RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11453
(162 letters)
>g2dg5.1 d.153.1.6 (A:37-387,B:391-580)
Gamma-glutamyltranspeptidase, GGT {Escherichia coli
[TaxId: 562]}
Length = 541
Score = 108 bits (270), Expect = 9e-29
Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 7/143 (4%)
Query: 11 RNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAA 70
+IL++GGNAVDAA+ ++ PQ+ LGGG M + +K G AI+ RE APA A
Sbjct: 27 VDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRSK-NGNTTAIDFREMAPAKA 85
Query: 71 TLGMFHGNY-----KAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNG 125
T MF + K + T LA+ P V G+ ++ G +P + + LA +G
Sbjct: 86 TRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKY-GTMPLNKVVQPAFKLARDG 144
Query: 126 VNINHHLAKNIRLYEDHIRRSPQ 148
+N LA +++ Y + + +
Sbjct: 145 FIVNDALADDLKTYGSEVLPNHE 167
>d2nlza1 d.153.1.6 (A:3-539) Cephalosporin acylase {Bacillus
halodurans [TaxId: 86665]}
Length = 537
Score = 104 bits (261), Expect = 1e-27
Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 6/140 (4%)
Query: 11 RNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAA 70
+IL+ GGNA+DAAI + P S G+G ++ K GK + +N +AP +
Sbjct: 36 LDILKAGGNAIDAAIATATALTVLEPTSNGIGSDAFALVWTK--GKLHGLNGSGRAPMSL 93
Query: 71 TLGMFHGN---YKAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVN 127
T+ + G + +P + + + G +P I A G
Sbjct: 94 TMEAVKAKGYEQELPPYGVIPVTVPGAPGAWAELAKMY-GNLPLAASLAPAIRYAEEGYP 152
Query: 128 INHHLAKNIRLYEDHIRRSP 147
+ LAK + D ++
Sbjct: 153 VTPTLAKYWKAAYDRVKTEW 172
>g2nqo.1 d.153.1.6 (A:29-375,B:380-565)
Gamma-glutamyltranspeptidase, GGT {Helicobacter pylori
[TaxId: 210]}
Length = 533
Score = 103 bits (257), Expect = 5e-27
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 7/140 (5%)
Query: 11 RNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAA 70
+ +L +GGNA+DAA+ + P + +GGG ++ G+ A++ REKAP A
Sbjct: 24 QKVLEEGGNAIDAAVAIGFALAVVHPAAGNIGGGGFAVIHLA-NGENVALDFREKAPLKA 82
Query: 71 TLGMFHGNY-----KAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNG 125
T MF K ++ G LAA +P V G + ++G L + I LA NG
Sbjct: 83 TKNMFLDKQGNVVPKLSEDGYLAAGVPGTVAGMEAMLKKYGTK-KLSQLIDPAIKLAENG 141
Query: 126 VNINHHLAKNIRLYEDHIRR 145
I+ A+ ++ + +
Sbjct: 142 YAISQRQAETLKEARERFLK 161
>d2i3oa1 d.153.1.6 (A:1-516) Hypothetical protein Ta0994
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 516
Score = 100 bits (248), Expect = 6e-26
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 3/137 (2%)
Query: 11 RNILRKGGNAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAA 70
R+IL++GGN DAA+ ++ GLGG + ++ G+ +N +A A
Sbjct: 27 RDILKRGGNIFDAALAVSAMLCVTQNNLCGLGGDLFALIRDE-NGQIMDLNGSGQASRAV 85
Query: 71 TLGMF--HGNYKAAQTGALAAAIPAEVLGYWTVYHRFGGGVPWRDLFEEPIALALNGVNI 128
++ + G K + G AA + G W R + D+ E I A G I
Sbjct: 86 SIDYYESMGLTKIPERGPYAAITVPGIAGSWDEIFRKFATMDIADILEPAIRTASAGFPI 145
Query: 129 NHHLAKNIRLYEDHIRR 145
+ + +I I +
Sbjct: 146 TQNYSDSIARSAPVIGQ 162
>g1apy.1 d.153.1.5 (A:,B:) Glycosylasparaginase
(aspartylglucosaminidase, AGA) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 302
Score = 26.2 bits (57), Expect = 2.2
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 12 NILRKGGNAVDAAITAL-LCDGLSCPQSMGLGG 43
L GG+A+DA + +C+ C S+G GG
Sbjct: 21 RALASGGSALDAVESGCAMCEREQCDGSVGFGG 53
>g2gac.1 d.153.1.5 (A:,B:) Glycosylasparaginase
(aspartylglucosaminidase, AGA) {Flavobacterium
meningosepticum [TaxId: 238]}
Length = 275
Score = 25.0 bits (54), Expect = 4.5
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 12 NILRKGGNAVDAAITAL-LCDGLSCPQSMGLGG 43
+L KGG A+DA + L + +S+G GG
Sbjct: 21 KVLSKGGKALDAVEKGVRLVEDDPTERSVGYGG 53
>d1e25a_ e.3.1.1 (A:) beta-Lactamase, class A {Pseudomonas
aeruginosa, PER-1 [TaxId: 287]}
Length = 278
Score = 24.1 bits (51), Expect = 9.3
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 49 LYNKTTGKAYAINAREKAPAAAT 71
++ + IN EK P +
Sbjct: 23 VWGPDDLEPLLINPFEKFPMQSV 45
>d1iysa_ e.3.1.1 (A:) beta-Lactamase, class A {Escherichia coli,
TOHO-1 [TaxId: 562]}
Length = 261
Score = 24.0 bits (51), Expect = 9.6
Identities = 17/114 (14%), Positives = 31/114 (27%), Gaps = 17/114 (14%)
Query: 19 NAVDAAITALLCDGLSCPQSMGLGGGFLMTLYNKTTGKAYAINAREKAPAAATLGMFHGN 78
N+V + AL GG + L N A E+ +T +
Sbjct: 1 NSVQQQLEALEK---------SSGGRLGVALINTADNSQILYRADERFAMCSTSKVMAAA 51
Query: 79 --YKAAQTGALAAAIPAEVLGYWTV------YHRFGGGVPWRDLFEEPIALALN 124
K +++ E+ V G + +L + + N
Sbjct: 52 AVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEKHVNGTMTLAELGAAALQYSDN 105
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.424
Gapped
Lambda K H
0.267 0.0458 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 614,511
Number of extensions: 27234
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 14
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.3 bits)