BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11456
(574 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P21328|RTJK_DROME RNA-directed DNA polymerase from mobile element jockey
OS=Drosophila melanogaster GN=pol PE=1 SV=1
Length = 916
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 89/223 (39%), Gaps = 10/223 (4%)
Query: 17 FIDDLLIIGRGKDLDLLIQRFQHTLDEIHLWAETNGTLFSTDPGKSVCIDFHRLRVARSP 76
+ DD ++ + K + Q LD WAE + + K + F R P
Sbjct: 679 YADDTAVLTKSKSILAATSGLQEYLDAFQQWAENWNVRINAE--KCANVTFAN-RTGSCP 735
Query: 77 ILSYNGTPLHFVTNNKFLGLLWDAKMNWSLHIQYIKSRAMNSLNALKMVSCKKFGVRRDV 136
+S NG + K+LG+ D K+ +S HI I+ + + + + +
Sbjct: 736 GVSLNGRLIRHHQAYKYLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRNKLSLGC 795
Query: 137 LLKFYKSFTLPILDYGCYIYSSAKDSVLNKLNTVHHAGIRIATGALRSSPVVSLYVDSGI 196
+ YKS P L YG +Y A S LNK+ + +R +GA + D +
Sbjct: 796 KVNIYKSILAPCLFYGLQVYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRDIERDLKV 855
Query: 197 PPLFLRRSKLMLNYVSKISASPFNPAQKVLFHQDMSGTIFTVN 239
P L + + Y+ +++ P + A+K+ GT VN
Sbjct: 856 PKLGDKLQNIAQKYMERLNVHPNSLARKL-------GTAAVVN 891
>sp|P16425|Y2R2_DROME Putative 115 kDa protein in type-1 retrotransposable element R1DM
OS=Drosophila melanogaster PE=4 SV=1
Length = 1021
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 86/212 (40%), Gaps = 5/212 (2%)
Query: 1 MNDIFDVIKPPLKRVLFIDDLLIIGRGKDLDLLIQRFQHTLDEIHLWAETNGTLFSTDPG 60
M+ + ++P + + DDLL++ G +L ++ + + W G ST
Sbjct: 647 MDVLLQRLQPYCQLSAYADDLLLLVEGNSRAVLEEKGAQLMSIVETWGAEVGDCLSTS-- 704
Query: 61 KSVCIDFHRLRVARSPILSYNGTPLHFVTNNKFLGLLWDAKMNWSLHIQYIKSRAMNSLN 120
K+V I + + R+P + + G L +V + ++LG+ M + HI ++ R +
Sbjct: 705 KTV-IMLLKGALRRAPTVRFAGRNLPYVRSCRYLGITVSEGMKFLTHIASLRQRMTGVVG 763
Query: 121 ALKMVSCKKFGVRRDVLLKFYKSFTLPILDYGCYIYSSAKDSVL--NKLNTVHHAGIRIA 178
AL V +G Y P + +G ++ + V +L + +
Sbjct: 764 ALARVLRADWGFSPRARRTIYDGLMAPCVLFGAPVWYDTAEQVAAQRRLASCQRLILLGC 823
Query: 179 TGALRSSPVVSLYVDSGIPPLFLRRSKLMLNY 210
R+ V+L V G PPL L L + Y
Sbjct: 824 LSVCRTVSTVALQVLGGAPPLDLAAKLLAIKY 855
>sp|Q03269|PO11_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 337
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 94/212 (44%), Gaps = 16/212 (7%)
Query: 1 MNDIFDVIKPPLKRVL-FIDDLLIIGRGKDLDLLIQRFQHTLDEIHLWAETNGTLFSTDP 59
MN + D + +R++ + DDL+I+ G + + + ++ W G S
Sbjct: 17 MNGLLDRLSAMNERIVAYADDLMIVANGNSRMEMERMADECMRIVYEWGREVGVSISEK- 75
Query: 60 GKSVCI--------DFHRLRVARSPILSYNGTPLHFVTNNKFLGLLWDAKMNWSLHIQYI 111
