Query psy11458
Match_columns 159
No_of_seqs 120 out of 358
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 18:56:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3520|consensus 100.0 1.6E-29 3.5E-34 244.2 9.1 114 28-147 432-556 (1167)
2 KOG3521|consensus 99.8 6.4E-21 1.4E-25 177.4 4.5 86 71-157 271-356 (846)
3 KOG3523|consensus 99.8 2.1E-20 4.6E-25 172.5 7.2 100 41-146 315-416 (695)
4 smart00325 RhoGEF Guanine nucl 99.8 4.9E-19 1.1E-23 136.1 8.5 98 40-145 47-155 (180)
5 cd00160 RhoGEF Guanine nucleot 99.8 2.5E-18 5.4E-23 132.3 9.6 98 40-146 50-158 (181)
6 KOG4305|consensus 99.7 5.8E-19 1.3E-23 170.5 3.6 109 25-144 385-495 (1029)
7 PF00621 RhoGEF: RhoGEF domain 99.7 2.3E-17 5E-22 125.0 6.6 100 40-146 47-156 (180)
8 KOG2996|consensus 99.6 1.7E-15 3.7E-20 140.4 9.0 110 29-149 237-355 (865)
9 KOG4424|consensus 99.5 4.8E-14 1E-18 130.1 10.0 84 55-145 133-216 (623)
10 KOG3519|consensus 98.9 2.5E-09 5.4E-14 102.0 5.6 112 24-147 374-498 (756)
11 KOG3518|consensus 98.8 1.2E-08 2.6E-13 90.9 6.6 84 56-148 196-282 (521)
12 COG5422 ROM1 RhoGEF, Guanine n 98.6 1.7E-08 3.7E-13 97.5 1.6 120 26-157 535-665 (1175)
13 KOG3522|consensus 98.6 2E-07 4.3E-12 89.8 8.0 97 21-146 36-142 (925)
14 KOG0689|consensus 98.4 1.7E-07 3.7E-12 85.2 3.4 108 23-146 100-215 (448)
15 KOG4240|consensus 98.3 1.1E-06 2.4E-11 86.2 5.7 102 24-142 673-782 (1025)
16 KOG3524|consensus 98.1 4.4E-06 9.5E-11 79.6 6.1 98 40-143 438-535 (850)
17 KOG2070|consensus 97.7 9.8E-05 2.1E-09 68.6 7.1 94 40-143 150-253 (661)
18 KOG3531|consensus 97.0 0.00071 1.5E-08 66.0 4.7 96 42-145 584-697 (1036)
19 KOG3524|consensus 81.6 1.1 2.5E-05 43.7 2.6 97 39-145 448-544 (850)
20 KOG0584|consensus 48.1 17 0.00036 35.2 2.9 84 33-129 206-301 (632)
21 PF09280 XPC-binding: XPC-bind 44.7 25 0.00055 23.7 2.7 42 94-143 4-45 (59)
22 COG0789 SoxR Predicted transcr 41.9 5.5 0.00012 28.9 -1.0 22 3-24 27-49 (124)
23 PF03801 Ndc80_HEC: HEC/Ndc80p 39.9 6.3 0.00014 31.1 -1.1 38 117-158 92-137 (157)
24 PF01858 RB_A: Retinoblastoma- 39.1 87 0.0019 25.5 5.5 27 39-65 25-59 (194)
25 COG4359 Uncharacterized conser 33.3 80 0.0017 26.7 4.4 40 72-111 50-89 (220)
26 KOG1010|consensus 33.1 1.3E+02 0.0028 30.5 6.5 109 30-151 413-536 (920)
27 cd07589 BAR_DNMBP The Bin/Amph 27.9 3.2E+02 0.007 21.9 7.6 79 27-109 49-127 (195)
28 PF10945 DUF2629: Protein of u 25.8 13 0.00029 24.1 -1.1 32 11-44 10-41 (44)
29 cd04764 HTH_MlrA-like_sg1 Heli 25.8 23 0.00049 23.2 -0.0 17 3-19 27-43 (67)
30 cd04769 HTH_MerR2 Helix-Turn-H 24.4 28 0.0006 25.6 0.2 21 3-23 27-47 (116)
31 cd04763 HTH_MlrA-like Helix-Tu 24.3 27 0.00058 22.9 0.1 17 3-19 28-44 (68)
32 KOG0037|consensus 24.1 83 0.0018 26.8 3.0 73 21-93 120-199 (221)
33 COG3512 CRISPR-associated prot 23.4 2.5E+02 0.0054 21.5 5.1 89 44-159 24-116 (116)
34 cd08812 CARD_RIG-I_like Caspas 23.2 2.8E+02 0.0061 19.6 6.1 54 56-110 24-79 (88)
35 cd04786 HTH_MerR-like_sg7 Heli 20.9 1.5E+02 0.0033 22.4 3.8 23 3-25 27-50 (131)
36 PF13411 MerR_1: MerR HTH fami 20.7 26 0.00056 22.7 -0.5 19 3-21 27-45 (69)
37 cd04761 HTH_MerR-SF Helix-Turn 20.6 31 0.00068 20.7 -0.1 17 3-19 27-43 (49)
38 PF06757 Ins_allergen_rp: Inse 20.6 1.4E+02 0.0031 23.5 3.6 28 83-110 116-143 (179)
39 PF00636 Ribonuclease_3: Ribon 20.5 3.1E+02 0.0068 19.2 5.8 58 52-124 2-59 (114)
No 1
>KOG3520|consensus
Probab=99.96 E-value=1.6e-29 Score=244.22 Aligned_cols=114 Identities=32% Similarity=0.472 Sum_probs=106.4
Q ss_pred chhhhcccccCChhhHHHHHHHHHH-----------HhHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhc
Q psy11458 28 NDIYAGNDCRWSPGYWKICNEYCEY-----------QNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRK 96 (159)
Q Consensus 28 ~di~~~n~~~~~~~Li~ih~~~~~~-----------v~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kk 96 (159)
+-||.|. ++|++||..|++. |+.|||+|+.+|+|++||.|+++|++||++|+.|+++||.+.+|
T Consensus 432 ~~LFP~L-----deL~eiH~~f~~~lk~rr~e~~~vI~~IGDlLl~~FsGe~ae~L~~~~a~FCs~q~~ALe~~K~k~~K 506 (1167)
T KOG3520|consen 432 NKLFPCL-----DELIEIHSSFLQRLKERRKESLVVIKRIGDLLLDQFSGENAERLKKTYAQFCSRQSIALEQLKTKQAK 506 (1167)
T ss_pred HHhcccH-----HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHcCchHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 4567765 6899999999865 46799999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccCC
Q psy11458 97 DSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIFP 147 (159)
Q Consensus 97 n~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~~ 147 (159)
|++|++|+++|+++|.||||+|+|||+..|||| |||||||++|+|+|+.+
T Consensus 507 D~rFq~fvkkaeS~p~cRRL~lkd~I~~v~QRL-TKYPLLle~I~k~T~~~ 556 (1167)
T KOG3520|consen 507 DKRFQAFVKKAESNPVCRRLGLKDCILLVTQRL-TKYPLLLERILKYTEDN 556 (1167)
T ss_pred cHHHHHHHHHhhcchHHHhhcchHHHHHHHHHH-hhchHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999 99999999999998743
No 2
>KOG3521|consensus
Probab=99.82 E-value=6.4e-21 Score=177.38 Aligned_cols=86 Identities=22% Similarity=0.290 Sum_probs=80.4
Q ss_pred HHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccCCcch
Q psy11458 71 AFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIFPWRL 150 (159)
Q Consensus 71 ~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~~~~~ 150 (159)
..+.+|..||..++.++++.+++.++|+-|++||+|||+++.|.|+.|-|++++||||| |||||||++|+|.++.++--
T Consensus 271 s~f~pY~~ycle~s~cm~y~rel~~~n~lFrafvtW~Ekqk~c~RqkL~D~l~kPmQRL-TKY~LLLkAVlK~t~d~~e~ 349 (846)
T KOG3521|consen 271 SWFRPYTNYCLEHSDCMKYIRELLKENELFRAFVTWAEKQKNCDRQKLIDTLSKPMQRL-TKYPLLLKAVLKVTTDERER 349 (846)
T ss_pred HhhhHHHHHHHHHhHHHHHHHHHhccchHHHHHHHHHHhhhhhhhHHHHHHhhhHHHHh-hhhHHHHHHHHhhCCCHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999 99999999999999999877
Q ss_pred hhhhhhh
Q psy11458 151 GTIEWFV 157 (159)
Q Consensus 151 ~~~~~~~ 157 (159)
-||+..+
T Consensus 350 Eai~aMi 356 (846)
T KOG3521|consen 350 EAISAMI 356 (846)
T ss_pred HHHHHHH
Confidence 7665443
No 3
>KOG3523|consensus
Probab=99.81 E-value=2.1e-20 Score=172.45 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=89.7
