Query psy11458
Match_columns 159
No_of_seqs 120 out of 358
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 18:56:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11458hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xcg_A PDZ-rhogef, RHO guanine 99.9 1.2E-23 4.3E-28 177.8 8.7 106 40-146 70-185 (368)
2 1txd_A RHO guanine nucleotide 99.9 2.8E-23 9.5E-28 177.2 8.8 105 40-146 73-190 (385)
3 3p6a_A RHO guanine nucleotide 99.9 4.2E-23 1.4E-27 174.7 8.4 105 40-145 76-191 (377)
4 3t06_A PDZ-rhogef, RHO guanine 99.9 1.7E-22 6E-27 173.7 8.6 106 40-146 112-227 (418)
5 3jv3_A Intersectin-1; SH3 doma 99.9 5.1E-22 1.7E-26 161.9 7.2 99 40-145 131-242 (283)
6 3odw_A RHO guanine nucleotide 99.8 1.2E-21 4E-26 176.2 8.1 105 40-145 229-344 (536)
7 2z0q_A XPLN, RHO guanine nucle 99.8 1.5E-21 5.1E-26 164.1 7.5 99 40-146 68-176 (346)
8 2vrw_B P95VAV, VAV1, proto-onc 99.8 7.4E-21 2.5E-25 163.5 6.5 98 40-144 72-178 (406)
9 1by1_A Protein (PIX); RHO-GTPa 99.8 8.4E-21 2.9E-25 150.5 6.1 105 27-146 54-168 (209)
10 3mpx_A FYVE, rhogef and PH dom 99.8 2.5E-20 8.7E-25 160.6 6.7 99 40-145 80-188 (434)
11 2dfk_A Collybistin II; DH doma 99.8 1E-19 3.4E-24 157.2 7.1 99 40-146 91-200 (402)
12 1foe_A T-lymphoma invasion and 99.8 7.5E-20 2.6E-24 155.6 5.1 97 40-145 60-179 (377)
13 2pz1_A RHO guanine nucleotide 99.8 1.9E-19 6.6E-24 157.2 6.7 99 40-146 168-277 (466)
14 3jzy_A Intersectin 2; C2 domai 99.8 1.7E-20 5.8E-25 163.5 0.0 100 40-146 76-188 (510)
15 3ky9_A Proto-oncogene VAV; cal 99.8 1.8E-19 6.2E-24 162.5 4.1 99 40-145 244-351 (587)
16 1dbh_A Protein (human SOS 1); 99.7 1.5E-19 5.1E-24 152.3 1.9 100 40-145 53-168 (354)
17 1kz7_A Guanine nucleotide exch 99.7 4.2E-18 1.4E-22 144.6 4.8 100 29-145 59-166 (353)
18 1nty_A Triple functional domai 99.7 1.2E-17 4E-22 139.0 4.8 99 29-145 55-161 (311)
19 2rgn_B RHOA/RAC/CDC42 exchange 99.7 1.7E-17 5.9E-22 140.9 4.3 99 29-145 56-162 (354)
20 3ksy_A SOS-1, SON of sevenless 99.6 2.5E-17 8.7E-22 158.2 -1.2 105 31-145 245-365 (1049)
21 2k4f_A T-cell surface glycopro 37.7 11 0.00039 24.5 1.0 24 3-35 30-53 (57)
22 2f4m_B UV excision repair prot 26.3 65 0.0022 20.9 3.3 42 94-143 7-48 (61)
23 1irz_A ARR10-B; helix-turn-hel 23.3 42 0.0014 22.1 1.9 19 36-57 8-26 (64)
24 2xk0_A Polycomb protein PCL; t 21.5 55 0.0019 22.1 2.2 23 1-23 3-25 (69)
No 1
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=99.89 E-value=1.2e-23 Score=177.78 Aligned_cols=106 Identities=42% Similarity=0.622 Sum_probs=98.6
Q ss_pred hhhHHHHHHHHHHHh----------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHh
Q psy11458 40 PGYWKICNEYCEYQN----------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAEL 109 (159)
Q Consensus 40 ~~Li~ih~~~~~~v~----------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~ 109 (159)
++++++|..|...++ .|||+|+++|++.+++.++++|..||+|+..|.++++++.++|+.|++|+++|++
T Consensus 70 ~~i~~~h~~fl~~L~~~~~~~~~~~~ig~~f~~~~~~~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~fl~~~~~ 149 (368)
T 1xcg_A 70 PELIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAES 149 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHSHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHccchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 789999999987653 5899999999877777889999999999999999999998899999999999999
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458 110 NPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF 146 (159)
Q Consensus 110 ~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~ 146 (159)
+|.|++++|.++|++|+||| +||||||++|+|+|.-
T Consensus 150 ~~~~~~l~L~~~Li~PvQRi-~rY~LLL~~llk~t~~ 185 (368)
T 1xcg_A 150 HPQCRRLQLRDLIISEMQRL-TKYPLLLESIIKHTEG 185 (368)
T ss_dssp SGGGTTCCHHHHTTHHHHHH-HHHHHHHHHHHHTSCT
T ss_pred ChhhccCChHHHhhhHhhhh-hhHHHHHHHHHHhCCC
Confidence 99999999999999999999 9999999999998854
No 2
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=99.88 E-value=2.8e-23 Score=177.20 Aligned_cols=105 Identities=42% Similarity=0.584 Sum_probs=94.9
Q ss_pred hhhHHHHHHHHHHH-------------hHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHH
Q psy11458 40 PGYWKICNEYCEYQ-------------NQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTE 106 (159)
Q Consensus 40 ~~Li~ih~~~~~~v-------------~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ 106 (159)
++++++| .+...+ ..|||+|++++++..++.|.++|..||+|+..|.+.+++++++|+.|++|+++
T Consensus 73 ~~I~~~h-~fL~~l~~~~~~~~~~~~~~~ig~~fl~~~~~~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~ 151 (385)
T 1txd_A 73 EDILQLH-IGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQD 151 (385)
T ss_dssp HHHHHHH-HHHHHHHHHHHTTCTTCCCCCCHHHHHHHHSTHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHhhcCCCcccHHHHHHHHccchhHHHHHHHHHHHHHchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6789999 664433 24899999999876667888999999999999999999998999999999999
