Query psy11457
Match_columns 315
No_of_seqs 192 out of 1395
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 18:55:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11457.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11457hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p6a_A RHO guanine nucleotide 100.0 4.8E-53 1.6E-57 401.0 27.2 282 1-315 78-360 (377)
2 3t06_A PDZ-rhogef, RHO guanine 100.0 5.6E-51 1.9E-55 391.9 28.9 283 1-315 114-397 (418)
3 1xcg_A PDZ-rhogef, RHO guanine 100.0 1E-50 3.6E-55 383.8 26.9 283 1-315 72-355 (368)
4 3odw_A RHO guanine nucleotide 100.0 1.4E-50 4.9E-55 400.0 27.9 282 1-315 231-513 (536)
5 1txd_A RHO guanine nucleotide 100.0 2E-49 6.8E-54 377.4 26.3 281 1-315 75-358 (385)
6 2vrw_B P95VAV, VAV1, proto-onc 100.0 4.7E-42 1.6E-46 328.7 24.5 244 1-315 74-324 (406)
7 2dfk_A Collybistin II; DH doma 100.0 4.8E-41 1.6E-45 321.4 25.4 246 1-314 93-351 (402)
8 2z0q_A XPLN, RHO guanine nucle 100.0 1.2E-41 4E-46 319.3 19.2 243 1-315 70-335 (346)
9 3mpx_A FYVE, rhogef and PH dom 100.0 1.5E-40 5E-45 320.8 24.7 243 1-315 82-326 (434)
10 2pz1_A RHO guanine nucleotide 100.0 3.1E-40 1E-44 321.5 24.8 247 1-315 170-429 (466)
11 3ky9_A Proto-oncogene VAV; cal 100.0 3.3E-40 1.1E-44 329.7 23.4 244 1-315 246-496 (587)
12 1dbh_A Protein (human SOS 1); 100.0 2.4E-39 8.2E-44 304.5 16.6 243 1-315 55-338 (354)
13 1foe_A T-lymphoma invasion and 100.0 8.5E-38 2.9E-42 296.4 20.6 268 1-315 62-355 (377)
14 1kz7_A Guanine nucleotide exch 100.0 1.3E-35 4.6E-40 279.1 21.7 226 1-315 68-314 (353)
15 3jzy_A Intersectin 2; C2 domai 100.0 9.2E-39 3.2E-43 313.8 0.0 262 1-315 78-351 (510)
16 2rgn_B RHOA/RAC/CDC42 exchange 100.0 2.7E-35 9.3E-40 277.1 20.6 228 1-315 65-307 (354)
17 1nty_A Triple functional domai 100.0 8.1E-34 2.8E-38 262.4 20.2 225 1-315 64-297 (311)
18 3ksy_A SOS-1, SON of sevenless 100.0 9.2E-35 3.2E-39 306.3 10.8 243 1-315 252-535 (1049)
19 2lg1_A A-kinase anchor protein 100.0 2.6E-33 8.9E-38 239.9 1.8 160 111-315 2-161 (185)
20 3jv3_A Intersectin-1; SH3 doma 100.0 2.5E-30 8.5E-35 235.5 14.6 148 1-154 133-283 (283)
21 1by1_A Protein (PIX); RHO-GTPa 100.0 3.6E-29 1.2E-33 218.5 11.4 136 1-145 64-199 (209)
22 1zc3_B Exocyst complex protein 98.9 3.1E-09 1E-13 83.1 8.6 88 177-315 3-96 (113)
23 3qwm_A Iqsec1, IQ motif and SE 98.7 2.5E-08 8.5E-13 80.1 7.6 94 175-315 6-111 (140)
24 1fho_A UNC-89; pleckstrin homo 98.5 2.6E-08 9E-13 78.3 2.1 84 180-314 8-100 (119)
25 1v61_A RAC/CDC42 guanine nucle 97.7 8.2E-05 2.8E-09 59.2 7.0 84 181-314 27-114 (132)
26 1dyn_A Dynamin; signal transdu 93.7 0.16 5.6E-06 39.5 6.5 85 182-314 12-105 (125)
27 3rcp_A Pleckstrin homology dom 93.6 0.2 7E-06 36.7 6.9 80 185-314 2-81 (103)
28 1x1g_A Pleckstrin 2; PH domain 92.7 0.25 8.6E-06 37.8 6.3 29 180-209 16-44 (129)
29 2i5f_A Pleckstrin; PH domain, 92.3 0.45 1.6E-05 35.0 7.2 35 180-215 5-41 (109)
30 2d9y_A Pleckstrin homology dom 91.7 0.38 1.3E-05 36.0 6.1 36 180-215 9-44 (117)
31 2yry_A Pleckstrin homology dom 90.3 0.96 3.3E-05 34.0 7.4 37 179-215 19-55 (122)
32 1x05_A Pleckstrin; PH domain, 90.2 0.71 2.4E-05 35.2 6.6 34 180-214 16-51 (129)
33 1upq_A PEPP1; PH domain, phosp 90.2 0.98 3.4E-05 34.0 7.3 36 180-215 9-44 (123)
34 1v89_A Hypothetical protein KI 90.0 0.91 3.1E-05 33.7 7.0 36 180-216 6-41 (118)
35 2rsg_A Collagen type IV alpha- 90.0 0.77 2.6E-05 33.0 6.3 31 280-314 52-82 (94)
36 2lul_A Tyrosine-protein kinase 89.9 0.83 2.8E-05 37.0 7.0 34 181-215 14-52 (164)
37 2rlo_A Centaurin-gamma 1; spli 89.7 1.3 4.6E-05 33.8 7.9 35 182-216 4-39 (128)
38 2dkp_A Pleckstrin homology dom 89.7 0.99 3.4E-05 34.2 7.0 37 180-216 19-55 (128)
39 1unq_A RAC-alpha serine/threon 89.6 0.77 2.6E-05 34.9 6.3 34 181-215 7-41 (125)
40 2dn6_A KIAA0640 protein; PH do 89.4 0.99 3.4E-05 33.5 6.7 37 180-217 6-42 (115)
41 4gou_A EHRGS-rhogef; RGS domai 88.8 3.2 0.00011 36.4 10.1 117 1-130 237-364 (518)
42 1pls_A Pleckstrin homology dom 88.1 1.3 4.4E-05 32.9 6.5 34 182-216 5-38 (113)
43 4h8s_A DCC-interacting protein 87.7 2.4 8.1E-05 39.5 9.5 38 271-315 348-387 (407)
44 1btk_A Bruton'S tyrosine kinas 87.4 1.9 6.6E-05 35.0 7.7 35 182-216 3-41 (169)
45 2da0_A 130-kDa phosphatidylino 87.0 1.5 5E-05 32.8 6.3 33 182-214 10-42 (114)
46 1v88_A Oxysterol binding prote 86.3 1.4 4.7E-05 34.3 5.9 32 182-215 8-39 (130)
47 2w2x_D 1-phosphatidylinositol- 86.1 0.81 2.8E-05 35.1 4.4 36 180-216 10-45 (124)
48 1x1f_A Signal-transducing adap 86.1 2.5 8.5E-05 33.7 7.4 34 182-216 18-51 (149)
49 2cod_A Centaurin-delta 1; ARF 86.0 1.2 4.2E-05 33.1 5.3 38 180-217 6-43 (115)
50 1u5d_A SKAP55, SRC kinase-asso 85.9 1.9 6.6E-05 31.2 6.3 34 182-215 3-39 (108)
51 1u5f_A SRC-associated adaptor 85.1 2.3 7.7E-05 33.3 6.7 36 180-215 15-53 (148)
52 1fgy_A GRP1; PH domain, signal 83.7 1.7 5.7E-05 32.8 5.2 33 182-215 5-37 (127)
53 2cof_A Protein KIAA1914; PH do 83.3 1.8 6.2E-05 31.8 5.1 33 182-217 8-40 (107)
54 3cxb_B Pleckstrin homology dom 82.5 2.9 0.0001 31.2 6.1 26 286-314 64-89 (112)
55 4a6h_A Phosphatidylinositol 4, 81.8 3.1 0.00011 31.8 6.0 33 182-215 6-38 (120)
56 1fao_A Dual adaptor of phospho 81.2 4.1 0.00014 30.6 6.6 36 180-216 16-51 (126)
57 2dhk_A TBC1 domain family memb 81.0 2.1 7.2E-05 32.2 4.8 34 182-215 8-44 (119)
58 1wg7_A Dedicator of cytokinesi 79.9 1.3 4.5E-05 34.7 3.4 36 180-215 16-61 (150)
59 2q13_A DCC-interacting protein 79.1 17 0.00058 33.3 11.3 83 181-314 277-363 (385)
60 1wgq_A FYVE, rhogef and PH dom 77.9 3.1 0.00011 30.5 4.8 32 183-215 9-40 (109)
61 2fjl_A 1-phosphatidylinositol- 77.9 6.3 0.00022 31.5 6.8 33 183-216 2-34 (150)
62 2d9x_A Oxysterol binding prote 76.5 2.5 8.7E-05 31.7 4.0 36 271-314 57-92 (120)
63 2d9v_A Pleckstrin homology dom 76.2 14 0.00047 28.0 8.3 34 180-214 6-40 (130)
64 1eaz_A Tandem PH domain contai 74.6 4.6 0.00016 30.2 5.1 36 180-216 12-47 (125)
65 3aj4_A Pleckstrin homology dom 73.8 7.2 0.00025 28.5 5.9 22 290-314 78-99 (112)
66 2y7b_A Actin-binding protein a 73.7 4.1 0.00014 30.9 4.6 34 182-215 5-39 (134)
67 1u5e_A SRC-associated adaptor 73.1 7.4 0.00025 32.7 6.5 35 181-215 105-142 (211)
68 2dtc_A RAL guanine nucleotide 71.5 15 0.00053 28.2 7.4 42 260-314 58-100 (126)
69 3tfm_A Myosin X; split PH doma 71.4 6.4 0.00022 33.4 5.7 36 182-217 58-97 (228)
70 1v5p_A Pleckstrin homology dom 69.5 6.4 0.00022 30.1 4.9 22 289-314 87-108 (126)
71 1wi1_A Calcium-dependent activ 68.0 5.1 0.00018 31.0 3.9 33 182-214 8-40 (126)
72 1v5u_A SBF1, SET binding facto 66.7 8.5 0.00029 28.2 5.0 33 182-215 8-42 (117)
73 2j59_M RHO-GTPase activating p 66.4 14 0.00049 29.2 6.6 21 291-314 79-99 (168)
74 2r09_A Cytohesin-3; autoinhibi 62.3 9.3 0.00032 34.7 5.2 32 182-214 213-244 (347)
75 2lwd_A Probable ATP-dependent 60.9 38 0.0013 24.9 7.4 77 2-79 10-88 (100)
76 3a8p_A T-lymphoma invasion and 59.7 12 0.00043 32.5 5.4 36 180-215 9-55 (263)
77 1btn_A Beta-spectrin; signal t 56.3 22 0.00075 25.3 5.5 22 291-314 75-96 (106)
78 2p0d_A RHO GTPase-activating p 53.9 18 0.00061 27.5 4.8 37 180-216 10-51 (129)
79 2coc_A FYVE, rhogef and PH dom 48.8 40 0.0014 25.0 6.0 22 289-314 73-94 (112)
80 3f1i_H Hepatocyte growth facto 48.4 61 0.0021 23.6 6.4 86 46-143 3-88 (98)
81 2rov_A RHO-associated protein 47.8 17 0.00058 27.4 3.7 14 301-314 90-103 (117)
82 1wjm_A Beta-spectrin III; PH d 46.3 56 0.0019 24.0 6.5 34 182-215 8-48 (123)
83 3tca_A Amyloid beta A4 precurs 45.7 29 0.001 29.9 5.5 31 183-214 169-199 (291)
84 3lju_X ARF-GAP with dual PH do 44.4 32 0.0011 31.6 5.7 29 286-314 206-234 (386)
85 3lju_X ARF-GAP with dual PH do 43.9 34 0.0012 31.5 5.8 37 180-216 267-303 (386)
86 1dro_A Beta-spectrin; cytoskel 35.9 94 0.0032 22.8 6.3 33 183-215 9-48 (122)
87 1m3w_A H10H24; four-helix bund 35.0 25 0.00084 19.4 1.9 16 1-16 6-21 (32)
88 4gmv_A RAS-associated and plec 28.7 1.3E+02 0.0045 26.3 6.8 33 184-217 160-192 (281)
89 4ejn_A RAC-alpha serine/threon 25.6 2.2E+02 0.0076 25.8 8.3 31 181-213 5-37 (446)
90 1qqg_A IRS-1, insulin receptor 23.7 64 0.0022 27.9 3.8 25 180-209 8-32 (264)
91 3hk0_A Growth factor receptor- 22.9 1.7E+02 0.0059 25.1 6.4 34 183-217 133-166 (256)
92 3pp2_A RHO GTPase-activating p 20.4 1.4E+02 0.0048 22.0 4.8 34 182-215 8-47 (124)
No 1
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=100.00 E-value=4.8e-53 Score=400.97 Aligned_cols=282 Identities=44% Similarity=0.703 Sum_probs=249.3
Q ss_pred CHHHHHHHHHHHHHhHhcC-CCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhC
Q psy11457 1 MLDIHSTFNNSMKLKRKES-PVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELN 79 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~-~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~ 79 (315)
|+++|+.||..|+++..++ +.+..||++|++++++..|+.|.++|..||+||+.|.+.+++++++|+.|+.|+++++.+
T Consensus 78 I~~~h~~fl~~L~~~~~~~~~~~~~ig~~fl~~~~~~~~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~ 157 (377)
T 3p6a_A 78 LIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESR 157 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHhC
Confidence 5789999999999988765 567899999999998877778889999999999999999999999999999999999999
Q ss_pred CcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy11457 80 PLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRT 159 (315)
Q Consensus 80 ~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~ 159 (315)
|.|++++|.+||++|||||+||||||++|+|+||+ |+|+..+..|++.+++++..||+.++++|+..+|.+|+++|++.
T Consensus 158 ~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~-~~d~~~l~~A~~~i~~v~~~in~~~~~~e~~~~l~~iq~~l~~~ 236 (377)
T 3p6a_A 158 PRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEE-PTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLS 236 (377)
T ss_dssp GGGTTCCHHHHTTHHHHHHHHHHHHHHHHHHTCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECH
T ss_pred cccCCCCHHHHHHHHHHHhhhHHHHHHHHHhhCCC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999997 89999999999999999999999999999999999999999976
Q ss_pred CCCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecCCeeEEeCCCCCccccCCCCCC
Q psy11457 160 PFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSGPP 239 (315)
Q Consensus 160 ~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~~k~~~k~~~~~~~~~~~~~~~ 239 (315)
+.....++++..+.++++++|+|+++|.+.++.+ +++..++++|||+|+||+|++++++|+|+.+..+.... .+.+
T Consensus 237 ~~~~~~~~~~~~~~~l~~~~r~li~eG~l~~~~~--~~~~~~~~~fLF~d~Ll~~k~k~~k~~~k~~~~~~~~~--~~~k 312 (377)
T 3p6a_A 237 HLRQSSDPMLSEFKNLDITKKKLVHEGPLTWRVT--KDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPT--PDGK 312 (377)
T ss_dssp HHHHCCCGGGSSSTTCCCTTSCEEEEEEEEEESS--SSCEEEEEEEEESSEEEEEEEETTEEECCCCCCC----------
T ss_pred cccccccchhhhhcccccccceEEEECCcEEEec--CCCeEEEEEEeeCCEEEEEEEcCceeEEeecccccccC--cccc
Confidence 5444455677778899999999999999998876 44677999999999999999999999999654322111 1222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCccccccccCccccccccccccCceEEEEEcCCCCCeeEEEEcCCccccC
Q psy11457 240 PPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQHSAQIYDLVASSASERK 315 (315)
Q Consensus 240 ~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~~~~~~~li~~~~~~~~~~~l~a~s~~erk 315 (315)
... +|+|+ |+++ ++++++++.++||+|++++.++++|+|+|+|++||.
T Consensus 313 ~~~----------------~~~i~-------l~~~-----~v~e~~~~~~~~~~i~~~~~~~~~~~l~A~s~~ek~ 360 (377)
T 3p6a_A 313 TML----------------RPVLR-------LTSA-----MTREVATDHKAFYVLFTWDQEAQIYELVAQTVSERK 360 (377)
T ss_dssp -CS----------------CSEEE-------GGGE-----EEEECTTCTTEEEEEETTCTTCCEEEEECSSHHHHH
T ss_pred CCC----------------CCeEe-------chhh-----hccccccccceeEEEecCCCCCeeEEEecCCHHHHH
Confidence 222 38999 9999 999999999999999998889999999999999973
No 2
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=100.00 E-value=5.6e-51 Score=391.93 Aligned_cols=283 Identities=44% Similarity=0.717 Sum_probs=252.3
Q ss_pred CHHHHHHHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCC
Q psy11457 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNP 80 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~ 80 (315)
|+++|..|+..|+++..+++.+..||++|+++++++.++.++++|..||+||+.|.+++++++++++.|+.|+++++.+|
T Consensus 114 I~~~h~~fl~~L~~~~~~~~~~~~ig~ifl~~~~~~~~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~~~ 193 (418)
T 3t06_A 114 LIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHP 193 (418)
T ss_dssp HHHHHHHHHHHHHHHGGGCSSCCCCHHHHHHHHSTHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHTTSG
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHhcchhhhHHHhhhhHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHhCc
Confidence 58899999999999999999999999999999998777888899999999999999999999989999999999999999
Q ss_pred cccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy11457 81 LCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTP 160 (315)
Q Consensus 81 ~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~~ 160 (315)
.|++++|.+||++|||||+||+|||++|+|+|+++|+|+..|+.|++.+++++..||+.+++.|+..+|.+|+++|++++
T Consensus 194 ~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~v~~~iN~~~~~~e~~~~l~~i~~~l~~~~ 273 (418)
T 3t06_A 194 QCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATA 273 (418)
T ss_dssp GGTTCCHHHHTTHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEECCT
T ss_pred ccccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecCCeeEEeCCCCCccccCCCCCCC
Q psy11457 161 FEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSGPPP 240 (315)
Q Consensus 161 ~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~~k~~~k~~~~~~~~~~~~~~~~ 240 (315)
.+....++...|.++++++|+|+++|.+.|+.+ +++..++++|||+|+||+|++++++|+|+.+....... .+++
T Consensus 274 ~~~~~~~~~~~~~~l~~~~r~li~eG~l~~~~~--~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~--~~~~- 348 (418)
T 3t06_A 274 LERASNPLAAEFKSLDLTTRKMIHEGPLTWRIS--KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGS--SDSK- 348 (418)
T ss_dssp TSSCSCTTTTTTSSCCGGGSCEEEEEEEEECCB--TTBCCEEEEEEESSEEEEEEECSSCEECCC---------------
T ss_pred ccccccccchhhcccccccceeEEeceEEEEeC--CCCeEEEEEEecCCEEEEEEEcCCceEEeecccccccC--CCcc-
Confidence 777777888889999999999999999998765 45567999999999999999999999998432111000 1111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCccccccccCccccccccccccCceEEEEEcCCCCC-eeEEEEcCCccccC
Q psy11457 241 PSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQHSA-QIYDLVASSASERK 315 (315)
Q Consensus 241 ~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~~~~~~~li~~~~~~~-~~~~l~a~s~~erk 315 (315)
-...++|+ |+++ .|++++++.++|++++++..++ ++|+|.|+|++||.
