RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11458
(159 letters)
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 67.6 bits (165), Expect = 4e-14
Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 62 EYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDI 121
FDG A E Q+ AA FCS Q IALE ++ ++RK+SR F+ EAE +P CRRLQL+D+
Sbjct: 102 ARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDL 161
Query: 122 IPTGMLREQTSYSSLHVQKIL 142
I + M R T Y L ++ I+
Sbjct: 162 IISEMQR-LTKY-PLLLESII 180
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 65.7 bits (160), Expect = 1e-13
Identities = 44/81 (54%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 62 EYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDI 121
FDGA G FQ+ ++ FCSRQ ALE L+ ++RKD R AF+ EAE P CRRLQLKD+
Sbjct: 109 ARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDM 168
Query: 122 IPTGMLREQTSYSSLHVQKIL 142
IPT M R T Y L +Q I
Sbjct: 169 IPTEMQR-LTKY-PLLLQSIG 187
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 65.5 bits (159), Expect = 2e-13
Identities = 44/81 (54%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 62 EYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDI 121
FDGA G FQ+ ++ FCSRQ ALE L+ ++RKD R AF+ EAE P CRRLQLKD+
Sbjct: 262 ARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDM 321
Query: 122 IPTGMLREQTSYSSLHVQKIL 142
IPT M R T Y L +Q I
Sbjct: 322 IPTEMQR-LTKY-PLLLQSIG 340
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 65.3 bits (159), Expect = 3e-13
Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 62 EYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDI 121
FDG A E Q+ AA FCS Q IALE ++ ++RK+SR F+ EAE +P CRRLQL+D+
Sbjct: 144 ARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDL 203
Query: 122 IPTGMLREQTSYSSLHVQKIL 142
I + M R T Y L ++ I+
Sbjct: 204 IISEMQR-LTKY-PLLLESII 222
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 64.5 bits (157), Expect = 4e-13
Identities = 39/67 (58%), Positives = 47/67 (70%)
Query: 62 EYFDGAAGEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDI 121
+F G E + AAATFCS Q ALE ++ R++KDSR F+ +AE NPLCRRLQLKDI
Sbjct: 107 TWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDI 166
Query: 122 IPTGMLR 128
IPT M R
Sbjct: 167 IPTQMQR 173
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 59.3 bits (143), Expect = 3e-11
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 72 FQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
+A FCS Q L+++ +D+ FL + +P C+ + L + M R
Sbjct: 115 HMQAYIRFCSCQLNGAALLQQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQR 171
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 55.5 bits (134), Expect = 5e-10
Identities = 11/57 (19%), Positives = 22/57 (38%)
Query: 72 FQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
+ FCS Q ++++ + F+ ++P C+ + L I M R
Sbjct: 170 HMQPYIRFCSCQLNGAALIQQKTDEAPDFKEFVKRLAMDPRCKGMPLSSFILKPMQR 226
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 53.6 bits (129), Expect = 3e-09
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 72 FQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
+ ++CS Q A L + +++D R+ FL +P R+L L + + R
Sbjct: 104 CLSSYDSYCSNQVAAKALL-DHKKQDHRVQDFLQRCLESPFSRKLDLWNFLDIPRSR 159
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 47.3 bits (112), Expect = 4e-07
Identities = 11/59 (18%), Positives = 20/59 (33%)
Query: 70 EAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
+ +CS+ + A + L + L E R L+D++ M R
Sbjct: 277 KERFLVYGRYCSQVESASKHLDRVAAAREDVQMKLEECSQRANNGRFTLRDLLMVPMQR 335
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 44.1 bits (104), Expect = 5e-06
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 77 ATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLR 128
+CS+ + A + L + + L E R L+D++ M R
Sbjct: 112 GRYCSQVESASKHLDQVATAREDVQMKLEECSQRANNGRFTLRDLLMVPMQR 163
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 38.4 bits (89), Expect = 4e-04
Identities = 10/43 (23%), Positives = 13/43 (30%)