Q ss_pred HHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458 107 AELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF 146 (159)
Q Consensus 107 ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~ 146 (159)
|+++|.|++++|.++|++|+||| +||||||++|+|+|.-
T Consensus 152 ~~~~~~~~~l~L~~~Li~PvQRi-~rY~LLL~~llk~t~~ 190 (385)
T 1txd_A 152 AESNPLCRRLQLKDIIPTQMQRL-TKYPLLLDNIAKYTEW 190 (385)
T ss_dssp HHHSGGGTTCCHHHHTTHHHHHH-HHHHHHHHHHHHTCCS
T ss_pred HHhCccccCCChHHHhhhHHhHh-hhHHHHHHHHHhhCCC
Confidence 99999999999999999999999 9999999999998743
No 3
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=99.88 E-value=4.2e-23 Score=174.72 Aligned_cols=105 Identities=40% Similarity=0.575 Sum_probs=97.5
Q ss_pred hhhHHHHHHHHHHHh-----------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHH
Q psy11458 40 PGYWKICNEYCEYQN-----------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAE 108 (159)
Q Consensus 40 ~~Li~ih~~~~~~v~-----------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce 108 (159)
++++++|..|...++ .|||+|++++++..|+.|.++|..||+|+..|.+++++.+++|+.|+.|+++|+
T Consensus 76 ~~I~~~h~~fl~~L~~~~~~~~~~~~~ig~~fl~~~~~~~~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~ 155 (377)
T 3p6a_A 76 DELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAE 155 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 679999999876542 589999999988777788899999999999999999999999999999999999
Q ss_pred hCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458 109 LNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI 145 (159)
Q Consensus 109 ~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~ 145 (159)
++|.|++++|.++|++|+||| +||||||++|++++.
T Consensus 156 ~~~~~~~l~L~~~Li~PvQRi-~rY~LLL~~llk~t~ 191 (377)
T 3p6a_A 156 SRPRCRRLQLKDMIPTEMQRL-TKYPLLLQSIGQNTE 191 (377)
T ss_dssp TSGGGTTCCHHHHTTHHHHHH-HHHHHHHHHHHHTCC
T ss_pred hCcccCCCCHHHHHHHHHHHh-hhHHHHHHHHHhhCC
Confidence 999999999999999999999 999999999999874
No 4
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=99.87 E-value=1.7e-22 Score=173.66 Aligned_cols=106 Identities=42% Similarity=0.622 Sum_probs=98.5
Q ss_pred hhhHHHHHHHHHHHh----------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHh
Q psy11458 40 PGYWKICNEYCEYQN----------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAEL 109 (159)
Q Consensus 40 ~~Li~ih~~~~~~v~----------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~ 109 (159)
++++++|..|...++ .|||+|+++|++..++.++++|..||+|+..|.++++++.++|+.|+.|+++|++
T Consensus 112 ~~I~~~h~~fl~~L~~~~~~~~~~~~ig~ifl~~~~~~~~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~ 191 (418)
T 3t06_A 112 PELIEIHNSWCEAMKKLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAES 191 (418)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCSSCCCCHHHHHHHHSTHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHhcchhhhHHHhhhhHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 689999999987663 5899999999887778889999999999999999999998999999999999999
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458 110 NPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF 146 (159)
Q Consensus 110 ~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~ 146 (159)
+|.|++++|.++|++|+||| +||||||++|++++.-
T Consensus 192 ~~~~~~l~L~s~Li~PvQRi-~rY~LLL~~llk~t~~ 227 (418)
T 3t06_A 192 HPQCRRLQLRDLIISEMQRL-TKYPLLLESIIKHTEG 227 (418)
T ss_dssp SGGGTTCCHHHHTTHHHHHH-HHHHHHHHHHHHTSCT
T ss_pred CcccccCCHHHHHhhHHHHH-HHHHHHHHHHHHhCCC
Confidence 99999999999999999999 9999999999998753
No 5
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A
Probab=99.85 E-value=5.1e-22 Score=161.87 Aligned_cols=99 Identities=13% Similarity=0.164 Sum_probs=90.8
Q ss_pred hhhHHHHHHHHHHHh-------------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHH
Q psy11458 40 PGYWKICNEYCEYQN-------------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTE 106 (159)
Q Consensus 40 ~~Li~ih~~~~~~v~-------------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ 106 (159)
++++++|..|...++ .||++|+.+++ . +++|..||+|+..|.+.+++..++++.|+.|+++
T Consensus 131 ~~i~~~~~~fl~~L~~~~~~~~~~~~~~~ig~~f~~~~~-----~-~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~~l~~ 204 (283)
T 3jv3_A 131 KELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLP-----H-MQPYIRFCSCQLNGAALIQQKTDEAPDFKEFVKR 204 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCCCCCCHHHHHHHGG-----G-GTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCchhHHHHHHHHHHh-----h-chhHHHHHcCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 679999999977653 38999999874 3 4789999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458 107 AELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI 145 (159)
Q Consensus 107 ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~ 145 (159)
|+.+|.|++++|.++|++|+||| +||||||++|+|+|.