Q ss_pred hhHHHHHHHHH--HHhHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHhCCCCCCCCC
Q psy11458 41 GYWKICNEYCE--YQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQL 118 (159)
Q Consensus 41 ~Li~ih~~~~~--~v~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~~p~CrrL~L 118 (159)
.|.++..++.+ .+.+|+||+.+++. .++.+|..||+||.+..++|+.++.+|+.|.+.+.++|.+|.|+||+|
T Consensus 315 fl~dLE~r~e~ni~i~dicDiv~~ha~-----~~f~vYv~Y~tNQ~YQeRT~qrL~~~n~~F~e~l~rLE~~p~C~~Lpl 389 (695)
T KOG3523|consen 315 FLCDLEARLEENIFIDDICDIVEDHAA-----KHFSVYVKYCTNQVYQERTLQRLLTENPAFREVLERLESSPKCQGLPL 389 (695)
T ss_pred HHHHHHHHHHhCchhhHHHHHHHHhcc-----cccceeehhccchHHHHHHHHHHHhcChHHHHHHHHHhcCccccCCCc
Confidence 35555555543 35789999999985 457999999999999999999999999999999999999999999999
Q ss_pred CCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458 119 KDIIPTGMLREQTSYSSLHVQKILTFIF 146 (159)
Q Consensus 119 ~d~L~~PmQRI~TKYPLLL~~Ilk~~~~ 146 (159)
.+||++||||| ||+|||+++|+++++.
T Consensus 390 ~SFLiLPmQRI-TRL~LLl~nIl~rt~~ 416 (695)
T KOG3523|consen 390 RSFLILPMQRI-TRLPLLLDNILKRTEE 416 (695)
T ss_pred hhhhhchHHHH-HHHHHHHHHHHhhcCC
Confidence 99999999999 9999999999999864
No 4
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
Probab=99.78 E-value=4.9e-19 Score=136.06 Aligned_cols=98 Identities=23% Similarity=0.391 Sum_probs=88.9
Q ss_pred hhhHHHHHHHHHHH-----------hHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHH
Q psy11458 40 PGYWKICNEYCEYQ-----------NQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAE 108 (159)
Q Consensus 40 ~~Li~ih~~~~~~v-----------~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce 108 (159)
+.++++|..+...+ ..||++|+++- .+.++|..||.++..|.+.+.+ +++|+.|..|+++|+
T Consensus 47 ~~i~~~h~~~l~~l~~~~~~~~~~~~~i~~~f~~~~------~~~~~Y~~Y~~~~~~~~~~l~~-~~~~~~f~~~~~~~~ 119 (180)
T smart00325 47 EEIYEFHRDFLDELEERIEEWDDSPERIGDVFLKLE------EFFKIYSEYCSNHPDALELLKK-LKKNPRFQKFLKEIE 119 (180)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhh------HHHHHHHHHHHhHHHHHHHHHH-hhcChhHHHHHHHHh
Confidence 67888888887654 35899999872 5679999999999999999999 689999999999999
Q ss_pred hCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458 109 LNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI 145 (159)
Q Consensus 109 ~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~ 145 (159)
..+.|++++|.++|++|+||+ +||||||++|++++.
T Consensus 120 ~~~~~~~~~l~~~L~~PvqRl-~rY~lll~~l~k~t~ 155 (180)
T smart00325 120 SSPQCRRLTLESLLLKPVQRL-TKYPLLLKELLKHTP 155 (180)
T ss_pred CChhhccCCHHHHHhHHHHHh-ccHHHHHHHHHHhCC
Confidence 999999999999999999999 999999999999986
No 5
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Probab=99.76 E-value=2.5e-18 Score=132.25 Aligned_cols=98 Identities=19% Similarity=0.274 Sum_probs=89.3
Q ss_pred hhhHHHHHHHHHHHh-----------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHH
Q psy11458 40 PGYWKICNEYCEYQN-----------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAE 108 (159)
Q Consensus 40 ~~Li~ih~~~~~~v~-----------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce 108 (159)
+.++++|..+...++ .||++|+++.+ +..+|..||.++..|.+.+++.++.++.|.+|+++++
T Consensus 50 ~~i~~~h~~~l~~l~~~~~~~~~~~~~i~~~f~~~~~------~~~~Y~~Y~~~~~~~~~~l~~~~~~~~~f~~~~~~~~ 123 (181)
T cd00160 50 EEIYEFHRIFLKSLEERVEEWDKSGPRIGDVFLKLAP------FFKIYSEYCSNHPDALELLKKLKKFNKFFQEFLEKAE 123 (181)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHhhh------HHHHHHHHHhChHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 679999999976542 48999999873 6799999999999999999999889999999999999
Q ss_pred hCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458 109 LNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF 146 (159)
Q Consensus 109 ~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~ 146 (159)
. .+++++|.++|++|+||+ +||||||++|++++.-
T Consensus 124 ~--~~~~~~l~~~L~~PvQRl-~rY~lLL~~l~k~t~~ 158 (181)
T cd00160 124 S--ECGRLKLESLLLKPVQRL-TKYPLLLKELLKHTPD 158 (181)
T ss_pred H--hcccCCHHHHhhhhHHHh-chHHHHHHHHHHhCCC
Confidence 9 889999999999999999 9999999999999864
No 6
>KOG4305|consensus
Probab=99.74 E-value=5.8e-19 Score=170.49 Aligned_cols=109 Identities=15% Similarity=0.189 Sum_probs=91.6
Q ss_pred cccchhhhcccccCChhhHHH--HHHHHHHHhHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHH
Q psy11458 25 VSQNDIYAGNDCRWSPGYWKI--CNEYCEYQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNA 102 (159)
Q Consensus 25 ~~~~di~~~n~~~~~~~Li~i--h~~~~~~v~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~ 102 (159)
.+|.+|+++|.. .|-.+ -++....+++|||||++|.. +| +.|..||++|..|...++..++.|++|++
T Consensus 385 ~n~~~ii~ln~~----LL~aL~~r~k~~G~V~~IGdIll~~lp-----~~-~~yi~Y~a~q~~ak~lie~k~k~n~~Fa~ 454 (1029)
T KOG4305|consen 385 GNIEEIIQLNEK----LLKALRVRQKLSGVVEGIGDILLAWLP-----KA-EPYISYGANQAYAKALIEQKKKQNPRFAR 454 (1029)
T ss_pred hhHHHHHHHHHH----HHHHHHHhhccCCccchHHHHHHHHhh-----hh-hHHHHHHhhhHHHHHHHHHHhccCchHHH
Confidence 366777777732 12112 22223367899999999984 44 55999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhc
Q psy11458 103 FLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTF 144 (159)
Q Consensus 103 fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~ 144 (159)
|+++|++.|+||||.|..||..||||+ +||||||+.|||+|
T Consensus 455 fl~~~~~sp~~rkl~L~~FL~kp~sRl-~RYpLllr~ILk~T 495 (1029)
T KOG4305|consen 455 FLKECESSPESRKLDLVSFLTKPTSRL-QRYPLLLREILKHT 495 (1029)
T ss_pred HHHHHHhChhhhccchhhhhccccchh-heeeHHHHHHHhcC
Confidence 999999999999999999999999999 99999999999887
No 7
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=99.70 E-value=2.3e-17 Score=125.01 Aligned_cols=100 Identities=24% Similarity=0.332 Sum_probs=91.4
Q ss_pred hhhHHHHHHHHHHHhH----------HHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHh
Q psy11458 40 PGYWKICNEYCEYQNQ----------EYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAEL 109 (159)
Q Consensus 40 ~~Li~ih~~~~~~v~~----------IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~ 109 (159)
++++++|..++..+.. ||++|++ +. .+..+|..||.++..+...+++..+++..|..|+++++.
