Query psy11457
Match_columns 315
No_of_seqs 192 out of 1395
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 18:55:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3520|consensus 100.0 6E-66 1.3E-70 520.8 14.6 270 1-315 441-711 (1167)
2 KOG4424|consensus 100.0 1.5E-35 3.3E-40 280.7 18.2 237 1-315 117-359 (623)
3 KOG3523|consensus 100.0 9.9E-35 2.1E-39 276.0 20.6 208 3-224 310-525 (695)
4 KOG4305|consensus 100.0 2.8E-31 6E-36 268.9 17.0 214 1-228 390-611 (1029)
5 KOG3521|consensus 100.0 6.1E-31 1.3E-35 251.7 14.4 221 41-314 272-515 (846)
6 KOG2996|consensus 100.0 1.6E-29 3.5E-34 239.0 15.2 202 1-224 246-447 (865)
7 KOG3518|consensus 100.0 8.5E-29 1.8E-33 221.4 9.3 243 1-314 175-421 (521)
8 smart00325 RhoGEF Guanine nucl 99.9 1.9E-25 4E-30 191.1 13.7 131 1-138 49-180 (180)
9 cd00160 RhoGEF Guanine nucleot 99.9 7.8E-25 1.7E-29 187.4 13.8 129 1-137 52-181 (181)
10 PF00621 RhoGEF: RhoGEF domain 99.9 6.2E-23 1.3E-27 174.7 13.1 132 1-138 49-180 (180)
11 COG5422 ROM1 RhoGEF, Guanine n 99.9 2E-22 4.3E-27 198.3 6.3 213 1-228 539-759 (1175)
12 KOG3522|consensus 99.8 1.1E-18 2.4E-23 172.3 10.4 181 1-215 52-232 (925)
13 KOG3531|consensus 99.7 3.1E-18 6.7E-23 168.5 6.7 191 1-217 584-782 (1036)
14 KOG0689|consensus 99.7 1.9E-18 4.1E-23 164.3 3.4 227 1-314 115-349 (448)
15 KOG2070|consensus 99.7 3E-16 6.5E-21 147.1 13.9 191 1-216 152-342 (661)
16 KOG3519|consensus 99.7 1.5E-16 3.2E-21 163.0 8.4 198 1-217 388-595 (756)
17 KOG4240|consensus 99.6 1.1E-16 2.3E-21 162.8 4.3 222 1-314 687-917 (1025)
18 KOG3524|consensus 99.5 4.5E-15 9.7E-20 144.3 6.1 165 39-217 463-628 (850)
19 cd01222 PH_clg Clg (common-sit 99.2 2.1E-11 4.5E-16 93.5 7.5 83 180-315 2-85 (97)
20 cd01261 PH_SOS Son of Sevenles 99.2 6.5E-11 1.4E-15 93.0 6.9 85 180-315 2-99 (112)
21 cd01220 PH_CDEP Chondrocyte-de 99.1 5.4E-10 1.2E-14 86.3 8.2 81 181-315 1-87 (99)
22 cd01218 PH_phafin2 Phafin2 Pl 99.1 4.5E-10 9.7E-15 87.3 7.7 84 179-315 1-88 (104)
23 cd01232 PH_TRIO Trio pleckstri 99.0 2.1E-09 4.6E-14 84.9 9.2 88 180-314 3-101 (114)
24 cd01224 PH_Collybistin Collybi 98.9 3.2E-09 6.9E-14 82.4 7.2 85 181-315 1-97 (109)
25 cd01219 PH_FGD FGD (faciogenit 98.9 6E-09 1.3E-13 80.9 7.5 82 182-315 2-89 (101)
26 cd01227 PH_Dbs Dbs (DBL's big 98.8 2.8E-08 6.2E-13 80.3 8.6 85 181-314 2-104 (133)
27 cd01221 PH_ephexin Ephexin Ple 98.8 4E-08 8.6E-13 78.4 9.0 45 180-224 1-53 (125)
28 cd01223 PH_Vav Vav pleckstrin 98.6 1.5E-07 3.3E-12 73.8 6.2 85 181-315 3-101 (116)
29 cd01226 PH_exo84 Exocyst compl 98.3 1.4E-06 3.1E-11 66.7 6.3 84 182-315 2-88 (100)
30 cd01228 PH_BCR-related BCR (br 98.2 1.6E-06 3.4E-11 65.2 3.8 77 180-314 1-83 (96)
31 KOG4269|consensus 98.1 2.4E-06 5.2E-11 86.2 3.6 181 1-215 387-585 (1112)
32 PF15405 PH_5: Pleckstrin homo 97.0 0.00095 2.1E-08 54.5 4.3 46 182-228 1-51 (135)
33 smart00233 PH Pleckstrin homol 96.6 0.0076 1.7E-07 44.5 6.6 37 183-219 2-38 (102)
34 PF00169 PH: PH domain; Inter 96.5 0.009 1.9E-07 44.9 6.4 37 182-219 1-37 (104)
35 cd01255 PH_TIAM TIAM Pleckstri 96.5 0.0042 9.1E-08 50.2 4.4 110 178-315 23-144 (160)
36 KOG0931|consensus 95.5 0.032 7E-07 53.4 6.2 105 104-224 351-467 (627)
37 cd00821 PH Pleckstrin homology 95.3 0.028 6E-07 40.9 4.3 82 185-314 2-86 (96)
38 cd01229 PH_etc2 Epithelial cel 94.8 0.036 7.8E-07 43.5 3.7 48 179-226 5-53 (129)
39 cd01225 PH_Cool_Pix Cool (clon 94.6 0.32 6.9E-06 38.0 8.4 44 180-224 10-55 (111)
40 PF15411 PH_10: Pleckstrin hom 94.2 0.076 1.7E-06 42.1 4.4 36 180-218 5-40 (116)
41 KOG3524|consensus 94.1 0.084 1.8E-06 53.1 5.4 141 1-148 440-580 (850)
42 KOG3522|consensus 91.8 2.2 4.7E-05 44.3 11.6 178 10-216 74-268 (925)
43 cd00900 PH-like Pleckstrin hom 91.7 0.62 1.4E-05 33.8 6.1 23 197-219 17-39 (99)
44 cd01233 Unc104 Unc-104 pleckst 90.5 1.5 3.3E-05 33.4 7.3 35 183-218 3-37 (100)
45 cd01246 PH_oxysterol_bp Oxyste 90.4 1 2.3E-05 33.0 6.1 33 185-218 2-34 (91)
46 cd01247 PH_GPBP Goodpasture an 90.2 1.3 2.9E-05 33.3 6.6 36 271-314 46-81 (91)
47 cd01256 PH_dynamin Dynamin ple 87.1 3.9 8.4E-05 31.4 7.0 43 259-313 43-93 (110)
48 KOG0930|consensus 86.7 5.4 0.00012 36.3 9.0 112 147-314 229-364 (395)
49 cd01252 PH_cytohesin Cytohesin 84.8 5.2 0.00011 31.7 7.4 31 184-215 2-32 (125)
50 cd01265 PH_PARIS-1 PARIS-1 ple 83.4 5.2 0.00011 30.2 6.5 23 289-314 61-83 (95)
51 cd01260 PH_CNK Connector enhan 83.2 5.6 0.00012 29.8 6.6 33 184-216 2-37 (96)
52 cd01250 PH_centaurin Centaurin 82.8 6.2 0.00013 28.9 6.7 31 185-215 2-32 (94)
53 cd01238 PH_Tec Tec pleckstrin 78.7 5.6 0.00012 30.7 5.3 23 290-315 75-97 (106)
54 cd01235 PH_SETbf Set binding f 76.7 7.3 0.00016 29.2 5.4 24 288-314 67-90 (101)
55 cd01245 PH_RasGAP_CG5898 RAS G 68.5 6.9 0.00015 29.9 3.5 40 260-314 45-88 (98)
56 cd01241 PH_Akt Akt pleckstrin 68.5 37 0.0008 25.8 7.6 27 183-210 2-28 (102)
57 cd01251 PH_centaurin_alpha Cen 65.5 21 0.00045 27.3 5.7 21 291-314 69-89 (103)
58 PF12210 Hrs_helical: Hepatocy 59.4 62 0.0013 24.6 6.9 89 47-147 2-90 (96)
59 cd08812 CARD_RIG-I_like Caspas 58.9 47 0.001 24.7 6.4 76 3-79 2-79 (88)
60 cd01263 PH_anillin Anillin Ple 54.8 41 0.0009 26.8 5.8 32 184-215 3-35 (122)
61 KOG1729|consensus 53.4 3.2 6.9E-05 38.2 -0.9 38 176-216 40-77 (288)
62 cd01264 PH_melted Melted pleck 50.7 54 0.0012 25.2 5.7 14 301-314 77-90 (101)
63 PF15409 PH_8: Pleckstrin homo 46.5 1E+02 0.0022 23.1 6.4 15 300-314 64-78 (89)
64 cd01266 PH_Gab Gab (Grb2-assoc 42.8 90 0.002 23.8 6.0 14 301-314 84-97 (108)
65 cd01253 PH_beta_spectrin Beta- 36.7 1.5E+02 0.0033 22.1 6.4 23 289-314 72-94 (104)
66 cd01244 PH_RasGAP_CG9209 RAS_G 31.0 2.2E+02 0.0049 21.5 6.3 13 303-315 77-89 (98)
67 cd01230 PH_EFA6 EFA6 Pleckstri 27.1 1.8E+02 0.0038 22.9 5.3 21 195-215 22-42 (117)
68 cd01257 PH_IRS Insulin recepto 27.0 1.4E+02 0.0031 22.7 4.7 22 290-314 70-91 (101)
69 cd01236 PH_outspread Outspread 26.3 1.6E+02 0.0036 22.6 4.9 21 291-314 73-93 (104)
70 PF08650 DASH_Dad4: DASH compl 24.6 2.7E+02 0.0059 20.0 6.0 48 102-156 10-58 (72)
71 PF05633 DUF793: Protein of un 23.4 5.7E+02 0.012 24.7 8.8 100 39-139 67-170 (389)
72 PF00636 Ribonuclease_3: Ribon 22.3 1.1E+02 0.0023 23.3 3.3 55 24-93 5-59 (114)
73 PF15601 Imm42: Immunity prote 22.3 1.8E+02 0.0038 23.7 4.5 31 98-132 35-65 (134)
74 cd01237 Unc112 Unc-112 pleckst 21.6 2.4E+02 0.0053 21.9 4.9 17 298-314 76-92 (106)
No 1
>KOG3520|consensus
Probab=100.00 E-value=6e-66 Score=520.82 Aligned_cols=270 Identities=49% Similarity=0.739 Sum_probs=259.6
Q ss_pred CHHHHHHHHHHHHHhHhcCCC-CCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhC
Q psy11457 1 MLDIHSTFNNSMKLKRKESPV-VGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELN 79 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~~~-v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~ 79 (315)
|+++|..|+++|+++++++.. +..|||+++++|+|.+|++|+++|++||++|..|++.|+.+++++++|++|+++++++
T Consensus 441 L~eiH~~f~~~lk~rr~e~~~vI~~IGDlLl~~FsGe~ae~L~~~~a~FCs~q~~ALe~~K~k~~KD~rFq~fvkkaeS~ 520 (1167)
T KOG3520|consen 441 LIEIHSSFLQRLKERRKESLVVIKRIGDLLLDQFSGENAERLKKTYAQFCSRQSIALEQLKTKQAKDKRFQAFVKKAESN 520 (1167)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHcCchHHHHHHHHHHHHhhccHHHHHHHHHHHhccHHHHHHHHHhhcc
Confidence 689999999999999999987 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy11457 80 PLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRT 159 (315)
Q Consensus 80 ~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~ 159 (315)
|.||||+|+++|+..|||||||||||++|+|||.++..|++.|++|++.+|+|+.+||++|+++|+.+||.+||+|+|.+
T Consensus 521 p~cRRL~lkd~I~~v~QRLTKYPLLle~I~k~T~~~~~E~e~L~~Al~~~K~IL~~Vn~aV~~~E~~~RL~eiq~RlD~~ 600 (1167)
T KOG3520|consen 521 PVCRRLGLKDCILLVTQRLTKYPLLLERILKYTEDNTTEREKLQRALELVKEILSAVDQAVKEAEKKQRLEEIQRRLDAK 600 (1167)
T ss_pred hHHHhhcchHHHHHHHHHHhhchHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecCCeeEEeCCCCCccccCCCCCC
Q psy11457 160 PFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSGPP 239 (315)
Q Consensus 160 ~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~~k~~~k~~~~~~~~~~~~~~~ 239 (315)
++....+ ..+|+++||+.|+|||+|.|+|+.+ ++|.+++|++||+|+||+++++|+||+|+++.
T Consensus 601 s~~~~~~--~~~F~kldLt~rkLihdG~Ltwk~~--~gk~~dv~vlLLtD~LvlLqeqD~Kyifksl~------------ 664 (1167)
T KOG3520|consen 601 SLSKYKN--GEEFRKLDLTRRKLIHDGPLTWKTA--RGKTKDVHVLLLTDILVLLQEKDQKYIFKSLD------------ 664 (1167)
T ss_pred hhhhccc--cchhhhhhhhhhheeccCceEEeec--cCchhhhHHHHHHHHHHHhhhcCceeEeeccc------------
Confidence 9888776 7889999999999999999999998 66778999999999999999999999999642
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCccccccccCccccccccccccCceEEEEEcCCCCCeeEEEEcCCccccC
Q psy11457 240 PPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQHSAQIYDLVASSASERK 315 (315)
Q Consensus 240 ~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~~~~~~~li~~~~~~~~~~~l~a~s~~erk 315 (315)
.++|||+ |++| |||+||+|++|||||+++.++||||||+|+|++||+
T Consensus 665 -----------------~~spVis-------L~~l-----ivRevAtd~ka~FlIs~s~~~pqmYEL~a~T~sern 711 (1167)
T KOG3520|consen 665 -----------------KKSPVIS-------LQKL-----IVREVATDEKAFFLISMSDQGPEMYELVAQSKSERN 711 (1167)
T ss_pred -----------------cCCCcee-------hHHH-----HHHHHhccccceEEEecCCCCCeeEEEecCCHHHHH
Confidence 1459999 9999 999999999999999999999999999999999986
No 2
>KOG4424|consensus
Probab=100.00 E-value=1.5e-35 Score=280.69 Aligned_cols=237 Identities=19% Similarity=0.337 Sum_probs=198.8
Q ss_pred CHHHHHHHHH-HHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhC
Q psy11457 1 MLDIHSTFNN-SMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELN 79 (315)
Q Consensus 1 ll~~H~~fl~-~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~ 79 (315)
|+.+|..||. .|+.+. |||||.+..| |+++|++|+.||++|+++++.++.+++.|+.++.+++.+
T Consensus 117 i~~fh~qfllp~l~~r~--------Iadv~qKlAP------FLKmYseY~knydrA~~L~~~lt~rsp~F~~vl~~Iek~ 182 (623)
T KOG4424|consen 117 IHNFHGQFLLPELEKRI--------IADVFQKLAP------FLKMYSEYAKNYDRALKLFQTLTSRSPQFRKVVEEIEKQ 182 (623)
T ss_pred HHHHHHHHhhhHHHhhH--------HHHHHHHhhh------HHHHHHHHHhcchhHHHHHHHHHhhChHHHHHHHHHhhc
Confidence 4567855554 666555 9999999975 889999999999999999999999999999999999999
Q ss_pred CcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy11457 80 PLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRT 159 (315)
Q Consensus 80 ~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~ 159 (315)
|.|.+++|.++++.|||||+||.|||+++++++|++.+|+.++++|++.|...+.++|.+++++|+.++|.++|.+|.+.
T Consensus 183 ~~cg~l~LqhhMiePVQRIPRYeLLLk~yl~~lp~~d~D~~d~~ksLe~I~~aA~HsNaai~k~E~~~kLlevqe~LG~e 262 (623)
T KOG4424|consen 183 PECGGLKLQHHMIEPVQRVPRYELLLQDYLLYLPPDDPDYKDLKKSLELISTAASHSNAAITKMERLQKLLEVQEQLGNE 262 (623)
T ss_pred hhcCCccchhheechhhhhhHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred CCCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEec----CCeeEEeCCCCCccccCC
Q psy11457 160 PFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQ----DDSKSFDSPSNSCEAVSS 235 (315)
Q Consensus 160 ~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~----~~k~~~k~~~~~~~~~~~ 235 (315)
+ +.++ +.|.||.||.+.+.... ++..+++++|||||++++|+.+ +.||...
