BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11457
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TXD|A Chain A, Crystal Structure Of The Dh/ph Domains Of
Leukemia-associated Rhogef
pdb|1X86|A Chain A, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|C Chain C, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|E Chain E, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|G Chain G, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
Length = 385
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 135/316 (42%), Positives = 183/316 (57%), Gaps = 35/316 (11%)
Query: 1 MLDIHSTFNNSMKL--KRKESPVVGDVGDLLLDMFDGXXXXXXXXXXXTFCSRQQIALES 58
+L +H N MK KR E+ V+ +G+ LL F G TFCS Q ALE
Sbjct: 75 ILQLHIGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAATFCSNQPFALEM 134
Query: 59 LRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENE 118
++ R++KDSR F+ +AE NPLCRRLQLKDIIPT M RLTKYPLL N+AKYT + E
Sbjct: 135 IKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYT-EWPTE 193
Query: 119 LTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLT 178
KVK+A D ++ILN+VNQAVKEAE++ RL + Q+RLD + + + P V E RNLDLT
Sbjct: 194 REKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLDTSSLKLSEYPNVEELRNLDLT 253
Query: 179 RHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVXXXXX 238
+ K+I+EG L ++ R K I+LY LLLEDI+VLLQKQDD S +
Sbjct: 254 KRKMIHEGPLVWKV--NRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILAST----- 306
Query: 239 XXXXXXXRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQ 298
+D++ P +V ++R +V D AL++++ S
Sbjct: 307 ------------ADSKHTFSPVIKLSTV---LVR----------QVATDNKALFVISMSD 341
Query: 299 HSAQIYDLVASSASER 314
+ AQIY+LVA + SE+
Sbjct: 342 NGAQIYELVAQTVSEK 357
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 259 PPDWTKSVPEDILRSLSPREKKRQEVIND 287
PP+W + V ++L L P E KRQEVIN+
Sbjct: 3 PPNWQQLVSREVLLGLKPCEIKRQEVINE 31
>pdb|3P6A|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
pdb|3P6A|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
Length = 377
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 186/316 (58%), Gaps = 34/316 (10%)
Query: 1 MLDIHSTFNNSMKLKRKESP-VVGDVGDLLLDMFDGXXXXXXXXXXXTFCSRQQIALESL 59
++++HS F + + +R+ES ++ ++GD+LL FDG FCSRQ ALE L
Sbjct: 78 LIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQL 137
Query: 60 RERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENEL 119
+ ++RKD R AF+ EAE P CRRLQLKD+IPT M RLTKYPLL ++ + T + E
Sbjct: 138 KAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNT-EEPTER 196
Query: 120 TKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTR 179
KV+ A + +EIL++VNQAV++ ED RL + Q+RLD + + +P+++E++NLD+T+
Sbjct: 197 EKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDITK 256
Query: 180 HKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVXXXXXX 239
KL++EG L R+ T+ K +E++VLLL+D+++LLQ+QD+ S S +
Sbjct: 257 KKLVHEGPLTWRV--TKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPT------ 308
Query: 240 XXXXXXRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQH 299
PD K++ +LR S + EV D A Y++ T
Sbjct: 309 -----------------PD----GKTMLRPVLRLTSAMTR---EVATDHKAFYVLFTWDQ 344
Query: 300 SAQIYDLVASSASERK 315
AQIY+LVA + SERK
Sbjct: 345 EAQIYELVAQTVSERK 360
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 259 PPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQH 299
PP W + VP D L SL + KRQEVI++ LV + H
Sbjct: 6 PPGWEELVPPDTLHSLPKSQVKRQEVISE----LLVTEAAH 42
>pdb|3ODO|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
pdb|3ODO|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
Length = 375
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 186/316 (58%), Gaps = 34/316 (10%)
Query: 1 MLDIHSTFNNSMKLKRKESP-VVGDVGDLLLDMFDGXXXXXXXXXXXTFCSRQQIALESL 59
++++HS F + + +R+ES ++ ++GD+LL FDG FCSRQ ALE L
