RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11457
(315 letters)
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor
11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 118 bits (297), Expect = 1e-32
Identities = 77/157 (49%), Positives = 112/157 (71%)
Query: 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLR 60
+++IH+++ +MK R+E P++ ++ DL+L FDG A E Q+ AA FCS Q IALE ++
Sbjct: 72 LIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIK 131
Query: 61 ERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELT 120
++RK+SR F+ EAE +P CRRLQL+D+I + M RLTKYPLL ++ K+T +E
Sbjct: 132 TKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHE 191
Query: 121 KVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLD 157
K+ RA D+ +EIL YVN+AVK+ E++HRL QKRLD
Sbjct: 192 KLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLD 228
Score = 40.6 bits (94), Expect = 9e-05
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 261 DWTKSVPEDILRSLSPREKKRQEVIND 287
+W +V +D++ L+ RE RQEVIN+
Sbjct: 2 NWQHTVGKDVVAGLTQREIDRQEVINE 28
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor
12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Length = 234
Score = 107 bits (267), Expect = 2e-28
Identities = 87/161 (54%), Positives = 110/161 (68%), Gaps = 3/161 (1%)
Query: 1 MLDIHSTFNNSMK--LKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALES 58
+L +H N MK KR E+ V+ +G+ LL F G E + AAATFCS Q ALE
Sbjct: 73 ILQLHIGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAATFCSNQPFALEM 132
Query: 59 LRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENE 118
++ R++KDSR F+ +AE NPLCRRLQLKDIIPT M RLTKYPLL N+AKYT E
Sbjct: 133 IKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYTEWPT-E 191
Query: 119 LTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRT 159
KVK+A D ++ILN+VNQAVKEAE++ RL + Q+RLD +
Sbjct: 192 REKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLDTS 232
Score = 44.4 bits (104), Expect = 6e-06
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 259 PPDWTKSVPEDILRSLSPREKKRQEVIND 287
PP+W + V ++L L P E KRQEVIN+
Sbjct: 1 PPNWQQLVSREVLLGLKPCEIKRQEVINE 29
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 210
Score = 91.0 bits (225), Expect = 2e-22
Identities = 39/156 (25%), Positives = 79/156 (50%), Gaps = 9/156 (5%)
Query: 1 MLDIHSTFNNSMKLKRKES---PVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALE 57
++ + ++++++K S V +GD+L + FCSRQ
Sbjct: 60 LIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLP------HMQPYIRFCSRQLNGAA 113
Query: 58 SLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNEN 117
++++ + F+ E++P C+ + L I M R+T+YPL+ N+ + T +N
Sbjct: 114 LIQQKTDEAPDFKEFVKRLEMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHP 173
Query: 118 ELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQ 153
+ + +K AL++++E+ + VN+ V+E E+ RL IQ
Sbjct: 174 DHSHLKHALEKAEELCSQVNEGVREKENSDRLEWIQ 209
Score = 27.4 bits (60), Expect = 2.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 273 SLSPREKKRQEVIND 287
L+P E+KRQ I++
Sbjct: 2 MLTPTERKRQGYIHE 16
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 79.8 bits (196), Expect = 2e-18
Identities = 19/155 (12%), Positives = 52/155 (33%), Gaps = 6/155 (3%)
Query: 1 MLDIHSTFNNSMKLKRK---ESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALE 57
+ ++ ++ + E VG D+ + A + ++ A + +
Sbjct: 55 IHELSVKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYESYAR--DILRPGFHD 112
Query: 58 SLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNEN 117
+ K + E + L ++ + Y L L + + D E
Sbjct: 113 RFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQE- 171
Query: 118 ELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEI 152
+ +K+A+ + + + + ++ + RL+E
Sbjct: 172 DKECLKQAITALLNVQSGMEKICSKSLAKRRLSES 206
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 78.2 bits (192), Expect = 1e-17
Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 9/149 (6%)
Query: 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLR 60
+ S++ K VG L++ + T+C+ A+ L
Sbjct: 64 ICSFQQMLVQSLEECTKLPEAQQRVGGCFLNLMPQ-----MKTLYLTYCANHPSAVNVLT 118
