Query psy11456
Match_columns 574
No_of_seqs 254 out of 1820
Neff 8.6
Searched_HMMs 13730
Date Fri Aug 16 18:54:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11456.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11456hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mu2a1 c.55.3.1 (A:430-555) H 99.8 2.4E-21 1.7E-25 167.5 11.1 117 310-435 5-126 (126)
2 d1jl1a_ c.55.3.1 (A:) RNase H 99.8 3.5E-19 2.5E-23 159.2 7.2 124 312-439 2-143 (152)
3 d1rila_ c.55.3.1 (A:) RNase H 99.8 1.9E-19 1.4E-23 159.9 5.0 124 312-438 3-144 (147)
4 d1s1ta1 c.55.3.1 (A:430-539) H 99.5 5.3E-14 3.9E-18 116.9 11.2 100 310-418 6-110 (110)
5 d1zbfa1 c.55.3.1 (A:62-193) BH 99.0 1.2E-10 8.5E-15 98.1 5.5 111 314-428 6-131 (132)
6 d1ztwa1 e.8.1.2 (A:24-278) MML 95.3 0.011 8.1E-07 54.9 6.6 61 10-100 192-252 (255)
7 d2zd1b1 e.8.1.2 (B:5-428) HIV- 87.6 0.26 1.9E-05 48.5 5.4 61 11-101 173-233 (424)
8 d1mu2a2 e.8.1.2 (A:3-429) HIV- 84.4 0.62 4.5E-05 45.7 6.3 62 10-101 174-235 (427)
9 d2dsya1 d.304.1.2 (A:3-82) Hyp 35.8 28 0.0021 24.6 5.1 44 13-56 26-70 (80)
10 d2cs3a1 g.44.1.3 (A:8-87) Prot 20.9 26 0.0019 24.1 2.2 24 516-539 6-30 (80)
11 d1ak2a2 g.41.2.1 (A:147-176) M 20.8 27 0.002 19.8 2.0 19 508-526 7-26 (30)
No 1
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=99.84 E-value=2.4e-21 Score=167.55 Aligned_cols=117 Identities=21% Similarity=0.281 Sum_probs=86.9
Q ss_pred CCceEEEecCCCCCC-C-eeEEEEecce-eeeeeCCCCccchHHHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHhcC
Q psy11456 310 PNHTICFTDGSKSPD-V-TGCAFSIGDM-VQSTLLNPINSIFSAELIAIFLCLEAIIDSPSNQFLIVSDSRSALAALANV 386 (574)
Q Consensus 310 ~~~~~i~tDGS~~~~-~-~G~~~~~~~~-~~~~~l~~~~sv~~aE~~ai~~al~~~~~~~~~~~~I~~Ds~sa~~~l~~~ 386 (574)
++...+|||||.... + .|+|++.... .....++ ..|++.||+.||..||+. ...++.|+|||+.+++.+.+.
T Consensus 5 ~~~~t~YTDGS~~~n~~~~~~g~~~~~~~~~~~~~~-~~tnn~AEl~Ai~~al~~----~~~~i~I~tDS~~v~~~~~~~ 79 (126)
T d1mu2a1 5 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKLE-QTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQ 79 (126)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEES-SCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHTC
T ss_pred CCCcEEEEcCCCCCCCCcEEEEEEecCCCEEEEecC-CCcchHHHHHHHHHHhcc----CCcceEEEechHHHHHHHhcC
Confidence 456789999997653 3 4566665443 3334444 579999999999999875 467899999999999999986
Q ss_pred CCCc--HHHHHHHHHHHHhhhcCceEEEEEecCCCCCCcchhhhhhhcCCC
Q psy11456 387 RFSN--PLVTKVFSTWSYLKLCDKEVSFIWCPSHCGIRGNEIVDVAAKNPS 435 (574)
Q Consensus 387 ~~~~--~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~ 435 (574)
.... ..... .+..+. ....|.|.|||||+|++|||.||+||++|.
