453 93 AEVLGYWTVYHRFGGGVPWRDLFEEPI-ALALNGVNINHHLAKNIR 137 (162)
Q Consensus 93 G~~~g~~~~~~r~gG~L~w~~ll~PAI-~lA~~Gf~vs~~l~~~l~ 137 (162)
|++-=+..+.++ |-++ + +.|++ ++-+.||.+|+.+.+.+-
T Consensus 4 GTlGiL~~Ak~~--GlI~--~-~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 4 GTLGILLLAKRR--GLIS--E-VKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred ehHHHHHHHHHc--CChh--h-HHHHHHHHHHcCcccCHHHHHHHH
Confidence 555555555555 8888 3 34444 567889999999877654
No 22
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=42.86 E-value=61 Score=27.56 Aligned_cols=84 Identities=21% Similarity=0.296 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHHH----------hccCCCCCCCcCe--eeEEEEcCCCceEEEcccccccccCCcchhcCCcccccc
Q psy11453 17 GGNAVDAAITALLCDG----------LSCPQSMGLGGGF--LMTLYNKTTGKAYAINAREKAPAAATLGMFHGNYKAAQT 84 (162)
Q Consensus 17 GGNAvDAAvA~~~~l~----------Vv~P~~~giGGg~--f~l~~~~~~~~~~~id~~~~aP~~~~~~~~~~~~~~~~~ 84 (162)
||.++|+|=++++... +.-|..+|-|.-. +.++|+.+++.-..+......|..+=.|. ..-..
T Consensus 87 GGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTtagtgse~t~~avi~~~~~~~k~~~~~~~~~p~~~i~Dp-----~l~~~ 161 (332)
T cd08180 87 GGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTTSGTGSEVTSFAVITDPETGVKYPLVDDELLPDIAILDP-----ELVKT 161 (332)
T ss_pred CchHHHHHHHHHHHHhCCCCCCCCCEEEeCCCCcchHhhCCeEEEEecCCCeeEEeeCCCccCCEEEECc-----hhhcc
Confidence 7899999966655433 5567666666543 77888876665455544444454322211 11112
Q ss_pred CCcccccccHHHHHHHHHHHc
Q psy11453 85 GALAAAIPAEVLGYWTVYHRF 105 (162)
Q Consensus 85 G~~sv~VPG~~~g~~~~~~r~ 105 (162)
=+..+..-+.++++..+.|.|
T Consensus 162 ~P~~~~~~~~~Dal~h~~E~~ 182 (332)
T cd08180 162 VPPAVTADTGMDVLTHALEAY 182 (332)
T ss_pred CCHHHHHHhHHHHHHHHHHHH
Confidence 234455667778888887766
No 23
>PF09691 PulS_OutS: Bacterial chaperone lipoprotein (PulS_OutS); InterPro: IPR019114 This family comprises lipoproteins from gamma proteobacterial species: pullulanase secretion protein PulS protein of Klebsiella pneumoniae (P20440 from SWISSPROT), the lipoprotein OutS protein of Erwinia chrysanthemi (Q01567 from SWISSPROT) and the functionally uncharacterised type II secretion protein EtpO (Q7BSV3 from SWISSPROT) from Escherichia coli O157:H7. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family. In addition to the PulS/OutS proteins this entry also includes other functionally uncharacterised proteins, such as YacC from Escherischia coli (P0AA95 from SWISSPROT).; PDB: 3SOL_A 3UYM_A 3UTK_A 4A56_A.
Probab=32.85 E-value=1.7e+02 Score=21.59 Aligned_cols=47 Identities=11% Similarity=0.177 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHcC-CCCChH-HhhHHHHHHhh-CCCccCHHHHHHHHHHH
Q psy11453 94 EVLGYWTVYHRFG-GGVPWR-DLFEEPIALAL-NGVNINHHLAKNIRLYE 140 (162)
Q Consensus 94 ~~~g~~~~~~r~g-G~L~w~-~ll~PAI~lA~-~Gf~vs~~l~~~l~~~~ 140 (162)
.++|...+.++.| -.||=. +|..-|+.+|. +|+.++......|.+..
