BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11458
(159 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NZN5|ARHGC_HUMAN Rho guanine nucleotide exchange factor 12 OS=Homo sapiens
GN=ARHGEF12 PE=1 SV=1
Length = 1544
Score = 85.9 bits (211), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/68 (57%), Positives = 48/68 (70%)
Query: 61 MEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKD 120
+ +F G E + AAATFCS Q ALE ++ R++KDSR F+ +AE NPLCRRLQLKD
Sbjct: 869 LTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKD 928
Query: 121 IIPTGMLR 128
IIPT M R
Sbjct: 929 IIPTQMQR 936
>sp|Q8R4H2|ARHGC_MOUSE Rho guanine nucleotide exchange factor 12 OS=Mus musculus
GN=Arhgef12 PE=1 SV=2
Length = 1543
Score = 85.5 bits (210), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/66 (59%), Positives = 48/66 (72%)
Query: 63 YFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDII 122
+F G E + AAATFCS Q ALE ++ R++KDSR + F+ +AE NPLCRRLQLKDII
Sbjct: 871 WFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFHTFVQDAESNPLCRRLQLKDII 930
Query: 123 PTGMLR 128
PT M R
Sbjct: 931 PTQMQR 936
>sp|Q92888|ARHG1_HUMAN Rho guanine nucleotide exchange factor 1 OS=Homo sapiens GN=ARHGEF1
PE=1 SV=2
Length = 912
Score = 84.0 bits (206), Expect = 4e-16, Method: Composition-based stats.
Identities = 39/65 (60%), Positives = 47/65 (72%)
Query: 64 FDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIP 123
FDGA G FQ+ ++ FCSRQ ALE L+ ++RKD R AF+ EAE P CRRLQLKD+IP
Sbjct: 500 FDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIP 559
Query: 124 TGMLR 128
T M R
Sbjct: 560 TEMQR 564
>sp|Q61210|ARHG1_MOUSE Rho guanine nucleotide exchange factor 1 OS=Mus musculus GN=Arhgef1
PE=1 SV=2
Length = 920
Score = 82.8 bits (203), Expect = 8e-16, Method: Composition-based stats.
Identities = 38/65 (58%), Positives = 47/65 (72%)
Query: 64 FDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIP 123
FDGA G FQ+ ++ FCSRQ ALE L+ ++RK+ R AF+ EAE P CRRLQLKD+IP
Sbjct: 499 FDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESRPRCRRLQLKDMIP 558
Query: 124 TGMLR 128
T M R
Sbjct: 559 TEMQR 563
>sp|Q9Z1I6|ARHG1_RAT Rho guanine nucleotide exchange factor 1 OS=Rattus norvegicus
GN=Arhgef1 PE=1 SV=1
Length = 919
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/65 (58%), Positives = 47/65 (72%)
Query: 64 FDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIP 123
FDGA G FQ+ ++ FCSRQ ALE L+ ++RK+ R AF+ EAE P CRRLQLKD+IP
Sbjct: 498 FDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKEPRFCAFVQEAESRPRCRRLQLKDMIP 557
Query: 124 TGMLR 128
T M R
Sbjct: 558 TEMQR 562
>sp|Q9ES67|ARHGB_RAT Rho guanine nucleotide exchange factor 11 OS=Rattus norvegicus
GN=Arhgef11 PE=1 SV=1
Length = 1527
Score = 76.3 bits (186), Expect = 8e-14, Method: Composition-based stats.
Identities = 35/65 (53%), Positives = 46/65 (70%)
Query: 64 FDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIP 123
FDG A E Q+ AA FCS Q +ALE +R ++RK+SR F+ EAE +P CRRLQL+D+I
Sbjct: 825 FDGPAREELQQVAAQFCSYQSVALELIRTKQRKESRFQLFMQEAESHPQCRRLQLRDLIV 884
Query: 124 TGMLR 128
+ M R
Sbjct: 885 SEMQR 889
>sp|O15085|ARHGB_HUMAN Rho guanine nucleotide exchange factor 11 OS=Homo sapiens
GN=ARHGEF11 PE=1 SV=1
Length = 1522
Score = 75.1 bits (183), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 10/99 (10%)
Query: 40 PGYWKICNEYCEYQNQEYQ----------MNMEYFDGAAGEAFQRAAATFCSRQQIALES 89
P +I N +CE + + + + FDG A E Q+ AA FCS Q IALE
Sbjct: 783 PELIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALEL 842
Query: 90 LRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
++ ++RK+SR F+ EAE +P CRRLQL+D+I + M R
Sbjct: 843 IKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQR 881
>sp|O94827|PKHG5_HUMAN Pleckstrin homology domain-containing family G member 5 OS=Homo
sapiens GN=PLEKHG5 PE=2 SV=3
Length = 1062
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 79 FCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDII 122
+C ++ +E +R R + A++T AE +P C+RL+L D++
Sbjct: 494 YCMEEEGCMEYMRGLLRDNDLFRAYITWAEKHPQCQRLKLSDML 537
>sp|Q6VNZ9|MYF6_DANRE Myogenic factor 6 OS=Danio rerio GN=myf6 PE=2 SV=1
Length = 239
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 14 YSESDYTYIDIVSQNDIYAGNDCRWSPGYWKICNEY-CEYQNQEYQMNMEYFDGAAGEAF 72