T Consensus 47 ~~l~~~h~~ll~~L~~~~~~~~~~~~i~~if~~-~~-----~~~~~Y~~Y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 120 (180)
T PF00621_consen 47 EELIEIHQQLLESLEERMKEWSNIQSIGDIFLK-FE-----PFLKVYISYCSNYPDALSLLEELRKKNSEFKKFLEEIEN 120 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHH-HT-----TGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHHHHHHhhhccchhhhhhhh-cc-----ccccceeccchheechhhhhhHHHhhccccccccccccc
Confidence 7899999999877654 9999998 53 467899999999999999999998889999999999999
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458 110 NPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF 146 (159)
Q Consensus 110 ~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~ 146 (159)
+|.++++++.++|..|+||| +||||||++|++++.-
T Consensus 121 ~~~~~~~~l~~~l~~Piqrl-~rY~lll~~llk~t~~ 156 (180)
T PF00621_consen 121 SPESKRLSLSSLLIKPIQRL-PRYPLLLKRLLKNTPP 156 (180)
T ss_dssp SHHCTTSTHHHHTTHHHHHH-HHHHHHHHHHHHTSST
T ss_pred cccccCCCHHHHHHHhhhHH-HHHHHHHHHHHHcCCC
Confidence 99999999999999999999 9999999999998873
No 8
>KOG2996|consensus
Probab=99.61 E-value=1.7e-15 Score=140.38 Aligned_cols=110 Identities=18% Similarity=0.146 Sum_probs=98.4
Q ss_pred hhhhcccccCChhhHHHHHHHHHHHh---------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHh
Q psy11458 29 DIYAGNDCRWSPGYWKICNEYCEYQN---------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSR 99 (159)
Q Consensus 29 di~~~n~~~~~~~Li~ih~~~~~~v~---------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~ 99 (159)
+|.+.|. ++|+++|..+...++ .+++||+.+- |+| -+|+.|||+-..|.+++.++.+.++.
T Consensus 237 ~ivFiNi----eel~klHt~ll~ei~~sv~v~~~qtl~qVFikyk-----er~-liYG~YCS~~e~a~k~ln~llktrEd 306 (865)
T KOG2996|consen 237 NIVFINI----EELNKLHTALLAEIEYSVKVAGGQTLYQVFIKYK-----ERL-LIYGKYCSNVESARKLLNELLKTRED 306 (865)
T ss_pred heeEecH----HHHHHHHHHHHHHhHHHhhCCCcccHHHHHHHHH-----HHH-hhhhhhhccchHHHHHHHHHHHHhHH
Confidence 4566674 899999999977653 4788999865 465 69999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccCCcc
Q psy11458 100 LNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIFPWR 149 (159)
Q Consensus 100 F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~~~~ 149 (159)
|+.-+.+|.....-.+..|+|+|+.||||+ +||||||++++|+++.+--
T Consensus 307 v~~kleEct~r~nngkF~l~DLL~VPmQRv-lKYhLLLkEL~kht~~a~e 355 (865)
T KOG2996|consen 307 VSRKLEECTARANNGKFTLRDLLVVPMQRV-LKYHLLLKELVKHTDEASE 355 (865)
T ss_pred HHHHHHHHHhhhcCCceeeceeeeeeHHHH-HHHHHHHHHHHHhcccCCh
Confidence 999999999999988999999999999999 9999999999999988753
No 9
>KOG4424|consensus
Probab=99.52 E-value=4.8e-14 Score=130.09 Aligned_cols=84 Identities=15% Similarity=0.216 Sum_probs=79.2
Q ss_pred HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhH
Q psy11458 55 QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYS 134 (159)
Q Consensus 55 ~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYP 134 (159)
.|||||.... .|.++|+.|..|+..|+++++.+.++++.|+.+|++.|++|.|.+|.|+..++.|+||| .||-
T Consensus 133 ~Iadv~qKlA------PFLKmYseY~knydrA~~L~~~lt~rsp~F~~vl~~Iek~~~cg~l~LqhhMiePVQRI-PRYe 205 (623)
T KOG4424|consen 133 IIADVFQKLA------PFLKMYSEYAKNYDRALKLFQTLTSRSPQFRKVVEEIEKQPECGGLKLQHHMIEPVQRV-PRYE 205 (623)
T ss_pred HHHHHHHHhh------hHHHHHHHHHhcchhHHHHHHHHHhhChHHHHHHHHHhhchhcCCccchhheechhhhh-hHHH
Confidence 4999999875 68999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HhHHHHHhhcc
Q psy11458 135 SLHVQKILTFI 145 (159)
Q Consensus 135 LLL~~Ilk~~~ 145 (159)
|||+..++..+
T Consensus 206 LLLk~yl~~lp 216 (623)
T KOG4424|consen 206 LLLQDYLLYLP 216 (623)
T ss_pred HHHHHHHHhCC
Confidence 99999876553
No 10
>KOG3519|consensus
Probab=98.87 E-value=2.5e-09 Score=101.97 Aligned_cols=112 Identities=18% Similarity=0.239 Sum_probs=93.0
Q ss_pred ecccchhhhcccccCChhhHHHHHHHHHHH-------------hHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHH
Q psy11458 24 IVSQNDIYAGNDCRWSPGYWKICNEYCEYQ-------------NQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESL 90 (159)
Q Consensus 24 ~~~~~di~~~n~~~~~~~Li~ih~~~~~~v-------------~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~l 90 (159)
-+++-++|++|. +++..+|.+|...+ ..||.+|++++++ | .+|.+||.++..+...+
T Consensus 374 ~~~~~~~~f~ni----~~i~~f~~~fl~~L~~~~~~~~~~~~~~~ig~~fL~~~~~-----f-~~ys~yc~~h~~~~~~l 443 (756)
T KOG3519|consen 374 SVNQLDLLFGNI----EDILRFQKEFLKTLEQQINPELIPPSLSEIGPVFLEQLDV-----F-KIYSEYCNNHPKAQKKL 443 (756)
T ss_pred cHHHHHHHccCH----HHHHHHHHHHHHHHHHhcchhhcchhHhHHHHHHHHhccc-----c-eeechhhhccchHHHHH
Confidence 356778889996 57788888885543 3589999999853 4 56777999999999999
Q ss_pred HHHHhcCHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccCC
Q psy11458 91 RERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIFP 147 (159)
Q Consensus 91 kel~kkn~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~~ 147 (159)
... +++++++.|+..|...-+=-+.+|.++|++|.||+ .||||||.++++-+.-+
T Consensus 444 ~~~-~~~~~~~~~l~~~~~~~~~~~~~L~s~l~~pvqri-~kYPLll~elld~t~~~ 498 (756)
T KOG3519|consen 444 SKL-KKKKKVKEFLEACNLLQQHSNSSLSSFLLKPVQRI-CKYPLLLNELLDSTPLE 498 (756)
T ss_pred HHH-hhhhhhhhhhhhhhhhhccccCCchhhhccHHHHh-ccCchhhhhhhhhccCC
Confidence 976 79999999999997765544599999999999999 99999999999988654
No 11
>KOG3518|consensus
Probab=98.78 E-value=1.2e-08 Score=90.92 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=66.9
Q ss_pred HHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHH
Q psy11458 56 EYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSS 135 (159)
Q Consensus 56 IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPL 135 (159)
|+.-|++- ++.| ..|.+||.|+...+.+|-++ .+|+-++.++++-+. ..-..|+|..+|++|+||| .||.|
T Consensus 196 ia~cfve~-----s~ef-e~yieyctny~rmmatl~~~-~q~~ilaka~qerq~-al~hsl~l~ayllkpvqri-lkyhl 266 (521)
T KOG3518|consen 196 IAECFVEK-----SEEF-EDYIEYCTNYHRMMATLTEC-MQNKILAKAFQERQE-ALKHSLPLGAYLLKPVQRI-LKYHL 266 (521)
T ss_pred HHHHHHhc-----chhH-HHHHHHHhhhHHHHHHHHHH-HHhHHHHHHHHHHHH-HHhcccchhHHHHHHHHHH-HHHHH
Confidence 45555542 2454 78999999999999999987 578888888876443 2335799999999999999 99999
Q ss_pred hHHHHHhhc---cCCc
Q psy11458 136 LHVQKILTF---IFPW 148 (159)
Q Consensus 136 LL~~Ilk~~---~~~~ 148 (159)
+|++|.++- |-|-
T Consensus 267 fle~i~k~l~~~thpe 282 (521)
T KOG3518|consen 267 FLEEIEKHLDKDTHPE 282 (521)
T ss_pred HHHHHHhcCCCCCChH
Confidence 999999875 6664
No 12
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=98.58 E-value=1.7e-08 Score=97.51 Aligned_cols=120 Identities=18% Similarity=0.154 Sum_probs=95.4
Q ss_pred ccchhhhcccccCChhhHHHH---HHHHHHHhHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHH
Q psy11458 26 SQNDIYAGNDCRWSPGYWKIC---NEYCEYQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNA 102 (159)
Q Consensus 26 ~~~di~~~n~~~~~~~Li~ih---~~~~~~v~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~ 102 (159)
+.++|++.|.. +.+.. +.+..++..||||||++.+ +++.+..|-++|..|.-.+......|+.|+.