T Consensus 29 L~A~~~yLK~~C~~~dlP~~~~I~~~a~~~A~~~gWd~~~~~~~~l~~~s 78 (109)
T PF09691_consen 29 LTAGARYLKNDCGRSDLPDEQEIIRAAVIFAQQRGWDTSNYNYQQLSQLS 78 (109)
T ss_dssp HHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHTT--CGG--HHHHHHHH
T ss_pred HHHHHHHHHhcCCCccCCCHHHHHHHHHHHHHHcCCCcchhHHHHHHHHH
Confidence 5788889999884 558865 69999999998 89999987777776543
No 24
>PF15116 CD52: CAMPATH-1 antigen
Probab=30.84 E-value=34 Score=21.30 Aligned_cols=15 Identities=33% Similarity=0.676 Sum_probs=12.0
Q ss_pred cCCCCCCCcCeeeEE
Q psy11453 35 CPQSMGLGGGFLMTL 49 (162)
Q Consensus 35 ~P~~~giGGg~f~l~ 49 (162)
-|..+.+|||.|.++
T Consensus 18 apA~s~lggg~~LfF 32 (44)
T PF15116_consen 18 APALSSLGGGSFLFF 32 (44)
T ss_pred CccccccCCceEEee
Confidence 466788999999765
No 25
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=28.52 E-value=1.3e+02 Score=25.88 Aligned_cols=84 Identities=20% Similarity=0.282 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHHHH----------------------hccCCCCCCCcC--eeeEEEEcCCCceEEEcccccccccCCc
Q psy11453 17 GGNAVDAAITALLCDG----------------------LSCPQSMGLGGG--FLMTLYNKTTGKAYAINAREKAPAAATL 72 (162)
Q Consensus 17 GGNAvDAAvA~~~~l~----------------------Vv~P~~~giGGg--~f~l~~~~~~~~~~~id~~~~aP~~~~~ 72 (162)
||.++|+|=++++.+. +.-|..+|-|-- .+.++||..+++...+......|..+=.
T Consensus 87 GGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtGsE~t~~avi~d~~~~~k~~~~~~~~~P~~~i~ 166 (366)
T PF00465_consen 87 GGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTGSEVTPYAVIYDEEGGRKLSIRSPKLYPDAAIL 166 (366)
T ss_dssp SHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSSGCCSSEEEEEETTTTEEEEEEEGGGS-SEEEE
T ss_pred CCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCccccccccccccccccccceeccccCcccCcceeEe
Confidence 8999999999999887 223444444322 4677888766666566666666655322
Q ss_pred chhcCCccccccCCcccccccHHHHHHHHHHHc
Q psy11453 73 GMFHGNYKAAQTGALAAAIPAEVLGYWTVYHRF 105 (162)
Q Consensus 73 ~~~~~~~~~~~~G~~sv~VPG~~~g~~~~~~r~ 105 (162)
|. ..-..=+..+.+-+.++++..+.+.|
T Consensus 167 Dp-----~l~~~lP~~~~~~~~~dal~haiE~~ 194 (366)
T PF00465_consen 167 DP-----ELTATLPPRLTASGGLDALAHAIEAY 194 (366)
T ss_dssp EG-----GGGTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred cH-----HhhcCCCHHHHhhhHHHHHHHHHHHH
Confidence 21 11112234677888899999999987
No 26
>PF15505 DUF4648: Domain of unknown function (DUF4648)
Probab=28.52 E-value=42 Score=26.45 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=22.7
Q ss_pred cccccCCcccccccHHHHHHHHHHHc
Q psy11453 80 KAAQTGALAAAIPAEVLGYWTVYHRF 105 (162)
Q Consensus 80 ~~~~~G~~sv~VPG~~~g~~~~~~r~ 105 (162)
..|.+|..|-+||+.++-||.-|++-
T Consensus 131 SlPLTG~~scG~P~iLRKMW~rHKKK 156 (170)
T PF15505_consen 131 SLPLTGSASCGVPSILRKMWMRHKKK 156 (170)
T ss_pred cccccCCcccCccHHHHHHHHhhhhh
Confidence 36778999999999999999999863
No 27
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=27.81 E-value=1.5e+02 Score=25.55 Aligned_cols=84 Identities=21% Similarity=0.293 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHH---------------------hccCCCCCCCc--CeeeEEEEcCCCceEEEcccccccccCCcc
Q psy11453 17 GGNAVDAAITALLCDG---------------------LSCPQSMGLGG--GFLMTLYNKTTGKAYAINAREKAPAAATLG 73 (162)
Q Consensus 17 GGNAvDAAvA~~~~l~---------------------Vv~P~~~giGG--g~f~l~~~~~~~~~~~id~~~~aP~~~~~~ 73 (162)
