Query psy11456
Match_columns 574
No_of_seqs 254 out of 1820
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 18:54:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11456.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11456hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.8 1.5E-20 5.1E-25 170.7 10.6 127 310-437 5-151 (154)
2 2kq2_A Ribonuclease H-related 99.8 1.1E-21 3.8E-26 176.3 2.0 127 309-439 3-139 (147)
3 3h08_A RNH (ribonuclease H); R 99.8 4E-20 1.4E-24 166.3 7.1 119 311-437 3-144 (146)
4 3qio_A GAG-POL polyprotein; RN 99.8 2.2E-19 7.6E-24 161.4 11.5 124 309-437 9-147 (150)
5 1jl1_A Ribonuclease HI; RNAse 99.8 2.6E-19 8.9E-24 162.4 7.2 124 312-439 4-145 (155)
6 3p1g_A Xenotropic murine leuke 99.8 4.1E-19 1.4E-23 161.9 8.4 122 312-437 23-156 (165)
7 2e4l_A Ribonuclease HI, RNAse 99.8 4.8E-19 1.6E-23 161.2 7.5 123 311-437 5-145 (158)
8 1ril_A Ribonuclease H; hydrola 99.7 1.1E-18 3.8E-23 159.9 4.5 125 311-439 7-150 (166)
9 3hst_B Protein RV2228C/MT2287; 99.6 3.1E-16 1.1E-20 139.9 9.2 121 312-437 3-133 (141)
10 2lsn_A Reverse transcriptase; 99.6 2.2E-16 7.4E-21 143.6 7.3 125 311-436 6-162 (165)
11 3u3g_D Ribonuclease H, RNAse H 99.6 3.5E-16 1.2E-20 139.3 8.1 120 312-436 3-136 (140)
12 2zd1_A Reverse transcriptase/r 99.6 8E-16 2.7E-20 168.3 12.3 116 310-434 437-557 (557)
13 1mu2_A HIV-2 RT; HIV-2 reverse 99.6 1.1E-15 3.6E-20 167.2 12.8 117 310-435 434-555 (555)
14 2ehg_A Ribonuclease HI; RNAse 99.6 2.3E-15 8E-20 135.6 8.8 116 313-437 2-134 (149)
15 1zbf_A Ribonuclease H-related 98.9 1.7E-09 5.8E-14 95.4 5.8 116 310-429 9-139 (142)
16 4htu_A Ribonuclease H, RNAse H 98.5 5.4E-07 1.8E-11 77.8 9.3 98 310-409 3-115 (134)
17 3fsi_A RT, reverse transcripta 95.9 0.0072 2.5E-07 58.5 5.3 61 11-101 193-253 (255)
18 1rw3_A POL polyprotein; RNA an 94.4 0.03 1E-06 59.0 5.0 71 312-385 346-427 (455)
19 1mu2_A HIV-2 RT; HIV-2 reverse 91.8 0.18 6.2E-06 54.4 6.1 60 11-101 177-237 (555)
20 2zd1_B P51 RT; P51/P66, hetero 90.3 0.25 8.5E-06 51.5 5.2 61 11-101 177-237 (428)
21 2zd1_A Reverse transcriptase/r 89.9 0.24 8.4E-06 53.4 4.9 45 11-63 179-224 (557)
22 3kyl_A Telomerase reverse tran 78.9 0.82 2.8E-05 47.6 2.3 44 10-67 334-377 (596)
23 1rw3_A POL polyprotein; RNA an 67.3 1.7 5.7E-05 45.5 1.3 61 11-101 197-257 (455)
24 3alr_A Nanos protein; zinc-fin 45.5 8.8 0.0003 30.6 1.7 26 519-544 72-99 (106)
25 1go4_E MAD1 (mitotic arrest de 37.7 47 0.0016 26.5 4.8 35 34-70 28-64 (100)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.83 E-value=1.5e-20 Score=170.66 Aligned_cols=127 Identities=20% Similarity=0.241 Sum_probs=97.0
Q ss_pred CCceEEEecCCCCCCC-----eeEEEEecce---eeeeeCCCCccchHHHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q psy11456 310 PNHTICFTDGSKSPDV-----TGCAFSIGDM---VQSTLLNPINSIFSAELIAIFLCLEAIIDSPSNQFLIVSDSRSALA 381 (574)
Q Consensus 310 ~~~~~i~tDGS~~~~~-----~G~~~~~~~~---~~~~~l~~~~sv~~aE~~ai~~al~~~~~~~~~~~~I~~Ds~sa~~ 381 (574)
.+.+.||||||...++ .|+|++..+. ..+..++..+|++.||+.|+..||+.+.+.+..++.|+|||+.+++
T Consensus 5 ~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~ 84 (154)
T 2qkb_A 5 GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTIN 84 (154)
T ss_dssp TTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHH
T ss_pred CCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHh
Confidence 4678999999987542 6889886532 2445666678999999999999999999888899999999999999
Q ss_pred HHhcC--------CC-Cc--HH-HHHHHHHHHHhhhcCceEEEEEecCCCCCCcchhhhhhhcCCCCC
Q psy11456 382 ALANV--------RF-SN--PL-VTKVFSTWSYLKLCDKEVSFIWCPSHCGIRGNEIVDVAAKNPSDL 437 (574)
Q Consensus 382 ~l~~~--------~~-~~--~~-~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~~ 437 (574)
.|.+. .. .. +. .+.+...+..+.. +..|.|.|||||+|++|||.||+|||+|+..