T Consensus 205 ~~~~~~~~~l~L~s~Li~PvQRi-~rY~LLL~~llk~t~ 242 (283)
T 3jv3_A 205 LAMDPRCKGMPLSSFILKPMQRV-TRYPLIIKNILENTP 242 (283)
T ss_dssp HTTSGGGTTCCHHHHTTHHHHHH-HHHHHHHHHHHTTSC
T ss_pred HHhCccccCCCHHHHhhhhHHHh-cchHHHHHHHHhcCC
Confidence 99999999999999999999999 999999999999873
No 6
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=99.85 E-value=1.2e-21 Score=176.16 Aligned_cols=105 Identities=40% Similarity=0.585 Sum_probs=97.1
Q ss_pred hhhHHHHHHHHHHH-----------hHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHH
Q psy11458 40 PGYWKICNEYCEYQ-----------NQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAE 108 (159)
Q Consensus 40 ~~Li~ih~~~~~~v-----------~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce 108 (159)
++++++|..|...+ ..|||+|++++++..++.|.++|..||+|+..|.+++++++++|+.|+.|+++|+
T Consensus 229 e~I~~~h~~fL~~L~~~~~~~~~~~~~Igdifl~~~~~~~~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~ 308 (536)
T 3odw_A 229 DELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAE 308 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC---CCCCHHHHHHHHSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHcchhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 67999999987654 2589999999987777778899999999999999999999999999999999999
Q ss_pred hCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458 109 LNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI 145 (159)
Q Consensus 109 ~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~ 145 (159)
++|.|++++|.+||++|+||| +||||||++|+|++.
T Consensus 309 ~~~~~~~l~L~s~Li~PvQRi-~rY~LLL~~LlK~T~ 344 (536)
T 3odw_A 309 SRPRCRRLQLKDMIPTEMQRL-TKYPLLLQSIGQNTE 344 (536)
T ss_dssp TSGGGTTCCHHHHTTHHHHHH-HHHHHHHHHHHTTCC
T ss_pred hCcccccCCHHHHHHHHHHHH-HHHHHHHHHHHhcCC
Confidence 999999999999999999999 999999999999874
No 7
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=99.84 E-value=1.5e-21 Score=164.11 Aligned_cols=99 Identities=17% Similarity=0.242 Sum_probs=77.8
Q ss_pred hhhHHHHHHHHHHHh----------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHh
Q psy11458 40 PGYWKICNEYCEYQN----------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAEL 109 (159)
Q Consensus 40 ~~Li~ih~~~~~~v~----------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~ 109 (159)
++++++|..|...++ .|||+|+++++ .| ++|..||+|+..|.++++++ ++|++|++|+++|++
T Consensus 68 ~~i~~~h~~fl~~L~~~~~~~~~~~~ig~~f~~~~~-----~~-~~Y~~Y~~n~~~a~~~l~~~-~~~~~f~~fl~~~~~ 140 (346)
T 2z0q_A 68 DSLIPLHEELLSQLRDVRKPDGSTEHVGPILVGWLP-----CL-SSYDSYCSNQVAAKALLDHK-KQDHRVQDFLQRCLE 140 (346)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTSCCSCCHHHHHHHGG-----GG-GHHHHHHHHHHHHHHHHHHH-TTCHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHhh-----HH-HHHHHHHHCHHHHHHHHHHh-hcCHHHHHHHHHHHh
Confidence 789999999987664 48999999984 34 79999999999999999985 899999999999999
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458 110 NPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF 146 (159)
Q Consensus 110 ~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~ 146 (159)
+|.|++++|.++|++|+||| +||||||++|+|+|.-
T Consensus 141 ~~~~~~l~L~~~L~~PvQRi-~rY~LLL~~llk~t~~ 176 (346)
T 2z0q_A 141 SPFSRKLDLWNFLDIPRSRL-VKYPLLLREILRHTPN 176 (346)
T ss_dssp -------CTTTGGGHHHHHH-HHHHHHHHHHHHTSCT
T ss_pred CccCCCCCHHHHHHHHHHHH-hhHHHHHHHHHhcCCC
Confidence 99999999999999999999 9999999999998854
No 8
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=99.82 E-value=7.4e-21 Score=163.52 Aligned_cols=98 Identities=17% Similarity=0.259 Sum_probs=90.8
Q ss_pred hhhHHHHHHHHHHHh---------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHhC
Q psy11458 40 PGYWKICNEYCEYQN---------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELN 110 (159)
Q Consensus 40 ~~Li~ih~~~~~~v~---------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~~ 110 (159)
++++++|..|...++ .|||+|+++.+ .| ++|..||+|+..|.++++++.++|+.|++|+++|+.+
T Consensus 72 ~~i~~~h~~fl~~L~~~~~~~~~~~ig~~f~~~~~-----~~-~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~ 145 (406)
T 2vrw_B 72 EELFSVHTHFLKELKDALAGPGATTLYQVFIKYKE-----RF-LVYGRYCSQVESASKHLDQVATAREDVQMKLEECSQR 145 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHSGGGTTHHHHHHHHTT-----GG-GHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH-----HH-HHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHhhc
Confidence 789999999977653 49999999874 44 7999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhc
Q psy11458 111 PLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTF 144 (159)
Q Consensus 111 p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~ 144 (159)
|.|++++|.++|++|+||| +||||||++|+|+|
T Consensus 146 ~~~~~l~L~~~Li~PvQRi-~rY~LLL~~llk~t 178 (406)
T 2vrw_B 146 ANNGRFTLRDLLMVPMQRV-LKYHLLLQELVKHT 178 (406)
T ss_dssp HHTTSCCHHHHTTHHHHHH-TTHHHHHHHHHHHC
T ss_pred cccCCcchHHHhhhHHHHH-hhHHHHHHHHHHhC
Confidence 9999999999999999999 99999999999988
No 9
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1
Probab=99.82 E-value=8.4e-21 Score=150.46 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=89.9
Q ss_pred cchhhhcccccCChhhHHHHHHHHHHHh----------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhc
Q psy11458 27 QNDIYAGNDCRWSPGYWKICNEYCEYQN----------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRK 96 (159)
Q Consensus 27 ~~di~~~n~~~~~~~Li~ih~~~~~~v~----------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kk 96 (159)
...||+ |. ++++++|..|...++ .|||+|+++++ .|.++|..||+|+..|.+.+++.