K+VCI D R+RVA + + + +V + ++LG+ +M+++ I+ +
Sbjct: 76 -KTVCIMLKGKLNVDGRRMRVA---VAEGTISSIGYVKSARYLGVCMGERMSFADDIRGL 131
Query: 112 KSRAMNSLNALKMVSCKKFGVRRDVLLKFYKSFTLPILDYGCYI-YSSAKDSVLNK-LNT 169
++ M ++ L+ V K++GV++ + K L + YG + Y K + + +N+
Sbjct: 132 ITKVMGAIGGLRRVMRKEWGVKKKTAYTWAKGLLLAGVMYGSSVWYEGMKYKTMRESMNS 191
Query: 170 VHHAGIRIATGALRSSPVVSLYVDSGIPPLFL 201
+ + R+ ++ V G P L
Sbjct: 192 IQRCAMYACLRVCRTVSTEAMQVLLGWLPCDL 223
>sp|Q03277|PO11_SCICO Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 (Fragment) OS=Sciara coprophila PE=4 SV=1
Length = 1004
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 3/143 (2%)
Query: 15 VLFIDDLLIIGRGKDLDLLIQRFQHTLDEIHLWAETNGTLFSTDPGKSVCIDFH-RLRVA 73
V F DD I+ L + L H W + GK+ CI L
Sbjct: 635 VAFADDGTIVIGANSRSALEELGTRCLQLCHEWGKR--VCVPVSAGKTTCILMKGHLSAN 692
Query: 74 RSPILSYNGTPLHFVTNNKFLGLLWDAKMNWSLHIQYIKSRAMNSLNALKMVSCKKFGVR 133
R P + NGT + + + K LG+ +MN+ H Y++ + + + L+ V K +G+
Sbjct: 693 RPPCIRLNGTSISYKSEVKHLGIFVAERMNFRPHFVYLRGKILGLVGCLRRVMRKSWGLG 752
Query: 134 RDVLLKFYKSFTLPILDYGCYIY 156
R YK + + YG ++
Sbjct: 753 RRATCILYKGLFVACMSYGASVW 775
>sp|P21329|RTJK_DROFU RNA-directed DNA polymerase from mobile element jockey
OS=Drosophila funebris GN=jockey\pol PE=1 SV=1
Length = 916
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/209 (19%), Positives = 85/209 (40%), Gaps = 3/209 (1%)
Query: 17 FIDDLLIIGRGKDLDLLIQRFQHTLDEIHLWAETNGTLFSTDPGKSVCIDFHRLRVARSP 76
+ DD+ ++ + + Q LD WA S + GK + F + P
Sbjct: 679 YADDIAVLTKSTCIVEATDALQEYLDAFQEWAVKWNV--SINAGKCANVTFTNA-IRDCP 735
Query: 77 ILSYNGTPLHFVTNNKFLGLLWDAKMNWSLHIQYIKSRAMNSLNALKMVSCKKFGVRRDV 136
++ NG+ L K+LG++ D + + HI ++ + + + + + D
Sbjct: 736 GVTINGSLLSHTHEYKYLGVILDRSLTFRRHITSLQHSFRTRITKMNWLLAARNKLSLDN 795
Query: 137 LLKFYKSFTLPILDYGCYIYSSAKDSVLNKLNTVHHAGIRIATGALRSSPVVSLYVDSGI 196
+K YK P L Y +Y A + LNK+ + +R +GA + D +
Sbjct: 796 KVKIYKCIVAPGLFYAIQVYGIAARTHLNKIRVLQAKMLRKISGAPWYMRTRDIECDLKV 855
Query: 197 PPLFLRRSKLMLNYVSKISASPFNPAQKV 225
P + + ++ Y ++ + P + A+++
Sbjct: 856 PKIGDKIREVAKKYHERLDSHPNSLARRL 884
>sp|Q9NBX4|RTXE_DROME Probable RNA-directed DNA polymerase from transposon X-element
OS=Drosophila melanogaster GN=X-element\ORF2 PE=3 SV=1
Length = 908
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 11/168 (6%)
Query: 17 FIDDLLIIGRGK---DLDLLIQRFQHTLDEIHLWAETNGTLFSTDPGKSVCIDFHRLRVA 73
F DD+ + R + D IQ F + E WA ++ +VC R
Sbjct: 674 FADDVCVTYRSRCEHDAADGIQDFAYRFSE---WARRWNIGINSSKSNNVCFTLKR---- 726