T Consensus 535 ~i~~i~avn~k-----~~~AL~~rQ~lsPiv~~I~DifL~~vP------~Fepfiky~a~~~yaky~~erekS~np~fa~ 603 (1175)
T COG5422 535 NINEIYAVNSK-----LLKALTNRQCLSPIVNGIADIFLDYVP------KFEPFIKYGASQPYAKYEFEREKSVNPNFAR 603 (1175)
T ss_pred HHHHHHHhhHH-----HHHHHhhcccccccccchHHHHHhhhh------hhhHHHHhhcccchhheeeeeccccCcchhh
Confidence 45788888842 33332 2234567899999999984 4688999999999999999888889999999
Q ss_pred HHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC--------Ccchhhhhhhh
Q psy11458 103 FLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF--------PWRLGTIEWFV 157 (159)
Q Consensus 103 fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~--------~~~~~~~~~~~ 157 (159)
|....+.-...+++.+..+|-.|.-|+ .|||||++.+++=+.- |-|.-.++-|.
T Consensus 604 Fd~~v~rl~~s~k~~ld~yLtk~~tr~-~Ry~lL~e~vlkftd~d~~D~e~i~kv~d~~reFl 665 (1175)
T COG5422 604 FDHEVERLDESRKLELDGYLTKPTTRL-ARYPLLLEEVLKFTDPDNPDTEDIPKVIDMLREFL 665 (1175)
T ss_pred hhHHHHhcchhhhhcccceecCCcccc-hhhHHHHhhhcccCCCCCcchhHhHHHHHHHHHHH
Confidence 999999777778999999999999999 9999999998765432 34555555553
No 13
>KOG3522|consensus
Probab=98.55 E-value=2e-07 Score=89.76 Aligned_cols=97 Identities=19% Similarity=0.221 Sum_probs=80.7
Q ss_pred eeeecccchhhhcccccCChhhHHHHHHHHHHH----------hHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHH
Q psy11458 21 YIDIVSQNDIYAGNDCRWSPGYWKICNEYCEYQ----------NQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESL 90 (159)
Q Consensus 21 ~~~~~~~~di~~~n~~~~~~~Li~ih~~~~~~v----------~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~l 90 (159)
.||=+--.+||.. .|++.++|+.|.+.+ +++|+.++++|+. +....+|..||+|...|...+
T Consensus 36 l~~~~~~~eif~~-----i~ell~~he~fl~~l~s~~~~w~~qq~vga~~v~~fSk---~~v~~~Y~~y~nn~~~A~~~l 107 (925)
T KOG3522|consen 36 LIDPRDVDEIFQN-----IPELLEIHEDFLEQLCSRDQQWDEQQKVGASFVYSFSK---TAVLAAYSKYVNNFKRAKCAL 107 (925)
T ss_pred ccCCchHHHHHHh-----hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhH---HHHHHHHHHHHhchhHHHHHH
Confidence 3444444455543 389999999997765 4699999999976 467899999999999999999
Q ss_pred HHHHhcCHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458 91 RERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF 146 (159)
Q Consensus 91 kel~kkn~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~ 146 (159)
+.. +.+.|..|++ ++++| |+ ++|-||++ ++|++.+
T Consensus 108 ~~~--~rpaf~~Fl~---------------l~~kP--r~-P~y~lll~-mlkhtp~ 142 (925)
T KOG3522|consen 108 RNK--KRPAFSKFLE---------------LMIKP--RF-PRYELLLQ-MLKHTPL 142 (925)
T ss_pred HHh--cchHHHHHHH---------------HHhcc--CC-chHHHHHH-HhhcCCc
Confidence 975 4999999998 88999 99 99999999 9999854
No 14
>KOG0689|consensus
Probab=98.41 E-value=1.7e-07 Score=85.25 Aligned_cols=108 Identities=15% Similarity=0.087 Sum_probs=75.7
Q ss_pred eecccchhhhcccccCChhhHHHHHHH-HHH-------HhHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHH
Q psy11458 23 DIVSQNDIYAGNDCRWSPGYWKICNEY-CEY-------QNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERR 94 (159)
Q Consensus 23 ~~~~~~di~~~n~~~~~~~Li~ih~~~-~~~-------v~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~ 94 (159)
+++...+|.++|. .++++.|... ... ....|++|+++.. ++--.|..||.|.... +++..
T Consensus 100 ~lrg~~~iifgni----~~i~~~h~~~fl~e~e~~~r~~~~~~~~f~kh~~-----k~~~~y~~y~q~kp~s-~~~~~-- 167 (448)
T KOG0689|consen 100 DLRGKDKIIFGNI----KEIYEFHKKEFLPELERCERDPLELGQAFAKHER-----KNSVLYVTYCQNKPKS-DYLLA-- 167 (448)
T ss_pred hccCCceeeechH----HHHHHhhcccCcchHHHhhhCHHHHHHHHHHHHH-----HhhhhhhhhhcCCCCC-cccce--
Confidence 4566788888885 4566777665 111 2468999999874 3322899999999887 23322
Q ss_pred hcCHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458 95 RKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF 146 (159)
Q Consensus 95 kkn~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~ 146 (159)
.-.+..|.+.+.+.-. .+++|.|+|++|+||+ +||+|||+++++-+.-
T Consensus 168 --~~~~~~~f~~~~~~~~-~~l~l~~~l~kPiQR~-~kYqlLL~~~~k~~~~ 215 (448)
T KOG0689|consen 168 --EYDNEAFFQEYQTQLG-HKLDLSSYLIKPVQRI-MKYQLLLQDFLKFCEK 215 (448)
T ss_pred --ecccchhhHHHhhhcc-cccccchhhhhhhHHH-HHHHHHHHHHHHHhhh
Confidence 2233445555554322 4899999999999999 9999999999887643
No 15
>KOG4240|consensus
Probab=98.27 E-value=1.1e-06 Score=86.21 Aligned_cols=102 Identities=17% Similarity=0.212 Sum_probs=76.7
Q ss_pred ecccchhhhcccccCChhhHHHHHHHHHH--------HhHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHh
Q psy11458 24 IVSQNDIYAGNDCRWSPGYWKICNEYCEY--------QNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRR 95 (159)
Q Consensus 24 ~~~~~di~~~n~~~~~~~Li~ih~~~~~~--------v~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~k 95 (159)
+.|-.+|+.+|. +++.+.|+..+-. .+.+|+-|++|.+ .| ++|..||-|...+..+.+.. .