T Consensus 85 ~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~-~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~ 151 (154)
T 2qkb_A 85 GITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREGAKQ 151 (154)
T ss_dssp HHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT-TCEEEEEECCTTSSCHHHHHHHHHHHHHHTC
T ss_pred hhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc-CCceEEEEccCCCCCHhHHHHHHHHHHHHHh
Confidence 99861 11 11 11 1223333333332 4679999999999999999999999998765
No 2
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.82 E-value=1.1e-21 Score=176.31 Aligned_cols=127 Identities=14% Similarity=0.068 Sum_probs=98.8
Q ss_pred CCCceEEEecCCCCCCCeeEEEEecc--e--eeee-eC--CC--CccchHHHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q psy11456 309 YPNHTICFTDGSKSPDVTGCAFSIGD--M--VQST-LL--NP--INSIFSAELIAIFLCLEAIIDSPSNQFLIVSDSRSA 379 (574)
Q Consensus 309 ~~~~~~i~tDGS~~~~~~G~~~~~~~--~--~~~~-~l--~~--~~sv~~aE~~ai~~al~~~~~~~~~~~~I~~Ds~sa 379 (574)
+++.+.||||||...+..|+|++... . ..+. .. +. ..+++.||+.|+..||+.+.+.+. ++.|+|||+.+
T Consensus 3 ~~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i 81 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGI 81 (147)
T ss_dssp TTSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTH
T ss_pred CCCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHH
Confidence 45678999999999877899987632 1 1222 22 22 368999999999999999887666 99999999988
Q ss_pred HHHHhcCCCCc-HHHHHHHHHHHHhhhcCceEEEEEecCCCCCCcchhhhhhhcCCCCCCC
Q psy11456 380 LAALANVRFSN-PLVTKVFSTWSYLKLCDKEVSFIWCPSHCGIRGNEIVDVAAKNPSDLAP 439 (574)
Q Consensus 380 ~~~l~~~~~~~-~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~~~~ 439 (574)
.+.+.+....+ +......+.+..|.. .|.|.|||||+|++|||.||+|||+|+...+
T Consensus 82 ~~w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 139 (147)
T 2kq2_A 82 AFWATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIRD 139 (147)
T ss_dssp HHHTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhccc
Confidence 88777765544 444555555555543 8999999999999999999999999988743
No 3
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.80 E-value=4e-20 Score=166.31 Aligned_cols=119 Identities=20% Similarity=0.122 Sum_probs=89.4
Q ss_pred CceEEEecCCCCCC--CeeEEEEecc--e--eeeeeCCCCccchHHHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHh
Q psy11456 311 NHTICFTDGSKSPD--VTGCAFSIGD--M--VQSTLLNPINSIFSAELIAIFLCLEAIIDSPSNQFLIVSDSRSALAALA 384 (574)
Q Consensus 311 ~~~~i~tDGS~~~~--~~G~~~~~~~--~--~~~~~l~~~~sv~~aE~~ai~~al~~~~~~~~~~~~I~~Ds~sa~~~l~ 384 (574)
+.+.||||||...+ ..|+|++... . ..+..+ ..+|++.||+.|+..||+.+.+ ..++.|+|||+.+++.|.
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMN 79 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHH
Confidence 46899999998764 3788877532 1 223333 3688999999999999999875 589999999999999998
Q ss_pred cCC---------------C--CcHHHHHHHHHHHHhhhcCceEEEEEecCCCCCCcchhhhhhhcCCCCC
Q psy11456 385 NVR---------------F--SNPLVTKVFSTWSYLKLCDKEVSFIWCPSHCGIRGNEIVDVAAKNPSDL 437 (574)
Q Consensus 385 ~~~---------------~--~~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~~ 437 (574)
+.. . ...+.+.|...+. ...|.|.|||||+|++|||.||+|||+|+..
T Consensus 80 ~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~-----~~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 80 EGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTT-----LHRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp SSHHHHHHHTTCC----CCCTTHHHHHHHHHHHH-----HSEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHh-----hCceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 721 0 1124444444332 2469999999999999999999999988754
No 4
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.80 E-value=2.2e-19 Score=161.44 Aligned_cols=124 Identities=22% Similarity=0.284 Sum_probs=90.8
Q ss_pred CCCceEEEecCCCCCC--CeeEEEEecce-eeeeeCCCCccchHHHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHhc
Q psy11456 309 YPNHTICFTDGSKSPD--VTGCAFSIGDM-VQSTLLNPINSIFSAELIAIFLCLEAIIDSPSNQFLIVSDSRSALAALAN 385 (574)
Q Consensus 309 ~~~~~~i~tDGS~~~~--~~G~~~~~~~~-~~~~~l~~~~sv~~aE~~ai~~al~~~~~~~~~~~~I~~Ds~sa~~~l~~ 385 (574)
.++.+.||||||...+ ..|+|++..+. .....+ ..+|++.||+.|+..||+.+ ..++.|+|||+.+++.|.+
T Consensus 9 ~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i~~ 83 (150)
T 3qio_A 9 IVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIITQ 83 (150)
T ss_dssp CTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHHHH
Confidence 3467899999997654 36888776432 223333 47899999999999999985 4899999999999999987
Q ss_pred C-----------CCCcHH-HHHHHHHHHHhhhcCceEEEEEecCCCCCCcchhhhhhhcCCCCC
Q psy11456 386 V-----------RFSNPL-VTKVFSTWSYLKLCDKEVSFIWCPSHCGIRGNEIVDVAAKNPSDL 437 (574)
Q Consensus 386 ~-----------~~~~~~-~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~~ 437 (574)
. ....++ -+++...+..+-.....|.|.|||||+|++|||.||+||++|+..