T Consensus 349 ---------------~~~k~~i~-------l~~~-----~v~~~~~~~~~f~l~~~~~~~~~~~~~l~A~s~~ek~ 397 (418)
T 3t06_A 349 ---------------QTFSPVLK-------LNAV-----LIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKN 397 (418)
T ss_dssp ----------------CCCSEEE-------GGGE-----EEEECSSCSSEEEEEECCSSSTTCEEEEECSSHHHHH
T ss_pred ---------------cccCCcee-------chhc-----eeccccccCceEEEEecCCCCCceEEEEEcCCHHHHH
Confidence 12237899 9999 9999999999999999887665 89999999999973
No 3
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=100.00 E-value=1e-50 Score=383.84 Aligned_cols=283 Identities=45% Similarity=0.727 Sum_probs=245.7
Q ss_pred CHHHHHHHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCC
Q psy11457 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNP 80 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~ 80 (315)
|+++|..|+..|+++..+|+.+..||++|+.+|++..++.++++|..||+|++.|.+.+++++++|+.|++|+++|+.+|
T Consensus 72 i~~~h~~fl~~L~~~~~~~~~~~~ig~~f~~~~~~~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~fl~~~~~~~ 151 (368)
T 1xcg_A 72 LIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHP 151 (368)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHSHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHccchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCCHHHHHHHHHHHhCh
Confidence 57899999999999999999999999999999987666788899999999999999999999889999999999999999
Q ss_pred cccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy11457 81 LCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTP 160 (315)
Q Consensus 81 ~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~~ 160 (315)
.|++++|.+||++|||||+||||||++|+|+|+++|+|+..|..|++.+++++..||+.++++|+..+|.+|+++|++++
T Consensus 152 ~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~~~~v~~~vN~~~~~~e~~~~l~~i~~~l~~~~ 231 (368)
T 1xcg_A 152 QCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATA 231 (368)
T ss_dssp GGTTCCHHHHTTHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHH
T ss_pred hhccCChHHHhhhHhhhhhhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred CCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecCCeeEEeCCCCCccccCCCCCCC
Q psy11457 161 FEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSGPPP 240 (315)
Q Consensus 161 ~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~~k~~~k~~~~~~~~~~~~~~~~ 240 (315)
.+....|+...|.++++++|+|+++|.+.|+.+ +++..++++|||+|+||+|++++++|++++..... +...+.+
T Consensus 232 ~~~~~~pl~~~~~~l~~~~R~li~~G~l~~~~~--~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~--~~~~~~~- 306 (368)
T 1xcg_A 232 LERASNPLAAEFKSLDLTTRKMIHEGPLTWRIS--KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTA--VGSSDSK- 306 (368)
T ss_dssp HHSCSCTTTGGGGGCCGGGSCEEEEEEEEECCS--SSCCCEEEEEEESSEEEEEEECSSCEECCC---------------
T ss_pred hhhcccchhhhhhhcccccceEEeecceEeeec--CCCeeEEEEEcccccHHHhhcccccceeeeccccc--cCCCCcc-
Confidence 444445666678888888999999999998754 44567999999999999999999999988432100 0000001
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCccccccccCccccccccccccCceEEEEEcCCCC-CeeEEEEcCCccccC
Q psy11457 241 PSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQHS-AQIYDLVASSASERK 315 (315)
Q Consensus 241 ~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~~~~~~~li~~~~~~-~~~~~l~a~s~~erk 315 (315)
-...++|+ |+++ .|+++++++++|++++.+..| +++|+|.|+|++||+
T Consensus 307 ---------------~~~~~~i~-------l~~~-----~v~~~~~~~~~f~i~~~~~~g~~~~~~l~a~s~~ek~ 355 (368)
T 1xcg_A 307 ---------------QTFSPVLK-------LNAV-----LIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKN 355 (368)
T ss_dssp ----------------CCCSEEE-------GGGE-----EEEECSSCSSEEEEEECCSSSTTCEEEEECSSHHHHH
T ss_pred ---------------cCcCCceE-------ccce-----eeecccCCCceEEEEEecCCCCceEEEEEcCCHHHHH
Confidence 11237899 9999 999999999999999987655 489999999999873
No 4
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=100.00 E-value=1.4e-50 Score=400.04 Aligned_cols=282 Identities=44% Similarity=0.701 Sum_probs=242.1
Q ss_pred CHHHHHHHHHHHHHhHhcC-CCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhC
Q psy11457 1 MLDIHSTFNNSMKLKRKES-PVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELN 79 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~-~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~ 79 (315)
|+++|+.||..|+++..++ +.+..||+||++++++.+++.|+++|..||+||+.|.+.+++++++|+.|+.|+++|+..
T Consensus 231 I~~~h~~fL~~L~~~~~~~~~~~~~Igdifl~~~~~~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~~ 310 (536)
T 3odw_A 231 LIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESR 310 (536)
T ss_dssp HHHHHHHHHHHHHHHHHTC---CCCCHHHHHHHHSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHcchhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhCHHHHHHHHHHhhC
Confidence 5899999999999988764 567899999999998877778889999999999999999999999999999999999999
Q ss_pred CcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy11457 80 PLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRT 159 (315)
Q Consensus 80 ~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~ 159 (315)
+.|++++|.+||++|||||+||+|||++|+|+|++ |+|+..|+.|++.+++++..||+.++++|+..+|.+|+++|++.
T Consensus 311 ~~~~~l~L~s~Li~PvQRi~rY~LLL~~LlK~T~~-~~d~~~L~~Al~~i~~v~~~iNe~~r~~e~~~kL~~iq~~L~~~ 389 (536)
T 3odw_A 311 PRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEE-PTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLS 389 (536)
T ss_dssp GGGTTCCHHHHTTHHHHHHHHHHHHHHHHHTTCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECT
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999987 89999999999999999999999999999999999999999987
Q ss_pred CCCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecCCeeEEeCCCCCccccCCCCCC
Q psy11457 160 PFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSGPP 239 (315)
Q Consensus 160 ~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~~k~~~k~~~~~~~~~~~~~~~ 239 (315)
+......+++..|.++++++|+||++|.|.++.. +++..++++|||+|+||+|++++++|+|+....+.... .+.+
T Consensus 390 ~~~~~~~~~i~~~~~ldl~~R~LI~eG~l~~~~~--~~k~~~r~~fLF~D~LL~~k~k~~ky~~k~~~~~~~~~--~d~k 465 (536)
T 3odw_A 390 HLRQSSDPMLSEFKNLDITKKKLVHEGPLTWRVT--KDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPT--PDGK 465 (536)
T ss_dssp TTTTC---CCTTSSSCCCTTSCEEEEEEEEEESC--C---CEEEEEEESSEEEEEEEETTEEECCCC-------------
T ss_pred ccccccccchhhhcccccccceeeeecceEEEec--CCCeeEEEEEEcCCEEEEEEEcCCeEEEeecccccccc--cccc
Confidence 6665556677789999999999999999998875 44567999999999999999999999999543221101 1222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCccccccccCccccccccccccCceEEEEEcCCCCCeeEEEEcCCccccC
Q psy11457 240 PPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQHSAQIYDLVASSASERK 315 (315)
Q Consensus 240 ~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~~~~~~~li~~~~~~~~~~~l~a~s~~erk 315 (315)
.. ..|+|+ |..+ +|++++++.++||+|+.+..++++|+|+|+|++||+
T Consensus 466 ~~----------------~~~~i~-------L~~l-----~v~e~~~d~~~ffli~~~~~~~~~~~L~A~S~eEK~ 513 (536)
T 3odw_A 466 TM----------------LRPVLR-------LTSA-----MTREVATDHKAFYVLFTWDQEAQIYELVAQTVSERK 513 (536)
T ss_dssp -C----------------CCSEEE-------GGGE-----EEEECTTCTTEEEEEEC---CCCEEEEECSSHHHHH
T ss_pred cc----------------cCceee-------cccc-----eeecccccCCceEEEecCCCCceEEEEECCCHHHHH
Confidence 22 238999 9999 999999999999999998778999999999999973
No 5
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=100.00 E-value=2e-49 Score=377.35 Aligned_cols=281 Identities=47% Similarity=0.716 Sum_probs=237.3
Q ss_pred CHHHHHHHHHHHHHhHh---cCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHH
Q psy11457 1 MLDIHSTFNNSMKLKRK---ESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAE 77 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~---~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e 77 (315)
|+++| .||..|+++.. +++.+..||++|++++++.+++.|+++|..||+||+.|.+.+++++++|+.|++|+++|+
T Consensus 75 I~~~h-~fL~~l~~~~~~~~~~~~~~~ig~~fl~~~~~~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~ 153 (385)
T 1txd_A 75 ILQLH-IGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAE 153 (385)
T ss_dssp HHHHH-HHHHHHHHHHHTTCTTCCCCCCHHHHHHHHSTHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHhhcCCCcccHHHHHHHHccchhHHHHHHHHHHHHHchHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 57899 99999998653 456788999999999987667789999999999999999999999889999999999999
Q ss_pred hCCcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11457 78 LNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLD 157 (315)
Q Consensus 78 ~~~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~ 157 (315)
.+|.|++++|.+||++|||||+||||||++|+|+|+++ +|+..|..|++.+++++..||+.++++|+..+|.+|+++|+
T Consensus 154 ~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~-~d~~~l~~Al~~i~~v~~~iN~~~~~~e~~~~l~~i~~~l~ 232 (385)
T 1txd_A 154 SNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYTEWP-TEREKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLD 232 (385)
T ss_dssp HSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHHTCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred hCccccCCChHHHhhhHHhHhhhHHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999986 89999999999999999999999999999999999999999
Q ss_pred CCCCCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecCCeeEEeCCCCCccccCCCC
Q psy11457 158 RTPFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSG 237 (315)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~~k~~~k~~~~~~~~~~~~~ 237 (315)
+.++.....|.+.++.++++++|+|+++|.+.|+.. +.+..++++|||+|+||+|++++++|.+++........ .+
T Consensus 233 ~~~~~~~~~p~~~~~~~l~~~~R~li~eG~l~~~~~--~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~~--~~ 308 (385)
T 1txd_A 233 TSSLKLSEYPNVEELRNLDLTKRKMIHEGPLVWKVN--RDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILAST--AD 308 (385)
T ss_dssp CCCC-------CHHHHTCCGGGSCEEEEEEEEEESS--SSCBCCEEEEEESSEEEEEEEETTEEECCC------------
T ss_pred chhcccccccchhhhhhcccccceEEEECcEEEEcC--CCCeEEEEEEecCCeeEEEEecCCeeEEeecccccccc--CC
Confidence 765444445566678888889999999999998754 45567999999999999999999999888432110000 11
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccCCCccccccccCccccccccccccCceEEEEEcCCCCCeeEEEEcCCccccC
Q psy11457 238 PPPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQHSAQIYDLVASSASERK 315 (315)
Q Consensus 238 ~~~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~~~~~~~li~~~~~~~~~~~l~a~s~~erk 315 (315)
++- ...++|+ |+.+ .|+++++|.++||+|+....++++|+|.|+|++||+
T Consensus 309 ~~~----------------~~~~~i~-------l~~~-----~v~~~~~d~~~~f~i~~~~~~~~~~~l~a~s~~ek~ 358 (385)
T 1txd_A 309 SKH----------------TFSPVIK-------LSTV-----LVRQVATDNKALFVISMSDNGAQIYELVAQTVSEKT 358 (385)
T ss_dssp -------------------CCCSEEE-------GGGE-----EEEECCC-CCEEEEEEECSSCEEEEEEECSSHHHHH
T ss_pred CCc----------------CCCCcee-------cccc-----cccccccCCceEEEEEEcCCCceEEEEEcCCHHHHH
Confidence 111 1237899 9999 999999899999999987778899999999999873
No 6
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=100.00 E-value=4.7e-42 Score=328.72 Aligned_cols=244 Identities=19% Similarity=0.333 Sum_probs=211.0
Q ss_pred CHHHHHHHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCC
Q psy11457 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNP 80 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~ 80 (315)
|+++|..||..|+++..+| ....||++|+++.+ .| ++|..||+||+.|.+.++++++.++.|++|+++++..+
T Consensus 74 i~~~h~~fl~~L~~~~~~~-~~~~ig~~f~~~~~-----~~-~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~ 146 (406)
T 2vrw_B 74 LFSVHTHFLKELKDALAGP-GATTLYQVFIKYKE-----RF-LVYGRYCSQVESASKHLDQVATAREDVQMKLEECSQRA 146 (406)
T ss_dssp HHHHHHHHHHHHHHHHHSG-GGTTHHHHHHHHTT-----GG-GHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-CccHHHHHHHHHHH-----HH-HHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Confidence 5789999999999998875 46789999999985 34 89999999999999999999989999999999999999
Q ss_pred cccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy11457 81 LCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTP 160 (315)
Q Consensus 81 ~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~~ 160 (315)
.+++++|.+||++|||||+||||||++|+|+| ++|+|+..|+.|++.+++++..||+.+++.|+..++.+|+.+|++.+
T Consensus 147 ~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t-~~~~d~~~l~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~~~ 225 (406)
T 2vrw_B 147 NNGRFTLRDLLMVPMQRVLKYHLLLQELVKHT-QDATEKENLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLD 225 (406)
T ss_dssp HTTSCCHHHHTTHHHHHHTTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEESCS
T ss_pred ccCCcchHHHhhhHHHHHhhHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999 89999999999999999999999999999999999999999999753
Q ss_pred CCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecCCeeEEeCCCCCccccCCCCCCC
Q psy11457 161 FEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSGPPP 240 (315)
Q Consensus 161 ~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~~k~~~k~~~~~~~~~~~~~~~~ 240 (315)
.. +. . .++++++|.+.+.... +.+..++++|||+|+||+|++++++|.++
T Consensus 226 ~~-----l~-~-------~grli~~G~l~~~~~~-~~~~~~~~~fLF~d~Ll~~k~k~~~y~~k---------------- 275 (406)
T 2vrw_B 226 QS-----LA-N-------YGRPKIDGELKITSVE-RRSKTDRYAFLLDKALLICKRRGDSYDLK---------------- 275 (406)
T ss_dssp SC-----GG-G-------GCSEEEEEEEEEECSS-CCSCEEEEEEEESSEEEEEEEETTEEEEE----------------
T ss_pred cc-----cc-c-------cCcccccccEEEEecC-CCccceEEEEecCCEEEEEEecCCceEEE----------------
Confidence 21 11 1 1459999999876532 23467999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCccccccccCccccccccccccC-------ceEEEEEcCCCCCeeEEEEcCCccc
Q psy11457 241 PSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDR-------SALYLVNTSQHSAQIYDLVASSASE 313 (315)
Q Consensus 241 ~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~~~-------~~~~li~~~~~~~~~~~l~a~s~~e 313 (315)
..|+ |..+ .|++.+++. .+|.+++.. +++.|+|.|+|++|
T Consensus 276 -------------------~~i~-------l~~~-----~v~~~~~~~~~~~~~~~~F~i~~~~--~~~~~~l~a~s~~e 322 (406)
T 2vrw_B 276 -------------------ASVN-------LHSF-----QVRDDSSGERDNKKWSHMFLLIEDQ--GAQGYELFFKTREL 322 (406)
T ss_dssp -------------------EEEE-------TTTE-----EEEC--------CTTCEEEEEEETT--CSCEEEEEESSHHH
T ss_pred -------------------EEec-------ccce-----eeeecCCCCccCCccceeeEEEecC--CCceEEEeCCCHHH
Confidence 5688 8888 888776442 677777653 57789999999998
Q ss_pred cC
Q psy11457 314 RK 315 (315)
Q Consensus 314 rk 315 (315)
|+
T Consensus 323 k~ 324 (406)
T 2vrw_B 323 KK 324 (406)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 7
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=100.00 E-value=4.8e-41 Score=321.44 Aligned_cols=246 Identities=19% Similarity=0.326 Sum_probs=211.4
Q ss_pred CHHHHHHHHHHHHHhHhcC-CCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhC
Q psy11457 1 MLDIHSTFNNSMKLKRKES-PVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELN 79 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~-~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~ 79 (315)
|+++|..||..|+++...| |.+..||++|+++++. | ++|..||+||+.|...+.+++ +++.|++|++.|+..
T Consensus 93 I~~~h~~fL~~Le~~~~~~~~~~~~ig~ifl~~~~~-----f-~~Y~~Y~~n~~~a~~~l~~~~-~~~~f~~fl~~~~~~ 165 (402)
T 2dfk_A 93 IYRFQMGFVRDLEKQYNNDDPHLSEIGPCFLEHQDG-----F-WIYSEYCNNHLDACMELSKLM-KDSRYQHFFEACRLL 165 (402)
T ss_dssp HHHHHHHHHHHHHHHCCSSCGGGCCCHHHHHHTTTG-----G-GHHHHHHHHHHHHHHHHHHHT-TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhh-----h-HHHHHHHHhhHHHHHHHHHHH-cChHHHHHHHHHHhh
Confidence 5789999999999998765 4568999999999863 4 899999999999999999985 579999999999998
Q ss_pred CcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy11457 80 PLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRT 159 (315)
Q Consensus 80 ~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~ 159 (315)
+.|++++|.+||++|||||+||||||++|+|+|+++|+|+..|..|++.+++++..||+.++++|+..++.+|+.+|+++
T Consensus 166 ~~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~t~~~~~d~~~L~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~~ 245 (402)
T 2dfk_A 166 QQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQINERKRRLENIDKIAQWQASVLDW 245 (402)
T ss_dssp TTCCSCCHHHHHTHHHHHHHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSBTC
T ss_pred hhcccCCHHHHHhHHHHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEec---CCeeEEeCCCCCccccCCC
Q psy11457 160 PFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQ---DDSKSFDSPSNSCEAVSSS 236 (315)
Q Consensus 160 ~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~---~~k~~~k~~~~~~~~~~~~ 236 (315)
+.. .++. +.|+|+++|.+.+.... .++..++++|||+|+||+|+++ ++.|.++
T Consensus 246 ~~~----~l~~-------~~r~Li~~G~l~~~~~~-~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k------------ 301 (402)
T 2dfk_A 246 EGD----DILD-------RSSELIYTGEMAWIYQP-YGRNQQRVFFLFDHQMVLCKKDLIRRDILYYK------------ 301 (402)
T ss_dssp CSS----CGGG-------TCCCEEEEEEEEEESST-TCCCEEEEEEEETTEEEEEEECSSCTTCEEEE------------
T ss_pred CCc----cccc-------cccceEEeceEEEEecc-CCceEEEEEEeeCCEEEEEEeccccCCceEEe------------
Confidence 311 1111 35999999999977541 2346799999999999999975 4678888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccCCCccccccccCcccccccccccc---------CceEEEEEcCCCCCeeEEEE
Q psy11457 237 GPPPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVIND---------RSALYLVNTSQHSAQIYDLV 307 (315)
Q Consensus 237 ~~~~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~~---------~~~~~li~~~~~~~~~~~l~ 307 (315)
..|+ |..+ .|.+.... +.+|.+++.. +.+.|.|.
T Consensus 302 -----------------------~~i~-------l~~~-----~v~~~~d~~~~~~~~~~~~~F~i~~~~--~~~~~~l~ 344 (402)
T 2dfk_A 302 -----------------------GRID-------MDKY-----EVIDIEDGRDDDFNVSMKNAFKLHNKE--TEEVHLFF 344 (402)
T ss_dssp -----------------------EEEE-------GGGE-----EEEECCSEECSSSCCEESSEEEEEESS--SSCEEEEE
T ss_pred -----------------------eeee-------ccce-----EEEecCCCCccccccccceeEEEEECC--CCeEEEEE
Confidence 4677 8888 77776532 3577777654 46799999
Q ss_pred cCCcccc
Q psy11457 308 ASSASER 314 (315)
Q Consensus 308 a~s~~er 314 (315)
|+|++||
T Consensus 345 a~s~~eK 351 (402)
T 2dfk_A 345 AKKLEEK 351 (402)
T ss_dssp CSSHHHH
T ss_pred eCCHHHH
Confidence 9999987
No 8
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=100.00 E-value=1.2e-41 Score=319.34 Aligned_cols=243 Identities=18% Similarity=0.344 Sum_probs=188.6
Q ss_pred CHHHHHHHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCC
Q psy11457 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNP 80 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~ 80 (315)
|+++|..|+..|+++..+|+....||++|+++++. | ++|..||+||+.|...++++ ++|+.|++|+++|+.+|
T Consensus 70 i~~~h~~fl~~L~~~~~~~~~~~~ig~~f~~~~~~-----~-~~Y~~Y~~n~~~a~~~l~~~-~~~~~f~~fl~~~~~~~ 142 (346)
T 2z0q_A 70 LIPLHEELLSQLRDVRKPDGSTEHVGPILVGWLPC-----L-SSYDSYCSNQVAAKALLDHK-KQDHRVQDFLQRCLESP 142 (346)
T ss_dssp HHHHHHHHHHHHHHHCCTTSCCSCCHHHHHHHGGG-----G-GHHHHHHHHHHHHHHHHHHH-TTCHHHHCC--------
T ss_pred HHHHHHHHHHHHHHHhccCCccchHHHHHHHHhhH-----H-HHHHHHHHCHHHHHHHHHHh-hcCHHHHHHHHHHHhCc
Confidence 57899999999999999998899999999999864 3 79999999999999999996 78999999999999999
Q ss_pred cccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy11457 81 LCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTP 160 (315)
Q Consensus 81 ~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~~ 160 (315)
.|++++|.+||++|||||+||||||++|+|+|+++|+|+..|+.|++.+++++..||+.+++.|+...+..++...++.