T Consensus 263 ~-dIV~------------PsreLiKEG~l~Kis~k-~~~~qeRylfLFNd~~lyc~~r~~~~~~k~~~r----------- 317 (623)
T KOG4424|consen 263 E-DIVS------------PSRELIKEGQLQKISAK-NGTTQERYLFLFNDILLYCKPRKRLPGSKYEVR----------- 317 (623)
T ss_pred c-cccC------------cHHHHhhccceeeeecc-CCCcceeEEEEehhHHHhhhhhhhcccceeccc-----------
Confidence 2 2222 35999999999876652 4668899999999999999864 3444433
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccCCCccccccccCcccccccccccc-CceEEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 236 SGPPPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVIND-RSALYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 236 ~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~~-~~~~~li~~~~~~~~~~~l~a~s~~er 314 (315)
..++ +..+ ++.+..+. -..-|++++. -.-.||.|.|.+|+
T Consensus 318 ------------------------~~~s-------~~~~-----~v~~~~~~~~~~tF~~~G~---~r~vel~a~t~~ek 358 (623)
T KOG4424|consen 318 ------------------------ARCS-------ISHM-----QVQEDDNEELPHTFILTGK---KRGVELQARTEQEK 358 (623)
T ss_pred ------------------------eeec-------cCcc-----hhcccccccCCceEEEecc---cceEEeecCchhhH
Confidence 3455 5666 66665544 2445555552 34789999999987
Q ss_pred C
Q psy11457 315 K 315 (315)
Q Consensus 315 k 315 (315)
+
T Consensus 359 ~ 359 (623)
T KOG4424|consen 359 K 359 (623)
T ss_pred H
Confidence 4
No 3
>KOG3523|consensus
Probab=100.00 E-value=9.9e-35 Score=275.98 Aligned_cols=208 Identities=20% Similarity=0.365 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCCcc
Q psy11457 3 DIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLC 82 (315)
Q Consensus 3 ~~H~~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~~~ 82 (315)
++...||.+|+.|.+++..+.+|+||+.+|++ .++.+|..||+|+.....+++.++..|+.|+..+++++.+|.|
T Consensus 310 ~~Serfl~dLE~r~e~ni~i~dicDiv~~ha~-----~~f~vYv~Y~tNQ~YQeRT~qrL~~~n~~F~e~l~rLE~~p~C 384 (695)
T KOG3523|consen 310 EVSERFLCDLEARLEENIFIDDICDIVEDHAA-----KHFSVYVKYCTNQVYQERTLQRLLTENPAFREVLERLESSPKC 384 (695)
T ss_pred HHHHHHHHHHHHHHHhCchhhHHHHHHHHhcc-----cccceeehhccchHHHHHHHHHHHhcChHHHHHHHHHhcCccc
Confidence 34479999999999999999999999999986 3559999999999999999999999999999999999999999
Q ss_pred cCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy11457 83 RRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFE 162 (315)
Q Consensus 83 ~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~~~~ 162 (315)
.+|+|.+||+.|||||||||||+++|++.|++.+++++...+|+..+.+++..+|+.++.++....|..|.++|+.. .
T Consensus 385 ~~Lpl~SFLiLPmQRITRL~LLl~nIl~rt~~~ser~~~a~~Al~av~klVr~CNe~a~rMertEeli~i~~~leF~--k 462 (695)
T KOG3523|consen 385 QGLPLRSFLILPMQRITRLPLLLDNILKRTEEGSERYETATKALKAVSKLVRDCNEGARRMERTEELIRISRQLEFK--K 462 (695)
T ss_pred cCCCchhhhhchHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999974 2
Q ss_pred ccCCcchhhhccccCCCceEEEEeeEEEEee-------cCCCcceEEEEEecCCcEEEEEec-CCeeEEe
Q psy11457 163 KVDNPLVNEYRNLDLTRHKLIYEGNLQLRIA-------TTRQKLIELYVLLLEDIIVLLQKQ-DDSKSFD 224 (315)
Q Consensus 163 ~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~-------~~~~k~~~~~~fLf~d~Ll~~~~~-~~k~~~k 224 (315)
....|+++. .|+|++.|.|+-... .++...+.+|+|||||+||+|+++ +++|.++
T Consensus 463 vK~~PLiS~-------sRwLvk~GELt~l~~~~~s~~l~~k~~~~~vylfLFnD~Llitk~k~~~~f~V~ 525 (695)
T KOG3523|consen 463 VKAFPLVSQ-------SRWLVKRGELTQLVERRASPLLFSKRLSKTVYLFLFNDLLLITKKKSEGSFQVF 525 (695)
T ss_pred cceeeeccc-------hhhhhhccccceeecccccchhhcccccceeeeeeecceeeEeeecCCCceEEe
Confidence 222345544 399999999964331 123335699999999999999975 6799877
No 4
>KOG4305|consensus
Probab=99.97 E-value=2.8e-31 Score=268.87 Aligned_cols=214 Identities=27% Similarity=0.457 Sum_probs=185.3
Q ss_pred CHHHHHHHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCC
Q psy11457 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNP 80 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~ 80 (315)
|+.+|+.||.+|..|++.+|+|+.|||||++|.+ .| +.|..||+++..|.++++..++.|+.|+.|+++|+..|
T Consensus 390 ii~ln~~LL~aL~~r~k~~G~V~~IGdIll~~lp-----~~-~~yi~Y~a~q~~ak~lie~k~k~n~~Fa~fl~~~~~sp 463 (1029)
T KOG4305|consen 390 IIQLNEKLLKALRVRQKLSGVVEGIGDILLAWLP-----KA-EPYISYGANQAYAKALIEQKKKQNPRFARFLKECESSP 463 (1029)
T ss_pred HHHHHHHHHHHHHHhhccCCccchHHHHHHHHhh-----hh-hHHHHHHhhhHHHHHHHHHHhccCchHHHHHHHHHhCh
Confidence 5789999999999999999999999999999996 34 66999999999999999999999999999999999999
Q ss_pred cccCCCcchhhhhhhhhccchHHHHHHHHhhC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy11457 81 LCRRLQLKDIIPTGMLRLTKYPLLFANLAKYT-VDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRT 159 (315)
Q Consensus 81 ~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T-~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~ 159 (315)
.|++++|.+||.+|+||++||||||++||||| |.+|+|+..|.+|++.+++++..||...+++||..++.+++..+..+
T Consensus 464 ~~rkl~L~~FL~kp~sRl~RYpLllr~ILk~TdP~n~~D~q~L~~aI~~ir~l~~~iN~~~g~aen~~~l~~l~~qllfe 543 (1029)
T KOG4305|consen 464 ESRKLDLVSFLTKPTSRLQRYPLLLREILKHTDPENHPDLQLLKKAIEIIRGLLSEINQGSGEAENRCRLEELSQQLLFE 543 (1029)
T ss_pred hhhccchhhhhccccchhheeeHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHhChhhccchhhhhHHHHHHHhhcc
Confidence 99999999999999999999999999999999 77789999999999999999999999999999999999999999987
Q ss_pred CCCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEE-EEEecCCcEEEEEe-----cCCee-EEeCCCC
Q psy11457 160 PFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIEL-YVLLLEDIIVLLQK-----QDDSK-SFDSPSN 228 (315)
Q Consensus 160 ~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~-~~fLf~d~Ll~~~~-----~~~k~-~~k~~~~ 228 (315)
+.+.....+. -++|.|+++|.|..+.. .+.++.+. +.|||.|.+|++.+ +.++| +|..|++
T Consensus 544 ~~e~~~L~l~-------d~~R~l~fkgil~~~~~-~~~~~~~~~~~fLl~d~lLLt~~~k~~~~~~~~kvf~RPiP 611 (1029)
T KOG4305|consen 544 PGEAVNLGLN-------DPERKLIFKGILKRKEL-SKTDGTKEDYIFLLLDNLLLTRKVKQNNKRHRHKVFSRPIP 611 (1029)
T ss_pred cccccccccc-------Chhhhcceeeeeeeccc-cccCCCccceeehhhhhhhhhhhhhhccccccceeeccCcc
Confidence 5433322111 13699999999886553 24444455 99999999999874 23455 5556765
No 5
>KOG3521|consensus
Probab=99.97 E-value=6.1e-31 Score=251.71 Aligned_cols=221 Identities=26% Similarity=0.465 Sum_probs=186.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCCcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHH
Q psy11457 41 FQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELT 120 (315)
Q Consensus 41 ~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~ 120 (315)
++..|..||..+..++++++++.+.|+-|++|+.|||+++.|.|+.|.|.+++||||||||+|||+.++|.|++. .+.+
T Consensus 272 ~f~pY~~ycle~s~cm~y~rel~~~n~lFrafvtW~Ekqk~c~RqkL~D~l~kPmQRLTKY~LLLkAVlK~t~d~-~e~E 350 (846)
T KOG3521|consen 272 WFRPYTNYCLEHSDCMKYIRELLKENELFRAFVTWAEKQKNCDRQKLIDTLSKPMQRLTKYPLLLKAVLKVTTDE-RERE 350 (846)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHhccchHHHHHHHHHHhhhhhhhHHHHHHhhhHHHHhhhhHHHHHHHHhhCCCH-HHHH
Confidence 349999999999999999999999999999999999999999999999999999999999999999999999865 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCc------chhhhc-cccCC----------CceEE
Q psy11457 121 KVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNP------LVNEYR-NLDLT----------RHKLI 183 (315)
Q Consensus 121 ~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~~~~~~~~~------~~~~~~-~l~l~----------~R~Li 183 (315)
.+...++.++.++.+||..++..+..++|...-+||+. ++.++.+ .+..|. .+||+ .|.|+
T Consensus 351 ai~aMi~svEsf~~~vN~~l~qrqererL~~vm~rIe~--ydvVd~~sdevdknLK~~~~~~Dl~apm~g~~~~htRqLl 428 (846)
T KOG3521|consen 351 AISAMIDSVESFTAHVNKELRQRQERERLAAVMRRIEG--YDVVDQDSDEVDKNLKLFLNLLDLTAPMHGRKPEHTRQLL 428 (846)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc--ccccCCcHHHHHHHhhhhhhhhccccCCCCCChhhhhhhh
Confidence 99999999999999999999999999999999999997 4444432 222333 34553 39999
Q ss_pred EEeeEEEEeecCCCcceEEEEEecCCcEEEEEec---CCee-EEeCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy11457 184 YEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQ---DDSK-SFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEAEPDP 259 (315)
Q Consensus 184 ~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~---~~k~-~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 259 (315)
.||.+..+.+ +....|||||||+|+||+|++. .++. +++
T Consensus 429 leGdlrmKeg--k~sK~DVhcfLfTDllLVcK~v~k~~drlKVIR----------------------------------- 471 (846)
T KOG3521|consen 429 LEGDLRMKEG--KGSKADVHCFLFTDLLLVCKKVQKKADRLKVIR----------------------------------- 471 (846)
T ss_pred hccceecccC--CCcccceeeeeehhHHHHhHHHhhhcccceeec-----------------------------------
Confidence 9999998876 6667799999999999999853 2333 333
Q ss_pred CCccCCCccccccccCccccccccccccCceEEEEEcCC-CCCe-eEEEEcCCcccc
Q psy11457 260 PDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQ-HSAQ-IYDLVASSASER 314 (315)
Q Consensus 260 ~~i~~~~~~~~l~~l~~~~~~~r~~~~~~~~~~li~~~~-~~~~-~~~l~a~s~~er 314 (315)
|.+- +.+| +++..+ |.++|++|.-.+ +.++ .|.++|+.++++
T Consensus 472 pPll-------~dkl-----v~q~~~-dpnsf~lVhLtEFh~a~~ayt~hcs~p~d~ 515 (846)
T KOG3521|consen 472 PPLL-------MDKL-----VCQYLR-DPNSFLLVHLTEFHTAQAAYTMHCSGPEDT 515 (846)
T ss_pred cchh-------hcce-----eeeecC-CCCceEEEeechhhhhhhhheeecCChhhH
Confidence 5566 6888 777665 789999998775 2233 799999998874
No 6
>KOG2996|consensus
Probab=99.96 E-value=1.6e-29 Score=239.01 Aligned_cols=202 Identities=18% Similarity=0.345 Sum_probs=174.4
Q ss_pred CHHHHHHHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCC
Q psy11457 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNP 80 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~ 80 (315)
|+.+|+.||.+|+.-.... .-+.++.+|+++- ++| -+|+.||++.+.|...+.++.+.+..++.-+++|.+..
T Consensus 246 l~klHt~ll~ei~~sv~v~-~~qtl~qVFikyk-----er~-liYG~YCS~~e~a~k~ln~llktrEdv~~kleEct~r~ 318 (865)
T KOG2996|consen 246 LNKLHTALLAEIEYSVKVA-GGQTLYQVFIKYK-----ERL-LIYGKYCSNVESARKLLNELLKTREDVSRKLEECTARA 318 (865)
T ss_pred HHHHHHHHHHHhHHHhhCC-CcccHHHHHHHHH-----HHH-hhhhhhhccchHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence 4679999999999876653 3478999999996 466 79999999999999999999999999999999999999
Q ss_pred cccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy11457 81 LCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTP 160 (315)
Q Consensus 81 ~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~~ 160 (315)
...+.+|.++|..||||++||+|||++|.|+|.+..+ ...|+.|++.|++++.+||+.+++.|....+.++|.+|++.+
T Consensus 319 nngkF~l~DLL~VPmQRvlKYhLLLkEL~kht~~a~e-k~~LkeAleaM~Dla~yiNEvkRD~etlr~I~efq~SIenL~ 397 (865)
T KOG2996|consen 319 NNGKFTLRDLLVVPMQRVLKYHLLLKELVKHTDEASE-KRNLKEALEAMEDLAQYINEVKRDNETLRVIDEFQLSIENLS 397 (865)
T ss_pred cCCceeeceeeeeeHHHHHHHHHHHHHHHHhcccCCh-hhhHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhHHhhc
Confidence 8789999999999999999999999999999988754 559999999999999999999999999999999999999743
Q ss_pred CCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecCCeeEEe
Q psy11457 161 FEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFD 224 (315)
Q Consensus 161 ~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~~k~~~k 224 (315)
. | +..|.+ ---+|+|...+ ..+.+.+++|+|||+.++|+|+++|..|-++
T Consensus 398 ~-----p-l~~~GR-------pkiDGElki~s-~~~~tkqdRyiFLfDkvviVCKrkG~sy~lk 447 (865)
T KOG2996|consen 398 Q-----P-LHDFGR-------PKIDGELKITS-TQAHTKQDRYIFLFDKVVIVCKRKGDSYELK 447 (865)
T ss_pred c-----h-HHHhCC-------CCcCceEEEee-hhcCCccceEEeEecceEEEeeccCcchhHH
Confidence 2 2 233422 23467776544 2355678999999999999999999988877
No 7
>KOG3518|consensus
Probab=99.95 E-value=8.5e-29 Score=221.44 Aligned_cols=243 Identities=20% Similarity=0.304 Sum_probs=196.3
Q ss_pred CHHHHHHHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCC
Q psy11457 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNP 80 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~ 80 (315)
|+.++..++.+|..+-.. + ..|+.||+.-- +.| ..|.+||.||++.+.++.+|+ .|+-.+.|+++.+. .
T Consensus 175 ifafnkel~n~ldaadld-~--v~ia~cfve~s-----~ef-e~yieyctny~rmmatl~~~~-q~~ilaka~qerq~-a 243 (521)
T KOG3518|consen 175 IFAFNKELLNDLDAADLD-C--VAIAECFVEKS-----EEF-EDYIEYCTNYHRMMATLTECM-QNKILAKAFQERQE-A 243 (521)
T ss_pred HHHHHHHHHHHHhhcccc-h--HHHHHHHHhcc-----hhH-HHHHHHHhhhHHHHHHHHHHH-HhHHHHHHHHHHHH-H
Confidence 355777788887765433 2 56899998763 345 899999999999999999996 77888888765543 3
Q ss_pred cccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy11457 81 LCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNE--NELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDR 158 (315)
Q Consensus 81 ~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~--~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~ 158 (315)
..+.++|.+||++|||||.||+|+|++|.++.+.+. +++..+..|++.|...+.+||++++++|...|+.+||+.+..