Query: 74 RSPILSY-NGTPLHFVTNNKFLGLLWDAKMNWSLHIQYIKSRAMNSLNALKMVSCKKFGV 132
R+P Y P+ K+LG+L D ++ +S H+ I++R + + + +
Sbjct: 727 RTPPPVYIEEVPVPQPNAAKYLGVLLDRRLTFSKHVTDIRTRLRAKVAKHYWLLSSRSKL 786
Query: 133 RRDVLLKFYKSFTLPILDYGCYIYSSAKDSVLNKLNTVHHAGIRIATG 180
L YK P YGC I+ A DS + ++ + + R+ TG
Sbjct: 787 SLSNKLTIYKQILAPNWKYGCQIWGLACDSHIKRIQAIQNKVARLITG 834
>sp|Q03271|PO13_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 3 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 383
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 7/145 (4%)
Query: 17 FIDDLLIIGRGKDLDLLIQRFQHTLDEIHLWAETNGTLFSTDPGKSVCI----DFHRL-R 71
F DDLL++ +G + L Q L ++ + G S K+VC+ + L R
Sbjct: 4 FADDLLLLVQGNRRNELEQSASEALSVVYRYGTNIGVEVS--DSKTVCMMLKGSLNMLNR 61
Query: 72 VARSPILSYNGTPLHFVTNNKFLGLLWDAKMNWSLHIQYIKSRAMNSLNALKMVSCKKFG 131
V + + V ++LG+ M++S+HI +K R ++ L+ V K +G
Sbjct: 62 VVHVSTNGMDDKRIRCVDRVRYLGVNVGIGMDFSVHIDGMKRRLTTAIMRLRGVLRKSWG 121
Query: 132 VRRDVLLKFYKSFTLPILDYGCYIY 156
++R V+ K LP + YG ++
Sbjct: 122 LKRGVVSMVVKGLFLPAVMYGASVW 146
>sp|Q8AII1|POL_SIVTN Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate TAN1)
GN=gag-pol PE=3 SV=4
Length = 1462
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 20/145 (13%)
Query: 291 DTAPVVFQKMFHEVINIKYPNHTICFTDGSKSPDV----TGCAFSIGDMVQSTLLNPINS 346
+T P++ ++++ +++ P + DG+ + D G + G L N N
Sbjct: 1032 NTPPLI--RLWYNLLSDPIPEAETFYVDGAANRDSKKGRAGYVTNRGRYRSKDLENTTNQ 1089
Query: 347 IFSAELIAIFLCLEAIIDSPSNQFLIVSDSRSALAALANV--RFSNPLVTKVFSTWSYLK 404
AEL A+ L L+ DS + Q IV+DS+ + L + + +P+V ++ K
Sbjct: 1090 --QAELWAVDLALK---DSGA-QVNIVTDSQYVMGVLQGLPDQSDSPIVEQIIQ-----K 1138
Query: 405 LCDKEVSFI-WCPSHCGIRGNEIVD 428
L K ++ W P+H GI GNE VD
Sbjct: 1139 LTQKTAIYLAWVPAHKGIGGNEEVD 1163
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 12/82 (14%)
Query: 350 AELIAIFLCLEAIIDSPSNQFLIVSDSRSALAALAN--VRFSNPLVTKVFSTWSYLKLCD 407
AEL+AI L L+ DS IV+DS+ AL +++ + +P+V ++ +L
Sbjct: 1063 AELMAILLALQ---DSKET-VNIVTDSQYALGVISSQPTQSESPIVQQIIE-----ELTK 1113
Query: 408 KE-VSFIWCPSHCGIRGNEIVD 428
KE V W P+H GI GNE +D
Sbjct: 1114 KEQVYLTWVPAHKGIGGNEKID 1135
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 15/135 (11%)
Query: 299 KMFHEVINIKYPNHTICFTDGSKSPDVTGCAFSI---GDMVQSTLLNPINSIFSAELIAI 355
K+++ + P + + G A I G TL N N A+L AI
Sbjct: 1041 KLWYTLTKEPIPKEDVYYVGACNRNSKEGKAGYISQYGKQRVETLENTTNQ--QAKLTAI 1098
Query: 356 FLCLEAIIDSPSNQFLIVSDSRSALAALAN--VRFSNPLVTKVFSTWSYLKLCDKEVSFI 413