T Consensus 143 ~~~~l~L~~~L~~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~~~~v~~~iN~~~~~~e~~~~~~~l~~~~~~~- 221 (346)
T 2z0q_A 143 FSRKLDLWNFLDIPRSRLVKYPLLLREILRHTPNDNPDQQHLEEAINIIQGIVAEINTKTGESECRYYKERLLYLEEGQ- 221 (346)
T ss_dssp -----CTTTGGGHHHHHHHHHHHHHHHHHHTSCTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCSTTC-
T ss_pred cCCCCCHHHHHHHHHHHHhhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999988776665432221
Q ss_pred CCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEec--CCe--eE-EeCCCCCccccCC
Q psy11457 161 FEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQ--DDS--KS-FDSPSNSCEAVSS 235 (315)
Q Consensus 161 ~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~--~~k--~~-~k~~~~~~~~~~~ 235 (315)
+.+++. ++|.|+++|.+.+. ++.++++|||+|+||+|+++ +++ |. ++
T Consensus 222 ----~~~l~~-------~~r~li~~G~l~~~------~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~v~k----------- 273 (346)
T 2z0q_A 222 ----KDSLID-------SSRVLCCHGELKNN------RGVKLHVFLFQEVLVITRAVTHNEQLCYQLYR----------- 273 (346)
T ss_dssp ----CCHHHH-------TCCCEEEEEEEEET------TSCEEEEEEESSEEEEEEEEEETTEEEEEESS-----------
T ss_pred ----CCcccc-------CCeEEEEeceeEEC------CCcEEEEEECCCcEEEEEEeccCCceeeeeec-----------
Confidence 222332 35999999999742 23699999999999999963 443 33 34
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccCCCccccccccCcccccccccccc------------------CceEEEEEcC
Q psy11457 236 SGPPPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVIND------------------RSALYLVNTS 297 (315)
Q Consensus 236 ~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~~------------------~~~~~li~~~ 297 (315)
..|+ |..+ .|++..++ +.+|.++...
T Consensus 274 ------------------------~~i~-------l~~l-----~v~~~~d~~~~~~~s~~g~~~~~~~~~~~F~i~~~~ 317 (346)
T 2z0q_A 274 ------------------------QPIP-------VKDL-----TLEDLQDGEVRLGGSLRGAFSNNERVKNFFRVSFKN 317 (346)
T ss_dssp ------------------------CCEE-------GGGC-----EEEECCTTTSCCCSCC--CCSHHHHTSSEEEEEECC
T ss_pred ------------------------CCcc-------hhhc-----eeeecCCCccccCccccccccCCcccccceEEEEec
Confidence 3466 6666 66655432 3566666554
Q ss_pred CCCCeeEEEEcCCccccC
Q psy11457 298 QHSAQIYDLVASSASERK 315 (315)
Q Consensus 298 ~~~~~~~~l~a~s~~erk 315 (315)
..+.+.|.|.|+|++||+
T Consensus 318 ~~~~~~~~l~a~s~~ek~ 335 (346)
T 2z0q_A 318 GSQSQTHSLQANDTFNKQ 335 (346)
T ss_dssp GGGCEEEEEECSSHHHHH
T ss_pred CCCCceEEEEECCHHHHH
Confidence 334689999999999873
No 9
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-40 Score=320.81 Aligned_cols=243 Identities=18% Similarity=0.220 Sum_probs=202.5
Q ss_pred CHHHHHHHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCC
Q psy11457 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNP 80 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~ 80 (315)
|+++|..||..|+++..+|.....||++|+++++ .| ++|..||+||+.|...+++++++++.|+.|+++++..+
T Consensus 82 I~~~h~~fL~~L~~~~~~~~~~~~ig~ifl~~~~-----~~-~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~ 155 (434)
T 3mpx_A 82 IHDLHQGILEELEERLSNWESQQKVADVFLAREQ-----GF-DHHATHILQFDRYLGLLSENCLHSPRLAAAVREFEQSV 155 (434)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCCCTHHHHTTTT-----TH-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHhccCcccHHHHHHHhhH-----HH-HHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHcCc
Confidence 5789999999999999999889999999999986 34 79999999999999999999899999999999999999
Q ss_pred cccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy11457 81 LCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTP 160 (315)
Q Consensus 81 ~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~~ 160 (315)
.|++++|.+||++|||||+||+|||++|+|+|+++|+|+..|..|++.+++++..+|+.++++|+..+|.+++.+|++.+
T Consensus 156 ~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~iN~~~~~~e~~~~l~~l~~~i~~~~ 235 (434)
T 3mpx_A 156 QGGSQTAKHRLLRVVQRLFQYQVLLTDYLNNLCPDSAEYDNTQGALSLISKVTDRANDSMEQGENLQKLVHIEHSVRGQG 235 (434)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHEETCC
T ss_pred ccCCCCHHHHHhhhHHhhhHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999742
Q ss_pred CCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEe-cCCeeEEeCCCCCccccCCCCCC
Q psy11457 161 FEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQK-QDDSKSFDSPSNSCEAVSSSGPP 239 (315)
Q Consensus 161 ~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~-~~~k~~~k~~~~~~~~~~~~~~~ 239 (315)
.+..++|.|+++|.+.+..+ .+..++++|||+|+||+|++ ++++|.++
T Consensus 236 -------------~l~~~~r~li~~g~l~~~~~---~~~~~r~~fLF~d~Ll~~k~~~~~~y~~k--------------- 284 (434)
T 3mpx_A 236 -------------DLLQPGREFLKEGTLMKVTG---KNRRPRHLFLMNDVLLYTYPQKDGKYRLK--------------- 284 (434)
T ss_dssp -------------CCCCTTCCEEECCEEEEEET---TEEEEEEEEEESSEEEEEEECTTSCEEEE---------------
T ss_pred -------------ccccCCcceEecceEEEEeC---CCceEEEEEEECCEEEEEEecCCCeEEEE---------------
Confidence 12234699999999987653 34679999999999999996 56799998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCccccccccCccccccccccccC-ceEEEEEcCCCCCeeEEEEcCCccccC
Q psy11457 240 PPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDR-SALYLVNTSQHSAQIYDLVASSASERK 315 (315)
Q Consensus 240 ~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~~~-~~~~li~~~~~~~~~~~l~a~s~~erk 315 (315)
..|+ |..+ .|.+..++. .-.|.|.+. ...|.|.|+|++||+
T Consensus 285 --------------------~~i~-------L~~l-----~v~~~~~~~~~~~f~i~~~---~~~~~l~a~s~~ek~ 326 (434)
T 3mpx_A 285 --------------------NTLA-------VANM-----KVSRPVMEKVPYALKIETS---ESCLMLSASSCAERD 326 (434)
T ss_dssp --------------------EEEE-------C----------CCCCCTTSCSEEEEECS---SCEEEEECSSHHHHH
T ss_pred --------------------EEEE-------cCCc-----EEEecCCCCCCeeEEEecC---CeEEEEecCCHHHHH
Confidence 5688 8888 776654432 233334332 336999999999873
No 10
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=100.00 E-value=3.1e-40 Score=321.46 Aligned_cols=247 Identities=19% Similarity=0.315 Sum_probs=210.0
Q ss_pred CHHHHHHHHHHHHHhHhcC-CCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhC
Q psy11457 1 MLDIHSTFNNSMKLKRKES-PVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELN 79 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~-~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~ 79 (315)
|+++|..||..|+++...+ +.+..||++|+++++ .| ++|..||+||+.|...+++++ +++.|.+|++.|+..
T Consensus 170 I~~~h~~fL~~Le~~~~~~~~~~~~ig~~fl~~~~-----~f-~~Y~~Y~~n~~~a~~~l~~~~-~~~~f~~f~~~~~~~ 242 (466)
T 2pz1_A 170 IYRCQKAFVKALEQRFNRERPHLSELGACFLEHQA-----DF-QIYSEYCNNHPNACVELSRLT-KLSKYVYFFEACRLL 242 (466)
T ss_dssp HHHHHHHHHHHHHHHCCSSCGGGCCCHHHHHHTHH-----HH-TTHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCccchHHHHHHHhhH-----HH-HHHHHHHHhhHHHHHHHHHHH-hccHHHHHHHHHHHh
Confidence 5789999999999998764 567899999999974 45 999999999999999999996 578999999999988
Q ss_pred CcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy11457 80 PLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRT 159 (315)
Q Consensus 80 ~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~ 159 (315)
+.|++++|.+||++|||||+||+|||++|+|+|+++|+|+..|..|++.+++++..||+.++++|+..+|.+|+.+|++.
T Consensus 243 ~~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~~ 322 (466)
T 2pz1_A 243 QKMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDW 322 (466)
T ss_dssp HTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBTC
T ss_pred hhhccCCHHHHhhhHHHHhhhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEec---CCeeEEeCCCCCccccCCC
Q psy11457 160 PFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQ---DDSKSFDSPSNSCEAVSSS 236 (315)
Q Consensus 160 ~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~---~~k~~~k~~~~~~~~~~~~ 236 (315)
... .++. +.|+|+++|.+.+... .+++..++++|||+|+||+|+++ +++|.++
T Consensus 323 ~~~----~l~~-------~~r~li~~G~l~~~~~-~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k------------ 378 (466)
T 2pz1_A 323 EGE----DLLV-------RSSELIYSGELTRVTQ-PQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYK------------ 378 (466)
T ss_dssp CSS----CHHH-------HCSCEEEEEEEEEECT-TTCCEEEEEEEEETTEEEEEEECSSCTTCEEEE------------
T ss_pred CCc----cccc-------ccceeEEeeeEEEEec-CCCCeeEEEEEEECCEEEEEEeccccCCceEEe------------
Confidence 311 1222 2489999999987653 12456799999999999999974 5678888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccCCCccccccccCcccccccccccc---------CceEEEEEcCCCCCeeEEEE
Q psy11457 237 GPPPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVIND---------RSALYLVNTSQHSAQIYDLV 307 (315)
Q Consensus 237 ~~~~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~~---------~~~~~li~~~~~~~~~~~l~ 307 (315)
..|+ |..+ .|.++.+. +.+|.+++.. +.+.|.|+
T Consensus 379 -----------------------~~i~-------l~~~-----~v~~~~d~~~~~~~~~~~~~F~i~~~~--~~~~~~l~ 421 (466)
T 2pz1_A 379 -----------------------GRLD-------MDGL-----EVVDLEDGKDRDLHVSIKNAFRLHRGA--TGDSHLLC 421 (466)
T ss_dssp -----------------------EEEE-------TTTC-----EEEECCSBSCCSSCCCBCEEEEEECSS--SCCEEEEE
T ss_pred -----------------------eeee-------ccce-----EEEeCCCCcccccccccceeEEEEeCC--CCeEEEEE
Confidence 4577 7777 77766543 2456666543 46799999
Q ss_pred cCCccccC
Q psy11457 308 ASSASERK 315 (315)
Q Consensus 308 a~s~~erk 315 (315)
|+|++||+
T Consensus 422 a~s~~eK~ 429 (466)
T 2pz1_A 422 TRKPEQKQ 429 (466)
T ss_dssp ESSHHHHH
T ss_pred eCCHHHHH
Confidence 99999873
No 11
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=100.00 E-value=3.3e-40 Score=329.68 Aligned_cols=244 Identities=20% Similarity=0.318 Sum_probs=212.0
Q ss_pred CHHHHHHHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCC
Q psy11457 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNP 80 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~ 80 (315)
|+++|+.||..|+++..+| ....||++|+++.+ .| ++|..||+||+.|...++++++.++.|+.|+++++..+
T Consensus 246 I~~~h~~fL~~L~~~~~~~-~~~~ig~if~~~~~-----~f-~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~ 318 (587)
T 3ky9_A 246 LLRVHTHFLKEMKEALGTP-GAANLYQVFIKYKE-----RF-LVYGRYCSQVESASKHLDRVAAAREDVQMKLEECSQRA 318 (587)
T ss_dssp HHHHHHHHHHHHHHHHHSS-TTCSHHHHHHHTTT-----GG-GHHHHHHHHHHHHHHHHHHHHHTCHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-CccHHHHHHHHHHH-----hc-chHHHHHhChHHHHHHHHHHHhcCHHHHHHHHHHHhcc
Confidence 5789999999999999986 46899999999975 34 89999999999999999999999999999999999999
Q ss_pred cccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy11457 81 LCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTP 160 (315)
Q Consensus 81 ~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~~ 160 (315)
.|++++|.+||++|||||+||||||++|+|+|| +|+|+..|+.|++.+++++..||+.+++.|+..+|.+|+++|++.+
T Consensus 319 ~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~T~-~~~d~~~L~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~~~ 397 (587)
T 3ky9_A 319 NNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQ-EAMEKENLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLD 397 (587)
T ss_dssp HSSSCCHHHHHHHHHHHHTTHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEETCC
T ss_pred ccCCCCHHHHHhHHHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999999999999999999999999999999998 5899999999999999999999999999999999999999999754
Q ss_pred CCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecCCeeEEeCCCCCccccCCCCCCC
Q psy11457 161 FEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSGPPP 240 (315)
Q Consensus 161 ~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~~k~~~k~~~~~~~~~~~~~~~~ 240 (315)
... . . . ++++++|.+.+.... +.+..++++|||+|+||+|++++++|.++
T Consensus 398 ~~l-----~-~------~-grll~~G~l~~~~~~-~~~~~~r~~fLF~d~Ll~~k~~~~~y~~k---------------- 447 (587)
T 3ky9_A 398 QSL-----A-H------Y-GRPKIDGELKITSVE-RRSKMDRYAFLLDKALLICKRRGDSYDLK---------------- 447 (587)
T ss_dssp SCG-----G-G------G-CCEEEEEEEEEECSS-CCSCEEEEEEEETTEEEEEEEETTEEEEE----------------
T ss_pred cch-----h-h------c-CceEEEeeEEEEecc-CCCcceEEEEEECCEEEEEEecCCEEEee----------------
Confidence 221 1 1 1 448999999876542 34467999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCccccccccCcccccccccccc-------CceEEEEEcCCCCCeeEEEEcCCccc
Q psy11457 241 PSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVIND-------RSALYLVNTSQHSAQIYDLVASSASE 313 (315)
Q Consensus 241 ~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~~-------~~~~~li~~~~~~~~~~~l~a~s~~e 313 (315)
..|+ |..+ .|++++.+ +.+|++++.. +++.|+|.|+|++|
T Consensus 448 -------------------~~i~-------L~~~-----~v~~~~~~~~~~~~~~~~f~i~~~~--~~~~~~L~A~S~ee 494 (587)
T 3ky9_A 448 -------------------DFVN-------LHSF-----QVRDDSSGDRDNKKWSHMFLLIEDQ--GAQGYELFFKTREL 494 (587)
T ss_dssp -------------------EEEE-------GGGE-----EEEEC-----CCCTTCEEEEEEETT--C---CEEEESSHHH
T ss_pred -------------------eeec-------hhhc-----eeeecCCCCcccccccceeEEEEcC--CCceEEEEeCCHHH
Confidence 5788 9999 88887643 2678888754 67899999999998
Q ss_pred cC
Q psy11457 314 RK 315 (315)
Q Consensus 314 rk 315 (315)
|+
T Consensus 495 K~ 496 (587)
T 3ky9_A 495 KK 496 (587)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 12
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=100.00 E-value=2.4e-39 Score=304.54 Aligned_cols=243 Identities=12% Similarity=0.133 Sum_probs=195.7
Q ss_pred CHHHHHHHHHHHHHhHhcC---CCCCChHHHHHHhcccchhHHHHHHHHHHHHhH--HHHHHHHHHHHhcChHHHHHHHH
Q psy11457 1 MLDIHSTFNNSMKLKRKES---PVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQ--QIALESLRERRRKDSRLNAFLTE 75 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~---~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~--~~a~~~l~~~~~~~~~f~~fl~~ 75 (315)
|+++|..|+..|+++...+ .....||++|+++++. .++++|..||+|| +.|.+.++++ .+++.|..|+++
T Consensus 55 I~~~h~~fl~~L~~~~~~~~~~~~~~~ig~~f~~~~~~----~~f~~Y~~Y~~n~~~~~a~~~l~~~-~~~~~f~~~l~~ 129 (354)
T 1dbh_A 55 IHELSVKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEE----LAFDPYESYARDILRPGFHDRFLSQ-LSKPGAALYLQS 129 (354)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTSSSCCCHHHHHHHHHT----TTTHHHHHHHHHHTSTTHHHHHHHH-HHSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHhHH----hhhhHHHHHHHhccchHHHHHHHHH-hcChHHHHHHHH
Confidence 5789999999999987653 3448899999999751 1348999999999 6677999998 589999999988
Q ss_pred H-HhCCcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHH----------------
Q psy11457 76 A-ELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQ---------------- 138 (315)
Q Consensus 76 ~-e~~~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~---------------- 138 (315)
+ +..+.|++++|.+||++|||||+||||||++|+|+||+ |+|+..|+.|++.+++++..||+
T Consensus 130 ~~~~~~~~~~~~L~~~Li~PvQRi~rY~LLL~~llk~t~~-~~d~~~L~~Al~~~~~v~~~in~~~~~~~~~r~~~e~~~ 208 (354)
T 1dbh_A 130 IGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSED-QEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSESAC 208 (354)
T ss_dssp HCTTHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHHTC-
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhchHHHHHHHHHhcCCC-CccHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhh
Confidence 4 44577899999999999999999999999999999985 99999999999999999998876
Q ss_pred ------HHHHHHHHHHHHHHHhhcCCCCCCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEE
Q psy11457 139 ------AVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIV 212 (315)
Q Consensus 139 ------~~~~~e~~~~L~~i~~~l~~~~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll 212 (315)
.+++.++..++.++|.+|++++... +. -+.|+|+++|.+.+. | +..++++|||+|+||
T Consensus 209 ~~~~ne~~r~~e~~~~l~~lq~~i~~~~~~~----l~-------~~~r~li~eG~l~~~---g--~~~~~~~fLF~d~Ll 272 (354)
T 1dbh_A 209 RFYSQQMKGKQLAIKKMNEIQKNIDGWEGKD----IG-------QCCNEFIMEGTLTRV---G--AKHERHIFLFDGLMI 272 (354)
T ss_dssp ------------CTHHHHHHHTTEESCCSSC----GG-------GTCCCEEEEEEEEET---T--CSSCEEEEEESSEEE
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhcCCCCcc----cc-------cccceEEEEeeEEEE---e--cCceEEEEEeCCEEE
Confidence 6667788899999999999764211 11 135999999999875 2 356999999999999
Q ss_pred EEEec----------CCeeEEeCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCccccccccCccccccc
Q psy11457 213 LLQKQ----------DDSKSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQ 282 (315)
Q Consensus 213 ~~~~~----------~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r 282 (315)
+|+++ +++|.++ +.|+ |..+ .|.
T Consensus 273 ~~k~~~~~~~~~~~~~~~y~~k-----------------------------------~~i~-------l~~~-----~v~ 305 (354)
T 1dbh_A 273 CCKSNHGQPRLPGASNAEYRLK-----------------------------------EKFF-------MRKV-----QIN 305 (354)
T ss_dssp EEEECTTCCCCTTSCCCSEEEE-----------------------------------EEEE-------SCSC-----EEE
T ss_pred EEecCCCCCCCCCCCCcceeEE-----------------------------------EEEe-------ccce-----EEE
Confidence 99985 3567777 5788 8888 888
Q ss_pred ccccc---CceEEEEEcCCCCCeeEEEEcCCccccC
Q psy11457 283 EVIND---RSALYLVNTSQHSAQIYDLVASSASERK 315 (315)
Q Consensus 283 ~~~~~---~~~~~li~~~~~~~~~~~l~a~s~~erk 315 (315)
++++. +.+|.+++.. .+.|.|.|+|++||+
T Consensus 306 ~~~d~~~~~~~F~i~~~~---~~~~~l~a~s~~ek~ 338 (354)
T 1dbh_A 306 DKDDTNEYKHAFEIILKD---ENSVIFSAKSAEEKN 338 (354)
T ss_dssp ECCCSSSCCSEEEECCTT---SCCEEEECSSHHHHH
T ss_pred eCCcccccCccEEEecCC---CCEEEEEeCCHHHHH
Confidence 87533 4667665543 468999999999873
No 13
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=100.00 E-value=8.5e-38 Score=296.41 Aligned_cols=268 Identities=17% Similarity=0.214 Sum_probs=198.8
Q ss_pred CHHHHHHHHHHHHHhHhcCCC-------------CCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcCh
Q psy11457 1 MLDIHSTFNNSMKLKRKESPV-------------VGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDS 67 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~~~-------------v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~ 67 (315)
|+++|..||..|+++...||. +..||++|+.+.+ .| ++|..||+||+.|.+.+.++ ++|+
T Consensus 62 I~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~~~~~~ig~~f~~~~~-----~f-~~Y~~Y~~n~~~a~~~l~~~-~~~~ 134 (377)
T 1foe_A 62 MVEFQVEFLKTLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYAD-----RF-KLYSAFCASHTKVPKVLVKA-KTDT 134 (377)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCGGGCCSGGGGHHHHHHHHHHHHHHTT-----GG-GGHHHHHHHTTTHHHHHTTT-TTCH
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhhhhhhhhHHHHHHHHHHHHHH-----HH-HHHHHHHHhHHHHHHHHHHH-hcCH
Confidence 578999999999999887653 2469999999975 34 89999999999999999887 7899
Q ss_pred HHHHHHHHHHhCCcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11457 68 RLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQH 147 (315)
Q Consensus 68 ~f~~fl~~~e~~~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~ 147 (315)
.|++|+++++..+ +++++|.+||++|||||+||||||++|+|+||++|+|+..|..|++.+++++..||+.++..|+..