||.++|.|=++++.+. ++-|...|-|. -.+.++|+...+.-..++.....|..+=.|
T Consensus 89 GGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtgse~t~~avi~d~~~~~K~~~~~~~~~P~~~i~D 168 (370)
T cd08551 89 GGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTGSEVTPFAVITDEETGEKYGIASPELLPDVAILD 168 (370)
T ss_pred CchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcchhhcCCeEEEEECCCCeeEEEeCCCccCCEEEEC
Confidence 8899999966666551 33344444443 234667877656556676665666543222
Q ss_pred hhcCCccccccCCcccccccHHHHHHHHHHHc
Q psy11453 74 MFHGNYKAAQTGALAAAIPAEVLGYWTVYHRF 105 (162)
Q Consensus 74 ~~~~~~~~~~~G~~sv~VPG~~~g~~~~~~r~ 105 (162)
. ..-..-+..+..-|.++++..+.|.|
T Consensus 169 p-----~l~~~~P~~~~~a~~~Dal~h~~E~~ 195 (370)
T cd08551 169 P-----ELTYTLPPALTAATGMDALTHAIEAY 195 (370)
T ss_pred h-----HhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 11122345677788888888888866
No 28
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=26.65 E-value=77 Score=27.72 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCcCeeeEEEEcCCCc
Q psy11453 20 AVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGK 56 (162)
Q Consensus 20 AvDAAvA~~~~l~Vv~P~~~giGGg~f~l~~~~~~~~ 56 (162)
.+|=....++-.+..---.+|-|||||+|++-+.+++
T Consensus 267 ~IDriy~~A~~~GA~~gKl~GaG~gGFllf~~~p~k~ 303 (333)
T COG2605 267 AIDRIYELALKNGAYGGKLSGAGGGGFLLFFCDPSKR 303 (333)
T ss_pred HHHHHHHHHHhcCchhceeeccCCccEEEEEeCccch
Confidence 5777777777777777788899999999998654443
No 29
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=26.36 E-value=1.6e+02 Score=25.35 Aligned_cols=84 Identities=14% Similarity=0.197 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHH-------------------------HhccCCCCCCCc--CeeeEEEEcCCCceEEEccccccccc
Q psy11453 17 GGNAVDAAITALLCD-------------------------GLSCPQSMGLGG--GFLMTLYNKTTGKAYAINAREKAPAA 69 (162)
Q Consensus 17 GGNAvDAAvA~~~~l-------------------------~Vv~P~~~giGG--g~f~l~~~~~~~~~~~id~~~~aP~~ 69 (162)
||.++|+|=++++.+ -++-|..+|-|+ -.+.++++.+++.-..+......|..
T Consensus 86 GGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~t~~avi~~~~~~~K~~~~~~~~~P~~ 165 (367)
T cd08182 86 GGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAGTGSEVTPFATVWDGKKGIKYSLAGPALYPDT 165 (367)
T ss_pred CcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCCchhhhCCEEEEEECCCCeeeeecCCcccCCE
Confidence 899999996665543 234455555555 33567788766655566555555654
Q ss_pred CCcchhcCCccccccCCcccccccHHHHHHHHHHHc
Q psy11453 70 ATLGMFHGNYKAAQTGALAAAIPAEVLGYWTVYHRF 105 (162)
Q Consensus 70 ~~~~~~~~~~~~~~~G~~sv~VPG~~~g~~~~~~r~ 105 (162)
+=.|. .....-+..+..-|.++.+..+.+.|
T Consensus 166 ~i~Dp-----~l~~t~P~~~~a~~~~Dal~h~~E~~ 196 (367)
T cd08182 166 AIVDP-----ELTLSLPPYQTASTGLDALAHAIESY 196 (367)
T ss_pred EEECh-----HHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 32211 11122334566667777777777766
No 30
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=26.16 E-value=1.8e+02 Score=25.10 Aligned_cols=84 Identities=20% Similarity=0.268 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHH-------------------------hccCCCCCCCc--CeeeEEEEcCCCceEEEccccccccc
Q psy11453 17 GGNAVDAAITALLCDG-------------------------LSCPQSMGLGG--GFLMTLYNKTTGKAYAINAREKAPAA 69 (162)
Q Consensus 17 GGNAvDAAvA~~~~l~-------------------------Vv~P~~~giGG--g~f~l~~~~~~~~~~~id~~~~aP~~ 69 (162)
||.++|+|=++++.+. ++-|..+|-|. ..+.++++..++.-..+.....-|..