T Consensus 80 ~~~~~~~~~~~---~~~~~~-~~~~v~~~wV~gH~g~~gNe~AD~LA~~ai 126 (126)
T d1mu2a1 80 PTESESKIVNQ---IIEEMI-KKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 126 (126)
T ss_dssp CSEESCHHHHH---HHHHHH-HCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred CccccchHHHH---HHHHhh-hcceeEEEEEeCCCCCcchHHHHHHHHhhC
Confidence 5433 22222 222332 246899999999999999999999999874
No 2
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}
Probab=99.75 E-value=3.5e-19 Score=159.21 Aligned_cols=124 Identities=18% Similarity=0.222 Sum_probs=88.1
Q ss_pred ceEEEecCCCCCC--CeeEEEEec--cee--eeeeCCCCccchHHHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHhc
Q psy11456 312 HTICFTDGSKSPD--VTGCAFSIG--DMV--QSTLLNPINSIFSAELIAIFLCLEAIIDSPSNQFLIVSDSRSALAALAN 385 (574)
Q Consensus 312 ~~~i~tDGS~~~~--~~G~~~~~~--~~~--~~~~l~~~~sv~~aE~~ai~~al~~~~~~~~~~~~I~~Ds~sa~~~l~~ 385 (574)
.+.||||||...+ ..|+|+|.. +.. .+... ...|++.||+.|+..||+++. ....+.|++||+.++..+..
T Consensus 2 ~I~IYtDGS~~~N~g~aG~G~vi~~~~~~~~~~~~~-~~~tnn~aE~~Ai~~Al~~~~--~~~~i~i~tds~~~i~~~~~ 78 (152)
T d1jl1a_ 2 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALK--EHAEVILSTDSQYVRQGITQ 78 (152)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCC--SCCEEEEEECCHHHHHHHHT
T ss_pred EEEEEEeCCCCCCCCcEEEEEEEEECCeEEEecccc-CcccHHHHHHhhhhhhhhhhc--ccceEEEeecceeeEEcccc
Confidence 3789999998764 378887753 222 22222 456889999999999998765 46678999999999988865
Q ss_pred CCC--------C---cHH-HHHHHHHHHHhhhcCceEEEEEecCCCCCCcchhhhhhhcCCCCCCC
Q psy11456 386 VRF--------S---NPL-VTKVFSTWSYLKLCDKEVSFIWCPSHCGIRGNEIVDVAAKNPSDLAP 439 (574)
Q Consensus 386 ~~~--------~---~~~-~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~~~~ 439 (574)
... . .++ -.+....+..+. ....|.|+|||||+|++|||.||+|||+|+...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~-~~~~V~~~wV~gH~g~~gNe~AD~LAk~aa~~~~ 143 (152)
T d1jl1a_ 79 WIHNWKKRGWKTADKKPVKNVDLWQRLDAAL-GQHQIKWEWVKGHAGHPENERADELARAAAMNPT 143 (152)
T ss_dssp THHHHHHTTTBCTTSCBCTTHHHHHHHHHHT-TTCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCC
T ss_pred hhhHhHhccchhcccCeeecHHHHHHHHHHh-hcceeEEEEecccCCCccHHHHHHHHHHHHhCCC
Confidence 311 0 011 111222232332 3568999999999999999999999999998733
No 3
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}
Probab=99.75 E-value=1.9e-19 Score=159.93 Aligned_cols=124 Identities=19% Similarity=0.150 Sum_probs=87.5
Q ss_pred ceEEEecCCCCCC-C-eeEEEEecc---eeeeeeCCCCccchHHHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHhcC
Q psy11456 312 HTICFTDGSKSPD-V-TGCAFSIGD---MVQSTLLNPINSIFSAELIAIFLCLEAIIDSPSNQFLIVSDSRSALAALANV 386 (574)
Q Consensus 312 ~~~i~tDGS~~~~-~-~G~~~~~~~---~~~~~~l~~~~sv~~aE~~ai~~al~~~~~~~~~~~~I~~Ds~sa~~~l~~~ 386 (574)
.+.||||||...+ + .|+|+|... ...........|++.||+.|+..||+++. ....+.|++||+.++..+...