T Consensus 135 ~f~~fl~~~~~~~-~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~~~~v~~~iNe~~r~~e~~~ 213 (377)
T 1foe_A 135 AFKAFLDAQNPRQ-QHSSTLESYLIKPIQRVLKYPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHINEMQKIHEEFG 213 (377)
T ss_dssp HHHHHHHHHCTTC-CGGGSHHHHTTHHHHHHTTHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc-ccCcCHHHHhccchhhhccHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988765 789999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHH-HHhhcCCCCCCccCCcchhhhccccCCCceEEEEeeEEEEeec---CC-CcceEEEEEecCCcEEEEEecCCeeE
Q psy11457 148 RLAE-IQKRLDRTPFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIAT---TR-QKLIELYVLLLEDIIVLLQKQDDSKS 222 (315)
Q Consensus 148 ~L~~-i~~~l~~~~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~---~~-~k~~~~~~fLf~d~Ll~~~~~~~k~~ 222 (315)
++.+ +...+.+...+. .+++.++|+++|.+.|..+. |+ ++..++++|||+|+||+|.+...+-.
T Consensus 214 ~~~~~l~~~~~~~~~~~-----------~~~~~g~ll~~~~~~~~~~~~~~~~~~k~~~~~~fLF~d~lll~~k~~~~~k 282 (377)
T 1foe_A 214 AVFDQLIAEQTGEKKEV-----------ADLSMGDLLLHTSVIWLNPPASLGKWKKEPELAAFVFKTAVVLVYKDGSKQK 282 (377)
T ss_dssp HHHHHHHTTCSSCSCSS-----------CCCCGGGEEEEEEEEESSCCHHHHTTCSSCEEEEEEETTEEEEEECCCCCSC
T ss_pred HHHHHHHHhcccccccc-----------cccCccceeeecceeeccCchhhccccccceEEEEEcCCeEEEEeccccccc
Confidence 8654 333333321111 12233568999999886421 22 34579999999999999876432110
Q ss_pred EeCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCccccccccCcccccccccccc---CceEEEEE-cC-
Q psy11457 223 FDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVIND---RSALYLVN-TS- 297 (315)
Q Consensus 223 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~~---~~~~~li~-~~- 297 (315)
-+ .+ +....| ...+.+.-.....|+ |..+ .|+++++. .+++|.|. ..
T Consensus 283 ~~-----~~------~~~~~s-----~~~~~~~y~~k~~i~-------l~~~-----~v~~~~~~~~~~~~~f~i~~~~~ 334 (377)
T 1foe_A 283 KK-----LV------GSHRLS-----IYEEWDPFRFRHMIP-------TEAL-----QVRALPSADAEANAVCEIVHVKS 334 (377)
T ss_dssp CS-----SC------CCTTTT-----CSSCSCSCCCEEEEE-------GGGE-----EEECCCCTTTTSCCEEEEEECCB
T ss_pred cc-----cc------cccccc-----cccCCCceeEeeecc-------ccce-----EEEecCCCccchhhHHHHHhccc
Confidence 00 00 000000 000111112236788 9999 99987743 34666553 21
Q ss_pred --CCC-CeeEEEEcCCccccC
Q psy11457 298 --QHS-AQIYDLVASSASERK 315 (315)
Q Consensus 298 --~~~-~~~~~l~a~s~~erk 315 (315)
... .++|+|+|+|++||+
T Consensus 335 ~~~~~~~~~~~l~A~s~~eK~ 355 (377)
T 1foe_A 335 ESEGRPERVFHLCCSSPESRK 355 (377)
T ss_dssp TGGGBCCEEEEEEESSHHHHH
T ss_pred cccCCCcceEEEEeCCHHHHH
Confidence 123 469999999999973
No 14
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=100.00 E-value=1.3e-35 Score=279.08 Aligned_cols=226 Identities=19% Similarity=0.295 Sum_probs=181.6
Q ss_pred CHHHHH-HHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhC
Q psy11457 1 MLDIHS-TFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELN 79 (315)
Q Consensus 1 ll~~H~-~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~ 79 (315)
|+++|. .||..|+++...+ ..||++|+++++ .| ++|..||+|++.|.++++++. .+ .|+++|...
T Consensus 68 I~~~h~~~fl~~Le~~~~~~---~~ig~~fl~~~~-----~f-~~Y~~Y~~n~~~a~~~l~~~~-~~----~f~~~~~~~ 133 (353)
T 1kz7_A 68 IYHFHNRIFLRELESCIDCP---ELVGRCFLERME-----EF-QIYEKYCQNKPRSESLWRQCS-DC----PFFQECQKK 133 (353)
T ss_dssp HHHHHHHTHHHHHHTTTTCG---GGHHHHHHTTTT-----GG-GHHHHHHHHHHHHHHHHHHHT-TC----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCH---HHHHHHHHHhhH-----HH-HHHHHHHhChHHHHHHHHHhh-cc----hHHHHHHHh
Confidence 578996 8999999988754 789999999986 34 999999999999999999884 44 455566553
Q ss_pred CcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy11457 80 PLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRT 159 (315)
Q Consensus 80 ~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~ 159 (315)
.|++++|.+||++|||||+||||||++|+|+|++ ++|+..|+.|++.+++++..||+.+++ ..|.+.
T Consensus 134 -~~~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~-~~d~~~L~~Al~~i~~v~~~iN~~~~~-----------~~i~~~ 200 (353)
T 1kz7_A 134 -LDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKH-CEGAEDLQEALSSILGILKAVNDSMHL-----------IAITGY 200 (353)
T ss_dssp -HTCSSCHHHHHTHHHHHHHHHHHHHHHHHHTCTT-STTHHHHHHHHHHHHHHHHHHHHHHHH-----------TTEESC
T ss_pred -cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-CccHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhCC
Confidence 4789999999999999999999999999999995 799999999999999999999998753 234443
Q ss_pred CCCccCCcchhhhccccCCCceEEEEeeEEEEee--cC--------CCcceEEEEEecCCcEEEEEecC---------Ce
Q psy11457 160 PFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIA--TT--------RQKLIELYVLLLEDIIVLLQKQD---------DS 220 (315)
Q Consensus 160 ~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~--~~--------~~k~~~~~~fLf~d~Ll~~~~~~---------~k 220 (315)
+. .+ . ..|+|+++|.+....+ .| +.+..++++|||+|+||+|+++. .+
T Consensus 201 ~~-----~L-~-------~~g~ll~~g~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~~ 267 (353)
T 1kz7_A 201 DG-----NL-G-------DLGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPS 267 (353)
T ss_dssp CS-----CG-G-------GGCCEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCE
T ss_pred CC-----Ch-h-------HhhhhheecceEEEecCccccchhhhhhccCcceeEEEEECCEEEEEEeccccccCCCCCCe
Confidence 21 11 1 1266999999985432 22 23467999999999999999752 57
Q ss_pred eEEeCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCccccccccCcccccccccc-ccCceEEEEEcCCC
Q psy11457 221 KSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVI-NDRSALYLVNTSQH 299 (315)
Q Consensus 221 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~-~~~~~~~li~~~~~ 299 (315)
|.++ ..|+ |..+ .+.+.+ +++.+|.++..+
T Consensus 268 y~~k-----------------------------------~~i~-------l~~~-----~v~e~~~~~~~~F~i~~~~-- 298 (353)
T 1kz7_A 268 YSYK-----------------------------------QSLN-------MTAV-----GITENVKGDTKKFEIWYNA-- 298 (353)
T ss_dssp EEEE-----------------------------------EEEE-------GGGE-----EEECCBTTBTTEEEEEETT--
T ss_pred EEEE-----------------------------------EEeE-------cccc-----eeeEcCCCCCceEEEEECC--
Confidence 8888 5688 8888 888765 567888887754
Q ss_pred CCeeEEEEcCCccccC
Q psy11457 300 SAQIYDLVASSASERK 315 (315)
Q Consensus 300 ~~~~~~l~a~s~~erk 315 (315)
+++.|.|.|+|++||+
T Consensus 299 ~~~~~~l~a~s~~ek~ 314 (353)
T 1kz7_A 299 REEVYIIQAPTPEIKA 314 (353)
T ss_dssp TTEEEEEECSSHHHHH
T ss_pred CCcEEEEECCCHHHHH
Confidence 4789999999999873
No 15
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=100.00 E-value=9.2e-39 Score=313.78 Aligned_cols=262 Identities=23% Similarity=0.356 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHhHhcC---CCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHH
Q psy11457 1 MLDIHSTFNNSMKLKRKES---PVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAE 77 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~---~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e 77 (315)
|+++|+.||..|+.+...+ ..+..||++|+++++ .| ++|..||+|++.|.+.+++++++++.|+.|+++++
T Consensus 78 i~~~h~~fl~~L~~~~~~~~~~~~~~~ig~~f~~~~~-----~~-~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~~~~~~~ 151 (510)
T 3jzy_A 78 LIMSNTKLLKALRVRKKTGGEKMPVQMIGDILAAELS-----HM-QAYIRFCSCQLNGAALLQQKTDEDTDFKEFLKKLA 151 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHhH-----HH-HHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 6889999999999987643 346899999999985 34 89999999999999999999999999999999999
Q ss_pred hCCcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11457 78 LNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLD 157 (315)
Q Consensus 78 ~~~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~ 157 (315)
.+|.|++++|.+||++|||||+||||||++|+|+|+++|+|+..|+.|++.+++++..||+.+++.|+..+|.+|+++++
T Consensus 152 ~~~~~~~l~L~~~L~~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~i~~v~~~in~~~~~~e~~~~l~~l~~~l~ 231 (510)
T 3jzy_A 152 SDPRCKGMPLSSFLLKPMQRITRYPLLIRSILENTPESHADHSSLKLALERAEELCSQVNEGVREKENSDRLEWIQAHVQ 231 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hCccccCCCHHHHhChhhhhhcCcHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecCCe-------eEEeCCCCCc
Q psy11457 158 RTPFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDS-------KSFDSPSNSC 230 (315)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~~k-------~~~k~~~~~~ 230 (315)
+.+... .++........++|+|+++|.+.+.. +..++++|||+|+||+|+.+.++ ..|....+
T Consensus 232 ~~g~~~---~l~~~~~~~~~~~r~li~eG~l~~~~-----~~~~~~~fLF~d~Ll~~k~~~~~~~~~g~~~~f~~~~~-- 301 (510)
T 3jzy_A 232 CEGLAE---QLIFNSLTNCLGPRKLLHSGKLYKTK-----SNKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSN-- 301 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCccc---cccccccccccccceeEEeceEEEcC-----CCcEEEEEcccceeEEeeecccccccCCcccccCcccc--
Confidence 533211 11100001124579999999998542 24599999999999999854432 11110000
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCccccccccCccccccccccc--cCceEEEEEcCCCCCeeEEEEc
Q psy11457 231 EAVSSSGPPPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVIN--DRSALYLVNTSQHSAQIYDLVA 308 (315)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~--~~~~~~li~~~~~~~~~~~l~a 308 (315)
.. -......|+ |..+ .|++..+ +....|.|... ...|.+.|
T Consensus 302 -------~~---------------~~v~k~~i~-------l~~~-----~v~~~~d~~~~~~~F~i~~~---~~~~~l~a 344 (510)
T 3jzy_A 302 -------AQ---------------FKMYKTPIF-------LNEV-----LVKLPTDPSSDEPVFHISHI---DRVYTLRT 344 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------cc---------------eeEEcCcee-------hhhe-----EEeccCCCCccccceeeecc---ceeEEecc
Confidence 00 000014578 8888 8888632 22334444432 34799999
Q ss_pred CCccccC
Q psy11457 309 SSASERK 315 (315)
Q Consensus 309 ~s~~erk 315 (315)
+|++||.
T Consensus 345 ~s~~ek~ 351 (510)
T 3jzy_A 345 DNINERT 351 (510)
T ss_dssp -------
T ss_pred CCHHHHH
Confidence 9999974
No 16
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=277.07 Aligned_cols=228 Identities=18% Similarity=0.237 Sum_probs=182.3
Q ss_pred CHHHHHH-HHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhC
Q psy11457 1 MLDIHST-FNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELN 79 (315)
Q Consensus 1 ll~~H~~-fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~ 79 (315)
|+++|.. |+..|+++..++ ..||++|+++++ .| ++|..||+||+.|..+++++. +..|+.+.+
T Consensus 65 I~~~h~~~fl~~L~~~~~~~---~~ig~~fl~~~~-----~f-~~Y~~Y~~n~~~a~~~l~~~~--~~~f~~~~~----- 128 (354)
T 2rgn_B 65 IYEWHRDYFLQELQRCLKDP---DWLAQLFIKHER-----RL-HMYVVYCQNKPKSEHVVSEFG--DSYFEELRQ----- 128 (354)
T ss_dssp HHHHHHHTHHHHHHHHHSCG---GGHHHHHHHTTT-----TT-HHHHHHHHTSHHHHHHHTTTS--HHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHcCH---HHHHHHHHHhHH-----HH-HHHHHHHhCcHHHHHHHHHHH--HHHHHHHHH-----
Confidence 5789999 999999988764 689999999985 34 899999999999999998763 344555443
Q ss_pred CcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy11457 80 PLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRT 159 (315)
Q Consensus 80 ~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~ 159 (315)
+.|++++|.+||++|||||+||||||++|+|+|+++|+|+..|+.|++.+++++..||+.++. .+|.+.
T Consensus 129 ~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~in~~~~~-----------~~i~~~ 197 (354)
T 2rgn_B 129 QLGHRLQLNDLLIKPVQRIMKYQLLLKDFLKYYNRAGMDTADLEQAVEVMCFVPKRCNDMMTL-----------GRLRGF 197 (354)
T ss_dssp HHCCSSCHHHHTTHHHHHHTSHHHHHHHHHHHTSSSCSCHHHHHHHHHHHHHHHHHHHHHHHG-----------GGCBSC
T ss_pred hcCCCCCHHHHhhhHHHHHhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhCC
Confidence 457899999999999999999999999999999999999999999999999999999987642 344443
Q ss_pred CCCccCCcchhhhccccCCCceEEEEeeEEEEeec-C---CCcceEEEEEecCCcEEEEEecC--------CeeEEeCCC
Q psy11457 160 PFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIAT-T---RQKLIELYVLLLEDIIVLLQKQD--------DSKSFDSPS 227 (315)
Q Consensus 160 ~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~-~---~~k~~~~~~fLf~d~Ll~~~~~~--------~k~~~k~~~ 227 (315)
... +. ..++|+++|.+....+. | +.+..++++|||+|+||+|++++ .+|+++
T Consensus 198 ~~~------l~-------~~~~Ll~~g~~~v~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~y~~k--- 261 (354)
T 2rgn_B 198 EGK------LT-------AQGKLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSEALGGGVRGGTQPGYVYK--- 261 (354)
T ss_dssp CSC------ST-------TSCCEEEEEEEEEECC-------CCCCEEEEEEESSEEEEEEECC--------CCEEEE---
T ss_pred hhh------hh-------hhccccccceEEEEcCCcCccccCCCceEEEEEeCCcEEEEEeccCCCCCCCCCceEEc---
Confidence 211 00 23679999998755421 1 23567999999999999999754 268877
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCccccccccCcccccccccc-ccCceEEEEEcCCC-CCeeEE
Q psy11457 228 NSCEAVSSSGPPPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVI-NDRSALYLVNTSQH-SAQIYD 305 (315)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~-~~~~~~~li~~~~~-~~~~~~ 305 (315)
..|+ |..+ .|++.+ +++.+|.++...+. +.+.|.
T Consensus 262 --------------------------------~~i~-------l~~~-----~v~~~~~~~~~~F~i~~~~~~~~~~~~~ 297 (354)
T 2rgn_B 262 --------------------------------NSIK-------VSCL-----GLEGNLQGDPCRFALTSRGPEGGIQRYV 297 (354)
T ss_dssp --------------------------------EEEE-------GGGE-----EEEESGGGCTTEEEEEEECSSSCEEEEE
T ss_pred --------------------------------ceee-------ccce-----eeeeccCCCCceEEEEecCCCCCceEEE
Confidence 5688 8889 887754 67788888876543 468999
Q ss_pred EEcCCccccC
Q psy11457 306 LVASSASERK 315 (315)
Q Consensus 306 l~a~s~~erk 315 (315)
|.|+|++||.
T Consensus 298 l~a~s~~ek~ 307 (354)
T 2rgn_B 298 LQAADPAISQ 307 (354)
T ss_dssp EEESSHHHHH
T ss_pred EECCCHHHHH
Confidence 9999999873
No 17
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=100.00 E-value=8.1e-34 Score=262.43 Aligned_cols=225 Identities=19% Similarity=0.243 Sum_probs=174.2
Q ss_pred CHHHHHH-HHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhC
Q psy11457 1 MLDIHST-FNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELN 79 (315)
Q Consensus 1 ll~~H~~-fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~ 79 (315)
|+++|+. |+..|+++...+ ..||++|+++++. | ++|..||+||+.|...+.+.. + .|++.+...
T Consensus 64 i~~~h~~~fl~~L~~~~~~~---~~ig~~f~~~~~~-----~-~~Y~~Y~~n~~~a~~~l~~~~--~----~f~~~~~~~ 128 (311)
T 1nty_A 64 IYEFHNNIFLKELEKYEQLP---EDVGHCFVTWADK-----F-QMYVTYCKNKPDSTQLILEHA--G----SYFDEIQQR 128 (311)
T ss_dssp HHHHHHHTHHHHHHHTTTCG---GGTHHHHHHTTTT-----T-HHHHHHHHHHHHHHHHHHHHT--T----THHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHH-----h-HHHHHHHhCcHHHHHHHHHHH--H----HHHHHHHHh
Confidence 5789996 999999887543 7899999999863 4 999999999999999997652 2 455555554
Q ss_pred CcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy11457 80 PLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRT 159 (315)
Q Consensus 80 ~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~ 159 (315)
+. .+++|.+||++|||||+||||||++|+|+||++|+| ++.|++.+++++..+|+.++. ..+++.
T Consensus 129 ~~-~~l~L~~~Li~PvQRi~rY~LLL~~llk~t~~~h~~---l~~Al~~~~~v~~~~N~~~~~-----------~~l~~~ 193 (311)
T 1nty_A 129 HG-LANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGE---IKDGLEVMLSVPKRANDAMHL-----------SMLEGF 193 (311)
T ss_dssp HT-CSSCHHHHHTHHHHHHHHHHHHHHHHHHTSCTTCTT---HHHHHHHHHHHHHHHHHHHHH-----------TTEESC
T ss_pred cc-CCCCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCcHH---HHHHHHHHHHHHHHHHHHHHH-----------HHHhCC
Confidence 43 579999999999999999999999999999998875 889999999999999987652 234432
Q ss_pred CCCccCCcchhhhccccCCCceEEEEeeEEEEeecC-CCcceEEEEEecCCcEEEEEecC-----CeeEEeCCCCCcccc
Q psy11457 160 PFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATT-RQKLIELYVLLLEDIIVLLQKQD-----DSKSFDSPSNSCEAV 233 (315)
Q Consensus 160 ~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~-~~k~~~~~~fLf~d~Ll~~~~~~-----~k~~~k~~~~~~~~~ 233 (315)
+.. +. ..++|+++|.+.+..+.+ ..++.++++|||+|+||+|++++ .+|.++
T Consensus 194 ~~~------l~-------~~g~li~~~~~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~y~~k--------- 251 (311)
T 1nty_A 194 DEN------IE-------SQGELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYK--------- 251 (311)
T ss_dssp CSC------SG-------GGCCEEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTTCCEEEEEE---------
T ss_pred CCC------hH-------hcCCceeeeeEEEEcCcccccccceeEEEeccCeEEEEEeeccCCCCceeEEe---------
Confidence 211 11 126799999987654311 23468999999999999999742 478888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCccccccccCcccccccccc-ccCceEEEEEcC-CCCCeeEEEEcCCc
Q psy11457 234 SSSGPPPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVI-NDRSALYLVNTS-QHSAQIYDLVASSA 311 (315)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~-~~~~~~~li~~~-~~~~~~~~l~a~s~ 311 (315)
..|+ |..+ .|.+++ .++.+|.+++.. +.+.+.|.|.|+|+
T Consensus 252 --------------------------~~i~-------l~~~-----~v~e~~~~~~~~F~i~~~~~~~~~~~~~l~a~s~ 293 (311)
T 1nty_A 252 --------------------------SKLF-------TSEL-----GVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSI 293 (311)
T ss_dssp --------------------------EEEE-------GGGE-----EEECCCTTCTTEEEEEESSSCCTTTCEEEECSSH
T ss_pred --------------------------eeee-------ccce-----eeEEccCCCCceEEEEeCCCCCCCceEEEECCCH
Confidence 5688 8888 887755 556777777743 33466899999999
Q ss_pred cccC
Q psy11457 312 SERK 315 (315)
Q Consensus 312 ~erk 315 (315)
+||.