T Consensus 244 l~hsl~l~ayllkpvqrilkyhlfle~i~k~l~~~thpeel~qvk~ahd~m~~qa~~indekkkaeh~erlgeiqs~lqk 323 (521)
T KOG3518|consen 244 LKHSLPLGAYLLKPVQRILKYHLFLEEIEKHLDKDTHPEELDQVKDAHDTMQRQAAHINDEKKKAEHAERLGEIQSLLQK 323 (521)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999998664 588899999999999999999999999999999999999997
Q ss_pred CCCCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecCCeeEEeCCCCCccccCCCCC
Q psy11457 159 TPFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSGP 238 (315)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~~k~~~k~~~~~~~~~~~~~~ 238 (315)
+-.+.+.-|-+..| ..|+.||+.....+ ..++.+|||+.+|++++++|..|+.|
T Consensus 324 wkadeiqi~dlsay-------gdllleatfr~aga-----k~~rllflfdellli~kkr~anf~~k-------------- 377 (521)
T KOG3518|consen 324 WKADEIQIPDLSAY-------GDLLLEATFRIAGA-----KNERLLFLFDELLLITKKRDANFTCK-------------- 377 (521)
T ss_pred cccccccCCchhhh-------HHHHHHHHHHHhcc-----cccchHHHHHhHHhheeecCCceeee--------------
Confidence 76665555555555 44677777654332 34899999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCccccccccCcccccccccc--ccCceEEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 239 PPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVI--NDRSALYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 239 ~~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~--~~~~~~~li~~~~~~~~~~~l~a~s~~er 314 (315)
..|- +.+| ++-|+. .++-.|-+++-..+.. -|.+.|+|.++|
T Consensus 378 ---------------------~~il-------c~nl-----mlne~icpeeplsfqv~~fdnpka-q~~fma~sme~k 421 (521)
T KOG3518|consen 378 ---------------------AHIL-------CGNL-----MLNEVICPEEPLSFQVFHFDNPKA-QHTFMAKSMEDK 421 (521)
T ss_pred ---------------------hhhh-------ccch-----hhheeccCCCCceeEEEecCCcch-hhhhhhhhhHHH
Confidence 5677 7888 888876 5566777776654333 599999998876
No 8
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
Probab=99.93 E-value=1.9e-25 Score=191.05 Aligned_cols=131 Identities=34% Similarity=0.578 Sum_probs=123.7
Q ss_pred CHHHHHHHHHHHHHhHhcC-CCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhC
Q psy11457 1 MLDIHSTFNNSMKLKRKES-PVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELN 79 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~-~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~ 79 (315)
|+++|..|+..|+++..+| +....||++|+++. .++++|..||.+++.|.+.+.. +.+++.|..|+++++..
T Consensus 49 i~~~h~~~l~~l~~~~~~~~~~~~~i~~~f~~~~------~~~~~Y~~Y~~~~~~~~~~l~~-~~~~~~f~~~~~~~~~~ 121 (180)
T smart00325 49 IYEFHRDFLDELEERIEEWDDSPERIGDVFLKLE------EFFKIYSEYCSNHPDALELLKK-LKKNPRFQKFLKEIESS 121 (180)
T ss_pred HHHHHHHHHHHHHHHHhcccccccHHHHHHHHhh------HHHHHHHHHHHhHHHHHHHHHH-hhcChhHHHHHHHHhCC
Confidence 5789999999999999988 46899999999993 4669999999999999999999 57999999999999999
Q ss_pred CcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy11457 80 PLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQ 138 (315)
Q Consensus 80 ~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~ 138 (315)
+.+++++|.+||++|+||++||++||++|+|+|+++|+|+..+..|++.++.++..||+
T Consensus 122 ~~~~~~~l~~~L~~PvqRl~rY~lll~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iNe 180 (180)
T smart00325 122 PQCRRLTLESLLLKPVQRLTKYPLLLKELLKHTPEDHEDREDLKKALKAIKELANQVNE 180 (180)
T ss_pred hhhccCCHHHHHhHHHHHhccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999984
No 9
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Probab=99.92 E-value=7.8e-25 Score=187.37 Aligned_cols=129 Identities=32% Similarity=0.516 Sum_probs=122.1
Q ss_pred CHHHHHHHHHHHHHhHhcCC-CCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhC
Q psy11457 1 MLDIHSTFNNSMKLKRKESP-VVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELN 79 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~~-~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~ 79 (315)
|+++|..|+..|+.+..+|. ....||++|+++++ +.++|..||.+++.|.+.+..+++.++.|..|++.++.
T Consensus 52 i~~~h~~~l~~l~~~~~~~~~~~~~i~~~f~~~~~------~~~~Y~~Y~~~~~~~~~~l~~~~~~~~~f~~~~~~~~~- 124 (181)
T cd00160 52 IYEFHRIFLKSLEERVEEWDKSGPRIGDVFLKLAP------FFKIYSEYCSNHPDALELLKKLKKFNKFFQEFLEKAES- 124 (181)
T ss_pred HHHHHHHHHHHHHHHHhccCcccchHHHHHHHhhh------HHHHHHHHHhChHHHHHHHHHHHHccHHHHHHHHHHHH-
Confidence 57899999999999999886 67889999999974 66999999999999999999999899999999999998
Q ss_pred CcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy11457 80 PLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVN 137 (315)
Q Consensus 80 ~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn 137 (315)
.+++++|.++|++|+||++||+|||++|+|+|+++|+|+..|..|++.+++++.+||
T Consensus 125 -~~~~~~l~~~L~~PvQRl~rY~lLL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN 181 (181)
T cd00160 125 -ECGRLKLESLLLKPVQRLTKYPLLLKELLKHTPDGHEDREDLKKALEAIKEVASQVN 181 (181)
T ss_pred -hcccCCHHHHhhhhHHHhchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 678999999999999999999999999999999999999999999999999999987
No 10
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=99.89 E-value=6.2e-23 Score=174.65 Aligned_cols=132 Identities=31% Similarity=0.551 Sum_probs=124.5
Q ss_pred CHHHHHHHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCC
Q psy11457 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNP 80 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~ 80 (315)
|+++|..|+..|+.++.+++....||++|++.. .+..+|..||.+++.+...++++.+.+..|..|+++++.++
T Consensus 49 l~~~h~~ll~~L~~~~~~~~~~~~i~~if~~~~------~~~~~Y~~Y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 122 (180)
T PF00621_consen 49 LIEIHQQLLESLEERMKEWSNIQSIGDIFLKFE------PFLKVYISYCSNYPDALSLLEELRKKNSEFKKFLEEIENSP 122 (180)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHT------TGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred hhhHHHHHHHHHHHHHHhhhccchhhhhhhhcc------ccccceeccchheechhhhhhHHHhhccccccccccccccc
Confidence 578999999999999988889999999999943 35689999999999999999999888888999999999999
Q ss_pred cccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy11457 81 LCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQ 138 (315)
Q Consensus 81 ~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~ 138 (315)
.++++++.++|..|+|||+||+++|++|+++|+++|+|+..|..|+..+++++..||+
T Consensus 123 ~~~~~~l~~~l~~Piqrl~rY~lll~~llk~t~~~~~d~~~L~~a~~~i~~l~~~in~ 180 (180)
T PF00621_consen 123 ESKRLSLSSLLIKPIQRLPRYPLLLKRLLKNTPPDHPDYKSLQKALDQIKELIQHINE 180 (180)
T ss_dssp HCTTSTHHHHTTHHHHHHHHHHHHHHHHHHTSSTTSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHhhhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999999996
No 11
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=99.86 E-value=2e-22 Score=198.31 Aligned_cols=213 Identities=22% Similarity=0.381 Sum_probs=186.1
Q ss_pred CHHHHHHHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCC
Q psy11457 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNP 80 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~ 80 (315)
|+.++.+|+..|..++.-.|++..|||||+++.| +++.+..|..+++.|...++.....|+.|+.|..+.+.-.
T Consensus 539 i~avn~k~~~AL~~rQ~lsPiv~~I~DifL~~vP------~Fepfiky~a~~~yaky~~erekS~np~fa~Fd~~v~rl~ 612 (1175)
T COG5422 539 IYAVNSKLLKALTNRQCLSPIVNGIADIFLDYVP------KFEPFIKYGASQPYAKYEFEREKSVNPNFARFDHEVERLD 612 (1175)
T ss_pred HHHhhHHHHHHHhhcccccccccchHHHHHhhhh------hhhHHHHhhcccchhheeeeeccccCcchhhhhHHHHhcc
Confidence 4567899999999999999999999999999997 4488999999999999999999999999999999999766
Q ss_pred cccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy11457 81 LCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTP 160 (315)
Q Consensus 81 ~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~~ 160 (315)
..+++.+..||..|+.|++||+||+++++++|.++.+|.+++-++++.+++++..+|.+-+.++++.-+..+..+|..++
T Consensus 613 ~s~k~~ld~yLtk~~tr~~Ry~lL~e~vlkftd~d~~D~e~i~kv~d~~reFlsrl~~esG~Ae~r~~~~~l~qql~fk~ 692 (1175)
T COG5422 613 ESRKLELDGYLTKPTTRLARYPLLLEEVLKFTDPDNPDTEDIPKVIDMLREFLSRLNFESGKAENRGDLFHLNQQLLFKP 692 (1175)
T ss_pred hhhhhcccceecCCcccchhhHHHHhhhcccCCCCCcchhHhHHHHHHHHHHHHHHhHhhcccccchhhhhhhhhhccCc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCc---ceEEEEEecCCcEEEEEecCC-e----eEEeCCCC
Q psy11457 161 FEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQK---LIELYVLLLEDIIVLLQKQDD-S----KSFDSPSN 228 (315)
Q Consensus 161 ~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k---~~~~~~fLf~d~Ll~~~~~~~-k----~~~k~~~~ 228 (315)
+.++.++..++ |+++++|.+..+.. ++.. ..++++||+++++++|+.+.. | -+|.+|++
T Consensus 693 -e~~~lgl~D~~-------rkii~kgvlk~ka~-~~td~s~~~di~f~llDn~ll~~Kak~vnkw~~hkvfqrpip 759 (1175)
T COG5422 693 -EYVNLGLNDEY-------RKIIFKGVLKRKAK-SKTDGSLRGDIQFFLLDNMLLFCKAKAVNKWRQHKVFQRPIP 759 (1175)
T ss_pred -hhhcccccchh-------HHHHHhhhhhhhhh-ccCCcccccceeeeehhhHHHHhcccchhhhhhceeecCCCc
Confidence 66655555554 99999999986553 1211 349999999999999996532 3 35555543
No 12
>KOG3522|consensus
Probab=99.77 E-value=1.1e-18 Score=172.28 Aligned_cols=181 Identities=19% Similarity=0.276 Sum_probs=151.1
Q ss_pred CHHHHHHHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCC
Q psy11457 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNP 80 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~ 80 (315)
|+++|..||++++.+..+|...+.+|+.|..+|+. +....+|..||+|...|...++.. +.+.|..|++
T Consensus 52 ll~~he~fl~~l~s~~~~w~~qq~vga~~v~~fSk---~~v~~~Y~~y~nn~~~A~~~l~~~--~rpaf~~Fl~------ 120 (925)
T KOG3522|consen 52 LLEIHEDFLEQLCSRDQQWDEQQKVGASFVYSFSK---TAVLAAYSKYVNNFKRAKCALRNK--KRPAFSKFLE------ 120 (925)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhH---HHHHHHHHHHHhchhHHHHHHHHh--cchHHHHHHH------
Confidence 58999999999999999999999999999999985 467799999999999999999886 3899999988
Q ss_pred cccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy11457 81 LCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTP 160 (315)
Q Consensus 81 ~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~~ 160 (315)
++++| |+++|.|||+ ++||||.+|||+..|+.|+..+++++..+|+.++.++...++++..+-|+...
T Consensus 121 ---------l~~kP--r~P~y~lll~-mlkhtp~~Hpdr~~Lq~al~~~~~~ae~ine~kr~a~~~~e~q~~~rei~~r~ 188 (925)
T KOG3522|consen 121 ---------LMIKP--RFPRYELLLQ-MLKHTPLDHPDRLILQLALTLLETLAEKINEHKRFADEINELQAALREIEVRS 188 (925)
T ss_pred ---------HHhcc--CCchHHHHHH-HhhcCCcCCCchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 89999 9999999999 99999999999999999999999999999999999988888887777777532
Q ss_pred CCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEE
Q psy11457 161 FEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQ 215 (315)
Q Consensus 161 ~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~ 215 (315)
... ..+--++|.|+....+......|++ .++..|+|+|.++.+.
T Consensus 189 el~---------e~L~ag~r~lLl~dl~se~vy~~rk--~d~~~~~~rd~i~~~~ 232 (925)
T KOG3522|consen 189 ELM---------EDLGAGRRQLLLQDLVSETVYTGRK--KDRKAFLFRDLIVNTD 232 (925)
T ss_pred hhh---------hhcccchHHHHHHHHhhhhhhcccc--chhhheeeeeeeeeee
Confidence 111 0111134666666555544444444 4888899999888875
No 13
>KOG3531|consensus
Probab=99.73 E-value=3.1e-18 Score=168.48 Aligned_cols=191 Identities=21% Similarity=0.304 Sum_probs=166.7
Q ss_pred CHHHHHHHHHHHHHhHhcCC------CC--CChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHH
Q psy11457 1 MLDIHSTFNNSMKLKRKESP------VV--GDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAF 72 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~~------~v--~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~f 72 (315)
|.+.|+.||+.+++++..|+ .. .+|||++++..- -.++|.+|...|..++..+..-.+-..+|+++
T Consensus 584 l~k~h~~fLk~ieeria~weGrsnani~~~~~igDVmLk~m~------~l~i~~~~~q~h~~~l~~~t~~~k~~~r~~~v 657 (1036)
T KOG3531|consen 584 LTKFHEGFLKEIEERIALWEGRSNANIVIEQRIGDVMLKNMR------SLKITTTTTQRHAETLTTLTTTSKVLTRLEAV 657 (1036)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCCCceeeeeccCCcchhhhh------ccchhhhhHHhHHHHHHHHhhcchhhhhHHhh
Confidence 46789999999999999885 22 469999999863 34999999999999999999998889999999
Q ss_pred HHHHHhCCcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11457 73 LTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEI 152 (315)
Q Consensus 73 l~~~e~~~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i 152 (315)
.++.+...+| .+++..||++|++|+..|.+.|+++..|..++|.|+.+...+...+-+....|-..+-+.| +|.||
T Consensus 658 ~kefelqkvc-yLP~~~fllkpL~rllhyq~~LeRLc~~~~~~h~d~ad~~a~~~~~~~~tk~iqs~m~~~e---~l~El 733 (1036)
T KOG3531|consen 658 YKEFELQKVC-YLPLNTFLLKPLSRLLHYQLALERLCGHYSPTHEDFADCKAKPNPITEPTKPLQSVMIRTE---KLREL 733 (1036)
T ss_pred hccHHhhhcc-ccccchhhhccccHHHHHHHHHHHhhcccCCCccchHHHhhcccccccccccccccchhHH---HHHHH
Confidence 9999999998 7999999999999999999999999999999999999999999999888888888777777 89999
Q ss_pred HhhcCCCCCCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEec
Q psy11457 153 QKRLDRTPFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQ 217 (315)
Q Consensus 153 ~~~l~~~~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~ 217 (315)
++-|.+.. +++ -++|++|+.|.+.... +++-+.+.+|||+|++|++.+.
T Consensus 734 krdl~s~e------~LV-------~p~rE~ir~g~llK~s---kkgLqqrmfFLfsdillytsk~ 782 (1036)
T KOG3531|consen 734 KRDLASIE------NLV-------HPGREFIRSGCLLKLS---KKGLQQRMFFLFSDILLYTSKG 782 (1036)
T ss_pred HHhhhccc------ccc-------CcchhhhhcCCchhhc---cccchhhhhhhhhhhheeccCC
Confidence 99988532 112 2459999999998655 4556799999999999999875
No 14
>KOG0689|consensus
Probab=99.72 E-value=1.9e-18 Score=164.29 Aligned_cols=227 Identities=18% Similarity=0.251 Sum_probs=165.9
Q ss_pred CHHHHHH-HHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhC
Q psy11457 1 MLDIHST-FNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELN 79 (315)
Q Consensus 1 ll~~H~~-fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~ 79 (315)
|+++|.. |+.+++.+.+.. ...|.+|++|.. .+--+|..||.|.+.+...+.+. .+..|.+.+.+
T Consensus 115 i~~~h~~~fl~e~e~~~r~~---~~~~~~f~kh~~-----k~~~~y~~y~q~kp~s~~~~~~~-----~~~~~f~~~~~- 180 (448)
T KOG0689|consen 115 IYEFHKKEFLPELERCERDP---LELGQAFAKHER-----KNSVLYVTYCQNKPKSDYLLAEY-----DNEAFFQEYQT- 180 (448)
T ss_pred HHHhhcccCcchHHHhhhCH---HHHHHHHHHHHH-----HhhhhhhhhhcCCCCCcccceec-----ccchhhHHHhh-
Confidence 5889954 577888877765 789999999974 34239999999999984444332 23344444443
Q ss_pred CcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy11457 80 PLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRT 159 (315)
Q Consensus 80 ~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~ 159 (315)
+..+++++.+||++||||++||+|||+++++.++....|...|.+|.+.++.+..++|..+. ..+++ +.