T Consensus 84 w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 84 WIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 3 111111 122333322222347789999999999999999999999999875
No 5
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.77 E-value=2.6e-19 Score=162.43 Aligned_cols=124 Identities=18% Similarity=0.213 Sum_probs=91.8
Q ss_pred ceEEEecCCCCCC--CeeEEEEecc--e--eeeeeCCCCccchHHHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHhc
Q psy11456 312 HTICFTDGSKSPD--VTGCAFSIGD--M--VQSTLLNPINSIFSAELIAIFLCLEAIIDSPSNQFLIVSDSRSALAALAN 385 (574)
Q Consensus 312 ~~~i~tDGS~~~~--~~G~~~~~~~--~--~~~~~l~~~~sv~~aE~~ai~~al~~~~~~~~~~~~I~~Ds~sa~~~l~~ 385 (574)
.+.||||||...+ ..|+|++... . ..+..+ ...|++.||+.|+..||+.+.+ ..++.|+|||+.+++.|.+
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~~ 80 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGITQ 80 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHHT
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHHH
Confidence 5789999999864 3788877642 1 223333 3578999999999999999875 3899999999999999987
Q ss_pred --------CCCC---cHH-HHHHHHHHHHhhhcCceEEEEEecCCCCCCcchhhhhhhcCCCCCCC
Q psy11456 386 --------VRFS---NPL-VTKVFSTWSYLKLCDKEVSFIWCPSHCGIRGNEIVDVAAKNPSDLAP 439 (574)
Q Consensus 386 --------~~~~---~~~-~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~~~~ 439 (574)
.... .++ -+.+...+..+.. ...|.|.|||||+|++|||.||+|||+|+....
T Consensus 81 w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 145 (155)
T 1jl1_A 81 WIHNWKKRGWKTADKKPVKNVDLWQRLDAALG-QHQIKWEWVKGHAGHPENERADELARAAAMNPT 145 (155)
T ss_dssp THHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT-TCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhhcccccccCCccCCHHHHHHHHHHHc-cCceEEEEcCCCCCCHHHHHHHHHHHHHHhccc
Confidence 2111 111 1233333333433 368999999999999999999999999987633
No 6
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.77 E-value=4.1e-19 Score=161.85 Aligned_cols=122 Identities=25% Similarity=0.287 Sum_probs=90.1
Q ss_pred ceEEEecCCCCC--CCeeEEEEecc---eeeeeeCCCCccchHHHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHhcC
Q psy11456 312 HTICFTDGSKSP--DVTGCAFSIGD---MVQSTLLNPINSIFSAELIAIFLCLEAIIDSPSNQFLIVSDSRSALAALANV 386 (574)
Q Consensus 312 ~~~i~tDGS~~~--~~~G~~~~~~~---~~~~~~l~~~~sv~~aE~~ai~~al~~~~~~~~~~~~I~~Ds~sa~~~l~~~ 386 (574)
.+.||||||... +..|+|++... ......++..+|++.||+.|+..||+++ ...++.|+|||+.+++.+-..
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~iw~~ 99 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATAHVH 99 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHHHSC
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhhhcc
Confidence 589999999973 44677765422 2222345667899999999999999998 368999999999999998432
Q ss_pred CCCcHH-HHH-HHHHHHHhhhcCceEEEEEecCCCC-----CCcchhhhhhhcCCCCC
Q psy11456 387 RFSNPL-VTK-VFSTWSYLKLCDKEVSFIWCPSHCG-----IRGNEIVDVAAKNPSDL 437 (574)
Q Consensus 387 ~~~~~~-~~~-i~~~~~~l~~~~~~v~~~Wvp~H~g-----i~gNe~AD~~Ak~a~~~ 437 (574)
....++ -++ +.+.+..+. .+..|.|.|||||+| ++|||.||+|||+|+..
T Consensus 100 ~~g~~v~n~dl~~~l~~~l~-~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~ 156 (165)
T 3p1g_A 100 SEGREIKNKNEILALLKALF-LPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMK 156 (165)
T ss_dssp CCSCCCSSHHHHHHHHHHTT-SBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHh-cCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhc
Confidence 222221 122 222223333 478899999999999 99999999999988765
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.76 E-value=4.8e-19 Score=161.16 Aligned_cols=123 Identities=20% Similarity=0.278 Sum_probs=90.5
Q ss_pred CceEEEecCCCCCC--CeeEEEEecc--e--eeeeeCCCCccchHHHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHh
Q psy11456 311 NHTICFTDGSKSPD--VTGCAFSIGD--M--VQSTLLNPINSIFSAELIAIFLCLEAIIDSPSNQFLIVSDSRSALAALA 384 (574)
Q Consensus 311 ~~~~i~tDGS~~~~--~~G~~~~~~~--~--~~~~~l~~~~sv~~aE~~ai~~al~~~~~~~~~~~~I~~Ds~sa~~~l~ 384 (574)
..+.||||||...+ ..|+|++... . ..+..++ .+|++.||+.|+..||+.+.+ ..++.|+|||+.+++.|.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 81 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFS-LTTNNRMELLAPIVALEALKE--PCKIILTSDSQYMRQGIM 81 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEE-EECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCcC-CCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHH
Confidence 46899999998753 3688887632 1 2233333 578999999999999999864 389999999999999998
Q ss_pred c--------CCCC---cHH-HHHHHHHHHHhhhcCceEEEEEecCCCCCCcchhhhhhhcCCCCC
Q psy11456 385 N--------VRFS---NPL-VTKVFSTWSYLKLCDKEVSFIWCPSHCGIRGNEIVDVAAKNPSDL 437 (574)
Q Consensus 385 ~--------~~~~---~~~-~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~~ 437 (574)
+ .... .++ -..+...+..+.. +..|.|.|||||+|++|||.||+|||+|+..
T Consensus 82 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 82 TWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ-LHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp THHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccccccCCCcccCHHHHHHHHHHHc-cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 8 3211 111 1222233333332 3689999999999999999999999998865
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.73 E-value=1.1e-18 Score=159.88 Aligned_cols=125 Identities=20% Similarity=0.164 Sum_probs=91.5
Q ss_pred CceEEEecCCCCCC--CeeEEEEecc--e--eeeeeCCCCccchHHHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHh
Q psy11456 311 NHTICFTDGSKSPD--VTGCAFSIGD--M--VQSTLLNPINSIFSAELIAIFLCLEAIIDSPSNQFLIVSDSRSALAALA 384 (574)
Q Consensus 311 ~~~~i~tDGS~~~~--~~G~~~~~~~--~--~~~~~l~~~~sv~~aE~~ai~~al~~~~~~~~~~~~I~~Ds~sa~~~l~ 384 (574)
..+.||||||...+ ..|+|+|... . ..+... ...|++.||+.|+..||+.+.+. .++.|+|||+.+++.|.