T Consensus 3 ~i~iytDGs~~~N~g~~G~g~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~--~~~~i~i~tds~~~~~~~~~~ 80 (147)
T d1rila_ 3 RVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALK--EPCEVDLYTDSHYLKKAFTEG 80 (147)
T ss_dssp CCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCC--SCCEEEEECCCHHHHHHHHSS
T ss_pred EEEEEEccCCCCCCCccEEEEEEEECCcceEEecccccccHHHHHHHHHHHHhhhcc--CCceEEEecchhhhhcccccc
Confidence 5789999998864 3 677876532 11111122346899999999999998764 467899999999999988653
Q ss_pred CC----------C--cHH-HHHHHHHHHHhhhcCceEEEEEecCCCCCCcchhhhhhhcCCCCCC
Q psy11456 387 RF----------S--NPL-VTKVFSTWSYLKLCDKEVSFIWCPSHCGIRGNEIVDVAAKNPSDLA 438 (574)
Q Consensus 387 ~~----------~--~~~-~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~~~ 438 (574)
.. . .++ -.++...+..+. ....|.|.|||||+|++|||.||+|||+|+...
T Consensus 81 ~~~~~~~~~~~~~~~~~v~n~dL~~~l~~~~-~~~~v~~~wVkgHsg~~gNe~AD~LAk~aa~~~ 144 (147)
T d1rila_ 81 WLEGWRKRGWRTAEGKPVKNRDLWEALLLAM-APHRVRFHFVKGHTGHPENERVDREARRQAQSQ 144 (147)
T ss_dssp HHHHHHHTTSBCTTSSBCTTHHHHHHHHHHH-TTSEEECCCCCGGGSCTHHHHHHHHHHHHHTSS
T ss_pred chhhhhhccccccccccchhHHHHHHHHHHh-hhcccceEEccCCCCCcchHHHHHHHHHHHHHh
Confidence 11 0 111 112222233332 356899999999999999999999999998774
No 4
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=99.50 E-value=5.3e-14 Score=116.89 Aligned_cols=100 Identities=21% Similarity=0.313 Sum_probs=72.2
Q ss_pred CCceEEEecCCCCCC-C-eeEEEEecce-eeeeeCCCCccchHHHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHhcC
Q psy11456 310 PNHTICFTDGSKSPD-V-TGCAFSIGDM-VQSTLLNPINSIFSAELIAIFLCLEAIIDSPSNQFLIVSDSRSALAALANV 386 (574)
Q Consensus 310 ~~~~~i~tDGS~~~~-~-~G~~~~~~~~-~~~~~l~~~~sv~~aE~~ai~~al~~~~~~~~~~~~I~~Ds~sa~~~l~~~ 386 (574)
++...+|||||...+ + .|+|++..+. .....++ .+|++.||+.||..||+. ...++.|+|||+.++.++...