+ LE DS N IV+DS+ A+ L + +PLV ++ + L + +++
Sbjct: 1099 KMALE---DSGPN-VNIVTDSQYAMGILTAQPTQSDSPLVEQIIA----LMIQKQQIYLQ 1150
Query: 414 WCPSHCGIRGNEIVD 428
W P+H GI GNE +D
Sbjct: 1151 WVPAHKGIGGNEEID 1165
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 310 PNHTICFTDGS----KSPDVTGCAFSIGDMVQSTLLNPINSIFSAELIAIFLCLEAIIDS 365
P + + DG+ G G L N N AEL AI + LE DS
Sbjct: 1048 PGEDVYYVDGACNRQSKEGKAGYITQQGKQRVQQLENTTNQ--QAELTAIKMALE---DS 1102
Query: 366 PSNQFLIVSDSRSALAALAN--VRFSNPLVTKVFSTWSYLKLCDKEVSFI-WCPSHCGIR 422
+ IV+DS+ A+ L + +PLV ++ + ++ KE ++ W P+H GI
Sbjct: 1103 -GPKVNIVTDSQYAMGILTAQPTQSDSPLVEQIIA-----QMVQKEAIYLQWVPAHKGIG 1156
Query: 423 GNEIVD 428
GNE +D
Sbjct: 1157 GNEEID 1162
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 41.2 bits (95), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 18/143 (12%)
Query: 292 TAPVVFQKMFHEVINIKYPNHTICFTDGS----KSPDVTGCAFSIGDMVQSTLLNPINSI 347
T P+V K+++ + P + + DG+ G G L N N
Sbjct: 1033 TPPLV--KLWYTLTKEPIPKEDVYYVDGACNRNSREGKAGYITQYGKQRVEKLENTTNQ- 1089
Query: 348 FSAELIAIFLCLEAIIDSPSNQFLIVSDSRSALAALAN--VRFSNPLVTKVFSTWSYLKL 405
AEL+AI + LE DS N IV+DS+ A+ L + +PL+ ++ + L +
Sbjct: 1090 -QAELMAIKMALE---DSGPN-VNIVTDSQYAMGILTAQPTQSDSPLIEQIIA----LMV 1140
Query: 406 CDKEVSFIWCPSHCGIRGNEIVD 428
++ W P+ GI GNE +D
Sbjct: 1141 QKHQIYLQWVPADKGIGGNEEID 1163
>sp|O89940|POL_HV1SE Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate SE6165) GN=gag-pol PE=3 SV=3
Length = 1433
Score = 40.8 bits (94), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 16/143 (11%)
Query: 291 DTAPVVFQKMFHEVINIKYPNHTICFTDGSKSPDVT-GCAFSIGDMVQSTLLNPINSI-F 348
+T P+V K+++ + P + DG+ + + G A + D + ++ +
Sbjct: 1003 NTPPLV--KLWYRLETEPIPGAETYYVDGAANRETKLGKAGYVTDKGKQKIITLTETTNQ 1060
Query: 349 SAELIAIFLCLEAIIDSPSNQFLIVSDSRSALAALANV--RFSNPLVTKVFSTWSYLKLC 406
AEL AI L L+ DS S + IV+DS+ AL + R LV ++ +L
Sbjct: 1061 KAELQAIQLALQ---DSRS-EVNIVTDSQYALGIIQAQPDRSEAELVNQIIE-----QLI 1111
Query: 407 DKEVSFI-WCPSHCGIRGNEIVD 428
KE ++ W P+H GI GNE VD
Sbjct: 1112 KKEKVYLSWVPAHKGIGGNEQVD 1134
>sp|Q11075|YWV1_CAEEL Uncharacterized protein B0403.1 OS=Caenorhabditis elegans
GN=B0403.1 PE=4 SV=1
Length = 198
Score = 40.8 bits (94), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 94 LGLLWDAKMNWSLHIQYIKSRAMNSLNALKMVSCKKFGVRRDVLLKFYKSFTLPILDYGC 153
L + D K+N+ HI+Y+ + A L +++ C +F + K Y + P+L+YGC
Sbjct: 13 LDIFVDCKLNFQKHIEYVSNSAF--LKCRQLLRCFRF-TNVSLYFKLYNVYVQPLLNYGC 69