T Consensus 294 ~ek~ 297 (311)
T 1nty_A 294 ENKQ 297 (311)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9873
No 18
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=100.00 E-value=9.2e-35 Score=306.28 Aligned_cols=243 Identities=12% Similarity=0.134 Sum_probs=195.9
Q ss_pred CHHHHHHHHHHHHHhHhcCC---CCCChHHHHHHhcccchhHHHHHHHHHHHHhH--HHHHHHHHHHHhcChHHHHHHHH
Q psy11457 1 MLDIHSTFNNSMKLKRKESP---VVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQ--QIALESLRERRRKDSRLNAFLTE 75 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~~---~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~--~~a~~~l~~~~~~~~~f~~fl~~ 75 (315)
|+++|+.||..|+++...+. ....||++|+++++.. .+.+|..||+|| +.|...+++++ +++.|..|+++
T Consensus 252 I~~~h~~fL~~Le~~~~~~~~~~~~~~IgdiFl~~~~~~----~F~~Y~~Yc~ny~~~~a~~~l~~l~-~~~~f~~fl~~ 326 (1049)
T 3ksy_A 252 IHELSVKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEEL----AFDPYESYARDILRPGFHDRFLSQL-SKPGAALYLQS 326 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSSSSCCCHHHHHHHHHTT----TTSHHHHHHHHHHCTTHHHHHHTTS-SSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHHHh----hhhHHHHHHHhhccHHHHHHHHHHh-cChHHHHHHHH
Confidence 57899999999999988653 3589999999996421 227999999996 99999999996 88999999998
Q ss_pred -HHhCCcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHH--------------
Q psy11457 76 -AELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAV-------------- 140 (315)
Q Consensus 76 -~e~~~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~-------------- 140 (315)
++..+.|++++|.+||++|||||+||||||++|+|+||+ ++|+..|++|++.+++++..||+.+
T Consensus 327 ~~~~~~~~~~l~L~s~LikPvQRI~rY~LLL~~LlK~Tp~-~~D~~~L~~Al~~i~~v~~~VNe~~~~~~~k~r~~e~~~ 405 (1049)
T 3ksy_A 327 IGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSED-QEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSESAC 405 (1049)
T ss_dssp HCTTHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHTHHHHHHHHHHTTSTTHHHHHHHHC-
T ss_pred HHhhhhhhhcCChHHHHHHHHHHHhHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhhh
Confidence 566688999999999999999999999999999999985 5999999999999999999999733
Q ss_pred --------HHHHHHHHHHHHHhhcCCCCCCccCCcchhhhccccCCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEE
Q psy11457 141 --------KEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIV 212 (315)
Q Consensus 141 --------~~~e~~~~L~~i~~~l~~~~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll 212 (315)
++.++..++.+++.++++..... +..+.|+|+++|.+.+..+ ..++++|||+|+||
T Consensus 406 ~~~~n~~kr~~e~~~~l~~lq~~i~~~~~~~-----------l~~~~r~Li~eG~l~~~~~-----k~~r~~FLF~D~Ll 469 (1049)
T 3ksy_A 406 RFYSQQMKGKQLAIKKMNEIQKNIDGWEGKD-----------IGQCCNEFIMEGTLTRVGA-----KHERHIFLFDGLMI 469 (1049)
T ss_dssp ------------CCSHHHHHHHTSSSCCSSC-----------GGGTCSCCCCEEEEEETTC-----SSCEEEEEETTEEE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCccc-----------cccccceEEEeceEEEEcc-----CceEEEEeeCCeEE
Confidence 45677788999999999753221 1123599999999986432 36999999999999
Q ss_pred EEEecCC----------eeEEeCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCccccccccCccccccc
Q psy11457 213 LLQKQDD----------SKSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQ 282 (315)
Q Consensus 213 ~~~~~~~----------k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r 282 (315)
+|+++.. +|.++ ..|+ |..+ .|+
T Consensus 470 ~~K~~~~~~~~~g~~~~~y~~k-----------------------------------~~i~-------L~~l-----~V~ 502 (1049)
T 3ksy_A 470 CCKSNHGQPRLPGASNAEYRLK-----------------------------------EKFF-------MRKV-----QIN 502 (1049)
T ss_dssp EEECCTTCCCCTTSCCCSCCCC-----------------------------------CEEC-------CSSC-----CCC
T ss_pred EEEecCccCCCCCCCCCceEEE-----------------------------------EEEE-------cCce-----EEE
Confidence 9997643 34444 6788 8888 888
Q ss_pred cccccC---ceEEEEEcCCCCCeeEEEEcCCccccC
Q psy11457 283 EVINDR---SALYLVNTSQHSAQIYDLVASSASERK 315 (315)
Q Consensus 283 ~~~~~~---~~~~li~~~~~~~~~~~l~a~s~~erk 315 (315)
++.... .+|.+++.+ .+.|.|.|+|++||+
T Consensus 503 ~~~d~~~~~~~F~I~~~~---~~~~~L~A~S~eeK~ 535 (1049)
T 3ksy_A 503 DKDDTNEYKHAFEIILKD---ENSVIFSAKSAEEKN 535 (1049)
T ss_dssp CCCCSSSCCSEEEECCTT---SCCEEEECSSHHHHH
T ss_pred ECCCCccccceEEEEcCC---CCEEEEeCCCHHHHH
Confidence 876443 566665443 279999999999873
No 19
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=99.97 E-value=2.6e-33 Score=239.91 Aligned_cols=160 Identities=29% Similarity=0.431 Sum_probs=143.8
Q ss_pred hCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCcchhhhccccCCCceEEEEeeEEE
Q psy11457 111 YTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPLVNEYRNLDLTRHKLIYEGNLQL 190 (315)
Q Consensus 111 ~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~~l~~~~~~~~~~~~~~~~~~l~l~~R~Li~eG~l~~ 190 (315)
||+++++|+..|.+|++.+++++.+||+.++++|+.++|.+||++|+..++....+ ...|.+++|++|+|+|+|.|+|
T Consensus 2 ~T~~~~~e~~~L~~Al~~ik~i~~~VNe~vre~E~~~rL~eiq~~l~~~~~~~~~~--~~~f~~~dL~~R~Ll~eG~L~~ 79 (185)
T 2lg1_A 2 MTKDNEVEQEDLAQSLSLVKDVIGAVDSKVASYEKKVRLNEIYTKTDSKSIMRMKS--GQMFAKEDLKRKKLVRDGSVFL 79 (185)
T ss_dssp CSSTTTSCCTTSCCSSSSSTTTSGGGGGGHHHHHHHHHHHHHHHSSCSSCCEECTT--SCEECHHHHTTSCEEEEEEEEE
T ss_pred CCCCCcHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccccccccc--cccccccccCCCceeeeceEEE
Confidence 79999999999999999999999999999999999999999999999877655433 2357888899999999999999
Q ss_pred EeecCCCcceEEEEEecCCcEEEEEecCCeeEEeCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccc
Q psy11457 191 RIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDI 270 (315)
Q Consensus 191 ~~~~~~~k~~~~~~fLf~d~Ll~~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~~~~~~~ 270 (315)
+.+ +++.+++|+|||+|+||+|++++++|.|+++. .++|+|+
T Consensus 80 k~~--~~~~~d~~~fLf~D~Ll~~~~~~~ky~~~~~~-----------------------------~~~pvi~------- 121 (185)
T 2lg1_A 80 KNA--AGRLKEVQAVLLTDILVFLQEKDQKYIFASLD-----------------------------QKSTVIS------- 121 (185)
T ss_dssp ECT--TCCEEEEEEEEESSEEECCEEETTEEECCCCS-----------------------------SSCSEEE-------
T ss_pred ecc--CCCeeeEEEEeecCEEEEEEecCCEEEEEccc-----------------------------CCCCeEe-------
Confidence 876 44678999999999999999999999998421 1359999
Q ss_pred ccccCccccccccccccCceEEEEEcCCCCCeeEEEEcCCccccC
Q psy11457 271 LRSLSPREKKRQEVINDRSALYLVNTSQHSAQIYDLVASSASERK 315 (315)
Q Consensus 271 l~~l~~~~~~~r~~~~~~~~~~li~~~~~~~~~~~l~a~s~~erk 315 (315)
|+++ +||++|+|+++||+|+++..||+||+|+|+|++||+
T Consensus 122 L~~~-----~vre~a~d~~~~fli~~~~~g~~~yel~a~s~~er~ 161 (185)
T 2lg1_A 122 LKKL-----IVREVAHEEKGLFLISMGMTDPEMVEVHASSKEERN 161 (185)
T ss_dssp SSSC-----EEECCSSCSSEEEEECCSSSCCCCEEEECSSHHHHH
T ss_pred ecce-----EEeccCCCCCeEEEEEecCCCCeEEEEEcCCHHHHH
Confidence 9999 999999999999999999889999999999999984
No 20
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A
Probab=99.97 E-value=2.5e-30 Score=235.55 Aligned_cols=148 Identities=24% Similarity=0.466 Sum_probs=135.4
Q ss_pred CHHHHHHHHHHHHHhHhc---CCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHH
Q psy11457 1 MLDIHSTFNNSMKLKRKE---SPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAE 77 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~---~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e 77 (315)
|+++|..|+..|+.+... +..+..||++|+.+++. | ++|..||+|++.|...+.+++++++.|+.|+++++
T Consensus 133 i~~~~~~fl~~L~~~~~~~~~~~~~~~ig~~f~~~~~~-----~-~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~~l~~~~ 206 (283)
T 3jv3_A 133 LIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLPH-----M-QPYIRFCSCQLNGAALIQQKTDEAPDFKEFVKRLA 206 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCCCCCHHHHHHHGGG-----G-THHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccccCCchhHHHHHHHHHHhh-----c-hhHHHHHcCHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 578999999999988763 44578999999999863 3 79999999999999999999999999999999999
Q ss_pred hCCcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11457 78 LNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQK 154 (315)
Q Consensus 78 ~~~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~~~~L~~i~~ 154 (315)
.+|.|++++|.+||++|||||+||||||++|+|+||++|+|+..|..|++.+++++..||+.+++.|+..+|.+||.
T Consensus 207 ~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~i~~v~~~iNe~~r~~e~~~~l~~iQs 283 (283)
T 3jv3_A 207 MDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSDRLEWIQA 283 (283)
T ss_dssp TSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHHTTSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC-----
T ss_pred hCccccCCCHHHHhhhhHHHhcchHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999884
No 21
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1
Probab=99.96 E-value=3.6e-29 Score=218.55 Aligned_cols=136 Identities=18% Similarity=0.291 Sum_probs=125.6
Q ss_pred CHHHHHHHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCC
Q psy11457 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNP 80 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~ 80 (315)
|+++|..|+..|+++...|+....||++|+++++ .|..+|..||+||+.|.+.++++ ++.|+.|++.++. +
T Consensus 64 i~~~h~~fl~~L~~~~~~~~~~~~ig~~f~~~~~-----~f~~~Y~~Y~~n~~~a~~~l~~~---~~~f~~fl~~~~~-~ 134 (209)
T 1by1_A 64 ICSFQQMLVQSLEECTKLPEAQQRVGGCFLNLMP-----QMKTLYLTYCANHPSAVNVLTEH---SEELGEFMETKGA-S 134 (209)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH---TTTHHHHTTTTCC-C
T ss_pred HHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHh---CHHHHHHHHHhcC-C
Confidence 5789999999999999999888999999999974 46569999999999999999887 6899999998754 6
Q ss_pred cccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11457 81 LCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAED 145 (315)
Q Consensus 81 ~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik~i~~~vn~~~~~~e~ 145 (315)
.+++++|.+||++|||||+||||||++|+|+||++|+|+..|..|++.+++++..||+.++..|+
T Consensus 135 ~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~t~~~h~d~~~l~~Al~~i~~v~~~iNe~~r~~e~ 199 (209)
T 1by1_A 135 SPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQEVRKRKEL 199 (209)
T ss_dssp SSTTTHHHHHTTSTTTGGGTHHHHHHHHHHSSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCcCCHHHHhhHHHHHHhHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999887664
No 22
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=98.93 E-value=3.1e-09 Score=83.09 Aligned_cols=88 Identities=16% Similarity=0.179 Sum_probs=62.1
Q ss_pred CCCceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecC---CeeEEeCCCCCccccCCCCCCCCCCCCCCCCCCCC
Q psy11457 177 LTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQD---DSKSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDT 253 (315)
Q Consensus 177 l~~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~---~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 253 (315)
.++|.|++||.++............+|+|||||+||++.++. ++|.|.
T Consensus 3 ~pgR~lv~eG~l~el~~~~~k~~~~v~~FLfND~Ll~a~~~~~~~~~~~~~----------------------------- 53 (113)
T 1zc3_B 3 TPGQYLVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYN----------------------------- 53 (113)
T ss_dssp --CCCEEEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEECCTTSCEEEE-----------------------------
T ss_pred CCCeEEEEeCcEEEEccccCCCCccEEEEecCCEEEEEEEeccCcccEEEE-----------------------------
Confidence 457999999999876642223345789999999999999843 447777
Q ss_pred CCCCCCCCccCCCccccccccCccccccccccc---cCceEEEEEcCCCCCeeEEEEcCCccccC
Q psy11457 254 EAEPDPPDWTKSVPEDILRSLSPREKKRQEVIN---DRSALYLVNTSQHSAQIYDLVASSASERK 315 (315)
Q Consensus 254 ~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~---~~~~~~li~~~~~~~~~~~l~a~s~~erk 315 (315)
..++ |..+ .|.++.+ -+++|.+... +.-+.+.|.|++||+
T Consensus 54 ------~~~~-------L~~~-----~v~d~~d~~~~~n~f~i~~~----~~s~~~~aes~~eK~ 96 (113)
T 1zc3_B 54 ------ALYP-------LDRL-----AVVNVKDNPPMKDMFKLLMF----PESRIFQAENAKIKR 96 (113)
T ss_dssp ------EEEE-------TTTC-----EEEEECCBTTBSSEEEEEET----TEEEEEECSSHHHHH
T ss_pred ------EEEE-------cccC-----EEEECCCCcccceEEEEEeC----CceEEEEcCCHHHHH
Confidence 3466 7777 6665542 3567776643 557899999998873
No 23
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=98.73 E-value=2.5e-08 Score=80.07 Aligned_cols=94 Identities=18% Similarity=0.250 Sum_probs=65.1
Q ss_pred ccCCCceEEEEeeEEEEeecC---CCcceEEEEEecCCcEEEEE----e-cCCeeEEeCCCCCccccCCCCCCCCCCCCC
Q psy11457 175 LDLTRHKLIYEGNLQLRIATT---RQKLIELYVLLLEDIIVLLQ----K-QDDSKSFDSPSNSCEAVSSSGPPPPSSSSR 246 (315)
Q Consensus 175 l~l~~R~Li~eG~l~~~~~~~---~~k~~~~~~fLf~d~Ll~~~----~-~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~ 246 (315)
+.+++|+|++.+.|.-..+-. +....++++|||||+||+|+ + .+++|.|+
T Consensus 6 L~~phRrlvc~~~l~ev~d~~K~~~kg~qqR~~FLFND~LL~TK~~~kkk~~~~Y~vr---------------------- 63 (140)
T 3qwm_A 6 LSLPHRRLVCYCRLFEVPDPNKPQKLGLHQREIFLFNDLLVVTKIFQKKKNSVTYSFR---------------------- 63 (140)
T ss_dssp ----CCCEEEEEEEEECSCTTSCCCTTTTEEEEEEESSCEEEEECCC---CCCCCCCE----------------------
T ss_pred eccCCceEEEEEeeeeeccCcccccccccceEEEEecchhhheeecccCCCCCceEEE----------------------
Confidence 456789999999997664311 22257999999999999996 2 35788888
Q ss_pred CCCCCCCCCCCCCCCccCCCccccccccCccccccccccc--cCceEEEEEcCCC--CCeeEEEEcCCccccC
Q psy11457 247 VPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVIN--DRSALYLVNTSQH--SAQIYDLVASSASERK 315 (315)
Q Consensus 247 ~~~~~d~~~~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~--~~~~~~li~~~~~--~~~~~~l~a~s~~erk 315 (315)
..++ |..| .|+...+ -+.+|-|.+..+. ..+..++.|+|.+||+
T Consensus 64 -------------~~~~-------L~gm-----~V~~~e~e~~p~~~~l~s~~~G~~~k~~i~~~A~s~~ER~ 111 (140)
T 3qwm_A 64 -------------QSFS-------LYGM-----QVLLFENQYYPNGIRLTSSVPGADIKVLINFNAPNPQDRK 111 (140)
T ss_dssp -------------EEEC-------CTTE-----EEEEECCSSCTTEEEEEECCTTSCCEEEEEEECSSHHHHH
T ss_pred -------------EEee-------ecce-----EEEcccCCCCceEEEEEecCCCCcceEEEEEECCCHHHHH
Confidence 3566 7777 6666443 3467777776543 2467999999999973
No 24
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
Probab=98.52 E-value=2.6e-08 Score=78.31 Aligned_cols=84 Identities=13% Similarity=0.102 Sum_probs=65.5
Q ss_pred ceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEec----CCeeEEeCCCCCccccCCCCCCCCCCCCCCCCCCCCCC
Q psy11457 180 HKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQ----DDSKSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEA 255 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~----~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 255 (315)
.+|+.+|.+....+ ..+..++|+|||+++||+|+++ .+.|+||
T Consensus 8 G~Ll~q~~f~V~~~--~~k~~eR~vFLFe~~ilf~K~~~~~~~~~Y~~K------------------------------- 54 (119)
T 1fho_A 8 GRIIRHDAFQVWEG--DEPPKLRYVFLFRNKIMFTEQDASTSPPSYTHY------------------------------- 54 (119)
T ss_dssp CCSSEEEEEEECST--TCSCEEEEEEEETTEEEEEEECCSSSSCCCSSC-------------------------------
T ss_pred CCccccCceEEEeC--CCCcceEEEEEecCcEEEEEEecCCCCCcEEEe-------------------------------
Confidence 45888999887664 3578899999999999999987 4667777
Q ss_pred CCCCCCccCCCccccccccCccccccccccc--cCceEEEEEcCCCCCeeEEE--EcCCcc-cc
Q psy11457 256 EPDPPDWTKSVPEDILRSLSPREKKRQEVIN--DRSALYLVNTSQHSAQIYDL--VASSAS-ER 314 (315)
Q Consensus 256 ~~~~~~i~~~~~~~~l~~l~~~~~~~r~~~~--~~~~~~li~~~~~~~~~~~l--~a~s~~-er 314 (315)
..|. +..+ -+.+... |...|-+.+.. +++.|.+ .|+|.+ .|
T Consensus 55 ----~~ik-------l~~~-----~lte~~~~~d~~kFeiw~~~--~~~~~il~~qA~s~e~~K 100 (119)
T 1fho_A 55 ----SSIR-------LDKY-----NIRQHTTDEDTIVLQPQEPG--LPSFRIKPKDFETSEYVR 100 (119)
T ss_dssp ----CEEE-------SSSC-----EEEEECTTCCEEEEECCSTT--CCCBCCCCCSSSSCSHHH
T ss_pred ----eEEe-------ecee-----EEEecCCCCCCcEEEEccCC--CCceEEEeeecCCcHHHH
Confidence 5688 8888 8888664 55667666554 5788999 999988 54
No 25
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.69 E-value=8.2e-05 Score=59.25 Aligned_cols=84 Identities=8% Similarity=0.224 Sum_probs=57.9
Q ss_pred eEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEecC--CeeEEeCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy11457 181 KLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQD--DSKSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEAEPD 258 (315)
Q Consensus 181 ~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~--~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 258 (315)
..++-|.+..... +.....+|++|||+|+|++|++.. +.|.++
T Consensus 27 ~ii~~s~v~~~~~-~~~~~~eR~l~LF~~~Ll~~s~~~~~~~f~~k---------------------------------- 71 (132)
T 1v61_A 27 NVIFMSQVVMQHG-ACEEKEERYFLLFSSVLIMLSASPRMSGFMYQ---------------------------------- 71 (132)
T ss_dssp CCSCEEEEEBCCS-SSSCCCEEEEEECSSCEEEEECSSSSSCCEEE----------------------------------
T ss_pred CeEEEeeEEEEEc-ccCcceEEEEEEcCCeEEEEEecCCCceEEEE----------------------------------
Confidence 4566677765543 123357999999999999999743 578887
Q ss_pred CCCccCCCccccccccCccccccccccc--cCceEEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 259 PPDWTKSVPEDILRSLSPREKKRQEVIN--DRSALYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 259 ~~~i~~~~~~~~l~~l~~~~~~~r~~~~--~~~~~~li~~~~~~~~~~~l~a~s~~er 314 (315)
.-++ |..+ .|++..+ +.+--|.|.+. ..+-+.+.|+|++|+
T Consensus 72 -gklP-------L~g~-----~V~~~ed~~~~~~aFeI~g~--~~~~i~v~~~s~eE~ 114 (132)
T 1v61_A 72 -GKIP-------IAGM-----VVNRLDEIEGSDCMFEITGS--TVERIVVHCNNNQDF 114 (132)
T ss_dssp -EEEC-------TTTC-----BCSTTCSSSSSCCCEEEECS--SSCEEEECCCCSHHH
T ss_pred -EEEe-------ccee-----EEEeccccccCccEEEEecC--CCceEEEEeCCHHHH
Confidence 5688 8888 7777532 12334444443 246699999999986
No 26
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=93.72 E-value=0.16 Score=39.48 Aligned_cols=85 Identities=16% Similarity=0.243 Sum_probs=54.5
Q ss_pred EEEEeeEEEEeec-CCCcceEEEEEecCCcEEEEEecCCeeEEeCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy11457 182 LIYEGNLQLRIAT-TRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEAEPDPP 260 (315)
Q Consensus 182 Li~eG~l~~~~~~-~~~k~~~~~~fLf~d~Ll~~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 260 (315)
.+++|.|.+..++ .+...+++.++|=.++|.+-+-..++= ...