T Consensus 54 ~~~iF~-ni----~~i~~~h~~fl~~L~~~~~~~~~~~~ig~~f~~~~~-----~f~~~Y~~Y~~n~~~a~~~l~~~--- 120 (209)
T 1by1_A 54 ISYLMG-NL----EEICSFQQMLVQSLEECTKLPEAQQRVGGCFLNLMP-----QMKTLYLTYCANHPSAVNVLTEH--- 120 (209)
T ss_dssp GGTTHH-HH----HHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHc-CH----HHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHh---
Confidence 445555 53 789999999987663 59999999873 56569999999999999999976
Q ss_pred CHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458 97 DSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF 146 (159)
Q Consensus 97 n~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~ 146 (159)
++.|+.|++.|+ .+.|++++|.++|++|+||| +||||||++|+|+|.-
T Consensus 121 ~~~f~~fl~~~~-~~~~~~l~L~s~Li~PvQRi-~rY~LLL~~Llk~t~~ 168 (209)
T 1by1_A 121 SEELGEFMETKG-ASSPGILVLTTGLSKPFMRL-DKYPTLLKELERHMED 168 (209)
T ss_dssp TTTHHHHTTTTC-CCSSTTTHHHHHTTSTTTGG-GTHHHHHHHHHHSSCC
T ss_pred CHHHHHHHHHhc-CCCCCcCCHHHHhhHHHHHH-hHHHHHHHHHHhhCCC
Confidence 789999999985 46789999999999999999 9999999999998843
No 10
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.5e-20 Score=160.60 Aligned_cols=99 Identities=16% Similarity=0.043 Sum_probs=85.1
Q ss_pred hhhHHHHHHHHHHHh----------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHh
Q psy11458 40 PGYWKICNEYCEYQN----------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAEL 109 (159)
Q Consensus 40 ~~Li~ih~~~~~~v~----------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~ 109 (159)
++++++|..|...++ .|||+|+++++ . +++|..||+|+..|.+++++.+++++.|++|+++|++
T Consensus 80 ~~I~~~h~~fL~~L~~~~~~~~~~~~ig~ifl~~~~-----~-~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~ 153 (434)
T 3mpx_A 80 PAIHDLHQGILEELEERLSNWESQQKVADVFLAREQ-----G-FDHHATHILQFDRYLGLLSENCLHSPRLAAAVREFEQ 153 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCCCCTHHHHTTTT-----T-HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHhhH-----H-HHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHc
Confidence 689999999977653 48999999874 3 4699999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458 110 NPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI 145 (159)
Q Consensus 110 ~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~ 145 (159)
+|.|++++|.++|++|+||| +||||||++|+++|.
T Consensus 154 ~~~~~~l~L~s~Li~PvQRi-~rY~LLL~~llk~t~ 188 (434)
T 3mpx_A 154 SVQGGSQTAKHRLLRVVQRL-FQYQVLLTDYLNNLC 188 (434)
T ss_dssp C------CHHHHHHHHHHHH-HHHHHHHHHHHTTSC
T ss_pred CcccCCCCHHHHHhhhHHhh-hHHHHHHHHHHhcCC
Confidence 99999999999999999999 999999999999874
No 11
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=99.79 E-value=1e-19 Score=157.24 Aligned_cols=99 Identities=14% Similarity=0.142 Sum_probs=89.5
Q ss_pred hhhHHHHHHHHHHHh-----------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHH
Q psy11458 40 PGYWKICNEYCEYQN-----------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAE 108 (159)
Q Consensus 40 ~~Li~ih~~~~~~v~-----------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce 108 (159)
++++++|..|...++ .||++|+++++ .| ++|..||+|+..|.+.++++. ++++|+.|+++|+
T Consensus 91 ~~I~~~h~~fL~~Le~~~~~~~~~~~~ig~ifl~~~~-----~f-~~Y~~Y~~n~~~a~~~l~~~~-~~~~f~~fl~~~~ 163 (402)
T 2dfk_A 91 EDIYRFQMGFVRDLEKQYNNDDPHLSEIGPCFLEHQD-----GF-WIYSEYCNNHLDACMELSKLM-KDSRYQHFFEACR 163 (402)
T ss_dssp HHHHHHHHHHHHHHHHHCCSSCGGGCCCHHHHHHTTT-----GG-GHHHHHHHHHHHHHHHHHHHT-TSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHh-----hh-HHHHHHHHhhHHHHHHHHHHH-cChHHHHHHHHHH
Confidence 689999999976653 48999999874 45 899999999999999999875 5799999999999
Q ss_pred hCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458 109 LNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF 146 (159)
Q Consensus 109 ~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~ 146 (159)
..+.|++++|.++|++|+||| +||||||++|+++|.-
T Consensus 164 ~~~~~~~l~L~s~Li~PvQRi-~rY~LLL~~Llk~t~~ 200 (402)
T 2dfk_A 164 LLQQMIDIAIDGFLLTPVQKI-CKYPLQLAELLKYTAQ 200 (402)
T ss_dssp HHTTCCSCCHHHHHTHHHHHH-HHHHHHHHHHHHTSCT
T ss_pred hhhhcccCCHHHHHhHHHHHH-HHHHHHHHHHHhhCCC
Confidence 999999999999999999999 9999999999998854
No 12
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=99.78 E-value=7.5e-20 Score=155.61 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=86.1
Q ss_pred hhhHHHHHHHHHHH-----------------------hHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhc
Q psy11458 40 PGYWKICNEYCEYQ-----------------------NQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRK 96 (159)
Q Consensus 40 ~~Li~ih~~~~~~v-----------------------~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kk 96 (159)
++++++|..|...+ ..||++|+.+.+ .| ++|..||+|+..|.+++++. ++
T Consensus 60 ~~I~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~~~~~~ig~~f~~~~~-----~f-~~Y~~Y~~n~~~a~~~l~~~-~~ 132 (377)
T 1foe_A 60 TEMVEFQVEFLKTLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYAD-----RF-KLYSAFCASHTKVPKVLVKA-KT 132 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCGGGCCSGGGGHHHHHHHHHHHHHHTT-----GG-GGHHHHHHHTTTHHHHHTTT-TT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhhhhhhhhhhHHHHHHHHHHHHHH-----HH-HHHHHHHHhHHHHHHHHHHH-hc
Confidence 68999999886654 258999999863 44 79999999999999999875 89
Q ss_pred CHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458 97 DSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI 145 (159)
Q Consensus 97 n~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~ 145 (159)
|+.|++|+++|+..+ |++++|.++|++|+||| +||||||++|+++|.
