BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11458
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TXD|A Chain A, Crystal Structure Of The Dh/ph Domains Of
Leukemia-associated Rhogef
pdb|1X86|A Chain A, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|C Chain C, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|E Chain E, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|G Chain G, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
Length = 385
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 43/68 (63%)
Query: 61 MEYFDGXXXXXXXXXXXTFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKD 120
+ +F G TFCS Q ALE ++ R++KDSR F+ +AE NPLCRRLQLKD
Sbjct: 106 LTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKD 165
Query: 121 IIPTGMLR 128
IIPT M R
Sbjct: 166 IIPTQMQR 173
>pdb|3ODW|A Chain A, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
pdb|3ODW|B Chain B, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
Length = 536
Score = 71.6 bits (174), Expect = 2e-13, Method: Composition-based stats.
Identities = 35/65 (53%), Positives = 40/65 (61%)
Query: 64 FDGXXXXXXXXXXXTFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIP 123
FDG FCSRQ ALE L+ ++RKD R AF+ EAE P CRRLQLKD+IP
Sbjct: 264 FDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIP 323
Query: 124 TGMLR 128
T M R
Sbjct: 324 TEMQR 328
>pdb|3ODX|A Chain A, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
pdb|3ODX|B Chain B, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
Length = 417
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 40/65 (61%)
Query: 64 FDGXXXXXXXXXXXTFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIP 123
FDG FCSRQ ALE L+ ++RKD R AF+ EAE P CRRLQLKD+IP
Sbjct: 151 FDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIP 210
Query: 124 TGMLR 128
T M R
Sbjct: 211 TEMQR 215
>pdb|3P6A|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
pdb|3P6A|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
Length = 377
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 40/65 (61%)
Query: 64 FDGXXXXXXXXXXXTFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIP 123
FDG FCSRQ ALE L+ ++RKD R AF+ EAE P CRRLQLKD+IP
Sbjct: 111 FDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIP 170
Query: 124 TGMLR 128
T M R
Sbjct: 171 TEMQR 175
>pdb|3ODO|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
pdb|3ODO|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
Length = 375
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 40/65 (61%)
Query: 64 FDGXXXXXXXXXXXTFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIP 123
FDG FCSRQ ALE L+ ++RKD R AF+ EAE P CRRLQLKD+IP
Sbjct: 109 FDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIP 168
Query: 124 TGMLR 128
T M R
Sbjct: 169 TEMQR 173
>pdb|3KZ1|A Chain A, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|B Chain B, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 383
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 40 PGYWKICNEYCEYQNQEYQ----------MNMEYFDGXXXXXXXXXXXTFCSRQQIALES 89
P +I N +CE + + + + FDG FCS Q IALE
Sbjct: 75 PELIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALEL 134
Query: 90 LRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
++ ++RK+SR F+ EAE +P CRRLQL+D+I + M R
Sbjct: 135 IKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQR 173
>pdb|1XCG|A Chain A, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|E Chain E, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
Length = 368
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 40 PGYWKICNEYCEYQNQEYQ----------MNMEYFDGXXXXXXXXXXXTFCSRQQIALES 89
P +I N +CE + + + + FDG FCS Q IALE
Sbjct: 70 PELIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALEL 129
Query: 90 LRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
++ ++RK+SR F+ EAE +P CRRLQL+D+I + M R
Sbjct: 130 IKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQR 168
>pdb|3T06|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|E Chain E, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 418
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 40 PGYWKICNEYCEYQNQEYQ----------MNMEYFDGXXXXXXXXXXXTFCSRQQIALES 89
P +I N +CE + + + + FDG FCS Q IALE
Sbjct: 112 PELIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALEL 171
Query: 90 LRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
++ ++RK+SR F+ EAE +P CRRLQL+D+I + M R
Sbjct: 172 IKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQR 210
>pdb|3AVR|A Chain A, Catalytic Fragment Of UtxKDM6A BOUND WITH HISTONE H3K27ME3
PEPTIDE, N-Oxyalylglycine, And Ni(Ii)
pdb|3AVS|A Chain A, Catalytic Fragment Of UtxKDM6A BOUND WITH
N-Oxyalylglycine, And Ni(Ii)
Length = 531
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 35 DCRW---SPGYWKICNEYCEYQNQEYQM 59
DC W GYW + N++CE N + M
Sbjct: 293 DCEWFVVPEGYWGVLNDFCEKNNLNFLM 320
>pdb|2Z0Q|A Chain A, Crystal Structure Of Dh-Ph Domain Of Rhogef3(Xpln)
Length = 352
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 78 TFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQL 118
++CS Q+A ++L + +++D R+ FL +P R+L L
Sbjct: 110 SYCS-NQVAAKALLDHKKQDHRVQDFLQRCLESPFSRKLDL 149
>pdb|3ZLI|A Chain A, Crystal Structure Of Jmjc Domain Of Human Histone
Demethylase Uty
pdb|3ZLI|B Chain B, Crystal Structure Of Jmjc Domain Of Human Histone
Demethylase Uty
Length = 478
Score = 27.3 bits (59), Expect = 3.9, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 35 DCRW---SPGYWKICNEYCEYQNQEYQMN 60
DC W YW + N++CE N + M+
Sbjct: 234 DCEWFVVPEDYWGVLNDFCEKNNLNFLMS 262
>pdb|3EO2|A Chain A, Crystal Structure Of The Rhogef Domain Of Human
Neuroepithelial Cell- Transforming Gene 1 Protein
Length = 231
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 79 FCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQL 118
+CS Q+A ++L +++++D R+ FL +P R+L L
Sbjct: 124 YCS-NQLAAKALLDQKKQDPRVQDFLQRCLESPFSRKLDL 162
>pdb|3O8E|B Chain B, Structure Of Extracelllar Portion Of Cd46 In Complex With
Adenovirus Type 11 Knob
pdb|3O8E|D Chain D, Structure Of Extracelllar Portion Of Cd46 In Complex With
Adenovirus Type 11 Knob
Length = 252
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 17/55 (30%)
Query: 2 TPPPVVNGGRRSYSESD-YTYID----------------IVSQNDIYAGNDCRWS 39
TPPP + G+ ++SE + + Y+D ++ ++ IY G++ WS
Sbjct: 129 TPPPKIKNGKHTFSEVEVFEYLDAVTYSCDPAPGPDPFSLIGESTIYCGDNSVWS 183
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|D Chain D, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 352
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 79 FCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
FCSRQ ++++ + F+ E++P C+ + L I M R
Sbjct: 104 FCSRQLNGAALIQQKTDEAPDFKEFVKRLEMDPRCKGMPLSSFILKPMQR 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,534,479
Number of Sequences: 62578
Number of extensions: 157582
Number of successful extensions: 334
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 14
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)