Y E D+ +D+ + +Y GND SPG + +E CE +E+ +
Sbjct: 17 YLEGDHGTLDMPGVSPLYEGNDSPLSPGQDPVPSETGCESSGEEHVLAPPGLQAHCEGQC 76
Query: 73 QRAAATFCSRQQIALE-----SLRERRR 95
A C R+ + +LRERRR
Sbjct: 77 LMWACKICKRKSAPTDRRKAATLRERRR 104
>sp|Q6RFZ7|PKHG5_RAT Pleckstrin homology domain-containing family G member 5 OS=Rattus
norvegicus GN=Plekhg5 PE=1 SV=1
Length = 1039
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 79 FCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDII 122
+C ++ +E +R R + A++T AE + C+RL+L D++
Sbjct: 474 YCMEEEGCMEYMRSLLRDNDLFRAYVTWAEKHQQCQRLKLSDML 517
>sp|Q63KP6|SYI2_BURPS Isoleucine--tRNA ligase 2 OS=Burkholderia pseudomallei (strain
K96243) GN=ileS2 PE=3 SV=1
Length = 967
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 4 PPVVNGGRRSYSESDYTYIDIVSQNDIYAGNDCRWSPGYWKICNEYCEYQNQEYQMNMEY 63
PP NG + DIV ++ AG D +W PG W C E+++ +
Sbjct: 57 PPYANGDIHIGHAVNKVLKDIVLKSRFAAGYDAQWIPG-WD-----CHGMPIEHRIEQLH 110
Query: 64 FDGAAGEAFQRAAATFCSRQQIALESLRERRRKD 97
G EA QR + Q ER+R+D
Sbjct: 111 GRGLPPEAVQRLCREYAFEQT-------ERQRRD 137
>sp|Q12802|AKP13_HUMAN A-kinase anchor protein 13 OS=Homo sapiens GN=AKAP13 PE=1 SV=2
Length = 2813
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 27/59 (45%)
Query: 64 FDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDII 122
F G E ++ FC + ++ ++ KD R AF+ + + + RRL + + I
Sbjct: 2085 FSGENAERLKKTYGKFCGQHNQSVNYFKDLYAKDKRFQAFVKKKMSSSVVRRLGIPECI 2143
>sp|Q66T02|PKHG5_MOUSE Pleckstrin homology domain-containing family G member 5 OS=Mus
musculus GN=Plekhg5 PE=1 SV=1
Length = 1073
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 79 FCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDII 122
+C ++ +E +R R + A++T AE + C+RL+L D++
Sbjct: 508 YCMEEEGCMEYMRGLLRDNDLFRAYVTWAEKHQQCQRLKLSDML 551
>sp|Q9TW28|MYOM_DICDI Myosin-M heavy chain OS=Dictyostelium discoideum GN=myoM PE=1 SV=1
Length = 1737
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 72 FQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDII 122
+ + T+CS QQ AL+ L E + K+ +L + +CR L L I
Sbjct: 1474 YLKMYTTYCSNQQNALKILEEEKIKNQPFREYLEFCMNDSVCRGLPLNSFI 1524
>sp|O15550|KDM6A_HUMAN Lysine-specific demethylase 6A OS=Homo sapiens GN=KDM6A PE=1 SV=2
Length = 1401
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 35 DCRW---SPGYWKICNEYCEYQNQEYQM 59
DC W GYW + N++CE N + M
Sbjct: 1163 DCEWFVVPEGYWGVLNDFCEKNNLNFLM 1190
>sp|O70546|KDM6A_MOUSE Lysine-specific demethylase 6A OS=Mus musculus GN=Kdm6a PE=1 SV=2
Length = 1401
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 35 DCRW---SPGYWKICNEYCEYQNQEYQM 59
DC W GYW + N++CE N + M
Sbjct: 1163 DCEWFVVPEGYWGVLNDFCEKNNLNFLM 1190
>sp|Q865S3|ARHG2_CANFA Rho guanine nucleotide exchange factor 2 OS=Canis familiaris
GN=ARHGEF2 PE=2 SV=1
Length = 986
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 64 FDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDII 122
F G + E ++A + FCSR AL+ +E +D R F+ + + + +R +++ I
Sbjct: 327 FSGPSAERMRKAYSEFCSRHTKALKLYKELYARDKRFQQFIRKVTRSAVLKRHGVQECI 385
>sp|A2QW83|PAN2_ASPNC PAB-dependent poly(A)-specific ribonuclease subunit pan2
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pan2 PE=3 SV=1
Length = 1150
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 70 EAFQRAAATFCSR-QQIALESLRERRRKDSRLNAFLTEAELNPLCRRL 116
EA R +C R QQ+A+ R + LNA LT NP+CRRL
Sbjct: 659 EAQNRGWCNYCRRYQQVAIRKSVHRMPQVLMLNAALT----NPICRRL 702
>sp|Q4UNB6|Y091_RICFE Uncharacterized protein RF_0091 OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=RF_0091 PE=3 SV=1
Length = 977
Score = 29.6 bits (65), Expect = 8.3, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 12 RSYSESDYTYIDIVSQNDIYAG---NDCRWSPGYWKICN 47
++ S+ +Y I + +Y G NDC W YWK CN
Sbjct: 204 KNCSQGQTSYEPICGKYSVYHGEYVNDCEWRDKYWK-CN 241
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,229,271
Number of Sequences: 539616
Number of extensions: 2172564
Number of successful extensions: 5210
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 5188
Number of HSP's gapped (non-prelim): 30
length of query: 159
length of database: 191,569,459
effective HSP length: 108
effective length of query: 51
effective length of database: 133,290,931
effective search space: 6797837481
effective search space used: 6797837481
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)