Query: 78 TFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKD 120
T + L L E RL A + E E + K
Sbjct: 122 THILQFDRYLGLLSENCLHSPRLAAAVREFEQSVQGGSQTAKH 164
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 32.9 bits (75), Expect = 0.029
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 78 TFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKD--IIP 123
+C+ A L + KDSR F L + + + P
Sbjct: 134 EYCNNHLDACMEL-SKLMKDSRYQHFFEACRLLQQMIDIAIDGFLLTP 180
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.036
Identities = 22/147 (14%), Positives = 42/147 (28%), Gaps = 56/147 (38%)
Query: 30 IYA-----GNDCRWSPGYWKICNE----YCEYQNQEYQMNMEYFDGAAGEAFQRAAATF- 79
+ A GN + Y++ E Y Y G+ + +A T
Sbjct: 156 LVAIFGGQGN----TDDYFE---ELRDLYQTYH------------VLVGDLIKFSAETLS 196
Query: 80 -CSRQQIALESLRER--------RRKDSRLN-AFLTEAELN-PL------------CRRL 116
R + E + + + + +L ++ PL + L
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 117 QLKDIIPTGMLREQTSYSSLHVQKILT 143
G LR ++ H Q ++T
Sbjct: 257 GF----TPGELRSYLKGATGHSQGLVT 279
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.86
Identities = 37/189 (19%), Positives = 52/189 (27%), Gaps = 69/189 (36%)
Query: 15 SESDYTYIDIVS--QNDIYAGNDCRWSPGYWK----------ICNE-------------Y 49
E Y Y DI+S ++ DC+ K I
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 50 CEYQNQEYQMNME------Y---FDGAAGEAFQRAAATFCSRQQIALESLRERRRKD--- 97
Q + Q +E Y E Q S R+R D
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP------SMMTRMYIEQRDRLYNDNQV 125
Query: 98 ------SRLNAF--LTEA--ELNPLCRRLQLKDIIPTGM-------LREQTSYSSLHVQK 140
SRL + L +A EL P K+++ G+ + S VQ
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRP------AKNVLIDGVLGSGKTWVALDV-CLSYKVQC 178
Query: 141 ILTF-IFPW 148
+ F IF W
Sbjct: 179 KMDFKIF-W 186
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 84
Score = 26.8 bits (59), Expect = 1.4
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 126 MLREQTSYSSLHVQKILTFIFPWR 149
+L E S L V+KI+ FI
Sbjct: 57 ILSEDFKLSKLQVKKIMQFINGSG 80
>5rub_A Rubisco (ribulose-1,5-bisphosphate carboxylase(slash)oxygenase);
lyase(carbon-carbon); 1.70A {Rhodospirillum rubrum}
SCOP: c.1.14.1 d.58.9.1 PDB: 1rus_A 2rus_A 9rub_A*
1rba_A
Length = 490
Score = 27.5 bits (60), Expect = 2.1
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 69 GEAFQRAAATFCSRQQIALESLRER 93
+ RA +F R+
Sbjct: 454 HKELARAFESFPGDADQIYPGWRKA 478
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR
like protein, struc genomics, transcription; 1.60A
{Staphylococcus aureus}
Length = 119
Score = 26.3 bits (58), Expect = 3.0
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 86 ALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSY 133
A+ +L R + T E+ L +RLQ+ M+++ +Y
Sbjct: 36 AILTLENREECYQFFDDLCTVNEIQSLSQRLQVAK-----MIKQGYTY 78
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus
thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Length = 135
Score = 25.9 bits (57), Expect = 4.3
Identities = 8/12 (66%), Positives = 9/12 (75%), Gaps = 1/12 (8%)
Query: 40 PG-YWKICNEYC 50
PG Y ICN+YC
Sbjct: 109 PGEYRIICNQYC 120
>1b44_D ETB-POL, protein (B-POL subunit of heat-labIle enterotoxin); B
subunit, heat-labIle enterotoxin anti-HSV; 3.30A
{Escherichia coli} SCOP: b.40.2.1
Length = 129
Score = 26.0 bits (56), Expect = 4.6
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 14/82 (17%)
Query: 44 KICNEYCEYQNQEYQMNMEYFDGAAGEAFQR--------AAATF----CSRQQIALESLR 91
++C+EY + Q Y +N + A +R + ATF Q I +
Sbjct: 7 ELCSEY--HNTQIYTINDKILSYTESMAGKREMVIITFKSGATFQVEVPGSQHIDSQKKA 64
Query: 92 ERRRKDSRLNAFLTEAELNPLC 113
R KD+ +LTE +++ LC
Sbjct: 65 IERMKDTLRITYLTETKIDKLC 86
>3sw0_X H factor 1, complement factor H; innate immune response, sushi
domains, cofactor in the inact of C3B, C3B, human
plasma, immune system; 1.80A {Homo sapiens}
Length = 188
Score = 26.1 bits (57), Expect = 5.1
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 3 PPPVVNGGRRSYSESDYTYIDIVS 26
PPP+ NG S+ S Y V
Sbjct: 69 PPPIDNGDITSFPLSVYAPASSVE 92
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic,
ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase;
HET: AKG; 1.65A {Deinococcus ficus}
Length = 275
Score = 26.1 bits (58), Expect = 5.7
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 3/47 (6%)
Query: 69 GEAFQRAAATFCSRQQIALESLRERRRKDSRLNAFLTEAELNPLCRR 115
G++ A R L + + FL E + L R
Sbjct: 232 GQSLMLATLGLVQR---MAAELHAAEQSPLMDSYFLGFGEGHDLFHR 275
>3frw_A Putative Trp repressor protein; structural genomics, APC21159,
PSI-2, P structure initiative; 2.05A {Ruminococcus obeum
atcc 29174} PDB: 3g1c_A
Length = 107
Score = 25.1 bits (55), Expect = 6.9
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 86 ALESLRERRRKDSRLNAFLTEAELNPLCRRLQLKDIIPTGMLREQTSY 133
A+ L+ + + T EL L +R ++ ML ++ +Y
Sbjct: 19 AILCLKNKEECYTFFEDVCTINELLSLSQRFEVAK-----MLTDKRTY 61
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain,
lipid cubic phase, monoolein, peroxide, electron
transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus
thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B*
3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 3qjs_B* 3bvd_B*
2qpe_B* 3qjt_B* 3eh5_B* 3eh3_B* 3eh4_B*
Length = 168
Score = 25.6 bits (56), Expect = 7.8
Identities = 8/12 (66%), Positives = 9/12 (75%), Gaps = 1/12 (8%)
Query: 40 PG-YWKICNEYC 50
PG Y ICN+YC
Sbjct: 142 PGEYRIICNQYC 153
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain,
copper-contain periplasmic, oxidoreductase; 1.70A
{Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Length = 638
Score = 25.7 bits (56), Expect = 8.3
Identities = 5/12 (41%), Positives = 8/12 (66%), Gaps = 1/12 (8%)
Query: 40 PG-YWKICNEYC 50
PG +W C+ +C
Sbjct: 611 PGLHWYYCSWFC 622
>1ok3_A CD55, CR, DAF, complement decay-accelerating factor; regulator of
complement pathway, regulator of complement; 2.2A {Homo
sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB:
1ojw_A 1ojy_A 1ok1_A 1ok2_A 1ojv_A 1ok9_A 1m11_R 1nwv_A
2qzh_A 2qzf_A
Length = 254
Score = 25.3 bits (55), Expect = 8.9
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 3 PPPVVNGGRRSYSESDYTYIDIVS 26
PP ++ G Y Y V+
Sbjct: 195 APPQIDNGIIQGERDHYGYRQSVT 218
>3r62_A H factor 1, complement factor H; immunity, repeating sushi
domain, regulator of C activation, C3D, immune system;
1.52A {Homo sapiens} PDB: 2bzm_A 3oxu_D 3rj3_D 2g7i_A
3kxv_A 3kzj_A 2xqw_C
Length = 129
Score = 25.0 bits (54), Expect = 9.6
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 2 TPPPVVNGGRRSYSESDYTYIDIVS 26
PPP+ NG S+ S Y V
Sbjct: 9 PPPPIDNGDITSFPLSVYAPASSVE 33
>3o8e_B Membrane cofactor protein; short consensus repeat, complement
control protein, fiber KN virus-receptor interaction,
cell adhesion-immunity complex; HET: NAG; 2.84A {Homo
sapiens} PDB: 2o39_C* 1ckl_A* 3inb_C* 3l89_M*
Length = 252
Score = 25.3 bits (55), Expect = 9.9
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 3 PPPVVNGGRRSYSESDYTYIDIVS 26
P V NG + S + Y V
Sbjct: 196 FPVVENGKQISGFGKKFYYKATVM 219
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A
{Escherichia coli} SCOP: b.40.2.1
Length = 113
Score = 24.8 bits (53), Expect = 10.0
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 14/82 (17%)
Query: 44 KICNEYCEYQNQEYQMNMEYFDGAAGEAFQR--------AAATF----CSRQQIALESLR 91
++C+EY + Q Y +N + A +R + ATF Q I +
Sbjct: 7 ELCSEY--HNTQIYTINDKILSYTESMAGKREMVIITFKSGATFQVEVPGSQHIDSQKKA 64
Query: 92 ERRRKDSRLNAFLTEAELNPLC 113
R KD+ +LTE +++ LC
Sbjct: 65 IERMKDTLRITYLTETKIDKLC 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.425
Gapped
Lambda K H
0.267 0.0468 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,529,632
Number of extensions: 137697
Number of successful extensions: 336
Number of sequences better than 10.0: 1
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 51
Length of query: 159
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 73
Effective length of database: 4,300,587
Effective search space: 313942851
Effective search space used: 313942851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.8 bits)