T Consensus 673 ~Lnk~~~ifgnm----eeiy~fhn~~~L~eLe~y~~~pE~Vg~~fle~~d-----~f-qly~~Yc~nke~S~ql~~~~-a 741 (1025)
T KOG4240|consen 673 LLNKKEIIFGNM----EEIYEFHNDIFLSELEKYEQLPEDVGHCFLERAD-----DF-QLYAKYCQNKELSNQLIRLH-A 741 (1025)
T ss_pred ccchHHHHHhhH----HHHHHHHhhHHHHHhhhhccCHHHHHHHHHHHHH-----HH-HHHHHHHhCCcchHHHHHhc-c
Confidence 445678899995 6788899988532 3579999999873 45 99999999999888777743 3
Q ss_pred cCHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHh
Q psy11458 96 KDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKIL 142 (159)
Q Consensus 96 kn~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk 142 (159)
.-+-| .+|+..-.- .+.+.+.|++|+||| |||-|||+.+++
T Consensus 742 ~~~ff----~e~qr~~~l-~l~~~S~l~kpvqri-tkYqlllkell~ 782 (1025)
T KOG4240|consen 742 GCSFF----QEIQRRHGL-ELSISSYLIKPVQRI-TKYQLLLKELLK 782 (1025)
T ss_pred ccccc----HHHHHHhhh-hhhhHHHHhHHHHHH-HHHHHHHHHHHH
Confidence 32233 344443221 338899999999999 999999999987
No 16
>KOG3524|consensus
Probab=98.12 E-value=4.4e-06 Score=79.64 Aligned_cols=98 Identities=18% Similarity=0.147 Sum_probs=79.1
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHhCCCCCCCCCC
Q psy11458 40 PGYWKICNEYCEYQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLK 119 (159)
Q Consensus 40 ~~Li~ih~~~~~~v~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~~p~CrrL~L~ 119 (159)
++..++|.+.-+.+.+...++.+- .+.+..+|..|..-...-.+.++...+++|+|.+|++.=++.|.|.|++|.
T Consensus 438 l~I~~vh~k~~D~l~~l~~nw~e~-----k~el~kayppyvnffet~ke~~~~cdre~prfhaflKinq~kpecgRq~l~ 512 (850)
T KOG3524|consen 438 LLIVVVHKKNDDKLLDLAQNWIEA-----KEELKKAYPPYVNFFETIKELFDKCDRENPRFHAFLKINQSKPECGRQKLT 512 (850)
T ss_pred hhhhhhhccchHHHHHHHHhhHHH-----HHHHHHhccchhhHHHHhHHHHHHHhccchHHHHHHHccccchhhhhhccc
Confidence 345555666555554444443332 256778888888888888889998899999999999999999999999999
Q ss_pred CcccchhhhhhhhhHHhHHHHHhh
Q psy11458 120 DIIPTGMLREQTSYSSLHVQKILT 143 (159)
Q Consensus 120 d~L~~PmQRI~TKYPLLL~~Ilk~ 143 (159)
|+++.|+||+ ...-|||..+.|.
T Consensus 513 dlmirpvqrl-psvilllndl~k~ 535 (850)
T KOG3524|consen 513 DLMIRPVQRL-PSVILLLNDMAKK 535 (850)
T ss_pred chhccchhhh-hHHHHHHHHHHhh
Confidence 9999999999 9999999999883
No 17
>KOG2070|consensus
Probab=97.70 E-value=9.8e-05 Score=68.62 Aligned_cols=94 Identities=11% Similarity=0.111 Sum_probs=71.2
Q ss_pred hhhHHHHHHHHHHH----------hHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHh
Q psy11458 40 PGYWKICNEYCEYQ----------NQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAEL 109 (159)
Q Consensus 40 ~~Li~ih~~~~~~v----------~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~ 109 (159)
++++..|+-+++.+ .++|-.|+.-. +.|+.+|..||.|+..|++.|++. ..++..|++.-..
T Consensus 150 eeI~t~~qdL~~qlEec~~~~~~q~RVGg~fln~a-----p~mkt~~~aYcanHP~AV~VL~k~---~dELek~me~Qga 221 (661)
T KOG2070|consen 150 EEICTFQQDLVQQLEECTKLPEAQQRVGGCFLNLA-----PQMKTLYLAYCANHPSAVNVLTKH---SDELEKFMETQGA 221 (661)
T ss_pred HHhHhHHHHHHHHHHHhhcCchhhhhhhhHHHhhh-----HHHHHHHHHHHhcCchhhhHHHHh---HHHHHHHHHhcCC
Confidence 55666666666554 26899998754 589999999999999999999964 5567777765433
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhh
Q psy11458 110 NPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILT 143 (159)
Q Consensus 110 ~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~ 143 (159)
. .-+=|-|.-=|.+|..|+ -|||-||+.+=++
T Consensus 222 s-spg~lvLttgLSkPfrrl-dkY~~lLQELERh 253 (661)
T KOG2070|consen 222 S-SPGILVLTTGLSKPFRRL-DKYPTLLQELERH 253 (661)
T ss_pred C-CCCeEEEecccchHHHHH-HHHHHHHHHHHHh
Confidence 2 224566777789999999 9999999987544
No 18
>KOG3531|consensus
Probab=97.04 E-value=0.00071 Score=66.01 Aligned_cols=96 Identities=17% Similarity=0.184 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHh------------------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHH
Q psy11458 42 YWKICNEYCEYQN------------------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAF 103 (159)
Q Consensus 42 Li~ih~~~~~~v~------------------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~f 103 (159)
|.+-|+.+...++ +||||+|+...+ +++|.+|-..+.+++..+....+...+|.++
T Consensus 584 l~k~h~~fLk~ieeria~weGrsnani~~~~~igDVmLk~m~~------l~i~~~~~q~h~~~l~~~t~~~k~~~r~~~v 657 (1036)
T KOG3531|consen 584 LTKFHEGFLKEIEERIALWEGRSNANIVIEQRIGDVMLKNMRS------LKITTTTTQRHAETLTTLTTTSKVLTRLEAV 657 (1036)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCCCceeeeeccCCcchhhhhc------cchhhhhHHhHHHHHHHHhhcchhhhhHHhh
Confidence 8888988876542 489999987632 6799999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458 104 LTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI 145 (159)
Q Consensus 104 l~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~ 145 (159)
.++.|....| -|.+..||++|++|+ .-|-|+|+.+..+|.
T Consensus 658 ~kefelqkvc-yLP~~~fllkpL~rl-lhyq~~LeRLc~~~~ 697 (1036)
T KOG3531|consen 658 YKEFELQKVC-YLPLNTFLLKPLSRL-LHYQLALERLCGHYS 697 (1036)
T ss_pred hccHHhhhcc-ccccchhhhccccHH-HHHHHHHHHhhcccC
Confidence 9999999999 799999999999999 999999999999883
No 19
>KOG3524|consensus
Probab=81.57 E-value=1.1 Score=43.74 Aligned_cols=97 Identities=7% Similarity=-0.024 Sum_probs=65.1
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHhCCCCCCCCC
Q psy11458 39 SPGYWKICNEYCEYQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQL 118 (159)
Q Consensus 39 ~~~Li~ih~~~~~~v~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~~p~CrrL~L 118 (159)
.+.+.++|..+-+. ..++++.+..+-... ...+....||..+ ...+-.-++.|+.+-+|.+.=..++.||+-+.