Sbjct: 76 LIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQL 135
Query: 60 RERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENEL 119
+ ++RKD R AF+ EAE P CRRLQLKD+IPT M RLTKYPLL ++ + T + E
Sbjct: 136 KAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNT-EEPTER 194
Query: 120 TKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTR 179
KV+ A + +EIL++VNQAV++ ED RL + Q+RLD + + +P+++E++NLD+T+
Sbjct: 195 EKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDITK 254
Query: 180 HKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVXXXXXX 239
KL++EG L R+ T+ K +E++VLLL+D+++LLQ+QD+ S S +
Sbjct: 255 KKLVHEGPLTWRV--TKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPT------ 306
Query: 240 XXXXXXRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQH 299
PD K++ +LR S + EV D A Y++ T
Sbjct: 307 -----------------PD----GKTMLRPVLRLTSAMTR---EVATDHKAFYVLFTWDQ 342
Query: 300 SAQIYDLVASSASERK 315
AQIY+LVA + SERK
Sbjct: 343 EAQIYELVAQTVSERK 358
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 259 PPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQH 299
PP W + VP D L SL + KRQEVI++ LV + H
Sbjct: 4 PPGWRELVPPDTLHSLPKSQVKRQEVISE----LLVTEAAH 40
>pdb|3ODX|A Chain A, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
pdb|3ODX|B Chain B, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
Length = 417
Score = 187 bits (476), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 186/316 (58%), Gaps = 34/316 (10%)
Query: 1 MLDIHSTFNNSMKLKRKESP-VVGDVGDLLLDMFDGXXXXXXXXXXXTFCSRQQIALESL 59
++++HS F + + +R+ES ++ ++GD+LL FDG FCSRQ ALE L
Sbjct: 118 LIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQL 177
Query: 60 RERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENEL 119
+ ++RKD R AF+ EAE P CRRLQLKD+IPT M RLTKYPLL ++ + T + E
Sbjct: 178 KAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNT-EEPTER 236
Query: 120 TKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTR 179
KV+ A + +EIL++VNQAV++ ED RL + Q+RLD + + +P+++E++NLD+T+
Sbjct: 237 EKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDITK 296
Query: 180 HKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVXXXXXX 239
KL++EG L R+ T+ K +E++VLLL+D+++LLQ+QD+ S S +
Sbjct: 297 KKLVHEGPLTWRV--TKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPT------ 348
Query: 240 XXXXXXRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQH 299
PD K++ +LR S + EV D A Y++ T
Sbjct: 349 -----------------PD----GKTMLRPVLRLTSAMTR---EVATDHKAFYVLFTWDQ 384
Query: 300 SAQIYDLVASSASERK 315
AQIY+LVA + SERK
Sbjct: 385 EAQIYELVAQTVSERK 400
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 248 PWDSDTEAEPD-PPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQH 299
P S E EP+ PP W + VP D L SL + KRQEVI++ LV + H
Sbjct: 34 PGRSGLELEPEEPPGWRELVPPDTLHSLPKSQVKRQEVISE----LLVTEAAH 82
>pdb|3ODW|A Chain A, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
pdb|3ODW|B Chain B, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
Length = 536
Score = 187 bits (474), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 186/316 (58%), Gaps = 34/316 (10%)
Query: 1 MLDIHSTFNNSMKLKRKESP-VVGDVGDLLLDMFDGXXXXXXXXXXXTFCSRQQIALESL 59
++++HS F + + +R+ES ++ ++GD+LL FDG FCSRQ ALE L
Sbjct: 231 LIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQL 290
Query: 60 RERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENEL 119
+ ++RKD R AF+ EAE P CRRLQLKD+IPT M RLTKYPLL ++ + T + E
Sbjct: 291 KAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNT-EEPTER 349
Query: 120 TKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTR 179
KV+ A + +EIL++VNQAV++ ED RL + Q+RLD + + +P+++E++NLD+T+
Sbjct: 350 EKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDITK 409
Query: 180 HKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVXXXXXX 239