T Consensus 133 ~~~f~~fl~~~~~~~-~~~l~L~s~Li~PvQRi-~rY~LLL~~llk~t~ 179 (377)
T 1foe_A 133 DTAFKAFLDAQNPRQ-QHSSTLESYLIKPIQRV-LKYPLLLRELFALTD 179 (377)
T ss_dssp CHHHHHHHHHHCTTC-CGGGSHHHHTTHHHHHH-TTHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHhhcc-ccCcCHHHHhccchhhh-ccHHHHHHHHHHhCC
Confidence 999999999998866 89999999999999999 999999999999885
No 13
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=99.77 E-value=1.9e-19 Score=157.16 Aligned_cols=99 Identities=12% Similarity=0.099 Sum_probs=89.1
Q ss_pred hhhHHHHHHHHHHHh-----------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHH
Q psy11458 40 PGYWKICNEYCEYQN-----------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAE 108 (159)
Q Consensus 40 ~~Li~ih~~~~~~v~-----------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce 108 (159)
++++++|..|...++ .||++|+++++ .| ++|..||+|+..|.+.++++. ++++|+.|+++|+
T Consensus 168 ~~I~~~h~~fL~~Le~~~~~~~~~~~~ig~~fl~~~~-----~f-~~Y~~Y~~n~~~a~~~l~~~~-~~~~f~~f~~~~~ 240 (466)
T 2pz1_A 168 EDIYRCQKAFVKALEQRFNRERPHLSELGACFLEHQA-----DF-QIYSEYCNNHPNACVELSRLT-KLSKYVYFFEACR 240 (466)
T ss_dssp HHHHHHHHHHHHHHHHHCCSSCGGGCCCHHHHHHTHH-----HH-TTHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHhhH-----HH-HHHHHHHHhhHHHHHHHHHHH-hccHHHHHHHHHH
Confidence 679999999977653 48999999873 55 899999999999999999875 5789999999999
Q ss_pred hCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458 109 LNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF 146 (159)
Q Consensus 109 ~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~ 146 (159)
..+.|++++|.++|++|+||| +||||||++|+|+|.-
T Consensus 241 ~~~~~~~l~L~~~Li~PvQRi-~rY~LLL~~llk~t~~ 277 (466)
T 2pz1_A 241 LLQKMIDISLDGFLLTPVQKI-CKYPLQLAELLKYTHP 277 (466)
T ss_dssp HHHTCCSCCHHHHHHHHHHHH-HHHHHHHHHHHHTSCT
T ss_pred HhhhhccCCHHHHhhhHHHHh-hhHHHHHHHHHhcCCC
Confidence 999999999999999999999 9999999999998854
No 14
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.77 E-value=1.7e-20 Score=163.53 Aligned_cols=100 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHH-------------hHHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHH
Q psy11458 40 PGYWKICNEYCEYQ-------------NQEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTE 106 (159)
Q Consensus 40 ~~Li~ih~~~~~~v-------------~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ 106 (159)
++++++|..|...+ ..|||+|+.+++ . +++|..||+|+..|.+.+++..++|+.|+.|+++
T Consensus 76 ~~i~~~h~~fl~~L~~~~~~~~~~~~~~~ig~~f~~~~~-----~-~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~~~~~ 149 (510)
T 3jzy_A 76 KELIMSNTKLLKALRVRKKTGGEKMPVQMIGDILAAELS-----H-MQAYIRFCSCQLNGAALLQQKTDEDTDFKEFLKK 149 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHhH-----H-HHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 55777777775433 468999999874 3 4799999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhccC
Q psy11458 107 AELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFIF 146 (159)
Q Consensus 107 ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~~ 146 (159)
|+.+|.|++++|.++|++|+||| +||||||++|+|+|..