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~ 83 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFT 83 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHh
Confidence 46789999999864 3788888642 1 122222 35789999999999999988653 58999999999999998
Q ss_pred cC---------CC-Cc--HH-HHHHHHHHHHhhhcCceEEEEEecCCCCCCcchhhhhhhcCCCCCCC
Q psy11456 385 NV---------RF-SN--PL-VTKVFSTWSYLKLCDKEVSFIWCPSHCGIRGNEIVDVAAKNPSDLAP 439 (574)
Q Consensus 385 ~~---------~~-~~--~~-~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~~~~ 439 (574)
+. .. .+ ++ -.++...+..+.. ...|.|.|||||+|++|||.||+|||+|+....
T Consensus 84 ~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 84 EGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMA-PHRVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp SSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHT-TSEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred hhHHHHHHhcccccccCCccCcHHHHHHHHHHHh-cCeEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 81 21 11 11 1223333333332 358999999999999999999999999988744
No 9
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.64 E-value=3.1e-16 Score=139.94 Aligned_cols=121 Identities=14% Similarity=0.189 Sum_probs=94.4
Q ss_pred ceEEEecCCCCCC--CeeEEEEecce-------eeeeeCCCCccchHHHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q psy11456 312 HTICFTDGSKSPD--VTGCAFSIGDM-------VQSTLLNPINSIFSAELIAIFLCLEAIIDSPSNQFLIVSDSRSALAA 382 (574)
Q Consensus 312 ~~~i~tDGS~~~~--~~G~~~~~~~~-------~~~~~l~~~~sv~~aE~~ai~~al~~~~~~~~~~~~I~~Ds~sa~~~ 382 (574)
.+.||||||...+ ..|+|++..+. .....+ ..+|++.||+.|+..||+.+.+.+..++.|+|||+.+++.
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~ 81 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQ 81 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHH
Confidence 4789999998754 47888775321 122333 3689999999999999999998888999999999999999
Q ss_pred HhcCCC-CcHHHHHHHHHHHHhhhcCceEEEEEecCCCCCCcchhhhhhhcCCCCC
Q psy11456 383 LANVRF-SNPLVTKVFSTWSYLKLCDKEVSFIWCPSHCGIRGNEIVDVAAKNPSDL 437 (574)
Q Consensus 383 l~~~~~-~~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~~ 437 (574)
+.+... .++....+...+..+......|.|.|||+ +|||.||+|||+|+..
T Consensus 82 i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 82 MSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDAMDA 133 (141)
T ss_dssp HTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred HhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHHHHH
Confidence 998653 33444445555556665668999999995 9999999999987654
No 10
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.64 E-value=2.2e-16 Score=143.59 Aligned_cols=125 Identities=16% Similarity=0.174 Sum_probs=86.6
Q ss_pred CceEEEecCCCCCC--C-----eeEEEEecc------eeeeeeC-CCCccchHHHHHHHHHHHHHHHcCCCCcEEEEecc
Q psy11456 311 NHTICFTDGSKSPD--V-----TGCAFSIGD------MVQSTLL-NPINSIFSAELIAIFLCLEAIIDSPSNQFLIVSDS 376 (574)
Q Consensus 311 ~~~~i~tDGS~~~~--~-----~G~~~~~~~------~~~~~~l-~~~~sv~~aE~~ai~~al~~~~~~~~~~~~I~~Ds 376 (574)
..++||||||...+ . .|+|++... ....+.. ....+...||+.|+..||+.++..+ .+|.|+|||
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~-~~v~I~TDS 84 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIP-GPVLVITDS 84 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEESC
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeCh
Confidence 45799999997643 2 688887531 1223333 2467788899999999999887644 579999999
Q ss_pred HHHHHHHhc--------CCC---CcHH-HHHHHHHHHHhhhcCceEEEEEecCCCCC------CcchhhhhhhcCCCC
Q psy11456 377 RSALAALAN--------VRF---SNPL-VTKVFSTWSYLKLCDKEVSFIWCPSHCGI------RGNEIVDVAAKNPSD 436 (574)
Q Consensus 377 ~sa~~~l~~--------~~~---~~~~-~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi------~gNe~AD~~Ak~a~~ 436 (574)
+-+++.+.. ... ..++ -+++...+..+-.....|.|.|||||+|+ +|||.||+||++|+.
T Consensus 85 ~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 85 FYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp HHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence 999999964 111 1121 12233333333333457999999999996 589999999998763
No 11
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.63 E-value=3.5e-16 Score=139.30 Aligned_cols=120 Identities=19% Similarity=0.212 Sum_probs=89.3
Q ss_pred ceEEEecCCCCCC--CeeEEEEecc----e--eeeeeCCCCccchHHHHHHHHHHHHHHHcCCCC----cEEEEeccHHH
Q psy11456 312 HTICFTDGSKSPD--VTGCAFSIGD----M--VQSTLLNPINSIFSAELIAIFLCLEAIIDSPSN----QFLIVSDSRSA 379 (574)
Q Consensus 312 ~~~i~tDGS~~~~--~~G~~~~~~~----~--~~~~~l~~~~sv~~aE~~ai~~al~~~~~~~~~----~~~I~~Ds~sa 379 (574)
.+.||||||...+ ..|+|++..+ . .....++ .+|++.||+.|+..||+.+.+.+.. ++.|+|||+.+
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~v 81 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIG-ETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELI 81 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEE-EECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHH
T ss_pred eEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCC-CCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHH
Confidence 5789999998754 4788887633 1 2223333 4799999999999999999887666 99999999999
Q ss_pred HHHHhcCCCC-cHHHHHHHHHHHHh-hhcCceEEEEEecCCCCCCcchhhhhhhcCCCC
Q psy11456 380 LAALANVRFS-NPLVTKVFSTWSYL-KLCDKEVSFIWCPSHCGIRGNEIVDVAAKNPSD 436 (574)
Q Consensus 380 ~~~l~~~~~~-~~~~~~i~~~~~~l-~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~ 436 (574)
++.+.+.... ++-...+...+..+ ...-..|.|.|||+ +|||.||+|||+|+.
