RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11456
         (574 letters)



>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
           transcriptase) {Human immunodeficiency virus type 2
           [TaxId: 11709]}
          Length = 126

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 8/125 (6%)

Query: 310 PNHTICFTDGSKS--PDVTGCAFSIGDMVQSTLLNPINSIFSAELIAIFLCLEAIIDSPS 367
           P     +TDGS +         +               +   AEL A  +     +    
Sbjct: 5   PGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKLEQTTNQQAELEAFAMA----LTDSG 60

Query: 368 NQFLIVSDSRSALAALANVRFSNPLVTKVFSTWSYLKLCDKEVSFIWCPSHCGIRGNEIV 427
            +  I+ DS+  +  +A+    +   +K+ +      +  + +   W P+H GI GN+ V
Sbjct: 61  PKVNIIVDSQYVMGIVASQPTESE--SKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEV 118

Query: 428 DVAAK 432
           D    
Sbjct: 119 DHLVS 123


>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
           562]}
          Length = 152

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 18/138 (13%)

Query: 316 FTDGSKS--PDVTGCAFSI---GDMVQSTLLNPINSIFSAELIAIFLCLEA------IID 364
           FT GS    P   G    +   G     +      +    EL+A  + LEA      +I 
Sbjct: 6   FTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHAEVIL 65

Query: 365 SPSNQFLIVSDSRSALAALANVRFS---NPLVTKVFSTWSYLKLCDKEVSFIWCPSHCGI 421
           S  +Q++    ++           +    P+            L   ++ + W   H G 
Sbjct: 66  STDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGH 125

Query: 422 RGNEIVD----VAAKNPS 435
             NE  D     AA NP+
Sbjct: 126 PENERADELARAAAMNPT 143


>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
           [TaxId: 274]}
          Length = 147

 Score = 34.5 bits (78), Expect = 0.013
 Identities = 28/133 (21%), Positives = 39/133 (29%), Gaps = 15/133 (11%)

Query: 316 FTDGSKS--PDVTGCAFSIGDMVQSTLLN---PINSIFSAELIAIFLCLEA--------I 362
           FTDG+    P   G A  +       LL+      +    EL A    L+A        +
Sbjct: 7   FTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEPCEVDL 66

Query: 363 IDSPSNQFLIVSDSRSALAALANVRFSNPLVTKVFSTWSYLKLCDKE--VSFIWCPSHCG 420
                      ++           R +     K    W  L L      V F +   H G
Sbjct: 67  YTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTG 126

Query: 421 IRGNEIVDVAAKN 433
              NE VD  A+ 
Sbjct: 127 HPENERVDREARR 139


>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken
          (Gallus gallus) [TaxId: 9031]}
          Length = 110

 Score = 30.0 bits (67), Expect = 0.28
 Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 34 IQRFQHTLDEIHLW-AETNGTLFSTDPGKSV 63
           Q F   + +   W +E    L S D GK +
Sbjct: 4  QQNFNTGIKDFDFWLSEVEALLASEDYGKDL 34


>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId:
          7242]}
          Length = 107

 Score = 28.8 bits (64), Expect = 0.53
 Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 3/35 (8%)

Query: 30 LDLLIQRFQHTLDEIHLW-AETNGTLFSTDPGKSV 63
          LDL  Q +    +    W +     L + D   + 
Sbjct: 3  LDL--QLYMRDCELAESWMSAREAFLNADDDANAG 35


>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 106

 Score = 27.4 bits (60), Expect = 1.7
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 35 QRFQHTLDEIHLW-AETNGTLFSTDPGKSV 63
          Q F   LD+   W + T   + S D  +S+
Sbjct: 2  QAFLQDLDDFQAWLSITQKAVASEDMPESL 31


>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase subunit
           beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 119

 Score = 26.5 bits (59), Expect = 4.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 286 EGKKSDTAPVVFQKMFHEVI 305
           EG K+D  P  F+ + H VI
Sbjct: 1   EGVKTDFGPPYFRDLLHPVI 20


>d2ilni1 g.3.13.1 (I:8-60) Bowman-Birk inhibitor, BBI {Snail medic
           (Medicago scutellata) [TaxId: 36901]}
          Length = 53

 Score = 24.4 bits (53), Expect = 6.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query: 514 TKSAPPICQC 523
           T+S PP CQC
Sbjct: 8   TRSIPPQCQC 17


>d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis
           familiaris) [TaxId: 9615]}
          Length = 190

 Score = 26.4 bits (57), Expect = 7.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 300 MFHEVINIKYPNHTICFTD 318
           MFH++   K+ N +I F D
Sbjct: 3   MFHKIYIQKHDNVSILFAD 21


>d2g81i1 g.3.13.1 (I:17-72) Bowman-Birk inhibitor, BBI {Cowpea
           (Vigna unguiculata) [TaxId: 3917]}
          Length = 56

 Score = 24.4 bits (53), Expect = 7.8
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 4/23 (17%)

Query: 514 TKSAPPICQCGAPLSVRHILSCH 536
           TKS PP C+C     VR + SCH
Sbjct: 9   TKSIPPQCRC---SDVR-LNSCH 27


>d1tdha2 b.113.1.1 (A:2-131) Endonuclease VIII-like 1 (NEIL1) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 130

 Score = 25.8 bits (56), Expect = 8.0
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 201 LRRSK-LMLNYVSKISASPFNPAQKVLFHQDMSGTIFTVNK---PKPLYVRFR 249
             R K L L       A P      ++F   MSG+   V +   P+  ++RF 
Sbjct: 49  SARGKELRLILSPLPGAQPQQEPLALVFRFGMSGSFQLVPREELPRHAHLRFY 101


>d1pbia_ g.3.13.1 (A:) Bowman-Birk inhibitor, BBI {Winter pea (Pisum
           sativum) [TaxId: 3888]}
          Length = 68

 Score = 24.8 bits (54), Expect = 8.2
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 5/23 (21%)

Query: 514 TKSAPPICQCGAPLSVRHILSCH 536
           TKS PP C+C   + V    +CH
Sbjct: 11  TKSNPPTCRC---VDVGE--TCH 28


>d1df9c_ g.3.13.1 (C:) Bowman-Birk inhibitor, BBI {Mung bean (Vigna
           radiata) [TaxId: 157791]}
          Length = 72

 Score = 24.9 bits (54), Expect = 8.7
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 4/24 (16%)

Query: 514 TKSAPPICQCGAPLSVRHILSCHR 537
           TKS PP C C    ++R + SCH 
Sbjct: 19  TKSIPPQCHC---ANIR-LNSCHS 38


>d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 392

 Score = 26.5 bits (58), Expect = 9.2
 Identities = 11/81 (13%), Positives = 21/81 (25%), Gaps = 3/81 (3%)

Query: 406 CDKEVSFIWCPSHCGIRGNEIVDVAAKNPSDL-APSKLCTPEDLKPFIASLMK--TEWQN 462
            D    F        I     + V       +    +    + L    + L K    +  
Sbjct: 146 GDCSKGFFLVSLLVEIAAASAIKVIPTVFKAMQMQERDTLLKALLEIASCLEKALQVFHQ 205

Query: 463 QWNNVPSTNKLKSIRPYIKHW 483
             ++V        +R Y+  W
Sbjct: 206 IHDHVNPKAFFSVLRIYLSGW 226


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0754    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,219,503
Number of extensions: 104730
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 19
Length of query: 574
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 484
Effective length of database: 1,171,896
Effective search space: 567197664
Effective search space used: 567197664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (24.9 bits)