T Consensus 12 VirkGWL~k~~~g~~k~~wk~rWFVLt~~~L~yyKd~~eke------------------------------------~~G 55 (125)
T 1dyn_A 12 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKE------------------------------------KKY 55 (125)
T ss_dssp EEEEEEEEESCCCGGGTSSEEEEEEEESSEEEEESSTTCSC------------------------------------EEE
T ss_pred eEEEEEEEEecCccccCCceeeEEEEeccceeeecCCcccc------------------------------------cce
Confidence 6899999864321 122256788888777777665322211 114
Q ss_pred CccCCCccccccccCccccccccccc----cCceEEEEEcCCC----CCeeEEEEcCCcccc
Q psy11457 261 DWTKSVPEDILRSLSPREKKRQEVIN----DRSALYLVNTSQH----SAQIYDLVASSASER 314 (315)
Q Consensus 261 ~i~~~~~~~~l~~l~~~~~~~r~~~~----~~~~~~li~~~~~----~~~~~~l~a~s~~er 314 (315)
+|+ |.++ .||++.. .+..|-|++++.. ....|+|.|.|.+|+
T Consensus 56 ~Ip-------L~~~-----~vr~v~~~~~~rk~~F~l~~~d~r~v~~~h~~y~LsA~t~ee~ 105 (125)
T 1dyn_A 56 MLS-------VDNL-----KLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEV 105 (125)
T ss_dssp EEE-------CTTE-----EEEECCSCSSSSCEEEEEEETTSSCSSTTCSSEEEEESSHHHH
T ss_pred EEE-------CCCc-----eEeccCCCCCCCceEEEEECCCCccccccceEEEEeCCCHHHH
Confidence 677 8888 8888663 2356667765421 246899999999875
No 27
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=93.60 E-value=0.2 Score=36.75 Aligned_cols=80 Identities=19% Similarity=0.160 Sum_probs=49.3
Q ss_pred EeeEEEEeecCCCcceEEEEEecCCcEEEEEecCCeeEEeCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccC
Q psy11457 185 EGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEAEPDPPDWTK 264 (315)
Q Consensus 185 eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~~ 264 (315)
+|.|..+.. .....+.++++|-++.|.+-+..++.- ..| ...|.
T Consensus 2 eG~L~K~g~-~~k~Wk~R~fvL~~~~L~Yy~~~~~~~--~~~--------------------------------~g~i~- 45 (103)
T 3rcp_A 2 EGVLYKWTN-YLTGWQPRWFVLDNGILSYYDSQDDVC--KGS--------------------------------KGSIK- 45 (103)
T ss_dssp EEEEEEECC-TTTCEEEEEEEEETTEEEEESSCC-----CCC--------------------------------SCEEE-
T ss_pred ceEEEEccC-CCCCeeceEEEEECCEEEEEecCCccc--CCc--------------------------------ccEEE-
Confidence 677775543 123367888888776666554332210 000 15778
Q ss_pred CCccccccccCccccccccccccCceEEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 265 SVPEDILRSLSPREKKRQEVINDRSALYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 265 ~~~~~~l~~l~~~~~~~r~~~~~~~~~~li~~~~~~~~~~~l~a~s~~er 314 (315)
|... .+...+.++..|-++.. +...|.|.|.|.+|+
T Consensus 46 ------L~~~-----~v~~~~~~~~~F~i~~~---~~r~~~l~a~s~~e~ 81 (103)
T 3rcp_A 46 ------MAVC-----EIKVHSADNTRMELIIP---GEQHFYMKAVNAAER 81 (103)
T ss_dssp ------GGGC-----EEECCTTCSSEEEEEET---TTEEEEEECSSHHHH
T ss_pred ------eeee-----EEEEcCCCCceEEEEeC---CCCEEEEECCCHHHH
Confidence 7766 66555566677777653 356899999999886
No 28
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=92.66 E-value=0.25 Score=37.84 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=20.9
Q ss_pred ceEEEEeeEEEEeecCCCcceEEEEEecCC
Q psy11457 180 HKLIYEGNLQLRIATTRQKLIELYVLLLED 209 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d 209 (315)
+..+++|.|..+.. .....+.++++|..|
T Consensus 16 ~~~~~~G~L~K~g~-~~~~Wk~R~fvL~~d 44 (129)
T 1x1g_A 16 GTVVKQGYLAKQGH-KRKNWKVRRFVLRKD 44 (129)
T ss_dssp SEEEEEEEEEEECS-SSSSEEEEEEEEEES
T ss_pred CCEEEEEEEEEECC-CCCCeeeEEEEEeCC
Confidence 67899999986643 233467888888855
No 29
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=92.35 E-value=0.45 Score=35.04 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=23.8
Q ss_pred ceEEEEeeEEEEeecCCCcceEEEEEecCC--cEEEEE
Q psy11457 180 HKLIYEGNLQLRIATTRQKLIELYVLLLED--IIVLLQ 215 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d--~Ll~~~ 215 (315)
+..+++|.|..+.. .....+.++++|.++ .|.+-+
T Consensus 5 ~~~~~~G~L~K~g~-~~~~Wk~R~fvL~~~~~~L~yyk 41 (109)
T 2i5f_A 5 GVIIKQGCLLKQGH-RRKNWKVRKFILREDPAYLHYYD 41 (109)
T ss_dssp CCEEEEEEEEEECT-TTCCEEEEEEEEETTTTEEEEEC
T ss_pred CceeEEEEEEEcCC-CCCCceEEEEEEeCCCcEEEEEC
Confidence 45789999986543 233467889999887 555543
No 30
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.65 E-value=0.38 Score=36.02 Aligned_cols=36 Identities=8% Similarity=0.152 Sum_probs=24.7
Q ss_pred ceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEE
Q psy11457 180 HKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQ 215 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~ 215 (315)
...+++|.|..+...+....+.++++|-++.|.+-+
T Consensus 9 ~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~ 44 (117)
T 2d9y_A 9 APVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYK 44 (117)
T ss_dssp CCCCEEEEEEEECTTSSSCEEEEEEEEETTEEEEES
T ss_pred CCeeEEEEEEEeCCCCCCCceEEEEEECCCEEEEEC
Confidence 456889999866533344567888888777666554
No 31
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.34 E-value=0.96 Score=33.99 Aligned_cols=37 Identities=8% Similarity=0.151 Sum_probs=25.1
Q ss_pred CceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEE
Q psy11457 179 RHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQ 215 (315)
Q Consensus 179 ~R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~ 215 (315)
+...+++|.|..+.+......+.++++|-++.|.+-+
T Consensus 19 ~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~ 55 (122)
T 2yry_A 19 NAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYK 55 (122)
T ss_dssp TCCEEEEEEEEEECCSSSCCEEEEEEEEETTEEEEES
T ss_pred CCCccEEEEEEEECCCCCCCcEEEEEEEeCCEEEEEC
Confidence 3568999999866532344467888888766665543
No 32
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=90.19 E-value=0.71 Score=35.23 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=23.5
Q ss_pred ceEEEEeeEEEEeecCCCcceEEEEEecCC--cEEEE
Q psy11457 180 HKLIYEGNLQLRIATTRQKLIELYVLLLED--IIVLL 214 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d--~Ll~~ 214 (315)
...+++|.|..+.. .....+.++++|.++ +|.+-
T Consensus 16 ~~~~~~G~L~K~g~-~~~~Wk~R~fvL~~~~~~L~yy 51 (129)
T 1x05_A 16 GVIIKQGCLLKQGH-RRKNWKVRKFILREDPAYLHYY 51 (129)
T ss_dssp SEEEEEEEEEECCS-SCCCCEEEEEEEEETTTEEEEE
T ss_pred CCceEEEEEEecCC-CCCCCeeEEEEEeCCCCEEEEE
Confidence 56899999986543 233467889999876 45444
No 33
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=90.15 E-value=0.98 Score=33.99 Aligned_cols=36 Identities=8% Similarity=0.053 Sum_probs=24.4
Q ss_pred ceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEE
Q psy11457 180 HKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQ 215 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~ 215 (315)
...+++|.|..+.+.+....+.++++|-++.|.+-+
T Consensus 9 ~~~~~~G~L~K~~~~~~~~WkkR~fvL~~~~L~yy~ 44 (123)
T 1upq_A 9 LPVHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYK 44 (123)
T ss_dssp SCEEEEEEEEEECSSSSCCEEEEEEEEETTEEEEES
T ss_pred CCceEEEEEEeeCCCCCCCceeEEEEEeCCEEEEEC
Confidence 557899999876532334467888888766665543
No 34
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=90.03 E-value=0.91 Score=33.74 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=25.2
Q ss_pred ceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEe
Q psy11457 180 HKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQK 216 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~ 216 (315)
...+++|.|..+.. .....+.++++|.++.|.+-+.
T Consensus 6 ~~~~~~G~L~K~g~-~~~~Wk~R~fvL~~~~L~yy~~ 41 (118)
T 1v89_A 6 SGPIKMGWLKKQRS-IVKNWQQRYFVLRAQQLYYYKD 41 (118)
T ss_dssp SCEEEEEEEEEECS-SSSCEEEEEEEEETTEEEEESS
T ss_pred CCCcEEEEEEecCC-CCCCccEEEEEEECCEEEEEeC
Confidence 34689999986643 2334678999998887766543
No 35
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=89.99 E-value=0.77 Score=32.96 Aligned_cols=31 Identities=13% Similarity=0.091 Sum_probs=20.3
Q ss_pred ccccccccCceEEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 280 KRQEVINDRSALYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 280 ~~r~~~~~~~~~~li~~~~~~~~~~~l~a~s~~er 314 (315)
.+...+.++..|-++ +. -..|.|.|.|++|+
T Consensus 52 ~~~~~~~~~~~F~i~-~~---~r~~~l~A~s~~e~ 82 (94)
T 2rsg_A 52 VITPHDFDECRFDIS-VN---DSVWYLRAQDPDHR 82 (94)
T ss_dssp EEEECSSCSSEEEEE-ET---TEEEEEECCSSCCT
T ss_pred eeecCcccceeEEEE-eC---CeEEEEECCCHHHH
Confidence 444444455555544 42 35899999999987
No 36
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=89.92 E-value=0.83 Score=36.99 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=23.5
Q ss_pred eEEEEeeEEEEeecCCC-----cceEEEEEecCCcEEEEE
Q psy11457 181 KLIYEGNLQLRIATTRQ-----KLIELYVLLLEDIIVLLQ 215 (315)
Q Consensus 181 ~Li~eG~l~~~~~~~~~-----k~~~~~~fLf~d~Ll~~~ 215 (315)
..|.||.|.++.. ++. ..+.++++|-++.|.+-+
T Consensus 14 ~~i~EG~L~Kr~~-~kk~~~~knWKkRwFVL~~~~L~Yyk 52 (164)
T 2lul_A 14 NTILEEILIKRSQ-QKKKTSPLNYKERLFVLTKSMLTYYE 52 (164)
T ss_dssp SEEEEEEEEEECC-CCSSSCCCCEEEEEEEEESSEEEEEC
T ss_pred CeeEEEEEEEecC-CCCCCCCCCceeEEEEEECCEEEEEe
Confidence 3689999976543 222 257889999888776654
No 37
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=89.75 E-value=1.3 Score=33.83 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=23.8
Q ss_pred EEEEeeEEEEee-cCCCcceEEEEEecCCcEEEEEe
Q psy11457 182 LIYEGNLQLRIA-TTRQKLIELYVLLLEDIIVLLQK 216 (315)
Q Consensus 182 Li~eG~l~~~~~-~~~~k~~~~~~fLf~d~Ll~~~~ 216 (315)
-+++|.|..+.+ ......+.++++|-+|-+++-.+
T Consensus 4 ~~k~G~L~K~~g~~~~k~WkkRwFvL~~~~~l~Y~~ 39 (128)
T 2rlo_A 4 PIKQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHP 39 (128)
T ss_dssp EEEEEEEEEECSCSTTCCEEEEEEEEETTTEEEEES
T ss_pred ceeEEEEEEecCCCccCCccEEEEEEeCCCEEEEec
Confidence 478999987643 12344678888888776666554
No 38
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=89.73 E-value=0.99 Score=34.24 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=25.0
Q ss_pred ceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEe
Q psy11457 180 HKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQK 216 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~ 216 (315)
...+++|.|..+........+.++++|-++.|.+-+.
T Consensus 19 ~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~ 55 (128)
T 2dkp_A 19 APVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRD 55 (128)
T ss_dssp SCCCEEEEEEEECCSSSCCEEEEEEEEETTEEEEESS
T ss_pred CCcEEEEEEEEeCCCCCCCceeEEEEEeCCEEEEECC
Confidence 4578999997654323444678888887776666543
No 39
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=89.59 E-value=0.77 Score=34.85 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=21.5
Q ss_pred eEEEEeeEEEEeecCCCcceEEEEEecCC-cEEEEE
Q psy11457 181 KLIYEGNLQLRIATTRQKLIELYVLLLED-IIVLLQ 215 (315)
Q Consensus 181 ~Li~eG~l~~~~~~~~~k~~~~~~fLf~d-~Ll~~~ 215 (315)
..+++|.|..+.. .....+.++++|-.| .|.+-+
T Consensus 7 ~~~~~G~L~K~g~-~~k~WkkRwfvL~~~~~L~yy~ 41 (125)
T 1unq_A 7 AIVKEGWLHKRGE-YIKTWRPRYFLLKNDGTFIGYK 41 (125)
T ss_dssp CEEEEEEEEEECS-SSCCEEEEEEEEETTSEEEEES
T ss_pred CeeEEeeEEeccC-CccCccCcEEEEecCCEEEEEe
Confidence 3689999986543 233467888888756 444443
No 40
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.38 E-value=0.99 Score=33.48 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=26.0
Q ss_pred ceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEec
Q psy11457 180 HKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQ 217 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~ 217 (315)
...+++|.|..+.. .....+.++++|.++.|.+-+..
T Consensus 6 ~~~~~~G~L~K~~~-~~~~Wk~R~fvL~~~~L~yy~~~ 42 (115)
T 2dn6_A 6 SGVLKQGYMMKKGH-RRKNWTERWFVLKPNIISYYVSE 42 (115)
T ss_dssp CSCSEEEEEEEECT-TSSCEEEEEEEECSSCEEEESST
T ss_pred CCceEEEEEEecCC-CCCCcEEeEEEEECCEEEEeCCC
Confidence 34678999986543 23446789999998887776543
No 41
>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica}
Probab=88.78 E-value=3.2 Score=36.38 Aligned_cols=117 Identities=13% Similarity=0.227 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHhcC-----------hHH
Q psy11457 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRRKD-----------SRL 69 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~~~-----------~~f 69 (315)
|+..|++|...|.+.... +.+|.-+-.- -+|.-+|.-|..+.+...+.+-..--.+ |-.
T Consensus 237 liqhhqkfisslqeakad----ekvgeklnsg------lhflvlyryylrhvpkniaklcsigmtdeievgrelyplpvi 306 (518)
T 4gou_A 237 LIQHHQKFISSLQEAKAD----EKVGEKLNSG------LHFLVLYRYYLRHVPKNIAKLCSIGMTDEIEVGRELYPLPVI 306 (518)
T ss_dssp HHHHHHHHHHHHTSTTGG----GSHHHHHHHH------TGGGGGGHHHHTTTTHHHHHHHHHHTSCGGGTTTTTCSHHHH
T ss_pred HHHHHHHHHHHHHHhhhh----HHHHHhhccC------ceehHHHHHHHHhccHHHHHHccCCCcchhhccccccCcchH
Confidence 356789999888765554 5577765533 3566889989988888776654331121 334
Q ss_pred HHHHHHHHhCCcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHHHHHHH
Q psy11457 70 NAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRALDRSK 130 (315)
Q Consensus 70 ~~fl~~~e~~~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~Al~~ik 130 (315)
..|=++ +...+++++-..|..|.=|+.-|+--..+.+|-|..++.|-..++-....+.
T Consensus 307 eefdkq---qkmtkkmsvlqmlvypyfrvrtyqayvddfikitkkdsqevkelevvhsqla 364 (518)
T 4gou_A 307 EEFDKQ---QKMTKKMSVLQMLVYPYFRVRTYQAYVDDFIKITKKDSQEVKELEVVHSQLA 364 (518)
T ss_dssp HHHHHH---HHHHTSCCHHHHHHGGGGHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHhhhhheehhHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 444332 2344678899999999999999999999999999999988888777666653
No 42
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=88.13 E-value=1.3 Score=32.85 Aligned_cols=34 Identities=32% Similarity=0.349 Sum_probs=22.9
Q ss_pred EEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEe
Q psy11457 182 LIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQK 216 (315)
Q Consensus 182 Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~ 216 (315)
.+++|.|..+.. .....+.++++|-++.|.+-+.
T Consensus 5 ~~~~G~L~K~g~-~~~~Wk~R~fvL~~~~L~yy~~ 38 (113)
T 1pls_A 5 RIREGYLVKKGS-VFNTWKPMWVVLLEDGIEFYKK 38 (113)
T ss_dssp CSEEEEEEEESS-SSSCCEEEEEEEETTEEEEESS
T ss_pred CcEEEEEEEeCC-CCCCceEEEEEEECCEEEEEeC
Confidence 467899875532 2344678999998887666543
No 43
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=87.74 E-value=2.4 Score=39.48 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=25.6
Q ss_pred ccccCccccccccccccC--ceEEEEEcCCCCCeeEEEEcCCccccC
Q psy11457 271 LRSLSPREKKRQEVINDR--SALYLVNTSQHSAQIYDLVASSASERK 315 (315)
Q Consensus 271 l~~l~~~~~~~r~~~~~~--~~~~li~~~~~~~~~~~l~a~s~~erk 315 (315)
|... .|+...... .+|-|++.+ +...|.|+|.|.+|++
T Consensus 348 l~~~-----~v~~~~~~~r~~cF~i~~~~--~~~~~~l~A~s~~e~~ 387 (407)
T 4h8s_A 348 LDNC-----SVMAVDCEDRRYCFQITTPN--GKSGIILQAESRKENE 387 (407)
T ss_dssp SSCC-----EEEEECCTTCSSEEEEECTT--SSCCEEEECSSSHHHH
T ss_pred CCce-----EEEECCCCCCCceEEEEecC--CCceEEEEcCCHHHHH
Confidence 7666 677655333 356665543 5668999999999873
No 44
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=87.44 E-value=1.9 Score=35.02 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=25.4
Q ss_pred EEEEeeEEEEeecC----CCcceEEEEEecCCcEEEEEe
Q psy11457 182 LIYEGNLQLRIATT----RQKLIELYVLLLEDIIVLLQK 216 (315)
Q Consensus 182 Li~eG~l~~~~~~~----~~k~~~~~~fLf~d~Ll~~~~ 216 (315)
.+++|.|.++...+ +...+.++++|-++.|.+-+.