T Consensus 448 ~D~l~~l~~nw~e~-k~el~kayppyvnff--et~ke~~~~cdre---~prfhaflKinq~kpecgRq~l~dlmirpvqr 521 (850)
T KOG3524|consen 448 DDKLLDLAQNWIEA-KEELKKAYPPYVNFF--ETIKELFDKCDRE---NPRFHAFLKINQSKPECGRQKLTDLMIRPVQR 521 (850)
T ss_pred hHHHHHHHHhhHHH-HHHHHHhccchhhHH--HHhHHHHHHHhcc---chHHHHHHHccccchhhhhhcccchhccchhh
Confidence 35566666666443 367777666553210 1223345566544 44556666788999999999999999999999
Q ss_pred CCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458 119 KDIIPTGMLREQTSYSSLHVQKILTFI 145 (159)
Q Consensus 119 ~d~L~~PmQRI~TKYPLLL~~Ilk~~~ 145 (159)
-..+++|+||| .| +..+-+|+.+
T Consensus 522 lpsvilllndl-~k---~s~N~dk~~l 544 (850)
T KOG3524|consen 522 LPSVILLLNDM-AK---KSDNKDKNNL 544 (850)
T ss_pred hhHHHHHHHHH-Hh---hccCcchhhH
Confidence 99999999999 88 4444445443
No 20
>KOG0584|consensus
Probab=48.10 E-value=17 Score=35.22 Aligned_cols=84 Identities=15% Similarity=0.242 Sum_probs=57.3
Q ss_pred cccccCChhhHHHHHHHHHHHh--HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHH----------HhcCHhH
Q psy11458 33 GNDCRWSPGYWKICNEYCEYQN--QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRER----------RRKDSRL 100 (159)
Q Consensus 33 ~n~~~~~~~Li~ih~~~~~~v~--~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel----------~kkn~~F 100 (159)
|+-.||-|++++ +.++|.|+ ..|--+|+|..++ | -||.++..|. .+|.. .=++|..
T Consensus 206 GTPEFMAPEmYE--E~YnE~VDVYaFGMCmLEMvT~e--------Y-PYsEC~n~AQ-IYKKV~SGiKP~sl~kV~dPev 273 (632)
T KOG0584|consen 206 GTPEFMAPEMYE--ENYNELVDVYAFGMCMLEMVTSE--------Y-PYSECTNPAQ-IYKKVTSGIKPAALSKVKDPEV 273 (632)
T ss_pred cCccccChHHHh--hhcchhhhhhhhhHHHHHHHhcc--------C-ChhhhCCHHH-HHHHHHcCCCHHHhhccCCHHH
Confidence 345788899988 77777765 5799999998543 2 2444444432 33321 1379999
Q ss_pred HHHHHHHHhCCCCCCCCCCCcccchhhhh
Q psy11458 101 NAFLTEAELNPLCRRLQLKDIIPTGMLRE 129 (159)
Q Consensus 101 ~~fl~~ce~~p~CrrL~L~d~L~~PmQRI 129 (159)
++||.+|-.. .-.|+.-.++|.-|.=+.
T Consensus 274 r~fIekCl~~-~~~R~sa~eLL~d~Ff~~ 301 (632)
T KOG0584|consen 274 REFIEKCLAT-KSERLSAKELLKDPFFDE 301 (632)
T ss_pred HHHHHHHhcC-chhccCHHHHhhChhhcc
Confidence 9999999887 556888777777665443
No 21
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=44.73 E-value=25 Score=23.66 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=33.9
Q ss_pred HhcCHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhh
Q psy11458 94 RRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILT 143 (159)
Q Consensus 94 ~kkn~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~ 143 (159)
.+.+|.|...-+-..+||. .|...+|+|....|=|++.|-.|
T Consensus 4 Lr~~Pqf~~lR~~vq~NP~--------lL~~lLqql~~~nP~l~q~I~~n 45 (59)
T PF09280_consen 4 LRNNPQFQQLRQLVQQNPQ--------LLPPLLQQLGQSNPQLLQLIQQN 45 (59)
T ss_dssp GTTSHHHHHHHHHHHC-GG--------GHHHHHHHHHCCSHHHHHHHHHT
T ss_pred HHcChHHHHHHHHHHHCHH--------HHHHHHHHHhccCHHHHHHHHHC
Confidence 3678999999889999984 67788899988899999887654
No 22
>COG0789 SoxR Predicted transcriptional regulators [Transcription]
Probab=41.88 E-value=5.5 Score=28.93 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=16.4
Q ss_pred CCC-cccCcccccccCCcceeee
Q psy11458 3 PPP-VVNGGRRSYSESDYTYIDI 24 (159)
Q Consensus 3 ~~~-~~~~~~~~~~~~~~~~~~~ 24 (159)
||| ..+||.|-|++.|-..+++
T Consensus 27 ~p~~~~~~gyR~Ys~~dl~~l~~ 49 (124)
T COG0789 27 SPERRDEGGYRYYTPEDLELLQI 49 (124)
T ss_pred CCcccCCCCceecCHHHHHHHHH
Confidence 444 4558999999999776663
No 23
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=39.87 E-value=6.3 Score=31.14 Aligned_cols=38 Identities=21% Similarity=0.417 Sum_probs=24.8
Q ss_pred CCCCcccchhhhhhhhhHHhHHHHHhhc--------cCCcchhhhhhhhh
Q psy11458 117 QLKDIIPTGMLREQTSYSSLHVQKILTF--------IFPWRLGTIEWFVE 158 (159)
Q Consensus 117 ~L~d~L~~PmQRI~TKYPLLL~~Ilk~~--------~~~~~~~~~~~~~~ 158 (159)
++.|=++.-+..| +||-+ .|=|.. ++|..||++.|.|+
T Consensus 92 k~eeev~~~lK~L--~YP~~--~isKS~L~a~gs~hsWP~lL~~L~WLv~ 137 (157)
T PF03801_consen 92 KFEEEVPFLLKAL--GYPFA--TISKSSLQAPGSPHSWPHLLGALHWLVE 137 (157)
T ss_dssp THHHHHHHHHHHT--T-SS------HHHHHSTTSTTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh--CCCcc--ccCHHHccCCCCcccHHHHHHHHHHHHH
Confidence 4455666677777 99984 232322 68999999999986
No 24
>PF01858 RB_A: Retinoblastoma-associated protein A domain; InterPro: IPR002720 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation. They form a complex with adenovirus E1A and Simian virus 40 (SV40) large T antigen, and may bind and modulate the function of certain cellular proteins with which T and E1A compete for pocket binding. The proteins may act as tumor suppressors, and are potent inhibitors of E2F-mediated trans-activation. This domain has the cyclin fold []. The crystal structure of the Rb pocket bound to a nine-residue E7 peptide containing the LxCxE motif, shared by other Rb-binding viral and cellular proteins, shows that the LxCxE peptide binds a highly conserved groove on the B-box portion of the pocket; the A-box portion appears to be required for the stable folding of the B box (see IPR002719 from INTERPRO). Also highly conserved is the extensive A-B interface, suggesting that it may be an additional protein-binding site. The A and B boxes each contain the cyclin-fold structural motif, with the LxCxE-binding site on the B-box cyclin fold being similar to a Cdk2-binding site of cyclin A and to a TBP-binding site of TFIIB []. The A and B boxes are found at the C-terminal end of the protein; the A-box is on N-terminal side of the B-box.; GO: 0051726 regulation of cell cycle, 0005634 nucleus; PDB: 1O9K_A 3POM_A 1GH6_B 1N4M_A 4ELL_B 1AD6_A 1GUX_A 2R7G_C 4ELJ_A.