Query: 154 YIYS 157
+Y+
Sbjct: 70 EVYN 73
>sp|O41798|POL_HV19N Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 40.8 bits (94), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 16/143 (11%)
Query: 291 DTAPVVFQKMFHEVINIKYPNHTICFTDGSKSPDVT-GCAFSIGDMVQSTLLNPINSI-F 348
+T P+V K+++++ P + DG+ + + G A + D + ++ +
Sbjct: 1005 NTPPLV--KLWYQLETEPIPGAETYYVDGAANRETKLGKAGHVTDKGKQKIITLTETTNQ 1062
Query: 349 SAELIAIFLCLEAIIDSPSNQFLIVSDSRSALAALANV--RFSNPLVTKVFSTWSYLKLC 406
AEL AI L L+ DS + IV+DS+ AL + R + LV ++ +L
Sbjct: 1063 KAELHAIQLALQ---DS-RPEVNIVTDSQYALGIIQAQPDRSGSELVNQIIE-----QLI 1113
Query: 407 DKEVSFI-WCPSHCGIRGNEIVD 428
KE ++ W P+H GI GNE VD
Sbjct: 1114 KKEKVYLSWVPAHKGIGGNEQVD 1136
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=pol PE=3 SV=1
Length = 1145
Score = 40.8 bits (94), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 18/124 (14%)
Query: 316 FTDGSKSPDVTGCAFSIGD-MVQSTLLNPINSIFSAELIAIFLCLEAIIDSPSNQFLIVS 374
+TDG K A+ + + L P+ AE +AI + LE D+ Q IV+
Sbjct: 623 YTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALE---DTRDKQVNIVT 678
Query: 375 DS----RSALAALANVRFSNPLVTKVFSTWSYLK-LCDKE-VSFIWCPSHCGIRGNEIVD 428
DS ++ L NP W ++ + +KE V F W P H GI GN++ D
Sbjct: 679 DSYYCWKNITEGLGLEGPQNPW-------WPIIQNIREKEIVYFAWVPGHKGIYGNQLAD 731
Query: 429 VAAK 432
AAK
Sbjct: 732 EAAK 735
>sp|Q03272|PO14_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 4 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 392
Score = 40.8 bits (94), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 73 ARSPILSYNGTPLHFVTNNKFLGLLWDAKMNWSLHIQYIKSRAMNSLNALKMVSCKKFGV 132
AR+ + G + F + ++LG+ +DA + S H +Y++ + + + L+ ++ ++G+
Sbjct: 73 ARNLKIELGGKSISFEQSVRYLGVHFDANLGISAHCKYLREKLVPLFSDLRKLAQCQWGL 132
Query: 133 RRDVLLKFYKSFTLPILDYGC---YIYSSAKDSVLNKLNTVHHAGIRIA-TGALRSSPVV 188
L YK +P + Y Y + D +L L H I IA T RS+
Sbjct: 133 GHKALETIYKGVFVPTVCYASARWYKEGAHTDRILEDL----HRQILIAITRCYRSTSYE 188
Query: 189 SLYVDSGIPPLFLR 202
+ V +G P+ ++
Sbjct: 189 AACVLAGTLPICIQ 202
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 40.4 bits (93), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 12/82 (14%)
Query: 350 AELIAIFLCLEAIIDSPSNQFLIVSDSRSALAALAN--VRFSNPLVTKVFSTWSYLKLCD 407
AEL+A+ + L+ DS Q IV+DS+ L +++ + +P+V ++ +L
Sbjct: 1065 AELMAVLIALQ---DS-KEQVNIVTDSQYVLGIISSQPTQSDSPIVQQIIE-----ELTK 1115
Query: 408 KE-VSFIWCPSHCGIRGNEIVD 428
KE V W P+H GI GNE +D
Sbjct: 1116 KERVYLTWVPAHKGIGGNEKID 1137