KL++EG L R+ T+ K +E++VLLL+D+++LLQ+QD+ S S +
Sbjct: 410 KKLVHEGPLTWRV--TKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPT------ 461
Query: 240 XXXXXXRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQH 299
PD K++ +LR S + EV D A Y++ T
Sbjct: 462 -----------------PD----GKTMLRPVLRLTSAMTR---EVATDHKAFYVLFTWDQ 497
Query: 300 SAQIYDLVASSASERK 315
AQIY+LVA + SERK
Sbjct: 498 EAQIYELVAQTVSERK 513
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 248 PWDSDTEAEPD-PPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQH 299
P S E EP+ PP W + VP D L SL + KRQEVI++ LV + H
Sbjct: 147 PGRSGLELEPEEPPGWRELVPPDTLHSLPKSQVKRQEVISE----LLVTEAAH 195
>pdb|1XCG|A Chain A, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|E Chain E, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
Length = 368
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 187/315 (59%), Gaps = 33/315 (10%)
Query: 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGXXXXXXXXXXXTFCSRQQIALESLR 60
+++IH+++ +MK R+E P++ ++ DL+L FDG FCS Q IALE ++
Sbjct: 72 LIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIK 131
Query: 61 ERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELT 120
++RK+SR F+ EAE +P CRRLQL+D+I + M RLTKYPLL ++ K+T +E
Sbjct: 132 TKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHE 191
Query: 121 KVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTRH 180
K+ RA D+ +EIL YVN+AVK+ E++HRL QKRLD T E+ NPL E+++LDLT
Sbjct: 192 KLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTR 251
Query: 181 KLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVXXXXXXX 240
K+I+EG L RI ++ K ++L+VLLLED++VLLQKQD+ S +
Sbjct: 252 KMIHEGPLTWRI--SKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVG-------- 301
Query: 241 XXXXXRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQHS 300
SD++ P +V ++RS V D+ A +++ TS+
Sbjct: 302 ---------SSDSKQTFSPVLKLNAV---LIRS----------VATDKRAFFIICTSKLG 339
Query: 301 -AQIYDLVASSASER 314
QIY+LVA ++S++
Sbjct: 340 PPQIYELVALTSSDK 354
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 261 DWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQ-HSAQIYDLV 307
+W +V +D++ L+ RE RQEVIN+ L++ S + ++ DL+
Sbjct: 2 NWQHTVGKDVVAGLTQREIDRQEVINE---LFVTEASHLRTLRVLDLI 46
>pdb|3KZ1|A Chain A, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|B Chain B, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 383
Score = 184 bits (468), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 187/315 (59%), Gaps = 33/315 (10%)
Query: 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGXXXXXXXXXXXTFCSRQQIALESLR 60
+++IH+++ +MK R+E P++ ++ DL+L FDG FCS Q IALE ++
Sbjct: 77 LIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIK 136
Query: 61 ERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELT 120
++RK+SR F+ EAE +P CRRLQL+D+I + M RLTKYPLL ++ K+T +E
Sbjct: 137 TKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHE 196
Query: 121 KVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTRH 180
K+ RA D+ +EIL YVN+AVK+ E++HRL QKRLD T E+ NPL E+++LDLT
Sbjct: 197 KLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTR 256
Query: 181 KLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVXXXXXXX 240
K+I+EG L RI ++ K ++L+VLLLED++VLLQKQD+ S +
Sbjct: 257 KMIHEGPLTWRI--SKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVG-------- 306
Query: 241 XXXXXRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQ-H 299
SD++ P +V ++RS V D+ A +++ TS+
Sbjct: 307 ---------SSDSKQTFSPVLKLNAV---LIRS----------VATDKRAFFIICTSKLG 344
Query: 300 SAQIYDLVASSASER 314
QIY+LVA ++S++
Sbjct: 345 PPQIYELVALTSSDK 359
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 255 AEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQ-HSAQIYDLV 307
EPD +W +V +D++ L+ RE RQEVIN+ L++ S + ++ DL+
Sbjct: 1 GEPDAQNWQHTVGKDVVAGLTQREIDRQEVINE---LFVTEASHLRTLRVLDLI 51