T Consensus 90 GGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~t~~avi~~~~~~~K~~~~~~~~~P~~ 169 (370)
T cd08192 90 GGSALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAGTGSEVGRAAVITDEDTGRKLIIFSPHLLPKA 169 (370)
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCchhhhhCCceEEEeCCCCeeEEeeCCcccCCE
Confidence 7899999977666542 44455554443 23456777755555556555555544
Q ss_pred CCcchhcCCccccccCCcccccccHHHHHHHHHHHc
Q psy11453 70 ATLGMFHGNYKAAQTGALAAAIPAEVLGYWTVYHRF 105 (162)
Q Consensus 70 ~~~~~~~~~~~~~~~G~~sv~VPG~~~g~~~~~~r~ 105 (162)
+=.|. ..-..-+..+..-|.++++..+.|.|
T Consensus 170 ~i~Dp-----~l~~~~P~~~~a~~~~Dal~h~~E~~ 200 (370)
T cd08192 170 AICDP-----ELTLGLPAGLTAATGMDALTHCIEAY 200 (370)
T ss_pred EEECh-----hhhhCCCHHHHHHHHHHHHHHHHHHH
Confidence 32211 11112234456666777777777766
No 31
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=25.37 E-value=1.9e+02 Score=20.44 Aligned_cols=35 Identities=11% Similarity=0.222 Sum_probs=28.6
Q ss_pred HHhhHHHHHHhhCCCccCHHHHHHHHHHHHHhhcC
Q psy11453 112 RDLFEEPIALALNGVNINHHLAKNIRLYEDHIRRS 146 (162)
Q Consensus 112 ~~ll~PAI~lA~~Gf~vs~~l~~~l~~~~~~l~~~ 146 (162)
+..++-|+.+|++|-|.|-.....+...-..|.+.
T Consensus 29 E~aIeeav~~c~~g~pFs~d~IN~vT~~mN~LAk~ 63 (84)
T PF10752_consen 29 EAAIEEAVSLCKQGEPFSTDKINEVTKEMNELAKQ 63 (84)
T ss_pred HHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHHc
Confidence 56799999999999999998888887766666544
No 32
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=24.82 E-value=1.4e+02 Score=19.99 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=25.2
Q ss_pred CCCCChHHh-hHHHHHHhhCCCccCHHHHHHHHHHHHHhhcCCCC
Q psy11453 106 GGGVPWRDL-FEEPIALALNGVNINHHLAKNIRLYEDHIRRSPQL 149 (162)
Q Consensus 106 gG~L~w~~l-l~PAI~lA~~Gf~vs~~l~~~l~~~~~~l~~~p~~ 149 (162)
|.++++.|+ +-+.+.++.. ..+...-...+.+..+++.+.|.|
T Consensus 57 G~~~t~aDi~~~~~~~~~~~-~~~~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 57 GDRPTIADVAVYPYVALAPE-GGVDLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred CCCCCHHHHHHHHHHHHHhc-cCCChhhCcHHHHHHHHHHhCcCC
Confidence 467999999 5777766543 233323334455555566666654
No 33
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=24.77 E-value=1.9e+02 Score=25.15 Aligned_cols=84 Identities=14% Similarity=0.193 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHHHH---------------------hccCCCCCCCc--CeeeEEEEcCCCceEEEcccccccccCCcc
Q psy11453 17 GGNAVDAAITALLCDG---------------------LSCPQSMGLGG--GFLMTLYNKTTGKAYAINAREKAPAAATLG 73 (162)
Q Consensus 17 GGNAvDAAvA~~~~l~---------------------Vv~P~~~giGG--g~f~l~~~~~~~~~~~id~~~~aP~~~~~~ 73 (162)
||.++|+|=++++.+. +.-|..+|-|. ..+.+++|..++.-..++....-|..+=.|