T Consensus 181 ~~~~~l~l~~~l~kPiQR~~kYqlLL~~~~k~~~~~~~d~~~l~~a~e~m~~~~~~~~d~~~----~~~l~-------g~ 249 (448)
T KOG0689|consen 181 QLGHKLDLSSYLIKPVQRIMKYQLLLQDFLKFCEKAGDDTDALCKAEEVMRFVLKRCNDMMQ----VGRLQ-------GF 249 (448)
T ss_pred hcccccccchhhhhhhHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhHhhhc----cchhc-------cc
Confidence 44469999999999999999999999999999998888999999999999888887765442 11111 10
Q ss_pred CCCccCCcchhhhccccCC-CceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecC-----CeeEEeCCCCCcccc
Q psy11457 160 PFEKVDNPLVNEYRNLDLT-RHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQD-----DSKSFDSPSNSCEAV 233 (315)
Q Consensus 160 ~~~~~~~~~~~~~~~l~l~-~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~-----~k~~~k~~~~~~~~~ 233 (315)
+ .++. ...+++++++....+ +.++..++.+|||+.++||++... ..|++|
T Consensus 250 -----e---------~~l~~qG~l~~qd~f~v~~~-~~~~~~~R~vflFe~~v~Fse~~~~~~~~~~y~yk--------- 305 (448)
T KOG0689|consen 250 -----E---------GDLKAQGKLRRQDEFDVSHG-RAGKKKDRRVFLFERLVVFSKLRKPESGTETYVYK--------- 305 (448)
T ss_pred -----c---------cchHhhccccccCccceeec-cccccchhhhhhhhhhhhhhhhhcCCCCCcceeee---------
Confidence 0 1111 255777777655443 234467999999999999998644 688988
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCccccccccCccccccccc-cccCceEEEEEcCCCCCeeEEEEcCCcc
Q psy11457 234 SSSGPPPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEV-INDRSALYLVNTSQHSAQIYDLVASSAS 312 (315)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~-~~~~~~~~li~~~~~~~~~~~l~a~s~~ 312 (315)
..|+ +..+ ...++ .++...|-+++.....+++|.++|.|.+
T Consensus 306 --------------------------~~ik-------~~~l-----gle~n~~~s~~rF~i~~r~~~~~~~~vlqa~s~~ 347 (448)
T KOG0689|consen 306 --------------------------QHIK-------VNDL-----GLEENNDNSASRFEIWFRGRKKREAYVLQAGSKE 347 (448)
T ss_pred --------------------------cchh-------hhhe-----eeeccCCCCCcchhhhhhcccccceeEEeeCCHH
Confidence 5677 7777 66654 4666667777766556789999999998
Q ss_pred cc
Q psy11457 313 ER 314 (315)
Q Consensus 313 er 314 (315)
++
T Consensus 348 ~k 349 (448)
T KOG0689|consen 348 IK 349 (448)
T ss_pred HH
Confidence 76
No 15
>KOG2070|consensus
Probab=99.69 E-value=3e-16 Score=147.06 Aligned_cols=191 Identities=17% Similarity=0.300 Sum_probs=144.5
Q ss_pred CHHHHHHHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCC
Q psy11457 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNP 80 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~ 80 (315)
|+.+|+.++.+|+++........++|.+|+.-.+ .|+.+|..||.||+.|+..|++. ...+..|++......
T Consensus 152 I~t~~qdL~~qlEec~~~~~~q~RVGg~fln~ap-----~mkt~~~aYcanHP~AV~VL~k~---~dELek~me~Qgass 223 (661)
T KOG2070|consen 152 ICTFQQDLVQQLEECTKLPEAQQRVGGCFLNLAP-----QMKTLYLAYCANHPSAVNVLTKH---SDELEKFMETQGASS 223 (661)
T ss_pred hHhHHHHHHHHHHHhhcCchhhhhhhhHHHhhhH-----HHHHHHHHHHhcCchhhhHHHHh---HHHHHHHHHhcCCCC
Confidence 5678999999999999876667899999999974 79999999999999999999765 457888887665531
Q ss_pred cccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy11457 81 LCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTP 160 (315)
Q Consensus 81 ~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~~ 160 (315)
. .-+-|.-=|.+|+.|+-||+-||++|-++.++.|||+.+++++....+++...+.+--++.|-. |+-+-.-+.+
T Consensus 224 p-g~lvLttgLSkPfrrldkY~~lLQELERhme~~HpDrgD~qrs~avfk~~~~~Cq~lRkqKEle--LqiLt~~i~~-- 298 (661)
T KOG2070|consen 224 P-GILVLTTGLSKPFRRLDKYPTLLQELERHMEDYHPDRGDIQRSMAVFKNLSAQCQELRKQKELE--LQILTEPIRN-- 298 (661)
T ss_pred C-CeEEEecccchHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhhhhhh--hhhhcccccc--
Confidence 1 2355666788999999999999999999999999999999999999999988886654443332 1212222222
Q ss_pred CCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEe
Q psy11457 161 FEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQK 216 (315)
Q Consensus 161 ~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~ 216 (315)
+...-+.+ + .-.|+-|.+...-+ ....+++++.||.++|+++.-
T Consensus 299 ---w~g~d~s~-----l--G~iiymg~v~Vqy~--~ad~~dRy~~LF~~~llflsv 342 (661)
T KOG2070|consen 299 ---WEGDDIST-----L--GNIIYMGQVLVQYA--GADEKDRYLLLFPNVLLFLSV 342 (661)
T ss_pred ---cccchhhh-----c--cceEeeeehhhhhc--CcchhhheeeeccceeeeeEe
Confidence 21111111 1 34789998875433 233459999999999999974
No 16
>KOG3519|consensus
Probab=99.66 E-value=1.5e-16 Score=163.04 Aligned_cols=198 Identities=18% Similarity=0.329 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHHHHhHhcC---CCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHH
Q psy11457 1 MLDIHSTFNNSMKLKRKES---PVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAE 77 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~---~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e 77 (315)
|+.+|..|+..|+...... +....||.+|+.+++++ .+|.+||++|+.+...+..+ +++++++.|+..|.
T Consensus 388 i~~f~~~fl~~L~~~~~~~~~~~~~~~ig~~fL~~~~~f------~~ys~yc~~h~~~~~~l~~~-~~~~~~~~~l~~~~ 460 (756)
T KOG3519|consen 388 ILRFQKEFLKTLEQQINPELIPPSLSEIGPVFLEQLDVF------KIYSEYCNNHPKAQKKLSKL-KKKKKVKEFLEACN 460 (756)
T ss_pred HHHHHHHHHHHHHHhcchhhcchhHhHHHHHHHHhcccc------eeechhhhccchHHHHHHHH-hhhhhhhhhhhhhh
Confidence 4679999999999987644 66889999999999754 78888999999999999999 58899999999987
Q ss_pred hCCcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q psy11457 78 LNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAED----QHRLAEIQ 153 (315)
Q Consensus 78 ~~~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~----~~~L~~i~ 153 (315)
....-...+|.++|++|+||+.||||+|.++++.|+.++.|+..+..|...++.+...||+.++..|. ...+...+
T Consensus 461 ~~~~~~~~~L~s~l~~pvqri~kYPLll~elld~t~~~~~~~~~l~~a~~~m~~~~~~INe~~~~~e~~~~~~~~~~~~q 540 (756)
T KOG3519|consen 461 LLQQHSNSSLSSFLLKPVQRICKYPLLLNELLDSTPLESSDYVPLSAALPAMKTVASLINEMKRKLESYSSFLDKIAAEQ 540 (756)
T ss_pred hhhccccCCchhhhccHHHHhccCchhhhhhhhhccCCcchhhhhhhhhhhhhhHHHHHhhhhccccchhHHHHHhhhhh
Confidence 76655569999999999999999999999999999999999999999999999999999999999998 44444444
Q ss_pred hh---cCCCCCCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEec
Q psy11457 154 KR---LDRTPFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQ 217 (315)
Q Consensus 154 ~~---l~~~~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~ 217 (315)
.. ++.+ ++. + .++ ....++..|+..+.... .......+.|+|+..+++|++.
T Consensus 541 ~~~~~~~~~-----~~~----~-~~~-~Ss~l~~~~~~~~~~q~-~~~~~~~~~~l~~~~~~~c~~~ 595 (756)
T KOG3519|consen 541 SGSNSLELS-----EGE----L-LLD-NSSELLLSGPSLKIRQF-QSDSQQRQFFLFDNQLVYCKRS 595 (756)
T ss_pred ccchhhhcc-----CCC----c-ccc-cccceeeccchhhhhhh-hcchhhhhheecccceeEeecc
Confidence 44 2221 110 0 011 34667888888766531 1335688999999999999863
No 17
>KOG4240|consensus
Probab=99.63 E-value=1.1e-16 Score=162.80 Aligned_cols=222 Identities=22% Similarity=0.275 Sum_probs=158.0
Q ss_pred CHHHH-HHHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhC
Q psy11457 1 MLDIH-STFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELN 79 (315)
Q Consensus 1 ll~~H-~~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~ 79 (315)
|+++| ..||..|+..-..+ ..||++|+.|.+ .| .+|..||.|.+.+-.++... +.-+.|.. |+..
T Consensus 687 iy~fhn~~~L~eLe~y~~~p---E~Vg~~fle~~d-----~f-qly~~Yc~nke~S~ql~~~~-a~~~ff~e----~qr~ 752 (1025)
T KOG4240|consen 687 IYEFHNDIFLSELEKYEQLP---EDVGHCFLERAD-----DF-QLYAKYCQNKELSNQLIRLH-AGCSFFQE----IQRR 752 (1025)
T ss_pred HHHHHhhHHHHHhhhhccCH---HHHHHHHHHHHH-----HH-HHHHHHHhCCcchHHHHHhc-ccccccHH----HHHH
Confidence 57889 78999998876655 889999999973 45 99999999999999998776 34444443 3332
Q ss_pred CcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy11457 80 PLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRT 159 (315)
Q Consensus 80 ~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~ 159 (315)
....+.+.+||++|+||||||.|||+.+++...+ -...+..|++.|-.+...+|+.+.-..-. .+...|+..
T Consensus 753 -~~l~l~~~S~l~kpvqritkYqlllkell~~c~e---~~~~lkd~l~~ml~v~k~~nd~mh~~~~~----~~d~nl~~l 824 (1025)
T KOG4240|consen 753 -HGLELSISSYLIKPVQRITKYQLLLKELLKCCCE---GTGDLKDALEVMLSVPKKVNDSMHLIALE----GYDGNLDEL 824 (1025)
T ss_pred -hhhhhhhHHHHhHHHHHHHHHHHHHHHHHHhhhh---chHHHHHHHHHHHhhhhhcccccCHHHHh----hhhhhHHHH
Confidence 1234589999999999999999999999996544 46789999999999999999877543221 122222210
Q ss_pred CCCccCCcchhhhccccCCCceEEEEeeEEEEe--ecCCCcceEEEEEecCCcEEEEEec---CC--eeEEeCCCCCccc
Q psy11457 160 PFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRI--ATTRQKLIELYVLLLEDIIVLLQKQ---DD--SKSFDSPSNSCEA 232 (315)
Q Consensus 160 ~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~--~~~~~k~~~~~~fLf~d~Ll~~~~~---~~--k~~~k~~~~~~~~ 232 (315)
.++|.+|.+.... +-++ ++.++|+|||+--+|||++. ++ +|..+
T Consensus 825 --------------------g~~~~q~~f~vw~~k~l~r-k~~erhlfl~ei~ivf~K~~~~s~~~~~~~~~-------- 875 (1025)
T KOG4240|consen 825 --------------------GKLIMQDSFSVWKPKALAR-KGMERHLFLFEISIVFCKRIEESSERIKYVSK-------- 875 (1025)
T ss_pred --------------------HHHHhhccceeecHHHHhh-hhHHHHHHHHHHHHHHHHHHHhccCCCcchhh--------
Confidence 2345555555332 2235 78899999999999999962 22 22222
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCccccccccCcccccccc-ccccCceEEEEEcCCCCCeeEEEEcCCc
Q psy11457 233 VSSSGPPPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQE-VINDRSALYLVNTSQHSAQIYDLVASSA 311 (315)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~-~~~~~~~~~li~~~~~~~~~~~l~a~s~ 311 (315)
..++ + .|+-|-+ |-.|.+.|-+.+... +..|.+.|++.
T Consensus 876 ---------------------------~~l~-------~-----~e~gite~v~Gd~~kf~~~~g~~--~~~~~~~a~~~ 914 (1025)
T KOG4240|consen 876 ---------------------------KKLP-------M-----SEVGITEHVEGDPCKFELWVGRT--ESVIDLKASNH 914 (1025)
T ss_pred ---------------------------ccCC-------H-----HhhcchhhcccCceEEEEeccCC--CcceeeecCCc
Confidence 1122 2 2224444 668999999998874 55899999998
Q ss_pred ccc
Q psy11457 312 SER 314 (315)
Q Consensus 312 ~er 314 (315)
+-|
T Consensus 915 ~~K 917 (1025)
T KOG4240|consen 915 ETK 917 (1025)
T ss_pred chh
Confidence 754
No 18
>KOG3524|consensus
Probab=99.55 E-value=4.5e-15 Score=144.26 Aligned_cols=165 Identities=19% Similarity=0.323 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCCcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchh
Q psy11457 39 EAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENE 118 (315)
Q Consensus 39 ~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e 118 (315)
+.+.++|-.|.+-+...-+++..|-+.+++|.+|++.-++.|.|+|++|.+.++.|+||++--.|||++|+| + .+.++
T Consensus 463 ~el~kayppyvnffet~ke~~~~cdre~prfhaflKinq~kpecgRq~l~dlmirpvqrlpsvilllndl~k-~-s~N~d 540 (850)
T KOG3524|consen 463 EELKKAYPPYVNFFETIKELFDKCDRENPRFHAFLKINQSKPECGRQKLTDLMIRPVQRLPSVILLLNDMAK-K-SDNKD 540 (850)
T ss_pred HHHHHhccchhhHHHHhHHHHHHHhccchHHHHHHHccccchhhhhhcccchhccchhhhhHHHHHHHHHHh-h-ccCcc
Confidence 567899999999999999999999999999999999999999999999999999999999999999999999 3 45689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCcchhhhccccCCCceEEEEeeEE-EEeecCCC
Q psy11457 119 LTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTRHKLIYEGNLQ-LRIATTRQ 197 (315)
Q Consensus 119 ~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~-~~~~~~~~ 197 (315)
+..+++|+..++++..+||+-++.+|+.....+.-.-+++.|-..+. .+|.++.+-.+. .....+-.
T Consensus 541 k~~leea~kaikev~khInedKrkte~~~~ifdkf~diegcpa~lvs------------snrsfi~~lev~i~l~~~~~~ 608 (850)
T KOG3524|consen 541 KNNLEEAAKAIKEVLKHINEDKRKTENFISIFDKFTDIEGCPAILVS------------SNRSFIRELEVSIALTSPGLQ 608 (850)
T ss_pred hhhHHHhhhhHHHHHHHhchhHHHHHHHHHHHHHHHhhhcCchhhee------------ccchHHHHhhhhhhhcCcccc
Confidence 99999999999999999999999999999888888888876522221 246666655543 12222233
Q ss_pred cceEEEEEecCCcEEEEEec
Q psy11457 198 KLIELYVLLLEDIIVLLQKQ 217 (315)
Q Consensus 198 k~~~~~~fLf~d~Ll~~~~~ 217 (315)
....+.+|||+|++++|++.