T Consensus 6 ~~~~t~ytDGs~~~n~~~g~~g~~~~~~~~~~~~~~-~~TNn~aEl~Avi~aL~~----~~~~v~I~TDS~yvi~~i~~~ 80 (110)
T d1s1ta1 6 VGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLT-DTTNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQ 80 (110)
T ss_dssp TTSEEEEEEEEEETTTTEEEEEEEETTSCEEEEEES-SCCHHHHHHHHHHHHHHH----SCSEEEEEECCHHHHHHHHHC
T ss_pred CCCcEEEEeCCCCCCCCCcEEEEEEecCCeEEEecc-cCcHHHHHHHHHHHHHHh----CCCeEEEEEehHHHHHHHhcC
Confidence 456789999996543 3 4555665442 3344444 579999999999999975 456899999999999999986
Q ss_pred CCCc--HHHHHHHHHHHHhhhcCceEEEEEecCC
Q psy11456 387 RFSN--PLVTKVFSTWSYLKLCDKEVSFIWCPSH 418 (574)
Q Consensus 387 ~~~~--~~~~~i~~~~~~l~~~~~~v~~~Wvp~H 418 (574)
.... ...++|.+.+ .. ...|.+.|||||
T Consensus 81 ~~~~~~~l~~~il~~l---~~-~~~v~i~WVpgH 110 (110)
T d1s1ta1 81 PDQSESELVNQIIEQL---IK-KEKVYLAWVPAH 110 (110)
T ss_dssp CSEESCHHHHHHHHHH---HH-CSEEEEEECCSS
T ss_pred ccccchHHHHHHHHHH---hc-CCceEEEEeCCC
Confidence 5532 4555554433 22 468999999999
No 5
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]}
Probab=99.01 E-value=1.2e-10 Score=98.10 Aligned_cols=111 Identities=14% Similarity=0.047 Sum_probs=81.0
Q ss_pred EEEecCCCCCC--CeeEEEEecce----eeeeeCCCCccchHHHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHhcCC
Q psy11456 314 ICFTDGSKSPD--VTGCAFSIGDM----VQSTLLNPINSIFSAELIAIFLCLEAIIDSPSNQFLIVSDSRSALAALANVR 387 (574)
Q Consensus 314 ~i~tDGS~~~~--~~G~~~~~~~~----~~~~~l~~~~sv~~aE~~ai~~al~~~~~~~~~~~~I~~Ds~sa~~~l~~~~ 387 (574)
-||||||...+ ..|+|+|.... ..+..+ ...|...||+.|+..||+.+.+.. .++.|+|||+-++..+.+-.
T Consensus 6 sIy~DGa~~GNPGp~g~g~v~~~~~~~~~~sg~~-~~~TNN~aEl~A~i~aL~~~~~~~-~~i~I~tDS~yvi~wv~~~~ 83 (132)
T d1zbfa1 6 SLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKERN-SRKPIYSNSQTAIKWVKDKK 83 (132)
T ss_dssp SEEEEEEECSSSEEEEEEEEETTTCCEEEECCCE-EEECHHHHHHHHHHHHHHHHHHTT-CCCCEEESCHHHHHHHHHTC
T ss_pred eEEEeecCCCCCchheEEEEEEcCCEEEEEEcCc-CccchHHHHHHHHHHHHHHhhcCC-ceEEEEeccHHHHHHHHhCc
Confidence 48999998864 47888776432 122223 467899999999999999998754 67999999999999987643
Q ss_pred CC---------cHHHHHHHHHHHHhhhcCceEEEEEecCCCCCCcchhhh
Q psy11456 388 FS---------NPLVTKVFSTWSYLKLCDKEVSFIWCPSHCGIRGNEIVD 428 (574)
Q Consensus 388 ~~---------~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD 428 (574)
-. ..+.+.|.++...++. ..+.+.|+..|+.--||..||
T Consensus 84 ~kt~~~~~vkN~~l~~~i~~a~~~lk~--h~~~~~~~KW~~~~wG~i~AD 131 (132)
T d1zbfa1 84 AKSTLVRNEETALIWKLVDEAEEWLNT--HTYETPILKWQTDKWGEIKAD 131 (132)
T ss_dssp CCCCCCCSTTTHHHHHHHHHHHHHHHH--CCCCCCEEECCHHHHCSCTTC
T ss_pred eecCcCCCcccHHHHHHHHHHHHHHHh--CCcCceeEEecCcccccCCCC
Confidence 11 1234444444444543 457888999999999999998
No 6
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=95.34 E-value=0.011 Score=54.85 Aligned_cols=61 Identities=25% Similarity=0.257 Sum_probs=44.5
Q ss_pred CCceEEEEecceEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCCcEEEEeccCCCCCCCceEeCCeeeeecc
Q psy11456 10 PPLKRVLFIDDLLIIGRGKDLDLLIQRFQHTLDEIHLWAETNGTLFSTDPGKSVCIDFHRLRVARSPILSYNGTPLHFVT 89 (574)
Q Consensus 10 ~~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~W~~~~gl~~n~~~~Kt~~~~f~~~~~~~~~~~~l~~~~i~~~~ 89 (574)
+++.+..|.||+.+ .+.+.++....++..++.+ +++|+.+| ++||+.. .+
T Consensus 192 ~~~~~~~Y~DDili--~s~t~~eh~~~l~~vl~~l----~~~gl~~~--~~K~~~~----------------------~~ 241 (255)
T d1ztwa1 192 PDLILLQYVDDLLL--AATSELDCQQGTRALLQTL----GNLGYRAS--AKKAQIC----------------------QK 241 (255)
T ss_dssp TTCEEEEETTEEEE--EESSHHHHHHHHHHHHHHH----HHHTCCBC--TTTCEEE----------------------ES
T ss_pred CceEEEEEeeeeec--cCCCHHHHHHHHHHHHHHH----HHCcCEeC--HHHeECC----------------------CC
Confidence 35678899999555 5667777766666555555 67789999 9999752 24
Q ss_pred CceEEEEEEcC
Q psy11456 90 NNKFLGLLWDA 100 (574)
Q Consensus 90 ~~kyLGv~id~ 100 (574)
+++|||..++.