>pdb|3T06|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|E Chain E, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 418
Score = 184 bits (467), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 187/315 (59%), Gaps = 33/315 (10%)
Query: 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGXXXXXXXXXXXTFCSRQQIALESLR 60
+++IH+++ +MK R+E P++ ++ DL+L FDG FCS Q IALE ++
Sbjct: 114 LIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIK 173
Query: 61 ERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELT 120
++RK+SR F+ EAE +P CRRLQL+D+I + M RLTKYPLL ++ K+T +E
Sbjct: 174 TKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHE 233
Query: 121 KVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTRH 180
K+ RA D+ +EIL YVN+AVK+ E++HRL QKRLD T E+ NPL E+++LDLT
Sbjct: 234 KLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTR 293
Query: 181 KLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVXXXXXXX 240
K+I+EG L RI ++ K ++L+VLLLED++VLLQKQD+ S +
Sbjct: 294 KMIHEGPLTWRI--SKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVG-------- 343
Query: 241 XXXXXRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQ-H 299
SD++ P +V ++RS V D+ A +++ TS+
Sbjct: 344 ---------SSDSKQTFSPVLKLNAV---LIRS----------VATDKRAFFIICTSKLG 381
Query: 300 SAQIYDLVASSASER 314
QIY+LVA ++S++
Sbjct: 382 PPQIYELVALTSSDK 396
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 251 SDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQ-HSAQIYDLV 307
SD E EPD +W +V +D++ L+ RE RQEVIN+ L++ S + ++ DL+
Sbjct: 34 SDLEPEPDAQNWQHTVGKDVVAGLTQREIDRQEVINE---LFVTEASHLRTLRVLDLI 88
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|D Chain D, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 352
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 8/168 (4%)
Query: 48 FCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFAN 107
FCSRQ ++++ + F+ E++P C+ + L I M R+T+YPL+ N
Sbjct: 104 FCSRQLNGAALIQQKTDEAPDFKEFVKRLEMDPRCKGMPLSSFILKPMQRVTRYPLIIKN 163
Query: 108 LAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNP 167
+ + T +N + + +K AL++++E+ + VN+ V+E E+ RL IQ + E +
Sbjct: 164 ILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSDRLEWIQAHVQ---CEGLSEQ 220
Query: 168 LVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQ 215
LV L K ++ G L + + ELY L D ++L Q
Sbjct: 221 LVFNSVTNCLGPRKFLHSGKL-YKAKNNK----ELYGFLFNDFLLLTQ 263
>pdb|3QBV|B Chain B, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|D Chain D, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 351
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 8/168 (4%)
Query: 48 FCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFAN 107
FCSRQ ++++ + F+ ++P C+ + L + I M R+T+YPL+ N
Sbjct: 104 FCSRQLNGAALIQQKTDEAPDFKEFVKRLAMDPRCKGMPLSEFILKPMQRVTRYPLIIKN 163
Query: 108 LAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNP 167
+ + T +N + + +K AL++++E+ + VN+ V+E E+ RL IQ + E +
Sbjct: 164 ILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSDRLEWIQAHVQ---CEGLSEQ 220
Query: 168 LVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQ 215
LV L K ++ G L + + + ELY L D ++L Q
Sbjct: 221 LVFNSVTNCLGPRKFLHSGKL-YKAKSNK----ELYGFLFNDFLLLTQ 263
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 19/191 (9%)
Query: 48 FCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFAN 107
FCS Q L+++ +D+ FL + +P C+ + L + M R+T+YPLL +
Sbjct: 122 FCSCQLNGAALLQQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQRITRYPLLIRS 181
Query: 108 LAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEK--VD 165
+ + T ++ + + +K AL+R++E+ + VN+ V+E E+ RL IQ + + +
Sbjct: 182 ILENTPESHADHSSLKLALERAEELCSQVNEGVREKENSDRLEWIQAHVQCEGLAEQLIF 241
Query: 166 NPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVL--LQKQ-----D 218
N L N L KL++ G L T K EL+ L D ++L + KQ