T Consensus 94 GGsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~gTgSE~t~~avi~d~~~~~K~~i~~~~~~P~~vi~D 173 (377)
T cd08188 94 GGSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTAGSGADVSQFAIITDTERKVKMAIISKSLVPDIALID 173 (377)
T ss_pred CchHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCccccccCCeEEEEeCCCCeeEEEeCccccCCEEEEC
Confidence 8999999966665442 44455555443 556777877655444555444445443221
Q ss_pred hhcCCccccccCCcccccccHHHHHHHHHHHc
Q psy11453 74 MFHGNYKAAQTGALAAAIPAEVLGYWTVYHRF 105 (162)
Q Consensus 74 ~~~~~~~~~~~G~~sv~VPG~~~g~~~~~~r~ 105 (162)
. ..-..=+..+..=|.++++..+.|.|
T Consensus 174 p-----~l~~~lP~~~~~~~~~Dal~haiE~~ 200 (377)
T cd08188 174 P-----ETLTTMPPELTAATGLDALTHAIEAY 200 (377)
T ss_pred H-----HHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 11111233455556667777777655
No 34
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=24.73 E-value=1.9e+02 Score=25.06 Aligned_cols=84 Identities=10% Similarity=0.056 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHHH---------------------hccCCCCCCCcCe--eeEEEEcCCCceEEEcccccccccCCcc
Q psy11453 17 GGNAVDAAITALLCDG---------------------LSCPQSMGLGGGF--LMTLYNKTTGKAYAINAREKAPAAATLG 73 (162)
Q Consensus 17 GGNAvDAAvA~~~~l~---------------------Vv~P~~~giGGg~--f~l~~~~~~~~~~~id~~~~aP~~~~~~ 73 (162)
||.++|+|=++++.+. ++-|..+|-|.-. +.++|+..++.-..+......|..+=.|
T Consensus 94 GGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~t~~avi~~~~~~~K~~~~~~~~~P~~~ivD 173 (377)
T cd08176 94 GGSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEVTINYVITDEERKVKMVIVDPNDIPIVAVND 173 (377)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhccCCcEEEEEcCCCceeEEeCccccCCEEEEC
Confidence 8999999977665421 3445555555544 5677776544334444444445443221
Q ss_pred hhcCCccccccCCcccccccHHHHHHHHHHHc
Q psy11453 74 MFHGNYKAAQTGALAAAIPAEVLGYWTVYHRF 105 (162)
Q Consensus 74 ~~~~~~~~~~~G~~sv~VPG~~~g~~~~~~r~ 105 (162)
. .....-+..+..-|.++++..+.|.|
T Consensus 174 p-----~l~~~~P~~~~a~~~~Dal~h~~E~~ 200 (377)
T cd08176 174 P-----ELMVGMPPGLTAATGMDALTHAIEAY 200 (377)
T ss_pred h-----HhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 11122344566777788888888766
No 35
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=23.86 E-value=2.1e+02 Score=24.70 Aligned_cols=84 Identities=18% Similarity=0.233 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHH----------------------hccCCCCCCCcC--eeeEEEEcCCCceEEEcccccccccCCc
Q psy11453 17 GGNAVDAAITALLCDG----------------------LSCPQSMGLGGG--FLMTLYNKTTGKAYAINAREKAPAAATL 72 (162)
Q Consensus 17 GGNAvDAAvA~~~~l~----------------------Vv~P~~~giGGg--~f~l~~~~~~~~~~~id~~~~aP~~~~~ 72 (162)
||.++|+|=++++.+. ++-|..+|=|.- .+.++|+...+.-..+......|..+=.