T Consensus 82 i~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~ 136 (140)
T 3u3g_D 82 VRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPR----EKNARADELVNEAID 136 (140)
T ss_dssp HHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCG----GGGHHHHHHHHHHHH
T ss_pred HHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCc----hhhHHHHHHHHHHHH
Confidence 9999986642 22222233333334 33335899999994 999999999998764
No 12
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.63 E-value=8e-16 Score=168.26 Aligned_cols=116 Identities=25% Similarity=0.348 Sum_probs=87.9
Q ss_pred CCceEEEecCCCCCC--CeeEEEEecce-eeeeeCCCCccchHHHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHhcC
Q psy11456 310 PNHTICFTDGSKSPD--VTGCAFSIGDM-VQSTLLNPINSIFSAELIAIFLCLEAIIDSPSNQFLIVSDSRSALAALANV 386 (574)
Q Consensus 310 ~~~~~i~tDGS~~~~--~~G~~~~~~~~-~~~~~l~~~~sv~~aE~~ai~~al~~~~~~~~~~~~I~~Ds~sa~~~l~~~ 386 (574)
.+.+.||||||...+ ..|+|++..+. ...... ..+|++.||+.|+..||+.+ ..++.|+|||+.|++.+.+.
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~~ 511 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQAQ 511 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTTC
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhcC
Confidence 457899999998653 36778776432 222333 46899999999999999998 67999999999999999986
Q ss_pred CCC--cHHHHHHHHHHHHhhhcCceEEEEEecCCCCCCcchhhhhhhcCC
Q psy11456 387 RFS--NPLVTKVFSTWSYLKLCDKEVSFIWCPSHCGIRGNEIVDVAAKNP 434 (574)
Q Consensus 387 ~~~--~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a 434 (574)
... .++.+++.+ .+.. ...|.|.|||||+|++|||.||+|||+|
T Consensus 512 ~~~~~~~l~~~~~~---~l~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 512 PDKSESELVNQIIE---QLIK-KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp CSEESSHHHHHHHH---HHHH-CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred CccCCHHHHHHHHH---HHhc-CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 543 245555443 2332 4589999999999999999999999986
No 13
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.62 E-value=1.1e-15 Score=167.23 Aligned_cols=117 Identities=21% Similarity=0.294 Sum_probs=90.8
Q ss_pred CCceEEEecCCCCCCC--eeEEEEecce-eeeeeCCCCccchHHHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHhcC
Q psy11456 310 PNHTICFTDGSKSPDV--TGCAFSIGDM-VQSTLLNPINSIFSAELIAIFLCLEAIIDSPSNQFLIVSDSRSALAALANV 386 (574)
Q Consensus 310 ~~~~~i~tDGS~~~~~--~G~~~~~~~~-~~~~~l~~~~sv~~aE~~ai~~al~~~~~~~~~~~~I~~Ds~sa~~~l~~~ 386 (574)
++.+.+|||||...++ .|+|++.... .....+ ..+|++.||+.|+..||+. ...++.|+|||+-+++.+.+.
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~~ 508 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQ 508 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHTC
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCEeeccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhcc
Confidence 4578999999987643 6788776432 223333 3678999999999999998 568999999999999999974
Q ss_pred CC--CcHHHHHHHHHHHHhhhcCceEEEEEecCCCCCCcchhhhhhhcCCC
Q psy11456 387 RF--SNPLVTKVFSTWSYLKLCDKEVSFIWCPSHCGIRGNEIVDVAAKNPS 435 (574)
Q Consensus 387 ~~--~~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~ 435 (574)
.. ..++.+++.+.+ . .+..|.|.|||||+|++|||.||+|||+|+
T Consensus 509 ~~~~~~~l~~~~~~~~---~-~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 509 PTESESKIVNQIIEEM---I-KKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp CSEESCHHHHHHHHHH---H-HCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHh---c-cCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 42 234555544432 2 257899999999999999999999999885
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.59 E-value=2.3e-15 Score=135.58 Aligned_cols=116 Identities=19% Similarity=0.222 Sum_probs=87.5
Q ss_pred eEEEecCCCCC---CCeeE-EEEecce---ee--eeeCC---CCccchHHHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q psy11456 313 TICFTDGSKSP---DVTGC-AFSIGDM---VQ--STLLN---PINSIFSAELIAIFLCLEAIIDSPSNQFLIVSDSRSAL 380 (574)
Q Consensus 313 ~~i~tDGS~~~---~~~G~-~~~~~~~---~~--~~~l~---~~~sv~~aE~~ai~~al~~~~~~~~~~~~I~~Ds~sa~ 380 (574)
+.||||||..+ +..|+ |++..+. .. ...++ ...|++.||+.|+..||+.+.+.+..++.|+|||+.++
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi 81 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVI 81 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHH
Confidence 57999999872 45785 8765331 11 12233 37899999999999999999988888999999999999
Q ss_pred HHHhcCCCCc-----HHHHHHHHHHHHhhhcCceEEEEEecCCCCCCcchhhhhhhcCCCCC
Q psy11456 381 AALANVRFSN-----PLVTKVFSTWSYLKLCDKEVSFIWCPSHCGIRGNEIVDVAAKNPSDL 437 (574)
Q Consensus 381 ~~l~~~~~~~-----~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~~ 437 (574)
+.+.+....+ ++.++|...+..+ .|.|.|||+ ++||.||+|||.|+..