Probab=39.07 E-value=87 Score=25.50 Aligned_cols=27 Identities=11% Similarity=0.059 Sum_probs=14.1
Q ss_pred ChhhHHHH--------HHHHHHHhHHHHHHHhhch
Q psy11458 39 SPGYWKIC--------NEYCEYQNQEYQMNMEYFD 65 (159)
Q Consensus 39 ~~~Li~ih--------~~~~~~v~~IGDIll~~F~ 65 (159)
++.|.+++ ......++.+|+.+.+.+.
T Consensus 25 S~~L~~~~~~c~~~p~~~i~~rv~~l~~~~~~~~~ 59 (194)
T PF01858_consen 25 SEELLRIFKSCSRDPTESILKRVKQLLEKFCQKYT 59 (194)
T ss_dssp -HHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 34555555 3334445566666666554
No 25
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=33.29 E-value=80 Score=26.74 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=33.6
Q ss_pred HHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHhCC
Q psy11458 72 FQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNP 111 (159)
Q Consensus 72 ~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~~p 111 (159)
|..++..--++...+++.+.+..+=+|-|+.|++||.++-
T Consensus 50 ~g~mf~~i~~s~~Eile~llk~i~Idp~fKef~e~ike~d 89 (220)
T COG4359 50 FGRMFGSIHSSLEEILEFLLKDIKIDPGFKEFVEWIKEHD 89 (220)
T ss_pred HHHHHHhcCCCHHHHHHHHHhhcccCccHHHHHHHHHHcC
Confidence 4456667778889999999987789999999999998874
No 26
>KOG1010|consensus
Probab=33.10 E-value=1.3e+02 Score=30.50 Aligned_cols=109 Identities=17% Similarity=0.089 Sum_probs=66.0
Q ss_pred hhhcccccCChhhHHHH--------HHHHHHHhHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHH
Q psy11458 30 IYAGNDCRWSPGYWKIC--------NEYCEYQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLN 101 (159)
Q Consensus 30 i~~~n~~~~~~~Li~ih--------~~~~~~v~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~ 101 (159)
|..+...--++.|..+. +.....++.|+.++.+.|. ..++.-=+++..|...+++.. .-|-
T Consensus 413 ~i~g~~~~psdkLe~~~~tc~r~p~e~Il~r~~~i~e~~~q~f~--------~~~~~g~~~~e~~~~r~k~a~---~LYy 481 (920)
T KOG1010|consen 413 ILNGLKKEPSDKLEQYLNTCSRDPTESILKRLKEIFEIFEQKFS--------AAEGSGNSCIEIASQRFKLAE---RLYY 481 (920)
T ss_pred HHhccccCCcHHHHHHHhhcccChHHHHHHHHHHHHHHHHHHhh--------hhccCCccchHHHHHHHHHHH---HHHH
Confidence 44444444456677776 5555666778888877764 344434445556665666542 2344
Q ss_pred HHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHh---HHHHHhhc----cCCcchh
Q psy11458 102 AFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSL---HVQKILTF----IFPWRLG 151 (159)
Q Consensus 102 ~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLL---L~~Ilk~~----~~~~~~~ 151 (159)
.+++..-. +.-+++.-.|+.-+=.|++ -.-.|| ++-++..| .|||+|-
T Consensus 482 kvLE~il~-aE~~rl~~~dl~~LL~q~~-Fh~sLlACclElVL~ty~~~l~FPwvle 536 (920)
T KOG1010|consen 482 KVLEKILK-AELKRLPDMDLSKLLEQEI-FHRSLLACCLELVLATYKTDLSFPWVLE 536 (920)
T ss_pred HHHHHHHH-HHHHhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCCchhhh
Confidence 44443332 3346777777777778888 555554 56677777 8999985
No 27
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=27.87 E-value=3.2e+02 Score=21.94 Aligned_cols=79 Identities=10% Similarity=0.070 Sum_probs=55.2
Q ss_pred cchhhhcccccCChhhHHHHHHHHHHHhHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHH
Q psy11458 27 QNDIYAGNDCRWSPGYWKICNEYCEYQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTE 106 (159)
Q Consensus 27 ~~di~~~n~~~~~~~Li~ih~~~~~~v~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ 106 (159)
..|+|..+. ++.++-+..+...+..+.+.++.-+.+........+-..+++......+.++.+.++--.+..+-..
T Consensus 49 ~~d~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~V~~Pl~~~~~~~~~~~k~I~KR~~KllDYdr~~~~ 124 (195)
T cd07589 49 VLDLYPSNH----PRLESKWERFRRVVRGISSKALPEFKSRVRKLVIEPLSSLLKLFSGPQKLIQKRYDKLLDYERYKEK 124 (195)
T ss_pred HHHhccCCC----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccHHHHHHH
Confidence 345555432 4455556677777888888877776665556677788888988899899999877776677766665
Q ss_pred HHh
Q psy11458 107 AEL 109 (159)
Q Consensus 107 ce~ 109 (159)
.++
T Consensus 125 ~~k 127 (195)
T cd07589 125 KER 127 (195)
T ss_pred HHh
Confidence 544
No 28
>PF10945 DUF2629: Protein of unknown function (DUF2629); InterPro: IPR024487 Some members in this family of proteins are annotated as YhjR however currently no function is known.
Probab=25.79 E-value=13 Score=24.05 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=20.8
Q ss_pred ccccccCCcceeeecccchhhhcccccCChhhHH
Q psy11458 11 RRSYSESDYTYIDIVSQNDIYAGNDCRWSPGYWK 44 (159)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~di~~~n~~~~~~~Li~ 44 (159)
++-||-.+..|+||+....+=.. ..|| |.|-+
T Consensus 10 ~~~fslp~~~Y~DIsr~e~l~~~-~~RW-PLLaE 41 (44)
T PF10945_consen 10 SQAFSLPDINYIDISREERLNQA-LQRW-PLLAE 41 (44)
T ss_pred HHHhCCCCccHHHHHHHHHHHHH-HHHC-hhHHH
Confidence 35678888899999877655333 3456 54444
No 29
>cd04764 HTH_MlrA-like_sg1 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 1). The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA-like proteins in this group appear to lack the long dimerization helix seen in the N-terminal domains of typical MerR-like proteins.
Probab=25.78 E-value=23 Score=23.17 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=12.8
Q ss_pred CCCcccCcccccccCCc
Q psy11458 3 PPPVVNGGRRSYSESDY 19 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (159)
++|...||+|-|+++|-
T Consensus 27 ~~~~~~~g~R~y~~~~l 43 (67)
T cd04764 27 YIPRTENGRRYYTDEDI 43 (67)
T ss_pred CCCCCCCCceeeCHHHH
Confidence 45667889999988764
No 30
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.41 E-value=28 Score=25.61 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=15.3
Q ss_pred CCCcccCcccccccCCcceee
Q psy11458 3 PPPVVNGGRRSYSESDYTYID 23 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (159)
+||..+||.|.|+++|-..|.