T Consensus 150 ~~~~~~~~~l~L~~~L~~PvQRi-~rY~LLL~~llk~t~~ 188 (510)
T 3jzy_A 150 LASDPRCKGMPLSSFLLKPMQRI-TRYPLLIRSILENTPE 188 (510)
T ss_dssp ----------------------------------------
T ss_pred HHhCccccCCCHHHHhChhhhhh-cCcHHHHHHHHhcCCC
Confidence 99999999999999999999999 9999999999998743
No 15
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=99.76 E-value=1.8e-19 Score=162.53 Aligned_cols=99 Identities=17% Similarity=0.246 Sum_probs=91.3
Q ss_pred hhhHHHHHHHHHHHh---------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhHHHHHHHHHhC
Q psy11458 40 PGYWKICNEYCEYQN---------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELN 110 (159)
Q Consensus 40 ~~Li~ih~~~~~~v~---------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F~~fl~~ce~~ 110 (159)
++++++|..|...++ .||++|+++.+ .| ++|..||+|+..|.++++++.++++.|++|+++|+++
T Consensus 244 ~~I~~~h~~fL~~L~~~~~~~~~~~ig~if~~~~~-----~f-~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~ 317 (587)
T 3ky9_A 244 EDLLRVHTHFLKEMKEALGTPGAANLYQVFIKYKE-----RF-LVYGRYCSQVESASKHLDRVAAAREDVQMKLEECSQR 317 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSTTCSHHHHHHHTTT-----GG-GHHHHHHHHHHHHHHHHHHHHHTCHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHH-----hc-chHHHHHhChHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 679999999977653 48999999873 44 7999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458 111 PLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI 145 (159)
Q Consensus 111 p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~ 145 (159)
|.|++++|.++|++|+||| +||||||++|+|++.
T Consensus 318 ~~~~~l~L~s~Li~PvQRi-~rY~LLL~~Llk~T~ 351 (587)
T 3ky9_A 318 ANNGRFTLRDLLMVPMQRV-LKYHLLLQELVKHTQ 351 (587)
T ss_dssp HHSSSCCHHHHHHHHHHHH-TTHHHHHHHHHHTCC
T ss_pred cccCCCCHHHHHhHHHHHH-HHHHHHHHHHHhcCC
Confidence 9999999999999999999 999999999999874
No 16
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=99.75 E-value=1.5e-19 Score=152.33 Aligned_cols=100 Identities=6% Similarity=-0.099 Sum_probs=86.2
Q ss_pred hhhHHHHHHHHHHHh-------------HHHHHHHhhchhhhhHHHHHhHhhhhccH--HHHHHHHHHHHhcCHhHHHHH
Q psy11458 40 PGYWKICNEYCEYQN-------------QEYQMNMEYFDGAAGEAFQRAAATFCSRQ--QIALESLRERRRKDSRLNAFL 104 (159)
Q Consensus 40 ~~Li~ih~~~~~~v~-------------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq--~~A~~~lkel~kkn~~F~~fl 104 (159)
++++++|..|...++ .|||+|+++.+. .++++|..||+|+ ..|.+.++++ +++++|+.|+
T Consensus 53 ~~I~~~h~~fl~~L~~~~~~~~~~~~~~~ig~~f~~~~~~----~~f~~Y~~Y~~n~~~~~a~~~l~~~-~~~~~f~~~l 127 (354)
T 1dbh_A 53 VDIHELSVKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEE----LAFDPYESYARDILRPGFHDRFLSQ-LSKPGAALYL 127 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTSSSCCCHHHHHHHHHT----TTTHHHHHHHHHHTSTTHHHHHHHH-HHSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHhHH----hhhhHHHHHHHhccchHHHHHHHHH-hcChHHHHHH
Confidence 789999999977654 299999997631 1358999999999 5667999987 6899999999
Q ss_pred HH-HHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458 105 TE-AELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI 145 (159)
Q Consensus 105 ~~-ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~ 145 (159)
+. |+..+.|++++|.++|++|+||| +||||||+.|+|+|.
T Consensus 128 ~~~~~~~~~~~~~~L~~~Li~PvQRi-~rY~LLL~~llk~t~ 168 (354)
T 1dbh_A 128 QSIGEGFKEAVQYVLPRLLLAPVYHC-LHYFELLKQLEEKSE 168 (354)
T ss_dssp HHHCTTHHHHHHHTHHHHTTHHHHHH-HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh-chHHHHHHHHHhcCC
Confidence 88 55678899999999999999999 999999999999883
No 17
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=99.71 E-value=4.2e-18 Score=144.60 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=83.2
Q ss_pred hhhhcccccCChhhHHHHH-HHHHHHh-------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhH
Q psy11458 29 DIYAGNDCRWSPGYWKICN-EYCEYQN-------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRL 100 (159)
Q Consensus 29 di~~~n~~~~~~~Li~ih~-~~~~~v~-------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F 100 (159)
+.+++|. ++++++|+ .|...++ .|||+|+++++ .| ++|..||+|+..|.+++++. +++
T Consensus 59 ~~iF~ni----~~I~~~h~~~fl~~Le~~~~~~~~ig~~fl~~~~-----~f-~~Y~~Y~~n~~~a~~~l~~~-~~~--- 124 (353)
T 1kz7_A 59 NILFGNM----EEIYHFHNRIFLRELESCIDCPELVGRCFLERME-----EF-QIYEKYCQNKPRSESLWRQC-SDC--- 124 (353)
T ss_dssp HHHHTTH----HHHHHHHHHTHHHHHHTTTTCGGGHHHHHHTTTT-----GG-GHHHHHHHHHHHHHHHHHHH-TTC---
T ss_pred HHHHhCH----HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhH-----HH-HHHHHHHhChHHHHHHHHHh-hcc---
Confidence 3445563 78999996 7877664 69999999874 45 89999999999999999876 444
Q ss_pred HHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458 101 NAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI 145 (159)
Q Consensus 101 ~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~ 145 (159)
.|+++|+.. .|++++|.++|++|+||| +||||||++|+|++.