Query: 61 ERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELT 120
E + E + L L + +RL KYP L L ++ D +
Sbjct: 119 EHSEE----LGEFMETKGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQ 174
Query: 121 KVKRALDRSKEILNYVNQAVKEAEDQHRL 149
+++++ K + + K E + ++
Sbjct: 175 DIQKSMAAFKNLSAQCQEVRKRKELELQI 203
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId:
10090]}
Length = 208
Score = 74.0 bits (181), Expect = 3e-16
Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 8/141 (5%)
Query: 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLR 60
+ +H+ F +K P + + + + +CS+ + A + L
Sbjct: 76 LFSVHTHFLKELK-DALAGPGATTLYQVFIKYKE------RFLVYGRYCSQVESASKHLD 128
Query: 61 ERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELT 120
+ + L E R L+D++ M R+ KY LL L K+T D E
Sbjct: 129 QVATAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQDAT-EKE 187
Query: 121 KVKRALDRSKEILNYVNQAVK 141
++ ALD +++ VN+ +
Sbjct: 188 NLRLALDAMRDLAQCVNEVKR 208
>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange
factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId:
9606]}
Length = 140
Score = 71.7 bits (175), Expect = 4e-16
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 33/158 (20%)
Query: 159 TPFEKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQD 218
T E+ NPL E+++LDLT K+I+EG L RI+ + K ++L+VLLLED++VLLQKQD
Sbjct: 2 TALERASNPLAAEFKSLDLTTRKMIHEGPLTWRIS--KDKTLDLHVLLLEDLLVLLQKQD 59
Query: 219 DSKSFDSPSNSCEAVSSSGPPPPSSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPRE 278
+ S + S DS P +
Sbjct: 60 EKLLLKCHSKTAVGSS---------------DSKQTFSPVLKLNAVLI------------ 92
Query: 279 KKRQEVINDRSALYLVNTS-QHSAQIYDLVASSASERK 315
+ V D+ A +++ TS QIY+LVA ++S++
Sbjct: 93 ---RSVATDKRAFFIICTSKLGPPQIYELVALTSSDKN 127
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor
9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 203
Score = 68.6 bits (167), Expect = 2e-14
Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 8/145 (5%)
Query: 1 MLDIHSTFNNSMKLKRK-ESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESL 59
+ F ++ + + P + ++G L+ D + +C+ A L
Sbjct: 66 IYRFQMGFVRDLEKQYNNDDPHLSEIGPCFLEHQD------GFWIYSEYCNNHLDACMEL 119
Query: 60 RERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENEL 119
+ KDSR F L + + + T + ++ KYPL A L KYT + ++
Sbjct: 120 -SKLMKDSRYQHFFEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDY 178
Query: 120 TKVKRALDRSKEILNYVNQAVKEAE 144
V AL + + +N+ + E
Sbjct: 179 RYVAAALAVMRNVTQQINERKRRLE 203
Score = 26.2 bits (57), Expect = 5.1
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 270 ILRSLSPREKKRQEVIND 287
+ R L R++ R VIN+
Sbjct: 4 LGRPLQNRDQMRANVINE 21
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion
and metastasis inducing protein 1) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 206
Score = 61.7 bits (149), Expect = 5e-12
Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 21/157 (13%)
Query: 1 MLDIHSTFNNSMKLKRKESP-------------VVGDVGDLLLDMFDGAAGEAFQRAAAT 47
M++ F +++ + P V+ +G L D + +
Sbjct: 58 MVEFQVEFLKTLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYAD------RFKLYSA 111
Query: 48 FCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFAN 107
FC+ + L + + D+ AFL L+ + + R+ KYPLL
Sbjct: 112 FCASHTKVPKVL-VKAKTDTAFKAFLDAQN-PRQQHSSTLESYLIKPIQRVLKYPLLLRE 169
Query: 108 LAKYTVDNENELTKVKRALDRSKEILNYVNQAVKEAE 144
L T E + A+ ++ +++N+ K E
Sbjct: 170 LFALTDAESEEHYHLDVAIKTMNKVASHINEMQKIHE 206
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 59.0 bits (142), Expect = 4e-11
Identities = 22/140 (15%), Positives = 45/140 (32%), Gaps = 18/140 (12%)
Query: 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLR 60
+ + H+ +K K + DVG + D + T+C + + + +
Sbjct: 58 IYEFHNNIF--LKELEKYEQLPEDVGHCFVTWAD------KFQMYVTYCKNKPDSTQLIL 109
Query: 61 ERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELT 120
E + + + + R+TKY LL L + + E+
Sbjct: 110 EHAGSY-------FDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGEI- 161
Query: 121 KVKRALDRSKEILNYVNQAV 140
K L+ + N A+
Sbjct: 162 --KDGLEVMLSVPKRANDAM 179
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 195