T Consensus 92 GGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGsE~t~~avi~d~~~~~K~~~~~~~~~P~~~i~ 171 (374)
T cd08189 92 GGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTGSEVTIAAVISDPETHEKYAISDPRLLPKAAAL 171 (374)
T ss_pred CccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCccccccCCeEEEEecCCCeeEEEeCCCccCCEEEE
Confidence 7899999977766643 445555554442 3566777755544455555555543322
Q ss_pred chhcCCccccccCCcccccccHHHHHHHHHHHc
Q psy11453 73 GMFHGNYKAAQTGALAAAIPAEVLGYWTVYHRF 105 (162)
Q Consensus 73 ~~~~~~~~~~~~G~~sv~VPG~~~g~~~~~~r~ 105 (162)
|. ..-..-+..+..=+.++++..+.|.|
T Consensus 172 Dp-----~l~~t~P~~~~~a~g~Dal~h~iE~~ 199 (374)
T cd08189 172 DP-----RLTLGLPPHITAATGMDALTHAVEAY 199 (374)
T ss_pred Ch-----HhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 11 11112233455556667777766655
No 36
>KOG1592|consensus
Probab=22.83 E-value=1.4e+02 Score=26.12 Aligned_cols=39 Identities=23% Similarity=0.035 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCCCCc
Q psy11453 5 VGLSTCRNILRKGGNAVDAAITALLCDGLSCPQSMGLGG 43 (162)
Q Consensus 5 ~as~aG~~iL~~GGNAvDAAvA~~~~l~Vv~P~~~giGG 43 (162)
.|-..+...|+.|+.|+||+.++.-.|=--.-..+|.|-
T Consensus 29 ~a~~~a~~~l~~~~sa~DaveaAi~~LEd~p~fNAG~GS 67 (326)
T KOG1592|consen 29 RACFLAILALKSGFSALDAVEAALRELEDDPKFNAGRGS 67 (326)
T ss_pred HHHHhhhHHhhcCCccHHHHHHHHHHHhcCCccCCCccc
Confidence 355667778889999999999987666544445555543
No 37
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=22.05 E-value=72 Score=20.98 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=16.2
Q ss_pred HHhhHHHHHHhhCCCccCH
Q psy11453 112 RDLFEEPIALALNGVNINH 130 (162)
Q Consensus 112 ~~ll~PAI~lA~~Gf~vs~ 130 (162)
..-++++|+.++.|-||+-
T Consensus 34 ~K~~~~~I~~~~aG~pVd~ 52 (59)
T smart00685 34 AKQFDDAIKAARAGRPVDL 52 (59)
T ss_pred HhhHHHHHHHHHCCCCCCh
Confidence 4567899999999999974
No 38
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=20.11 E-value=2.5e+02 Score=24.11 Aligned_cols=84 Identities=19% Similarity=0.175 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHH--------------------hccCCCCCCCc--CeeeEEEEcCCCceEEEcccccccccCCcch
Q psy11453 17 GGNAVDAAITALLCDG--------------------LSCPQSMGLGG--GFLMTLYNKTTGKAYAINAREKAPAAATLGM 74 (162)
Q Consensus 17 GGNAvDAAvA~~~~l~--------------------Vv~P~~~giGG--g~f~l~~~~~~~~~~~id~~~~aP~~~~~~~ 74 (162)
||.++|++=++++.+. ++-|..+|-|. ..+.+++|.+++.-..|......|..+=.|
T Consensus 92 GGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagTGsE~t~~avi~d~~~~~K~~i~~~~~~P~~~i~D- 170 (357)
T cd08181 92 GGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTAGTGSEVTQYSVLTDHEEGTKKGFGHDLIFPKLAFLD- 170 (357)
T ss_pred CchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCCcchhhhCCeEEEEECCCCeeeeccCCccccCEEEEC-
Confidence 8999999966665431 34455554443 335667777555545555444445432221
Q ss_pred hcCCccccccCCcccccccHHHHHHHHHHHc
Q psy11453 75 FHGNYKAAQTGALAAAIPAEVLGYWTVYHRF 105 (162)
Q Consensus 75 ~~~~~~~~~~G~~sv~VPG~~~g~~~~~~r~ 105 (162)
+..-..-+..+..-+.++++..+.|.|
T Consensus 171 ----p~l~~~~P~~~~a~~g~Dal~ha~E~~ 197 (357)
T cd08181 171 ----PKYTLTLPKEVTINTALDALSHAVEGY 197 (357)
T ss_pred ----hHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 111122345677778889998888877
Done!