T Consensus 125 -~f~~~~~~~-~~~~l~L~~~Li~PvQRi-~rY~LLL~~llk~t~ 166 (353)
T 1kz7_A 125 -PFFQECQKK-LDHKLSLDSYLLKPVQRI-TKYQLLLKEMLKYSK 166 (353)
T ss_dssp -HHHHHHHHH-HTCSSCHHHHHTHHHHHH-HHHHHHHHHHHHTCT
T ss_pred -hHHHHHHHh-cCCCCCHHHHHHHHHHHH-HHHHHHHHHHHhccC
Confidence 566777765 489999999999999999 999999999999875
No 18
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=99.69 E-value=1.2e-17 Score=139.00 Aligned_cols=99 Identities=14% Similarity=0.170 Sum_probs=81.1
Q ss_pred hhhhcccccCChhhHHHHHH-HHHHHh-------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhH
Q psy11458 29 DIYAGNDCRWSPGYWKICNE-YCEYQN-------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRL 100 (159)
Q Consensus 29 di~~~n~~~~~~~Li~ih~~-~~~~v~-------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F 100 (159)
+.+++|. ++++++|.+ |...++ .|||+|+++++ .| ++|..||+|+..|.+++++..
T Consensus 55 ~~iF~ni----~~i~~~h~~~fl~~L~~~~~~~~~ig~~f~~~~~-----~~-~~Y~~Y~~n~~~a~~~l~~~~------ 118 (311)
T 1nty_A 55 LIIFGNM----QEIYEFHNNIFLKELEKYEQLPEDVGHCFVTWAD-----KF-QMYVTYCKNKPDSTQLILEHA------ 118 (311)
T ss_dssp HHHHTTH----HHHHHHHHHTHHHHHHHTTTCGGGTHHHHHHTTT-----TT-HHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHhhcCH----HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-----Hh-HHHHHHHhCcHHHHHHHHHHH------
Confidence 4445563 789999996 877653 69999999874 44 899999999999999997642
Q ss_pred HHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458 101 NAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI 145 (159)
Q Consensus 101 ~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~ 145 (159)
..|++.|++.+. .+++|.++|++|+||| +||||||++|+|+|.
T Consensus 119 ~~f~~~~~~~~~-~~l~L~~~Li~PvQRi-~rY~LLL~~llk~t~ 161 (311)
T 1nty_A 119 GSYFDEIQQRHG-LANSISSYLIKPVQRI-TKYQLLLKELLTCCE 161 (311)
T ss_dssp TTHHHHHHHHHT-CSSCHHHHHTHHHHHH-HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhcc-CCCCHHHHhhhhHHHH-HHHHHHHHHHHHhCC
Confidence 356667777664 4799999999999999 999999999999884
No 19
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=99.67 E-value=1.7e-17 Score=140.90 Aligned_cols=99 Identities=17% Similarity=0.198 Sum_probs=80.7
Q ss_pred hhhhcccccCChhhHHHHHH-HHHHHh-------HHHHHHHhhchhhhhHHHHHhHhhhhccHHHHHHHHHHHHhcCHhH
Q psy11458 29 DIYAGNDCRWSPGYWKICNE-YCEYQN-------QEYQMNMEYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRL 100 (159)
Q Consensus 29 di~~~n~~~~~~~Li~ih~~-~~~~v~-------~IGDIll~~F~g~~ge~~~~~Y~~yCsnq~~A~~~lkel~kkn~~F 100 (159)
+.+++|. ++++++|.. |...++ .|||+|+++.+ .| ++|..||+|+..|.+++++.. ++.|
T Consensus 56 ~~iF~ni----~~I~~~h~~~fl~~L~~~~~~~~~ig~~fl~~~~-----~f-~~Y~~Y~~n~~~a~~~l~~~~--~~~f 123 (354)
T 2rgn_B 56 RIVFGNI----QQIYEWHRDYFLQELQRCLKDPDWLAQLFIKHER-----RL-HMYVVYCQNKPKSEHVVSEFG--DSYF 123 (354)
T ss_dssp HHHHTTH----HHHHHHHHHTHHHHHHHHHSCGGGHHHHHHHTTT-----TT-HHHHHHHHTSHHHHHHHTTTS--HHHH
T ss_pred HHHhhCH----HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhHH-----HH-HHHHHHHhCcHHHHHHHHHHH--HHHH
Confidence 4445563 789999998 776653 59999999874 45 899999999999999998763 3445
Q ss_pred HHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458 101 NAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI 145 (159)
Q Consensus 101 ~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~ 145 (159)
+++ .+ +.|++++|.++|++|+||| +||||||++|+|+|.
T Consensus 124 ~~~----~~-~~~~~l~L~s~Li~PvQRi-~rY~LLL~~llk~t~ 162 (354)
T 2rgn_B 124 EEL----RQ-QLGHRLQLNDLLIKPVQRI-MKYQLLLKDFLKYYN 162 (354)
T ss_dssp HHH----HH-HHCCSSCHHHHTTHHHHHH-TSHHHHHHHHHHHTS
T ss_pred HHH----HH-hcCCCCCHHHHhhhHHHHH-hHHHHHHHHHHHhCC
Confidence 444 43 4689999999999999999 999999999999885
No 20
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.61 E-value=2.5e-17 Score=158.24 Aligned_cols=105 Identities=6% Similarity=-0.119 Sum_probs=89.2
Q ss_pred hhcccccCChhhHHHHHHHHHHH-------------hHHHHHHHhhchhhhhHHHHHhHhhhhccH--HHHHHHHHHHHh
Q psy11458 31 YAGNDCRWSPGYWKICNEYCEYQ-------------NQEYQMNMEYFDGAAGEAFQRAAATFCSRQ--QIALESLRERRR 95 (159)
Q Consensus 31 ~~~n~~~~~~~Li~ih~~~~~~v-------------~~IGDIll~~F~g~~ge~~~~~Y~~yCsnq--~~A~~~lkel~k 95 (159)
+++|. ++++++|..|...+ ..|||+|+++.+. ..+.+|..||+|+ ..|.+.++++.