T Consensus 3 vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~ 41 (169)
T 1btk_A 3 VILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEY 41 (169)
T ss_dssp CCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEE
T ss_pred eEEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEec
Confidence 47899998654321 233678999999998888885
No 45
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.04 E-value=1.5 Score=32.81 Aligned_cols=33 Identities=12% Similarity=0.031 Sum_probs=21.5
Q ss_pred EEEEeeEEEEeecCCCcceEEEEEecCCcEEEE
Q psy11457 182 LIYEGNLQLRIATTRQKLIELYVLLLEDIIVLL 214 (315)
Q Consensus 182 Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~ 214 (315)
.+++|.|..+....+...+.++++|-++.|.+-
T Consensus 10 ~~~~G~L~K~~~~~~k~WkkR~fvL~~~~L~yy 42 (114)
T 2da0_A 10 SEKKGYLLKKSDGIRKVWQRRKCSVKNGILTIS 42 (114)
T ss_dssp SCEEEEEEEECSSSCCCEEEEEEEEETTEEEEC
T ss_pred ccEEEEEEEeCCCCCCCceeEEEEEeCCEEEEE
Confidence 478999986654222446788888866655553
No 46
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=86.32 E-value=1.4 Score=34.31 Aligned_cols=32 Identities=16% Similarity=0.375 Sum_probs=20.6
Q ss_pred EEEEeeEEEEeecCCCcceEEEEEecCCcEEEEE
Q psy11457 182 LIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQ 215 (315)
Q Consensus 182 Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~ 215 (315)
.+++|.|.++. .....+.++++|=+++|.+-+
T Consensus 8 v~k~GwL~K~g--~~k~WkrRWfVLk~~~L~yyk 39 (130)
T 1v88_A 8 IVMADWLKIRG--TLKSWTKLWCVLKPGVLLIYK 39 (130)
T ss_dssp CCEEEEEEECC--SSSSCEEEEEEEETTEEEEES
T ss_pred eEEEeEEEEeC--CCCCceEEEEEEECCEEEEEC
Confidence 57889987543 234467888777666655443
No 47
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=86.08 E-value=0.81 Score=35.10 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=23.1
Q ss_pred ceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEe
Q psy11457 180 HKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQK 216 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~ 216 (315)
+..+++|.|..+.. .....+.++++|-++.|.+-+.
T Consensus 10 ~~~~k~G~L~K~g~-~~k~Wk~RwfVL~~~~L~yyk~ 45 (124)
T 2w2x_D 10 DEHKQQGELYMWDS-IDQKWTRHFCAIADAKLSFSDD 45 (124)
T ss_dssp ---CCEEEEEEEET-TTTEEEEEEEEEETTEEEEEEE
T ss_pred hhcceeEEEEEECC-CCCCceEeEEEEECCEEEEEcc
Confidence 34578899986543 2333678888888888766654
No 48
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=86.07 E-value=2.5 Score=33.74 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=23.6
Q ss_pred EEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEe
Q psy11457 182 LIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQK 216 (315)
Q Consensus 182 Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~ 216 (315)
.+++|.|..+.+ +....+.++++|-.+.|.+-+.
T Consensus 18 v~keG~L~Kkg~-~~k~WkrRWFvLk~~~L~Yyk~ 51 (149)
T 1x1f_A 18 LYFEGFLLIKRS-GYREYEHYWTELRGTTLFFYTD 51 (149)
T ss_dssp EEEEEEEEEECT-TCCSCEEEEEEEETTEEEEESC
T ss_pred ccEEEEEEEeCC-CCCCceeEEEEEcCCEEEEEeC
Confidence 899999986543 3344678888887776666543
No 49
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=86.02 E-value=1.2 Score=33.15 Aligned_cols=38 Identities=11% Similarity=0.035 Sum_probs=25.9
Q ss_pred ceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEec
Q psy11457 180 HKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQ 217 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~ 217 (315)
...+++|.|.++...+....+.++++|-++.|.+-+..
T Consensus 6 ~~~~~~G~L~K~~~~~~~~WkkR~fvL~~~~L~yy~~~ 43 (115)
T 2cod_A 6 SGKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNE 43 (115)
T ss_dssp SCCCEEEEEEECCSSSSSCCEEEEEEECSSEEEEEESS
T ss_pred CCccEEEEEEEcCCCCCCCCceEEEEEECCEEEEEcCC
Confidence 34578999985543234457789999988877766543
No 50
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=85.87 E-value=1.9 Score=31.23 Aligned_cols=34 Identities=9% Similarity=0.196 Sum_probs=22.9
Q ss_pred EEEEeeEEEEeecC---CCcceEEEEEecCCcEEEEE
Q psy11457 182 LIYEGNLQLRIATT---RQKLIELYVLLLEDIIVLLQ 215 (315)
Q Consensus 182 Li~eG~l~~~~~~~---~~k~~~~~~fLf~d~Ll~~~ 215 (315)
.+++|.|..+...+ +...+.++++|-++.|.+-+
T Consensus 3 v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~yy~ 39 (108)
T 1u5d_A 3 VIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYA 39 (108)
T ss_dssp EEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEES
T ss_pred ccEEEEEEEcCCCCCccccCceeeEEEEeCCEEEEec
Confidence 57899998766421 13467888888777666554
No 51
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=85.07 E-value=2.3 Score=33.34 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=24.0
Q ss_pred ceEEEEeeEEEEeecC---CCcceEEEEEecCCcEEEEE
Q psy11457 180 HKLIYEGNLQLRIATT---RQKLIELYVLLLEDIIVLLQ 215 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~---~~k~~~~~~fLf~d~Ll~~~ 215 (315)
+..+++|.|.++...+ ....+.++++|-++.|.+-+
T Consensus 15 ~~~~~~G~L~K~g~~~~~~~k~WkkR~fvL~~~~L~yyk 53 (148)
T 1u5f_A 15 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYG 53 (148)
T ss_dssp SSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEES
T ss_pred CCccEEEEEEEeCCCCCCcCCCceeEEEEEECCEEEEEc
Confidence 4578999998765321 12467888888777666553
No 52
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=83.74 E-value=1.7 Score=32.76 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=21.5
Q ss_pred EEEEeeEEEEeecCCCcceEEEEEecCCcEEEEE
Q psy11457 182 LIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQ 215 (315)
Q Consensus 182 Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~ 215 (315)
-+++|.|..+.+ .....+.++++|-++.|.+-+
T Consensus 5 ~~~~G~L~K~g~-~~~~Wk~R~fvL~~~~L~yy~ 37 (127)
T 1fgy_A 5 PDREGWLLKLGG-RVKTWKRRWFILTDNCLYYFE 37 (127)
T ss_dssp CSEEEEEEEECS-SSCCEEEEEEEEETTEEEEES
T ss_pred CceEeEEEEECC-CCCCeEEEEEEEECCEEEEeC
Confidence 367899876543 233467888888777655544
No 53
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=83.31 E-value=1.8 Score=31.81 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=22.6
Q ss_pred EEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEec
Q psy11457 182 LIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQ 217 (315)
Q Consensus 182 Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~ 217 (315)
.+++|.|..+ . ....+.++++|-++.|.+-+.+
T Consensus 8 ~~~~G~L~K~-~--~k~Wk~RwfvL~~~~L~yyk~~ 40 (107)
T 2cof_A 8 LETSSYLNVL-V--NSQWKSRWCSVRDNHLHFYQDR 40 (107)
T ss_dssp CTTCCEEEEE-E--TTEEEEEEEEECSSCEEEECSS
T ss_pred CcEeEEEEEe-c--CCCcceEEEEEECCEEEEEeCC
Confidence 4567888765 2 4456788888888877665543
No 54
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=82.52 E-value=2.9 Score=31.20 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=18.1
Q ss_pred ccCceEEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 286 NDRSALYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 286 ~~~~~~~li~~~~~~~~~~~l~a~s~~er 314 (315)
..+.+|-|+.++ -..|.+.|.|.+|+
T Consensus 64 ~r~~~F~l~~~~---~~~y~f~A~s~ee~ 89 (112)
T 3cxb_B 64 DRPHAFQVILSD---RPCLELSAESEAEM 89 (112)
T ss_dssp SCTTEEEEEETT---SCCEEEECSSHHHH
T ss_pred CCCeEEEEEcCC---CCEEEEEcCCHHHH
Confidence 344677776553 23699999999875
No 55
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=81.75 E-value=3.1 Score=31.81 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=20.8
Q ss_pred EEEEeeEEEEeecCCCcceEEEEEecCCcEEEEE
Q psy11457 182 LIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQ 215 (315)
Q Consensus 182 Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~ 215 (315)
-+++|.|..+.. .......++++|-.+.|.+-+
T Consensus 6 ~~k~G~L~Kk~~-~~k~W~~rwfVL~~~~L~yyK 38 (120)
T 4a6h_A 6 EIKSGFLERRSK-FLKSYSKGYYVLTPNFLHEFK 38 (120)
T ss_dssp CSEEEEEEEEET-TTTEEEEEEEEECSSEEEEES
T ss_pred ccEEEEEEEcCC-CCCCCccEEEEEeCCEEEEEc
Confidence 367898886553 223367888888777544443
No 56
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=81.22 E-value=4.1 Score=30.63 Aligned_cols=36 Identities=11% Similarity=0.021 Sum_probs=24.3
Q ss_pred ceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEe
Q psy11457 180 HKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQK 216 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~ 216 (315)
+..+++|.|..+.+ .....+.++++|.++.|.+-+.
T Consensus 16 ~~~~~~G~L~K~g~-~~~~Wk~R~fvL~~~~L~yy~~ 51 (126)
T 1fao_A 16 SLGTKEGYLTKQGG-LVKTWKTRWFTLHRNELKYFKD 51 (126)
T ss_dssp CTTCEEEEEEEECS-SSCCEEEEEEEEETTEEEEESS
T ss_pred CCccEEEEEEEcCC-CCCCcccEEEEEECCEEEEeCC
Confidence 34578999986543 2344678999998887666543
No 57
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.99 E-value=2.1 Score=32.22 Aligned_cols=34 Identities=9% Similarity=-0.097 Sum_probs=20.1
Q ss_pred EEEEeeEEEEeecC-CCcceEEEEEecCC--cEEEEE
Q psy11457 182 LIYEGNLQLRIATT-RQKLIELYVLLLED--IIVLLQ 215 (315)
Q Consensus 182 Li~eG~l~~~~~~~-~~k~~~~~~fLf~d--~Ll~~~ 215 (315)
.+++|.|..+...+ ....+.++++|-++ .|.+-+
T Consensus 8 ~~~~G~L~K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~ 44 (119)
T 2dhk_A 8 KKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSR 44 (119)
T ss_dssp CCCEEEEEECSCSSSSCCCEEEEEEEETTTTEEEEES
T ss_pred CcEEEEEEecCCCCCCCCceeEEEEEECCccEEEEEC
Confidence 46789887654311 23356778777766 555443
No 58
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=79.87 E-value=1.3 Score=34.72 Aligned_cols=36 Identities=11% Similarity=0.065 Sum_probs=22.8
Q ss_pred ceEEEEeeEEEEeec-----CCCcceEEEEEecCC-----cEEEEE
Q psy11457 180 HKLIYEGNLQLRIAT-----TRQKLIELYVLLLED-----IIVLLQ 215 (315)
Q Consensus 180 R~Li~eG~l~~~~~~-----~~~k~~~~~~fLf~d-----~Ll~~~ 215 (315)
...+++|.|.++... .....+.++++|-.+ .|.+-+
T Consensus 16 ~~~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~ 61 (150)
T 1wg7_A 16 GGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYK 61 (150)
T ss_dssp CCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEES
T ss_pred CCeeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEEC
Confidence 456889999876531 123357888888775 555543
No 59
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=79.09 E-value=17 Score=33.26 Aligned_cols=83 Identities=13% Similarity=0.044 Sum_probs=46.2
Q ss_pred eEEEEeeEEEEeecC--CCcceEEEEEecCCcEEEEEecCCeeEEeCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy11457 181 KLIYEGNLQLRIATT--RQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEAEPD 258 (315)
Q Consensus 181 ~Li~eG~l~~~~~~~--~~k~~~~~~fLf~d~Ll~~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 258 (315)
..+++|.|.++...| +..++.++++|=++.|.+-+. ++. .|
T Consensus 277 ~~~k~G~L~K~~~~~~~~~~WkkRwfvL~~~~L~y~k~-~~~----~~-------------------------------- 319 (385)
T 2q13_A 277 LTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQAR-GDV----AG-------------------------------- 319 (385)
T ss_dssp CSCCEEEEEEC--------CCEEEEEEEETTEEEEECS-SCS----SC--------------------------------
T ss_pred CccEEEEEEEecCCCCCcCCceeEEEEEECCEEEEecC-CCc----CC--------------------------------
Confidence 346789998765432 123678888887776543322 110 00
Q ss_pred CCCccCCCccccccccCccccccccccc-cC-ceEEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 259 PPDWTKSVPEDILRSLSPREKKRQEVIN-DR-SALYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 259 ~~~i~~~~~~~~l~~l~~~~~~~r~~~~-~~-~~~~li~~~~~~~~~~~l~a~s~~er 314 (315)
...|. |... .|+.+.. ++ .+|-|+.. .++..|.|.|.|.+|+
T Consensus 320 ~~~i~-------l~~~-----~v~~~~~~~r~~~F~i~t~--~~~~~~~l~A~s~~e~ 363 (385)
T 2q13_A 320 GLAMD-------IDNC-----SVMAVDCEDRRYCFQITSF--DGKKSSILQAESKKDH 363 (385)
T ss_dssp EEEEE-------CTTC-----EEEEECCTTCSSEEEEECT--TSCBCCCEECSSHHHH
T ss_pred CceEE-------ccce-----EEEeccccCCCceEEEEeC--CCCeEEEEEeCCHHHH
Confidence 03466 6555 5555432 33 45555433 3567899999999986
No 60
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=77.92 E-value=3.1 Score=30.46 Aligned_cols=32 Identities=9% Similarity=0.204 Sum_probs=19.8
Q ss_pred EEEeeEEEEeecCCCcceEEEEEecCCcEEEEE
Q psy11457 183 IYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQ 215 (315)
Q Consensus 183 i~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~ 215 (315)
+++|.|..+. .+....+.++++|-+..|.+-+
T Consensus 9 ~~~G~L~K~~-~~~~~Wk~RwfvL~~~~L~yyk 40 (109)
T 1wgq_A 9 TMSGYLYRSK-GSKKPWKHLWFVIKNKVLYTYA 40 (109)
T ss_dssp SCEEEEEEES-STTSCCEEEEEEEETTEEEEES
T ss_pred eEEEEEEeCC-CCCCCceeEEEEEeCCEEEEEC
Confidence 5689888553 2234467788777765555543
No 61
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=77.92 E-value=6.3 Score=31.49 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=24.8
Q ss_pred EEEeeEEEEeecCCCcceEEEEEecCCcEEEEEe
Q psy11457 183 IYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQK 216 (315)
Q Consensus 183 i~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~ 216 (315)
+++|.|+.+.. -......++++|+.+-|.++..
T Consensus 2 ~k~G~L~~~~~-~~~~w~~~~fvL~~~~L~y~~e 34 (150)
T 2fjl_A 2 IKNGILYLEDP-VNHEWYPHYFVLTSSKIYYSEE 34 (150)
T ss_dssp CEEEEEEEEET-TTTEEEEEEEEEETTEEEECCC
T ss_pred CcceEEEeecC-CCCCceEeEEEEECCEEEEEee
Confidence 35788887764 2344788999999999999873
No 62
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.49 E-value=2.5 Score=31.71 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=22.0
Q ss_pred ccccCccccccccccccCceEEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 271 LRSLSPREKKRQEVINDRSALYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 271 l~~l~~~~~~~r~~~~~~~~~~li~~~~~~~~~~~l~a~s~~er 314 (315)
|... .|.....+..+|-|+ +. ....|.|.|.|.+|+
T Consensus 57 L~~~-----~v~~~~~~~~~F~i~-~~--~~r~~~l~a~s~~e~ 92 (120)
T 2d9x_A 57 LAGA-----VISPSDEDSHTFTVN-AA--SGEQYKLRATDAKER 92 (120)
T ss_dssp CTTC-----CEECCSSSSSCEEEC-CS--SSCCEEECCSSHHHH
T ss_pred cceE-----EEEecCCCCCEEEEE-cC--CCCEEEEECCCHHHH
Confidence 6666 444433444455444 32 135799999999886
No 63
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=76.20 E-value=14 Score=28.04 Aligned_cols=34 Identities=12% Similarity=0.048 Sum_probs=20.8
Q ss_pred ceEEEEeeEEEEeecCCCcceEEEEEecC-CcEEEE
Q psy11457 180 HKLIYEGNLQLRIATTRQKLIELYVLLLE-DIIVLL 214 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~~~k~~~~~~fLf~-d~Ll~~ 214 (315)
...+++|.|.++.. .....+.++++|.. ..|.+-
T Consensus 6 ~~v~~~G~L~K~g~-~~k~WkkRwFVL~~~~~L~Yy 40 (130)
T 2d9v_A 6 SGLVRGGWLWRQSS-ILRRWKRNWFALWLDGTLGYY 40 (130)
T ss_dssp CCEEEEEEEEEECS-SSCCEEEEEEEEETTTEEEEE
T ss_pred CceeEEEEEEeecC-ccCCceeeEEEEccCCEEEEE
Confidence 34789999986543 23345677777744 444443
No 64
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=74.60 E-value=4.6 Score=30.15 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=24.5
Q ss_pred ceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEe
Q psy11457 180 HKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQK 216 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~ 216 (315)
...+++|.|..+.. .....+.++++|-++.|.+-+.
T Consensus 12 ~~~~~~G~L~K~g~-~~~~Wk~R~fvL~~~~L~yy~~ 47 (125)
T 1eaz_A 12 SAVIKAGYCVKQGA-VMKNWKRRYFQLDENTIGYFKS 47 (125)
T ss_dssp CCCSEEEEEEEECT-TTCCEEEEEEEECSSEEEEESS
T ss_pred CCccEEEEEEEeCC-CCCCcceEEEEEeCCEEEEEcC
Confidence 45688999986532 2344678899998877666543
No 65
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=73.82 E-value=7.2 Score=28.48 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=15.9
Q ss_pred eEEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 290 ALYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 290 ~~~li~~~~~~~~~~~l~a~s~~er 314 (315)
+|-|+.++ ...|.|.|.|++|+
T Consensus 78 ~F~i~~~~---~r~~~l~a~s~~e~ 99 (112)
T 3aj4_A 78 MLQIVCRD---GKTISLCAESTDDC 99 (112)
T ss_dssp EEEEEETT---SCEEEEECSSHHHH
T ss_pred EEEEEecC---CcEEEEEeCCHHHH
Confidence 55555442 45799999999886
No 66
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=73.66 E-value=4.1 Score=30.95 Aligned_cols=34 Identities=12% Similarity=0.026 Sum_probs=21.3
Q ss_pred EEEEeeEEEEee-cCCCcceEEEEEecCCcEEEEE
Q psy11457 182 LIYEGNLQLRIA-TTRQKLIELYVLLLEDIIVLLQ 215 (315)
Q Consensus 182 Li~eG~l~~~~~-~~~~k~~~~~~fLf~d~Ll~~~ 215 (315)
.+++|.|..+.. .+....+.++++|-++.|.+-+
T Consensus 5 v~~~G~L~K~~~~~~~~~WkrRwfvL~~~~L~yyk 39 (134)
T 2y7b_A 5 VEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWT 39 (134)
T ss_dssp CCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEES
T ss_pred ceEEeeEEEEcCCCCCCCcEEEEEEEECCEEEEEC
Confidence 467899986632 2223356778888777665544
No 67
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=73.06 E-value=7.4 Score=32.68 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=24.1
Q ss_pred eEEEEeeEEEEeec---CCCcceEEEEEecCCcEEEEE
Q psy11457 181 KLIYEGNLQLRIAT---TRQKLIELYVLLLEDIIVLLQ 215 (315)
Q Consensus 181 ~Li~eG~l~~~~~~---~~~k~~~~~~fLf~d~Ll~~~ 215 (315)
..+++|.|.++... .....+.++++|-++.|.+-+
T Consensus 105 ~v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~~L~Yyk 142 (211)
T 1u5e_A 105 FVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYG 142 (211)
T ss_dssp SEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEES
T ss_pred CccEEEEEEEECCCCCcCCCCcEeEEEEEECCEEEEEc
Confidence 47899999876642 123467888888777666554
No 68
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=71.50 E-value=15 Score=28.24 Aligned_cols=42 Identities=10% Similarity=0.155 Sum_probs=26.8
Q ss_pred CCccCCCccccccccCcccccccccccc-CceEEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 260 PDWTKSVPEDILRSLSPREKKRQEVIND-RSALYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 260 ~~i~~~~~~~~l~~l~~~~~~~r~~~~~-~~~~~li~~~~~~~~~~~l~a~s~~er 314 (315)
.+|+ |... .|+..... +.-.|-|++...| ..|-+.|.|.+++
T Consensus 58 ~~i~-------L~g~-----~V~~~e~~~~~~~F~L~~~~~G-~~Y~fqA~s~~~~ 100 (126)
T 2dtc_A 58 KKVS-------IVGW-----MVQLPDDPEHPDIFQLNNPDKG-NVYKFQTGSRFHA 100 (126)
T ss_dssp EEEE-------CTTC-----EEECCCCTTSTTEEEEECTTSC-SEEEEECSSHHHH
T ss_pred ceEE-------eCCC-----EEEecCCCCCCCEEEEeeCCCC-CEEEEeCCCHHHH
Confidence 4788 8888 88743321 2334444444344 4599999998864
No 69
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=71.35 E-value=6.4 Score=33.44 Aligned_cols=36 Identities=11% Similarity=0.224 Sum_probs=21.5
Q ss_pred EEEEeeEEEEeec----CCCcceEEEEEecCCcEEEEEec
Q psy11457 182 LIYEGNLQLRIAT----TRQKLIELYVLLLEDIIVLLQKQ 217 (315)
Q Consensus 182 Li~eG~l~~~~~~----~~~k~~~~~~fLf~d~Ll~~~~~ 217 (315)
.+++|.|..+... ++...+.++++|-++.|.+-+..