T Consensus 242 ~v~fLG~~I~~ 252 (255)
T d1ztwa1 242 QVKYLGYLLKE 252 (255)
T ss_dssp EEEETTEEEET
T ss_pred CcEEeEEEEeC
Confidence 67889988865
No 7
>d2zd1b1 e.8.1.2 (B:5-428) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=87.62 E-value=0.26 Score=48.54 Aligned_cols=61 Identities=10% Similarity=0.082 Sum_probs=34.0
Q ss_pred CceEEEEecceEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCCcEEEEeccCCCCCCCceEeCCeeeeeccC
Q psy11456 11 PLKRVLFIDDLLIIGRGKDLDLLIQRFQHTLDEIHLWAETNGTLFSTDPGKSVCIDFHRLRVARSPILSYNGTPLHFVTN 90 (574)
Q Consensus 11 ~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~W~~~~gl~~n~~~~Kt~~~~f~~~~~~~~~~~~l~~~~i~~~~~ 90 (574)
++-+..|.||+.|. +..+.++....+++.++.+. ++|+.++ .+|+. ...+
T Consensus 173 ~~~i~~Y~DDIlI~-S~~~~eeH~~~l~~vl~~L~----~~gl~l~--~Kk~f-----------------------~~~~ 222 (424)
T d2zd1b1 173 DIVIYQYMDDLYVG-SDLEIGQHRTKIEELRQHLL----RWGLTTP--DKKHQ-----------------------KEPP 222 (424)
T ss_dssp TCEEEEETTEEEEE-ECSCHHHHHHHHHHHHHHHH----HHHC-------------------------------------
T ss_pred ceeEEeccceEEEe-cCchhHHHHHHHHHHHHHHH----HhCCccc--hhhhh-----------------------hhcc
Confidence 45688999996653 33356667666766666555 5559888 76642 1245
Q ss_pred ceEEEEEEcCC
Q psy11456 91 NKFLGLLWDAK 101 (574)
Q Consensus 91 ~kyLGv~id~~ 101 (574)
++|||..++..
T Consensus 223 v~~LG~~is~~ 233 (424)
T d2zd1b1 223 FLWMGYELHPD 233 (424)
T ss_dssp CTTCCEEECGG
T ss_pred cccceeeecCC
Confidence 77899888764
No 8
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=84.44 E-value=0.62 Score=45.70 Aligned_cols=62 Identities=11% Similarity=0.004 Sum_probs=40.3
Q ss_pred CCceEEEEecceEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCCcEEEEeccCCCCCCCceEeCCeeeeecc
Q psy11456 10 PPLKRVLFIDDLLIIGRGKDLDLLIQRFQHTLDEIHLWAETNGTLFSTDPGKSVCIDFHRLRVARSPILSYNGTPLHFVT 89 (574)
Q Consensus 10 ~~~~~~~yADD~~i~~~~~~~~~~~~~lq~~l~~l~~W~~~~gl~~n~~~~Kt~~~~f~~~~~~~~~~~~l~~~~i~~~~ 89 (574)
+++.+..|.||+.|.+. .+.++....+++ +.+-..++|+.++ ++|++ ...