T Consensus 245 IF~Ni----~~I~~~h~~fL~~Le~~~~~~~~~~~~~~IgdiFl~~~~~----~~F~~Y~~Yc~ny~~~~a~~~l~~l~- 315 (1049)
T 3ksy_A 245 IFSRI----VDIHELSVKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEE----LAFDPYESYARDILRPGFHDRFLSQL- 315 (1049)
T ss_dssp HHSSH----HHHHHHHHHHHHHHHHHHHHCCSSSSSCCCHHHHHHHHHT----TTTSHHHHHHHHHHCTTHHHHHHTTS-
T ss_pred HhcCH----HHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHHH----hhhhHHHHHHHhhccHHHHHHHHHHh-
Confidence 44563 78999999997654 2589999998532 1247999999995 99999999886
Q ss_pred cCHhHHHHHHH-HHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhhcc
Q psy11458 96 KDSRLNAFLTE-AELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILTFI 145 (159)
Q Consensus 96 kn~~F~~fl~~-ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~~~ 145 (159)
+++.|..|+++ |+..|.|++|+|.+||++|+||| +||||||++|+|++.
T Consensus 316 ~~~~f~~fl~~~~~~~~~~~~l~L~s~LikPvQRI-~rY~LLL~~LlK~Tp 365 (1049)
T 3ksy_A 316 SKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHC-LHYFELLKQLEEKSE 365 (1049)
T ss_dssp SSTTHHHHHHHHCTTHHHHHHHTHHHHTTHHHHHH-HHHHHHHHHHHHSCC
T ss_pred cChHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHH-hHHHHHHHHHHhcCC
Confidence 89999999998 77789999999999999999999 999999999999663
No 21
>2k4f_A T-cell surface glycoprotein CD3 epsilon chain; ITAM, TCR, membrane bound protein, bicelle, immunoglobulin domain, membrane, phosphoprotein; NMR {Mus musculus}
Probab=37.73 E-value=11 Score=24.48 Aligned_cols=24 Identities=50% Similarity=0.909 Sum_probs=17.5
Q ss_pred CCCcccCcccccccCCcceeeecccchhhhccc
Q psy11458 3 PPPVVNGGRRSYSESDYTYIDIVSQNDIYAGND 35 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~n~ 35 (159)
||||-| -||+-|+ +-|.|+|++..
T Consensus 30 pPPVPN--------PDYEpIR-kGqrdlY~GLn 53 (57)
T 2k4f_A 30 PPPVPN--------PDYEPIR-KGQRDLYSGLN 53 (57)
T ss_dssp CCCCCS--------GGGCTTC-CCCCHHHHGGG
T ss_pred CCCCCC--------CCcchhh-cccHHHHhhhh
Confidence 666665 4788887 46789998864
No 22
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=26.31 E-value=65 Score=20.94 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=34.4
Q ss_pred HhcCHhHHHHHHHHHhCCCCCCCCCCCcccchhhhhhhhhHHhHHHHHhh
Q psy11458 94 RRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSYSSLHVQKILT 143 (159)
Q Consensus 94 ~kkn~~F~~fl~~ce~~p~CrrL~L~d~L~~PmQRI~TKYPLLL~~Ilk~ 143 (159)
.+.+|.|.+.-+-..+|| +.|.--+|+|...+|=|++.|-.|
T Consensus 7 Lr~~Pqf~~lR~~vq~NP--------~~L~~lLqql~~~nP~l~~~I~~n 48 (61)
T 2f4m_B 7 LRNQPQFQQMRQIIQQNP--------SLLPALLQQIGRENPQLLQQISQH 48 (61)
T ss_dssp GTTCHHHHHHHHHHHHCG--------GGHHHHHHHHHHHCHHHHHHHHHS
T ss_pred HHcChHHHHHHHHHHHCH--------HHHHHHHHHHHhHCHHHHHHHHHC
Confidence 468899999999999998 457778888888888888877655
No 23
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=23.33 E-value=42 Score=22.15 Aligned_cols=19 Identities=11% Similarity=0.258 Sum_probs=15.9
Q ss_pred ccCChhhHHHHHHHHHHHhHHH
Q psy11458 36 CRWSPGYWKICNEYCEYQNQEY 57 (159)
Q Consensus 36 ~~~~~~Li~ih~~~~~~v~~IG 57 (159)
-+|+|+ +|..|-+.++.+|
T Consensus 8 ~~WT~e---lH~~Fv~Av~~LG 26 (64)
T 1irz_A 8 VLWTHE---LHNKFLAAVDHLG 26 (64)
T ss_dssp CSSCHH---HHHHHHHHHHHHC
T ss_pred CcCCHH---HHHHHHHHHHHhC
Confidence 468887 7889999998888
No 24
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=21.48 E-value=55 Score=22.13 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=16.7
Q ss_pred CCCCCcccCcccccccCCcceee
Q psy11458 1 MTPPPVVNGGRRSYSESDYTYID 23 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (159)
|+|||-.-.-+-.|++.+.-++.
T Consensus 3 m~pp~~a~~pa~~~~~geDVL~r 25 (69)
T 2xk0_A 3 MAPPVAAPSPAVTYALQEDVFIK 25 (69)
T ss_dssp SSCSSSSSCCCCCCCTTCEEEEE
T ss_pred CCCCCCCCCcccccccCCeEEEE
Confidence 78888766666788888776654
Done!