T Consensus 82 ~~i~~~w~~~~~~~~~l~~~i~~l~~~~-----~v~~~~V~~----~~N~~AD~LA~~a~~~ 134 (149)
T 2ehg_A 82 KQMNGEYKVKAKRIIPLYEKAIELKKKL-----NATLIWVPR----EENKEADRLSRVAYEL 134 (149)
T ss_dssp HHHTTSSCCCCTTHHHHHHHHHHHHHHH-----TCEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred HHHhCccccCCHHHHHHHHHHHHHHhcC-----CEEEEEcCC----cccHHHHHHHHHHHHh
Confidence 9999874432 2344444433333 499999999 5999999999987655
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=98.87 E-value=1.7e-09 Score=95.37 Aligned_cols=116 Identities=13% Similarity=0.000 Sum_probs=85.8
Q ss_pred CCceEEEecCCCCCC--CeeEEEEecce----eeeeeCCCCccchHHHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q psy11456 310 PNHTICFTDGSKSPD--VTGCAFSIGDM----VQSTLLNPINSIFSAELIAIFLCLEAIIDSPSNQFLIVSDSRSALAAL 383 (574)
Q Consensus 310 ~~~~~i~tDGS~~~~--~~G~~~~~~~~----~~~~~l~~~~sv~~aE~~ai~~al~~~~~~~~~~~~I~~Ds~sa~~~l 383 (574)
+..+.||||||...+ ..|+|+|.... ..+..++ .+|++.||+.|+..||+.+.+... ++.|+|||+-+++.+
T Consensus 9 ~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~-~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~ 86 (142)
T 1zbf_A 9 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWV 86 (142)
T ss_dssp CCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEE-EECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHH
T ss_pred CCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccC-CcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHH
Confidence 456789999998753 47889887421 1222233 578999999999999999998666 999999999999999
Q ss_pred hcCCCC-c--------HHHHHHHHHHHHhhhcCceEEEEEecCCCCCCcchhhhh
Q psy11456 384 ANVRFS-N--------PLVTKVFSTWSYLKLCDKEVSFIWCPSHCGIRGNEIVDV 429 (574)
Q Consensus 384 ~~~~~~-~--------~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~ 429 (574)
.+.... + .+-+.+......++.. .++...+.-|++.-||+.||.
T Consensus 87 ~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~--~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 87 KDKKAKSTLVRNEETALIWKLVDEAEEWLNTH--TYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp HHTCCCCCCCCSTTTHHHHHHHHHHHHHHHHC--CCCCCEEECCHHHHCSCTTCC
T ss_pred HcCCccCCCCCCcccHHHHHHHHHHHHHHhhC--CCceeEEEeccCccCcCcccc
Confidence 887621 1 2455555555556554 455666888899999999984
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=98.47 E-value=5.4e-07 Score=77.83 Aligned_cols=98 Identities=14% Similarity=0.042 Sum_probs=67.1
Q ss_pred CCceEEEecCCCCCC--CeeEEEEecc----eeeeeeCCCCccchHHHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q psy11456 310 PNHTICFTDGSKSPD--VTGCAFSIGD----MVQSTLLNPINSIFSAELIAIFLCLEAIIDSPSNQFLIVSDSRSALAAL 383 (574)
Q Consensus 310 ~~~~~i~tDGS~~~~--~~G~~~~~~~----~~~~~~l~~~~sv~~aE~~ai~~al~~~~~~~~~~~~I~~Ds~sa~~~l 383 (574)
+....||||||...+ ..|+|.|... ......++ .+|++.||+.|+..||+.+.+.... +.|+|||+-+++-+
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~-~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi 80 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWV 80 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCC-CCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHH
Confidence 566789999998754 3677544322 12223333 6899999999999999999875444 89999999999999
Q ss_pred hcCCCC---------cHHHHHHHHHHHHhhhcCce
Q psy11456 384 ANVRFS---------NPLVTKVFSTWSYLKLCDKE 409 (574)
Q Consensus 384 ~~~~~~---------~~~~~~i~~~~~~l~~~~~~ 409 (574)
.+..-. ..+-+.+.++...|+....+
T Consensus 81 ~~~~~kt~~~~~vkN~dLw~~ld~~~~~l~~~~~~ 115 (134)
T 4htu_A 81 KDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYE 115 (134)
T ss_dssp HHTCCCCCCCCSSTTHHHHHHHHHHHHHHHHCCCC
T ss_pred HcCCcccCCCCCccCHHHHHHHHHHHHHHHhCCCC
Confidence 864211 13455555555566655433
No 17
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=95.90 E-value=0.0072 Score=58.55 Aligned_cols=61 Identities=21% Similarity=0.157 Sum_probs=44.2
Q ss_pred CceEEEEecceEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCCcEEEEeccCCCCCCCceEeCCeeeeeccC
Q psy11456 11 PLKRVLFIDDLLIIGRGKDLDLLIQRFQHTLDEIHLWAETNGTLFSTDPGKSVCIDFHRLRVARSPILSYNGTPLHFVTN 90 (574)
Q Consensus 11 ~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~W~~~~gl~~n~~~~Kt~~~~f~~~~~~~~~~~~l~~~~i~~~~~ 90 (574)
++.+..|.||+.|. +++.++... .++.+.++.+++|+.+| ++||+... ++
T Consensus 193 ~~~v~~Y~DDili~--s~~~eeh~~----~l~~v~~~L~~~gl~l~--~~Kc~f~~----------------------~~ 242 (255)