T Consensus 174 ~~~~i~~Y~DDIlI~S~-~~~~eH~~~v~~----l~~~l~~~g~~~~--~kK~~-----------------------~~~ 223 (427)
T d1mu2a2 174 KDVIIIQYMDDILIASD-RTDLEHDRVVLQ----LKELLNGLGFSTP--DEKFQ-----------------------KDP 223 (427)
T ss_dssp TTSEEEEETTEEEEEEC-SCHHHHHHHHHH----HHHHHHHTTCBCC--STTEE-----------------------CSS
T ss_pred ccceeEeeeeeeEeecc-chhHHHHHHHHH----HHHHHHHhcchhh--hhhhh-----------------------cee
Confidence 35678999999777643 343455554544 4445567789987 77752 124
Q ss_pred CceEEEEEEcCC
Q psy11456 90 NNKFLGLLWDAK 101 (574)
Q Consensus 90 ~~kyLGv~id~~ 101 (574)
+++|||..++..
T Consensus 224 ~v~~LG~~i~~~ 235 (427)
T d1mu2a2 224 PYHWMGYELWPT 235 (427)
T ss_dssp SEEETTEEECSS
T ss_pred eeeeeeeEecCC
Confidence 578899888764
No 9
>d2dsya1 d.304.1.2 (A:3-82) Hypothetical protein TTHA0281 {Thermus thermophilus [TaxId: 274]}
Probab=35.80 E-value=28 Score=24.63 Aligned_cols=44 Identities=23% Similarity=0.190 Sum_probs=39.3
Q ss_pred eEEEEecceE-EEEecCCHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy11456 13 KRVLFIDDLL-IIGRGKDLDLLIQRFQHTLDEIHLWAETNGTLFS 56 (574)
Q Consensus 13 ~~~~yADD~~-i~~~~~~~~~~~~~lq~~l~~l~~W~~~~gl~~n 56 (574)
...++.-|+- +++.|.+.+++...++++++....+..+.|..+=
T Consensus 26 ~y~~~~PDlpgc~t~GdT~eEA~~~a~eAl~~~l~~~~e~g~~iP 70 (80)
T d2dsya1 26 PYYGEIPDLPGVWATGKSLKECEANLQAALEDWLLFLLSRGETPP 70 (80)
T ss_dssp CEEEECTTSTTCEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred EEEEEeCCCCcEEecCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 5778888885 8999999999999999999999999999998774
No 10
>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.87 E-value=26 Score=24.07 Aligned_cols=24 Identities=29% Similarity=0.628 Sum_probs=18.4
Q ss_pred CCCCCcC-CCCcccccccccccccH
Q psy11456 516 SAPPICQ-CGAPLSVRHILSCHRHD 539 (574)
Q Consensus 516 ~~~p~C~-Cg~~~t~~H~l~Cp~~~ 539 (574)
..+..|. |.+...-.|++.||.-.
T Consensus 6 ~~~l~CtlC~erLEdtHFVQCPsv~ 30 (80)
T d2cs3a1 6 SGPLCCTICHERLEDTHFVQCPSVP 30 (80)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCS
T ss_pred CCceeeeeehhhhcCCceEeCCCCc
Confidence 3456788 99887778999999653
No 11
>d1ak2a2 g.41.2.1 (A:147-176) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=20.84 E-value=27 Score=19.76 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=13.1
Q ss_pred ccccccCCCCCCCcC-CCCc
Q psy11456 508 THNHLFTKSAPPICQ-CGAP 526 (574)
Q Consensus 508 ~h~~~~~~~~~p~C~-Cg~~ 526 (574)
+|..+........|+ ||++
T Consensus 7 Yhv~f~PPk~~g~cD~cg~~ 26 (30)
T d1ak2a2 7 YHEEFNPPKEPMKDDITGEP 26 (30)
T ss_dssp EBTTTBCCSSTTBCTTTCCB
T ss_pred ccccccCCCCCCccCCCCCC
Confidence 455555556677899 9975
Done!