T Consensus 609 rg~~~~l~lf~dvlei~k~r 628 (850)
T KOG3524|consen 609 RGAKMKLFLFHDVLEITKIR 628 (850)
T ss_pred cccceeeehhhhHHHHHHHh
Confidence 35589999999999999875
No 19
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.25 E-value=2.1e-11 Score=93.51 Aligned_cols=83 Identities=13% Similarity=0.231 Sum_probs=68.4
Q ss_pred ceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecCCeeEEeCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy11457 180 HKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEAEPDP 259 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 259 (315)
..|+.||++.+..+ ..++|+|||+++||+|++.+++|.+|
T Consensus 2 geLlleg~l~~~~~-----~~eR~vFLFe~~ll~~K~~~~~y~~K----------------------------------- 41 (97)
T cd01222 2 GDLLLEGRFREHGG-----GKPRLLFLFQTMLLIAKPRGDKYQFK----------------------------------- 41 (97)
T ss_pred CceeeeceEEeecC-----CCceEEEEecccEEEEEecCCeeEEE-----------------------------------
Confidence 35899999986543 44899999999999999999999999
Q ss_pred CCccCCCccccccccCcccccccccc-ccCceEEEEEcCCCCCeeEEEEcCCccccC
Q psy11457 260 PDWTKSVPEDILRSLSPREKKRQEVI-NDRSALYLVNTSQHSAQIYDLVASSASERK 315 (315)
Q Consensus 260 ~~i~~~~~~~~l~~l~~~~~~~r~~~-~~~~~~~li~~~~~~~~~~~l~a~s~~erk 315 (315)
..|. +++| .+.+.. .|+.+|.+++.. ++...|++.|+|+++|+
T Consensus 42 ~~i~-------~~~l-----~i~e~~~~d~~~F~v~~~~-~p~~~~~l~A~s~e~K~ 85 (97)
T cd01222 42 AYIP-------CKNL-----MLVEHLPGEPLCFRVIPFD-DPKGALQLTARNREEKR 85 (97)
T ss_pred EEEE-------ecce-----EEecCCCCCCcEEEEEecC-CCceEEEEEecCHHHHH
Confidence 5688 9999 777755 578888887775 22358999999999873
No 20
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.17 E-value=6.5e-11 Score=93.04 Aligned_cols=85 Identities=16% Similarity=0.269 Sum_probs=64.7
Q ss_pred ceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecCC----------eeEEeCCCCCccccCCCCCCCCCCCCCCCC
Q psy11457 180 HKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDD----------SKSFDSPSNSCEAVSSSGPPPPSSSSRVPW 249 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~~----------k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (315)
+.||+||.|++... ++.+.+++|+|||||+||+|+++.. +|.++
T Consensus 2 ~elI~EG~L~ki~~-~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k------------------------- 55 (112)
T cd01261 2 NEFIMEGTLTRVGP-SKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLK------------------------- 55 (112)
T ss_pred ccccccCcEEEEec-ccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEE-------------------------
Confidence 46899999997663 2455789999999999999997544 57777
Q ss_pred CCCCCCCCCCCCccCCCccccccccCccccccccccc---cCceEEEEEcCCCCCeeEEEEcCCccccC
Q psy11457 250 DSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVIN---DRSALYLVNTSQHSAQIYDLVASSASERK 315 (315)
Q Consensus 250 ~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~---~~~~~~li~~~~~~~~~~~l~a~s~~erk 315 (315)
..+. |.++ -|.+..+ -+++|.|++.. ...|+|+|.|++||+
T Consensus 56 ----------~~~~-------l~~~-----~V~d~~d~~~~knaF~I~~~~---~~s~~l~Akt~eeK~ 99 (112)
T cd01261 56 ----------EKFF-------MRKV-----DINDKPDSSEYKNAFEIILKD---GNSVIFSAKNAEEKN 99 (112)
T ss_pred ----------EEEe-------eeee-----EEEEcCCCcccCceEEEEcCC---CCEEEEEECCHHHHH
Confidence 5677 7777 6666553 25788887653 237999999999984
No 21
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.08 E-value=5.4e-10 Score=86.30 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=62.4
Q ss_pred eEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEec---CCeeEEeCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy11457 181 KLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQ---DDSKSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEAEP 257 (315)
Q Consensus 181 ~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~---~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 257 (315)
+||+||.|.+... .+.+++++|||||+||+|.+. +++|.+.
T Consensus 1 ~~ikEG~L~K~~~---k~~~~R~~FLFnD~LlY~~~~~~~~~~y~~~--------------------------------- 44 (99)
T cd01220 1 EFIRQGCLLKLSK---KGLQQRMFFLFSDLLLYTSKSPTDQNSFRIL--------------------------------- 44 (99)
T ss_pred CeeeEEEEEEEeC---CCCceEEEEEccceEEEEEeecCCCceEEEE---------------------------------
Confidence 3899999987653 457899999999999999974 2467766
Q ss_pred CCCCccCCCccccccccCcccccccccccc---CceEEEEEcCCCCCeeEEEEcCCccccC
Q psy11457 258 DPPDWTKSVPEDILRSLSPREKKRQEVIND---RSALYLVNTSQHSAQIYDLVASSASERK 315 (315)
Q Consensus 258 ~~~~i~~~~~~~~l~~l~~~~~~~r~~~~~---~~~~~li~~~~~~~~~~~l~a~s~~erk 315 (315)
.+|+ |..+ .|+++.++ +.+|- |.+. ..-|.|.|+|++||.
T Consensus 45 --~~i~-------L~~~-----~V~~~~~~~~~~~~F~-I~~~---~ks~~l~A~s~~Ek~ 87 (99)
T cd01220 45 --GHLP-------LRGM-----LTEESEHEWGVPHCFT-IFGG---QCAITVAASTRAEKE 87 (99)
T ss_pred --EEEE-------cCce-----EEeeccCCcCCceeEE-EEcC---CeEEEEECCCHHHHH
Confidence 6899 9999 89887653 34444 4432 457999999999983
No 22
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.08 E-value=4.5e-10 Score=87.31 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=64.2
Q ss_pred CceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEe--cCCeeEEeCCCCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q psy11457 179 RHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQK--QDDSKSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEAE 256 (315)
Q Consensus 179 ~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~--~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 256 (315)
+|.||+||.|+... +.+.+++++|||||+||++.. .+.+|.+.
T Consensus 1 gR~li~eG~L~K~~---rk~~~~R~ffLFnD~LvY~~~~~~~~~~~~~-------------------------------- 45 (104)
T cd01218 1 GRVLVGEGVLTKMC---RKKPKQRQFFLFNDILVYGNIVISKKKYNKQ-------------------------------- 45 (104)
T ss_pred CCEEEecCcEEEee---cCCCceEEEEEecCEEEEEEeecCCceeeEe--------------------------------
Confidence 38999999998665 556788999999999999986 33456665
Q ss_pred CCCCCccCCCccccccccCccccccccccccC--ceEEEEEcCCCCCeeEEEEcCCccccC
Q psy11457 257 PDPPDWTKSVPEDILRSLSPREKKRQEVINDR--SALYLVNTSQHSAQIYDLVASSASERK 315 (315)
Q Consensus 257 ~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~~~--~~~~li~~~~~~~~~~~l~a~s~~erk 315 (315)
.+++ |..+ .|++..++. +.-|.|.+. +.-|.+.|+|++||.
T Consensus 46 ---~~i~-------L~~~-----~v~~~~d~~~~~n~f~I~~~---~kSf~v~A~s~~eK~ 88 (104)
T cd01218 46 ---HILP-------LEGV-----QVESIEDDGIERNGWIIKTP---TKSFAVYAATETEKR 88 (104)
T ss_pred ---eEEE-------ccce-----EEEecCCcccccceEEEecC---CeEEEEEcCCHHHHH
Confidence 5788 8888 888776532 334555552 668999999999973
No 23
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.01 E-value=2.1e-09 Score=84.86 Aligned_cols=88 Identities=19% Similarity=0.198 Sum_probs=69.5
Q ss_pred ceEEEEeeEEEEeecC--CCcceEEEEEecCCcEEEEEec-------CCeeEEeCCCCCccccCCCCCCCCCCCCCCCCC
Q psy11457 180 HKLIYEGNLQLRIATT--RQKLIELYVLLLEDIIVLLQKQ-------DDSKSFDSPSNSCEAVSSSGPPPPSSSSRVPWD 250 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~--~~k~~~~~~fLf~d~Ll~~~~~-------~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (315)
.+|+.+|.+....+.. +.|+.++|+|||+|+||+|+.. .+.|+||
T Consensus 3 G~Ll~Q~~f~v~~~~~~~~~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK-------------------------- 56 (114)
T cd01232 3 GKLLLQDTFQVWDPKAGLIQKGRERRVFLFEQSIIFAKEVKKKKQFGNPKYIYK-------------------------- 56 (114)
T ss_pred CceEEEccEEEEeCCccccCCCceeEEEEeeceEEEEEEeccCCCCCceeEEEe--------------------------
Confidence 4588999987666521 3578899999999999999963 2378888
Q ss_pred CCCCCCCCCCCccCCCccccccccCcccccccccc-ccCceEEEEEcCCC-CCeeEEEEcCCcccc
Q psy11457 251 SDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVI-NDRSALYLVNTSQH-SAQIYDLVASSASER 314 (315)
Q Consensus 251 ~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~-~~~~~~~li~~~~~-~~~~~~l~a~s~~er 314 (315)
..|+ ++.| .+.|.. .|...|-+.+..+. ....|.+.|+|+++|
T Consensus 57 ---------~~ik-------ls~l-----~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K 101 (114)
T cd01232 57 ---------SKLQ-------VSKM-----GLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETK 101 (114)
T ss_pred ---------ccee-------eeee-----EeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHH
Confidence 5688 8888 888755 78888888888754 347999999999986
No 24
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.93 E-value=3.2e-09 Score=82.44 Aligned_cols=85 Identities=15% Similarity=0.225 Sum_probs=65.1
Q ss_pred eEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEe---cCCeeEEeCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy11457 181 KLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQK---QDDSKSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEAEP 257 (315)
Q Consensus 181 ~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~---~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 257 (315)
+|||+|++++... .+++.+++++|||+..||+|++ +++.|.+|
T Consensus 1 eli~~Gel~~~s~-~~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yK--------------------------------- 46 (109)
T cd01224 1 ELFLQGEATRQKQ-NKGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYK--------------------------------- 46 (109)
T ss_pred CceEeeeEEEEec-ccCCcccEEEEEecceEEEEecccccCCcEEEE---------------------------------
Confidence 3899999997663 2345679999999999999995 57789999
Q ss_pred CCCCccCCCccccccccCcccccccccccc---------CceEEEEEcCCCCCeeEEEEcCCccccC
Q psy11457 258 DPPDWTKSVPEDILRSLSPREKKRQEVIND---------RSALYLVNTSQHSAQIYDLVASSASERK 315 (315)
Q Consensus 258 ~~~~i~~~~~~~~l~~l~~~~~~~r~~~~~---------~~~~~li~~~~~~~~~~~l~a~s~~erk 315 (315)
.-|. ++.+ -|.++.++ ++||.|++.+ +-..|++.|.|+|||+
T Consensus 47 --gri~-------l~~~-----~I~d~~Dg~~~~~~~~~knafkl~~~~--~~~~~~f~~Kt~e~K~ 97 (109)
T cd01224 47 --GRID-------LDRC-----EVVNIRDGKMFSSGHTIKNSLKIYSES--TDEWYLFSFKSAERKH 97 (109)
T ss_pred --EEEE-------cccE-----EEEECCCCccccCCceeEEEEEEEEcC--CCeEEEEEECCHHHHH
Confidence 3455 5555 55554322 5899999996 5668999999999873
No 25
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.89 E-value=6e-09 Score=80.89 Aligned_cols=82 Identities=16% Similarity=0.238 Sum_probs=60.8
Q ss_pred EEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEec----CCeeEEeCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy11457 182 LIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQ----DDSKSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEAEP 257 (315)
Q Consensus 182 Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~----~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 257 (315)
||+||.|.+... ...+.+++|+|||||+|++|+.+ +++|.++
T Consensus 2 ~ikeG~L~K~~~-~~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~--------------------------------- 47 (101)
T cd01219 2 LLKEGSVLKISS-TTEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVR--------------------------------- 47 (101)
T ss_pred cccceEEEEEec-CCCCceeEEEEEeCCEEEEEEcccccCCCcEEEE---------------------------------
Confidence 789999986654 23457899999999999999964 5678887
Q ss_pred CCCCccCCCccccccccCcccccccccc--ccCceEEEEEcCCCCCeeEEEEcCCccccC
Q psy11457 258 DPPDWTKSVPEDILRSLSPREKKRQEVI--NDRSALYLVNTSQHSAQIYDLVASSASERK 315 (315)
Q Consensus 258 ~~~~i~~~~~~~~l~~l~~~~~~~r~~~--~~~~~~~li~~~~~~~~~~~l~a~s~~erk 315 (315)
..|+ |..+ .|.+.. +.+.+|.| .+. ...|++.|.|++||.
T Consensus 48 --~~i~-------l~~~-----~v~~~~~~~~~~~F~I-~~~---~rsf~l~A~s~eEk~ 89 (101)
T cd01219 48 --ARID-------VSGM-----QVCEGDNLERPHSFLV-SGK---QRCLELQARTQKEKN 89 (101)
T ss_pred --EEEe-------cccE-----EEEeCCCCCcCceEEE-ecC---CcEEEEEcCCHHHHH
Confidence 5688 8888 777653 23455555 443 258999999999983
No 26
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.79 E-value=2.8e-08 Score=80.33 Aligned_cols=85 Identities=20% Similarity=0.333 Sum_probs=65.1
Q ss_pred eEEEEeeEEEEeecC---------CCcceEEEEEecCCcEEEEEec---CC-----eeEEeCCCCCccccCCCCCCCCCC
Q psy11457 181 KLIYEGNLQLRIATT---------RQKLIELYVLLLEDIIVLLQKQ---DD-----SKSFDSPSNSCEAVSSSGPPPPSS 243 (315)
Q Consensus 181 ~Li~eG~l~~~~~~~---------~~k~~~~~~fLf~d~Ll~~~~~---~~-----k~~~k~~~~~~~~~~~~~~~~~~~ 243 (315)
+|+.+|.++...+.. +.|+.++|+|||+.++|+|++. ++ .|.||
T Consensus 2 ~ll~Qd~f~Vw~~~~~~~~~k~~~r~K~~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK------------------- 62 (133)
T cd01227 2 KLLMQGSFSVWTDHKKGHTKKELARFKPMQRHIFLHEKAVLFCKKREENGEGEKAPSYSFK------------------- 62 (133)
T ss_pred CceEecceEEEEccccccchhhhhccCCceeEEEEecceEEEEEEeccCCCCCcceeEEEe-------------------
Confidence 367788876544311 3467899999999999999964 22 68888
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCccccccccCcccccccc-ccccCceEEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 244 SSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQE-VINDRSALYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 244 ~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~-~~~~~~~~~li~~~~~~~~~~~l~a~s~~er 314 (315)
..|. ++.+ -+.| +.+|.+.|-+.+.. +++.|.|+|+|++.|
T Consensus 63 ----------------~~ik-------ls~l-----glte~v~gd~~kFeiw~~~--~~~~yilqA~t~e~K 104 (133)
T cd01227 63 ----------------QSLK-------MTAV-----GITENVKGDTKKFEIWYNA--REEVYILQAPTPEIK 104 (133)
T ss_pred ----------------eeEE-------eecc-----cccccCCCCccEEEEEeCC--CCcEEEEEcCCHHHH
Confidence 4688 8888 7766 45677888888875 588999999999876
No 27
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.78 E-value=4e-08 Score=78.43 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=36.0
Q ss_pred ceEEEEeeEEEEeecC-------CCcceEEEEEecCCcEEEEEec-CCeeEEe
Q psy11457 180 HKLIYEGNLQLRIATT-------RQKLIELYVLLLEDIIVLLQKQ-DDSKSFD 224 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~-------~~k~~~~~~fLf~d~Ll~~~~~-~~k~~~k 224 (315)
|+|+.+|+|+.....+ +.+..++|+|||||+||+|+++ +++|.+.