Score = 59.0 bits (142), Expect = 4e-11
Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 15/141 (10%)
Query: 1 MLDIHSTFNNSMKLKRKESPVVGDVGDLLLDMFDGAAGEAFQRAAATFCSRQQIALESLR 60
+ H+ + P VG L+ + + +C + + R
Sbjct: 66 IYHFHNRIFLRELESCIDCP--ELVGRCFLERME------EFQIYEKYCQNKPRSESLWR 117
Query: 61 ERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLRLTKYPLLFANLAKYTVDNENELT 120
+ + L +L L + + R+TKY LL + KY+ E
Sbjct: 118 QCSDCPFF------QECQKKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKHCE-GAE 170
Query: 121 KVKRALDRSKEILNYVNQAVK 141
++ AL IL VN ++
Sbjct: 171 DLQEALSSILGILKAVNDSMH 191
>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange
factor 12 {Human (Homo sapiens), gamma isoform [TaxId:
9606]}
Length = 114
Score = 52.0 bits (124), Expect = 2e-09
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 32/134 (23%)
Query: 182 LIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSPSNSCEAVSSSGPPPP 241
+I+EG L ++ R K I+LY LLLEDI+VLLQKQDD S
Sbjct: 1 MIHEGPLVWKVN--RDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSK---------ILAS 49
Query: 242 SSSSRVPWDSDTEAEPDPPDWTKSVPEDILRSLSPREKKRQEVINDRSALYLVNTSQHSA 301
++ S+ + + ++R +V D AL++++ S + A
Sbjct: 50 TADSKHTFSPV-----------IKLSTVLVR----------QVATDNKALFVISMSDNGA 88
Query: 302 QIYDLVASSASERK 315
QIY+LVA + SE+
Sbjct: 89 QIYELVAQTVSEKT 102
>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 142
Score = 32.9 bits (74), Expect = 0.020
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 162 EKVDNPLVNEYRNLDLTRHKLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQKQDDSK 221
E + LV L K ++ G L ELY L D ++L Q
Sbjct: 5 EGLSEQLVFNSVTNCLGPRKFLHSGKLYKAKNNK-----ELYGFLFNDFLLLTQITKPLG 59
Query: 222 SFDS 225
S +
Sbjct: 60 SSGT 63
>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 109
Score = 29.7 bits (66), Expect = 0.17
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 181 KLIYEGNLQLRIATTRQKLIELYVLLLEDIIVLLQK 216
L+Y G+L A +L ++ L+ D +++
Sbjct: 3 YLVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATW 38
>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 29.2 bits (65), Expect = 0.29
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 181 KLIYEGNLQLRI-ATTRQKLIELYVLLLEDIIVLLQKQDDSKSFDSP 226
+LI + + Q+ T +K E ++ L E +V ++ DS
Sbjct: 12 ELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKY 58
>d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 436
Score = 27.9 bits (61), Expect = 2.0
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 105 FANLAKYTVDNENE-LTKVKRAL-DRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFE 162
L + + ++ L K+ AL + I + A++ + KRLD +
Sbjct: 16 GNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKRLDLFKGD 75
Query: 163 KVDN 166
K +
Sbjct: 76 KFEV 79
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core
{Synechocystis sp., GluR0 [TaxId: 1143]}
Length = 226
Score = 27.4 bits (59), Expect = 2.1
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 125 ALDRSKEILNYVNQAVKEAEDQHRLAEIQKR 155
L + + +N + +AE +R
Sbjct: 193 VLKENSPLQKTINVEMLNLLYSRVIAEFTER 223
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 25.3 bits (55), Expect = 8.3
Identities = 12/55 (21%), Positives = 28/55 (50%)
Query: 114 DNENELTKVKRALDRSKEILNYVNQAVKEAEDQHRLAEIQKRLDRTPFEKVDNPL 168
+N+ + +++ A +R+K L+ QA E + + + + R FE+++ L
Sbjct: 67 ENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADL 121
>d2fzta1 a.46.3.1 (A:1-78) Hypothetical protein TM0693 {Thermotoga
maritima [TaxId: 2336]}
Length = 78
Score = 24.1 bits (52), Expect = 9.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 264 KSVPEDILRSLSPREKKRQEVINDRSA 290
+ +P+D L + +++KR E+I R
Sbjct: 34 EGLPKDKLSEILEKDRKRLEIIEKRKT 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.364
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,092,675
Number of extensions: 50233
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 32
Length of query: 315
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,240,546
Effective search space: 285325580
Effective search space used: 285325580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.5 bits)