T 3fsi_A 193 DLILLQYVDDLLLA--ATSELDCQQ----GTRALLQTLGNLGYRAS--AKKAQICQ----------------------KQ 242 (255)
T ss_dssp TCEEEEETTEEEEE--ESSHHHHHH----HHHHHHHHHHHHTCCBC--TTTCEEEE----------------------SE
T ss_pred CcEEEEEcCCeEEE--eCCHHHHHH----HHHHHHHHHHHCCeEEC--HHHhcccC----------------------Cc
Confidence 45789999995554 566655544 45667777778899999 99997432 35
Q ss_pred ceEEEEEEcCC
Q psy11456 91 NKFLGLLWDAK 101 (574)
Q Consensus 91 ~kyLGv~id~~ 101 (574)
++|||..++.+
T Consensus 243 ~~fLG~~i~~~ 253 (255)
T 3fsi_A 243 VKYLGYLLKEG 253 (255)
T ss_dssp EEETTEEEETT
T ss_pred eEEEEEEEeCC
Confidence 78888888764
No 18
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=94.42 E-value=0.03 Score=59.00 Aligned_cols=71 Identities=11% Similarity=-0.051 Sum_probs=46.3
Q ss_pred ceEEEecCCCCCCCeeEEEEecc-------eeeeeeCC---CCccchHHHHHHHHHHHHHHHcC-CCCcEEEEeccHHHH
Q psy11456 312 HTICFTDGSKSPDVTGCAFSIGD-------MVQSTLLN---PINSIFSAELIAIFLCLEAIIDS-PSNQFLIVSDSRSAL 380 (574)
Q Consensus 312 ~~~i~tDGS~~~~~~G~~~~~~~-------~~~~~~l~---~~~sv~~aE~~ai~~al~~~~~~-~~~~~~I~~Ds~sa~ 380 (574)
...+|||+|. .+.|+.+...+ ...+..+. ..-++++-|+.||..|++..... .+.++.|+||+. ++
T Consensus 346 ~~~l~~DAS~--~~~gavL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~-~~ 422 (455)
T 1rw3_A 346 PFELFVDEKQ--GYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA-VE 422 (455)
T ss_dssp TTSCEEEEEE--CSSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-TT
T ss_pred cEEEEEeccC--CcceeEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-HH
Confidence 4678999984 34444222211 01222332 34678899999999999988764 567999999996 55
Q ss_pred HHHhc
Q psy11456 381 AALAN 385 (574)
Q Consensus 381 ~~l~~ 385 (574)
..+.+
T Consensus 423 ~~l~~ 427 (455)
T 1rw3_A 423 ALVKQ 427 (455)
T ss_dssp TTSSS
T ss_pred HHhCC
Confidence 55544
No 19
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=91.81 E-value=0.18 Score=54.45 Aligned_cols=60 Identities=12% Similarity=-0.022 Sum_probs=42.1
Q ss_pred CceEEEEecceEEEEecC-CHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCCcEEEEeccCCCCCCCceEeCCeeeeecc
Q psy11456 11 PLKRVLFIDDLLIIGRGK-DLDLLIQRFQHTLDEIHLWAETNGTLFSTDPGKSVCIDFHRLRVARSPILSYNGTPLHFVT 89 (574)
Q Consensus 11 ~~~~~~yADD~~i~~~~~-~~~~~~~~lq~~l~~l~~W~~~~gl~~n~~~~Kt~~~~f~~~~~~~~~~~~l~~~~i~~~~ 89 (574)
++.+..|.||+.|. ++ +.++....|++.++. +.++||.+| ++||. + ++
T Consensus 177 ~~~v~~Y~DDIli~--s~~~~~eh~~~l~~v~~~----l~~~gl~l~--~~K~~---~--------------------~~ 225 (555)
T 1mu2_A 177 DVIIIQYMDDILIA--SDRTDLEHDRVVLQLKEL----LNGLGFSTP--DEKFQ---K--------------------DP 225 (555)
T ss_dssp TSEEEEETTEEEEE--ECSCHHHHHHHHHHHHHH----HHHTTCBCC--STTEE---C--------------------SS
T ss_pred CcEEEEEecceEEe--cCCCHHHHHHHHHHHHHH----HHHcCCccC--HHHhc---c--------------------CC
Confidence 55689999997665 44 566776666555554 556789999 99983 1 13
Q ss_pred CceEEEEEEcCC
Q psy11456 90 NNKFLGLLWDAK 101 (574)
Q Consensus 90 ~~kyLGv~id~~ 101 (574)
+++|||..++.+
T Consensus 226 ~~~fLG~~i~~~ 237 (555)
T 1mu2_A 226 PYHWMGYELWPT 237 (555)
T ss_dssp SEEETTEEECSS
T ss_pred ceeEEeEEEeCC
Confidence 577888888764
No 20
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=90.29 E-value=0.25 Score=51.46 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=33.5
Q ss_pred CceEEEEecceEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCCcEEEEeccCCCCCCCceEeCCeeeeeccC
Q psy11456 11 PLKRVLFIDDLLIIGRGKDLDLLIQRFQHTLDEIHLWAETNGTLFSTDPGKSVCIDFHRLRVARSPILSYNGTPLHFVTN 90 (574)
Q Consensus 11 ~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~W~~~~gl~~n~~~~Kt~~~~f~~~~~~~~~~~~l~~~~i~~~~~ 90 (574)
++.+..|.||+.|.+.+ +.++....|++.++.+ .++||.+| ++||+. ..+
T Consensus 177 ~~~v~vY~DDIlI~s~~-~~~eh~~~l~~v~~~l----~~~gL~l~--~~Kc~~-----------------------~~~ 226 (428)
T 2zd1_B 177 DIVIYQYMDDLYVGSDL-EIGQHRTKIEELRQHL----LRWGLTTP--DKKHQK-----------------------EPP 226 (428)
T ss_dssp TCEEEEETTEEEEEECS-CHHHHHHHHHHHHHHH----HHHHC-------------------------------------
T ss_pred CceEEEEecceEEecCC-cHHHHHHHHHHHHHHH----HHhCCccC--hhHccc-----------------------cce
Confidence 45689999997665421 3567766666666555 55679999 999962 123
Q ss_pred ceEEEEEEcCC
Q psy11456 91 NKFLGLLWDAK 101 (574)
Q Consensus 91 ~kyLGv~id~~ 101 (574)
++|||..++.+
T Consensus 227 ~~fLG~~i~~~ 237 (428)
T 2zd1_B 227 FLWMGYELHPD 237 (428)