T Consensus 27 ~p~~~~~~yR~Y~~~d~~~l~ 47 (116)
T cd04769 27 PSPKRSGNYRVYDAQHVECLR 47 (116)
T ss_pred CCCCCCCCceeeCHHHHHHHH
Confidence 566677799999998755443
No 31
>cd04763 HTH_MlrA-like Helix-Turn-Helix DNA binding domain of MlrA-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A) and related proteins, N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA-like proteins in this group appear to lack the long dimerization helix seen
Probab=24.34 E-value=27 Score=22.94 Aligned_cols=17 Identities=29% Similarity=0.710 Sum_probs=12.3
Q ss_pred CCCcccCcccccccCCc
Q psy11458 3 PPPVVNGGRRSYSESDY 19 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (159)
+|+...||+|-|+++|-
T Consensus 28 ~~~r~~~g~R~yt~~di 44 (68)
T cd04763 28 KPQRSDGGHRLFNDADI 44 (68)
T ss_pred CCCcCCCCCcccCHHHH
Confidence 34556789999998763
No 32
>KOG0037|consensus
Probab=24.14 E-value=83 Score=26.79 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=43.2
Q ss_pred eeeecccchhhhcccc--cCChhhHHHHHHHHH----HHhHHHHHHHhhchhh-hhHHHHHhHhhhhccHHHHHHHHHHH
Q psy11458 21 YIDIVSQNDIYAGNDC--RWSPGYWKICNEYCE----YQNQEYQMNMEYFDGA-AGEAFQRAAATFCSRQQIALESLRER 93 (159)
Q Consensus 21 ~~~~~~~~di~~~n~~--~~~~~Li~ih~~~~~----~v~~IGDIll~~F~g~-~ge~~~~~Y~~yCsnq~~A~~~lkel 93 (159)
+=-|.+|..||...|- +-.=+-.++++.+.. +-.++-++++..|+.. .|+-...-|...|-.-..-.+.++++
T Consensus 120 w~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr~~ 199 (221)
T KOG0037|consen 120 WKYINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAFRRR 199 (221)
T ss_pred HHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHHHHHHh
Confidence 4458899999998853 111112334444432 2346778888888754 55555566777776655555555543
No 33
>COG3512 CRISPR-associated protein, Cas2 homolog [Defense mechanisms]
Probab=23.36 E-value=2.5e+02 Score=21.52 Aligned_cols=89 Identities=12% Similarity=-0.017 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHhCCCCCCCCCCCccc
Q psy11458 44 KICNEYCEYQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIP 123 (159)
Q Consensus 44 ~ih~~~~~~v~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~~p~CrrL~L~d~L~ 123 (159)
+.-+.|...+-+-|=.+++ .++|..-|.+.+.+.+.+..+++ ..|.-+. +.-+.+
T Consensus 24 Kaa~kFR~fLlk~Gy~MlQ----------fSvYsri~kg~~s~~~~i~rl~e-------------~lP~~Gn--ir~L~v 78 (116)
T COG3512 24 KAANKFRQFLLKDGYQMLQ----------FSVYSRILKGRDSNQKHIGRLRE-------------HLPNEGN--IRCLEV 78 (116)
T ss_pred HHHHHHHHHHHHhhHHHHH----------HHHHHHHHhCchhHHHHHHHHHH-------------hCCCCCc--eEEEEe
Confidence 4455666666667777775 37999999999999888887743 3443222 222333
Q ss_pred chhhhhhhhhHHhHHHHHhhccCC----cchhhhhhhhhC
Q psy11458 124 TGMLREQTSYSSLHVQKILTFIFP----WRLGTIEWFVES 159 (159)
Q Consensus 124 ~PmQRI~TKYPLLL~~Ilk~~~~~----~~~~~~~~~~~~ 159 (159)
.--|=- +-.|||..+.-|-.-- --|.-+|+|-||
T Consensus 79 TEKQfa--~M~lLlG~~~~nek~~Ns~~lllF~~ea~~e~ 116 (116)
T COG3512 79 TEKQFA--RMKLLLGELVFNEKKVNSDQLLLFLGEAFDES 116 (116)
T ss_pred hHHHHh--HHHHHhhhhhhhhhhcCccceEEeeeccccCC
Confidence 343422 4466777663332221 235566666554
No 34
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=23.18 E-value=2.8e+02 Score=19.63 Aligned_cols=54 Identities=19% Similarity=0.062 Sum_probs=35.4
Q ss_pred HHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHH--hcCHhHHHHHHHHHhC
Q psy11458 56 EYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERR--RKDSRLNAFLTEAELN 110 (159)
Q Consensus 56 IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~--kkn~~F~~fl~~ce~~ 110 (159)
|-+-+.+++....-|.. .+-..-.+|...|..+++.+. ++.--|..|+..++..
T Consensus 24 il~~l~~~L~~~~~e~I-~a~~~~~g~~~aa~~Ll~~L~~~r~~~wf~~Fl~AL~~~ 79 (88)
T cd08812 24 ILDHLPECLTDEDKEQI-LAEERNKGNIAAAEELLDRLERCDKPGWFQAFLDALRRT 79 (88)
T ss_pred HHHHHHHHcCHHHHHHH-HHHHhccChHHHHHHHHHHHHHhccCCcHHHHHHHHHHc
Confidence 34444545554333332 222333478999999999887 5888999999988764
No 35
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=20.91 E-value=1.5e+02 Score=22.42 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=15.2
Q ss_pred CCC-cccCcccccccCCcceeeec
Q psy11458 3 PPP-VVNGGRRSYSESDYTYIDIV 25 (159)
Q Consensus 3 ~~~-~~~~~~~~~~~~~~~~~~~~ 25 (159)
||| .-.||.|.|+++|-..++++
T Consensus 27 ~p~~r~~~gyR~Y~~~~v~~l~~I 50 (131)
T cd04786 27 SSVERSANGYRDYPPETVWVLEII 50 (131)
T ss_pred CCCCcCCCCCeecCHHHHHHHHHH
Confidence 444 34578999998876655443
No 36
>PF13411 MerR_1: MerR HTH family regulatory protein; PDB: 2JML_A 3GP4_A 3GPV_B.
Probab=20.66 E-value=26 Score=22.71 Aligned_cols=19 Identities=47% Similarity=0.742 Sum_probs=12.6
Q ss_pred CCCcccCcccccccCCcce
Q psy11458 3 PPPVVNGGRRSYSESDYTY 21 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (159)
||+...||+|-|++.|-..
T Consensus 27 ~~~~~~~g~r~y~~~dv~~ 45 (69)
T PF13411_consen 27 PPPRDENGYRYYSEEDVER 45 (69)
T ss_dssp TTBESTTSSEEE-HHHHHH
T ss_pred ccccccCceeeccHHHHHH
Confidence 5556678889998876443
No 37
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.64 E-value=31 Score=20.66 Aligned_cols=17 Identities=41% Similarity=0.778 Sum_probs=11.0
Q ss_pred CCCcccCcccccccCCc
Q psy11458 3 PPPVVNGGRRSYSESDY 19 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (159)
||.-..||+|.|+++|-
T Consensus 27 ~~~~~~~~~~~y~~~~v 43 (49)
T cd04761 27 SPARTEGGYRLYSDADL 43 (49)
T ss_pred CCCcCCCCCEEeCHHHH
Confidence 43334568888988763
No 38
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=20.55 E-value=1.4e+02 Score=23.52 Aligned_cols=28 Identities=7% Similarity=0.082 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHhC
Q psy11458 83 QQIALESLRERRRKDSRLNAFLTEAELN 110 (159)
Q Consensus 83 q~~A~~~lkel~kkn~~F~~fl~~ce~~ 110 (159)
...-.+++.+++++++.|+.|++...+.
T Consensus 116 ~~~l~aL~~~K~~~s~~F~~f~~~l~S~ 143 (179)
T PF06757_consen 116 RDKLRALYEEKLATSPEFAEFVEALRSP 143 (179)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHcCH
Confidence 3444667777888888888888777653
No 39
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3.1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....
Probab=20.46 E-value=3.1e+02 Score=19.18 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=41.3
Q ss_pred HHhHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHhCCCCCCCCCCCcccc
Q psy11458 52 YQNQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPT 124 (159)
Q Consensus 52 ~v~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~~p~CrrL~L~d~L~~ 124 (159)
.++-+||.++++... ...|..|-......+..++...-.|..+..... +++|..++..
T Consensus 2 rLefLGDavL~~~v~------~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~---------~~gl~~~l~~ 59 (114)
T PF00636_consen 2 RLEFLGDAVLKLLVS------EYLFEKYPNLNEGQLTKLRSALVSNKFLARLAV---------KLGLHKYLRQ 59 (114)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHH---------HTTHGCTCBH
T ss_pred cHhHhHHHHHHHHHH------HHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHH---------HhCchHhhhc
Confidence 456799999998742 456777777777788888887777777776644 3666666664
Done!