T Consensus 1 RwLvK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~~f~V~ 53 (125)
T cd01221 1 RWLVKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGSTFVVF 53 (125)
T ss_pred CceEEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCCeEEEE
Confidence 7899999999765421 1235799999999999999875 7899886
No 28
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.56 E-value=1.5e-07 Score=73.79 Aligned_cols=85 Identities=14% Similarity=0.286 Sum_probs=62.4
Q ss_pred eEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecCCe-----eEEeCCCCCccccCCCCCCCCCCCCCCCCCCCCCC
Q psy11457 181 KLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDS-----KSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEA 255 (315)
Q Consensus 181 ~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~~k-----~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 255 (315)
++..+|+|..+.- .+.+.+++|+|||+-++|+|+++++. |.||
T Consensus 3 R~~~DGelk~k~~-~~~k~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~K------------------------------- 50 (116)
T cd01223 3 RPLLDGEVRIKAS-EDQKTKLRYIFLFDKAVIVCKALGDNTGDMQYTYK------------------------------- 50 (116)
T ss_pred ccccCCceEEeEe-ccCCCceeEEEEecceEEEEEecCCCCCCccEEhH-------------------------------
Confidence 3677899877664 35668899999999999999988776 9999
Q ss_pred CCCCCCccCCCccccccccCcccccccccc---c------cCceEEEEEcCCCCCeeEEEEcCCccccC
Q psy11457 256 EPDPPDWTKSVPEDILRSLSPREKKRQEVI---N------DRSALYLVNTSQHSAQIYDLVASSASERK 315 (315)
Q Consensus 256 ~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~---~------~~~~~~li~~~~~~~~~~~l~a~s~~erk 315 (315)
..+. |+.. -|++.. . =..+|+|+... +..-|++.|.|+|||+
T Consensus 51 ----e~~~-------l~~~-----~I~~~~~~d~~~~~~~~~~~f~L~~~~--~~~~~~f~~Ktee~K~ 101 (116)
T cd01223 51 ----DIHD-------LADY-----KIENNPSRDTEGRDTRWKYGFYLAHKQ--GKTGFTFYFKTEHLRK 101 (116)
T ss_pred ----Hhhh-------hhee-----eeEecCccCcccCCcceEEEEEEEecC--CCccEEEEeCCHHHHH
Confidence 3344 5554 444432 1 12588898874 4456999999999985
No 29
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.33 E-value=1.4e-06 Score=66.74 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=60.3
Q ss_pred EEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEe-cCCeeEEeCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy11457 182 LIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQK-QDDSKSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEAEPDPP 260 (315)
Q Consensus 182 Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~-~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 260 (315)
+|++|.+.-...........+++|||||+||++.. ...+|.+. .
T Consensus 2 ~i~~G~l~e~~~~~~kp~~rv~~FLfND~Lvva~~~~~~ky~~~-----------------------------------~ 46 (100)
T cd01226 2 VILYGELEEFDVETKKPVQRVMLFLLNDRLIVGNINAAGKYVME-----------------------------------S 46 (100)
T ss_pred EEEcCcEEEechhhCCccceEEEEEeccEEEEEEecccceEEEE-----------------------------------E
Confidence 68999997655422333457789999999999975 35688877 5
Q ss_pred CccCCCccccccccCccccccccccccC--ceEEEEEcCCCCCeeEEEEcCCccccC
Q psy11457 261 DWTKSVPEDILRSLSPREKKRQEVINDR--SALYLVNTSQHSAQIYDLVASSASERK 315 (315)
Q Consensus 261 ~i~~~~~~~~l~~l~~~~~~~r~~~~~~--~~~~li~~~~~~~~~~~l~a~s~~erk 315 (315)
.++ |.++ .|.++..++ +-.|.|.+. |..+...|.|+++|+
T Consensus 47 ~~~-------L~~i-----~V~ni~D~~~~kNafki~t~---~~s~i~qaes~~~K~ 88 (100)
T cd01226 47 TYS-------LNSV-----AVVNVKDRENAKKVLKLLIF---PESRIYQCESARIKT 88 (100)
T ss_pred EEe-------hHHe-----EEEecCCCcCcCceEEEEeC---CccEEEEeCCHHHHH
Confidence 688 8888 887766422 344455553 667889999998874
No 30
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.19 E-value=1.6e-06 Score=65.22 Aligned_cols=77 Identities=14% Similarity=0.165 Sum_probs=54.0
Q ss_pred ceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEec---C---CeeEEeCCCCCccccCCCCCCCCCCCCCCCCCCCC
Q psy11457 180 HKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQ---D---DSKSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDT 253 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~---~---~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 253 (315)
|.|+.||-|.... +++.+.+++|||||+||+++-+ + ++|..+
T Consensus 1 r~Lv~eg~lvel~---~~~rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~----------------------------- 48 (96)
T cd01228 1 RQLVKDSFLVELV---EGSRKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCK----------------------------- 48 (96)
T ss_pred Ccccccceeeeeh---hCCCcceEEEeeccEEEEEEeeeccCcccccccee-----------------------------
Confidence 6789999988555 4556799999999999999832 2 345444
Q ss_pred CCCCCCCCccCCCccccccccCccccccccccccCceEEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 254 EAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 254 ~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~~~~~~~li~~~~~~~~~~~l~a~s~~er 314 (315)
-+|+ |..+ -+.+.+ |-+. +.+ --.|.+.|+|..||
T Consensus 49 ------w~IP-------L~dl-----~~~~~~------~~~~-~~~-~KSf~~~asS~~Er 83 (96)
T cd01228 49 ------WYIP-------LADL-----SFPSEP------FRIH-NKN-GKSYTFLLSSDYER 83 (96)
T ss_pred ------EEEE-------hHHh-----eecchh------hhcc-ccC-CceEEEEecCHHHH
Confidence 4788 8888 666654 2222 111 33688999998887
No 31
>KOG4269|consensus
Probab=98.07 E-value=2.4e-06 Score=86.21 Aligned_cols=181 Identities=14% Similarity=0.148 Sum_probs=137.5
Q ss_pred CHHHHHHHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHh--HHHHHHHHHHHHhcChHHHHHHHHHHh
Q psy11457 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSR--QQIALESLRERRRKDSRLNAFLTEAEL 78 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~--~~~a~~~l~~~~~~~~~f~~fl~~~e~ 78 (315)
|+++|..|...|..+.+.|......|+.|..-.+ ....|..|..+ |..|+..-..|.+-++.|+.-=.+.-.
T Consensus 387 i~~~hk~~~~~l~pk~q~~~sqs~~~~~~~~L~S------~l~n~~af~~~~sy~~al~~~~~~~sss~qfq~i~~~~~~ 460 (1112)
T KOG4269|consen 387 IYEIHKEFYDNLHPKVQQWKSQSNSGGLFQKLAS------QLGNYLAFVDNESYLVALEMAEKCASSSPQFQCISEQLVV 460 (1112)
T ss_pred chhhhhhhccccCchhhhhhhhhccCccchhhhh------hcchhhhhhcchhhhhhcccccchhhcchhhhhhhhhhee
Confidence 6899999999999999999888899998888764 34889999999 999999999998889998854332211
Q ss_pred ------CCcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHH----------HHHHHHHHHHHHHHHHHHHHHH
Q psy11457 79 ------NPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELT----------KVKRALDRSKEILNYVNQAVKE 142 (315)
Q Consensus 79 ------~~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~----------~l~~Al~~ik~i~~~vn~~~~~ 142 (315)
.-.....+..-.|.+|+-|.++.-+-|.++||++|-.|||+- .++.|++....++..+|+....
T Consensus 461 ~~n~~s~~sst~~~~~~~l~rpi~~~~ss~~s~~~~lk~ppf~~pd~f~~~~~~i~~~Llrda~d~~~~~is~id~k~~~ 540 (1112)
T KOG4269|consen 461 GVNKDSKDSSTWKDEEWLLYRPIDRVTSSTLSLHDLLKHPPFPHPDWFTNDSSVIQNELLRDALDISQNFISSIDEKIEP 540 (1112)
T ss_pred cccccccccCCccchhhhhccchhhhhHHHHHHHHHhCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHhhcccch
Confidence 111123456668999999999999999999999999999998 8999999999999999876543
Q ss_pred HHHHHHHHHHHhhcCCCCCCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEE
Q psy11457 143 AEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQ 215 (315)
Q Consensus 143 ~e~~~~L~~i~~~l~~~~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~ 215 (315)
. ++.++-.+. ..|++++++-..-... ....-+++|+|++.|++++
T Consensus 541 ~----r~~~f~ks~---------------------~~rq~L~d~f~~~v~~---~~~~~~~~~~~~~~ll~tk 585 (1112)
T KOG4269|consen 541 R----RLLEFLKSG---------------------ELRQLLKDVFFVEVEE---AQRKLRHVFLFTNSLLCTK 585 (1112)
T ss_pred h----hhhhhcccc---------------------hhHhhhhhheeecccc---ccccchhhHHHhhccchhh
Confidence 1 222111111 1277888776553332 1234899999999999997
No 32
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=96.98 E-value=0.00095 Score=54.46 Aligned_cols=46 Identities=20% Similarity=0.448 Sum_probs=20.9
Q ss_pred EEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEec----CCee-EEeCCCC
Q psy11457 182 LIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQ----DDSK-SFDSPSN 228 (315)
Q Consensus 182 Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~----~~k~-~~k~~~~ 228 (315)
||++|.|..+.+. .....++++|||+++||+++.+ ..+| +++.||+
T Consensus 1 Li~~G~L~Rk~~~-~~~~~di~~~LFDh~Lll~K~k~~~k~e~ykV~r~PIP 51 (135)
T PF15405_consen 1 LIYKGDLKRKGDN-SFNWVDIHVYLFDHYLLLTKPKKVNKREQYKVYRRPIP 51 (135)
T ss_dssp -----------------S-EEEEEEESSEEEEEEEEEETTEEEEEESS--EE
T ss_pred Ccccccccccccc-ccccceeEEEeeccEEEEEEEEecCCeEEEEEEECCcC
Confidence 6899999865542 2234599999999999999853 2356 5557765
No 33
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=96.62 E-value=0.0076 Score=44.51 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=28.4
Q ss_pred EEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecCC
Q psy11457 183 IYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDD 219 (315)
Q Consensus 183 i~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~~ 219 (315)
+++|.|..+...+....+.++++|+++.|.+.+....
T Consensus 2 ~~~G~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~ 38 (102)
T smart00233 2 IKEGWLYKKSGGKKKSWKKRYFVLFNSTLLYYKSEKA 38 (102)
T ss_pred ceeEEEEEeCCCccCCceEEEEEEECCEEEEEeCCCc
Confidence 5788888665423456789999999999999986544
No 34
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=96.51 E-value=0.009 Score=44.86 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=29.4
Q ss_pred EEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecCC
Q psy11457 182 LIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDD 219 (315)
Q Consensus 182 Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~~ 219 (315)
.+++|.|..+. .+..+.+.++++|+++.|++.+..+.
T Consensus 1 ~~~~G~L~~~~-~~~~~wk~r~~vL~~~~L~~~~~~~~ 37 (104)
T PF00169_consen 1 CIKEGWLLKKS-SSRKKWKKRYFVLRDSYLLYYKSSKD 37 (104)
T ss_dssp EEEEEEEEEEE-SSSSSEEEEEEEEETTEEEEESSTTT
T ss_pred CEEEEEEEEEC-CCCCCeEEEEEEEECCEEEEEecCcc
Confidence 37899998776 33566889999999999999886553
No 35
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=96.47 E-value=0.0042 Score=50.22 Aligned_cols=110 Identities=16% Similarity=0.200 Sum_probs=68.8
Q ss_pred CCceEEEEeeEEEEee---cCC-CcceEEEEEecCCcEEEEEecCCeeEEeCCCCCccccCCCCCCCCCCCCCCCCCCCC
Q psy11457 178 TRHKLIYEGNLQLRIA---TTR-QKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDT 253 (315)
Q Consensus 178 ~~R~Li~eG~l~~~~~---~~~-~k~~~~~~fLf~d~Ll~~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 253 (315)
.-..|+..+.+.|... -|+ .|..+..+|.|...+|+.-+.+.|.-=|-+++ ++.....+.
T Consensus 23 smgdLL~h~~v~WLNp~~slgk~kKe~e~~~FVFK~AVVlv~ke~~K~KkKl~~~----------------~r~~~~~e~ 86 (160)
T cd01255 23 SPGDLLYHGGVEWLNPSDSLGKIKKELELMCFVFKSAVVLVYKERLKQKKKLMGV----------------SRKNATNEV 86 (160)
T ss_pred CHHHhhhhcceeeecCChhhccccCCceEEEEEecceEEEEEcCcchhhhccccc----------------ccccccccc
Confidence 3355778888889774 232 34678999999999988877555433231110 111223445
Q ss_pred CCCCCCCCccCCCccccccccCcccccccccc-ccCc--e-EEEEEcC---CCCCe-eEEEEcCCccccC
Q psy11457 254 EAEPDPPDWTKSVPEDILRSLSPREKKRQEVI-NDRS--A-LYLVNTS---QHSAQ-IYDLVASSASERK 315 (315)
Q Consensus 254 ~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~-~~~~--~-~~li~~~---~~~~~-~~~l~a~s~~erk 315 (315)
|.-.+.-.|+ ...| .||..+ +|.. + +-||.+. +..|+ +|.|+++|+|-|+
T Consensus 87 dp~rfr~miP-------~~al-----QVR~~n~ad~e~~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~ 144 (160)
T cd01255 87 DPFRFRVLIP-------VTAL-----QVRASSAADMESNFLWELIHLKSELEGRPEKVFVLCCSTAESRN 144 (160)
T ss_pred CceeEEEeec-------eeee-----eeecCCCcCcccceEEEEEeecccccCCCcceEEEecCCHHHHH
Confidence 5555666888 8888 999855 3333 3 3344333 23477 9999999998764
No 36
>KOG0931|consensus
Probab=95.49 E-value=0.032 Score=53.39 Aligned_cols=105 Identities=13% Similarity=0.158 Sum_probs=65.2
Q ss_pred HHHHHHhhCC----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCcchhhhccccCCC
Q psy11457 104 LFANLAKYTV----DNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTR 179 (315)
Q Consensus 104 LL~~llk~T~----~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~~~~~~~~~~~~~~~~l~l~~ 179 (315)
.|++.+|+.- ....+++.|..-++.|+.---.-| .+....++...+.|.++.. + .+.+++
T Consensus 351 ~leDFikNLRGvDnGeDIpRell~GIYeRIqk~ELktn-----dDHVsqVqkVer~IVGkk~-----~------vLs~ph 414 (627)
T KOG0931|consen 351 KLEDFIKNLRGVDNGEDIPRELLVGIYERIQKRELKTN-----DDHVSQVQKVERAIVGKKP-----P------VLSLPH 414 (627)
T ss_pred hHHHHHHhccCCCCcccCcHHHHHHHHHHHHHhhcccC-----cchHHHHHHHHHHHhcCCC-----c------ccccCC
Confidence 4566666643 222456667766666643211111 1344566677777886521 1 345688
Q ss_pred ceEEEEeeEEEEeecCC---CcceEEEEEecCCcEEEEE---e--cCCeeEEe
Q psy11457 180 HKLIYEGNLQLRIATTR---QKLIELYVLLLEDIIVLLQ---K--QDDSKSFD 224 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~~---~k~~~~~~fLf~d~Ll~~~---~--~~~k~~~k 224 (315)
|+|++--.|.-+...++ ....++-+|||||+||+++ + ..-.|.|+
T Consensus 415 RRLVC~crL~eV~Dpnk~Qk~~ahqReVFLFNDllVV~K~~~kkk~s~TYtf~ 467 (627)
T KOG0931|consen 415 RRLVCYCRLFEVPDPNKPQKLGAHQREVFLFNDLLVVTKIFQKKKTSVTYTFR 467 (627)
T ss_pred ceEEEEEeeeecCCCCchhhcccccceeeeecchhhhhhhhccCcceeEeehh
Confidence 99999988886664222 2246899999999999997 2 23367777
No 37
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.32 E-value=0.028 Score=40.95 Aligned_cols=82 Identities=22% Similarity=0.331 Sum_probs=50.1
Q ss_pred EeeEEEEeecCCCcceEEEEEecCCcEEEEEecCCeeEEeCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccC
Q psy11457 185 EGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEAEPDPPDWTK 264 (315)
Q Consensus 185 eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~ 264 (315)
+|.|..+..........++++|+++.|.++....+.. -..| ..+|+
T Consensus 2 ~G~l~~~~~~~~~~w~~~~~~L~~~~l~~~~~~~~~~-~~~~--------------------------------~~~i~- 47 (96)
T cd00821 2 EGYLLKKTGKLRKGWKRRWFVLFNDLLLYYKKKSSKK-SYKP--------------------------------KGSIP- 47 (96)
T ss_pred cchhhhhhChhhCCccEEEEEEECCEEEEEECCCCCc-CCCC--------------------------------cceEE-
Confidence 4555543321113467999999999999997654321 0100 04566
Q ss_pred CCccccccccCcccccccccccc---CceEEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 265 SVPEDILRSLSPREKKRQEVIND---RSALYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 265 ~~~~~~l~~l~~~~~~~r~~~~~---~~~~~li~~~~~~~~~~~l~a~s~~er 314 (315)
|... .+...... ..+|.|+..+ .+.|.+.|.|.+|+
T Consensus 48 ------l~~~-----~v~~~~~~~~~~~~f~i~~~~---~~~~~~~~~s~~~~ 86 (96)
T cd00821 48 ------LSGA-----EVEESPDDSGRKNCFEIRTPD---GRSYLLQAESEEER 86 (96)
T ss_pred ------cCCC-----EEEECCCcCCCCcEEEEecCC---CcEEEEEeCCHHHH
Confidence 6666 56555543 4556555443 27899999998875
No 38
>cd01229 PH_etc2 Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.84 E-value=0.036 Score=43.47 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=30.4
Q ss_pred CceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecCCe-eEEeCC
Q psy11457 179 RHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDS-KSFDSP 226 (315)
Q Consensus 179 ~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~~k-~~~k~~ 226 (315)
+|.|+..-++.-.....-+++-.+.+|||+|.|=+|+++..- -.+|+|
T Consensus 5 hRs~v~r~e~~eL~d~l~grGe~~tlFLfsD~lEi~kkR~kv~~~~KSP 53 (129)
T cd01229 5 HRSLVQRVETISLGEHLCDRGEQVTLFLFNDCLEIARKRHKVIGTFKSP 53 (129)
T ss_pred hhhhhheeeeeeecccccCCCCeEEEEEecchHHHhhhcccccCCcCCC
Confidence 366666555443332223345699999999999999986532 245554
No 39
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.62 E-value=0.32 Score=37.97 Aligned_cols=44 Identities=11% Similarity=0.304 Sum_probs=32.3
Q ss_pred ceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEe--cCCeeEEe
Q psy11457 180 HKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQK--QDDSKSFD 224 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~--~~~k~~~k 224 (315)
...+|-+.+..... +.....+++++||...|+++.. +...|.|+
T Consensus 10 G~vi~mS~V~~~~~-~~qe~~eRyLvLFp~~LlilS~s~r~sGf~yq 55 (111)
T cd01225 10 GNVIHMSQVAVQYG-AGEEKRERYLVLFPNVLLMLSASPRMSGFIYQ 55 (111)
T ss_pred CceEEEEEEEEecC-CccccceeEEEEcCceEEEEEcCCCccceEEe
Confidence 34678887776542 2334679999999999999997 34567877
No 40
>PF15411 PH_10: Pleckstrin homology domain
Probab=94.20 E-value=0.076 Score=42.09 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=29.6
Q ss_pred ceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecC
Q psy11457 180 HKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQD 218 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~ 218 (315)
.+|+..|.+....+ ...++.+||||+.+||+|++..