>sp|Q9QSR3|POL_HV1VI Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate VI850) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 16/143 (11%)
Query: 291 DTAPVVFQKMFHEVINIKYPNHTICFTDGSKSPDVT-GCAFSIGDMVQSTLLNPINSI-F 348
+T P+V K+++++ + DG+ + + G A + D + +++ +
Sbjct: 1000 NTPPLV--KLWYQLETEPIAGADTFYVDGASNRETKKGKAGYVTDKGKQKVVSLTETTNQ 1057
Query: 349 SAELIAIFLCLEAIIDSPSNQFLIVSDSRSALAALANV--RFSNPLVTKVFSTWSYLKLC 406
AEL AI+L L+ DS S + IV+DS+ AL + + + +V ++ +L
Sbjct: 1058 KAELQAIYLALQ---DSGS-EVNIVTDSQYALGIIQAQPDKSESEIVNQIIE-----QLI 1108
Query: 407 DKEVSFI-WCPSHCGIRGNEIVD 428
KE ++ W P+H GI GNE VD
Sbjct: 1109 QKERVYLSWVPAHKGIGGNEQVD 1131
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=pol PE=1 SV=1
Length = 1146
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 316 FTDGSKSPDVTGCAFSIGD-MVQSTLLNPINSIFSAELIAIFLCLEAIIDSPSNQFLIVS 374
+TDG K A+ + + L P+ AE +AI + LE D+ Q IV+
Sbjct: 624 YTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALE---DTRDKQVNIVT 679
Query: 375 DSRSALAALANVRFSNPLVTKVFSTWSYLK-LCDKE-VSFIWCPSHCGIRGNEIVDVAAK 432
DS N+ L W ++ + +KE V F W P H GI GN++ D AAK
Sbjct: 680 DS---YYCWKNITEGLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQLADEAAK 736
>sp|Q95SX7|RTBS_DROME Probable RNA-directed DNA polymerase from transposon BS
OS=Drosophila melanogaster GN=RTase PE=2 SV=1
Length = 906
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 64/165 (38%), Gaps = 5/165 (3%)
Query: 17 FIDDLLIIGRGKDLDLLIQRFQHTLDEIHLWAETNGTLFSTDPGKSV--CIDFHRLRVAR 74
+ DD+ ++ + + Q L + W + + +P K++ C L
Sbjct: 678 YADDIALLYSSNCCNEAARGLQEYLTTLAAWCKR--WILKVNPQKTINPCFTLKTLSPVT 735
Query: 75 SPILSYNGTPLHFVTNNKFLGLLWDAKMNWSLHIQYIKSRAMNSLNALKMVSCKKFGVRR 134
+PI G L + K+LG+ D ++ + H++ R + L+ + +K +
Sbjct: 736 API-ELEGVILDQPSQAKYLGITLDKRLTFGPHLKATTRRCYQRMQQLRWLLNRKSTMTL 794
Query: 135 DVLLKFYKSFTLPILDYGCYIYSSAKDSVLNKLNTVHHAGIRIAT 179
Y PI YG I+ A S N++ + + +R T
Sbjct: 795 RAKRAVYVHCVAPIWLYGIQIWGIAAKSNYNRIQVLQNRAMRAIT 839
>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=pol PE=1 SV=1
Length = 1146
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 316 FTDGSKSPDVTGCAFSIGD-MVQSTLLNPINSIFSAELIAIFLCLEAIIDSPSNQFLIVS 374
+TDG K A+ + + L P+ AE +AI + LE D+ Q IV+
Sbjct: 624 YTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALE---DTRDKQVNIVT 679
Query: 375 DSRSALAALANVRFSNPLVTKVFSTWSYLK-LCDKE-VSFIWCPSHCGIRGNEIVDVAAK 432
DS N+ L W ++ + +KE V F W P H GI GN++ D AAK