Sbjct: 242 NSLTN-----CLGPRKLLHSGKL---YKTKSNK--ELHGFLFNDFLLLTYMVKQFAVSSG 291
Query: 219 DSKSFDSPSNS 229
K F S SN+
Sbjct: 292 SEKLFSSKSNA 302
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%)
Query: 48 FCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFAN 107
FCS Q ++++ + F+ ++P C+ + L I M R+T+YPL+ N
Sbjct: 177 FCSCQLNGAALIQQKTDEAPDFKEFVKRLAMDPRCKGMPLSSFILKPMQRVTRYPLIIKN 236
Query: 108 LAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQ 153
+ + T +N + + +K AL++++E+ + VN+ V+E E+ RL IQ
Sbjct: 237 ILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSDRLEWIQ 282
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 59/102 (57%)
Query: 48 FCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFAN 107
FCS Q L+++ +D+ FL + +P C+ + L + M R+T+YPLL +
Sbjct: 193 FCSCQLNGAALLQQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQRITRYPLLIRS 252
Query: 108 LAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRL 149
+ + T ++ + + +K AL+R++E+ + VN+ V+E E+ RL
Sbjct: 253 ILENTPESHADHSSLKLALERAEELCSQVNEGVREKENSDRL 294
>pdb|2Z0Q|A Chain A, Crystal Structure Of Dh-Ph Domain Of Rhogef3(Xpln)
Length = 352
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 47 TFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFA 106
++CS Q +A ++L + +++D R+ FL +P R+L L + + RL KYPLL
Sbjct: 110 SYCSNQ-VAAKALLDHKKQDHRVQDFLQRCLESPFSRKLDLWNFLDIPRSRLVKYPLLLR 168
Query: 107 NLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAE 144
+ ++T ++ + ++ A++ + I+ +N E+E
Sbjct: 169 EILRHTPNDNPDQQHLEEAINIIQGIVAEINTKTGESE 206
>pdb|3EO2|A Chain A, Crystal Structure Of The Rhogef Domain Of Human
Neuroepithelial Cell- Transforming Gene 1 Protein
Length = 231
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 48 FCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFAN 107
+CS Q+A ++L +++++D R+ FL +P R+L L + RL KYPLL
Sbjct: 124 YCS-NQLAAKALLDQKKQDPRVQDFLQRCLESPFSRKLDLWSFLDIPRSRLVKYPLLLKE 182
Query: 108 LAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQ 153
+ K+T ++ ++ A+ + +L+ +N E+E Q+ + +++
Sbjct: 183 ILKHTPKEHPDVQLLEDAILIIQGVLSDINLKKGESECQYYIDKLE 228
>pdb|2DFK|A Chain A, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|C Chain C, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 402
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 26/157 (16%)
Query: 3 DIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGXXXXXXXXXXXTFCSRQQIALESLRER 62
D+ +NN + P + ++G L+ DG +C+ A L +
Sbjct: 103 DLEKQYNN-------DDPHLSEIGPCFLEHQDGFWIYS------EYCNNHLDACMEL-SK 148
Query: 63 RRKDSRLNAFLTEAELNPLCRRLQ-LKDIIPTGML-----RLTKYPLLFANLAKYTVDNE 116
KDSR F EA CR LQ + DI G L ++ KYPL A L KYT +
Sbjct: 149 LMKDSRYQHFF-EA-----CRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDH 202
Query: 117 NELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQ 153
++ V AL + + +N+ + E+ ++A+ Q
Sbjct: 203 SDYRYVAAALAVMRNVTQQINERKRRLENIDKIAQWQ 239
>pdb|2VRW|B Chain B, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 406
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 15/145 (10%)
Query: 84 RLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEA 143
R L+D++ M R+ KY LL L K+T D E ++ ALD +++ VN+ ++
Sbjct: 150 RFTLRDLLMVPMQRVLKYHLLLQELVKHTQD-ATEKENLRLALDAMRDLAQCVNEVKRDN 208
Query: 144 EDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELY 203
E ++ Q E +D L N R K+ +G L++ R K + Y
Sbjct: 209 ETLRQITNFQ-----LSIENLDQSLAN------YGRPKI--DGELKITSVERRSK-TDRY 254
Query: 204 VLLLEDIIVLLQKQDDSKSFDSPSN 228
LL+ +++ +++ DS + N
Sbjct: 255 AFLLDKALLICKRRGDSYDLKASVN 279
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 18/156 (11%)
Query: 67 SRLNAFLTEAELNPLCRRLQ-LKDIIPTGML-----RLTKYPLLFANLAKYTVDNENELT 120
SRL CR LQ + DI G L ++ KYPL A L KYT +
Sbjct: 224 SRLTKLSKYVYFFEACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFK 283