T Consensus 5 G~Lll~g~~~V~k~---~~erE~~vYLFe~illc~kE~~ 40 (116)
T PF15411_consen 5 GELLLHGTLTVGKD---DSEREYEVYLFEKILLCCKEVK 40 (116)
T ss_pred cceEEccEEEEEeC---CcceeeeeeeeeeeEEEEecCc
Confidence 45899999987764 3467999999999999999643
No 41
>KOG3524|consensus
Probab=94.11 E-value=0.084 Score=53.11 Aligned_cols=141 Identities=6% Similarity=-0.033 Sum_probs=118.3
Q ss_pred CHHHHHHHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCC
Q psy11457 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNP 80 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~ 80 (315)
|.++|++..+.+......|.....+++.++..+ -.|.+.|-++...+++.-..+-.+.+.|+.+.+|.+.-.+.+
T Consensus 440 I~~vh~k~~D~l~~l~~nw~e~k~el~kayppy-----vnffet~ke~~~~cdre~prfhaflKinq~kpecgRq~l~dl 514 (850)
T KOG3524|consen 440 IVVVHKKNDDKLLDLAQNWIEAKEELKKAYPPY-----VNFFETIKELFDKCDRENPRFHAFLKINQSKPECGRQKLTDL 514 (850)
T ss_pred hhhhhccchHHHHHHHHhhHHHHHHHHHhccch-----hhHHHHhHHHHHHHhccchHHHHHHHccccchhhhhhcccch
Confidence 346777777777777676755567788777776 356688888888888888888889999999999999989999
Q ss_pred cccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11457 81 LCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHR 148 (315)
Q Consensus 81 ~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~ 148 (315)
.|+..+.-..++.|+|+++| ++...+-+++.+..++...+..++...++...++++-.+..+....
T Consensus 515 mirpvqrlpsvilllndl~k--~s~N~dk~~leea~kaikev~khInedKrkte~~~~ifdkf~dieg 580 (850)
T KOG3524|consen 515 MIRPVQRLPSVILLLNDMAK--KSDNKDKNNLEEAAKAIKEVLKHINEDKRKTENFISIFDKFTDIEG 580 (850)
T ss_pred hccchhhhhHHHHHHHHHHh--hccCcchhhHHHhhhhHHHHHHHhchhHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999 7777788888888889999999999999999999988887766544
No 42
>KOG3522|consensus
Probab=91.83 E-value=2.2 Score=44.30 Aligned_cols=178 Identities=15% Similarity=0.090 Sum_probs=88.0
Q ss_pred HHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCCcccCCCcch
Q psy11457 10 NSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKD 89 (315)
Q Consensus 10 ~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~~~~rl~L~~ 89 (315)
+.+-.+.-.+.....|++++.++++++ .+. ++|..|.. ..|...+.+++-+ | |.+..+
T Consensus 74 q~vga~~v~~fSk~~v~~~Y~~y~nn~--~~A-~~~l~~~~--rpaf~~Fl~l~~k-P----------------r~P~y~ 131 (925)
T KOG3522|consen 74 QKVGASFVYSFSKTAVLAAYSKYVNNF--KRA-KCALRNKK--RPAFSKFLELMIK-P----------------RFPRYE 131 (925)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhch--hHH-HHHHHHhc--chHHHHHHHHHhc-c----------------CCchHH
Confidence 344444555666788999999999866 233 78888888 3333333334322 2 344444
Q ss_pred hhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhcCCCC-----
Q psy11457 90 IIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLA----EIQKRLDRTP----- 160 (315)
Q Consensus 90 ~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~----~i~~~l~~~~----- 160 (315)
+|++ |++=|-.....+.+|+.+-..+++......+.....+.+.++++..++.+..-.+. ..++++-.+.
T Consensus 132 lll~-mlkhtp~~Hpdr~~Lq~al~~~~~~ae~ine~kr~a~~~~e~q~~~rei~~r~el~e~L~ag~r~lLl~dl~se~ 210 (925)
T KOG3522|consen 132 LLLQ-MLKHTPLDHPDRLILQLALTLLETLAEKINEHKRFADEINELQAALREIEVRSELMEDLGAGRRQLLLQDLVSET 210 (925)
T ss_pred HHHH-HhhcCCcCCCchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHhhhh
Confidence 5555 55544444444444444333333344344444444444444444444444332211 1222222110
Q ss_pred -CCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCc-------ceEEEEEecCCcEEEEEe
Q psy11457 161 -FEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQK-------LIELYVLLLEDIIVLLQK 216 (315)
Q Consensus 161 -~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k-------~~~~~~fLf~d~Ll~~~~ 216 (315)
+..- .+....+ ..|.++.-+.+..+.+.-++. ..-.|.+||++.|.+++-
T Consensus 211 vy~~r-k~d~~~~-----~~rd~i~~~~Lk~~sg~~r~~~t~as~vdt~ky~~lw~~~L~~~~v 268 (925)
T KOG3522|consen 211 VYTGR-KKDRKAF-----LFRDLIVNTDLKRASGSSRKPSTAASVVDTAKYKLLWKDPLVFADV 268 (925)
T ss_pred hhccc-cchhhhe-----eeeeeeeeeeeeeeeceecCCccccccccccceeeeeccccchhhe
Confidence 0000 0011111 137778778777665422221 012789999999988863
No 43
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=91.74 E-value=0.62 Score=33.80 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=19.1
Q ss_pred CcceEEEEEecCCcEEEEEecCC
Q psy11457 197 QKLIELYVLLLEDIIVLLQKQDD 219 (315)
Q Consensus 197 ~k~~~~~~fLf~d~Ll~~~~~~~ 219 (315)
.....++++|+++.|.+...+..
T Consensus 17 ~~w~~~~~~l~~~~l~~~~~~~~ 39 (99)
T cd00900 17 KRWKRRWFFLFDDGLLLYKSDDK 39 (99)
T ss_pred cCceeeEEEEECCEEEEEEcCCC
Confidence 45789999999999999887654
No 44
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=90.47 E-value=1.5 Score=33.44 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=23.7
Q ss_pred EEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecC
Q psy11457 183 IYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQD 218 (315)
Q Consensus 183 i~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~ 218 (315)
+++|.|..+.+ +......++++|-+..|.+-+..+
T Consensus 3 ~k~G~L~Kkg~-~~k~WkkRwfvL~~~~L~yyk~~~ 37 (100)
T cd01233 3 SKKGYLNFPEE-TNSGWTRRFVVVRRPYLHIYRSDK 37 (100)
T ss_pred ceeEEEEeeCC-CCCCcEEEEEEEECCEEEEEccCC
Confidence 57898876554 233367888888887777766544
No 45
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.38 E-value=1 Score=33.01 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=22.1
Q ss_pred EeeEEEEeecCCCcceEEEEEecCCcEEEEEecC
Q psy11457 185 EGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQD 218 (315)
Q Consensus 185 eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~ 218 (315)
+|.|..+.+ ..+....++++|-++.|.+-+..+
T Consensus 2 ~G~L~k~~~-~~~~W~~r~~vl~~~~L~~~~~~~ 34 (91)
T cd01246 2 EGWLLKWTN-YLKGWQKRWFVLDNGLLSYYKNKS 34 (91)
T ss_pred eEEEEEecc-cCCCceeeEEEEECCEEEEEecCc
Confidence 677765543 224467899999888777766543
No 46
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=90.24 E-value=1.3 Score=33.26 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=23.1
Q ss_pred ccccCccccccccccccCceEEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 271 LRSLSPREKKRQEVINDRSALYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 271 l~~l~~~~~~~r~~~~~~~~~~li~~~~~~~~~~~l~a~s~~er 314 (315)
|+.. .+.....++..| .|.+. +-+.|.|.|.|++||
T Consensus 46 L~~~-----~i~~~~~~~~~F-~i~~~--~~r~~~L~A~s~~e~ 81 (91)
T cd01247 46 LKKA-----IIAAHEFDENRF-DISVN--ENVVWYLRAENSQSR 81 (91)
T ss_pred Cccc-----EEEcCCCCCCEE-EEEeC--CCeEEEEEeCCHHHH
Confidence 6665 444444455544 45443 238999999999987
No 47
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=87.08 E-value=3.9 Score=31.35 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=29.6
Q ss_pred CCCccCCCccccccccCccccccccccc----cCceEEEEEcCCC----CCeeEEEEcCCccc
Q psy11457 259 PPDWTKSVPEDILRSLSPREKKRQEVIN----DRSALYLVNTSQH----SAQIYDLVASSASE 313 (315)
Q Consensus 259 ~~~i~~~~~~~~l~~l~~~~~~~r~~~~----~~~~~~li~~~~~----~~~~~~l~a~s~~e 313 (315)
..+|+ |.+| .+|++.. .+.+|-|.+++.. .-...||.|.|.+|
T Consensus 43 kyilp-------LdnL-----k~Rdve~gf~sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~ 93 (110)
T cd01256 43 KYMLP-------LDGL-----KLRDIEGGFMSRNHKFALFYPDGRNVYKDYKQLELGCETLEE 93 (110)
T ss_pred cceee-------cccc-----EEEeecccccCCCcEEEEEcCcccccccchheeeecCCCHHH
Confidence 36788 9999 9999874 3466777766621 12246888888775
No 48
>KOG0930|consensus
Probab=86.72 E-value=5.4 Score=36.30 Aligned_cols=112 Identities=21% Similarity=0.331 Sum_probs=65.4
Q ss_pred HHHHHHHhhcCCCCCCccCCcchhhhccccCCCceEE---EEeeEEEEeecCCCcc-eEEEEEecCCcEEEEEecCCeeE
Q psy11457 147 HRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTRHKLI---YEGNLQLRIATTRQKL-IELYVLLLEDIIVLLQKQDDSKS 222 (315)
Q Consensus 147 ~~L~~i~~~l~~~~~~~~~~~~~~~~~~l~l~~R~Li---~eG~l~~~~~~~~~k~-~~~~~fLf~d~Ll~~~~~~~k~~ 222 (315)
..|.++..+|...+|...+.. .-++++ .|. +||.|... +.++-+. +.++++|=++||-+-.-.
T Consensus 229 e~LrnlyeSi~~epFkIPedd------gndlth-tffnpdREGWLlKl-gg~rvktWKrRWFiLtdNCLYYFe~t----- 295 (395)
T KOG0930|consen 229 ELLRNLYESIKNEPFKIPEDD------GNDLTH-TFFNPDREGWLLKL-GGNRVKTWKRRWFILTDNCLYYFEYT----- 295 (395)
T ss_pred HHHHHHHHHhcCCCCCCCccc------CCcchh-hccCccccceeeee-cCCcccchhheeEEeecceeeeeeec-----
Confidence 567888999988877665421 112221 122 36777644 3334443 455555555555443221
Q ss_pred EeCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCccccccccCccccccccccccC--ceEEEEEcCCCC
Q psy11457 223 FDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDR--SALYLVNTSQHS 300 (315)
Q Consensus 223 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~~~--~~~~li~~~~~~ 300 (315)
||-|++ ++|+ |.+| -+|+|.+-+ .+|-|.+.|..|
T Consensus 296 ------------------------------TDKEPr-GIIp-------LeNl-----sir~VedP~kP~cfEly~ps~~g 332 (395)
T KOG0930|consen 296 ------------------------------TDKEPR-GIIP-------LENL-----SIREVEDPKKPNCFELYIPSNKG 332 (395)
T ss_pred ------------------------------cCCCCC-ccee-------cccc-----ceeeccCCCCCCeEEEecCCCCc
Confidence 111222 7999 9999 999987433 555555555422
Q ss_pred ------------------CeeEEEEcCCcccc
Q psy11457 301 ------------------AQIYDLVASSASER 314 (315)
Q Consensus 301 ------------------~~~~~l~a~s~~er 314 (315)
-.+|.+.|.|+|||
T Consensus 333 q~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~ 364 (395)
T KOG0930|consen 333 QVIKACKTEADGRVVEGNHSVYRISAPTPEEK 364 (395)
T ss_pred CeeeeecccCCceeEeccceEEEeeCCCHHHH
Confidence 34699999999986
No 49
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=84.81 E-value=5.2 Score=31.72 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=19.0
Q ss_pred EEeeEEEEeecCCCcceEEEEEecCCcEEEEE
Q psy11457 184 YEGNLQLRIATTRQKLIELYVLLLEDIIVLLQ 215 (315)
Q Consensus 184 ~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~ 215 (315)
++|.|..+.+ .......++++|-++.|.+-+
T Consensus 2 k~G~L~K~~~-~~~~WkkRwfvL~~~~L~yyk 32 (125)
T cd01252 2 REGWLLKQGG-RVKTWKRRWFILTDNCLYYFE 32 (125)
T ss_pred cEEEEEEeCC-CCCCeEeEEEEEECCEEEEEc
Confidence 4687764443 223367888888776655544
No 50
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=83.36 E-value=5.2 Score=30.18 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=17.1
Q ss_pred ceEEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 289 SALYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 289 ~~~~li~~~~~~~~~~~l~a~s~~er 314 (315)
...|-|.+. ...|.|.|.|++|+
T Consensus 61 ~~~F~i~t~---~r~y~l~A~s~~e~ 83 (95)
T cd01265 61 KGRFEIHSN---NEVIALKASSDKQM 83 (95)
T ss_pred CCEEEEEcC---CcEEEEECCCHHHH
Confidence 445566653 46899999999987
No 51
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=83.22 E-value=5.6 Score=29.76 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=20.7
Q ss_pred EEeeEEEEeecCC---CcceEEEEEecCCcEEEEEe
Q psy11457 184 YEGNLQLRIATTR---QKLIELYVLLLEDIIVLLQK 216 (315)
Q Consensus 184 ~eG~l~~~~~~~~---~k~~~~~~fLf~d~Ll~~~~ 216 (315)
++|.|..+.+.++ .....++++|-++.|.+-+.
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~ 37 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRS 37 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECC
Confidence 4688876654211 13568888887776666554
No 52
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=82.79 E-value=6.2 Score=28.92 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=18.9
Q ss_pred EeeEEEEeecCCCcceEEEEEecCCcEEEEE
Q psy11457 185 EGNLQLRIATTRQKLIELYVLLLEDIIVLLQ 215 (315)
Q Consensus 185 eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~ 215 (315)
+|.|..+.+.+......++++|-+..|.+-.