T Consensus 58 ~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~ 97 (228)
T 3tfm_A 58 ALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFEND 97 (228)
T ss_dssp SSEEEEEEECGGGCSSSCGGGCEEEEEEECSSEEEEESST
T ss_pred cceEEEEEEECCCcCCcccCCceEEEEEEeCCEEEEEeCC
Confidence 3557777654331 01345788888888777665543
No 70
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=69.52 E-value=6.4 Score=30.14 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=16.2
Q ss_pred ceEEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 289 SALYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 289 ~~~~li~~~~~~~~~~~l~a~s~~er 314 (315)
.+| .|.+ +...|.|.|.|++|+
T Consensus 87 ~~F-~i~t---~~r~y~l~A~s~~e~ 108 (126)
T 1v5p_A 87 FCF-VINA---LSQRYFLQANDQKDL 108 (126)
T ss_dssp SEE-EEEC---SSCEEEEECSSHHHH
T ss_pred EEE-EEEC---CCEEEEEECCCHHHH
Confidence 455 6655 356899999999885
No 71
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=68.02 E-value=5.1 Score=31.04 Aligned_cols=33 Identities=9% Similarity=0.038 Sum_probs=20.5
Q ss_pred EEEEeeEEEEeecCCCcceEEEEEecCCcEEEE
Q psy11457 182 LIYEGNLQLRIATTRQKLIELYVLLLEDIIVLL 214 (315)
Q Consensus 182 Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~ 214 (315)
+.++|-|....+.+....+.|+++|=.++|.+-
T Consensus 8 ~~~~G~L~KqG~~~~K~WKrRwFVL~~~~LyYf 40 (126)
T 1wi1_A 8 MKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTF 40 (126)
T ss_dssp EEEEEEEEEECSSSCCSCEEEEEEEEEEETTEE
T ss_pred CceeEEEEEeCCCcccccceEEEEEeCCEEEEE
Confidence 689999986544333345666666665555443
No 72
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=66.68 E-value=8.5 Score=28.18 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=21.6
Q ss_pred EEEEeeEEEEeecCCCcceEEEEEec--CCcEEEEE
Q psy11457 182 LIYEGNLQLRIATTRQKLIELYVLLL--EDIIVLLQ 215 (315)
Q Consensus 182 Li~eG~l~~~~~~~~~k~~~~~~fLf--~d~Ll~~~ 215 (315)
.+++|.|..+.. .....+.++++|. ++.|.+-+
T Consensus 8 ~~~~G~L~K~g~-~~~~Wk~R~fvL~~~~~~L~yy~ 42 (117)
T 1v5u_A 8 RSYEGILYKKGA-FMKPWKARWFVLDKTKHQLRYYD 42 (117)
T ss_dssp SSEEEEEEECCC-SSSCCEEEEEEEETTTTEEEEES
T ss_pred ccEEEEEEecCC-CCCCceeeEEEEECCCCEEEEee
Confidence 467899876543 2344678888888 55666554
No 73
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=66.41 E-value=14 Score=29.20 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=14.7
Q ss_pred EEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 291 LYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 291 ~~li~~~~~~~~~~~l~a~s~~er 314 (315)
.|-|.+.. ..|.|.|.|.+|+
T Consensus 79 ~F~I~t~~---r~~~l~A~s~~e~ 99 (168)
T 2j59_M 79 VFRLTTSD---CECLFQAEDRDDM 99 (168)
T ss_dssp EEEEECSS---CEEEEECSSHHHH
T ss_pred EEEEEeCC---ceEEEEcCCHHHH
Confidence 44444432 4799999999886
No 74
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=62.31 E-value=9.3 Score=34.72 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=19.8
Q ss_pred EEEEeeEEEEeecCCCcceEEEEEecCCcEEEE
Q psy11457 182 LIYEGNLQLRIATTRQKLIELYVLLLEDIIVLL 214 (315)
Q Consensus 182 Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~ 214 (315)
.+++|.|.++.+ ....++.++++|-++.|.+-
T Consensus 213 ~~k~G~L~K~g~-~~k~WkkRwFVL~~~~L~Yy 244 (347)
T 2r09_A 213 PDREGWLLKLGG-RVKTWKRRWFILTDNCLYYF 244 (347)
T ss_dssp CCEEEEEEEECS-SSCCEEEEEEEEETTEEEEE
T ss_pred cccCCeeEecCC-CcccceeEEEEEcCCEEEEE
Confidence 378999975543 23346777777766654444
No 75
>2lwd_A Probable ATP-dependent RNA helicase DDX58; RIG-I, CARD, sensor, viral RNA, signaling protein; NMR {Homo sapiens} PDB: 2lwe_A
Probab=60.90 E-value=38 Score=24.91 Aligned_cols=77 Identities=12% Similarity=-0.023 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHhHhcCCCCCChHHHHHHhcccchhHHHHHHHHHHHHhHHHHHHHHHHHHh--cChHHHHHHHHHHhC
Q psy11457 2 LDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLRERRR--KDSRLNAFLTEAELN 79 (315)
Q Consensus 2 l~~H~~fl~~L~~~~~~~~~v~~Igdi~l~~~~~~~~~~~~~~Y~~Yc~~~~~a~~~l~~~~~--~~~~f~~fl~~~e~~ 79 (315)
++-|+.+|+.+.......-.+..|-+-+..+++...-+.. .....--.+...|..++..+.+ +..=|++|+..+++.
T Consensus 10 ~ee~r~lL~~~~p~l~~~I~p~~IL~~L~~~L~~~d~E~I-~a~~~~~G~~~aa~~LL~~L~r~~~~gWf~~fl~AL~~~ 88 (100)
T 2lwd_A 10 LEEYRLLLKRLQPEFKTRIIPTDIISDLSECLINQECEEI-LQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKE 88 (100)
T ss_dssp HHHHHHHHHHTHHHHHHHCCTTTTHHHHTTTSCHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHCCCTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHCCHHHHHHH-HHHHHccChHHHHHHHHHHHHhcCcCCcHHHHHHHHHHc
Confidence 3678899998888887765567777766667754333333 3334444567778888887766 445699999877753
No 76
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=59.75 E-value=12 Score=32.50 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=21.9
Q ss_pred ceEEEEeeEEEEe-----ecC------CCcceEEEEEecCCcEEEEE
Q psy11457 180 HKLIYEGNLQLRI-----ATT------RQKLIELYVLLLEDIIVLLQ 215 (315)
Q Consensus 180 R~Li~eG~l~~~~-----~~~------~~k~~~~~~fLf~d~Ll~~~ 215 (315)
...+++|.|..+. ..| ....+.++++|-++.|.+-+
T Consensus 9 ~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~~L~yyK 55 (263)
T 3a8p_A 9 GVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYE 55 (263)
T ss_dssp -CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETTEEEEES
T ss_pred CCeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcCCEEEEEe
Confidence 3478899987321 111 23467888888877666554
No 77
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=56.25 E-value=22 Score=25.29 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=15.0
Q ss_pred EEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 291 LYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 291 ~~li~~~~~~~~~~~l~a~s~~er 314 (315)
.|-|.+. .-..|.|.|.|.+|+
T Consensus 75 ~F~i~~~--~~~~~~~~A~s~~e~ 96 (106)
T 1btn_A 75 VFKLRLS--DGNEYLFQAKDDEEM 96 (106)
T ss_dssp EEEEECT--TSCEEEEECSSHHHH
T ss_pred EEEEEec--CCCEEEEECCCHHHH
Confidence 4444443 235799999999886
No 78
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=53.86 E-value=18 Score=27.50 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=23.7
Q ss_pred ceEEEEeeEEEEe--ecCC---CcceEEEEEecCCcEEEEEe
Q psy11457 180 HKLIYEGNLQLRI--ATTR---QKLIELYVLLLEDIIVLLQK 216 (315)
Q Consensus 180 R~Li~eG~l~~~~--~~~~---~k~~~~~~fLf~d~Ll~~~~ 216 (315)
....++|.|..+. ..|+ .....++++|=++.|.+-+.
T Consensus 10 ~~~~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~~~~L~yykd 51 (129)
T 2p0d_A 10 HEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYRE 51 (129)
T ss_dssp CSEEEEEEEEEEEEEETTEECCCCCEEEEEEEESSEEEEESC
T ss_pred cceeEEEEEEEeeeccCCCcCCCCceEEEEEEeCCEEEEEcC
Confidence 4578999997642 1222 33567888887777766553
No 79
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=48.81 E-value=40 Score=25.03 Aligned_cols=22 Identities=32% Similarity=0.155 Sum_probs=15.4
Q ss_pred ceEEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 289 SALYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 289 ~~~~li~~~~~~~~~~~l~a~s~~er 314 (315)
.+|-|+ . +..+|.|.|.|.+++
T Consensus 73 ~~Fki~-~---~~~~y~f~A~s~e~~ 94 (112)
T 2coc_A 73 HVWKLQ-W---AKQSWYLSASSAELQ 94 (112)
T ss_dssp EEEEEE-E---TTEEEEEEESSHHHH
T ss_pred CEEEEe-c---CCeEEEEEcCCHHHH
Confidence 355554 3 246899999999875
No 80
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=48.44 E-value=61 Score=23.60 Aligned_cols=86 Identities=9% Similarity=0.067 Sum_probs=55.9
Q ss_pred HHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHhCCcccCCCcchhhhhhhhhccchHHHHHHHHhhCCCCchhHHHHHHH
Q psy11457 46 ATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELTKVKRA 125 (315)
Q Consensus 46 ~~Yc~~~~~a~~~l~~~~~~~~~f~~fl~~~e~~~~~~rl~L~~~L~~PvQRitkY~LLL~~llk~T~~~~~e~~~l~~A 125 (315)
.+||++...+++++.+.++.|.. .++...=.+-+-.-+|.|+..+--|-..+....+.-..++.|+.-
T Consensus 3 ~ef~~~l~~sv~if~NRmksn~~------------RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee~R~~yE~LQDk 70 (98)
T 3f1i_H 3 EQFLKALQNAVTTFVNRMKSNHM------------RGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRLYYEGLQDK 70 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------------HTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh------------CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888999999988888765432 122333345555666777766554444444444444578889999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11457 126 LDRSKEILNYVNQAVKEA 143 (315)
Q Consensus 126 l~~ik~i~~~vn~~~~~~ 143 (315)
+..+++.-..++.--.+.
T Consensus 71 L~qi~eAR~ALdaLR~eH 88 (98)
T 3f1i_H 71 LAQIRDARGALSALREEH 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999988888777655544
No 81
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=47.82 E-value=17 Score=27.38 Aligned_cols=14 Identities=36% Similarity=0.342 Sum_probs=12.1
Q ss_pred CeeEEEEcCCcccc
Q psy11457 301 AQIYDLVASSASER 314 (315)
Q Consensus 301 ~~~~~l~a~s~~er 314 (315)
.+.|.+.|.|.+||
T Consensus 90 ~~~l~l~A~s~~e~ 103 (117)
T 2rov_A 90 AKNLLLLANSTEEQ 103 (117)
T ss_dssp CEEEEEECSSHHHH
T ss_pred CcEEEEEeCCHHHH
Confidence 47899999999987
No 82
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=46.30 E-value=56 Score=24.00 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=21.5
Q ss_pred EEEEeeEEEEeec-------CCCcceEEEEEecCCcEEEEE
Q psy11457 182 LIYEGNLQLRIAT-------TRQKLIELYVLLLEDIIVLLQ 215 (315)
Q Consensus 182 Li~eG~l~~~~~~-------~~~k~~~~~~fLf~d~Ll~~~ 215 (315)
.+++|.|..+... +....+.++++|=++.|.+-+
T Consensus 8 v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk 48 (123)
T 1wjm_A 8 EQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYK 48 (123)
T ss_dssp CCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEES
T ss_pred eEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEE
Confidence 4577888765431 133467888888887766554
No 83
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=45.71 E-value=29 Score=29.88 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=20.6
Q ss_pred EEEeeEEEEeecCCCcceEEEEEecCCcEEEE
Q psy11457 183 IYEGNLQLRIATTRQKLIELYVLLLEDIIVLL 214 (315)
Q Consensus 183 i~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~ 214 (315)
.++|.|..+.+ ++.+.+.++++|-++.|.+.
T Consensus 169 ~~~G~L~k~~~-~~k~WkkR~fvL~~~~L~yy 199 (291)
T 3tca_A 169 ELEGALYLKED-GKKSWKRRYFLLRASGIYYV 199 (291)
T ss_dssp CCEEEEEEECT-TSSCEEEEEEEECSSEEEEC
T ss_pred ceEEEEEEeCC-CCCCceEEEEEEeCCEEEEE
Confidence 35798876543 44557788888877665544
No 84
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=44.43 E-value=32 Score=31.63 Aligned_cols=29 Identities=10% Similarity=0.043 Sum_probs=18.7
Q ss_pred ccCceEEEEEcCCCCCeeEEEEcCCcccc
Q psy11457 286 NDRSALYLVNTSQHSAQIYDLVASSASER 314 (315)
Q Consensus 286 ~~~~~~~li~~~~~~~~~~~l~a~s~~er 314 (315)
....+|-+......+...|.|.|.|.+|+
T Consensus 206 ~~~~~f~I~~~~~~~~R~y~l~A~s~~e~ 234 (386)
T 3lju_X 206 GHPHGLQVTYLKDNSTRNIFIYHEDGKEI 234 (386)
T ss_dssp TSTTCEEEEEEETTEEEEEEEECSSHHHH
T ss_pred CCCceEEEEEecCCCceEEEEEcCCHHHH
Confidence 34456655533223356999999998875
No 85
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=43.88 E-value=34 Score=31.48 Aligned_cols=37 Identities=5% Similarity=0.165 Sum_probs=24.8
Q ss_pred ceEEEEeeEEEEeecCCCcceEEEEEecCCcEEEEEe
Q psy11457 180 HKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQK 216 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~ 216 (315)
+..+++|.|....+......+.++++|-++.|.+-+.
T Consensus 267 ~~~~k~G~L~K~g~~~~k~WKkRwFVL~~~~L~YYk~ 303 (386)
T 3lju_X 267 RNYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKD 303 (386)
T ss_dssp CCCSEEEEEEECCTTSCSCCEEEEEEEETTEEEEESS
T ss_pred cccceeeeEEEECCCCCCCCcccEEEEECCEEEEEec
Confidence 5678899998654322134678888888777776543
No 86
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=35.87 E-value=94 Score=22.75 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=20.1
Q ss_pred EEEeeEEEEee---c----CCCcceEEEEEecCCcEEEEE
Q psy11457 183 IYEGNLQLRIA---T----TRQKLIELYVLLLEDIIVLLQ 215 (315)
Q Consensus 183 i~eG~l~~~~~---~----~~~k~~~~~~fLf~d~Ll~~~ 215 (315)
.++|.|..+.. . ++...+.++++|=.+.|.+-+
T Consensus 9 ~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~L~~yk 48 (122)
T 1dro_A 9 GHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYK 48 (122)
T ss_dssp SEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEES
T ss_pred EEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEe
Confidence 46788865432 1 133357888888777666554
No 87
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=34.99 E-value=25 Score=19.40 Aligned_cols=16 Identities=13% Similarity=0.248 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHHhH
Q psy11457 1 MLDIHSTFNNSMKLKR 16 (315)
Q Consensus 1 ll~~H~~fl~~L~~~~ 16 (315)
|..+|..||..+++..
T Consensus 6 iwklheeflkkfeell 21 (32)
T 1m3w_A 6 IWKLHEEFLKKFEELL 21 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3467788877776543
No 88
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=28.72 E-value=1.3e+02 Score=26.30 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=22.9
Q ss_pred EEeeEEEEeecCCCcceEEEEEecCCcEEEEEec
Q psy11457 184 YEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQ 217 (315)
Q Consensus 184 ~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~ 217 (315)
.+|.|..+. .++++.+.++++|=.+.|.+..+.
T Consensus 160 ~~G~L~~k~-~~~k~WkkRyfvLr~sgLyy~~K~ 192 (281)
T 4gmv_A 160 IEGVLWLKD-DGKKSWKKRYFLLRASGIYYVPKG 192 (281)
T ss_dssp CEEEEEEEC-TTSSCEEEEEEEECSSCEEEC---
T ss_pred cEEEEEEEC-CCCCCCeEEEEEEeCCEEEEEeCC
Confidence 468886554 345678899999999998877654
No 89
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=25.55 E-value=2.2e+02 Score=25.82 Aligned_cols=31 Identities=26% Similarity=0.226 Sum_probs=18.9
Q ss_pred eEEEEeeEEEEeecCCCc-ceEEEEEecC-CcEEE
Q psy11457 181 KLIYEGNLQLRIATTRQK-LIELYVLLLE-DIIVL 213 (315)
Q Consensus 181 ~Li~eG~l~~~~~~~~~k-~~~~~~fLf~-d~Ll~ 213 (315)
..+++|.|.++.. ..+ .+.++++|-+ ..|++
T Consensus 5 ~v~keG~L~K~g~--~~k~Wk~r~fvL~~~~~l~y 37 (446)
T 4ejn_A 5 AIVKEGWLHKRGE--YIKTWRPRYFLLKNDGTFIG 37 (446)
T ss_dssp CEEEEEEEEEEET--TTTEEEEEEEEEETTSBEEE
T ss_pred eEEEEeeEEeecc--ccccccceEEEEeeCCEEEE
Confidence 4789999986643 444 5566666643 44444
No 90
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=23.74 E-value=64 Score=27.88 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=18.0
Q ss_pred ceEEEEeeEEEEeecCCCcceEEEEEecCC
Q psy11457 180 HKLIYEGNLQLRIATTRQKLIELYVLLLED 209 (315)
Q Consensus 180 R~Li~eG~l~~~~~~~~~k~~~~~~fLf~d 209 (315)
...+++|.|.++ +..+.++++|-.+
T Consensus 8 ~~v~k~G~L~K~-----K~WkkRwFVL~~~ 32 (264)
T 1qqg_A 8 SDVRKVGYLRKP-----KSMHKRFFVLRAA 32 (264)
T ss_dssp -CEEEEEEEECT-----TTCCEEEEEEECC
T ss_pred CCccEEEEEEEC-----CCCEeEEEEEECC
Confidence 346899999754 2366888888877
No 91
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=22.86 E-value=1.7e+02 Score=25.10 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=25.2
Q ss_pred EEEeeEEEEeecCCCcceEEEEEecCCcEEEEEec
Q psy11457 183 IYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQ 217 (315)
Q Consensus 183 i~eG~l~~~~~~~~~k~~~~~~fLf~d~Ll~~~~~ 217 (315)
-.+|.|..+. .++++.+.++++|=.+.|.+.++.
T Consensus 133 ~~~G~L~~ke-~~~K~WkkRyfvLr~sgLy~~~k~ 166 (256)
T 3hk0_A 133 EIQGFLHVKE-LGKKSWKKLYVCLRRSGLYCSTKG 166 (256)
T ss_dssp EEEEEEEEEC-TTSSCEEEEEEEEETTEEEEESST
T ss_pred cceeEEEEec-CCCCcceEEEEEEeCCEEEEEecC
Confidence 4678887554 346678899999999998777643
No 92
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=20.39 E-value=1.4e+02 Score=22.03 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=20.5
Q ss_pred EEEEeeEEEEee--cC----CCcceEEEEEecCCcEEEEE
Q psy11457 182 LIYEGNLQLRIA--TT----RQKLIELYVLLLEDIIVLLQ 215 (315)
Q Consensus 182 Li~eG~l~~~~~--~~----~~k~~~~~~fLf~d~Ll~~~ 215 (315)
...+|.|..+.- .| +.....++++|=.+.|.+-+
T Consensus 8 v~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~~~~L~~yK 47 (124)
T 3pp2_A 8 LDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFK 47 (124)
T ss_dssp -CEEEEEEEEEEEETTEECSSCCCEEEEEEEETTEEEEES
T ss_pred EEEEEEEEEEEeccCCccCCCCCceEEEEEEECCEEEEEe
Confidence 456777765421 12 23467888888888777665
Done!