Sbjct: 680 DS---YYCWKNITEGLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQLADEAAK 736
>sp|P24740|POL_HV1U4 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate U455) GN=gag-pol PE=1 SV=3
Length = 1428
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 16/143 (11%)
Query: 291 DTAPVVFQKMFHEVINIKYPNHTICFTDGSKSPDVT-GCAFSIGDMVQSTLLNPINSI-F 348
+T P+V K+++++ + DG+ + + G A + D + +++ +
Sbjct: 998 NTPPLV--KLWYQLEKDPIAGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLTETTNQ 1055
Query: 349 SAELIAIFLCLEAIIDSPSNQFLIVSDSRSALAALANV--RFSNPLVTKVFSTWSYLKLC 406
EL AI L L+ DS S + IV+DS+ AL + R + +V ++ KL
Sbjct: 1056 KTELHAIHLALQ---DSGS-EVNIVTDSQYALGIIQAQPDRSESEIVNQIIE-----KLI 1106
Query: 407 DKEVSFI-WCPSHCGIRGNEIVD 428
+KE ++ W P+H GI GNE VD
Sbjct: 1107 EKEKVYLSWVPAHKGIGGNEQVD 1129
>sp|Q03270|PO12_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 2 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 410
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Query: 17 FIDDLLIIGRGKDLDLLIQRFQHTLDEIHLWAETNGTLFSTDPGKSVCIDFHRLRVARSP 76
F DD+ I+ G + + ++ ++ W E G S + K+VC+ V +
Sbjct: 34 FADDVAILAEGNTRKEVERVINEKMEIVYKWGEKMGVSVSEE--KTVCMLLKGKYVTSNR 91
Query: 77 ILSYNGT-----PLHFVTNNKFLGLLWDAKMNWSLHIQYIKSRAMNSLNALKMVSCKKFG 131
+ + T + +V+ ++LG+ M + H++ +K + + LK V + +G
Sbjct: 92 AVRVSKTINVYKRIKYVSCFRYLGVNVTEGMGFGEHVRGMKVKVAKGVQKLKRVLRRDWG 151
Query: 132 VRRDVLLKFYKSFTLPILDY 151
+RR + LP + Y
Sbjct: 152 LRRAASHLVLRGTFLPQVSY 171
>sp|P35757|HIFB1_HAEIF Chaperone protein HifB OS=Haemophilus influenzae GN=hifB PE=3 SV=2
Length = 241
Score = 32.7 bits (73), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 203 RSKLMLNYV-SKISASPFNPAQKVLFHQDMSGTIFTVNKPKPLYVRFREIANFINVLDSS 261
RS+L L Y +K+S PF+ +KV+F G + V+ P Y+ N+I +L +
Sbjct: 143 RSRLKLFYRPAKLSLDPFDAMKKVVFKATPKGVL--VDNQTPYYM------NYIGLLHQN 194
Query: 262 EIAPYVRFVPPWSNC 276
+ A V+ V P+S
Sbjct: 195 KPAKNVKMVAPFSQA 209
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 216,997,495
Number of Sequences: 539616
Number of extensions: 9049000
Number of successful extensions: 18707
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 18696
Number of HSP's gapped (non-prelim): 28
length of query: 574
length of database: 191,569,459
effective HSP length: 123
effective length of query: 451
effective length of database: 125,196,691
effective search space: 56463707641
effective search space used: 56463707641
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)