Query: 121 KVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTRH 180
V+ AL K + +N+ + E+ ++A+ Q ++ E +L +
Sbjct: 284 DVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGE-----------DLLVRSS 332
Query: 181 KLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQK 216
+LIY G L R+ + K + L + ++ +K
Sbjct: 333 ELIYSGEL-TRVTQPQAKSQQRMFFLFDHQLIYCKK 367
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 18/156 (11%)
Query: 67 SRLNAFLTEAELNPLCRRLQ------LKDIIPTGMLRLTKYPLLFANLAKYTVDNENELT 120
SRL CR LQ L + T + ++ KYPL A L KYT +
Sbjct: 261 SRLTKLSKYVYFFEACRLLQKXIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFK 320
Query: 121 KVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTRH 180
V+ AL K + +N+ + E+ ++A+ Q ++ E +L +
Sbjct: 321 DVEAALHAXKNVAQLINERKRRLENIDKIAQWQSSIEDW-----------EGEDLLVRSS 369
Query: 181 KLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQK 216
+LIY G L R+ + K + L + ++ +K
Sbjct: 370 ELIYSGEL-TRVTQPQAKSQQRXFFLFDHQLIYCKK 404
>pdb|3KY9|A Chain A, Autoinhibited Vav1
pdb|3KY9|B Chain B, Autoinhibited Vav1
Length = 587
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 21/140 (15%)
Query: 84 RLQLKDIIPTGMLRLTKYPLLFANLAKYT---VDNENELTKVKRALDRSKEILNYVNQAV 140
R L+D++ M R+ KY LL L K+T ++ EN ++ ALD +++ VN+
Sbjct: 322 RFTLRDLLMVPMQRVLKYHLLLQELVKHTQEAMEKEN----LRLALDAMRDLAQCVNEVK 377
Query: 141 KEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLI 200
++ E ++ Q E +D L + R K+ +G L++ R K+
Sbjct: 378 RDNETLRQITNFQ-----LSIENLDQSLAH------YGRPKI--DGELKITSVERRSKM- 423
Query: 201 ELYVLLLEDIIVLLQKQDDS 220
+ Y LL+ +++ +++ DS
Sbjct: 424 DRYAFLLDKALLICKRRGDS 443
>pdb|3BJI|A Chain A, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|B Chain B, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 378
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 21/140 (15%)
Query: 84 RLQLKDIIPTGMLRLTKYPLLFANLAKYT---VDNENELTKVKRALDRSKEILNYVNQAV 140
R L+D++ M R+ KY LL L K+T ++ EN ++ ALD +++ VN+
Sbjct: 131 RFTLRDLLMVPMQRVLKYHLLLQELVKHTQEAMEKEN----LRLALDAMRDLAQCVNEVK 186
Query: 141 KEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLI 200
++ E ++ Q E +D L + R K+ +G L++ R K+
Sbjct: 187 RDNETLRQITNFQ-----LSIENLDQSLAH------YGRPKI--DGELKITSVERRSKM- 232
Query: 201 ELYVLLLEDIIVLLQKQDDS 220
+ Y LL+ +++ +++ DS
Sbjct: 233 DRYAFLLDKALLICKRRGDS 252
>pdb|1F5X|A Chain A, Nmr Structure Of The Y174 Autoinhibited Dbl Homology
Domain
Length = 208
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 84 RLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQA 139
R L+D++ M R+ KY LL L K+T D E ++ ALD +++ VN+
Sbjct: 152 RFTLRDLLMVPMQRVLKYHLLLQELVKHTQDA-TEKENLRLALDAMRDLAQCVNEV 206
>pdb|13PK|A Chain A, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|13PK|B Chain B, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|13PK|C Chain C, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|13PK|D Chain D, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|16PK|A Chain A, Phosphoglycerate Kinase From Trypanosoma Brucei
Bisubstrate Analog
Length = 415
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 19/113 (16%)
Query: 95 MLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQK 154
ML+ Y LL YT + K + SK L + +K+AED R ++
Sbjct: 226 MLQRIDY-LLIGGAMAYTFLKAQGYSIGKSKCEESK--LEFARSLLKKAED--RKVQVIL 280
Query: 155 RLDR---TPFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYV 204
+D T F+ VD+PL+ E +N I EG++ L I K IE YV
Sbjct: 281 PIDHVCHTEFKAVDSPLITEDQN--------IPEGHMALDIG---PKTIEKYV 322
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,005,107
Number of Sequences: 62578
Number of extensions: 292770
Number of successful extensions: 955
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 902
Number of HSP's gapped (non-prelim): 48
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)