T Consensus 2 ~G~L~kk~~~~~~~W~kr~~~L~~~~l~~y~ 32 (94)
T cd01250 2 QGYLYKRSSKSNKEWKKRWFVLKNGQLTYHH 32 (94)
T ss_pred cceEEEECCCcCCCceEEEEEEeCCeEEEEc
Confidence 5777655432234467888888766666543
No 53
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=78.73 E-value=5.6 Score=30.69 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=15.5
Q ss_pred eEEEEEcCCCCCeeEEEEcCCccccC
Q psy11457 290 ALYLVNTSQHSAQIYDLVASSASERK 315 (315)
Q Consensus 290 ~~~li~~~~~~~~~~~l~a~s~~erk 315 (315)
.+|-|.+. -..|.+.|.|.+||.
T Consensus 75 ~~F~i~t~---~r~~yl~A~s~~er~ 97 (106)
T cd01238 75 YPFQVVHD---EGTLYVFAPTEELRK 97 (106)
T ss_pred ccEEEEeC---CCeEEEEcCCHHHHH
Confidence 34555553 236779999999973
No 54
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=76.68 E-value=7.3 Score=29.25 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=17.5
Q ss_pred CceEEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 288 RSALYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 288 ~~~~~li~~~~~~~~~~~l~a~s~~er 314 (315)
...+|.|.+. ...|.|.|.|++|+
T Consensus 67 ~~~~f~i~t~---~r~~~~~a~s~~e~ 90 (101)
T cd01235 67 RKGFFDLKTS---KRTYNFLAENINEA 90 (101)
T ss_pred CceEEEEEeC---CceEEEECCCHHHH
Confidence 3456666653 46899999999986
No 55
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=68.55 E-value=6.9 Score=29.95 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=29.2
Q ss_pred CCccCCCccccccccCcccccccccccc----CceEEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 260 PDWTKSVPEDILRSLSPREKKRQEVIND----RSALYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 260 ~~i~~~~~~~~l~~l~~~~~~~r~~~~~----~~~~~li~~~~~~~~~~~l~a~s~~er 314 (315)
.+|. |..+ .|+++... +.+|-+++.+ ++++|.++|+| +||
T Consensus 45 gli~-------l~~~-----~V~~v~ds~~~r~~cFel~~~~--~~~~y~~~a~~-~er 88 (98)
T cd01245 45 GLID-------LSDA-----YLYPVHDSLFGRPNCFQIVERA--LPTVYYSCRSS-EER 88 (98)
T ss_pred ceee-------cccc-----EEEEccccccCCCeEEEEecCC--CCeEEEEeCCH-HHH
Confidence 4788 8888 88887643 2555555554 46899999999 876
No 56
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=68.51 E-value=37 Score=25.83 Aligned_cols=27 Identities=30% Similarity=0.207 Sum_probs=17.3
Q ss_pred EEEeeEEEEeecCCCcceEEEEEecCCc
Q psy11457 183 IYEGNLQLRIATTRQKLIELYVLLLEDI 210 (315)
Q Consensus 183 i~eG~l~~~~~~~~~k~~~~~~fLf~d~ 210 (315)
+++|.|..+.+ .......+++.|-+|-
T Consensus 2 ~k~G~L~K~g~-~~~~Wk~R~f~L~~~~ 28 (102)
T cd01241 2 VKEGWLHKRGE-YIKTWRPRYFLLKSDG 28 (102)
T ss_pred cEEEEEEeecC-CCCCCeeEEEEEeCCC
Confidence 57888875443 3344678888887453
No 57
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=65.49 E-value=21 Score=27.33 Aligned_cols=21 Identities=10% Similarity=0.131 Sum_probs=15.8
Q ss_pred EEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 291 LYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 291 ~~li~~~~~~~~~~~l~a~s~~er 314 (315)
.|-|.+. -..|.|.|.|++||
T Consensus 69 ~F~i~t~---~Rty~l~a~s~~e~ 89 (103)
T cd01251 69 GVTLVTP---ERKFLFACETEQDR 89 (103)
T ss_pred eEEEEeC---CeEEEEECCCHHHH
Confidence 4555553 45899999999987
No 58
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=59.37 E-value=62 Score=24.60 Aligned_cols=89 Identities=13% Similarity=0.166 Sum_probs=59.3
Q ss_pred HHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCCcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHH
Q psy11457 47 TFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRAL 126 (315)
Q Consensus 47 ~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al 126 (315)
+||++...+++++.+.++.|.. .++...=.+-+..-.|.||..+--|-..+....+.-..++.|+.-+
T Consensus 2 ef~~~l~~~v~if~nRmksns~------------RGrsIanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~E~lQdkL 69 (96)
T PF12210_consen 2 EFCNTLRSSVEIFVNRMKSNSS------------RGRSIANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYYEGLQDKL 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------TT--GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHh------------cCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888888887755432 1122223456666778888776644444454444456788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11457 127 DRSKEILNYVNQAVKEAEDQH 147 (315)
Q Consensus 127 ~~ik~i~~~vn~~~~~~e~~~ 147 (315)
..+++.-..+|....+.....
T Consensus 70 ~qi~eAR~AlDalR~eH~~kl 90 (96)
T PF12210_consen 70 AQIKEARAALDALREEHREKL 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999888887766665443
No 59
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=58.92 E-value=47 Score=24.72 Aligned_cols=76 Identities=18% Similarity=0.135 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHh--cChHHHHHHHHHHhC
Q psy11457 3 DIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRR--KDSRLNAFLTEAELN 79 (315)
Q Consensus 3 ~~H~~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~--~~~~f~~fl~~~e~~ 79 (315)
+.|+.+|+.+.......-.+..|-+-+..++....-+... .-..-..|...|..++..+.+ ...-|++|+.-.+..
T Consensus 2 ~~~r~lL~~~~~~l~~~l~p~~il~~l~~~L~~~~~e~I~-a~~~~~g~~~aa~~Ll~~L~~~r~~~wf~~Fl~AL~~~ 79 (88)
T cd08812 2 EEYRRLLERLQPLLKDTIIPRDILDHLPECLTDEDKEQIL-AEERNKGNIAAAEELLDRLERCDKPGWFQAFLDALRRT 79 (88)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCHHHHHHHH-HHHhccChHHHHHHHHHHHHHhccCCcHHHHHHHHHHc
Confidence 5788999998888877655666777777666543333332 212222577888888887763 555699998877653
No 60
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=54.76 E-value=41 Score=26.78 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=16.4
Q ss_pred EEeeEEEEeecCCCc-ceEEEEEecCCcEEEEE
Q psy11457 184 YEGNLQLRIATTRQK-LIELYVLLLEDIIVLLQ 215 (315)
Q Consensus 184 ~eG~l~~~~~~~~~k-~~~~~~fLf~d~Ll~~~ 215 (315)
+.|-|+.....|.-+ ...++++|-..+|.+-+
T Consensus 3 ~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k 35 (122)
T cd01263 3 YHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWK 35 (122)
T ss_pred cceeEEEEeccCCCCCceEEEEEEeCCEEEEEc
Confidence 457777644333334 45566666644444443
No 61
>KOG1729|consensus
Probab=53.42 E-value=3.2 Score=38.22 Aligned_cols=38 Identities=29% Similarity=0.299 Sum_probs=30.4
Q ss_pred cCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEe
Q psy11457 176 DLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQK 216 (315)
Q Consensus 176 ~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~ 216 (315)
...+|.|+.+|.++... +++.+.+..|||+|+++++..
T Consensus 40 ~~~grv~~~q~~~~k~~---rk~~q~r~~~l~~D~~~~~~~ 77 (288)
T KOG1729|consen 40 RECGRVLCRQGTLVKRC---RKKLQSRSFFLFNDILVYGNI 77 (288)
T ss_pred cccchhhhhhhhhHHHH---hcccccccccccccchhhccc
Confidence 44569999999994332 556889999999999999975
No 62
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=50.69 E-value=54 Score=25.19 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=12.0
Q ss_pred CeeEEEEcCCcccc
Q psy11457 301 AQIYDLVASSASER 314 (315)
Q Consensus 301 ~~~~~l~a~s~~er 314 (315)
-..|.|.|.|++|+
T Consensus 77 ~rt~~l~A~se~e~ 90 (101)
T cd01264 77 DKTYILKAKDEKNA 90 (101)
T ss_pred CceEEEEeCCHHHH
Confidence 35899999999886
No 63
>PF15409 PH_8: Pleckstrin homology domain
Probab=46.53 E-value=1e+02 Score=23.14 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=12.8
Q ss_pred CCeeEEEEcCCcccc
Q psy11457 300 SAQIYDLVASSASER 314 (315)
Q Consensus 300 ~~~~~~l~a~s~~er 314 (315)
|.++|.|.|.|.++.
T Consensus 64 g~~i~hLKa~s~~~f 78 (89)
T PF15409_consen 64 GDEIWHLKAKSQEDF 78 (89)
T ss_pred CCeEEEEEcCCHHHH
Confidence 578999999998874
No 64
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=42.82 E-value=90 Score=23.82 Aligned_cols=14 Identities=29% Similarity=0.190 Sum_probs=12.0
Q ss_pred CeeEEEEcCCcccc
Q psy11457 301 AQIYDLVASSASER 314 (315)
Q Consensus 301 ~~~~~l~a~s~~er 314 (315)
...|.|.|.|++|+
T Consensus 84 ~r~y~l~A~s~ee~ 97 (108)
T cd01266 84 VRDLYLVAKNEEEM 97 (108)
T ss_pred CccEEEEECCHHHH
Confidence 45899999999986
No 65
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=36.72 E-value=1.5e+02 Score=22.08 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=15.8
Q ss_pred ceEEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 289 SALYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 289 ~~~~li~~~~~~~~~~~l~a~s~~er 314 (315)
..|.|... .-+.|.|.|.|.++.
T Consensus 72 ~~F~l~~~---~~~~~~f~a~s~e~~ 94 (104)
T cd01253 72 HVFRLRLP---DGAEFLFQAPDEEEM 94 (104)
T ss_pred eEEEEEec---CCCEEEEECCCHHHH
Confidence 45555543 346899999998874
No 66
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=31.02 E-value=2.2e+02 Score=21.52 Aligned_cols=13 Identities=15% Similarity=0.105 Sum_probs=11.4
Q ss_pred eEEEEcCCccccC
Q psy11457 303 IYDLVASSASERK 315 (315)
Q Consensus 303 ~~~l~a~s~~erk 315 (315)
.|.+.|.|++||.
T Consensus 77 ~~yi~a~s~~E~~ 89 (98)
T cd01244 77 TMQLQFEAPVEAT 89 (98)
T ss_pred eEEEECCCHHHHH
Confidence 7999999999873
No 67
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=27.15 E-value=1.8e+02 Score=22.95 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=15.2
Q ss_pred CCCcceEEEEEecCCcEEEEE
Q psy11457 195 TRQKLIELYVLLLEDIIVLLQ 215 (315)
Q Consensus 195 ~~~k~~~~~~fLf~d~Ll~~~ 215 (315)
|++....++++|-...|.+-+
T Consensus 22 ~~R~Wk~~y~vL~g~~L~~yK 42 (117)
T cd01230 22 GKRSWKMFYGILRGLVLYLQK 42 (117)
T ss_pred CCCcceEEEEEEECCEEEEEc
Confidence 345578999999877776654
No 68
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=26.97 E-value=1.4e+02 Score=22.74 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=15.8
Q ss_pred eEEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 290 ALYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 290 ~~~li~~~~~~~~~~~l~a~s~~er 314 (315)
-.|-|.|. -..|.|.|.|++|+
T Consensus 70 ~~f~i~t~---dr~f~l~aese~E~ 91 (101)
T cd01257 70 HLIALYTR---DEYFAVAAENEAEQ 91 (101)
T ss_pred eEEEEEeC---CceEEEEeCCHHHH
Confidence 34455553 25899999999986
No 69
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=26.28 E-value=1.6e+02 Score=22.58 Aligned_cols=21 Identities=14% Similarity=-0.050 Sum_probs=16.0
Q ss_pred EEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 291 LYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 291 ~~li~~~~~~~~~~~l~a~s~~er 314 (315)
.|.|.+. -..|.|.|.|++|+
T Consensus 73 ~f~I~tp---~R~f~l~Aete~E~ 93 (104)
T cd01236 73 SICILTP---DKEHFIKAETKEEI 93 (104)
T ss_pred EEEEECC---CceEEEEeCCHHHH
Confidence 4556553 46899999999987
No 70
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=24.55 E-value=2.7e+02 Score=20.01 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=36.9
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhc
Q psy11457 102 PLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAE-IQKRL 156 (315)
Q Consensus 102 ~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~-i~~~l 156 (315)
..||.+|+++. +.|.+|+..+...+..||..-...|-...+.+ +++.+
T Consensus 10 ~~LLsRIi~Nv-------ekLNEsv~~lN~~l~eIn~~N~~le~~~qm~enY~~nv 58 (72)
T PF08650_consen 10 SNLLSRIIGNV-------EKLNESVAELNQELEEINRANKNLEIVAQMWENYQRNV 58 (72)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Confidence 46888888874 56888899999999999988888887777766 44433
No 71
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=23.37 E-value=5.7e+02 Score=24.72 Aligned_cols=100 Identities=12% Similarity=0.106 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHh---cChHHHHHHHHHHhCCcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCC
Q psy11457 39 EAFQRAAATFCSRQQIALESLRERRR---KDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDN 115 (315)
Q Consensus 39 ~~~~~~Y~~Yc~~~~~a~~~l~~~~~---~~~~f~~fl~~~e~~~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~ 115 (315)
.++.++...||..+.....++..... ..+....|+.+.-... ++-|++..-+---+-+|-+|++|++-.+-.....
T Consensus 67 ~W~~~~ld~~l~~~~efr~li~~~~~~~~s~~~~dk~v~eylD~s-VKlLDvCNA~~~gi~~lr~~~~ll~~al~~L~~~ 145 (389)
T PF05633_consen 67 SWMRKALDSFLCCHEEFRALITNLRDLPLSKPPDDKWVDEYLDRS-VKLLDVCNAIRDGISQLRQWQLLLQIALHALDSS 145 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 36778889999999998888776522 1233455554443322 2457777778889999999999999888876554
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHH
Q psy11457 116 -ENELTKVKRALDRSKEILNYVNQA 139 (315)
Q Consensus 116 -~~e~~~l~~Al~~ik~i~~~vn~~ 139 (315)
+..-..+.+|-..+.++...+...
T Consensus 146 ~~~~~~~~rRAr~aL~dl~~~~~~~ 170 (389)
T PF05633_consen 146 RPLGEGQLRRARKALSDLKIAMLDD 170 (389)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhcc
Confidence 345668889988888887766543
No 72
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3.1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....
Probab=22.30 E-value=1.1e+02 Score=23.31 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=40.3
Q ss_pred ChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCCcccCCCcchhhhh
Q psy11457 24 DVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPT 93 (315)
Q Consensus 24 ~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~~~~rl~L~~~L~~ 93 (315)
-+||.++++.- -..+|..|-...+..+..++...-.|..+..... +++|..||..
T Consensus 5 fLGDavL~~~v------~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~---------~~gl~~~l~~ 59 (114)
T PF00636_consen 5 FLGDAVLKLLV------SEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAV---------KLGLHKYLRQ 59 (114)
T ss_dssp HHHHHHHHHHH------HHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHH---------HTTHGCTCBH
T ss_pred HhHHHHHHHHH------HHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHH---------HhCchHhhhc
Confidence 48999999973 3478888888788888888888766666665533 4667777764
No 73
>PF15601 Imm42: Immunity protein 42
Probab=22.28 E-value=1.8e+02 Score=23.67 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHH
Q psy11457 98 LTKYPLLFANLAKYTVDNENELTKVKRALDRSKEI 132 (315)
Q Consensus 98 itkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i 132 (315)
=+|||+|+.++.+- .-..+.+..|++.+++|
T Consensus 35 GskfP~Lm~~LY~g----~L~~~~~~~A~~eL~~I 65 (134)
T PF15601_consen 35 GSKFPLLMNELYRG----YLRYEELEKALKELEEI 65 (134)
T ss_pred CCcchHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 36999999999332 24577788888777655
No 74
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=21.58 E-value=2.4e+02 Score=21.89 Aligned_cols=17 Identities=6% Similarity=-0.085 Sum_probs=12.7
Q ss_pred CCCCeeEEEEcCCcccc
Q psy11457 298 QHSAQIYDLVASSASER 314 (315)
Q Consensus 298 ~~~~~~~~l~a~s~~er 314 (315)
+.|-..|.|.|.|.+++
T Consensus 76 ~~~~r~y~l~cdsEeqy 92 (106)
T cd01237 76 AEGMNEVWLRCDNEKQY 92 (106)
T ss_pred ccCCeEEEEECCCHHHH
Confidence 33445899999998875
Done!