T ss_dssp CTTCCEEECGG
T ss_pred EEEeccEecCC
Confidence 67888888764
No 21
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=89.95 E-value=0.24 Score=53.43 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=32.5
Q ss_pred CceEEEEecceEEEEecC-CHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCCcE
Q psy11456 11 PLKRVLFIDDLLIIGRGK-DLDLLIQRFQHTLDEIHLWAETNGTLFSTDPGKSV 63 (574)
Q Consensus 11 ~~~~~~yADD~~i~~~~~-~~~~~~~~lq~~l~~l~~W~~~~gl~~n~~~~Kt~ 63 (574)
++.+..|.||+.|.+ + +.++....| +.+.+-+.++||.+| ++||+
T Consensus 179 ~~~v~~Y~DDIli~s--~~~~~eh~~~l----~~v~~~l~~~gl~l~--~~Kc~ 224 (557)
T 2zd1_A 179 DIVIYQYMDDLYVGS--DLEIGQHRTKI----EELRQHLLRWGLTTP--DKKHQ 224 (557)
T ss_dssp TEEEEEETTEEEEEE--CSCHHHHHHHH----HHHHHHHHTTTCCCC--CSCCS
T ss_pred CceEEEEecCEEEec--CchHHHHHHHH----HHHHHHHHHcCCccC--hhhcC
Confidence 456899999976654 4 456665555 555566677889999 99985
No 22
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A
Probab=78.92 E-value=0.82 Score=47.63 Aligned_cols=44 Identities=11% Similarity=-0.068 Sum_probs=28.7
Q ss_pred CCceEEEEecceEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCCcEEEEe
Q psy11456 10 PPLKRVLFIDDLLIIGRGKDLDLLIQRFQHTLDEIHLWAETNGTLFSTDPGKSVCIDF 67 (574)
Q Consensus 10 ~~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~W~~~~gl~~n~~~~Kt~~~~f 67 (574)
.+...+=||||.++++.+.+ + .++.++.+..| +.+| |+||.+ .|
T Consensus 334 kd~~LVRYADDFVIi~~Ske--~----Aerfl~~Lkg~-----leLN--pEKTrI-nF 377 (596)
T 3kyl_A 334 KDAFIHRTVDDYFFCSPHPH--K----VYDFELLIKGV-----YQVN--PTKTRT-NL 377 (596)
T ss_dssp TTSEEEECSSEEEEEESCHH--H----HHHHHHHHHHH-----SCEE--EEEEEE-CC
T ss_pred cCceEEEEcCcEEEEECCHH--H----HHHHHHHhhCc-----ceEC--chhcee-ec
Confidence 35678889999999976433 2 23333334444 3999 999975 44
No 23
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=67.27 E-value=1.7 Score=45.52 Aligned_cols=61 Identities=23% Similarity=0.209 Sum_probs=44.9
Q ss_pred CceEEEEecceEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCCcEEEEeccCCCCCCCceEeCCeeeeeccC
Q psy11456 11 PLKRVLFIDDLLIIGRGKDLDLLIQRFQHTLDEIHLWAETNGTLFSTDPGKSVCIDFHRLRVARSPILSYNGTPLHFVTN 90 (574)
Q Consensus 11 ~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~W~~~~gl~~n~~~~Kt~~~~f~~~~~~~~~~~~l~~~~i~~~~~ 90 (574)
+..+..|+||+.| .+++.++....+++.++.+ .++||.+| ++||+.. +++
T Consensus 197 ~~~v~~YvDDili--~s~~~~e~~~~l~~v~~~l----~~~gl~l~--~~K~~f~----------------------~~~ 246 (455)
T 1rw3_A 197 DLILLQYVDDLLL--AATSELDCQQGTRALLQTL----GNLGYRAS--AKKAQIC----------------------QKQ 246 (455)
T ss_dssp TCEEEEETTEEEE--EESSHHHHHHHHHHHHHHH----HHHTCCBC--GGGCCCS----------------------BSS
T ss_pred CceEEEEcCCEEE--ecCCHHHHHHHHHHHHHHH----HHcCCccC--ccchhhh----------------------ccc
Confidence 5678999999544 5667777776666655555 55689999 9999632 357
Q ss_pred ceEEEEEEcCC
Q psy11456 91 NKFLGLLWDAK 101 (574)
Q Consensus 91 ~kyLGv~id~~ 101 (574)
++|||..++..
T Consensus 247 ~~fLG~~i~~~ 257 (455)
T 1rw3_A 247 VKYLGYLLKEG 257 (455)
T ss_dssp CEETTEEESSS
T ss_pred eeEeeeeccCC
Confidence 78999998865
No 24
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=45.49 E-value=8.8 Score=30.56 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=21.9
Q ss_pred CCcC-CCCcccccccc-cccccHHHhhh
Q psy11456 519 PICQ-CGAPLSVRHIL-SCHRHDHIRSS 544 (574)
Q Consensus 519 p~C~-Cg~~~t~~H~l-~Cp~~~~~R~~ 544 (574)
-.|+ ||+..+-.|.+ .||.......-
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~~~~~s 99 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVDKNYCS 99 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCGGGGCC
T ss_pred ccCCCCCCcCCcccceecCCCCCCccCc
Confidence 5699 99999999999 99998865433
No 25
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=37.75 E-value=47 Score=26.46 Aligned_cols=35 Identities=6% Similarity=0.067 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHhCC--cccCCCCCcEEEEeccC
Q psy11456 34 IQRFQHTLDEIHLWAETNGT--LFSTDPGKSVCIDFHRL 70 (574)
Q Consensus 34 ~~~lq~~l~~l~~W~~~~gl--~~n~~~~Kt~~~~f~~~ 70 (574)
...|.+-.+.++.+....-| .|| |+||+|+||+..
T Consensus 28 ~~rLr~~~~~LE~~Le~~~l~Gd~~--~~~TKVlH~~~N 64 (100)
T 1go4_E 28 RSRLEEEKRMLEAQLERRALQGDYD--QSRTKVLHMSLN 64 (100)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSCCC--TTTEEEEEESSC
T ss_pred HHHHHHHHHHHHHHHHHHhhccccC--CccCeeeeecCC
Confidence 35566777777778777666 788 999999999643
Done!